Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 66 of 129
Found at i:12542269 original size:130 final size:129
Alignment explanation
Indices: 12541952--12542313 Score: 406
Period size: 130 Copynumber: 2.7 Consensus size: 129
12541942 TTAACATAGA
* *
12541952 CTACATTTTT-ATCTTAAAAACGTAATCTATGTTGAAACTTTAGAATTTTTAAAAATAATTTTTT
1 CTACTTTTTTAATC-TAAAAACAT-ATCTATGTTGAAACTTTAGAATTTTTAAAAATAATTTTTT
* * ** * *
12542016 TCAAAATATATTTTCAACTATAAAATTTTGAAAAATAGATTTTTTTCATAATATATTTTCAACAT
64 TCATAATATA--TTCAACTATAAAATTTTCAAAAATAGATTCATTTCATAACATATTTTCAACAA
12542081 ATC
127 ATC
* * * * * * *
12542084 CTACTTTTTTATTTTAAAAAACTTTATTTATGTTGAAACTTTAGAAATTTGAAAAATAAATTTTT
1 CTACTTTTTTAATCT-AAAAAC-ATATCTATGTTGAAACTTTAGAATTTTTAAAAATAATTTTTT
*
12542149 TCATAATATATTCAACTATAAAGTTTTCAAAAATA-ATTCATTT-ATAACATATTTTCAACAAAT
64 TCATAATATATTCAACTATAAAATTTTCAAAAATAGATTCATTTCATAACATATTTTCAACAAAT
*
12542212 G
129 C
* *
12542213 CTACATTTTTTTAATCTAAAAACATAGTCTATGTTGAAATTTTAGAATTTTTAAAAATGATTTTT
1 CTAC--TTTTTTAATCTAAAAACATA-TCTATGTTGAAACTTTAGAATTTTTAAAAATAATTTTT
* * *
12542278 TTCATAATATATTTTCAATTATAGAATTTTAAAAAA
63 TTCATAATATA--TTCAACTATAAAATTTTCAAAAA
12542314 ATCATAATAT
Statistics
Matches: 193, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
129 24 0.12
130 55 0.28
131 32 0.17
132 29 0.15
133 52 0.27
134 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (129 bp):
CTACTTTTTTAATCTAAAAACATATCTATGTTGAAACTTTAGAATTTTTAAAAATAATTTTTTTC
ATAATATATTCAACTATAAAATTTTCAAAAATAGATTCATTTCATAACATATTTTCAACAAATC
Found at i:12542390 original size:125 final size:126
Alignment explanation
Indices: 12541957--12542393 Score: 316
Period size: 133 Copynumber: 3.4 Consensus size: 126
12541947 ATAGACTACA
* ** * * *
12541957 TTTTT-ATCTTAAAAACGTAATCTATGTTGAAACTTTAGAATTTTTAAAAATAATTTTTTTCAAA
1 TTTTTAATC-TAAAAACATAATCTACATCGAAACTTTAGAA-TTTTAAAAATAAATTTTTTCATA
* * * * * *
12542021 ATATATTTTCAACTATAAAATTTTGAAAAATAGATTTTTTTCATAATATATTTTCAACATATCCT
64 ATATA--TTCAACTATAAAGTTTTCAAAAATA-A---TTCT-ATAACATATTTTCAACAAATGCT
12542086 AC--T
122 ACATT
* * * * * ** * *
12542089 TTTTTATTTTAAAAAACTTTATTTATGTTGAAACTTTAGAAATTTGAAAAATAAATTTTTTCATA
1 TTTTTAATCT-AAAAACATAATCTACATCGAAACTTTAG-AATTTTAAAAATAAATTTTTTCATA
12542154 ATATATTCAACTATAAAGTTTTCAAAAATAATTCATTTATAACATATTTTCAACAAATGCTACAT
64 ATATATTCAACTATAAAGTTTTCAAAAATAATTC---TATAACATATTTTCAACAAATGCTACAT
12542219 T
126 T
* ** * * * *
12542220 TTTTTAATCTAAAAACATAGTCTATGTTGAAATTTTAGAATTTTTAAAAATGATTTTTTTCATAA
1 TTTTTAATCTAAAAACATAATCTACATCGAAACTTTAGAA-TTTTAAAAATAAATTTTTTCATAA
* * * *
12542285 TATATTTTCAATTATAGAA-TTTT-AAAAA-AA-TC-ATAATATATTTTCAACATA-GACTATAT
65 TATA--TTCAACTATA-AAGTTTTCAAAAATAATTCTATAACATATTTTCAACAAATG-CTACAT
12542344 T
126 T
* * *
12542345 TTTTTTATCTTAAAAACGTAATCTACATCGAAACTATAGAATTTTAAAA
1 TTTTTAATC-TAAAAACATAATCTACATCGAAACTTTAGAATTTTAAAA
12542394 GAATTTTTTA
Statistics
Matches: 255, Mismatches: 36, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
124 1 0.00
125 39 0.15
126 24 0.09
127 2 0.01
129 26 0.10
130 52 0.20
131 37 0.15
132 19 0.07
133 53 0.21
134 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (126 bp):
TTTTTAATCTAAAAACATAATCTACATCGAAACTTTAGAATTTTAAAAATAAATTTTTTCATAAT
ATATTCAACTATAAAGTTTTCAAAAATAATTCTATAACATATTTTCAACAAATGCTACATT
Found at i:12556284 original size:64 final size:63
Alignment explanation
Indices: 12556143--12556285 Score: 166
Period size: 63 Copynumber: 2.3 Consensus size: 63
12556133 TTTGAGTGAA
*
12556143 TACTGAAGGCATTTTTGATAGAAAATTGCTTGAATAATCCAGTTAAAAAAATGGATAGGAGAT
1 TACTGAAGGCGTTTTTGATAGAAAATTGCTTGAATAATCCAGTTAAAAAAATGGATAGGAGAT
* * * * *
12556206 TACTGAAGGTGTTTTTGGTAGACAA-TGCCTTGAATAATCCACTGATTAAAAAAAT-G-TATGCG
1 TACTGAAGGCGTTTTTGATAGAAAATTG-CTTGAATAATCCA--G-TTAAAAAAATGGATAGGAG
12556268 AT
62 AT
*
12556270 TATTGAAGGCGTTTTT
1 TACTGAAGGCGTTTTT
12556286 TGCAATAAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
62 2 0.03
63 34 0.50
64 20 0.29
65 2 0.03
66 10 0.15
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.34
Consensus pattern (63 bp):
TACTGAAGGCGTTTTTGATAGAAAATTGCTTGAATAATCCAGTTAAAAAAATGGATAGGAGAT
Found at i:12557354 original size:25 final size:25
Alignment explanation
Indices: 12557317--12557401 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 25
12557307 TAGCAATGTG
*
12557317 TTCAGAAACATCATTCAACAAATCA
1 TTCAGAAACATCATTCAGCAAATCA
* * * *
12557342 TTTAGAAACATCATTTAGGAAACCA
1 TTCAGAAACATCATTCAGCAAATCA
*
12557367 TTCAAAAACATCATTCAGCAAATCA
1 TTCAGAAACATCATTCAGCAAATCA
12557392 TTCAGCAAAC
1 TTCAG-AAAC
12557402 CAATATCATA
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
25 44 0.92
26 4 0.08
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (25 bp):
TTCAGAAACATCATTCAGCAAATCA
Found at i:12557356 original size:13 final size:13
Alignment explanation
Indices: 12557317--12557401 Score: 72
Period size: 13 Copynumber: 6.7 Consensus size: 13
12557307 TAGCAATGTG
12557317 TTCAGAAACATCA
1 TTCAGAAACATCA
12557330 TTCA-ACAA-ATCA
1 TTCAGA-AACATCA
*
12557342 TTTAGAAACATCA
1 TTCAGAAACATCA
*
12557355 TTTAGGAAAC--CA
1 TTCA-GAAACATCA
*
12557367 TTCAAAAACATCA
1 TTCAGAAACATCA
*
12557380 TTCAGCAA-ATCA
1 TTCAGAAACATCA
12557392 TTCAGCAAAC
1 TTCAG-AAAC
12557402 CAATATCATA
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
11 4 0.07
12 24 0.41
13 25 0.43
14 5 0.09
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.25
Consensus pattern (13 bp):
TTCAGAAACATCA
Found at i:12557392 original size:37 final size:37
Alignment explanation
Indices: 12557328--12557403 Score: 91
Period size: 37 Copynumber: 2.1 Consensus size: 37
12557318 TCAGAAACAT
* * * *
12557328 CATTCAACAAATCATTTAGAAACATCATTTAGGAAAC
1 CATTCAAAAAATCATTCAGAAACATCATTCAGCAAAC
*
12557365 CATTCAAAAACATCATTCAGCAA-ATCATTCAGCAAAC
1 CATTCAAAAA-ATCATTCAGAAACATCATTCAGCAAAC
12557402 CA
1 CA
12557404 ATATCATACA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
37 23 0.70
38 10 0.30
ACGTcount: A:0.46, C:0.24, G:0.07, T:0.24
Consensus pattern (37 bp):
CATTCAAAAAATCATTCAGAAACATCATTCAGCAAAC
Found at i:12558574 original size:63 final size:63
Alignment explanation
Indices: 12558451--12558597 Score: 156
Period size: 63 Copynumber: 2.3 Consensus size: 63
12558441 AAAAAATTAG
* * *** * *
12558451 AAGAAATTACTAAAGGCA-TTTTTCTAGCAAAAACGCCTTTAATAATCTCTTTAAACTTTTACT
1 AAGAAATTATTAAAGGCATTTTTTCTAGCAAAAACGCCTTTAATAATCCCAAAAAAATTTTA-A
* * *
12558514 ATGAAATTATTAAAGGCATTTTTTACT-G-AAAGATGCCTTTAATAATCCCAAAAAAATTTTAA
1 AAGAAATTATTAAAGGCATTTTTT-CTAGCAAAAACGCCTTTAATAATCCCAAAAAAATTTTAA
12558576 AAGCAAATTATTAAAGGCATTT
1 AAG-AAATTATTAAAGGCATTT
12558598 ATCCTCAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
62 2 0.03
63 60 0.86
64 6 0.09
65 2 0.03
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (63 bp):
AAGAAATTATTAAAGGCATTTTTTCTAGCAAAAACGCCTTTAATAATCCCAAAAAAATTTTAA
Found at i:12559200 original size:13 final size:13
Alignment explanation
Indices: 12559175--12559209 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
12559165 GCGTATTATG
*
12559175 CAAAAAATGCCTT
1 CAAAAAATTCCTT
*
12559188 CAATAAATTCCTT
1 CAAAAAATTCCTT
12559201 CAAAAAATT
1 CAAAAAATT
12559210 ATACGTAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.29
Consensus pattern (13 bp):
CAAAAAATTCCTT
Found at i:12571595 original size:8 final size:7
Alignment explanation
Indices: 12571568--12571602 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
12571558 TTTTTTCTTC
12571568 AAAATTA
1 AAAATTA
12571575 AAAATTA
1 AAAATTA
12571582 AAAATTA
1 AAAATTA
12571589 AATAATTA
1 AA-AATTA
12571597 ATAAAT
1 A-AAAT
12571603 AGTTTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 16 0.62
8 9 0.35
9 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
AAAATTA
Found at i:12575239 original size:14 final size:15
Alignment explanation
Indices: 12575220--12575248 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12575210 TTTTTGTTTT
12575220 TTTTCAAA-AAAAAA
1 TTTTCAAACAAAAAA
12575234 TTTTCAAACAAAAAA
1 TTTTCAAACAAAAAA
12575249 AAATTTGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (15 bp):
TTTTCAAACAAAAAA
Found at i:12583549 original size:49 final size:49
Alignment explanation
Indices: 12583372--12584045 Score: 808
Period size: 49 Copynumber: 13.8 Consensus size: 49
12583362 ATTTAAAAAT
* * *
12583372 AGATGATATTTTTAAAGTTGTTGAACCTCTACTGAGAGGAGCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
12583421 AGA--AGATGTTTAAAGTTGTTAAGCCTCTGCTGAGATGAGCTTTTT-A
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
*
12583467 AGATGAGATTTTTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCA
1 AGATGAGA--TTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
12583518 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTCAGAGAAGCTTTTCCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * *
12583567 AGAAGAGAATTTTTAAAGTTGTTGAGCCT-TGCTCAGAGAAACTTTTTCA
1 AGATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
12583616 AGATAAAATTTTTAAAGTTGTTGAGCCTCTGCTGAAAGGAGC-TTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
12583664 AGAT-AGAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAACTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * *
12583712 AGATGAGATTCTTAAAGTTATTGAGCCTTTGCTGAGAGGAGCTTTTTTA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
12583761 AGATAAAAATTTTAAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCA
1 AGAT-GAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
12583811 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTCAGAGGAACTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
12583860 AAAAGAGAATTTTTAAAGTTGTAGAGCCTCTGCTGAGAGAAACTTTTTCA
1 AGATGAG-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * *
12583910 AGATGAGATTCTTAAAGTTGTTGAGCATTTGCTGAGATGAGCTTTTTCA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
12583959 AGATGAAAATTTTAAAAGTTGTTGAGCCTCTGCTGAAATGAGCTTTTTTA
1 AGATG-AGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
12584009 AGA-GA-A-TTTTAAAGTTATTGAGCCTCTGCTCAGAGGA
1 AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGA
12584046 ACCTTTTAAA
Statistics
Matches: 535, Mismatches: 78, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
46 30 0.06
47 69 0.13
48 45 0.08
49 202 0.38
50 180 0.34
51 9 0.02
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (49 bp):
AGATGAGATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
Found at i:12583583 original size:99 final size:100
Alignment explanation
Indices: 12583379--12584052 Score: 806
Period size: 99 Copynumber: 6.9 Consensus size: 100
12583369 AATAGATGAT
* * * *
12583379 ATTTTTAAAGTTGTTGAACCTCTACTGAGAGGAGCTTTTTCAAGA--AGATGTTTAAAGTTGTTA
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
* *
12583442 AGCCTCTGCTGAGATG-AGCTTTTT-AAGATGAGA
66 AGCCTCTGCTGAGAGGAAGCTTTTTCAAGAAGAGA
* *
12583475 TTTTTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTT
1 -ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTT
* *
12583540 GAGCCTCTGCTCAGA-GAAGCTTTTCCAAGAAGAGA
65 GAGCCTCTGCTGAGAGGAAGCTTTTTCAAGAAGAGA
* * * * *
12583575 ATTTTTAAAGTTGTTGAGCCT-TGCTCAGAGAAACTTTTTCAAGATAAAATTTTTAAAGTTGTTG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
* *
12583639 AGCCTCTGCTGAAAGG-AGC-TTTTCAAG-ATAGA
66 AGCCTCTGCTGAGAGGAAGCTTTTTCAAGAAGAGA
* * * *
12583671 A-TTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAACTTTTTCAAGATGAGATTCTTAAAGTTATTG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
* * *
12583735 AGCCTTTGCTGAGAGG-AGCTTTTTTAAGATA-AAA
66 AGCCTCTGCTGAGAGGAAGCTTTTTCAAGA-AGAGA
* * *
12583769 ATTTTAAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
* *
12583834 AGCCTCTGCTCAGAGGAA-CTTTTTCAAAAAGAGA
66 AGCCTCTGCTGAGAGGAAGCTTTTTCAAGAAGAGA
* * * *
12583868 ATTTTTAAAGTTGTAGAGCCTCTGCTGAGAGAAACTTTTTCAAGATGAGATTCTTAAAGTTGTTG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
* * * * *
12583933 AGCATTTGCTGAGATG-AGCTTTTTCAAGATGAAA
66 AGCCTCTGCTGAGAGGAAGCTTTTTCAAGAAGAGA
* * * * *
12583967 ATTTTAAAAGTTGTTGAGCCTCTGCTGAAATGAGCTTTTTTAAGA-GA-A-TTTTAAAGTTATTG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
* *
12584029 AGCCTCTGCTCAGAGGAACCTTTT
66 AGCCTCTGCTGAGAGGAAGCTTTT
12584053 AAATTTTCGA
Statistics
Matches: 492, Mismatches: 71, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
95 19 0.04
96 82 0.17
97 62 0.13
98 61 0.12
99 259 0.53
100 9 0.02
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (100 bp):
ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGAGATTTTTAAAGTTGTTG
AGCCTCTGCTGAGAGGAAGCTTTTTCAAGAAGAGA
Found at i:12584243 original size:3 final size:3
Alignment explanation
Indices: 12584237--12584286 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
12584227 TGTTATTATT
12584237 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
12584285 AT
1 AT
12584287 TATTACTATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:12584291 original size:3 final size:3
Alignment explanation
Indices: 12584285--12584323 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
12584275 CATCATCATC
*
12584285 ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
12584324 TTGTTTCTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:12584354 original size:10 final size:10
Alignment explanation
Indices: 12584322--12584365 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
12584312 ATTATTATTA
*
12584322 TTTTGTTTCT
1 TTTTCTTTCT
12584332 TTTCTCTTT-T
1 TTT-TCTTTCT
12584342 TTTTCTTTCT
1 TTTTCTTTCT
*
12584352 TTTTCCTTCT
1 TTTTCTTTCT
12584362 TTTT
1 TTTT
12584366 TTCCTTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 5 0.17
10 21 0.70
11 4 0.13
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:12587697 original size:23 final size:22
Alignment explanation
Indices: 12587662--12587710 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
12587652 TAAATTTTTA
* *
12587662 TTTTTCTACCAAAATTTGATTCT
1 TTTTTCTAACAAAATTTAATT-T
*
12587685 TTTTTTTAACAAAATTTAATTT
1 TTTTTCTAACAAAATTTAATTT
12587707 TTTT
1 TTTT
12587711 CCTTTCTAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 5 0.22
23 18 0.78
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTTTCTAACAAAATTTAATTT
Found at i:12594926 original size:31 final size:31
Alignment explanation
Indices: 12594870--12594929 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
12594860 CTAATGACCT
* * *
12594870 AATTAGAGTGGAAACTTGAGTTGTATTACCC
1 AATTAGAGTAGAAACTTAAGCTGTATTACCC
*
12594901 AATTGGAGTAGAAACTTAAGCTGTATTAC
1 AATTAGAGTAGAAACTTAAGCTGTATTAC
12594930 GTATGACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (31 bp):
AATTAGAGTAGAAACTTAAGCTGTATTACCC
Found at i:12600165 original size:20 final size:20
Alignment explanation
Indices: 12600124--12600167 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
12600114 TATTCTTTTG
*
12600124 GTAATGACTAAAATTCATCA
1 GTAATGACTAAAATTCACCA
12600144 GTAAT-ACTAAAATTCTACCA
1 GTAATGACTAAAATTC-ACCA
12600164 GTAA
1 GTAA
12600168 AATCCATTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (20 bp):
GTAATGACTAAAATTCACCA
Found at i:12605152 original size:9 final size:9
Alignment explanation
Indices: 12605138--12605170 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
12605128 CAACAAATCT
12605138 ATAAAAAAA
1 ATAAAAAAA
12605147 ATAAAAAAAA
1 AT-AAAAAAA
12605157 ATAAAAAAA
1 ATAAAAAAA
12605166 A-AAAA
1 ATAAAA
12605171 CTTAAAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 4 0.17
9 10 0.43
10 9 0.39
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (9 bp):
ATAAAAAAA
Found at i:12605168 original size:11 final size:10
Alignment explanation
Indices: 12605140--12605167 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
12605130 ACAAATCTAT
12605140 AAAAAAAATA
1 AAAAAAAATA
12605150 AAAAAAAATA
1 AAAAAAAATA
12605160 AAAAAAAA
1 AAAAAAAA
12605168 AAACTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.93, C:0.00, G:0.00, T:0.07
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:12607746 original size:63 final size:63
Alignment explanation
Indices: 12607674--12607859 Score: 187
Period size: 75 Copynumber: 2.8 Consensus size: 63
12607664 CCAAAAATGC
*
12607674 CTTAAATAATTCCCTTTAAAAAAATAAAAAAAATTATTTAAGGCATTTTTTATTTAGAAACGT
1 CTTAAATAATTCCCTTTAAAAAAATAAAAGAAATTATTTAAGGCATTTTTTATTTAGAAACGT
*
12607737 CTTAAATAATCTCTTTTTTAATTCCCTTTAAAAAAATAAAAGAAATTATTTAAGACATTTTTTAT
1 CTT--A-AA---------TAATTCCCTTTAAAAAAATAAAAGAAATTATTTAAGGCATTTTTTAT
12607802 TTAGAAACGT
54 TTAGAAACGT
* * * * *
12607812 CTTAAATAA-TCTCTTTTAAAAAAT-GAAGAGATTATTTAAGGTATTTTT
1 CTTAAATAATTCCCTTTAAAAAAATAAAAGAAATTATTTAAGGCATTTTT
12607860 ATAAATAATC
Statistics
Matches: 103, Mismatches: 8, Indels: 26
0.75 0.06 0.19
Matches are distributed among these distances:
61 20 0.19
62 13 0.13
63 6 0.06
65 1 0.01
66 2 0.02
72 2 0.02
73 1 0.01
75 58 0.56
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.41
Consensus pattern (63 bp):
CTTAAATAATTCCCTTTAAAAAAATAAAAGAAATTATTTAAGGCATTTTTTATTTAGAAACGT
Found at i:12607762 original size:75 final size:75
Alignment explanation
Indices: 12607680--12607828 Score: 280
Period size: 75 Copynumber: 2.0 Consensus size: 75
12607670 ATGCCTTAAA
*
12607680 TAATTCCCTTTAAAAAAATAAAAAAAATTATTTAAGGCATTTTTTATTTAGAAACGTCTTAAATA
1 TAATTCCCTTTAAAAAAATAAAAAAAATTATTTAAGACATTTTTTATTTAGAAACGTCTTAAATA
12607745 ATCTCTTTTT
66 ATCTCTTTTT
*
12607755 TAATTCCCTTTAAAAAAATAAAAGAAATTATTTAAGACATTTTTTATTTAGAAACGTCTTAAATA
1 TAATTCCCTTTAAAAAAATAAAAAAAATTATTTAAGACATTTTTTATTTAGAAACGTCTTAAATA
12607820 ATCTCTTTT
66 ATCTCTTTT
12607829 AAAAAATGAA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 72 1.00
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (75 bp):
TAATTCCCTTTAAAAAAATAAAAAAAATTATTTAAGACATTTTTTATTTAGAAACGTCTTAAATA
ATCTCTTTTT
Found at i:12611845 original size:6 final size:6
Alignment explanation
Indices: 12611834--12611878 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
12611824 TTAAACAATG
* * *
12611834 AAAATA AAAAT- AAAATA AAAATA AAAACA AAAACA AAAACA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
12611879 GTGAAAGTGG
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
5 5 0.14
6 32 0.86
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (6 bp):
AAAATA
Found at i:12611850 original size:11 final size:11
Alignment explanation
Indices: 12611834--12611859 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
12611824 TTAAACAATG
12611834 AAAATAAAAAT
1 AAAATAAAAAT
12611845 AAAATAAAAAT
1 AAAATAAAAAT
12611856 AAAA
1 AAAA
12611860 ACAAAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:12614522 original size:147 final size:145
Alignment explanation
Indices: 12614283--12614775 Score: 503
Period size: 147 Copynumber: 3.4 Consensus size: 145
12614273 AAGAAAGGCA
* * * * ** *** * *
12614283 AAATTACCTAAATACCATTAT-AGAGATATTTTCGTAATTTGATCTTTTTGAGCTTAGATGTTCA
1 AAATTACCAAAATACCCTTATAAG-GGTATTTTTGTAATTTGGCCTTCCCGAGCTCAGATTTTCA
* * *
12614347 TGAAACTTTTTAGATCTTAATGTTATAATATTTCATGATTTTTTTGTGCATTTGAAATCATAGTA
65 TGAAACTTTTTAGATCTCAAT-TTATAATATTTCATGATTTTTTTGTGCATTTGAAATCACAGCA
12614412 GT-CCATCGAAAAGTGTG
129 GTACC-TCGAAAAGTGTG
* *
12614429 AAATTACCAAAATACCCTTTATAAGGGTATTTTTGTAATTTGGCCTTCCCAAGCTCATATTTTCA
1 AAATTACCAAAATACCC-TTATAAGGGTATTTTTGTAATTTGGCCTTCCCGAGCTCAGATTTTCA
* * * * *
12614494 TGAAACTTTTCA-AGTCTCAATTTCATAATATTTCATGA-TCTTTGGTGTATTTTAAATCACAGC
65 TGAAACTTTTTAGA-TCTCAATTT-ATAATATTTCATGATTTTTTTGTGCATTTGAAATCACAGC
* * *
12614557 AGTACCCCGAGAAGTGTA
128 AGTACCTCGAAAAGTGTG
* ** * * *
12614575 AAATTACCAAAATACCCTTATAAGGGTATTTTTGTAATTTGACCTTTTCGAGCTTAGATTTTTAC
1 AAATTACCAAAATACCCTTATAAGGGTATTTTTGTAATTTGGCCTTCCCGAGCTCAGATTTTCAT
* * *
12614640 AAAATTTTTTAGATCTCAATTTTATAATATTTTCATGATTTTTTTATGCATTTGAAATCACAGCA
66 GAAACTTTTTAGATCTCAA-TTTATAATA-TTTCATGATTTTTTTGTGCATTTGAAATCACAGCA
*
12614705 GTAGCCT--AAGAGGTGTG
129 GTA-CCTCGAA-AAGTGTG
* * * * *
12614722 AAATTACCAAAATACTCTTATAGGGGTATTTTTATATTTTGGCTTTCCCGAGCT
1 AAATTACCAAAATACCCTTATAAGGGTATTTTTGTAATTTGGCCTTCCCGAGCT
12614776 TGGATAACTT
Statistics
Matches: 284, Mismatches: 52, Indels: 21
0.80 0.15 0.06
Matches are distributed among these distances:
145 60 0.21
146 79 0.28
147 141 0.50
148 4 0.01
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (145 bp):
AAATTACCAAAATACCCTTATAAGGGTATTTTTGTAATTTGGCCTTCCCGAGCTCAGATTTTCAT
GAAACTTTTTAGATCTCAATTTATAATATTTCATGATTTTTTTGTGCATTTGAAATCACAGCAGT
ACCTCGAAAAGTGTG
Found at i:12617907 original size:16 final size:16
Alignment explanation
Indices: 12617877--12617919 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
12617867 GTTCAATAAA
*
12617877 AAATTTACATCATTTT
1 AAATTTAAATCATTTT
* *
12617893 TAATTTAAATTATTTT
1 AAATTTAAATCATTTT
12617909 AATATTTAAAT
1 AA-ATTTAAAT
12617920 ATTAAAATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (16 bp):
AAATTTAAATCATTTT
Found at i:12618608 original size:39 final size:40
Alignment explanation
Indices: 12618534--12618609 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
12618524 TATTTGAAAT
**
12618534 AATTTATTAAATTTAGTAAATAAAAATTATCTGATAATAA
1 AATTTATTAAATTTAGTAAATAAAAATTAAATGATAATAA
* *
12618574 AATTTTTTAATTTTA-TAAAT-AAAATTAAAATGATAA
1 AATTTATTAAATTTAGTAAATAAAAATT-AAATGATAA
12618610 CTTATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 6 0.19
39 12 0.39
40 13 0.42
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.42
Consensus pattern (40 bp):
AATTTATTAAATTTAGTAAATAAAAATTAAATGATAATAA
Found at i:12619330 original size:15 final size:15
Alignment explanation
Indices: 12619292--12619321 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12619282 TTTAATATTT
12619292 ATATTAAAATAATTA
1 ATATTAAAATAATTA
*
12619307 ATATTAAAATTATTA
1 ATATTAAAATAATTA
12619322 TTTTTAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATTAAAATAATTA
Found at i:12619557 original size:14 final size:13
Alignment explanation
Indices: 12619539--12619566 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
12619529 AAAAAATAAA
12619539 ATTTTTTAAATTT
1 ATTTTTTAAATTT
12619552 ATTTTTTAAATTT
1 ATTTTTTAAATTT
12619565 AT
1 AT
12619567 AAAATTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTTTTTAAATTT
Found at i:12619603 original size:29 final size:29
Alignment explanation
Indices: 12619527--12619603 Score: 68
Period size: 29 Copynumber: 2.7 Consensus size: 29
12619517 TTAGATTTTA
*
12619527 TAAAAAAATAAAATTTTTT-AAATTTATT
1 TAAAAAAATTAAATTTTTTAAAATTTATT
*** * **
12619555 TTTTAAATTTATAA-AATTTAAAATTTATT
1 TAAAAAAATTA-AATTTTTTAAAATTTATT
12619584 TAAAAAAATTAAATTTTTTA
1 TAAAAAAATTAAATTTTTTA
12619604 CCACTTAACC
Statistics
Matches: 33, Mismatches: 13, Indels: 5
0.65 0.25 0.10
Matches are distributed among these distances:
28 11 0.33
29 22 0.67
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (29 bp):
TAAAAAAATTAAATTTTTTAAAATTTATT
Found at i:12619809 original size:6 final size:6
Alignment explanation
Indices: 12619798--12619830 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
12619788 GAAAAGTGAG
12619798 GTGAAT GTGAAT GTGAAT GTGAAT GTGAAT GTG
1 GTGAAT GTGAAT GTGAAT GTGAAT GTGAAT GTG
12619831 TACTCTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.33
Consensus pattern (6 bp):
GTGAAT
Found at i:12621934 original size:92 final size:92
Alignment explanation
Indices: 12621777--12621962 Score: 372
Period size: 92 Copynumber: 2.0 Consensus size: 92
12621767 ATCCCTAAAC
12621777 TGAGTATTTATCTATTTGATTAATTGTTGGCCGTTAGCTTTTCATTATGAAAACTAGTAAAGTCT
1 TGAGTATTTATCTATTTGATTAATTGTTGGCCGTTAGCTTTTCATTATGAAAACTAGTAAAGTCT
12621842 CTATGCTAGTACAACAAAATTCTTTAA
66 CTATGCTAGTACAACAAAATTCTTTAA
12621869 TGAGTATTTATCTATTTGATTAATTGTTGGCCGTTAGCTTTTCATTATGAAAACTAGTAAAGTCT
1 TGAGTATTTATCTATTTGATTAATTGTTGGCCGTTAGCTTTTCATTATGAAAACTAGTAAAGTCT
12621934 CTATGCTAGTACAACAAAATTCTTTAA
66 CTATGCTAGTACAACAAAATTCTTTAA
12621961 TG
1 TG
12621963 TTTTCTCATT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 94 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (92 bp):
TGAGTATTTATCTATTTGATTAATTGTTGGCCGTTAGCTTTTCATTATGAAAACTAGTAAAGTCT
CTATGCTAGTACAACAAAATTCTTTAA
Found at i:12622091 original size:36 final size:38
Alignment explanation
Indices: 12621994--12622091 Score: 88
Period size: 36 Copynumber: 2.8 Consensus size: 38
12621984 TAAAAAAATT
* * *
12621994 ATTTTATTTTATTT-ATTATTTA-ATTTGTACATCATA
1 ATTTTATTTTATTTCATTTTTTATATTTTTTCATCATA
* *
12622030 ATTGTA-TTTACTTCA--TTTT-TA-TTTTTCAT-A-A
1 ATTTTATTTTATTTCATTTTTTATATTTTTTCATCATA
12622061 ATTTTATTTTATTTCATTTTTTATATTTTTT
1 ATTTTATTTTATTTCATTTTTTATATTTTTT
12622092 TGGAAACAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
31 6 0.12
32 9 0.19
33 6 0.12
34 8 0.17
35 8 0.17
36 11 0.23
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (38 bp):
ATTTTATTTTATTTCATTTTTTATATTTTTTCATCATA
Found at i:12622605 original size:3 final size:3
Alignment explanation
Indices: 12622597--12622627 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
12622587 AAGTAGAACT
12622597 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
12622628 TATTATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:12622710 original size:3 final size:3
Alignment explanation
Indices: 12622702--12622735 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
12622692 AGTAAGTGGA
12622702 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT A
1 ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT ACT A
12622736 ATAATAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.32, G:0.00, T:0.32
Consensus pattern (3 bp):
ACT
Found at i:12622740 original size:3 final size:3
Alignment explanation
Indices: 12622734--12622773 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
12622724 CTACTACTAC
12622734 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
12622774 GTTACGCTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:12625001 original size:63 final size:63
Alignment explanation
Indices: 12624894--12625026 Score: 162
Period size: 63 Copynumber: 2.1 Consensus size: 63
12624884 TTTAGGGTTA
* * *
12624894 ATATTTTTATGAAAAGATTATTTAAGGCATTTTTGTATAGAAAATGCT-TCAAATAATCTTTTT
1 ATATTTTTATGAAAAGATTATTTAAGGCATTTATGTACAAAAAATG-TATCAAATAATCTTTTT
* ** **
12624957 ATATTTTTAT-AAATGGATTATTTAAGGTGTTTATGTACAAAAAATGTATTGAATAATCTTTTT
1 ATATTTTTATGAAA-AGATTATTTAAGGCATTTATGTACAAAAAATGTATCAAATAATCTTTTT
12625020 ATATTTT
1 ATATTTT
12625027 AGGGTTTAGG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
62 4 0.07
63 56 0.93
ACGTcount: A:0.36, C:0.05, G:0.11, T:0.48
Consensus pattern (63 bp):
ATATTTTTATGAAAAGATTATTTAAGGCATTTATGTACAAAAAATGTATCAAATAATCTTTTT
Found at i:12625045 original size:84 final size:84
Alignment explanation
Indices: 12624957--12625110 Score: 238
Period size: 84 Copynumber: 1.8 Consensus size: 84
12624947 TAATCTTTTT
* * *
12624957 ATATTTTTAT-AAATGGATTATTTAAGGTGTTTATGTACAAAAAATGTATTGAATAATCTTTTTA
1 ATATTTTTATAAAAT-GATTATTTAAAGTATTTATGTACAAAAAATGTATTAAATAATCTTTTTA
12625021 TATTTTAGGGTTTAGGGTTA
65 TATTTTAGGGTTTAGGGTTA
* * *
12625041 ATATTTTTATAAAATGATTATTTAAAGTATTTATGTACAGAAATTGTCTTAAATAATCTTTTTAT
1 ATATTTTTATAAAATGATTATTTAAAGTATTTATGTACAAAAAATGTATTAAATAATCTTTTTAT
12625106 ATTTT
66 ATTTT
12625111 GCAAATAGAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
84 59 0.94
85 4 0.06
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.49
Consensus pattern (84 bp):
ATATTTTTATAAAATGATTATTTAAAGTATTTATGTACAAAAAATGTATTAAATAATCTTTTTAT
ATTTTAGGGTTTAGGGTTA
Found at i:12625060 original size:147 final size:147
Alignment explanation
Indices: 12624787--12625134 Score: 486
Period size: 147 Copynumber: 2.4 Consensus size: 147
12624777 TGGCATGAAG
* * *
12624787 AAATGCCTTAAATAATCTTTTTTTATTTTTATAAATAGATTATTTAAGGTGTTTTCTATACAGAA
1 AAATGCCTTAAATAATCTTTTTATATTTTTATAAATAGATTATTTAAGGTG-TTTATATACAAAA
*
12624852 AATGCCTTAAATAATCTTTTTATATTTTAGGATTTAGGGTTAATATTTTTATGAAAAGATTATTT
65 AATGCATTAAATAATCTTTTTATATTTTAGGATTTAGGGTTAATATTTTTATGAAAAGATTATTT
* * *
12624917 AAGGCATTTTTGTATAGA
130 AAAGCATTTATGTACAGA
* *
12624935 AAATG-CTTCAAATAATCTTTTTATATTTTTATAAATGGATTATTTAAGGTGTTTATGTACAAAA
1 AAATGCCTT-AAATAATCTTTTTATATTTTTATAAATAGATTATTTAAGGTGTTTATATACAAAA
* * *
12624999 AATGTATTGAATAATCTTTTTATATTTTAGGGTTTAGGGTTAATATTTTTAT-AAAATGATTATT
65 AATGCATTAAATAATCTTTTTATATTTTAGGATTTAGGGTTAATATTTTTATGAAAA-GATTATT
*
12625063 TAAAGTATTTATGTACAGA
129 TAAAGCATTTATGTACAGA
* * ** *
12625082 AATTGTCTTAAATAATCTTTTTATA-TTTTGCAAATAGATTATTTAAAGTGTTT
1 AAATGCCTTAAATAATCTTTTTATATTTTTATAAATAGATTATTTAAGGTGTTT
12625135 CTGTCCCTTA
Statistics
Matches: 179, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
146 28 0.16
147 103 0.58
148 48 0.27
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.48
Consensus pattern (147 bp):
AAATGCCTTAAATAATCTTTTTATATTTTTATAAATAGATTATTTAAGGTGTTTATATACAAAAA
ATGCATTAAATAATCTTTTTATATTTTAGGATTTAGGGTTAATATTTTTATGAAAAGATTATTTA
AAGCATTTATGTACAGA
Found at i:12627950 original size:5 final size:5
Alignment explanation
Indices: 12627933--12627974 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
12627923 TTATATTTTC
* *
12627933 TATTT TGATTT TATTT TA-TC TATTT TATTT CATTT TATTT TA
1 TATTT T-ATTT TATTT TATTT TATTT TATTT TATTT TATTT TA
12627975 GACTTTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
4 3 0.10
5 23 0.74
6 5 0.16
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.71
Consensus pattern (5 bp):
TATTT
Found at i:12627967 original size:19 final size:20
Alignment explanation
Indices: 12627931--12627970 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
12627921 CATTATATTT
*
12627931 TCTATTTTGATTTTATTTTA
1 TCTATTTTGATTTCATTTTA
12627951 TCTATTTT-ATTTCATTTTA
1 TCTATTTTGATTTCATTTTA
12627970 T
1 T
12627971 TTTAGACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (20 bp):
TCTATTTTGATTTCATTTTA
Found at i:12640963 original size:20 final size:20
Alignment explanation
Indices: 12640917--12640963 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
12640907 ATTGAAGAGC
*
12640917 TATATCGTTGAAGATCTGTA
1 TATATCTTTGAAGATCTGTA
12640937 TATATCTTTGAAGATCTGTA
1 TATATCTTTGAAGATCTGTA
12640957 TATATCT
1 TATATCT
12640964 ATTATTTGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.45
Consensus pattern (20 bp):
TATATCTTTGAAGATCTGTA
Found at i:12641429 original size:83 final size:83
Alignment explanation
Indices: 12641328--12641500 Score: 199
Period size: 83 Copynumber: 2.1 Consensus size: 83
12641318 CCTACAACCC
* * * * * *
12641328 TCATCGAGCCTTTCTTGAAATATTCTCA-TCAGTGGAAAATTTGAATTATCAATCAC-CGCATCC
1 TCATCAAGCCTTTCTTGAAATATGCCCACT-AGTGAAAAAATTGAATTACCAATCACGC-CATCC
*
12641391 ACAAATATTTCAAATAGTAA
64 ACAAATATTCCAAATAGTAA
* *
12641411 TCATCAAGCC-TTCTTTGAAATATGCCCACTAGTGAAAAAATTGAATTGCCAATCATGCCATCCA
1 TCATCAAGCCTTTC-TTGAAATATGCCCACTAGTGAAAAAATTGAATTACCAATCACGCCATCCA
* *
12641475 TAAGTATTCCAAATAGTAA
65 CAAATATTCCAAATAGTAA
12641494 TCATCAA
1 TCATCAA
12641501 TTTACAAGAG
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
82 3 0.04
83 71 0.93
84 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (83 bp):
TCATCAAGCCTTTCTTGAAATATGCCCACTAGTGAAAAAATTGAATTACCAATCACGCCATCCAC
AAATATTCCAAATAGTAA
Found at i:12641978 original size:37 final size:38
Alignment explanation
Indices: 12641903--12641983 Score: 128
Period size: 38 Copynumber: 2.2 Consensus size: 38
12641893 CATGAGAAAG
*
12641903 ACATTTGCATTCAAATTTGCATCATAAAAAAGACATTC
1 ACATTTGCATTCAAATCTGCATCATAAAAAAGACATTC
* *
12641941 ACATTTGCATTCACATCTGTATCA-AAAAAAGACATTC
1 ACATTTGCATTCAAATCTGCATCATAAAAAAGACATTC
12641978 ACATTT
1 ACATTT
12641984 ACATCACTTG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
37 19 0.47
38 21 0.52
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (38 bp):
ACATTTGCATTCAAATCTGCATCATAAAAAAGACATTC
Found at i:12642061 original size:164 final size:165
Alignment explanation
Indices: 12641858--12642157 Score: 399
Period size: 164 Copynumber: 1.8 Consensus size: 165
12641848 AAACATTTGT
** * * * * *
12641858 ATTTGCATCACTTGCATTCGTACTTACATGTGTATCATGAGAAAGACATTTGCATTCAAATTTGC
1 ATTTGCATCACTCACATTCGTACTTACATATGCATCATGAGAAAAACATTTGCATTCAAATCTAC
* *
12641923 ATCATAAAAAAGACATTCAC-ATTTGCATTCAC-ATCTGTATCA-AAAAAAGACATTCACATTTA
66 ATCACAAAAAAGACATTCACAATTTGCA-TCACTATCTGCATCACAAAAAAG-CATTCACATTTA
12641985 CATCACTTGCATCTACATCATAAAAAAGGATATTCGC
129 CATCACTTGCATCTACATCATAAAAAAGGATATTCGC
* * * *
12642022 ATTTGCATCACTCACATTCGTACTTGCTTATGCATCATGAGAAAAACATTTGCATTCATATCTAT
1 ATTTGCATCACTCACATTCGTACTTACATATGCATCATGAGAAAAACATTTGCATTCAAATCTAC
*
12642087 ATCACAAAAAAGACATTCGCAATTTGCATCACTTGTATCTGCATCACAAAAAAGCATTCACATTT
66 ATCACAAAAAAGACATTCACAATTTGCATCAC---TATCTGCATCACAAAAAAGCATTCACATTT
*
12642152 GCATCA
128 ACATCA
12642158 TTCGCATTCA
Statistics
Matches: 115, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
164 76 0.66
165 7 0.06
168 25 0.22
169 7 0.06
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (165 bp):
ATTTGCATCACTCACATTCGTACTTACATATGCATCATGAGAAAAACATTTGCATTCAAATCTAC
ATCACAAAAAAGACATTCACAATTTGCATCACTATCTGCATCACAAAAAAGCATTCACATTTACA
TCACTTGCATCTACATCATAAAAAAGGATATTCGC
Found at i:12642090 original size:126 final size:125
Alignment explanation
Indices: 12641941--12642380 Score: 442
Period size: 126 Copynumber: 3.5 Consensus size: 125
12641931 AAAGACATTC
* * *
12641941 ACATTTGCATTCACATCTGTATCA-AAAAAAGACATTCACATTTACATCACTTGCATCTACATCA
1 ACATTTGCATTCACATCTATATCACAAAAAAGACATTCACATTTGCATCACTTGCATCTGCATCA
* * * *
12642005 TAAAAAAGGATATTCGCATTTGCATCACTCACATTCGTACTTGCTTATGCATCATGAGAAAA
66 -AAAAAAGG-CATTCGCATTTGCATCACTCACATTCATACTTACGTATGCATCATGAGAAAA
* * *
12642067 ACATTTGCATTCATATCTATATCACAAAAAAGACATTCGCAATTTGCATCACTTGTATCTGCATC
1 ACATTTGCATTCACATCTATATCACAAAAAAGACATTCAC-ATTTGCATCACTTGCATCTGCATC
* * * * *
12642132 ACAAAAAA-GCATTCACATTTGCATCATTCGCATTCATACTTACGTGTGCATGATGAGAAAA
65 A-AAAAAAGGCATTCGCATTTGCATCACTCACATTCATACTTACGTATGCATCATGAGAAAA
* * * * *
12642193 ACATTTGCATTCAGC-TCAACATTACAAAAAAGACATTTTA-ATTTGCATCGCTTGCATCTGCAT
1 ACATTTGCATTCA-CATCTATATCACAAAAAAGACA-TTCACATTTGCATCACTTGCATCTGCAT
*** * * * *
12642256 -AAAAAAAGGGGCATTCGCATTTGCATCACTTGTATTTACACTTACGTGTGTATCATGA-AAAA
64 CAAAAAAA--GGCATTCGCATTTGCATCACTCACATTCATACTTACGTATGCATCATGAGAAAA
** * ** * * *
12642318 GACATTTGCATTTGCATTTGCATCACAAGAAAGACATTCACATTTGCATCATTTGCATTTGCA
1 -ACATTTGCATTCACATCTATATCACAAAAAAGACATTCACATTTGCATCACTTGCATCTGCA
12642381 CTATACGAAA
Statistics
Matches: 261, Mismatches: 43, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
123 6 0.02
124 1 0.00
125 29 0.11
126 180 0.69
127 17 0.07
128 28 0.11
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (125 bp):
ACATTTGCATTCACATCTATATCACAAAAAAGACATTCACATTTGCATCACTTGCATCTGCATCA
AAAAAAGGCATTCGCATTTGCATCACTCACATTCATACTTACGTATGCATCATGAGAAAA
Found at i:12642407 original size:26 final size:26
Alignment explanation
Indices: 12642371--12642420 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
12642361 TTGCATCATT
* *
12642371 TGCATTTGCACTATACGAAAGAAATC
1 TGCATTTGCACCATAAGAAAGAAATC
12642397 TGCATTTGCACCATAAGAAAGAAA
1 TGCATTTGCACCATAAGAAAGAAA
12642421 ATTTCATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (26 bp):
TGCATTTGCACCATAAGAAAGAAATC
Found at i:12642428 original size:26 final size:25
Alignment explanation
Indices: 12642368--12642432 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
12642358 CATTTGCATC
* *
12642368 ATTTGCATTTGCACTATACGAAAGAA
1 ATTT-CATTTGCACCATAAGAAAGAA
*
12642394 ATCTGCATTTGCACCATAAGAAAGAAA
1 AT-TTCATTTGCACCATAAGAAAG-AA
12642421 ATTTCATTTGCA
1 ATTTCATTTGCA
12642433 TCACAGCATT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 28 0.85
27 5 0.15
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (25 bp):
ATTTCATTTGCACCATAAGAAAGAA
Found at i:12642571 original size:18 final size:18
Alignment explanation
Indices: 12642545--12642593 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
12642535 ATTCATATTC
* *
12642545 TTGCATTTGTATTGACAT
1 TTGCATTTGCATCGACAT
*
12642563 TTGCTTTTGCATCGACAT
1 TTGCATTTGCATCGACAT
* *
12642581 TTCCATTAGCATC
1 TTGCATTTGCATC
12642594 ATTTGATAAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (18 bp):
TTGCATTTGCATCGACAT
Found at i:12643076 original size:96 final size:96
Alignment explanation
Indices: 12642951--12643141 Score: 278
Period size: 96 Copynumber: 2.0 Consensus size: 96
12642941 AGATTTTTGA
* *
12642951 AATTTCCAAGACTTTCAGGCAAAACATTTTAAAATTTCCAAGTTTTAACACCTTTATTAC-AACG
1 AATTTCCAAGACCTCCAGGCAAAACATTTTAAAATTTCCAAGTTTTAACACCTTTATTACGAA-G
*
12643015 AGCATTCAAATATTTCAAAGACCTTT-GAGCAT
65 AGCATTCAAAGATTTCAAAGA-CTTTCGAGCAT
* * * **
12643047 AATTTCCAAGACCTCCAGGTAAAATATTTTAAATTTTTTAAGTTTTAACACCTTTATTACGAAGA
1 AATTTCCAAGACCTCCAGGCAAAACATTTTAAAATTTCCAAGTTTTAACACCTTTATTACGAAGA
12643112 GCATTCAAAGATTTCAAAGACTTTCGAGCA
66 GCATTCAAAGATTTCAAAGACTTTCGAGCA
12643142 AAACATTTTC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 4 0.05
96 79 0.93
97 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.34
Consensus pattern (96 bp):
AATTTCCAAGACCTCCAGGCAAAACATTTTAAAATTTCCAAGTTTTAACACCTTTATTACGAAGA
GCATTCAAAGATTTCAAAGACTTTCGAGCAT
Found at i:12643262 original size:83 final size:83
Alignment explanation
Indices: 12643139--12643291 Score: 218
Period size: 83 Copynumber: 1.8 Consensus size: 83
12643129 AGACTTTCGA
* ** * * *
12643139 GCAAAACATTTTCAGTTTTTAAAGTTTCAACGCCTCTATTATGA-GAAACATTCAAAGATTTTTT
1 GCAAAACATTTTAAAATTTTAAAGTTTCAACACCTCTATTACGATG-AACATTCAAAGATTTTTG
12643203 AGATTTCCAAAACCTTTGG
65 AGATTTCCAAAACCTTTGG
* *
12643222 GCAAAACATTTTAAAATTTTAAAGTTTCAACATCTTTATTACGATGAACATTCAAAGATTTTTGA
1 GCAAAACATTTTAAAATTTTAAAGTTTCAACACCTCTATTACGATGAACATTCAAAGATTTTTGA
12643287 GATTT
66 GATTT
12643292 TTAAGACCTC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
83 60 0.98
84 1 0.02
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (83 bp):
GCAAAACATTTTAAAATTTTAAAGTTTCAACACCTCTATTACGATGAACATTCAAAGATTTTTGA
GATTTCCAAAACCTTTGG
Found at i:12643569 original size:6 final size:6
Alignment explanation
Indices: 12643554--12643664 Score: 84
Period size: 6 Copynumber: 17.5 Consensus size: 6
12643544 ATTAATTTCC
*
12643554 CAAAAA -AAAAA TAAAAAA CAAAAA -ACAAAA CAAAAA CACAAAA -AAAAA
1 CAAAAA CAAAAA -CAAAAA CAAAAA CA-AAAA CAAAAA CA-AAAA CAAAAA
* * *
12643602 TAAAAA CAAAAA CAAAAA CACAAAA CACAAAG CACAAAA CAAAATA AAACACAA
1 CAAAAA CAAAAA CAAAAA CA-AAAA CA-AAAA CA-AAAA CAAAA-A CAA-A-AA
12643656 CAAAAA CAA
1 CAAAAA CAA
12643665 GAATTTCAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 20
0.77 0.05 0.17
Matches are distributed among these distances:
5 10 0.11
6 42 0.47
7 32 0.36
8 4 0.04
9 1 0.01
ACGTcount: A:0.79, C:0.17, G:0.01, T:0.03
Consensus pattern (6 bp):
CAAAAA
Found at i:12643605 original size:37 final size:37
Alignment explanation
Indices: 12643556--12643632 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
12643546 TAATTTCCCA
12643556 AAAAAAAAATAAAAAACAAAAA-ACAAAACA-AAAACAC
1 AAAAAAAAAT-AAAAACAAAAACA-AAAACACAAAACAC
12643593 AAAAAAAAATAAAAACAAAAACAAAAACACAAAACAC
1 AAAAAAAAATAAAAACAAAAACAAAAACACAAAACAC
12643630 AAA
1 AAA
12643633 GCACAAAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
36 17 0.45
37 21 0.55
ACGTcount: A:0.83, C:0.14, G:0.00, T:0.03
Consensus pattern (37 bp):
AAAAAAAAATAAAAACAAAAACAAAAACACAAAACAC
Found at i:12643613 original size:7 final size:7
Alignment explanation
Indices: 12643555--12643645 Score: 66
Period size: 7 Copynumber: 13.3 Consensus size: 7
12643545 TTAATTTCCC
12643555 AAAA-AA
1 AAAACAA
*
12643561 AAAATAA
1 AAAACAA
12643568 AAAACAA
1 AAAACAA
12643575 AAAAC--
1 AAAACAA
12643580 AAAACAA
1 AAAACAA
12643587 AAACACAA
1 AAA-ACAA
12643595 AAAA-AA
1 AAAACAA
*
12643601 ATAAAAACA
1 A-AAACA-A
12643610 AAAAC-A
1 AAAACAA
*
12643616 AAAACAC
1 AAAACAA
*
12643623 AAAACAC
1 AAAACAA
* *
12643630 AAAGCAC
1 AAAACAA
12643637 AAAACAA
1 AAAACAA
12643644 AA
1 AA
12643646 TAAAACACAA
Statistics
Matches: 71, Mismatches: 6, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
5 5 0.07
6 13 0.18
7 40 0.56
8 11 0.15
9 2 0.03
ACGTcount: A:0.81, C:0.15, G:0.01, T:0.02
Consensus pattern (7 bp):
AAAACAA
Found at i:12643743 original size:37 final size:37
Alignment explanation
Indices: 12643668--12643783 Score: 146
Period size: 36 Copynumber: 3.2 Consensus size: 37
12643658 AAAACAAGAA
* * *
12643668 TTTCAAAGTTTCAAAGCCTCTGTTT-GGGGGATCCAT
1 TTTCAAAGTTTCAAAGCCTCTATTTGGGGGGAGCAAT
*
12643704 TTTCAAAGTTTCAAAGCCTCTATTTGGGGGGAGCTAT
1 TTTCAAAGTTTCAAAGCCTCTATTTGGGGGGAGCAAT
* * * *
12643741 TTTC-AAGTTTCTAAGCCTCAATTTGGAGGTAGCAAT
1 TTTCAAAGTTTCAAAGCCTCTATTTGGGGGGAGCAAT
12643777 TTTCAAA
1 TTTCAAA
12643784 CAAGATTTTA
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
36 55 0.79
37 15 0.21
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (37 bp):
TTTCAAAGTTTCAAAGCCTCTATTTGGGGGGAGCAAT
Found at i:12644234 original size:21 final size:21
Alignment explanation
Indices: 12644185--12644235 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
12644175 CAAAGTCAAC
*
12644185 CTTGGTCAAAATTACATAAAA
1 CTTGGTCAAAATGACATAAAA
* *
12644206 CTTAGTCAAAATGA-ATAGAA
1 CTTGGTCAAAATGACATAAAA
12644226 CTGTGGTCAA
1 CT-TGGTCAA
12644236 TCTTTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (21 bp):
CTTGGTCAAAATGACATAAAA
Found at i:12644733 original size:146 final size:144
Alignment explanation
Indices: 12644331--12644733 Score: 451
Period size: 146 Copynumber: 2.8 Consensus size: 144
12644321 TAGGAAAGTA
* * *
12644331 TAAAATTACTAAAATACCCCTATAAGGGTATTTTTGTAATTTGGCCTTTCTGAGCTTTGATTTTC
1 TAAAATTACAAAAATACCCCTATAAGGGTATTTTTGTAATTTGACCTTT-TGAGCTTTAATTTTC
* *
12644396 ATG-AAACTCTTTAGTTTCTTAATTTCATAATATTTGATGATTTTTGATGCATTTGAAATCACAA
65 ATGAAAACT-TTTAG-ATCTTAATTTCATAATATTTCATGATTTTTGATGCATTTGAAATCACAA
*
12644460 TCGTACCCTGAAAAATG
128 TCGTACCCTCAAAAATG
* * * * *
12644477 TAAAATTACCAACATACCCTTATAAAGGTATTTTTGTAATTT-ATCCTTTTCGAGC-TCAGATTT
1 TAAAATTACAAAAATACCCCTATAAGGGTATTTTTGTAATTTGA-CCTTTT-GAGCTTTA-ATTT
* * *
12644540 TTAT-AAAACATTTTAGGTCTTAATTTCATAATATTTCATGATTTTTTG-TGCATTTGAAATTAC
63 TCATGAAAAC-TTTTAGATCTTAATTTCATAATATTTCATGA-TTTTTGATGCATTTGAAATCAC
12644603 -ATCAGTACCC-CAAAAAGTG
126 AATC-GTACCCTCAAAAA-TG
* * * *
12644622 TGAAATTATGAAAAATACCCCTATAGGGGTATTTTTATAATTTGACCTTTTAGAGCTTTAATTTT
1 TAAAATTA-CAAAAATACCCCTATAAGGGTATTTTTGTAATTTGACCTTTT-GAGCTTTAATTTT
* * *
12644687 CATGAAAACTTTTCAGATCTAAATTTTATAATATTTTATGATTTTTG
64 CATGAAAACTTTT-AGATCTTAATTTCATAATATTTCATGATTTTTG
12644734 GTGTTTTAAA
Statistics
Matches: 217, Mismatches: 27, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
144 8 0.04
145 54 0.25
146 123 0.57
147 32 0.15
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (144 bp):
TAAAATTACAAAAATACCCCTATAAGGGTATTTTTGTAATTTGACCTTTTGAGCTTTAATTTTCA
TGAAAACTTTTAGATCTTAATTTCATAATATTTCATGATTTTTGATGCATTTGAAATCACAATCG
TACCCTCAAAAATG
Found at i:12646164 original size:47 final size:47
Alignment explanation
Indices: 12646095--12646189 Score: 163
Period size: 47 Copynumber: 2.0 Consensus size: 47
12646085 GAAGATACTT
* *
12646095 TTCTAAAAATACTACTAAAGAAATGGAGTATTTACGAAAATATTCAA
1 TTCTAAAAATACTACCAAAGAAATGAAGTATTTACGAAAATATTCAA
*
12646142 TTCTAAAAATACTACCAAAGAAATGAAGTATTTAGGAAAATATTCAA
1 TTCTAAAAATACTACCAAAGAAATGAAGTATTTACGAAAATATTCAA
12646189 T
1 T
12646190 ACAAAATGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (47 bp):
TTCTAAAAATACTACCAAAGAAATGAAGTATTTACGAAAATATTCAA
Found at i:12661174 original size:16 final size:16
Alignment explanation
Indices: 12661155--12661185 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12661145 AAAAAATGGA
12661155 AAAATATTCTTTTGAT
1 AAAATATTCTTTTGAT
*
12661171 AAAATTTTCTTTTGA
1 AAAATATTCTTTTGA
12661186 CATATCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (16 bp):
AAAATATTCTTTTGAT
Found at i:12661733 original size:102 final size:102
Alignment explanation
Indices: 12661552--12661751 Score: 319
Period size: 102 Copynumber: 2.0 Consensus size: 102
12661542 ATTTTTCATG
* *
12661552 TTTGGAAATAATAAAATTGTACATACACTTCATTTCATGTAAAAATATTTGAATGGTAGTGTCAA
1 TTTGAAAATAATAAAATTGTACATACACTTCATTTCATGTAAAAATATTTGAATGGTAGTATCAA
12661617 TTTCATAAAAATTTTGATTTTGAATGTTATTGTTGCA
66 TTTCATAAAAATTTTGATTTTGAATGTTATTGTTGCA
* * * * *
12661654 TTTGAAAATAATAAAGTTGTATATACACTTCATTTCATGTATAAGTATTTGAATGGTAGTATCAG
1 TTTGAAAATAATAAAATTGTACATACACTTCATTTCATGTAAAAATATTTGAATGGTAGTATCAA
* *
12661719 TTTCGTAAAAATTTTTATTTTGAATGTTATTGT
66 TTTCATAAAAATTTTGATTTTGAATGTTATTGT
12661752 ACCTTTCACA
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 89 1.00
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (102 bp):
TTTGAAAATAATAAAATTGTACATACACTTCATTTCATGTAAAAATATTTGAATGGTAGTATCAA
TTTCATAAAAATTTTGATTTTGAATGTTATTGTTGCA
Found at i:12663786 original size:20 final size:19
Alignment explanation
Indices: 12663761--12663809 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
12663751 TCAAAATGAA
12663761 AAAAAAAAGATAAGAAAACC
1 AAAAAAAAGATAAGAAAA-C
* * *
12663781 AAAAAAAAAATCATAAAAC
1 AAAAAAAAGATAAGAAAAC
12663800 AAAAAAAAGA
1 AAAAAAAAGA
12663810 AATATTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.80, C:0.08, G:0.06, T:0.06
Consensus pattern (19 bp):
AAAAAAAAGATAAGAAAAC
Found at i:12663802 original size:19 final size:21
Alignment explanation
Indices: 12663760--12663807 Score: 64
Period size: 19 Copynumber: 2.4 Consensus size: 21
12663750 CTCAAAATGA
12663760 AAAAAAAAAGATAAGAAAACC
1 AAAAAAAAAGATAAGAAAACC
* *
12663781 AAAAAAAAA-ATCATAAAA-C
1 AAAAAAAAAGATAAGAAAACC
12663800 AAAAAAAA
1 AAAAAAAA
12663808 GAAATATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 9 0.36
20 7 0.28
21 9 0.36
ACGTcount: A:0.81, C:0.08, G:0.04, T:0.06
Consensus pattern (21 bp):
AAAAAAAAAGATAAGAAAACC
Found at i:12664868 original size:17 final size:17
Alignment explanation
Indices: 12664848--12664880 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
12664838 AAGTTTGGTT
12664848 TTTTGCAAAATTCATGC
1 TTTTGCAAAATTCATGC
12664865 TTTTGCAAAATTCATG
1 TTTTGCAAAATTCATG
12664881 TTTCATTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TTTTGCAAAATTCATGC
Found at i:12666533 original size:36 final size:36
Alignment explanation
Indices: 12666476--12666579 Score: 117
Period size: 32 Copynumber: 3.0 Consensus size: 36
12666466 CATTTGAATA
* * *
12666476 TCATTAAAATTTTCTTAATGGTGATATTCAAGCTTTT
1 TCATTAATA-TTTCTTGATGGTGATATTCGAGCTTTT
*
12666513 TCATTAATATTTCTTGATGGTGATATTCGAG-ATTT
1 TCATTAATATTTCTTGATGGTGATATTCGAGCTTTT
* *
12666548 TCA--AAT-TTTCTAGATAGTGATATTCGAGCTTT
1 TCATTAATATTTCTTGATGGTGATATTCGAGCTTT
12666580 CTTAAAATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
32 20 0.34
33 5 0.08
35 6 0.10
36 20 0.34
37 8 0.14
ACGTcount: A:0.28, C:0.11, G:0.14, T:0.47
Consensus pattern (36 bp):
TCATTAATATTTCTTGATGGTGATATTCGAGCTTTT
Found at i:12667505 original size:103 final size:104
Alignment explanation
Indices: 12667318--12667507 Score: 233
Period size: 103 Copynumber: 1.8 Consensus size: 104
12667308 ATTTTCAAAA
* * * * * *
12667318 AAATTTTTAAAGTTTCAAGGCCTTTGTTTATAAAAGCATTCATAAACGTCAGAATTTATAAAAAC
1 AAATTTTTAAAATTTCAAGACCTCTGATTATAAAAACATTCATAAACGTCAGAATCTATAAAAAC
*
12667383 TTCAAGCATGATCTCTAAATCCTTGGGGTAAAACATTTT
66 TTCAAGCATAATCTCTAAATCCTTGGGGTAAAACATTTT
* * * *
12667422 AAATTTTTAAAATTTCAATATCTCTGATTATAAAAAC-TTCATAAATGTCA-AGATCTATAAAAT
1 AAATTTTTAAAATTTCAAGACCTCTGATTATAAAAACATTCATAAACGTCAGA-ATCTATAAAAA
*
12667485 CTTTGAA-CATAATCTCTAAATCC
65 C-TTCAAGCATAATCTCTAAATCC
12667508 ATCAAGCAAG
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
102 1 0.01
103 37 0.51
104 34 0.47
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (104 bp):
AAATTTTTAAAATTTCAAGACCTCTGATTATAAAAACATTCATAAACGTCAGAATCTATAAAAAC
TTCAAGCATAATCTCTAAATCCTTGGGGTAAAACATTTT
Found at i:12667829 original size:19 final size:19
Alignment explanation
Indices: 12667788--12667850 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
12667778 TAAAAAGAAT
*
12667788 AAAAAACAACAAAATAATT-A
1 AAAAAAAAACAAAAT--TTCA
*
12667808 AAAATAAAA-AAAATTTCA
1 AAAAAAAAACAAAATTTCA
* *
12667826 AAAAAAAAACCAAATTTTA
1 AAAAAAAAACAAAATTTCA
12667845 AAAAAA
1 AAAAAA
12667851 CCAAAAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.06
18 9 0.25
19 18 0.50
20 7 0.19
ACGTcount: A:0.75, C:0.08, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAAAAAAACAAAATTTCA
Found at i:12671552 original size:41 final size:41
Alignment explanation
Indices: 12671495--12671572 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
12671485 ACTCAATCAA
12671495 ATGCTTTCTCTAAATCAATAAATACCATATGTATATACCAT
1 ATGCTTTCTCTAAATCAATAAATACCATATGTATATACCAT
*
12671536 ATGCTTTCTCTAAATCAATAGATACCATATGTATATA
1 ATGCTTTCTCTAAATCAATAAATACCATATGTATATA
12671573 TTTTTTTCTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.38, C:0.18, G:0.06, T:0.37
Consensus pattern (41 bp):
ATGCTTTCTCTAAATCAATAAATACCATATGTATATACCAT
Found at i:12674557 original size:63 final size:62
Alignment explanation
Indices: 12674490--12674628 Score: 147
Period size: 62 Copynumber: 2.2 Consensus size: 62
12674480 GTACAAGGAG
*
12674490 TTTCTACCCAAAAAAGGTCTTCAATAACTCCTTACAAAAAATTGAATGGGATTA-TTGAAGGCA
1 TTTCTA-CCAAAAAAGGTCTTCAATAACTCATTACAAAAAATTGAATGGGATTACTT-AAGGCA
** * * * * * *
12674553 TTTCTTGTC-AAAAATGTCTTGAATAATTTATTATAAAAAATTGAATGGGATTACTTAAGGCG
1 TTTC-TACCAAAAAAGGTCTTCAATAACTCATTACAAAAAATTGAATGGGATTACTTAAGGCA
12674615 TTTCTGACCAAAAA
1 TTTCT-ACCAAAAA
12674629 TACCTTCAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
61 1 0.02
62 48 0.79
63 11 0.18
64 1 0.02
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (62 bp):
TTTCTACCAAAAAAGGTCTTCAATAACTCATTACAAAAAATTGAATGGGATTACTTAAGGCA
Found at i:12674640 original size:62 final size:62
Alignment explanation
Indices: 12674525--12674641 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 62
12674515 AACTCCTTAC
* ** *
12674525 AAAAAATTGAATGGGATTATTGAAGGCATTTCTTGTCAAAAATGTCTTGAATAATTTATTAT
1 AAAAAATTGAATGGGATTATTGAAGGCATTTCTTGCCAAAAATACCTTCAATAATTTATTAT
*
12674587 AAAAAATTGAATGGGATTACTT-AAGGCGTTTC-TGACCAAAAATACCTTCAATAAT
1 AAAAAATTGAATGGGATTA-TTGAAGGCATTTCTTG-CCAAAAATACCTTCAATAAT
12674642 CTCCTCTCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
61 2 0.04
62 44 0.92
63 2 0.04
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.34
Consensus pattern (62 bp):
AAAAAATTGAATGGGATTATTGAAGGCATTTCTTGCCAAAAATACCTTCAATAATTTATTAT
Found at i:12674739 original size:122 final size:122
Alignment explanation
Indices: 12674540--12674764 Score: 283
Period size: 122 Copynumber: 1.8 Consensus size: 122
12674530 ATTGAATGGG
** ** * *
12674540 ATTATTGAAGGCATTTCTTGTCAAAAATGTCTTGAATAATTTATTATAAAAAATTGAATGGGATT
1 ATTATTGAAGGCATTTCTTGGAAAAAATACCTTGAATAATTTATTATAAAAAATTAAATAGGATT
* * *
12674605 ACTTAAGGCGTTTCTGACCAAAAATACCTTCAATAATCTCCTCTCTTTTTTTTTGTA
66 ACTGAAGGCGTTTATGACCAAAAACACCTTCAATAATCTCCTCTCTTTTTTTTTGTA
*
12674662 ATTATTGAAGGCATTT-TTGGGAAAAAATACCTTGAATAATTTCTTATAAAAAATTAAATCAGG-
1 ATTATTGAAGGCATTTCTT-GGAAAAAATACCTTGAATAATTTATTATAAAAAATTAAAT-AGGA
* * * * *
12674725 TTAGTGAAGTCGTTTATGGCCAAAAACGCCTTGAATAATC
64 TTACTGAAGGCGTTTATGACCAAAAACACCTTCAATAATC
12674765 CCCTTCAATT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
121 2 0.02
122 82 0.95
123 2 0.02
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (122 bp):
ATTATTGAAGGCATTTCTTGGAAAAAATACCTTGAATAATTTATTATAAAAAATTAAATAGGATT
ACTGAAGGCGTTTATGACCAAAAACACCTTCAATAATCTCCTCTCTTTTTTTTTGTA
Found at i:12675057 original size:9 final size:9
Alignment explanation
Indices: 12675043--12675069 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
12675033 AACCGTTAAC
12675043 TAACCAATT
1 TAACCAATT
12675052 TAACCAATT
1 TAACCAATT
12675061 TAACCAATT
1 TAACCAATT
12675070 GAATCAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (9 bp):
TAACCAATT
Found at i:12675077 original size:18 final size:18
Alignment explanation
Indices: 12675043--12675078 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12675033 AACCGTTAAC
*
12675043 TAACCAATTTAACCAATT
1 TAACCAATTGAACCAATT
*
12675061 TAACCAATTGAATCAATT
1 TAACCAATTGAACCAATT
12675079 CAAAAATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.03, T:0.33
Consensus pattern (18 bp):
TAACCAATTGAACCAATT
Found at i:12678265 original size:22 final size:22
Alignment explanation
Indices: 12678233--12678298 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
12678223 AAAGAATCTC
*
12678233 AAATAATATATTAATAATTAAT
1 AAATAAAATATTAATAATTAAT
* *
12678255 ACATAAAATATTAGAT-ATTAGT
1 AAATAAAATATTA-ATAATTAAT
12678277 AAATTAAAAATCATTAATAATT
1 AAA-T-AAAAT-ATTAATAATT
12678299 TTTTATCGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
22 18 0.51
23 3 0.09
24 7 0.20
25 7 0.20
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (22 bp):
AAATAAAATATTAATAATTAAT
Found at i:12678621 original size:32 final size:32
Alignment explanation
Indices: 12678585--12678649 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
12678575 ATCAAATCTA
*
12678585 AAATGACTCATTTTTTCCTTGATGTAAACTTG
1 AAATGACTCACTTTTTCCTTGATGTAAACTTG
* * *
12678617 AAATGATTCACTTTTTCCTTGATTTAAATTTG
1 AAATGACTCACTTTTTCCTTGATGTAAACTTG
12678649 A
1 A
12678650 CTTGTTCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (32 bp):
AAATGACTCACTTTTTCCTTGATGTAAACTTG
Found at i:12680093 original size:72 final size:71
Alignment explanation
Indices: 12679927--12680086 Score: 189
Period size: 72 Copynumber: 2.2 Consensus size: 71
12679917 AAATTACGTA
* * * *
12679927 TTTATCTTAAAAATGTCATCTTTATTGAATTCTAAAATATATATTTTTTATATTTTCAACAAAAA
1 TTTATCTTAGAAACGTCATTTTTATTGAATTCTAAAATATATATTTTTCATATTTTCAACAAAAA
*
12679992 TTGCATT
66 ATG-ATT
* * * *
12679999 TTTATTTTAGAAACGTCATTTTTATTGAATTCTAAAA-AGTTTATTTTTCATGTTTTCAATAAAG
1 TTTATCTTAGAAACGTCATTTTTATTGAATTCTAAAATA-TATATTTTTCATATTTTCAACAAA-
12680063 ACAATG-TT
64 A-AATGATT
12680071 TTTATCTTAGAAACGT
1 TTTATCTTAGAAACGT
12680087 TGTTTTTTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
71 1 0.01
72 70 0.93
73 1 0.01
74 3 0.04
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (71 bp):
TTTATCTTAGAAACGTCATTTTTATTGAATTCTAAAATATATATTTTTCATATTTTCAACAAAAA
ATGATT
Found at i:12680111 original size:20 final size:20
Alignment explanation
Indices: 12680088--12680153 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 20
12680078 TAGAAACGTT
12680088 GTTTTTTCAACAAAAACTAC
1 GTTTTTTCAACAAAAACTAC
** *
12680108 GTTTTTATC-TTAGAAACGT-C
1 GTTTTT-TCAACAAAAAC-TAC
* *
12680128 GTCTTTTCAACAAAAACTAT
1 GTTTTTTCAACAAAAACTAC
12680148 GTTTTT
1 GTTTTT
12680154 ATCTTAGAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 8
0.66 0.18 0.16
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (20 bp):
GTTTTTTCAACAAAAACTAC
Found at i:12680112 original size:40 final size:40
Alignment explanation
Indices: 12680068--12680164 Score: 167
Period size: 40 Copynumber: 2.4 Consensus size: 40
12680058 TAAAGACAAT
* *
12680068 GTTTTTATCTTAGAAACGTTGTTTTTTCAACAAAAACTAC
1 GTTTTTATCTTAGAAACGTCGTCTTTTCAACAAAAACTAC
*
12680108 GTTTTTATCTTAGAAACGTCGTCTTTTCAACAAAAACTAT
1 GTTTTTATCTTAGAAACGTCGTCTTTTCAACAAAAACTAC
12680148 GTTTTTATCTTAGAAAC
1 GTTTTTATCTTAGAAAC
12680165 ATTGCCTTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.42
Consensus pattern (40 bp):
GTTTTTATCTTAGAAACGTCGTCTTTTCAACAAAAACTAC
Found at i:12680275 original size:73 final size:71
Alignment explanation
Indices: 12680132--12680310 Score: 218
Period size: 74 Copynumber: 2.5 Consensus size: 71
12680122 AACGTCGTCT
* *
12680132 TTTCAACAAAAACTATG-TTTTTATCTTAGAAACATTGCCTTTATTGAATTATGAAAACTATATT
1 TTTCAACAAAAA-T-TGATTTTTATTTTAGAAACATTACCTTTATTGAATTATGAAAACTATATT
12680196 TTTTCATAC
64 TTTTCAT-C
* *
12680205 TTTCAACAAAAATTGCATTTTCTATTTTAGAAACATTATCTTTATTGAATTCTGAAAA-TATATT
1 TTTCAACAAAAATTG-ATTTT-TATTTTAGAAACATTACCTTTATTGAATTATGAAAACTATATT
*
12680269 TTTTCATG
64 TTTTCATC
* * *
12680277 TTTCAACAAAGATTGAATTCTTAGTTTAGAAACA
1 TTTCAACAAAAATTG-ATTTTTATTTTAGAAACA
12680311 CCATATTTTA
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
71 14 0.15
72 19 0.20
73 29 0.31
74 32 0.34
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (71 bp):
TTTCAACAAAAATTGATTTTTATTTTAGAAACATTACCTTTATTGAATTATGAAAACTATATTTT
TTCATC
Found at i:12691881 original size:73 final size:75
Alignment explanation
Indices: 12691740--12691899 Score: 209
Period size: 73 Copynumber: 2.2 Consensus size: 75
12691730 CCCTATGTGG
* * * * * * *
12691740 GGGGATCGATCCCTTTTCTGGATTTTTAGACTTGGGGGGCATTCTGTTTGAGCAATCGATCGATC
1 GGGGATCGATCCATTTTCTGGAGTTTCAGACTTGGGAGGCATTCTCTTTAAGCAATCAATCGATC
12691805 CCTTTTAAGA
66 CCTTTTAAGA
* *
12691815 GGGGATCGATCCATTTTTTGG-GTTTCAGACTT-GGAGGCATTCTCTTTAAGCAA-CTAATGGAT
1 GGGGATCGATCCATTTTCTGGAGTTTCAGACTTGGGAGGCATTCTCTTTAAGCAATC-AATCGAT
12691877 CCCTTTTAAGA
65 CCCTTTTAAGA
12691888 GGGGATCGATCC
1 GGGGATCGATCC
12691900 CTTATGTGGG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
72 1 0.01
73 46 0.61
74 9 0.12
75 19 0.25
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (75 bp):
GGGGATCGATCCATTTTCTGGAGTTTCAGACTTGGGAGGCATTCTCTTTAAGCAATCAATCGATC
CCTTTTAAGA
Found at i:12693466 original size:16 final size:16
Alignment explanation
Indices: 12693445--12693479 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
12693435 ATACAAGCTC
*
12693445 ATACCAATTGTTAAGG
1 ATACCAATTGTTAAAG
12693461 ATACCAATTGTTAAAG
1 ATACCAATTGTTAAAG
12693477 ATA
1 ATA
12693480 TGTCATCAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (16 bp):
ATACCAATTGTTAAAG
Found at i:12698042 original size:20 final size:20
Alignment explanation
Indices: 12697992--12698043 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
12697982 TTTTAAGAGA
* *
12697992 GGATCAATCCCTTACCATAGG
1 GGATCAATCCCTTA-TATGGG
*
12698013 TGATCAATCCCTTATATGGG
1 GGATCAATCCCTTATATGGG
*
12698033 GGATCGATCCC
1 GGATCAATCCC
12698044 GTTTCTGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (20 bp):
GGATCAATCCCTTATATGGG
Found at i:12701841 original size:21 final size:21
Alignment explanation
Indices: 12701817--12701856 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
12701807 ATAATACCTG
*
12701817 ACTATTATTAAAGAGAAGTCA
1 ACTATTATTAAAGAAAAGTCA
12701838 ACTATTATTAAAGAAAAGT
1 ACTATTATTAAAGAAAAGT
12701857 TGATTACCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.30
Consensus pattern (21 bp):
ACTATTATTAAAGAAAAGTCA
Found at i:12705969 original size:35 final size:35
Alignment explanation
Indices: 12705930--12706001 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 35
12705920 TCTTATTTTT
*
12705930 AAGTTTCCAAATTTTGTAAATTCAGAAA-TATTTAA
1 AAGTTTCC-AATATTGTAAATTCAGAAAGTATTTAA
* * * *
12705965 AAGTTTTCAATATTGTAGATTCGGAAAGTTTTTAA
1 AAGTTTCCAATATTGTAAATTCAGAAAGTATTTAA
12706000 AA
1 AA
12706002 ACTGTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 16 0.52
35 15 0.48
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (35 bp):
AAGTTTCCAATATTGTAAATTCAGAAAGTATTTAA
Found at i:12706213 original size:20 final size:20
Alignment explanation
Indices: 12706190--12706231 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
12706180 ATAATATTGT
12706190 GAAAGTTTTTCACAATGTAA
1 GAAAGTTTTTCACAATGTAA
*
12706210 GAAAGTTTTTTACAATGTAA
1 GAAAGTTTTTCACAATGTAA
12706230 GA
1 GA
12706232 TTTTTTCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (20 bp):
GAAAGTTTTTCACAATGTAA
Found at i:12707461 original size:21 final size:21
Alignment explanation
Indices: 12707399--12707461 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
12707389 AACGATGTTA
* *
12707399 ATAAAATTAATTATTATAATG
1 ATAAAATTAAATATTATAATT
*
12707420 ATGAAATTAAATATTATAATT
1 ATAAAATTAAATATTATAATT
12707441 ATAAAATTAAA-ATATATAATT
1 ATAAAATTAAATAT-TATAATT
12707462 TCATTTGCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
20 2 0.05
21 35 0.95
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (21 bp):
ATAAAATTAAATATTATAATT
Found at i:12707568 original size:32 final size:29
Alignment explanation
Indices: 12707532--12707607 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 29
12707522 GACTATTAAA
12707532 AATATTATAGTAAGATATGT-ATATAATAATTT
1 AATATTATAGTAA-A-AT-TAATA-AATAATTT
12707564 AATATT-T-GTAAAATTAATAAATAATTT
1 AATATTATAGTAAAATTAATAAATAATTT
* *
12707591 AAAATTATA-AAAAATTA
1 AATATTATAGTAAAATTA
12707608 GTGGACAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
28 13 0.33
29 1 0.03
30 4 0.10
31 1 0.03
32 6 0.15
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (29 bp):
AATATTATAGTAAAATTAATAAATAATTT
Found at i:12707606 original size:17 final size:18
Alignment explanation
Indices: 12707572--12707606 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
12707562 TTAATATTTG
*
12707572 TAAAATTAATAAATAATT
1 TAAAATTAATAAAAAATT
12707590 TAAAATT-ATAAAAAATT
1 TAAAATTAATAAAAAATT
12707607 AGTGGACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAATTAATAAAAAATT
Found at i:12708005 original size:20 final size:20
Alignment explanation
Indices: 12707980--12708020 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
12707970 AACAAATGGA
12707980 ATGGTGAAAACTAAAAAATC
1 ATGGTGAAAACTAAAAAATC
12708000 ATGGTGAAAACTAAAAAATC
1 ATGGTGAAAACTAAAAAATC
12708020 A
1 A
12708021 ATCTCATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (20 bp):
ATGGTGAAAACTAAAAAATC
Found at i:12715553 original size:15 final size:15
Alignment explanation
Indices: 12715533--12715562 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12715523 AAGCACGTAT
*
12715533 GAGCTTTAAAACAAA
1 GAGCTTAAAAACAAA
12715548 GAGCTTAAAAACAAA
1 GAGCTTAAAAACAAA
12715563 ATGCAAGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.13, T:0.17
Consensus pattern (15 bp):
GAGCTTAAAAACAAA
Found at i:12716034 original size:12 final size:12
Alignment explanation
Indices: 12716019--12716044 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12716009 GAGATAAAGT
12716019 GAGAAAAAAAAA
1 GAGAAAAAAAAA
12716031 GAGAAAAAAAAA
1 GAGAAAAAAAAA
12716043 GA
1 GA
12716045 ATTGGCCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
GAGAAAAAAAAA
Found at i:12729146 original size:123 final size:123
Alignment explanation
Indices: 12729005--12729234 Score: 277
Period size: 124 Copynumber: 1.9 Consensus size: 123
12728995 GCGTTTTTAA
** * ** * * * ***
12729005 CCAAAAATGCCTTCAATAATCTCCTCCCATTTTT-T-TTGCAATTATTGAATGTATTTTTGGGAA
1 CCAAAAACACCTTCAATAATCTCCTCCAATTTTTATGAGGCAATTATTCAAGGCA-TTTTCCCAA
12729068 AAAAATGCCTTGAATAATTCC-TTATAAAAAATTGAATCGGGTTAGTGAAGTCGTTTATGG
65 AAAAATGCCTTGAATAA-TCCATTATAAAAAATTGAAT-GGGTTAGTGAAGTCGTTTATGG
* * *
12729128 CCAAAAACACCTTGAATAATCTCCTTCAATTTTTATGAGGGAATTATTCAAGGCATTTTCCCAAA
1 CCAAAAACACCTTCAATAATCTCCTCCAATTTTTATGAGGCAATTATTCAAGGCATTTTCCCAAA
*
12729193 AAAATGCCTTGAATAATCCATTGTAAAAAATTGAATGGGTTA
66 AAAATGCCTTGAATAATCCATTATAAAAAATTGAATGGGTTA
12729235 TTAAAGACGT
Statistics
Matches: 89, Mismatches: 15, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
123 38 0.43
124 39 0.44
125 12 0.13
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (123 bp):
CCAAAAACACCTTCAATAATCTCCTCCAATTTTTATGAGGCAATTATTCAAGGCATTTTCCCAAA
AAAATGCCTTGAATAATCCATTATAAAAAATTGAATGGGTTAGTGAAGTCGTTTATGG
Found at i:12729302 original size:123 final size:124
Alignment explanation
Indices: 12729066--12729308 Score: 271
Period size: 123 Copynumber: 2.0 Consensus size: 124
12729056 TATTTTTGGG
* * * *
12729066 AAAAAAATGCCTTGAATAATTCCTTATAAAAAATTGAATCGGGTTAGTGAAGTCGTTTATGGCCA
1 AAAAAAATGCCTTGAATAATTCCTTATAAAAAATTGAATCGGGTTAGTAAAGACGTTTATAGCAA
* * **** *
12729131 AAAACACCTTGAATAATCTCCTTCAATTTTTATGAGGGAATTATTCAAGGCATTTTCCC
66 AAAACACATTGAATAATCTCATTCAAAAAATATGAGGGAATTACTCAAGGCATTTTCCC
* * *
12729190 AAAAAAATGCCTTGAATAA-TCCATTGTAAAAAATTGAAT-GGGTTATTAAAGACGTTTCTAGCA
1 AAAAAAATGCCTTGAATAATTCC-TTATAAAAAATTGAATCGGGTTAGTAAAGACGTTTATAGCA
**
12729253 AAAAATGCATTGAATAATCT-ATTACAAAAAAT-TGAATGGG-ATTACTCAAGGCATTT
65 AAAAACACATTGAATAATCTCATT-CAAAAAATATG-A-GGGAATTACTCAAGGCATTT
12729309 CTAGCCAAAA
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
122 4 0.04
123 58 0.59
124 37 0.37
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.32
Consensus pattern (124 bp):
AAAAAAATGCCTTGAATAATTCCTTATAAAAAATTGAATCGGGTTAGTAAAGACGTTTATAGCAA
AAAACACATTGAATAATCTCATTCAAAAAATATGAGGGAATTACTCAAGGCATTTTCCC
Found at i:12729320 original size:61 final size:61
Alignment explanation
Indices: 12729191--12729318 Score: 166
Period size: 61 Copynumber: 2.1 Consensus size: 61
12729181 CATTTTCCCA
* ** * *
12729191 AAAAAATGCCTTGAATAATCCATTGTAAAAAATTGAATGGGTTATTAAAGACGTTTCTAGC
1 AAAAAATGCATTGAATAATCCATTACAAAAAATTGAATGGGTTACTAAAGACATTTCTAGC
* * *
12729252 AAAAAATGCATTGAATAATCTATTACAAAAAATTGAATGGGATTACTCAAGGCATTTCTAGC
1 AAAAAATGCATTGAATAATCCATTACAAAAAATTGAATGGG-TTACTAAAGACATTTCTAGC
*
12729314 CAAAA
1 AAAAA
12729319 TGTAAATTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
61 37 0.65
62 20 0.35
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (61 bp):
AAAAAATGCATTGAATAATCCATTACAAAAAATTGAATGGGTTACTAAAGACATTTCTAGC
Found at i:12732383 original size:22 final size:22
Alignment explanation
Indices: 12732351--12732408 Score: 107
Period size: 22 Copynumber: 2.6 Consensus size: 22
12732341 GCAAAATGAT
*
12732351 TTGAATGATTTGAATGAAAAAC
1 TTGAATAATTTGAATGAAAAAC
12732373 TTGAATAATTTGAATGAAAAAC
1 TTGAATAATTTGAATGAAAAAC
12732395 TTGAATAATTTGAA
1 TTGAATAATTTGAA
12732409 ATGGAAATGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (22 bp):
TTGAATAATTTGAATGAAAAAC
Found at i:12732514 original size:31 final size:32
Alignment explanation
Indices: 12732479--12732546 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
12732469 TGAAGTCGAA
* * *
12732479 TTGATCGAATC-TAAAATGACTCATTTTTTCT
1 TTGATCGAAACTTAAAATGACTCAATTTTTCC
* *
12732510 TTGATCTAAACTTGAAATGACTCAATTTTTCC
1 TTGATCGAAACTTAAAATGACTCAATTTTTCC
12732542 TTGAT
1 TTGAT
12732547 TCAAATTTGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
31 9 0.29
32 22 0.71
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.44
Consensus pattern (32 bp):
TTGATCGAAACTTAAAATGACTCAATTTTTCC
Found at i:12733152 original size:72 final size:73
Alignment explanation
Indices: 12733029--12733185 Score: 235
Period size: 72 Copynumber: 2.2 Consensus size: 73
12733019 CTTAGAAAAG
* *
12733029 TCATCTTTTCAACAAAAAATTATGTATTTATCTTAAAAATGTCATTTTTATTGAATTCTAAAAAA
1 TCATATTTTCAACAAAAAATTACGTATTTATCTTAAAAATGTCATTTTTATTGAATTCTAAAAAA
12733094 TATATTTT
66 TATATTTT
* * * * *
12733102 TTATATTTTCAAC-AAAAATTACGTTTTTATTTTAGAAATGTCATTTTTATTGAATTCTAAAAAG
1 TCATATTTTCAACAAAAAATTACGTATTTATCTTAAAAATGTCATTTTTATTGAATTCTAAAAAA
12733166 TATATTTT
66 TATATTTT
*
12733174 TCATGTTTTCAA
1 TCATATTTTCAA
12733186 TAAAGACAAC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
72 64 0.85
73 11 0.15
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.48
Consensus pattern (73 bp):
TCATATTTTCAACAAAAAATTACGTATTTATCTTAAAAATGTCATTTTTATTGAATTCTAAAAAA
TATATTTT
Found at i:12733206 original size:72 final size:72
Alignment explanation
Indices: 12733065--12733211 Score: 213
Period size: 72 Copynumber: 2.0 Consensus size: 72
12733055 TTTATCTTAA
* ** * *
12733065 AAATGTCATTTTTATTGAATTCTAAAAAATATATTTTTTATATTTTCAACAAAAATTACGTTTTT
1 AAATGTCATTTTTATTGAATTCTAAAAAATATATTTTTCATATTTTCAACAAAAACAACATTTTA
12733130 ATTTTAG
66 ATTTTAG
* * * *
12733137 AAATGTCATTTTTATTGAATTCTAAAAAGTATATTTTTCATGTTTTCAATAAAGACAACATTTTA
1 AAATGTCATTTTTATTGAATTCTAAAAAATATATTTTTCATATTTTCAACAAAAACAACATTTTA
12733202 ATTTTAG
66 ATTTTAG
12733209 AAA
1 AAA
12733212 CATTGTTTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.47
Consensus pattern (72 bp):
AAATGTCATTTTTATTGAATTCTAAAAAATATATTTTTCATATTTTCAACAAAAACAACATTTTA
ATTTTAG
Found at i:12733249 original size:40 final size:40
Alignment explanation
Indices: 12733205--12733301 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
12733195 CATTTTAATT
*
12733205 TTAGAAACATTGTTTTTTCAACAAAAACTACGTTTTTATC
1 TTAGAAACATTGTCTTTTCAACAAAAACTACGTTTTTATC
* ** *
12733245 TTAGAAACGTCATCTTTTCAACAAAAACTATGTTTTTATC
1 TTAGAAACATTGTCTTTTCAACAAAAACTACGTTTTTATC
*
12733285 TTAGAAACATTGCCTTT
1 TTAGAAACATTGTCTTT
12733302 ATTGAATTAT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.41
Consensus pattern (40 bp):
TTAGAAACATTGTCTTTTCAACAAAAACTACGTTTTTATC
Found at i:12733382 original size:75 final size:71
Alignment explanation
Indices: 12733277--12733440 Score: 193
Period size: 75 Copynumber: 2.2 Consensus size: 71
12733267 AAAAACTATG
* *
12733277 TTTTTATCTTAGAAACATTGCCTTTATTGAATTATGAAAACTATATTTTTTTCATACTTTCAACA
1 TTTTTATTTTAGAAACATTACCTTTATTGAATTATGAAAA-TATA-TTTTTTCAT-CTTTCAACA
* *
12733342 AATATTGCA
63 AAGATTGAA
* * * * *
12733351 TTTTCTATTTTAGAAACATTATCTTTGTTGAATTCTGAAAATATATTTTTTCATGTTTTAACAAA
1 TTTT-TATTTTAGAAACATTACCTTTATTGAATTATGAAAATATATTTTTTCATCTTTCAACAAA
12733416 GATTGAA
65 GATTGAA
*
12733423 TTATTTGTTTTAGAAACA
1 TT-TTTATTTTAGAAACA
12733441 CCATATTTTA
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
72 28 0.36
73 11 0.14
74 8 0.10
75 31 0.40
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.48
Consensus pattern (71 bp):
TTTTTATTTTAGAAACATTACCTTTATTGAATTATGAAAATATATTTTTTCATCTTTCAACAAAG
ATTGAA
Found at i:12747323 original size:26 final size:26
Alignment explanation
Indices: 12747269--12747323 Score: 60
Period size: 26 Copynumber: 2.1 Consensus size: 26
12747259 TTTATTCTTT
**
12747269 TTTTTCTCTTCTTTCTCTACTATCTC
1 TTTTTCTCTTCTTTCTCTACTAAATC
12747295 TTTTTCT-TTCATTTCTCT-CTAAATAC
1 TTTTTCTCTTC-TTTCTCTACTAAAT-C
12747321 TTT
1 TTT
12747324 CCTTACAGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.13, C:0.25, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTTCTCTTCTTTCTCTACTAAATC
Found at i:12748850 original size:21 final size:21
Alignment explanation
Indices: 12748826--12748865 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
12748816 ATAATACTTG
*
12748826 ACTATTATTAAAGAGAAGTCA
1 ACTATTATTAAAGAAAAGTCA
12748847 ACTATTATTAAAGAAAAGT
1 ACTATTATTAAAGAAAAGT
12748866 TGATTGCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.12, T:0.30
Consensus pattern (21 bp):
ACTATTATTAAAGAAAAGTCA
Found at i:12752967 original size:34 final size:35
Alignment explanation
Indices: 12752929--12752999 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 35
12752919 TCTTATTTTT
12752929 AAGTTTCCAA-ATTTGTAAATTCAGAAA-TATTTAA
1 AAGTTTCCAATA-TTGTAAATTCAGAAAGTATTTAA
* * * *
12752963 AAGTTTTCAATATTGTAGATTCGGAAAGTTTTTAA
1 AAGTTTCCAATATTGTAAATTCAGAAAGTATTTAA
12752998 AA
1 AA
12753000 AATGTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 22 0.71
35 9 0.29
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (35 bp):
AAGTTTCCAATATTGTAAATTCAGAAAGTATTTAA
Found at i:12753218 original size:21 final size:20
Alignment explanation
Indices: 12753189--12753230 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
12753179 ATAATATTGT
12753189 GAAAGTTTTTTACAATGTAA
1 GAAAGTTTTTTACAATGTAA
12753209 GAAAGTTTTTTACAATGTAA
1 GAAAGTTTTTTACAATGTAA
12753229 GA
1 GA
12753231 TTTTTTCTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.38
Consensus pattern (20 bp):
GAAAGTTTTTTACAATGTAA
Found at i:12754968 original size:20 final size:20
Alignment explanation
Indices: 12754943--12754983 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
12754933 AACAAATGGA
12754943 ATGGTGAAAACTAAAAAATC
1 ATGGTGAAAACTAAAAAATC
12754963 ATGGTGAAAACTAAAAAATC
1 ATGGTGAAAACTAAAAAATC
12754983 A
1 A
12754984 ATCTCATATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (20 bp):
ATGGTGAAAACTAAAAAATC
Found at i:12756770 original size:14 final size:15
Alignment explanation
Indices: 12756748--12756789 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
12756738 TATATATATG
12756748 TATATACATATAACA-
1 TATA-ACATATAACAT
*
12756763 TATAACATATATCAT
1 TATAACATATAACAT
12756778 TATAACTATATA
1 TATAAC-ATATA
12756790 TATATGTGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 9 0.38
15 10 0.42
16 5 0.21
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAACATATAACAT
Found at i:12758483 original size:125 final size:123
Alignment explanation
Indices: 12758245--12758674 Score: 431
Period size: 122 Copynumber: 3.5 Consensus size: 123
12758235 AATTGAAAAA
* * *
12758245 AATTATTCAAGGCTTTTTTGACCAGAAATGCCTTAAATAACTCCATTCAAATTTTTGTAAGGGAT
1 AATTATTCAAGGCATTTTTGGCCAGAAATGCCTT-AATAACCCCATTCAAATTTTTGTAAGGGAT
* * * * *
12758310 TATTCAAGGTATTTTTTTGCCAAAAAATGCCTTGAATAATCTCTAAAAAAAATTTG-AGAGG
65 TATTCAAGGTGTTTTCTAGCC-AAAAATGCCTTGAATAATCCCTAAAAAAAA-TGGAAG-GG
* * * * *
12758371 -ATTATTGAAGGCATTTTTGGCTAAAAACGCCTTACATAACCCCATTTAAATTTTTGTAAGGGAT
1 AATTATTCAAGGCATTTTTGGCCAGAAATGCCTTA-ATAACCCCATTCAAATTTTTGTAAGGGAT
* * * *
12758435 TATTCAAGTTGTTTTCTGGCCAAAAACGCCCTGAATAATCCCT-AAAAAAATGGAAGGG
65 TATTCAAGGTGTTTTCTAGCCAAAAATGCCTTGAATAATCCCTAAAAAAAATGGAAGGG
*** * * * *
12758493 AATTATTCAAGGTGGTTTTGGCCAGAAATACCTTGAATAACCTCATTCAATTTTTTGTAAAGGAT
1 AATTATTCAAGGCATTTTTGGCCAGAAATGCCTT-AATAACCCCATTCAAATTTTTGTAAGGGAT
* * *
12758558 TATTCAAGGTG-TTTCTAGCCAAAAATACCTTGAATAATCCC--CAAAAAATGGAAAGG
65 TATTCAAGGTGTTTTCTAGCCAAAAATGCCTTGAATAATCCCTAAAAAAAATGGAAGGG
* * ** * * * *
12758614 AGATTATTTAAGGTATTTTTTACTAGAAACGCCTTGAATAAACCCATTCAATTTTTTGTAA
1 A-ATTATTCAAGGCATTTTTGGCCAGAAATGCCTT-AATAACCCCATTCAAATTTTTGTAA
12758675 AGACCAAAAA
Statistics
Matches: 254, Mismatches: 45, Indels: 14
0.81 0.14 0.04
Matches are distributed among these distances:
121 14 0.06
122 79 0.31
123 69 0.27
124 21 0.08
125 71 0.28
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (123 bp):
AATTATTCAAGGCATTTTTGGCCAGAAATGCCTTAATAACCCCATTCAAATTTTTGTAAGGGATT
ATTCAAGGTGTTTTCTAGCCAAAAATGCCTTGAATAATCCCTAAAAAAAATGGAAGGG
Found at i:12758530 original size:60 final size:60
Alignment explanation
Indices: 12758431--12758614 Score: 160
Period size: 62 Copynumber: 3.0 Consensus size: 60
12758421 TTTTTGTAAG
* * ** * *
12758431 GGATTATTCAAGTTGTTTTCTGGCCAAAAACGCCCTGAATAATCCCTAAAAAAATGGAAG
1 GGATTATTCAAGGTGGTTTCTGGCCAAAAATACCTTGAATAATCCCTAAAAAAATGGAAA
* ***** *
12758491 GGAATTATTCAAGGTGGTTT-TGGCCAGAAATACCTTGAATAA-CCTCATTCAATTTTTTGTAAA
1 GG-ATTATTCAAGGTGGTTTCTGGCCAAAAATACCTTGAATAATCC-C--T-AAAAAAATGGAAA
* *
12758554 GGATTATTCAAGGT-GTTTCTAGCCAAAAATACCTTGAATAATCCC-CAAAAAATGGAAA
1 GGATTATTCAAGGTGGTTTCTGGCCAAAAATACCTTGAATAATCCCTAAAAAAATGGAAA
12758612 GGA
1 GGA
12758615 GATTATTTAA
Statistics
Matches: 95, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
58 9 0.09
59 2 0.02
60 21 0.22
61 19 0.20
62 34 0.36
63 10 0.11
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (60 bp):
GGATTATTCAAGGTGGTTTCTGGCCAAAAATACCTTGAATAATCCCTAAAAAAATGGAAA
Found at i:12759285 original size:53 final size:56
Alignment explanation
Indices: 12759180--12759290 Score: 165
Period size: 53 Copynumber: 2.0 Consensus size: 56
12759170 AATTTTTTGT
12759180 AAGAGATTATTCAAGGTGTTTTTCTAGCCAAAAACGCTTTGAATAATCTAAAAAAA
1 AAGAGATTATTCAAGGTGTTTTTCTAGCCAAAAACGCTTTGAATAATCTAAAAAAA
* * * *
12759236 AAGA-ATTATTCAAGGTG-TTTT-TGGCTAGAAATGCTTTGAATAATCTAAAAAAA
1 AAGAGATTATTCAAGGTGTTTTTCTAGCCAAAAACGCTTTGAATAATCTAAAAAAA
12759289 AA
1 AA
12759291 TTAAATGGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
53 30 0.59
54 4 0.08
55 13 0.25
56 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (56 bp):
AAGAGATTATTCAAGGTGTTTTTCTAGCCAAAAACGCTTTGAATAATCTAAAAAAA
Found at i:12760442 original size:33 final size:34
Alignment explanation
Indices: 12760401--12760486 Score: 97
Period size: 33 Copynumber: 2.6 Consensus size: 34
12760391 GTAGCAATGC
12760401 TTTCTACTATAAATGTCACTAAATTTAATGA-GT
1 TTTCTACTATAAATGTCACTAAATTTAATGATGT
* ** *
12760434 TTTCTACTATAAGTGTCGTTAAATTTAGTGATGT
1 TTTCTACTATAAATGTCACTAAATTTAATGATGT
* *
12760468 TTTATA--ATAAAAGTCACTA
1 TTTCTACTATAAATGTCACTA
12760487 TTTTCCCCGA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
32 9 0.21
33 27 0.63
34 7 0.16
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (34 bp):
TTTCTACTATAAATGTCACTAAATTTAATGATGT
Found at i:12761028 original size:19 final size:20
Alignment explanation
Indices: 12760996--12761033 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
12760986 TCTATAATAA
12760996 TTTTTTACAATATT-TTTTC
1 TTTTTTACAATATTATTTTC
**
12761015 TTTTTTACTTTATTATTTT
1 TTTTTTACAATATTATTTT
12761034 TTTAATGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTACAATATTATTTTC
Found at i:12762091 original size:14 final size:13
Alignment explanation
Indices: 12762060--12762090 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
12762050 TTTGAGTAGC
12762060 AAAAATTGATAGA
1 AAAAATTGATAGA
*
12762073 AAAAATTGTTAGA
1 AAAAATTGATAGA
12762086 AAAAA
1 AAAAA
12762091 AGATCAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.23
Consensus pattern (13 bp):
AAAAATTGATAGA
Found at i:12762506 original size:98 final size:98
Alignment explanation
Indices: 12762392--12762574 Score: 285
Period size: 98 Copynumber: 1.9 Consensus size: 98
12762382 ATAGAAATGC
* * * *
12762392 CTTAACTAATCATTTTATTTTTTTATGTTATGAATCATTTAGTAAATATCCTTTAATTTATAAAA
1 CTTAAATAATCATTTTATTTATTTATATTATGAATCATTTAATAAATATCCTTTAATTTATAAAA
* *
12762457 GGATTATTTAAGGCATTTTTATAAAAAAAACAA
66 AGATTATTTAAGACATTTTTATAAAAAAAACAA
* * *
12762490 CTTAAATAATCCTTTTATTTATTTATATTATGGATCATTTAATAATTATCCTTTAATTTATAAAA
1 CTTAAATAATCATTTTATTTATTTATATTATGAATCATTTAATAAATATCCTTTAATTTATAAAA
12762555 AGATTATTTAAGACATTTTT
66 AGATTATTTAAGACATTTTT
12762575 GTCTTTTTAT
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 76 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.48
Consensus pattern (98 bp):
CTTAAATAATCATTTTATTTATTTATATTATGAATCATTTAATAAATATCCTTTAATTTATAAAA
AGATTATTTAAGACATTTTTATAAAAAAAACAA
Found at i:12765327 original size:20 final size:19
Alignment explanation
Indices: 12765302--12765340 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
12765292 ACATCTAATG
12765302 TCATGCCTAGTATTTGTATA
1 TCATGCCTAGTATTT-TATA
*
12765322 TCATGCCTATTATTTTATA
1 TCATGCCTAGTATTTTATA
12765341 GGCATCATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (19 bp):
TCATGCCTAGTATTTTATA
Found at i:12778796 original size:30 final size:31
Alignment explanation
Indices: 12778742--12778799 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
12778732 ATATATAAAA
12778742 TTTTGAGATAATTTAATCTTTGATCCCTAGG
1 TTTTGAGATAATTTAATCTTTGATCCCTAGG
12778773 TTTTGAGATAATTCT-AT-TTTGATCCCT
1 TTTTGAGATAATT-TAATCTTTGATCCCT
12778800 TATCTATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 10 0.38
31 15 0.58
32 1 0.04
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.48
Consensus pattern (31 bp):
TTTTGAGATAATTTAATCTTTGATCCCTAGG
Found at i:12780533 original size:161 final size:162
Alignment explanation
Indices: 12780265--12780997 Score: 833
Period size: 161 Copynumber: 4.6 Consensus size: 162
12780255 TATGTTTACA
* * * ** * *
12780265 ACTTTTTATGCCATTAAAAGGTAAAAATGCAAATTTACAATTATTGTTCTATTTTAATAGTTTTG
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATGCAAATTTACTGTTATTGTTCTATTTTAACAGTTTGG
* * * ** * *
12780330 ATAGTTTCAATACATGATATTAAATTTATCCAAATTATTGAACTTAGTTTTCACGGTTGATATGT
66 ATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTGAACTTAGTTTTCACAGTTGATATGT
* * * *
12780395 ATAAAAAAATTATTGTTTACGTCTAG-TTAGG
131 GTGAAAAAGTTAATGTTTACGTCTAGTTTAGG
* * * * **
12780426 ACTTTTTGTGTCGTTAATAGGTAAAAATACAAATTTTTTGTTATTGTTCTATTTTAACAGTTTGG
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATGCAAATTTACTGTTATTGTTCTATTTTAACAGTTTGG
* *
12780491 ATAGCTCCAATACATGATATTAAACTTGTCTGAATGATTGAACTTGGTTTTCACAGTTGATATGT
66 ATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTGAACTTAGTTTTCACAGTTGATATGT
* * *
12780556 GTGAAAAAGTTAACGTTTAAGTCTA-TTTAAG
131 GTGAAAAAGTTAATGTTTACGTCTAGTTTAGG
** * * * *
12780587 ACTTTTTGTGCTATTAAGAGGCAAAAATGCAAATTTATTGTTATTGTTCTATTTTAACAATTTGC
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATGCAAATTTACTGTTATTGTTCTATTTTAACAGTTTGG
* *
12780652 ATAGTTTCAATACATGATATTAAACTTGT-TGAAATAATTGAACTTAGTTTTCACAGTTGATATG
66 ATAGCTTCAATACATGATATTAAACTTGTCTG-AATGATTGAACTTAGTTTTCACAGTTGATATG
* * * * *
12780716 TGTGAAATAGCTAATGTTTATGTAT-GTTTAGA
130 TGTGAAAAAGTTAATGTTTACGTCTAGTTTAGG
* * *
12780748 AC-TTTTATGCCGTTAAAAGGC-AAAATGCAAATTTGA-TATTATTGTTCTATTTTAACAGTCTG
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATGCAAATTT-ACTGTTATTGTTCTATTTTAACAGTTTG
* * * *
12780810 GATAGCTTCAATACATGATATTAAACTTTTTTGAATGATTGAACTTGGTTTTCACAGTTGATATA
65 GATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTGAACTTAGTTTTCACAGTTGATATG
* *
12780875 TGTGAAAAAGTT-A--TTTACCT-TTGTTTAGG
130 TGTGAAAAAGTTAATGTTTACGTCTAGTTTAGG
* * * * * *
12780904 ACATTTTT-TGCCGTTAGAAGGCAAAAATACAAAGTTGCTGCTATTGTTCTGTTTTAACAGTTTG
1 AC-TTTTTGTGCCGTTAAAAGGCAAAAATGCAAATTTACTGTTATTGTTCTATTTTAACAGTTTG
*
12780968 GATAGCTTTAATACATGATATTAAACTTGT
65 GATAGCTTCAATACATGATATTAAACTTGT
12780998 TCAAATGATT
Statistics
Matches: 487, Mismatches: 75, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
155 1 0.00
156 13 0.03
157 13 0.03
158 66 0.14
159 102 0.21
160 20 0.04
161 272 0.56
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (162 bp):
ACTTTTTGTGCCGTTAAAAGGCAAAAATGCAAATTTACTGTTATTGTTCTATTTTAACAGTTTGG
ATAGCTTCAATACATGATATTAAACTTGTCTGAATGATTGAACTTAGTTTTCACAGTTGATATGT
GTGAAAAAGTTAATGTTTACGTCTAGTTTAGG
Found at i:12788231 original size:11 final size:11
Alignment explanation
Indices: 12788217--12788241 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12788207 TTATTCTCTT
12788217 ATTATATGTTG
1 ATTATATGTTG
12788228 ATTATATGTTG
1 ATTATATGTTG
12788239 ATT
1 ATT
12788242 GTAGGACAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (11 bp):
ATTATATGTTG
Found at i:12788854 original size:131 final size:131
Alignment explanation
Indices: 12788620--12788880 Score: 479
Period size: 131 Copynumber: 2.0 Consensus size: 131
12788610 CAGATTTCTT
*
12788620 TATAATCTACAAAAGGTTCACTGGGAAGCAATGAAATGGATTTTCAGATATTTGATGTGCATGTT
1 TATAATCTACAAAAGGTTCACTGGGAAGCAATGAAATAGATTTTCAGATATTTGATGTGCATGTT
12788685 AAAAATATGCTTGAGTTATGGGATTTCACAACCAATTCTAGAAGGGTTTACTAATGCTGACATGA
66 AAAAATATGCTTGAGTTATGGGATTTCACAACCAATTCTAGAAGGGTTTACTAATGCTGACATGA
12788750 C
131 C
* *
12788751 TATAATCTACAAAAGGTTCATTGGGAAGCAGTGAAATAGATTTTCAGATATTTGATGTGCACT-T
1 TATAATCTACAAAAGGTTCACTGGGAAGCAATGAAATAGATTTTCAGATATTTGATGTGCA-TGT
12788815 TAAAAATATGCTTGAGTTATGGGATTTCACAACCAATTCTAGAAGGGTTTACTAATGCTGACATG
65 TAAAAATATGCTTGAGTTATGGGATTTCACAACCAATTCTAGAAGGGTTTACTAATGCTGACATG
12788880 A
130 A
12788881 TAGGTGATCT
Statistics
Matches: 126, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
131 125 0.99
132 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (131 bp):
TATAATCTACAAAAGGTTCACTGGGAAGCAATGAAATAGATTTTCAGATATTTGATGTGCATGTT
AAAAATATGCTTGAGTTATGGGATTTCACAACCAATTCTAGAAGGGTTTACTAATGCTGACATGA
C
Found at i:12791552 original size:61 final size:61
Alignment explanation
Indices: 12791487--12791602 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
12791477 AAATTAAAAA
* * *
12791487 TATTTTTTCT-TTTTTGAATTTTTAAATTCTCCACCATTTGGGCCTATTTAGAAATTCTTTT
1 TATTTTTT-TATTTTTGAATTTCTAAATTCTCCACCATTCGGGCCAATTTAGAAATTCTTTT
* * *
12791548 TATTTTTTTATTTTTGGATTTCTAAATTTTCCACCATTCGGGTCAATTTAGAAAT
1 TATTTTTTTATTTTTGAATTTCTAAATTCTCCACCATTCGGGCCAATTTAGAAAT
12791603 ATTTTCTTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 1 0.02
61 47 0.98
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.53
Consensus pattern (61 bp):
TATTTTTTTATTTTTGAATTTCTAAATTCTCCACCATTCGGGCCAATTTAGAAATTCTTTT
Found at i:12792058 original size:11 final size:11
Alignment explanation
Indices: 12792038--12792075 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
12792028 TATTCTCAAA
12792038 TTTTATTTTATT
1 TTTTA-TTTATT
12792050 TTTTATTTATT
1 TTTTATTTATT
12792061 TTATT-TTTATT
1 TT-TTATTTATT
12792072 TTTT
1 TTTT
12792076 TCAATTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.08
11 16 0.64
12 7 0.28
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:12792060 original size:16 final size:15
Alignment explanation
Indices: 12792039--12792076 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
12792029 ATTCTCAAAT
12792039 TTTATTTTATTTTTTA
1 TTTATTTTA-TTTTTA
12792055 TTTATTTTATTTTTA
1 TTTATTTTATTTTTA
12792070 TTT-TTTT
1 TTTATTTT
12792077 CAATTTAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 4 0.18
15 9 0.41
16 9 0.41
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (15 bp):
TTTATTTTATTTTTA
Done.