Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 72 of 129
Found at i:13711137 original size:2 final size:2
Alignment explanation
Indices: 13711130--13711171 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
13711120 ATCTATCATC
*
13711130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13711172 AGTACTCATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:13711376 original size:22 final size:19
Alignment explanation
Indices: 13711345--13711396 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
13711335 TTTAATTTGT
*
13711345 TAATTAATTATTTAGTAGTAA
1 TAATTAATTATTGA-T-GTAA
13711366 TAATTTAATTA-TGATGTAA
1 TAA-TTAATTATTGATGTAA
13711385 TAATTAATTATT
1 TAATTAATTATT
13711397 CGGTTGATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
18 7 0.25
19 8 0.29
20 1 0.04
21 5 0.18
22 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (19 bp):
TAATTAATTATTGATGTAA
Found at i:13713536 original size:692 final size:699
Alignment explanation
Indices: 13712593--13714491 Score: 2240
Period size: 709 Copynumber: 2.7 Consensus size: 699
13712583 AAATTTTTCA
* * *
13712593 TTTTTACCAAAGGTTTTGGCTTTTATATATTTATATAAG----ATATG-ATTTAATTGAGAATGA
1 TTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAAATATGAATTTAATTGAGAATGA
* * *
13712653 TTTAAGGTAAATAATAATAGAAAATAAATGTAATTAATTT-GATTTTTTAAAAATAATTCAAATA
66 TTTAAGGTAAATAATAACAAAAAATAAATGTAATTAATTTAAATTTTTTAAAAATAATTCAAATA
* * * *
13712717 AAATAAAATATAGGACACGGGAGGATTTCCAAGATCATCTACATACCAATAATATAGGTCATCAA
131 AAATAAAATATAGGACACAGG-GGATTTTCAAGATCGTCTACATATCAATAATATAGG-CATCAA
* * *
13712782 CATTTGAAAATTTTCTTTTTTACCAAAGGCTTTGATTTTGATATATCTTATATAAGATAATGGTA
194 CATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTATATAAGATAATGGTA
*
13712847 ACGATATTCATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTGATCATCTTTTAATCA
259 ATGATATTCATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTGATCATCTTTTAATCA
* *
13712912 TTTAAAAATTAATATGTATACATATTAAACATATA-ATCATAGCTTGGTGAAGTATATAAATAAG
324 TTTTAAAATTAATATATATACATATTAAACATATATA-CATAGCTTGGTGAAGTATATAAATAAG
13712976 CCATAGAGTAAAAAATTGGAAAGTGAATTTTTTTTTTAACACATGTAATTTAAGAATTGAATATT
388 CCATAGAGTAAAAAATTGGAAAGTGAA-TTTTTTTTTAACACATGTAATTTAAGAATTGAATATT
* * * *
13713041 ATAATTAGAAAAAGAGAATAT-GAA-T-T-TA-ATTGA-GAGTGACTTAAAGTAAATAATA-ATA
452 ATAATTAGAAAAAGAGAACATAAAATTATCTATAATGATG-GT-AATTAAAGT-AATAATACATA
**** * * *
13713099 GAAAATAAATGTAATTAAT-TTAATTTTTTTAAAATAAT-TCAAATAT-AAT-CAATGCATTGAA
514 GAAAATAAATGTAATTAATATTAATTTAGCGAAAATAATATAAAAAATAAATGCAATGAATT-AA
* * * * ** *
13713160 ATATTTTAAAATTTATATGAAAT-TAAATAA-AATT-AAT-TAAATGAAAAATACATGTTAATTG
578 ATATTTTAAAAATAAT-TCAAATATAAATAAGAATTAAATATAAATG-AAAATAAAT-AAAATTA
* * * * * *
13713221 TTTAGATTGT-CCACATTTCA-AAATA-ATAGAC-CATA-CACCTTGGATTTTTTTTTTTCTGT
640 ATTACA-TGTAACACATGTCATAAATACATAGACACATACCACCTTAGA--TTTTTTTTCCT-T
* *
13713280 TTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAAAATATGAATTTAATTGAAAATT
1 TTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGAT-AAATATGAATTTAATTGAGAATG
13713345 ATTTAAGGTAAATAATAACAAAAAATAAATGTAATTAATTTAAATTTTTTAAAAATAATTCAAAT
65 ATTTAAGGTAAATAATAACAAAAAATAAATGTAATTAATTTAAATTTTTTAAAAATAATTCAAAT
*
13713410 AAAATAAAATATAGGACAC-GGGGATTTTCAAGACCGT-TCACATATCAATAATATAGGCCATCA
130 AAAATAAAATATAGGACACAGGGGATTTTCAAGATCGTCT-ACATATCAATAATATAGG-CATCA
13713473 ACATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTATATAAGATAATGGT
193 ACATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTATATAAGATAATGGT
* * * *
13713538 AATGATATTCA-TTTGTTTGATATATTTCAAAATTAATTTTAATTGATTTAATCATCTTTTGATA
258 AATGATATTCATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTGATCATCTTTTAATC
* *
13713602 ATTTTAAAATTAATATATATACAAATTAAACATATGTACATAGCTTGGTGAAGTATATAAATAAG
323 ATTTTAAAATTAATATATATACATATTAAACATATATACATAGCTTGGTGAAGTATATAAATAAG
* * * *
13713667 TC--AGAGTAAAAAATTGGAAAGTGAATTGTTTTTTACACAAAATATAATTTAA-AAGTTGAATA
388 CCATAGAGTAAAAAATTGGAAAGTGAATTTTTTTTTA-AC-ACATGTAATTTAAGAA-TTGAATA
* ** * * *
13713729 TTATAATTAGAAAAGGAGAACATAAAATTATCCTATAATGATGGTAATTAAAGTTTTATTACGTT
450 TTATAATTAGAAAAAGAGAACATAAAATTAT-CTATAATGATGGTAATTAAAGTAATAATACATA
* * * * * * * * *
13713794 TAATATGAATTTAATTGATATTGATTTAGCGAAAATAATAATAAAAAATAAATGTAATTAATTTA
514 GAAAATAAATGTAATTAATATTAATTTAGCGAAAATAAT-ATAAAAAATAAATGCAATGAATTAA
* * * ** *
13713859 ATTTTTTAAAAATAATTCAAATATAATTAATGCATTGAAATATTTATGAAATTAAATAAAATTAA
578 ATATTTTAAAAATAATTCAAATATAAATAA-GAATT-AAATATAAATGAAAATAAATAAAATTAA
*** * * *
13713924 TTACATGTAAAACACATGTCACTTGTTTACATCGTCTACATACCCATCTTAGATTTTTTTTCCTT
641 TTACATGT--AACACATGTCA--TAAATACATAGAC-ACATA-CCACCTTAGATTTTTTTTCCTT
*
13713989 TTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAACGTATGAATTTAATTGAGAATG
1 TTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAA-ATATGAATTTAATTGAGAATG
* * * **
13714054 ATTTAAGGTAAA-AAGTAACAAAAAATTAATGCAATTAATTTAATTTTTTTTTAAATAATTCAAA
65 ATTTAAGGTAAATAA-TAACAAAAAATAAATGTAATTAATTTAAATTTTTTAAAAATAATTCAAA
** * **
13714118 TAAAA-AAAATATAGGACACATGAAGATTTTCAAGATTGTCTACATATCAGCAATAT----A-CA
129 TAAAATAAAATATAGGACACA-GGGGATTTTCAAGATCGTCTACATATCAATAATATAGGCATCA
* *
13714177 ACATTGGAAAATTTTCTTTTTTACTAAAGGTTTTGATTTTTATATATCTTATATAAGATAATGCT
193 ACATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTATATAAGATAATGGT
* * *
13714242 AATGACATTAATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTGAGCATCTTTTAATC
258 AATGATATTCATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTGATCATCTTTTAATC
* *
13714307 ATTTTAAAATTAATATATATATACATATTAAATATATATACATAGCTTGGTGAAGTATATAAACA
323 ATTTTAAAATT-A-ATATATATACATATTAAACATATATACATAGCTTGGTGAAGTATATAAATA
* * * *
13714372 AGCCATAGAGTAAAAAATCGGAAAGTGAATATTTTTTTAACACAAATGTAATTTAGGAATTGAGT
386 AGCCATAGAGTAAAAAATTGGAAAGTGAATTTTTTTTTAACAC--ATGTAATTTAAGAATTGAAT
*
13714437 ATTACAATTAGAAAAAGAGAACATAAAATTATCCTATAATGATGGTAATTAAAGT
449 ATTATAATTAGAAAAAGAGAACATAAAATTAT-CTATAATGATGGTAATTAAAGT
13714492 TTTATTACCT
Statistics
Matches: 1040, Mismatches: 117, Indels: 88
0.84 0.09 0.07
Matches are distributed among these distances:
687 36 0.03
688 9 0.01
689 27 0.03
690 39 0.04
691 112 0.11
692 114 0.11
693 55 0.05
694 45 0.04
695 25 0.02
696 20 0.02
697 1 0.00
698 11 0.01
699 23 0.02
700 6 0.01
701 6 0.01
702 8 0.01
703 10 0.01
704 86 0.08
705 60 0.06
706 1 0.00
707 53 0.05
708 24 0.02
709 218 0.21
710 43 0.04
711 1 0.00
712 7 0.01
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.39
Consensus pattern (699 bp):
TTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAAATATGAATTTAATTGAGAATGA
TTTAAGGTAAATAATAACAAAAAATAAATGTAATTAATTTAAATTTTTTAAAAATAATTCAAATA
AAATAAAATATAGGACACAGGGGATTTTCAAGATCGTCTACATATCAATAATATAGGCATCAACA
TTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTATATAAGATAATGGTAAT
GATATTCATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTGATCATCTTTTAATCATT
TTAAAATTAATATATATACATATTAAACATATATACATAGCTTGGTGAAGTATATAAATAAGCCA
TAGAGTAAAAAATTGGAAAGTGAATTTTTTTTTAACACATGTAATTTAAGAATTGAATATTATAA
TTAGAAAAAGAGAACATAAAATTATCTATAATGATGGTAATTAAAGTAATAATACATAGAAAATA
AATGTAATTAATATTAATTTAGCGAAAATAATATAAAAAATAAATGCAATGAATTAAATATTTTA
AAAATAATTCAAATATAAATAAGAATTAAATATAAATGAAAATAAATAAAATTAATTACATGTAA
CACATGTCATAAATACATAGACACATACCACCTTAGATTTTTTTTCCTT
Found at i:13714092 original size:709 final size:700
Alignment explanation
Indices: 13713267--13714653 Score: 2062
Period size: 709 Copynumber: 2.0 Consensus size: 700
13713257 ACCTTGGATT
*
13713267 TTTTTTTTTCTGTTTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAAAATATGAAT
1 TTTTTTTTCCTGTTTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAAAATATGAAT
* *
13713332 TTAATTGAAAATTATTTAAGGTAAATAATAACAAAAAATAAATGTAATTAATTTAAATTTTTTAA
66 TTAATTGAAAATGATTTAAGGTAAATAATAACAAAAAATAAATGCAATTAATTTAAATTTTTTAA
** *
13713397 AAATAATTCAAATAAAATAAAATATAGGACAC-GGGGATTTTCAAGACCGT-TCACATATCAATA
131 AAATAATTCAAATAAAA-AAAATATAGGACACAGAAGATTTTCAAGACCGTCT-ACATATCAACA
13713460 ATATAGGCCATCAACATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTAT
194 ATAT-----A-CAACATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTAT
* * * *
13713525 ATAAGATAATGGTAATGATATTCA-TTTGTTTGATATATTTCAAAATTAATTTTAATTGATTTAA
253 ATAAGATAATGCTAATGACATTAATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTAA
* * *
13713589 TCATCTTTTGATAATTTTAAAATT-A-ATATATATACAAATTAAACATATGTACATAGCTTGGTG
318 GCATCTTTTAATAATTTTAAAATTAATATATATATACAAATTAAACATATATACATAGCTTGGTG
* * *
13713652 AAGTATATAAATAAGTC-AGAGTAAAAAATTGGAAAGTGAAT-TGTTTTTT-ACACAAAATATAA
383 AAGTATATAAACAAGCCAAGAGTAAAAAATCGGAAAGTGAATAT-TTTTTTAACAC-AAATATAA
* *
13713714 TTTA-AAAGTTGAATATTATAATTAGAAAAGGAGAACATAAAATTATCCTATAATGATGGTAATT
446 TTTAGAAA-TTGAATATTACAATTAGAAAAAGAGAACATAAAATTATCCTATAATGATGGTAATT
* * * *
13713778 AAAGTTTTATTACGTTTAATATGAATTTAATTGATATTGATTT-AGCGAAAATAATAATAAAAAA
510 AAAGTTTTATTACCTTAAATATGAATTTAATTGAGAGTGATTTAAG-GAAAATAATAAT---AAA
*
13713842 TAAATGTAATTAATTTAATTTTTTAAAAATAATTCAAATATAATTAATGCATTGAAATATT-TAT
571 -AAA--T-A--AATTTAATTTTTTAAAAATAATTCAAATATAATCAATGCATTGAAATATTATAT
* * *
13713906 GAAATTAAATAAAATTAATTACATGTAAAACACATGTCACTTGTTTACATCGTCTACATACCCAT
630 GAAATTAAATAAAATTAATTAAATGCAAAACACATGTCAATTGTTTACATCGTCTACATACCCAT
13713971 CTTAGA
695 CTTAGA
**
13713977 TTTTTTTTCCT-TTTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAACGTATGAAT
1 TTTTTTTTCCTGTTTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAAAATATGAAT
* * * *
13714041 TTAATTGAGAATGATTTAAGGTAAA-AAGTAACAAAAAATTAATGCAATTAATTTAATTTTTTTT
66 TTAATTGAAAATGATTTAAGGTAAATAA-TAACAAAAAATAAATGCAATTAATTTAAATTTTTTA
* ** *
13714105 TAAATAATTCAAATAAAAAAAATATAGGACACATGAAGATTTTCAAGATTGTCTACATATCAGCA
130 AAAATAATTCAAATAAAAAAAATATAGGACACA-GAAGATTTTCAAGACCGTCTACATATCAACA
*
13714170 ATATACAACATTGGAAAATTTTCTTTTTTACTAAAGGTTTTGATTTTTATATATCTTATATAAGA
194 ATATACAACATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTATATAAGA
*
13714235 TAATGCTAATGACATTAATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTGAGCATCT
259 TAATGCTAATGACATTAATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTAAGCATCT
* * *
13714300 TTTAATCATTTTAAAATTAATATATATATACATATTAAATATATATACATAGCTTGGTGAAGTAT
324 TTTAATAATTTTAAAATTAATATATATATACAAATTAAACATATATACATAGCTTGGTGAAGTAT
* *
13714365 ATAAACAAGCCATAGAGTAAAAAATCGGAAAGTGAATATTTTTTTAACACAAATGTAATTTAGGA
389 ATAAACAAGCCA-AGAGTAAAAAATCGGAAAGTGAATATTTTTTTAACACAAATATAATTTAGAA
*
13714430 ATTGAGTATTACAATTAGAAAAAGAGAACATAAAATTATCCTATAATGATGGTAATTAAAGTTTT
453 ATTGAATATTACAATTAGAAAAAGAGAACATAAAATTATCCTATAATGATGGTAATTAAAGTTTT
*
13714495 ATTACCTTAAATATGAATTTAATTGAGAGTGATTTAAGGTAAATAATAATAAAAAATAAATTTAA
518 ATTACCTTAAATATGAATTTAATTGAGAGTGATTTAAGGAAAATAATAATAAAAAATAAATTTAA
13714560 TTTTTTAAAAATAATTCAAATATAATCAATGCATTGAAATATTATATGAAATTAAATAAAATTAA
583 TTTTTTAAAAATAATTCAAATATAATCAATGCATTGAAATATTATATGAAATTAAATAAAATTAA
13714625 TTAAATGCAAAACACATGTCAATTGTTTA
648 TTAAATGCAAAACACATGTCAATTGTTTA
13714654 TATAAGATTA
Statistics
Matches: 618, Mismatches: 45, Indels: 37
0.88 0.06 0.05
Matches are distributed among these distances:
700 49 0.08
701 47 0.08
702 1 0.00
703 1 0.00
704 74 0.12
705 63 0.10
706 4 0.01
707 50 0.08
708 16 0.03
709 266 0.43
710 46 0.07
711 1 0.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (700 bp):
TTTTTTTTCCTGTTTTTTATCAAAAGTTTTGGTTTTTATATATTTATATAAGATAAAATATGAAT
TTAATTGAAAATGATTTAAGGTAAATAATAACAAAAAATAAATGCAATTAATTTAAATTTTTTAA
AAATAATTCAAATAAAAAAAATATAGGACACAGAAGATTTTCAAGACCGTCTACATATCAACAAT
ATACAACATTGGAAAATTTTCTTTTTTACCAAAGGTTTTGATTTTTATATATCTTATATAAGATA
ATGCTAATGACATTAATTTTGTTTGATATATTCCAAAATTAATTTTAATTGATTTAAGCATCTTT
TAATAATTTTAAAATTAATATATATATACAAATTAAACATATATACATAGCTTGGTGAAGTATAT
AAACAAGCCAAGAGTAAAAAATCGGAAAGTGAATATTTTTTTAACACAAATATAATTTAGAAATT
GAATATTACAATTAGAAAAAGAGAACATAAAATTATCCTATAATGATGGTAATTAAAGTTTTATT
ACCTTAAATATGAATTTAATTGAGAGTGATTTAAGGAAAATAATAATAAAAAATAAATTTAATTT
TTTAAAAATAATTCAAATATAATCAATGCATTGAAATATTATATGAAATTAAATAAAATTAATTA
AATGCAAAACACATGTCAATTGTTTACATCGTCTACATACCCATCTTAGA
Found at i:13714343 original size:17 final size:18
Alignment explanation
Indices: 13714315--13714350 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
13714305 TCATTTTAAA
13714315 ATTAATATATATATACAT
1 ATTAATATATATATACAT
13714333 ATTAA-ATATATATACAT
1 ATTAATATATATATACAT
13714350 A
1 A
13714351 GCTTGGTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTAATATATATATACAT
Found at i:13714811 original size:27 final size:25
Alignment explanation
Indices: 13714752--13714812 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
13714742 GATTAAATTT
*
13714752 TATAA-TATAAGATTATATATTTAA
1 TATAATTATAAGATTAAATATTTAA
13714776 -ATCAGATTATAAAGATTAAATATTATAA
1 TAT-A-ATTAT-AAGATTAAATATT-TAA
13714804 TATAATTAT
1 TATAATTAT
13714813 TTTTATTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
23 2 0.07
24 1 0.03
25 1 0.03
26 3 0.10
27 17 0.57
28 4 0.13
29 2 0.07
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (25 bp):
TATAATTATAAGATTAAATATTTAA
Found at i:13714825 original size:40 final size:40
Alignment explanation
Indices: 13714723--13714856 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 40
13714713 TATCAAAAGC
* *
13714723 AAATATTTTTATT-A--ATAAGGATTAAATTTTATAATAT
1 AAATATTTTTATTAATTATAAAGATTAAATATTATAATAT
*
13714760 AAGATTATATATTTAAATCAGATTATAAAGATTAAATATTATAATAT
1 AA-A-TAT-T-TTT--ATTA-ATTATAAAGATTAAATATTATAATAT
* * *
13714807 AATTATTTTTATTAATTATACATATTAAATATTATAATAT
1 AAATATTTTTATTAATTATAAAGATTAAATATTATAATAT
13714847 AAATATTTTT
1 AAATATTTTT
13714857 GTAAATTGGC
Statistics
Matches: 79, Mismatches: 8, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
37 2 0.03
38 1 0.01
39 3 0.04
40 34 0.43
41 6 0.08
43 5 0.06
44 1 0.01
45 4 0.05
47 23 0.29
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.48
Consensus pattern (40 bp):
AAATATTTTTATTAATTATAAAGATTAAATATTATAATAT
Found at i:13714851 original size:14 final size:14
Alignment explanation
Indices: 13714792--13714853 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
13714782 TTATAAAGAT
13714792 TAAATATTATAATA
1 TAAATATTATAATA
* *
13714806 TAATTATT-T-TTA
1 TAAATATTATAATA
*
13714818 T-TA-ATTATACATA
1 TAAATATTATA-ATA
13714831 TTAAATATTATAATA
1 -TAAATATTATAATA
13714846 TAAATATT
1 TAAATATT
13714854 TTTGTAAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
10 3 0.08
11 1 0.03
12 3 0.08
13 3 0.08
14 16 0.44
15 4 0.11
16 6 0.17
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TAAATATTATAATA
Found at i:13715638 original size:22 final size:22
Alignment explanation
Indices: 13715613--13715662 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
13715603 TTATTGATTG
13715613 AATTAAATTTAGA-T-ATTTTTAA
1 AATTAAATTT-GATTAATTTTT-A
*
13715635 AATTTAATTTGATTAATTTTTA
1 AATTAAATTTGATTAATTTTTA
13715657 AATTAA
1 AATTAA
13715663 TTAAATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 2 0.08
22 16 0.67
23 6 0.25
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
AATTAAATTTGATTAATTTTTA
Found at i:13715961 original size:41 final size:41
Alignment explanation
Indices: 13715896--13715985 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 41
13715886 GAATTAGTCA
13715896 AAAATTAA--AAAAATTTAAAATTATTTTTGATAATCAATT
1 AAAATTAATTAAAAATTTAAAATTATTTTTGATAATCAATT
* * * *
13715935 GAAATTAATTAAAAATTTTAAATTATTTTTTATAATTAATT
1 AAAATTAATTAAAAATTTAAAATTATTTTTGATAATCAATT
13715976 AAAATTAATT
1 AAAATTAATT
13715986 TGATAATTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 7 0.16
41 37 0.84
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (41 bp):
AAAATTAATTAAAAATTTAAAATTATTTTTGATAATCAATT
Found at i:13718807 original size:13 final size:13
Alignment explanation
Indices: 13718789--13718813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13718779 TTTCTTCACT
13718789 AAAAAGGAAAAAG
1 AAAAAGGAAAAAG
13718802 AAAAAGGAAAAA
1 AAAAAGGAAAAA
13718814 AAGCACATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (13 bp):
AAAAAGGAAAAAG
Found at i:13725173 original size:2 final size:2
Alignment explanation
Indices: 13725168--13725230 Score: 72
Period size: 2 Copynumber: 31.0 Consensus size: 2
13725158 ATATATAGGG
* * * *
13725168 TA TA TA TA TA TA TA TT TA TA TA TA TA AA GGA TA TA TA TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
*
13725211 TA TA TA TA TA TA AA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
13725231 AGCAACATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
2 50 0.98
3 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (2 bp):
TA
Found at i:13725201 original size:29 final size:29
Alignment explanation
Indices: 13725169--13725224 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
13725159 TATATAGGGT
* *
13725169 ATATATATATATATTTATATATATAAAGG
1 ATATATATATACATATATATATATAAAGG
13725198 ATATATATATACATATATATATATAAA
1 ATATATATATACATATATATATATAAA
13725225 TATATAAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (29 bp):
ATATATATATACATATATATATATAAAGG
Found at i:13725756 original size:512 final size:513
Alignment explanation
Indices: 13725210--13726228 Score: 1797
Period size: 513 Copynumber: 2.0 Consensus size: 513
13725200 ATATATATAC
*
13725210 ATATATATATATAAATATATAAGCAACATATAAATCGTATTCAGGATTTTTAAATTTGTAGTTAA
1 ATATATATATATAAATATATAAACAACATATAAATCGTATTCAGGATTTTTAAATTTGTAGTTAA
13725275 AATGTTATTATCAGAAAATGAAATATTATCGATAAAAAATTTCGACAGTAATATTTCATTTTTCA
66 AATGTTATTATCAGAAAATGAAATATTATCGATAAAAAATTTCGACAGTAATATTTCATTTTTCA
*
13725340 TCAATAATAATATTATCTATGGATTTATCGA-AAAAAAATTTTGTTGGTGTTATCATGATCGATA
131 TCAATAATAATATTATCAATGGATTTATCGATAAAAAAATTTTGTTGGTGTTATCATGATCGATA
* *
13725404 ATATAATTCTATCGATATTATAAAATTTCATCAATAAATTAGTATCAAAATTTTTATTTACTAAC
196 ATATAATTCTATCGATATTATAAAATTTCAACAATAAATTAGTAACAAAATTTTTATTTACTAAC
*
13725469 ATAATTTTTTGTTGGTAATAATATTTTTTCTATCAATATATTAAGTTAATAAATTTTTTTCAAAA
261 ATAATTTTTTGTTGGTAATAATATTTTTTCCATCAATATATTAAGTTAATAAATTTTTTTCAAAA
* * * *
13725534 TTAATTTATAATTTTGCCAAAAATTCCTTTGATTATAGTTAAAATTTCGATGGTAATAGTTAATA
326 TTAATTTATAATTTTGCAAAAAAATCCTTTGATAATAGTTAAAATTTCAATGGTAATAGTTAATA
13725599 TTTCCGTTAGTAATACTTTTTTAAATAATATTTAATTATATTTTATTTATAATTTTTGTCATTTT
391 TTTCCGTTAGTAATACTTTTTTAAATAATATTTAATTATATTTTATTTATAATTTTTGTCATTTT
13725664 ATTCTAATTTTTAAATTTGTTTTTAAAATAATTAAATGAATATTAAGATATATAGGGT
456 ATTCTAATTTTTAAATTTGTTTTTAAAATAATTAAATGAATATTAAGATATATAGGGT
* * * *
13725722 ATATATGTTTATATATATATAAACAACATATAAATCGTATTCAGGATTTTTTAATTTGTAGTTAA
1 ATATATATATATAAATATATAAACAACATATAAATCGTATTCAGGATTTTTAAATTTGTAGTTAA
* *
13725787 AATGTTATTATCAGAAAATGAAATATTATCGATAAAATATTTCGTCAGTAATATTTCATTTTTCA
66 AATGTTATTATCAGAAAATGAAATATTATCGATAAAAAATTTCGACAGTAATATTTCATTTTTCA
13725852 TCAATAATAATATTATCAATGGATTTATCGATAAAAAAATTTTGTTGGTGTTATCATGATCGATA
131 TCAATAATAATATTATCAATGGATTTATCGATAAAAAAATTTTGTTGGTGTTATCATGATCGATA
* ** **
13725917 ATATAATTCTATCGATATTTTAAAATTTCAACTGTAAATTAGTAACCTAATTTTTATTTACTAAC
196 ATATAATTCTATCGATATTATAAAATTTCAACAATAAATTAGTAACAAAATTTTTATTTACTAAC
* *** *
13725982 ATAATTTTTTGTTGGTAATAATTTTTTTTCCATTGGTATATTAAGTTAATAATTTTTTTTCAAAA
261 ATAATTTTTTGTTGGTAATAATATTTTTTCCATCAATATATTAAGTTAATAAATTTTTTTCAAAA
13726047 TTAATTTATAATTTTGCAAAAAAATCCTTTGATAATAGTTAAAATTTCAATGGTAATAGTTAATA
326 TTAATTTATAATTTTGCAAAAAAATCCTTTGATAATAGTTAAAATTTCAATGGTAATAGTTAATA
13726112 TTTCCGTTAGTAATACTTTTTTAAATAATATTTAATTATATTTTATTTATAATTTTTGTCATTTT
391 TTTCCGTTAGTAATACTTTTTTAAATAATATTTAATTATATTTTATTTATAATTTTTGTCATTTT
*
13726177 ATTCTAATTTTTAAATTTGTTTTTAAGATAATTAAATGAATATTAAGATATA
456 ATTCTAATTTTTAAATTTGTTTTTAAAATAATTAAATGAATATTAAGATATA
13726229 CATAAATAGA
Statistics
Matches: 480, Mismatches: 26, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
512 153 0.32
513 327 0.68
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.46
Consensus pattern (513 bp):
ATATATATATATAAATATATAAACAACATATAAATCGTATTCAGGATTTTTAAATTTGTAGTTAA
AATGTTATTATCAGAAAATGAAATATTATCGATAAAAAATTTCGACAGTAATATTTCATTTTTCA
TCAATAATAATATTATCAATGGATTTATCGATAAAAAAATTTTGTTGGTGTTATCATGATCGATA
ATATAATTCTATCGATATTATAAAATTTCAACAATAAATTAGTAACAAAATTTTTATTTACTAAC
ATAATTTTTTGTTGGTAATAATATTTTTTCCATCAATATATTAAGTTAATAAATTTTTTTCAAAA
TTAATTTATAATTTTGCAAAAAAATCCTTTGATAATAGTTAAAATTTCAATGGTAATAGTTAATA
TTTCCGTTAGTAATACTTTTTTAAATAATATTTAATTATATTTTATTTATAATTTTTGTCATTTT
ATTCTAATTTTTAAATTTGTTTTTAAAATAATTAAATGAATATTAAGATATATAGGGT
Found at i:13733399 original size:54 final size:54
Alignment explanation
Indices: 13733313--13733425 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
13733303 ATCAAATGTA
13733313 TGCAATAGATCACTTCAATTGAGATATAAAACCTAGATATATCTCATTAGGTAC
1 TGCAATAGATCACTTCAATTGAGATATAAAACCTAGATATATCTCATTAGGTAC
** * * *
13733367 TGCAATAGATCACTTCTGTTGAGATATGAAACCTAGATATATTTCATTAGGTAT
1 TGCAATAGATCACTTCAATTGAGATATAAAACCTAGATATATCTCATTAGGTAC
13733421 TGCAA
1 TGCAA
13733426 GCAGTGAAAG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (54 bp):
TGCAATAGATCACTTCAATTGAGATATAAAACCTAGATATATCTCATTAGGTAC
Found at i:13735112 original size:11 final size:11
Alignment explanation
Indices: 13735096--13735140 Score: 90
Period size: 11 Copynumber: 4.1 Consensus size: 11
13735086 AAATTTTAAC
13735096 AATTCTTGATG
1 AATTCTTGATG
13735107 AATTCTTGATG
1 AATTCTTGATG
13735118 AATTCTTGATG
1 AATTCTTGATG
13735129 AATTCTTGATG
1 AATTCTTGATG
13735140 A
1 A
13735141 TTTTTTATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 34 1.00
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (11 bp):
AATTCTTGATG
Found at i:13739798 original size:21 final size:20
Alignment explanation
Indices: 13739752--13739798 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
13739742 TCTTGGAAAA
* *
13739752 TCTTGAAGATTTTTGATGTT
1 TCTTAAAGATTTTTGATGAT
*
13739772 TTTTAAAGATTTTTGGATGAT
1 TCTTAAAGATTTTT-GATGAT
13739793 TCTTAA
1 TCTTAA
13739799 TGCACTATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.26, C:0.04, G:0.17, T:0.53
Consensus pattern (20 bp):
TCTTAAAGATTTTTGATGAT
Found at i:13758460 original size:75 final size:74
Alignment explanation
Indices: 13758339--13758489 Score: 169
Period size: 75 Copynumber: 2.0 Consensus size: 74
13758329 TATTTAAAAT
* * *
13758339 TTAAAGATTTTCATTTAAGAGTTAAAAGATTCACATAGGAATTTCAAAGATTCAAATTTAAAAAA
1 TTAAAGATTTGCATTTAAGAGTTAAAAGATTCAAATAGGAAATTCAAAGATTCAAATTTAAAAAA
13758404 TTTTAGAGA
66 TTTTAGAGA
* ** * *** *
13758413 TTAAAGATTTGCATTTGAAGAGTTCTAAA-ATTCAAATTTGAAATTCAAATATTTGCATTTGAAA
1 TTAAAGATTTGCATTT-AAGAGTT-AAAAGATTCAAATAGGAAATTCAAAGATTCAAATTTAAAA
*
13758477 ACTTTTAGAGA
64 AATTTTAGAGA
13758488 TT
1 TT
13758490 TTCATCTAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
74 15 0.24
75 45 0.71
76 3 0.05
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (74 bp):
TTAAAGATTTGCATTTAAGAGTTAAAAGATTCAAATAGGAAATTCAAAGATTCAAATTTAAAAAA
TTTTAGAGA
Found at i:13758574 original size:21 final size:21
Alignment explanation
Indices: 13758498--13758586 Score: 72
Period size: 21 Copynumber: 4.1 Consensus size: 21
13758488 TTTTCATCTA
*
13758498 AAATTCAAAAATTCACATATG
1 AAATTCAAAGATTCACATATG
* **
13758519 AACTTCAAAGATTCGTAT-TGGG
1 AAATTCAAAGATTCACATAT--G
* *
13758541 AAAATTTAGAGATTCACATATG
1 -AAATTCAAAGATTCACATATG
**
13758563 AAATTCAAAGATTTGCATATG
1 AAATTCAAAGATTCACATATG
13758584 AAA
1 AAA
13758587 ATTTTGGATT
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
20 1 0.02
21 34 0.67
22 2 0.04
23 13 0.25
24 1 0.02
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.30
Consensus pattern (21 bp):
AAATTCAAAGATTCACATATG
Found at i:13758674 original size:44 final size:44
Alignment explanation
Indices: 13758512--13758762 Score: 163
Period size: 44 Copynumber: 5.7 Consensus size: 44
13758502 TCAAAAATTC
* * * * * *
13758512 ACATATGAACTTCAAAGATTCGTATTGGGAAAA-TTTAGAGATTC
1 ACATATAAAATTCAAATATTCATATT-TGAAAATTTTAGAGATTT
* * *
13758556 ACATATGAAATTCAAAGATTTGCATA--TGAAAATTTT-G-GATTC
1 ACATATAAAATTCAAATA-TT-CATATTTGAAAATTTTAGAGATTT
* ** * *
13758598 A-ACTCTAAAATGAAAAGATTCATATTTAAAAATTTTAGAGATTT
1 ACA-TATAAAATTCAAATATTCATATTTGAAAATTTTAGAGATTT
* * * *
13758642 ACATATAAAGTTCAAATATTCACATTTGAAAATTTTGGAGATTC
1 ACATATAAAATTCAAATATTCATATTTGAAAATTTTAGAGATTT
* * * * *
13758686 GCATAAAAAATTTCCAATATTCAAATTTGAAAAATTTTAGAGAATT
1 ACATATAAAA-TTCAAATATTCATATTTG-AAAATTTTAGAGATTT
* * * *
13758732 CCATCTAAAATTCAAAAATTCATATTAGAAA
1 ACATATAAAATTCAAATATTCATATTTGAAA
13758763 CTCAAAGACT
Statistics
Matches: 163, Mismatches: 33, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
40 4 0.02
41 3 0.02
42 26 0.16
43 7 0.04
44 67 0.41
45 33 0.20
46 23 0.14
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.34
Consensus pattern (44 bp):
ACATATAAAATTCAAATATTCATATTTGAAAATTTTAGAGATTT
Found at i:13758742 original size:46 final size:46
Alignment explanation
Indices: 13758615--13758762 Score: 144
Period size: 45 Copynumber: 3.3 Consensus size: 46
13758605 AAATGAAAAG
* * * *
13758615 ATTCATATTT-AAAAATTTTAGAGATTTACATAT-AAAGTTCAAAT
1 ATTCAAATTTGAAAAATTTTAGAGAATTCCATATAAAATTTCAAAT
* * * *
13758659 ATTCACATTTG-AAAATTTTGGAG-ATTCGCATAAAAAATTTCCAAT
1 ATTCAAATTTGAAAAATTTTAGAGAATTC-CATATAAAATTTCAAAT
* *
13758704 ATTCAAATTTGAAAAATTTTAGAGAATTCCATCTAAAA-TTCAAAA
1 ATTCAAATTTGAAAAATTTTAGAGAATTCCATATAAAATTTCAAAT
* *
13758749 ATTCATATTAGAAA
1 ATTCAAATTTGAAA
13758763 CTCAAAGACT
Statistics
Matches: 84, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
43 2 0.02
44 24 0.29
45 36 0.43
46 18 0.21
47 4 0.05
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.36
Consensus pattern (46 bp):
ATTCAAATTTGAAAAATTTTAGAGAATTCCATATAAAATTTCAAAT
Found at i:13759568 original size:34 final size:35
Alignment explanation
Indices: 13759488--13759573 Score: 111
Period size: 35 Copynumber: 2.5 Consensus size: 35
13759478 ACTATACAGG
* * * *
13759488 GCTTAACATTTTATCATCACGGTCAATTAAGCTTG
1 GCTTAACATTTTCTCATCACGGCCAACTAAGCTTA
* *
13759523 GTTTAACATTTTCTCATCATGGCCAACTAAGC-TA
1 GCTTAACATTTTCTCATCACGGCCAACTAAGCTTA
13759557 GCTTAACATTTTCTCAT
1 GCTTAACATTTTCTCAT
13759574 TAATATAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 17 0.39
35 27 0.61
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (35 bp):
GCTTAACATTTTCTCATCACGGCCAACTAAGCTTA
Found at i:13764683 original size:105 final size:105
Alignment explanation
Indices: 13764471--13764675 Score: 304
Period size: 105 Copynumber: 2.0 Consensus size: 105
13764461 TGTATATGAC
* * * *
13764471 AGTGTTTTTCATGGAAAGGCTAACATATAACTTTCCTTAATGTAATACCTTATATAAAAGATTCA
1 AGTGTTTTTCATGGAAAGGCTAACACATAACTTTCCTCAATGTAACACCTTATAGAAAAGATTCA
* *
13764536 GTGTTAATTTCAATTATTCATAAATATATAAAAAGCAATA
66 GTATTAATTTCAATTATTCAAAAATATATAAAAAGCAATA
* * * *
13764576 AGTGTTTTTCAT-GAAAGAGTTAACACATAACTTTTCTCAATGTTACACTTTATAGAAAAGATTC
1 AGTGTTTTTCATGGAAAG-GCTAACACATAACTTTCCTCAATGTAACACCTTATAGAAAAGATTC
13764640 AGTATTAATTTCAATTATTCAAAAATATATAAAAAG
65 AGTATTAATTTCAATTATTCAAAAATATATAAAAAG
13764676 TAGTAAGTAT
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
104 5 0.06
105 84 0.94
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.37
Consensus pattern (105 bp):
AGTGTTTTTCATGGAAAGGCTAACACATAACTTTCCTCAATGTAACACCTTATAGAAAAGATTCA
GTATTAATTTCAATTATTCAAAAATATATAAAAAGCAATA
Found at i:13769498 original size:21 final size:23
Alignment explanation
Indices: 13769460--13769509 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 23
13769450 TTTCCTCAAA
13769460 AATAAATAAATGAAT-AAA-AAA
1 AATAAATAAATGAATAAAATAAA
**
13769481 AATAAACTAAA-GGTTAAAATAAA
1 AATAAA-TAAATGAATAAAATAAA
13769504 AATAAA
1 AATAAA
13769510 AATGGTCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 8 0.33
22 7 0.29
23 9 0.38
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (23 bp):
AATAAATAAATGAATAAAATAAA
Found at i:13771788 original size:26 final size:26
Alignment explanation
Indices: 13771758--13771815 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
13771748 TCGTGTCTTT
13771758 TATATTTCTATAGATATATAATTATA
1 TATATTTCTATAGATATATAATTATA
13771784 TATATTTCTATAGATATATAATTATA
1 TATATTTCTATAGATATATAATTATA
13771810 TA-ATTT
1 TATATTT
13771816 TTAAAGTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 4 0.12
26 28 0.88
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.52
Consensus pattern (26 bp):
TATATTTCTATAGATATATAATTATA
Found at i:13771893 original size:2 final size:2
Alignment explanation
Indices: 13771886--13771913 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13771876 TTTGCTCTTT
13771886 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13771914 AAAGAGGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13773353 original size:4 final size:4
Alignment explanation
Indices: 13773344--13773368 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
13773334 TGAAATGAGC
13773344 CAGG CAGG CAGG CAGG CAGG CAGG C
1 CAGG CAGG CAGG CAGG CAGG CAGG C
13773369 GAGGGGCTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (4 bp):
CAGG
Found at i:13776813 original size:3 final size:3
Alignment explanation
Indices: 13776805--13776908 Score: 106
Period size: 3 Copynumber: 34.3 Consensus size: 3
13776795 AAAAGAAATA
* *
13776805 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC ATAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * *
13776854 AAT -AT AAT -AT TAT ACCAT AAT AAT ACAT TAT AGT -AT AAT AAT AAT
1 AAT AAT AAT AAT AAT A--AT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
13776899 AAT AAT AAT A
1 AAT AAT AAT A
13776909 TAAATAGCAT
Statistics
Matches: 87, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
2 5 0.06
3 74 0.85
4 5 0.06
5 3 0.03
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:13776943 original size:67 final size:64
Alignment explanation
Indices: 13776801--13776971 Score: 172
Period size: 64 Copynumber: 2.6 Consensus size: 64
13776791 ACAAAAAAGA
* *
13776801 AATAA-ATAATAATAATAATAATAATAATAATAATAATAATAATAATAACATACAATATAATAT
1 AATAACATAATAATAATTATACTAATAATAATAATAATAATAATAATAACATACAATATAATAT
* * *
13776864 TATACCATAATAATACATTATAGT-ATAATAATAATAATAATAAT-ATAA-ATAGCATATTATAC
1 AATAACATAATAATA-ATTATACTAATAATAATAATAATAATAATAATAACATA-CA-A-TATA-
13776926 CATAGT
61 -ATA-T
* *
13776932 AATAACA-AATAATAATTCTACTAATAATATACAATAATAA
1 AATAACATAATAATAATTATACTAATAATA-ATAATAATAA
13776972 CAAAAACTAA
Statistics
Matches: 89, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
62 3 0.03
63 9 0.10
64 30 0.34
65 10 0.11
66 6 0.07
67 16 0.18
68 15 0.17
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (64 bp):
AATAACATAATAATAATTATACTAATAATAATAATAATAATAATAATAACATACAATATAATAT
Found at i:13776944 original size:52 final size:56
Alignment explanation
Indices: 13776815--13776967 Score: 172
Period size: 57 Copynumber: 2.8 Consensus size: 56
13776805 AATAATAATA
* * *
13776815 ATAATAATA-ATAATAATAATAATAATAATAATAACATACAATATAATATTATACC
1 ATAATAATACATCATAATAATAATAATAATAATAATATACAATAGAATATTATACC
* *
13776870 ATAATAATACATTATAGTATAATAATAATAATAATAATATA-AATAGCATATTATACC
1 ATAATAATACATCATA--ATAATAATAATAATAATAATATACAATAGAATATTATACC
* ** *
13776927 ATAGTAATA-A-CA-AATAATAATTCTACTAATAATATACAATA
1 ATAATAATACATCATAATAATAATAATAATAATAATATACAATA
13776968 ATAACAAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
52 20 0.24
53 4 0.05
54 1 0.01
55 10 0.12
56 6 0.07
57 22 0.26
58 22 0.26
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (56 bp):
ATAATAATACATCATAATAATAATAATAATAATAATATACAATAGAATATTATACC
Found at i:13777347 original size:120 final size:119
Alignment explanation
Indices: 13777171--13777451 Score: 321
Period size: 120 Copynumber: 2.3 Consensus size: 119
13777161 TGAAACCATG
**
13777171 AGTCAAGAAATGATCTAGGTTAAGCCGAGATCGAATGATCGAGATAAAATCATAAGTCTAAAGAT
1 AGTCAAGAAATGATCTAGAATAAGCCGAGATCGAATGATCGAGATAAAATCATAAGTCTAAAGAT
* *
13777236 AAAGTAACCAGGACTAAGTTG-AGATAAAAAATGAATGATCGAGATAAAACCACA
66 AAAGTAACCAGGACTAAGTCGAAG-TAAAAAATGAATGATCAAGATAAAACCACA
* * * * * *
13777290 AGTCAGGAAAGTGATCTAGAATGAGCCGAGATTGGATGATGGGGATAAAATCATAAGTCTAAAGA
1 AGTCAAGAAA-TGATCTAGAATAAGCCGAGATCGAATGATCGAGATAAAATCATAAGTCTAAAGA
* * * * * * ***
13777355 TAAAGTGATCAGGATTGAGTCGAAGTCAAAAATGAATGATCAAGATAAAATCGTG
65 TAAAGTAACCAGGACTAAGTCGAAGTAAAAAATGAATGATCAAGATAAAACCACA
* * **
13777410 AGTCAAGAAAATGATTTAGACTAAGCTAAGATCGAATGATCG
1 AGTCAAG-AAATGATCTAGAATAAGCCGAGATCGAATGATCG
13777452 GGACGAAATT
Statistics
Matches: 131, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
119 9 0.07
120 117 0.89
121 5 0.04
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (119 bp):
AGTCAAGAAATGATCTAGAATAAGCCGAGATCGAATGATCGAGATAAAATCATAAGTCTAAAGAT
AAAGTAACCAGGACTAAGTCGAAGTAAAAAATGAATGATCAAGATAAAACCACA
Found at i:13781407 original size:14 final size:14
Alignment explanation
Indices: 13781372--13781400 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13781362 AAATGCAAAT
13781372 AAATAAAAACTAAA
1 AAATAAAAACTAAA
13781386 AAATAAAAA-TAAA
1 AAATAAAAACTAAA
13781399 AA
1 AA
13781401 CTTAAAAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATAAAAACTAAA
Found at i:13781437 original size:21 final size:21
Alignment explanation
Indices: 13781372--13781442 Score: 58
Period size: 20 Copynumber: 3.4 Consensus size: 21
13781362 AAATGCAAAT
*
13781372 AAATAAAAACT-AAAA-AATAA
1 AAATAAAAAATCAAAAGAAT-A
* * *
13781392 AAATAAAAACTTAAAAGAATG
1 AAATAAAAAATCAAAAGAATA
13781413 AAATCAAAAAATCAAAA-AATA
1 AAAT-AAAAAATCAAAAGAATA
*
13781434 AAATGAAAA
1 AAATAAAAA
13781443 TGGAAAAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 15 0.35
21 15 0.35
22 13 0.30
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.15
Consensus pattern (21 bp):
AAATAAAAAATCAAAAGAATA
Found at i:13781951 original size:20 final size:20
Alignment explanation
Indices: 13781931--13781978 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
13781921 TAATCCAAAC
*
13781931 CCCAAAAACC-TAAATCTAA
1 CCCAAAAACCTTAAATCGAA
*
13781950 CCCAGAAACCTTAAATCGAA
1 CCCAAAAACCTTAAATCGAA
13781970 TCCCAAAAA
1 -CCCAAAAA
13781979 TTCAAATCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 9 0.38
20 8 0.33
21 7 0.29
ACGTcount: A:0.50, C:0.31, G:0.04, T:0.15
Consensus pattern (20 bp):
CCCAAAAACCTTAAATCGAA
Found at i:13782370 original size:19 final size:19
Alignment explanation
Indices: 13782329--13782375 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
13782319 AAAAGAAATA
*
13782329 AATAATAATAACAAATTAT
1 AATAATAATAACAAATTAC
*
13782348 AATAATAATAATAACA-TAC
1 AATAATAATAACAA-ATTAC
13782367 AATAA-AATA
1 AATAATAATA
13782376 TTATATCATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.16
19 20 0.80
20 1 0.04
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (19 bp):
AATAATAATAACAAATTAC
Found at i:13782371 original size:22 final size:21
Alignment explanation
Indices: 13782328--13782375 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
13782318 GAAAAGAAAT
**
13782328 AAATAATAATAACAAATTATA
1 AAATAATAATAACAAACAATA
*
13782349 ATAATAATAATAACATACAATA
1 A-AATAATAATAACAAACAATA
13782371 AAATA
1 AAATA
13782376 TTATATCATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (21 bp):
AAATAATAATAACAAACAATA
Found at i:13782388 original size:18 final size:18
Alignment explanation
Indices: 13782367--13782407 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
13782357 AATAACATAC
*
13782367 AATAAAATATTATATCAT
1 AATAAAATATTATACCAT
*
13782385 AATATAATATTATACCAT
1 AATAAAATATTATACCAT
13782403 AATAA
1 AATAA
13782408 TACACTATAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (18 bp):
AATAAAATATTATACCAT
Found at i:13789080 original size:2 final size:2
Alignment explanation
Indices: 13789068--13789111 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
13789058 CCTTTTCAAC
* * *
13789068 AT AT AT GT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13789110 AT
1 AT
13789112 GCATATGCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13789081 original size:8 final size:8
Alignment explanation
Indices: 13789068--13789117 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
13789058 CCTTTTCAAC
13789068 ATATATGT
1 ATATATGT
13789076 ATATA--T
1 ATATATGT
*
13789082 ATATATAT
1 ATATATGT
13789090 ATATATGT
1 ATATATGT
**
13789098 ATATATAC
1 ATATATGT
*
13789106 ATATATGC
1 ATATATGT
13789114 ATAT
1 ATAT
13789118 GCATGTGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 6 0.17
8 30 0.83
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (8 bp):
ATATATGT
Found at i:13789167 original size:6 final size:6
Alignment explanation
Indices: 13789076--13789167 Score: 67
Period size: 6 Copynumber: 14.8 Consensus size: 6
13789066 ACATATATGT
* * * * * * * *
13789076 ATATAT ATATAT ATATAT ATGTAT ATATAC ATATATGC ATATGC ATGTGC
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATA--C ATATAC ATATAC
* *
13789126 ATATGGC ATATGC ATATAC ATATAC ATATAC ATATAC ATATA
1 ATAT-AC ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
13789168 TGTATATGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
6 65 0.86
7 6 0.08
8 5 0.07
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (6 bp):
ATATAC
Found at i:13789173 original size:6 final size:6
Alignment explanation
Indices: 13789164--13789204 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
13789154 TACATATACA
* * *
13789164 TATATG TATATG TATATG TGTGTG TATATG TATATA TATAT
1 TATATG TATATG TATATG TATATG TATATG TATATG TATAT
13789205 ATCATAGTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:13790505 original size:29 final size:29
Alignment explanation
Indices: 13790451--13790510 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
13790441 AAAATATAGT
* *
13790451 AAAATATTTAATATGATATTTGAATTTTA
1 AAAATATATAATATGATATTTGAATTATA
13790480 AAAATATATAATATGATATCTT-AATTATA
1 AAAATATATAATATGATAT-TTGAATTATA
13790509 AA
1 AA
13790511 TCTATTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 26 0.93
30 2 0.07
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (29 bp):
AAAATATATAATATGATATTTGAATTATA
Found at i:13791361 original size:23 final size:23
Alignment explanation
Indices: 13791317--13791361 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
13791307 AAATATATTT
*
13791317 ATAAAAAATAAATAAAGGAAAAG
1 ATAAAAAATAAATAAAGAAAAAG
* * *
13791340 ATAAAAACTAATTCAAGAAAAA
1 ATAAAAAATAAATAAAGAAAAA
13791362 ATTGATTTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.71, C:0.04, G:0.09, T:0.16
Consensus pattern (23 bp):
ATAAAAAATAAATAAAGAAAAAG
Found at i:13791727 original size:14 final size:14
Alignment explanation
Indices: 13791710--13791740 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
13791700 CTTTTTTCTT
13791710 TTTTATAAAACATA
1 TTTTATAAAACATA
*
13791724 TTTTATAAAATATA
1 TTTTATAAAACATA
13791738 TTT
1 TTT
13791741 AAAAAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTATAAAACATA
Found at i:13795159 original size:92 final size:92
Alignment explanation
Indices: 13795002--13795188 Score: 293
Period size: 92 Copynumber: 2.0 Consensus size: 92
13794992 TTGTTGGATA
* * *
13795002 TGAGTACATTCATTTTATTTGTGTATGGATGTATGATACTTTTATGTTTTATGTTATTTTGACTA
1 TGAGTACATTCATTTTATTTGTGTATAGATGTATGATACCTTTATGTTTTATATTATTTTGACTA
* * *
13795067 TTATTTTAGTTTTTCTTACTTCATCAT
66 TTATTTCAATTTTTCTTACATCATCAT
*
13795094 TGAGTACATTCATTTTATTTGTGTATAGATGTATGATACCTTTATGTTTTGTATTATTTTGACTA
1 TGAGTACATTCATTTTATTTGTGTATAGATGTATGATACCTTTATGTTTTATATTATTTTGACTA
* *
13795159 TTGTTTCAATTTTTCTTACATCCTCAT
66 TTATTTCAATTTTTCTTACATCATCAT
13795186 TGA
1 TGA
13795189 ACTAGGTTTT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 86 1.00
ACGTcount: A:0.22, C:0.10, G:0.13, T:0.55
Consensus pattern (92 bp):
TGAGTACATTCATTTTATTTGTGTATAGATGTATGATACCTTTATGTTTTATATTATTTTGACTA
TTATTTCAATTTTTCTTACATCATCAT
Found at i:13796266 original size:25 final size:24
Alignment explanation
Indices: 13796219--13796282 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 24
13796209 ATAAATTTAA
*
13796219 TAAAGAATATAATAAAATGAAAAAATT
1 TAAA-AATA-AATATAATGAAAAAA-T
*
13796246 TATAAAA-AAATATAATTAAAAAAT
1 TA-AAAATAAATATAATGAAAAAAT
13796270 TAAAAATAAATAT
1 TAAAAATAAATAT
13796283 TACCGACGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 4 0.12
24 9 0.27
25 13 0.39
26 1 0.03
27 4 0.12
28 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (24 bp):
TAAAAATAAATATAATGAAAAAAT
Found at i:13796372 original size:15 final size:15
Alignment explanation
Indices: 13796352--13796386 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
13796342 TTATCGATAA
13796352 TTATTGACAAAACAT
1 TTATTGACAAAACAT
*
13796367 TTATTGACAAAATAT
1 TTATTGACAAAACAT
13796382 TTATT
1 TTATT
13796387 TATGAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (15 bp):
TTATTGACAAAACAT
Found at i:13799078 original size:26 final size:27
Alignment explanation
Indices: 13799049--13799131 Score: 71
Period size: 29 Copynumber: 3.0 Consensus size: 27
13799039 AATATTAAAA
13799049 TAAAAAATTTTATTTAATAAA-AATTT
1 TAAAAAATTTTATTTAATAAATAATTT
** * *
13799075 TAAATGATTTAATATTTATTAAATTATTT
1 TAAAAAATTT--TATTTAATAAATAATTT
13799104 TAAATAATCATTTTA-TTAATAAATAATT
1 TAAA-AA--ATTTTATTTAATAAATAATT
13799132 AAAAATAATA
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
26 8 0.19
28 10 0.23
29 19 0.44
30 2 0.05
32 4 0.09
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (27 bp):
TAAAAAATTTTATTTAATAAATAATTT
Found at i:13803488 original size:483 final size:480
Alignment explanation
Indices: 13802580--13803545 Score: 1248
Period size: 483 Copynumber: 2.0 Consensus size: 480
13802570 AGGGTGGTCG
*
13802580 AATATAAAAGAAAAAAAAAGAGCAAGTTGCAAACAATGTAAATGGAATGGAAAGCAAGTAAAATG
1 AATATAAAACAAAAAAAAAGAGCAAGTTGCAAACAATGTAAATGGAATGGAAAGCAAGTAAAATG
* *
13802645 AAAGCTTTAAAGAGAACTTGGAAATGAATTAAACTTTACATTACTTGAAACATAAAAGAAAGAGA
66 AAAGCTTTAAAGAGAACTTGGAAATGAATTAAACTTTACATGACTTGAAACATAAAAAAAAGAGA
* * *
13802710 GCTTTGAAGAAAACTTGAAAAGAAAAACTTGTATTGAGAAATGAGAACTTGAAAACATGAGTTTT
131 ACTTTGAAGAAAACTTGAAAAGAAAAACTTGTATTGAAAAATGAAAACTTGAAAACATGAGTTTT
* *
13802775 TTGGATAGTCTATCACCCTAGTCAAATGGAACTAGAAAATACAAGAAGTGCAACTTAGAACTGAA
196 TTGGATAGTATATCAACCTAGTCAAATGGAACTAGAAAATACAAGAAGTGCAACTTAGAACTGAA
* * * * * * *
13802840 TTAGAAAAGAAAGGAAAAAAATAGAAAATGGGATGTTTTACAAGCGAACTAAAATGGTCTATTTA
261 CTAGAAAAGAAAGGAAAAAAATAAAAAATGAGATGCTTTACAAGCG-A-GAAAA-GGCCTACTTA
* *
13802905 TAATACAAGGCCATGGGTAAGTGAGATGAACCTAGACACTTTCATCATAGCTAAAACTCATTTAA
323 TAATACAAGGCCATAGGTAAGTGAGATGAACCTAAACACTTTCATCATAGCTAAAACTCATTTAA
* * *
13802970 ATTCAAAAAGTGATCTTATTCATCTAGAATGGGATTGCCGACTAGATAGGGAGCTTGTTAAGTTG
388 ATTCAAAAAGTGATCTTATTCAGCTAGAATGGGATTGCCGACTAGATAAGGAGCTTGTTAAGTTA
*
13803035 GTAA-CTTGTATGGCCGAATAGTGAGTTT
453 G-AAGCTTGCATGGCCGAATAGTGAGTTT
* ** * *
13803063 AATATAAAACAAAATAAAAGAGTGAGTT-CTAAACAA-GTAAATGGAATGGATAGCAAGTAAACT
1 AATATAAAACAAAAAAAAAGAGCAAGTTGC-AAACAATGTAAATGGAATGGAAAGCAAGTAAAAT
** *
13803126 GAAAAAGCTTTAAAGAGAACTTGGAAATGAATTAAGTTTTAGATGACTTGAAACATAAAAAAAAA
65 G--AAAGCTTTAAAGAGAACTTGGAAATGAATTAAACTTTACATGACTTGAAACAT--AAAAAAA
* * *
13803191 AGATAACTTTGAAGAAAACTTGAAAA-ACAAACTTGTATTGAAAAATGAAAACTTGAAAATGA-G
126 AGAGAACTTTGAAGAAAACTTGAAAAGAAAAACTTGTATTGAAAAATGAAAACTTGAAAA-CATG
* * ** *
13803254 AGTTTTTTGGCTAGTATATCAATCTAGTTGAATGGAACTAGAAAATACAAGAAGTGTAACTTAGA
190 AGTTTTTTGGATAGTATATCAACCTAGTCAAATGGAACTAGAAAATACAAGAAGTGCAACTTAGA
* * * ** * *
13803319 A-TCGAAACTAGAAAAGAAAAGGAAGAAAGTAAAAAATGATATGCTTTATGAGTTG-GAAGA-GC
255 ACT-G-AACTAGAAAAG-AAAGGAAAAAAATAAAAAATGAGATGCTTTACAAG-CGAGAAAAGGC
*
13803381 CTACTTATAATACAAGGCCATAGGT-AGCTTAGATGAACCTAAACACTTTCATCATAGCTAAAAC
316 CTACTTATAATACAAGGCCATAGGTAAG-TGAGATGAACCTAAACACTTTCATCATAGCTAAAAC
* * * * * *
13803445 TCATTTAAATTCAAAGAGTGATCTTGTTCAGCTATAGTGGGATTGTCGAGTAGATAAGGAGCTTG
380 TCATTTAAATTCAAAAAGTGATCTTATTCAGCTAGAATGGGATTGCCGACTAGATAAGGAGCTTG
* * *
13803510 TTGAGTTAGAAGCTTGCATGGCTGAATGGTGAGTTT
445 TTAAGTTAGAAGCTTGCATGGCCGAATAGTGAGTTT
13803546 GGATTAGTCC
Statistics
Matches: 417, Mismatches: 54, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
482 31 0.07
483 173 0.41
484 50 0.12
485 94 0.23
486 41 0.10
487 27 0.06
488 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.26
Consensus pattern (480 bp):
AATATAAAACAAAAAAAAAGAGCAAGTTGCAAACAATGTAAATGGAATGGAAAGCAAGTAAAATG
AAAGCTTTAAAGAGAACTTGGAAATGAATTAAACTTTACATGACTTGAAACATAAAAAAAAGAGA
ACTTTGAAGAAAACTTGAAAAGAAAAACTTGTATTGAAAAATGAAAACTTGAAAACATGAGTTTT
TTGGATAGTATATCAACCTAGTCAAATGGAACTAGAAAATACAAGAAGTGCAACTTAGAACTGAA
CTAGAAAAGAAAGGAAAAAAATAAAAAATGAGATGCTTTACAAGCGAGAAAAGGCCTACTTATAA
TACAAGGCCATAGGTAAGTGAGATGAACCTAAACACTTTCATCATAGCTAAAACTCATTTAAATT
CAAAAAGTGATCTTATTCAGCTAGAATGGGATTGCCGACTAGATAAGGAGCTTGTTAAGTTAGAA
GCTTGCATGGCCGAATAGTGAGTTT
Found at i:13803965 original size:73 final size:73
Alignment explanation
Indices: 13803878--13804023 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
13803868 AGGCTTTGGC
13803878 CAAATGGTAGCTCATCACTTTTGCATGTGTTGCATGGCTTTCATGCATGGCCACATTTCTTGTCA
1 CAAATGGTAGCTCATCACTTTTGCATGTGTTGCATGGCTTTCATGCATGGCCACATTTCTTGTCA
13803943 CTTTTGCA
66 CTTTTGCA
*
13803951 CAAATGGTAGCTCATCACTTTTGCATGTGTTGCATGGCTTTCATGCATGGTCACATTTCTTGTCA
1 CAAATGGTAGCTCATCACTTTTGCATGTGTTGCATGGCTTTCATGCATGGCCACATTTCTTGTCA
13804016 CTTTTGCA
66 CTTTTGCA
13804024 TATTTTGTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (73 bp):
CAAATGGTAGCTCATCACTTTTGCATGTGTTGCATGGCTTTCATGCATGGCCACATTTCTTGTCA
CTTTTGCA
Found at i:13806669 original size:23 final size:22
Alignment explanation
Indices: 13806633--13806678 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 22
13806623 TAAAATTAAA
13806633 TATTATATTTTGATTTTGCTATT
1 TATTATATTTTGATTTTG-TATT
13806656 TATTA-ATTTATGATTTTGTATT
1 TATTATATTT-TGATTTTGTATT
13806678 T
1 T
13806679 GAAATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.65
Consensus pattern (22 bp):
TATTATATTTTGATTTTGTATT
Found at i:13806679 original size:29 final size:28
Alignment explanation
Indices: 13806635--13806693 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
13806625 AAATTAAATA
** *
13806635 TTATATTTTGATTTTGCTATTTATTAAT
1 TTATATTTTGATTTTGAAATTTAATAAT
13806663 TTATGATTTTG-TATTTGAAATTTAATAAT
1 TTAT-ATTTTGAT-TTTGAAATTTAATAAT
13806692 TT
1 TT
13806694 TTTATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.29, C:0.02, G:0.08, T:0.61
Consensus pattern (28 bp):
TTATATTTTGATTTTGAAATTTAATAAT
Found at i:13808045 original size:10 final size:10
Alignment explanation
Indices: 13808032--13808116 Score: 66
Period size: 10 Copynumber: 8.7 Consensus size: 10
13808022 AAATATTTCA
13808032 AAAAAATTTT
1 AAAAAATTTT
*
13808042 AAAAAATTCT
1 AAAAAATTTT
**
13808052 AAAAGTTTTT
1 AAAAAATTTT
*
13808062 AAAAAGTTTT
1 AAAAAATTTT
*
13808072 AAAAAA-TCT
1 AAAAAATTTT
* *
13808081 GAAATATTTT
1 AAAAAATTTT
* *
13808091 AAAAAACTAT
1 AAAAAATTTT
*
13808101 AGAAAA-TTT
1 AAAAAATTTT
13808110 AAAAAAT
1 AAAAAAT
13808117 AAGAAATATT
Statistics
Matches: 55, Mismatches: 18, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
9 13 0.24
10 42 0.76
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.34
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:13808066 original size:29 final size:29
Alignment explanation
Indices: 13808020--13808095 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
13808010 TCAATATTAA
* *
13808020 TAAAATATTTCAAAAAAATTTTAAAAAATTC
1 TAAAATATTT-TAAAAAGTTTTAAAAAA-TC
13808051 TAAAAGT-TTTTAAAAAGTTTTAAAAAATC
1 TAAAA-TATTTTAAAAAGTTTTAAAAAATC
*
13808080 TGAAATATTTTAAAAA
1 TAAAATATTTTAAAAA
13808096 ACTATAGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
28 1 0.03
29 15 0.38
30 15 0.38
31 8 0.20
32 1 0.03
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (29 bp):
TAAAATATTTTAAAAAGTTTTAAAAAATC
Found at i:13808092 original size:19 final size:19
Alignment explanation
Indices: 13808068--13808135 Score: 77
Period size: 19 Copynumber: 3.6 Consensus size: 19
13808058 TTTTAAAAAG
*
13808068 TTTTAAAAAATCTGAAATA
1 TTTTAAAAAATATGAAATA
13808087 TTTTAAAAAACTATAGAAA-A
1 TTTTAAAAAA-TAT-GAAATA
*
13808107 -TTTAAAAAATAAGAAATA
1 TTTTAAAAAATATGAAATA
*
13808125 TTTTTAAAAAT
1 TTTTAAAAAAT
13808136 TATAAAAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 4 0.10
18 3 0.07
19 28 0.67
20 3 0.07
21 4 0.10
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.35
Consensus pattern (19 bp):
TTTTAAAAAATATGAAATA
Found at i:13808115 original size:38 final size:37
Alignment explanation
Indices: 13808069--13808154 Score: 111
Period size: 38 Copynumber: 2.3 Consensus size: 37
13808059 TTTAAAAAGT
**
13808069 TTTAAAAAATCTGAAATATTTTAAAAAACTATAGAAAA
1 TTTAAAAAATAAGAAATATTTTAAAAAACTATA-AAAA
* *
13808107 TTTAAAAAATAAGAAATATTTTTAAAAATTATAAAAA
1 TTTAAAAAATAAGAAATATTTTAAAAAACTATAAAAA
13808144 -TTAAGAAAATA
1 TTTAA-AAAATA
13808155 TTAAAACTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
36 4 0.09
37 10 0.23
38 29 0.67
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (37 bp):
TTTAAAAAATAAGAAATATTTTAAAAAACTATAAAAA
Found at i:13809367 original size:1 final size:1
Alignment explanation
Indices: 13809361--13809388 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
13809351 TTAAAACGCT
13809361 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
13809389 TCTCCCAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:13811168 original size:16 final size:16
Alignment explanation
Indices: 13811147--13811180 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
13811137 ATGAGAAATT
13811147 AAACTACCATAACAAC
1 AAACTACCATAACAAC
13811163 AAACTACCATAACAAC
1 AAACTACCATAACAAC
13811179 AA
1 AA
13811181 CAGGATGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.59, C:0.29, G:0.00, T:0.12
Consensus pattern (16 bp):
AAACTACCATAACAAC
Found at i:13814871 original size:3 final size:3
Alignment explanation
Indices: 13814856--13814899 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
13814846 GAAAACAAGA
* *
13814856 AAT AAT AAC AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
13814900 CTAAGGAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:13817422 original size:29 final size:29
Alignment explanation
Indices: 13817386--13817452 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
13817376 AATTTTATAC
13817386 TTTT-ATTTA-ACTCAAATAAACCCTTAAA
1 TTTTAATTTACACTCAAATAAACCCTT-AA
* * *
13817414 TTTTAATTTACATTTAAATAAACTCTTAA
1 TTTTAATTTACACTCAAATAAACCCTTAA
*
13817443 TCTTAATTTA
1 TTTTAATTTA
13817453 TATAAGCCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.12
29 16 0.48
30 13 0.39
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.46
Consensus pattern (29 bp):
TTTTAATTTACACTCAAATAAACCCTTAA
Found at i:13817493 original size:29 final size:28
Alignment explanation
Indices: 13817399--13817499 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 28
13817389 TATTTAACTC
* *
13817399 AAATAAACCCTTAAAT-TTTAATTTACATTT
1 AAATAAACACTT-AATCTTTAATTT--ATAT
*
13817429 AAATAAACTCTTAATC-TTAATTTATAT
1 AAATAAACACTTAATCTTTAATTTATAT
*
13817456 AAGCCTAAAC-CTTAATCTTTAATTTATAGCT
1 AA--ATAAACACTTAATCTTTAATTTATA--T
13817487 AAATAAACACTTA
1 AAATAAACACTTA
13817500 TATAAATCAA
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
27 5 0.08
28 7 0.12
29 30 0.50
30 15 0.25
31 3 0.05
ACGTcount: A:0.44, C:0.15, G:0.02, T:0.40
Consensus pattern (28 bp):
AAATAAACACTTAATCTTTAATTTATAT
Found at i:13819322 original size:31 final size:31
Alignment explanation
Indices: 13819287--13819415 Score: 105
Period size: 31 Copynumber: 4.2 Consensus size: 31
13819277 GTGTTGAAGG
* *
13819287 GATTTATATTGAAGTAAATCTATGCCGAGGT
1 GATTTATATCGAAGTAAATATATGCCGAGGT
* * * * *
13819318 GATTTATACCGAAGTGAATCTATGCTGATGT
1 GATTTATATCGAAGTAAATATATGCCGAGGT
* * * *
13819349 GATTTATATCGAAGCAAATATGTACCGAGAT
1 GATTTATATCGAAGTAAATATATGCCGAGGT
* * * * *
13819380 GAGTTATATTGAGGTGAATATATGCCAAGGT
1 GATTTATATCGAAGTAAATATATGCCGAGGT
*
13819411 AATTT
1 GATTT
13819416 CACTGTGGTG
Statistics
Matches: 73, Mismatches: 25, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
31 73 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (31 bp):
GATTTATATCGAAGTAAATATATGCCGAGGT
Found at i:13819766 original size:56 final size:56
Alignment explanation
Indices: 13819657--13819859 Score: 185
Period size: 56 Copynumber: 3.6 Consensus size: 56
13819647 GAGCTAAATC
* * * ** *
13819657 TTTATGAAGGTAATTTACCAAGATGAGTTTTTTGGTTGAAGTAATCGAA-CTAAGCA
1 TTTATGAAGGTAATTTACCAAGATGAGCTTTTTGGTCGATGT-GGCAAAGCTAAGCA
* * *
13819713 TTTATGAAGGTAATTTACCAATATGAGCTCTTTGGTCGATGTGGCAAAGCTAAGCC
1 TTTATGAAGGTAATTTACCAAGATGAGCTTTTTGGTCGATGTGGCAAAGCTAAGCA
* * * * * * * * **
13819769 TTTATAAAAGTAATTTATCGAGACGAGCTTTTTGCTCGTTGTGGCCAAGCTAAGTT
1 TTTATGAAGGTAATTTACCAAGATGAGCTTTTTGGTCGATGTGGCAAAGCTAAGCA
* *
13819825 TTTAT-AGAGGTAATTTACTAAAATGAGCTTTTTGG
1 TTTATGA-AGGTAATTTACCAAGATGAGCTTTTTGG
13819860 CCTGTATGAC
Statistics
Matches: 117, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
55 4 0.03
56 113 0.97
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (56 bp):
TTTATGAAGGTAATTTACCAAGATGAGCTTTTTGGTCGATGTGGCAAAGCTAAGCA
Found at i:13820015 original size:6 final size:6
Alignment explanation
Indices: 13819992--13820029 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
13819982 CCTAAAAATC
* *
13819992 TTAATC TTAATT TTAATT TTAATT TTAGTT TTAATT TT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TT
13820030 GGTTTTGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (6 bp):
TTAATT
Found at i:13820023 original size:18 final size:18
Alignment explanation
Indices: 13819998--13820066 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
13819988 AATCTTAATC
*
13819998 TTAATTTTAATTTTAATT
1 TTAATTTTAATTTTAGTT
* *
13820016 TTAGTTTTAATTTTGGTT
1 TTAATTTTAATTTTAGTT
* **
13820034 TTGATTTTTTTTTTAGTT
1 TTAATTTTAATTTTAGTT
13820052 TT--TGTTTAATTTTAG
1 TTAAT-TTTAATTTTAG
13820067 GTCAAAGTTA
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
16 1 0.03
17 9 0.22
18 30 0.75
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (18 bp):
TTAATTTTAATTTTAGTT
Found at i:13820034 original size:12 final size:12
Alignment explanation
Indices: 13819998--13820066 Score: 68
Period size: 12 Copynumber: 5.8 Consensus size: 12
13819988 AATCTTAATC
*
13819998 TTAATTTTAATT
1 TTAATTTTAGTT
13820010 TTAATTTTAGTT
1 TTAATTTTAGTT
*
13820022 TTAATTTTGGTT
1 TTAATTTTAGTT
* **
13820034 TTGATTTTTTTT
1 TTAATTTTAGTT
* *
13820046 TTAGTTTTTG-T
1 TTAATTTTAGTT
13820057 TTAATTTTAG
1 TTAATTTTAG
13820067 GTCAAAGTTA
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
11 9 0.19
12 38 0.81
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (12 bp):
TTAATTTTAGTT
Found at i:13820101 original size:16 final size:17
Alignment explanation
Indices: 13820070--13820104 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
13820060 ATTTTAGGTC
*
13820070 AAAGTTAAAAGTAAAAA
1 AAAGTAAAAAGTAAAAA
13820087 AAAGTAAAAAG-AAAAA
1 AAAGTAAAAAGTAAAAA
13820103 AA
1 AA
13820105 GTCAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (17 bp):
AAAGTAAAAAGTAAAAA
Found at i:13820111 original size:14 final size:15
Alignment explanation
Indices: 13820083--13820115 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13820073 GTTAAAAGTA
13820083 AAAAAAAGTAAAAAG
1 AAAAAAAGTAAAAAG
*
13820098 AAAAAAAGT-CAAAG
1 AAAAAAAGTAAAAAG
13820112 AAAA
1 AAAA
13820116 GGAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.79, C:0.03, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAAAAGTAAAAAG
Found at i:13821119 original size:23 final size:21
Alignment explanation
Indices: 13821068--13821120 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 21
13821058 TTCCTTTTAT
13821068 TTTTTGATTTTATTTTTTCTTA
1 TTTTT-ATTTTATTTTTTCTTA
*
13821090 TTTTTATTTTCTATTTTTCTTA
1 TTTTTATTTTAT-TTTTTCTTA
13821112 TTTGTTATT
1 TTT-TTATT
13821121 ATAATTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 6 0.21
22 17 0.61
23 5 0.18
ACGTcount: A:0.13, C:0.06, G:0.04, T:0.77
Consensus pattern (21 bp):
TTTTTATTTTATTTTTTCTTA
Found at i:13821332 original size:24 final size:24
Alignment explanation
Indices: 13821276--13821372 Score: 113
Period size: 24 Copynumber: 3.9 Consensus size: 24
13821266 TTTGCATGAA
*
13821276 TGCATGATTATTAATTTATTGTAATAT
1 TGCATGATTATTAATATATT-T-AT-T
* *
13821303 TACATGATTATTAATATGTTTATT
1 TGCATGATTATTAATATATTTATT
* *
13821327 TGCATGATTATTAATATATTAACT
1 TGCATGATTATTAATATATTTATT
*
13821351 TGCTTGATTATTAATATATTTA
1 TGCATGATTATTAATATATTTA
13821373 CTTGTGTGAT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
24 41 0.67
25 2 0.03
26 1 0.02
27 17 0.28
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (24 bp):
TGCATGATTATTAATATATTTATT
Found at i:13821375 original size:24 final size:24
Alignment explanation
Indices: 13821307--13821385 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
13821297 TAATATTACA
* * *
13821307 TGATTATTAATATGTTTATTTGCA
1 TGATTATTAATATATTTACTTGCT
*
13821331 TGATTATTAATATATTAACTTGCT
1 TGATTATTAATATATTTACTTGCT
13821355 TGATTATTAATATATTTACTTG-T
1 TGATTATTAATATATTTACTTGCT
13821378 GTGATTAT
1 -TGATTAT
13821386 ATGATTTACA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
23 1 0.02
24 48 0.98
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.53
Consensus pattern (24 bp):
TGATTATTAATATATTTACTTGCT
Found at i:13821449 original size:29 final size:24
Alignment explanation
Indices: 13821395--13821458 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
13821385 TATGATTTAC
13821395 ATGATATGATTTTATATTTATTGT
1 ATGATATGATTTTATATTTATTGT
* *
13821419 ATGATATGATTTTATGTTTATTGC
1 ATGATATGATTTTATATTTATTGT
*
13821443 ATGGTATGATTTTATA
1 ATGATATGATTTTATA
13821459 GTATTGCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.02, G:0.16, T:0.55
Consensus pattern (24 bp):
ATGATATGATTTTATATTTATTGT
Found at i:13821496 original size:24 final size:24
Alignment explanation
Indices: 13821469--13821557 Score: 90
Period size: 24 Copynumber: 3.6 Consensus size: 24
13821459 GTATTGCATG
*
13821469 ATTTATTGCATGCTATAATTTAAT
1 ATTTATTGCATGATATAATTTAAT
* *
13821493 ATTTATTGCATGATATTATTGCATGAT
1 ATTTATTGCATGATATAATT---TAAT
*
13821520 AATTT-TTGCATGGTATAATTTAAT
1 -ATTTATTGCATGATATAATTTAAT
*
13821544 ATTTATTACATGAT
1 ATTTATTGCATGAT
13821558 TGCATGATTA
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
23 4 0.08
24 28 0.54
27 16 0.31
28 4 0.08
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.49
Consensus pattern (24 bp):
ATTTATTGCATGATATAATTTAAT
Found at i:13821498 original size:59 final size:53
Alignment explanation
Indices: 13821410--13821555 Score: 134
Period size: 59 Copynumber: 2.7 Consensus size: 53
13821400 ATGATTTTAT
* * * * * *
13821410 ATTTATTGTATGATATGATTTTATGTTTATTGCATGGTATGATTTTATAGTATTGCATG
1 ATTTATTGCATGATATAATTTAATATTTATTGCATGG-AT-A--TTATAGCA-TG-ATA
* *
13821469 ATTTATTGCATGCTATAATTTAATATTTATTGCAT-GATATTATTGCATGATA
1 ATTTATTGCATGATATAATTTAATATTTATTGCATGGATATTATAGCATGATA
* *
13821521 ATTT-TTGCATGGTATAATTTAATATTTATTACATG
1 ATTTATTGCATGATATAATTTAATATTTATTGCATG
13821556 ATTGCATGAT
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
51 28 0.37
52 6 0.08
53 2 0.03
54 6 0.08
56 1 0.01
57 2 0.03
58 1 0.01
59 30 0.39
ACGTcount: A:0.29, C:0.05, G:0.14, T:0.51
Consensus pattern (53 bp):
ATTTATTGCATGATATAATTTAATATTTATTGCATGGATATTATAGCATGATA
Found at i:13821528 original size:14 final size:13
Alignment explanation
Indices: 13821491--13821531 Score: 55
Period size: 14 Copynumber: 3.0 Consensus size: 13
13821481 CTATAATTTA
13821491 ATATTTATTGCATG
1 ATATTT-TTGCATG
*
13821505 ATATTATTGCATG
1 ATATTTTTGCATG
13821518 ATAATTTTTGCATG
1 AT-ATTTTTGCATG
13821532 GTATAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 9 0.38
14 15 0.62
ACGTcount: A:0.29, C:0.07, G:0.15, T:0.49
Consensus pattern (13 bp):
ATATTTTTGCATG
Found at i:13825369 original size:14 final size:13
Alignment explanation
Indices: 13825349--13825388 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
13825339 AAGAAATGTG
*
13825349 CAAAAAAAAAAAC
1 CAAAAAAAAAAAA
13825362 CAAAAAAAAAGAAA
1 CAAAAAAAAA-AAA
13825376 CAAAAAGAAAAAA
1 CAAAAA-AAAAAA
13825389 GACTTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 10 0.42
14 10 0.42
15 4 0.17
ACGTcount: A:0.85, C:0.10, G:0.05, T:0.00
Consensus pattern (13 bp):
CAAAAAAAAAAAA
Found at i:13826778 original size:48 final size:47
Alignment explanation
Indices: 13826726--13826942 Score: 170
Period size: 48 Copynumber: 4.5 Consensus size: 47
13826716 GTCTATTTTG
* * * *
13826726 TTTAAAATTTCAAGCTTTTGTCGAGAATAAGCTTTCATGAATGAAAAT
1 TTTAAAGTTTCAAGCCTTTGTTGA-AATAAGCTTTCATGGATGAAAAT
* ** * *
13826774 TTTAAAGTTTAAAGCCTTAATTGATAAGT-AGTTTTCCTGGATGAAAAT
1 TTTAAAGTTTCAAGCCTTTGTTGA-AA-TAAGCTTTCATGGATGAAAAT
* * * * *
13826822 ATTTAAATTTTTAAGCCTTTGTTGAAAAAGAGCTCTCTTGGATGAAAAT
1 -TTTAAAGTTTCAAGCCTTTGTTGAAATA-AGCTTTCATGGATGAAAAT
* ** *
13826871 TTTAAAGTTTCAAGCCTTTGTT-AAGATGAAACTTTC-TTAAGTGAGAAT
1 TTTAAAGTTTCAAGCCTTTGTTGAA-AT-AAGCTTTCATGGA-TGAAAAT
*
13826919 TTTAAAGTTTCAAGCCTTTATTGA
1 TTTAAAGTTTCAAGCCTTTGTTGA
13826943 GAAGGAGCTT
Statistics
Matches: 134, Mismatches: 27, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
47 4 0.03
48 91 0.68
49 39 0.29
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.40
Consensus pattern (47 bp):
TTTAAAGTTTCAAGCCTTTGTTGAAATAAGCTTTCATGGATGAAAAT
Found at i:13826838 original size:49 final size:48
Alignment explanation
Indices: 13826766--13826888 Score: 140
Period size: 49 Copynumber: 2.5 Consensus size: 48
13826756 GCTTTCATGA
* * *
13826766 ATGAAAATTTTAAAGTTTAAAGCCTTAATTG-ATAAGTAGTTTTCCTGG
1 ATGAAAATTTTAAAGTTTAAAGCCTTAATTGAAAAAG-AGCTCTCCTGG
* * ** *
13826814 ATGAAAATATTTAAATTTTTAAGCCTTTGTTGAAAAAGAGCTCTCTTGG
1 ATGAAAAT-TTTAAAGTTTAAAGCCTTAATTGAAAAAGAGCTCTCCTGG
*
13826863 ATGAAAATTTTAAAGTTTCAAGCCTT
1 ATGAAAATTTTAAAGTTTAAAGCCTT
13826889 TGTTAAGATG
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
48 24 0.38
49 35 0.56
50 4 0.06
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (48 bp):
ATGAAAATTTTAAAGTTTAAAGCCTTAATTGAAAAAGAGCTCTCCTGG
Found at i:13827055 original size:38 final size:38
Alignment explanation
Indices: 13826964--13827125 Score: 193
Period size: 38 Copynumber: 4.3 Consensus size: 38
13826954 TCTAGATATG
* *
13826964 ATTTTATTTTTCAAAAGTTGAAGCCTTGATGGGA-AGT
1 ATTTTATTTTTCAAAAGTTGAAGCCTCGATGGAAGAGT
*
13827001 ACTTTATTTTTCAAAAGTTGAAGCCTCGATGGAAGAGT
1 ATTTTATTTTTCAAAAGTTGAAGCCTCGATGGAAGAGT
* * * *
13827039 ATTTTATTTTTGAAAAGTCGAAGCCTC-AGTGGAGGAAT
1 ATTTTATTTTTCAAAAGTTGAAGCCTCGA-TGGAAGAGT
* * * * *
13827077 ATTCTATTTTTCAAAAGTTAAAGCCTTGGTGGAGGAGT
1 ATTTTATTTTTCAAAAGTTGAAGCCTCGATGGAAGAGT
13827115 ATTTTATTTTT
1 ATTTTATTTTT
13827126 TTCAAAGGTT
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
37 32 0.30
38 74 0.70
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (38 bp):
ATTTTATTTTTCAAAAGTTGAAGCCTCGATGGAAGAGT
Found at i:13827487 original size:5 final size:6
Alignment explanation
Indices: 13827409--13827502 Score: 97
Period size: 6 Copynumber: 16.3 Consensus size: 6
13827399 CCCGAAAATC
* * * *
13827409 TTAATC TTAATT TTAACT TTAATT TTAA-T TTGATT TTAATT TTGATT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
* * *
13827456 TTAGTT TTAATT TTAATT TTGATT TT-ATT TT-A-T TTAATT TTAGTT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
13827501 TT
1 TT
13827503 TGTTTAATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
4 3 0.04
5 11 0.15
6 60 0.81
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (6 bp):
TTAATT
Found at i:13827503 original size:17 final size:17
Alignment explanation
Indices: 13827409--13827513 Score: 88
Period size: 18 Copynumber: 6.1 Consensus size: 17
13827399 CCCGAAAATC
* *
13827409 TTAATCTTAATTTTAACT
1 TTAATTTTAA-TTTAATT
*
13827427 TTAATTTTAATTTGATT
1 TTAATTTTAATTTAATT
* *
13827444 TTAATTTTGATTTTAGTT
1 TTAATTTT-AATTTAATT
*
13827462 TTAATTTTAATTTTGATT
1 TTAATTTTAA-TTTAATT
13827480 TT-ATTTT-ATTTAATT
1 TTAATTTTAATTTAATT
* **
13827495 TTAGTTTTTGTTTAATT
1 TTAATTTTAATTTAATT
13827512 TT
1 TT
13827514 GGGTTAAAGT
Statistics
Matches: 71, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
15 8 0.11
16 5 0.07
17 28 0.39
18 30 0.42
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.67
Consensus pattern (17 bp):
TTAATTTTAATTTAATT
Found at i:13827508 original size:21 final size:21
Alignment explanation
Indices: 13827420--13827496 Score: 82
Period size: 23 Copynumber: 3.4 Consensus size: 21
13827410 TAATCTTAAT
* * *
13827420 TTTAACTTTAATTTTAATTTGA
1 TTTAATTTTGATTTT-ATTTTA
13827442 TTTTAATTTTGATTTTAGTTTTAA
1 -TTTAATTTTGATTTTA-TTTT-A
13827466 TTTTAATTTTGATTTTATTTTA
1 -TTTAATTTTGATTTTATTTTA
13827488 TTTAATTTT
1 TTTAATTTT
13827497 AGTTTTTGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
21 9 0.18
22 2 0.04
23 20 0.41
24 18 0.37
ACGTcount: A:0.26, C:0.01, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTAATTTTGATTTTATTTTA
Found at i:13827512 original size:27 final size:27
Alignment explanation
Indices: 13827409--13827513 Score: 92
Period size: 24 Copynumber: 3.9 Consensus size: 27
13827399 CCCGAAAATC
* *
13827409 TTAATCTTAATTTTAACTTTAATTTTAAT
1 TTAATTTTAATTTTGA-TTTAATTTT-AT
* **
13827438 TTGATTTTAATTTTGATTT--TAGT-T
1 TTAATTTTAATTTTGATTTAATTTTAT
*
13827462 TTAATTTTAATTTTGATTTTATTTTAT
1 TTAATTTTAATTTTGATTTAATTTTAT
*
13827489 TTAATTTTAGTTTTTG-TTTAATTTT
1 TTAATTTTA-ATTTTGATTTAATTTT
13827514 GGGTTAAAGT
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
24 19 0.31
26 4 0.06
27 18 0.29
28 8 0.13
29 13 0.21
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.67
Consensus pattern (27 bp):
TTAATTTTAATTTTGATTTAATTTTAT
Found at i:13828023 original size:23 final size:22
Alignment explanation
Indices: 13827972--13828023 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
13827962 CTTTTTCCTT
13827972 TTATTTTTTTATTTTGATTTTA
1 TTATTTTTTTATTTTGATTTTA
**
13827994 TCCTTTTTTTATTTTTTGA-TTTA
1 TTATTTTTTTA--TTTTGATTTTA
13828017 TTATTTT
1 TTATTTT
13828024 AATTATATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
22 9 0.38
23 9 0.38
24 6 0.25
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (22 bp):
TTATTTTTTTATTTTGATTTTA
Found at i:13828210 original size:24 final size:24
Alignment explanation
Indices: 13828157--13828256 Score: 121
Period size: 24 Copynumber: 4.0 Consensus size: 24
13828147 TTTGCATGAA
* *
13828157 TGCATTATTATTAATTTATTATAATAT
1 TGCATGATTATTAATATATT-T-AT-T
*
13828184 TGCATGATTATTAGTATATTTATT
1 TGCATGATTATTAATATATTTATT
13828208 TGCATGATTATTAATATATTTACTT
1 TGCATGATTATTAATATATTTA-TT
*
13828233 T-TATGATTATTAATATATTTATT
1 TGCATGATTATTAATATATTTATT
13828256 T
1 T
13828257 ATGTAATTGC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
23 3 0.04
24 41 0.61
25 5 0.07
26 1 0.01
27 17 0.25
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (24 bp):
TGCATGATTATTAATATATTTATT
Found at i:13828325 original size:24 final size:24
Alignment explanation
Indices: 13828298--13828358 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 24
13828288 ATTGCATGAC
13828298 ATGATTTTATATTTATTACAAGAT
1 ATGATTTTATATTTATTACAAGAT
* *
13828322 ATGA-TTT-TA--TATTGCATGAT
1 ATGATTTTATATTTATTACAAGAT
13828342 ATGATTTTATATTTATT
1 ATGATTTTATATTTATT
13828359 GTATGATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
20 13 0.42
21 3 0.10
22 4 0.13
23 3 0.10
24 8 0.26
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (24 bp):
ATGATTTTATATTTATTACAAGAT
Found at i:13828354 original size:20 final size:21
Alignment explanation
Indices: 13828282--13828351 Score: 79
Period size: 20 Copynumber: 3.2 Consensus size: 21
13828272 TATTAATATA
*
13828282 TTTATTATTGCATGACATGATT
1 TTTATTATTGCATGATATGA-T
* *
13828304 TTATATTTATTACAAGATATGAT
1 TT-TA-TTATTGCATGATATGAT
13828327 TTTA-TATTGCATGATATGAT
1 TTTATTATTGCATGATATGAT
13828347 TTTAT
1 TTTAT
13828352 ATTTATTGTA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
20 18 0.45
22 4 0.10
23 5 0.12
24 13 0.32
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.51
Consensus pattern (21 bp):
TTTATTATTGCATGATATGAT
Found at i:13828364 original size:24 final size:24
Alignment explanation
Indices: 13828286--13828378 Score: 104
Period size: 24 Copynumber: 4.0 Consensus size: 24
13828276 AATATATTTA
*
13828286 TTATTGCATGACATGATTTTATAT
1 TTATTGCATGATATGATTTTATAT
* *
13828310 TTATTACAAGATATGA-TTT-TA-
1 TTATTGCATGATATGATTTTATAT
13828331 -TATTGCATGATATGATTTTATAT
1 TTATTGCATGATATGATTTTATAT
* *
13828354 TTATTGTATGATATTATTATTATAT
1 TTATTGCATGATATGATT-TTATAT
13828379 GATAATTTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
20 13 0.23
21 3 0.05
22 4 0.07
23 3 0.05
24 28 0.49
25 6 0.11
ACGTcount: A:0.32, C:0.04, G:0.11, T:0.53
Consensus pattern (24 bp):
TTATTGCATGATATGATTTTATAT
Found at i:13829188 original size:56 final size:54
Alignment explanation
Indices: 13829126--13829388 Score: 215
Period size: 56 Copynumber: 4.7 Consensus size: 54
13829116 ATGGTAGAGT
** * * *
13829126 TAAACCTTTATGAAGCCAATTTATTGAGATGAGCTTTTTATCGAATATGACCAAGC
1 TAAACCTTTATGAAGGTAATTTACTAAGATGAGCTTTTTA-CG-ATATGGCCAAGC
* * * * *
13829182 TAAACCTTTAT-AGAGGTAATTTACCAAAATGAACTCTTTAAAAGATATGGCCAAGC
1 TAAACCTTTATGA-AGGTAATTTACTAAGATGAGCT-TTT-TACGATATGGCCAAGC
* * * *
13829238 TAAACATTTATGAAAGTAATTTACTGAGATGAGCCTTTTGACTGATATGGCCAAGC
1 TAAACCTTTATGAAGGTAATTTACTAAGATGAG-CTTTTTAC-GATATGGCCAAGC
* * * * * ***
13829294 TAAGCCTTTATGAAGGCAATTTACTAAGATGAACTATTTGATCGATGTGGTTGAGC
1 TAAACCTTTATGAAGGTAATTTACTAAGATGAGCT-TTTTA-CGATATGGCCAAGC
*
13829350 TAAACCTTTATGAAGGTAATTTA-TCAATATGAGCTTTTT
1 TAAACCTTTATGAAGGTAATTTACT-AAGATGAGCTTTTT
13829389 GGCCAAAGTG
Statistics
Matches: 165, Mismatches: 33, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
55 8 0.05
56 148 0.90
57 8 0.05
58 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (54 bp):
TAAACCTTTATGAAGGTAATTTACTAAGATGAGCTTTTTACGATATGGCCAAGC
Found at i:13829389 original size:112 final size:113
Alignment explanation
Indices: 13829114--13829389 Score: 285
Period size: 112 Copynumber: 2.5 Consensus size: 113
13829104 TCTTTAGCCA
* ** *
13829114 ATATGGTAGAGTTAAACCTTTATGAAGCCAATTTATTGAGATGAGCTTTTT-ATCGAATATGACC
1 ATATGGTAGAGCTAAACCTTTATGAAGGTAATTTATCGAGATGAGCTTTTTGATCGAATATGACC
* *
13829178 AAGCTAAACCTTTATAGAGGTAATTTACCAAAATGAACTCTTTAAAAG
66 AAGCTAAACCTTTATAGAGGCAATTTACCAAAATGAACTATTTAAAAG
* * * *
13829226 ATATGGCCA-AGCTAAACATTTATGAAAGTAATTTA-CTGAGATGAGCCTTTTGA-CTG-ATATG
1 ATATGG-TAGAGCTAAACCTTTATGAAGGTAATTTATC-GAGATGAGCTTTTTGATC-GAATATG
* * * * * **
13829287 GCCAAGCTAAGCCTTTAT-GAAGGCAATTTACTAAGATGAACTATTTGATCG
63 ACCAAGCTAAACCTTTATAG-AGGCAATTTACCAAAATGAACTATTTAAAAG
* * * *
13829338 ATGTGGTTGAGCTAAACCTTTATGAAGGTAATTTATCAATATGAGCTTTTTG
1 ATATGGTAGAGCTAAACCTTTATGAAGGTAATTTATCGAGATGAGCTTTTTG
13829390 GCCAAAGTGA
Statistics
Matches: 132, Mismatches: 25, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
111 1 0.01
112 127 0.96
113 4 0.03
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (113 bp):
ATATGGTAGAGCTAAACCTTTATGAAGGTAATTTATCGAGATGAGCTTTTTGATCGAATATGACC
AAGCTAAACCTTTATAGAGGCAATTTACCAAAATGAACTATTTAAAAG
Found at i:13829657 original size:27 final size:27
Alignment explanation
Indices: 13829619--13829673 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
13829609 TTTATCGAAA
13829619 TGAGCTCTTTGGCTAAGGTGATTGAGT
1 TGAGCTCTTTGGCTAAGGTGATTGAGT
13829646 TGAGCTCTTTGGCTAAGGTGATTGAGT
1 TGAGCTCTTTGGCTAAGGTGATTGAGT
13829673 T
1 T
13829674 TAGCCTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.11, G:0.33, T:0.38
Consensus pattern (27 bp):
TGAGCTCTTTGGCTAAGGTGATTGAGT
Found at i:13829786 original size:56 final size:56
Alignment explanation
Indices: 13829726--13829876 Score: 132
Period size: 56 Copynumber: 2.7 Consensus size: 56
13829716 TAGGTGGCCA
13829726 AGCTAAGCATTTATAAAGGCATTTTGCTGAGATAAGCTCTTTAGCCAATATGGTCG
1 AGCTAAGCATTTATAAAGGCATTTTGCTGAGATAAGCTCTTTAGCCAATATGGTCG
* * * * * *
13829782 AGCTAAGCTTTTATGAAA-GCA-ATT-CATGAAAATGAA-CTCTTTGGCCAATGTGGTTG
1 AGCTAAGCATTTAT-AAAGGCATTTTGC-TG-AGAT-AAGCTCTTTAGCCAATATGGTCG
* ** *
13829838 AACTAAGCCCTTATAAAGGCATTTTG-TCGAGATGAGCTC
1 AGCTAAGCATTTATAAAGGCATTTTGCT-GAGATAAGCTC
13829877 CTTGACCGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 18
0.71 0.12 0.17
Matches are distributed among these distances:
54 1 0.01
55 8 0.11
56 57 0.77
57 8 0.11
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (56 bp):
AGCTAAGCATTTATAAAGGCATTTTGCTGAGATAAGCTCTTTAGCCAATATGGTCG
Found at i:13830557 original size:84 final size:83
Alignment explanation
Indices: 13830423--13830580 Score: 228
Period size: 84 Copynumber: 1.9 Consensus size: 83
13830413 TAGATCTGAG
* * * *
13830423 CTCTTTGATCGAGCTAAGTTAAGCTTTTTGGTTGAGCTACTTTGTCGAATT-AGGCCTTTATGAA
1 CTCTTTGATCAAGCTAAGTTAAGCTTTTTAGTTGAGCTACTTTATCGAATTGA-GCCATTATGAA
13830487 AGTGATATGTGGATTCGAA
65 AGTGATATGTGGATTCGAA
* *
13830506 CTCTTTGATTAAGCTAAGTTCAAGCTTTTTAGTTGAGCTGCTTTATCGAATTGAGCCATTATGAA
1 CTCTTTGATCAAGCTAAGTT-AAGCTTTTTAGTTGAGCTACTTTATCGAATTGAGCCATTATGAA
*
13830571 GGTGATATGT
65 AGTGATATGT
13830581 AGATATGAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
83 18 0.27
84 47 0.71
85 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.39
Consensus pattern (83 bp):
CTCTTTGATCAAGCTAAGTTAAGCTTTTTAGTTGAGCTACTTTATCGAATTGAGCCATTATGAAA
GTGATATGTGGATTCGAA
Found at i:13831519 original size:3 final size:3
Alignment explanation
Indices: 13831511--13831549 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
13831501 TTTATATTCA
13831511 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
13831550 CGGTTTAAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:13832104 original size:3 final size:3
Alignment explanation
Indices: 13832096--13832127 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
13832086 TGAATTGTTT
13832096 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
13832128 GTTGCTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:13832398 original size:23 final size:23
Alignment explanation
Indices: 13832372--13832418 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
13832362 CATTTAGATG
* * *
13832372 TAAAAAAATATTGAATGAATGAA
1 TAAAAAAATAATAAATAAATGAA
*
13832395 TAAATAAATAATAAATAAATGAA
1 TAAAAAAATAATAAATAAATGAA
13832418 T
1 T
13832419 GAGCATCAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.28
Consensus pattern (23 bp):
TAAAAAAATAATAAATAAATGAA
Found at i:13843685 original size:6 final size:6
Alignment explanation
Indices: 13843674--13843699 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
13843664 AAGAGTTTTA
13843674 ATAATT ATAATT ATAATT ATAATT AT
1 ATAATT ATAATT ATAATT ATAATT AT
13843700 TACATTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:13853557 original size:2 final size:2
Alignment explanation
Indices: 13853550--13853578 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13853540 TTACTACATG
13853550 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13853579 TTCACTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13853841 original size:20 final size:20
Alignment explanation
Indices: 13853818--13853858 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
13853808 AGTGATATGA
13853818 ACATTGATTTTATTGACGTG
1 ACATTGATTTTATTGACGTG
*
13853838 ACATTGATTTTATTGATGTG
1 ACATTGATTTTATTGACGTG
13853858 A
1 A
13853859 TATTAACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (20 bp):
ACATTGATTTTATTGACGTG
Found at i:13854964 original size:16 final size:14
Alignment explanation
Indices: 13854929--13854970 Score: 52
Period size: 13 Copynumber: 3.0 Consensus size: 14
13854919 AATTTTGATA
13854929 TATTAAT-TTAAAT
1 TATTAATATTAAAT
13854942 TATTAATATTATAAT
1 TATTAATATTA-AAT
13854957 TGATTAATA-TAAAT
1 T-ATTAATATTAAAT
13854971 GACAACAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.27
14 6 0.23
15 6 0.23
16 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
TATTAATATTAAAT
Found at i:13861417 original size:26 final size:25
Alignment explanation
Indices: 13861383--13861433 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
13861373 AAATTAAGTA
13861383 AAATTAATATAT-TTATATTAAAAAAT
1 AAATTAATATATATT-TA-TAAAAAAT
13861409 AAATTAATATATATTTATAAAAAAT
1 AAATTAATATATATTTATAAAAAAT
13861434 TACCTATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.33
26 14 0.58
27 2 0.08
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (25 bp):
AAATTAATATATATTTATAAAAAAT
Found at i:13867768 original size:8 final size:8
Alignment explanation
Indices: 13867734--13867761 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
13867724 GATTAATGTC
13867734 AAAAGAAA
1 AAAAGAAA
13867742 AAAAGAAA
1 AAAAGAAA
13867750 AAAAGAAA
1 AAAAGAAA
13867758 AAAA
1 AAAA
13867762 AACAAAATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:13869655 original size:22 final size:21
Alignment explanation
Indices: 13869623--13869665 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
13869613 TTTAAAATAA
*
13869623 CAAAAATTTAAAAAATATATT
1 CAAAAATTTAAAAAAAATATT
13869644 CAAAAATCTTAAAAAAAATATT
1 CAAAAAT-TTAAAAAAAATATT
13869666 TACCTCAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (21 bp):
CAAAAATTTAAAAAAAATATT
Found at i:13874312 original size:22 final size:23
Alignment explanation
Indices: 13874277--13874339 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 23
13874267 AATAAAAATA
*
13874277 ATATATAAAATATTA-ATT-CAA-
1 ATATAT-ATATATTATATTACAAG
13874298 ATCATATATAGTATTATATTACAAG
1 AT-ATATATA-TATTATATTACAAG
13874323 ATATATATATATT-TATT
1 ATATATATATATTATATT
13874340 TATATATTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
21 4 0.11
22 13 0.36
23 7 0.19
24 10 0.28
25 2 0.06
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (23 bp):
ATATATATATATTATATTACAAG
Found at i:13876114 original size:16 final size:16
Alignment explanation
Indices: 13876095--13876128 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13876085 AAAAGTCTAT
13876095 TTGTAACAACAAATAG
1 TTGTAACAACAAATAG
* *
13876111 TTGTAATATCAAATAG
1 TTGTAACAACAAATAG
13876127 TT
1 TT
13876129 CGTAGAAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (16 bp):
TTGTAACAACAAATAG
Found at i:13878912 original size:50 final size:48
Alignment explanation
Indices: 13878851--13878978 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 48
13878841 GAATATAACG
* *
13878851 GGATAGGAATGAAAAATTAAAAGGTCATAT-GAGAGAAGCGAGATGACAA
1 GGATAGGAATGAAAAATTAAAAGGTCATATAAAG-GAAGAGAGATGA-AA
* *
13878900 GGATAGGGAATGAAAAATT-AATGCATC-TAATAAAGGAAGAGAGATGAAA
1 GGATA-GGAATGAAAAATTAAAAG-GTCAT-ATAAAGGAAGAGAGATGAAA
**
13878949 GGATAAAAATGAAAAATTAAAAGGTCATAT
1 GGATAGGAATGAAAAATTAAAAGGTCATAT
13878979 TACGAATATA
Statistics
Matches: 65, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
48 15 0.23
49 20 0.31
50 28 0.43
51 2 0.03
ACGTcount: A:0.52, C:0.05, G:0.25, T:0.19
Consensus pattern (48 bp):
GGATAGGAATGAAAAATTAAAAGGTCATATAAAGGAAGAGAGATGAAA
Found at i:13882202 original size:21 final size:22
Alignment explanation
Indices: 13882172--13882213 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
13882162 TTTTATATAT
13882172 TATAAATTTTAAAAAT-TTAAA
1 TATAAATTTTAAAAATATTAAA
*
13882193 TATAATTTTTAAAAATATTAA
1 TATAAATTTTAAAAATATTAA
13882214 TTTATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TATAAATTTTAAAAATATTAAA
Found at i:13886646 original size:53 final size:53
Alignment explanation
Indices: 13886571--13886685 Score: 178
Period size: 53 Copynumber: 2.2 Consensus size: 53
13886561 TTCCAGCAGG
* * * *
13886571 TATTAAACTCGTGTTTTTTTGGGTAGGATTCTCCAGTAACTATTGTATTTTTC
1 TATTAAACTCCTGGTTTCTTGGGTAGGATTCTCCAGTAACTATTGTATTCTTC
13886624 TATTAAACTCCTGGTTTCTTGGGTAGGATTCTCCAGTAACTATTGTATTCTTC
1 TATTAAACTCCTGGTTTCTTGGGTAGGATTCTCCAGTAACTATTGTATTCTTC
*
13886677 T-CTAAACTC
1 TATTAAACTC
13886686 TTTTTATTGT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 7 0.12
53 50 0.88
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (53 bp):
TATTAAACTCCTGGTTTCTTGGGTAGGATTCTCCAGTAACTATTGTATTCTTC
Found at i:13892228 original size:2 final size:2
Alignment explanation
Indices: 13892221--13892251 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13892211 ATTTGAGATA
13892221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13892252 AAAGCTAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13893258 original size:23 final size:24
Alignment explanation
Indices: 13893228--13893273 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
13893218 AATCTATTTT
13893228 TTAAAATA-ATATTAATATAAATA
1 TTAAAATATATATTAATATAAATA
13893251 TTAAAATATTATATTAATATAAA
1 TTAAAATA-TATATTAATATAAA
13893274 AAATACTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.38
25 13 0.62
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
TTAAAATATATATTAATATAAATA
Found at i:13893260 original size:20 final size:21
Alignment explanation
Indices: 13893229--13893289 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 21
13893219 ATCTATTTTT
13893229 TAAAATAATATTAATATAAATA
1 TAAAA-AATATTAATATAAATA
* *
13893251 T-TAAAATATT-ATATTAATA
1 TAAAAAATATTAATATAAATA
*
13893270 TAAAAAATACTTAAAATAAA
1 TAAAAAATA-TTAATATAAA
13893290 CCTATTTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 9 0.29
20 12 0.39
21 4 0.13
22 6 0.19
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAAAATATTAATATAAATA
Found at i:13893324 original size:15 final size:15
Alignment explanation
Indices: 13893305--13893566 Score: 149
Period size: 15 Copynumber: 17.1 Consensus size: 15
13893295 TTATTATTTT
13893305 TATATTATTTATTAA
1 TATATTATTTATTAA
* *
13893320 CATATTATTAATTAA
1 TATATTATTTATTAA
13893335 TATAATCATATTTATTAA
1 TAT-AT--TATTTATTAA
13893353 TATATTA-TTATT--
1 TATATTATTTATTAA
* *
13893365 TCT-TTATTAATATACA
1 TATATTATTTAT-TA-A
*
13893381 T-TATTTATTAATAGATAA
1 TATA-TTATT--TA-TTAA
13893399 TAATATTATTTATTAA
1 T-ATATTATTTATTAA
*
13893415 TATATTATATTAATAA
1 TATATTAT-TTATTAA
13893431 TATATTATTTATTAATA
1 TATATTATTTATT-A-A
*
13893448 TAATATTATTTTTTAA
1 T-ATATTATTTATTAA
13893464 TATATTATAATT-TT-A
1 TATATTAT--TTATTAA
*
13893479 TATATTAATATTAATAA
1 TATATT-AT-TTATTAA
13893496 TATATTATTTACTAATAA
1 TATATTATTTA-T--TAA
13893514 TATATTATTT-TT-A
1 TATATTATTTATTAA
13893527 -ATA-TA-TTA-T-A
1 TATATTATTTATTAA
13893537 -ATATTATTTATTAA
1 TATATTATTTATTAA
*
13893551 TATTTTATTTATTAA
1 TATATTATTTATTAA
13893566 T
1 T
13893567 TAATATAATA
Statistics
Matches: 199, Mismatches: 15, Indels: 66
0.71 0.05 0.24
Matches are distributed among these distances:
10 7 0.04
11 7 0.04
12 11 0.06
13 3 0.02
14 7 0.04
15 63 0.32
16 32 0.16
17 21 0.11
18 38 0.19
19 8 0.04
20 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
TATATTATTTATTAA
Found at i:13893328 original size:18 final size:18
Alignment explanation
Indices: 13893307--13893583 Score: 172
Period size: 18 Copynumber: 15.5 Consensus size: 18
13893297 ATTATTTTTA
*
13893307 TATTATTTATTAACATAT
1 TATTATTTATTAATATAT
13893325 TATTA---ATTAATATAAT
1 TATTATTTATTAATAT-AT
*
13893341 CA-TATTTATTAATATAT
1 TATTATTTATTAATATAT
13893358 TATTATTTCTTTATTAATATA-
1 TATTA----TTTATTAATATAT
*
13893379 CATTATTTATTAATAGATAAT
1 TATTATTTATTAAT--AT-AT
13893400 AATATTATTTATTAATATAT
1 --TATTATTTATTAATATAT
*
13893420 TA-TA-TTAAT-A-ATA-
1 TATTATTTATTAATATAT
*
13893433 TATTATTTATTAATATAA
1 TATTATTTATTAATATAT
*
13893451 TATTATTTTTTAATATAT
1 TATTATTTATTAATATAT
*
13893469 TA-TAATT-TT-ATATAT
1 TATTATTTATTAATATAT
* *
13893484 TAATA-TTAATAATATAT
1 TATTATTTATTAATATAT
* *
13893501 TATT-TACTAATAATATAT
1 TATTAT-TTATTAATATAT
* *
13893519 TATT-TTTAATATATTATAA
1 TATTATTT-AT-TAATATAT
*
13893538 TATTATTTATTAATATTT
1 TATTATTTATTAATATAT
* *
13893556 TATTTATTAATTAATATAA
1 TA-TTATTTATTAATATAT
13893575 TATTATTTA
1 TATTATTTA
13893584 CAATTAAAAT
Statistics
Matches: 206, Mismatches: 24, Indels: 58
0.72 0.08 0.20
Matches are distributed among these distances:
13 2 0.01
14 5 0.02
15 24 0.12
16 13 0.06
17 31 0.15
18 65 0.32
19 29 0.14
20 6 0.03
21 6 0.03
22 12 0.06
23 13 0.06
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TATTATTTATTAATATAT
Found at i:13893370 original size:22 final size:21
Alignment explanation
Indices: 13893345--13893386 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
13893335 TATAATCATA
*
13893345 TTTATTAATATATTATTATTTC
1 TTTATTAATATA-CATTATTTC
13893367 TTTATTAATATACATTATTT
1 TTTATTAATATACATTATTT
13893387 ATTAATAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATTAATATACATTATTTC
Found at i:13893555 original size:32 final size:32
Alignment explanation
Indices: 13893457--13893556 Score: 103
Period size: 32 Copynumber: 3.1 Consensus size: 32
13893447 ATAATATTAT
* *
13893457 TTTTTAATATATTATAATTTTATATATTAATA
1 TTTTTAATATATTATAATATTATTTATTAATA
** * * * * *
13893489 TTAATAATATATTAT-TTACTAATAATATATTA
1 TTTTTAATATATTATAATATTATTTAT-TAATA
13893521 TTTTTAATATATTATAATATTATTTATTAATA
1 TTTTTAATATATTATAATATTATTTATTAATA
13893553 TTTT
1 TTTT
13893557 ATTTATTAAT
Statistics
Matches: 50, Mismatches: 16, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
31 5 0.10
32 38 0.76
33 7 0.14
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (32 bp):
TTTTTAATATATTATAATATTATTTATTAATA
Found at i:13893559 original size:37 final size:39
Alignment explanation
Indices: 13893324--13893584 Score: 163
Period size: 40 Copynumber: 6.7 Consensus size: 39
13893314 TATTAACATA
*
13893324 TTATTAATTAATATAATCA-TATTTATTA-ATATATTATTAT
1 TTATTAATTAATATAAT-ATTATTTACTATA-ATA-TATTAT
* * * * *
13893364 TTCTTTATTAATAT-ACATTATTTATTAATAGATA-ATAAT
1 TTATTAATTAATATAATATTATTTACT-ATA-ATATATTAT
* *
13893403 ATTATTTATTAATATATTA-TA-TTA--ATAATATATTAT
1 -TTATTAATTAATATAATATTATTTACTATAATATATTAT
* * *
13893439 TTATTAATATAATAT--TATTTTTTAATATATTATAATTTTAT
1 TTATTAAT-TAATATAATATTATTTACTATA--AT-ATATTAT
*
13893480 ATATTAATATTAATA-ATATATTATTTACTAATAATATATTAT
1 TTATT-A-ATTAATATA-ATATTATTTACT-ATAATATATTAT
* *
13893522 TT-TTAATATATTATAATATTATTTA-T-TAATATTTTAT
1 TTATTAAT-TAATATAATATTATTTACTATAATATATTAT
13893559 TTATTAATTAATATAATATTATTTAC
1 TTATTAATTAATATAATATTATTTAC
13893585 AATTAAAATT
Statistics
Matches: 177, Mismatches: 20, Indels: 50
0.72 0.08 0.20
Matches are distributed among these distances:
34 2 0.01
35 11 0.06
36 16 0.09
37 28 0.16
38 9 0.05
39 19 0.11
40 45 0.25
41 18 0.10
42 13 0.07
43 4 0.02
44 9 0.05
45 3 0.02
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (39 bp):
TTATTAATTAATATAATATTATTTACTATAATATATTAT
Found at i:13895490 original size:167 final size:168
Alignment explanation
Indices: 13895188--13895490 Score: 403
Period size: 167 Copynumber: 1.8 Consensus size: 168
13895178 AAATGAATAT
* * *
13895188 TTTTTTTGGTTCTCATAGACAATGTGATAACATGAATTATTTAAGCATTTGGGCTTAAGAAATGC
1 TTTTTTT-GTTCTCATAGACAATGTGATAACATGAAATATTTAAGCATTTAGGCTTAAGAAAAGC
* * * ** * * * *
13895253 CATAATTGATGATCATTTAAGGCATTTTTGTACATAAATGTCTTAAATGATCCTTAATTATGGTG
65 CATAATTGATGATCATTTAAGGCATTTTTGTACACAAAAGCCTTAAACAATCATCAATTATAGCG
13895318 TTTGGTGCTTAAAACACCTTAAATAATGCTTGGTTTTGA
130 TTTGGTGCTTAAAACACCTTAAATAATGCTTGGTTTTGA
* * ** *
13895357 TTTTTTT-TTCTCATAGACAATGTTATAATATGAAATATTTAAGGTGTTTAGGTTTAA-AAAAGC
1 TTTTTTTGTTCTCATAGACAATGTGATAACATGAAATATTTAA-GCATTTAGGCTTAAGAAAAGC
* *
13895420 TATAATTGATGATCATTTAAGGCATTTTTGTACACAAAAGCCTTGAACAATCATCAATTATAGCG
65 CATAATTGATGATCATTTAAGGCATTTTTGTACACAAAAGCCTTAAACAATCATCAATTATAGCG
13895485 TTTGGT
130 TTTGGT
13895491 TCTCAAAATG
Statistics
Matches: 114, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
167 97 0.85
168 10 0.09
169 7 0.06
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (168 bp):
TTTTTTTGTTCTCATAGACAATGTGATAACATGAAATATTTAAGCATTTAGGCTTAAGAAAAGCC
ATAATTGATGATCATTTAAGGCATTTTTGTACACAAAAGCCTTAAACAATCATCAATTATAGCGT
TTGGTGCTTAAAACACCTTAAATAATGCTTGGTTTTGA
Found at i:13896396 original size:95 final size:96
Alignment explanation
Indices: 13896290--13896485 Score: 315
Period size: 95 Copynumber: 2.1 Consensus size: 96
13896280 TTATTTTTTT
* * * *
13896290 AAATTTAGATTATCTCG-ACTTACCGGTGAAATCTAAATATTAATTTTTTATTTGAAGAAAATTG
1 AAATTTAGATTATC-CGAACTCACCGGTGAAATCTAAATATTAATCTCTTATTTGAAGAAAATCG
13896354 AACTCTTTCAATTTTCTATAT-TTTTTTAAAA
65 AACTCTTTCAATTTTCTATATATTTTTTAAAA
13896385 AAATTTAGATTATCCGAACTCACCGGTGAAATCTAAATATTAATCTCTTATTTGAAGAAAATCGA
1 AAATTTAGATTATCCGAACTCACCGGTGAAATCTAAATATTAATCTCTTATTTGAAGAAAATCGA
* *
13896450 ACTCTTTCAATTTTTTATATATTTTTTTAAA
66 ACTCTTTCAATTTTCTATATATTTTTTAAAA
13896481 AAATT
1 AAATT
13896486 CAAGATATCA
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
94 2 0.02
95 77 0.83
96 14 0.15
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (96 bp):
AAATTTAGATTATCCGAACTCACCGGTGAAATCTAAATATTAATCTCTTATTTGAAGAAAATCGA
ACTCTTTCAATTTTCTATATATTTTTTAAAA
Found at i:13896865 original size:16 final size:14
Alignment explanation
Indices: 13896835--13896896 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 14
13896825 TACTATTAAA
13896835 TTTTTTA-TTTATAT
1 TTTTTTAGTTT-TAT
13896849 TTTTTTAGGTCTTTAT
1 TTTTTTA-GT-TTTAT
13896865 TTTATTTCAGTTTTAT
1 TTT-TTT-AGTTTTAT
13896881 TTTTTTA-TATTTAT
1 TTTTTTAGT-TTTAT
13896895 TT
1 TT
13896897 ATTGATCTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 1 0.02
14 15 0.36
15 3 0.07
16 15 0.36
17 7 0.17
18 1 0.02
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (14 bp):
TTTTTTAGTTTTAT
Found at i:13896993 original size:26 final size:26
Alignment explanation
Indices: 13896964--13897022 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
13896954 TAACATCTTT
*
13896964 AAAAAAATAACATA-AAAATCAACAT-
1 AAAAAAATAA-ATACAAAATCAAAATG
13896989 AAAAAAATAAATATCAAAATCAAAATG
1 AAAAAAATAAATA-CAAAATCAAAATG
13897016 AAAAAAA
1 AAAAAAA
13897023 AAAAAGGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 3 0.10
25 10 0.33
26 10 0.33
27 7 0.23
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.15
Consensus pattern (26 bp):
AAAAAAATAAATACAAAATCAAAATG
Done.