Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 79 of 129
Found at i:14876595 original size:181 final size:181
Alignment explanation
Indices: 14876191--14876871 Score: 411
Period size: 181 Copynumber: 3.8 Consensus size: 181
14876181 TACTATTAAA
* * * *
14876191 ACTAATTTATTAATACTTCAAAAAATT-AT----AAGAGATTTAAAAAAT-AATTCTATTTACCA
1 ACTAATTTAATAATA-TTCAAAAAATTAATAACCAAGAAAATTAAAAAATAAATT-TGTTTACCA
* * * * *
14876250 AACCAGTTCAAATAATTATAACTATTTGCACAATTATTTATTTCAAATCATTATTACTTTTTGTT
64 AACCAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTATT
* * *
14876315 TTGTCATAAAACAATTGTTTTTGTTAAGATAAGTTTGTTCAAAATAAAATAAC
129 TTGTCATAAAACAATTGGTTCTGTTAAGATAAGTTTATTCAAAATAAAATAAC
* * ** * * *
14876368 ACTAATTTATTAATATTCAAAAAATTAATTAGTAAGAGATTTAAAAAGTAAATTTGTTTACCAAA
1 ACTAATTTAATAATATTCAAAAAATTAATAACCAAGAAAATTAAAAAATAAATTTGTTTACCAAA
* * * * * * **
14876433 CCATTTCAAATAGTTTTGACTATTTGAATACTTATCTATTTCAAATTGTTATAACCTTTTATTTT
66 CCAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTATTTT
* * * * * * *
14876498 GTTATTAAACAATTGGTTCTGTTCATGCT-ATTTTATTCAGAATAAAATAAT
131 GTCATAAAACAATTGGTTCTGTT-AAGATAAGTTTATTCAAAATAAAATAAC
* * * ** ****
14876549 ATTAATTTAATAATATTTC-AAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAATTGTTGA
1 ACTAATTTAATAATA-TTCAAAAAATTAATAACCAAGAAAATTAAAAAATAAATTTGTTTACCAA
* * * ** * ** * * *
14876613 ACCAATTAAAATAGTTACGA-TGATATGAATGATTATCTATTTTAAATCGA-TATGACCTTTTCT
65 ACCAGTTCAAATAATTATAACT-ATTTGAACAATTATCTATTTCAAATC-ATTATAACCTTTTAT
* * * * * * *** * * *
14876676 TTTGTCGTAAAACAATT-ATTTTGTT-CGTACAAGCTTATTTTGATTAGAATAAT
128 TTTGTCATAAAACAATTGGTTCTGTTAAG-ATAAGTTTATTCAAAATAAAATAAC
** ** * * *
14876729 ACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAAATTTAAAAATTAAATTTGTTTA-CGAA
1 ACTAATTTAATAATATTCAAAAAATTAATAACCAAGAAAATTAAAAAATAAATTTGTTTACCAAA
** ** ** * * * * *
14876793 TTAGTTCAAATGGTTA-AGACTATTAAAACAGTTATCTATTTAAAATCGTTCTGACCTTTT-TTT
66 CCAGTTCAAATAATTATA-ACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTATTT
*
14876856 TAGTCATAAAAAAATT
130 T-GTCATAAAACAATT
14876872 ATTCTAGTTC
Statistics
Matches: 391, Mismatches: 96, Indels: 32
0.75 0.18 0.06
Matches are distributed among these distances:
176 11 0.03
177 17 0.04
178 5 0.01
179 58 0.15
180 70 0.18
181 220 0.56
182 10 0.03
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (181 bp):
ACTAATTTAATAATATTCAAAAAATTAATAACCAAGAAAATTAAAAAATAAATTTGTTTACCAAA
CCAGTTCAAATAATTATAACTATTTGAACAATTATCTATTTCAAATCATTATAACCTTTTATTTT
GTCATAAAACAATTGGTTCTGTTAAGATAAGTTTATTCAAAATAAAATAAC
Found at i:14878393 original size:182 final size:178
Alignment explanation
Indices: 14878141--14878726 Score: 609
Period size: 182 Copynumber: 3.2 Consensus size: 178
14878131 AAACAATTGG
* * *
14878141 TTTTGAAACATTAATAAATTTA-TATTATTTTATTTGAAATAAGCTTGAATGAATAG-AACTAAT
1 TTTTGAAATATTAATAAA-TTAGTATTATTTTA-TTCAAATAAGC-TAAATGAATAGAAAC-AAT
* * *
14878204 TGTTTTATGACAAAACAAAAGGTCGTAATGTTTTGAAATAGATAATTATTAAGATAGTCATAACT
62 TGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTATTAAGATAGTCATAACT
* * *
14878269 ATTTGAACTTGTTTGATAAACATATTTATTTTTTTAATTCTCTTACTTTTTAAT
127 ATTTGAATTTGTTTGATAAACA-ATTTATTTTTTAAATTCT-TTACTTATTAAT
* *
14878323 TTTTGGAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTG
1 TTTTGAAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTAA-ATGAATAGAAACAATTG
* * * * * *
14878388 TTTTATTACAAAACAAAATGTTACAATGATTTGAAGTAGATAATTATTCAA-ATAGTCATTACTA
64 TTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTATT-AAGATAGTCATAACTA
* *
14878452 TTTGAATTTGTTTGGT-AAC---TTATTTTTTAAAATCTTTTACTTATTAAT
128 TTTGAATTTGTTTGATAAACAATTTATTTTTTAAATTC-TTTACTTATTAAT
* * * * ** * * * *
14878500 TGTTGAAATATTAATAAATCAATATTATTTTATTCTGAATAAGCTCGTACGGATGGAAACAATTA
1 TTTTGAAATATTAATAAATTAGTATTATTTTATTC-AAATAAGCT-AAATGAATAGAAACAATTG
* *
14878565 TTTTATGACAAAACAAAAAAGTCATAA-GAATTTGAAATAAATAATTATTTAGATAGTCATAA-T
64 TTTTATGACAAAAC-AAAAAGTCATAATG-ATTTGAAATAGATAATTATTAAGATAGTCATAACT
*
14878628 GATTTGAATTTGTTTGATAAATAGATTTATTTTTTAAATAT-TTTACTTATTAAT
127 -ATTTGAATTTGTTTGATAAACA-ATTTATTTTTTAAAT-TCTTTACTTATTAAT
* * *
14878682 TTTCT-TAATATTAATAAGTTTGTATTATTTTATTCAAAGTAAGCT
1 TTT-TGAAATATTAATAAATTAGTATTATTTTATTCAAA-TAAGCT
14878727 TATATGAACA
Statistics
Matches: 338, Mismatches: 47, Indels: 38
0.80 0.11 0.09
Matches are distributed among these distances:
176 3 0.01
177 89 0.26
178 53 0.16
179 2 0.01
181 10 0.03
182 162 0.48
183 18 0.05
184 1 0.00
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (178 bp):
TTTTGAAATATTAATAAATTAGTATTATTTTATTCAAATAAGCTAAATGAATAGAAACAATTGTT
TTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTATTAAGATAGTCATAACTATTT
GAATTTGTTTGATAAACAATTTATTTTTTAAATTCTTTACTTATTAAT
Found at i:14878824 original size:359 final size:359
Alignment explanation
Indices: 14878143--14878828 Score: 798
Period size: 359 Copynumber: 1.9 Consensus size: 359
14878133 ACAATTGGTT
** * * *
14878143 TTGAAACATTAATAAATTTATATTATTTTATTTGAAATAAGCTTGAATGAATAGAACTAATTGTT
1 TTGAAACATTAATAAATCAATATTATTTTATTTGAAATAAGCTCGAACGAATAGAACTAATTATT
* * * *
14878208 TTATGACAAAACAAAAGGTCGTAATGTTTTGAAATAGATAATTATTAAGATAGTCATAACTATTT
66 TTATGACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTATTAAGATAGTCATAACTATTT
* * *
14878273 GAACTTGTTTGATAAACATATTTATTTTTTTAATTCTCTTACTTTTTAATTTTTGGAATATTAAT
131 GAACTTGTTTGATAAACAGATTTATTTTTTAAATTCTCTTACTTATTAATTTTTGGAATATTAAT
** * ** * *
14878338 AAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTACAAAACA
196 AAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATCAAAAAAATCATTATATGACAAAACA
* * ** * * * * *
14878403 AAATGTTACAATGATTTGAAGTAGATAATTATTCAAATAGTCATTACTATTTGAATTTGTTTGGT
261 AAAGGTTACAACGATTCCAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTTGTTTGGT
14878468 AACTTATTTTTTAAAATCTTTTACTTATTAATTG
326 AACTTATTTTTTAAAATCTTTTACTTATTAATTG
* * * *
14878502 TTGAAATATTAATAAATCAATATTATTTTATTCTG-AATAAGCTCGTACGGATGGAAAC-AATTA
1 TTGAAACATTAATAAATCAATATTATTTTATT-TGAAATAAGCTCGAACGAATAG-AACTAATTA
*
14878565 TTTTATGACAAAACAAAAAAGTCATAA-GAATTTGAAATAAATAATTATTTAGATAGTCATAA-T
64 TTTTATGACAAAAC-AAAAAGTCATAATG-ATTTGAAATAAATAATTATTAAGATAGTCATAACT
* * *
14878628 GATTTGAATTTGTTTGATAAATAGATTTATTTTTTAAATAT-T-TTACTTATTAATTTTCT-TAA
127 -ATTTGAACTTGTTTGATAAACAGATTTATTTTTTAAAT-TCTCTTACTTATTAATTTT-TGGAA
* * * *
14878690 TATTAATAAGTTTGTATTATTTTA-TTCAAAGTAAGCTTATATGAA-CAAATAAAATCATTATAT
189 TATTAATAAATTAGTATTATTTTATTTCAAA-TAAGCTAACATGAATCAAA-AAAATCATTATAT
* * * * * *
14878753 GACAAACCAAAAGGTTATAGCGATTCCAAATCA-ATAATTGTTCAAATGGCCATAATTATTTAAA
252 GACAAAACAAAAGGTTACAACGATTCCAAAT-AGATAATTATTCAAATAGCCATAACTATTTAAA
14878817 CTTGTTTGGTAA
316 CTTGTTTGGTAA
14878829 ATAATACTAA
Statistics
Matches: 271, Mismatches: 46, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
358 8 0.03
359 180 0.66
360 82 0.30
361 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (359 bp):
TTGAAACATTAATAAATCAATATTATTTTATTTGAAATAAGCTCGAACGAATAGAACTAATTATT
TTATGACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTATTAAGATAGTCATAACTATTT
GAACTTGTTTGATAAACAGATTTATTTTTTAAATTCTCTTACTTATTAATTTTTGGAATATTAAT
AAATTAGTATTATTTTATTTCAAATAAGCTAACATGAATCAAAAAAATCATTATATGACAAAACA
AAAGGTTACAACGATTCCAAATAGATAATTATTCAAATAGCCATAACTATTTAAACTTGTTTGGT
AACTTATTTTTTAAAATCTTTTACTTATTAATTG
Found at i:14879212 original size:16 final size:16
Alignment explanation
Indices: 14879193--14879267 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 16
14879183 ATTTTAATTA
*
14879193 ATTAATATATATTATT
1 ATTAATATATAATATT
*
14879209 ATTAATTAAAATAATATT
1 ATTAA-T-ATATAATATT
14879227 -TATAAT-TACTAATATT
1 AT-TAATATA-TAATATT
* *
14879243 ATTAATATATATTATC
1 ATTAATATATAATATT
14879259 ATT-ATATAT
1 ATTAATATAT
14879268 TAGGCTAGTT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
15 7 0.15
16 24 0.50
17 6 0.12
18 11 0.23
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTAATATATAATATT
Found at i:14879232 original size:18 final size:19
Alignment explanation
Indices: 14879179--14879245 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
14879169 ATAAAATTTT
14879179 TAATATTT-TAATTAATTAA
1 TAATATTTATAATTAA-TAA
14879198 TATATATTATTATTAATTAA-AA
1 TA-ATA-T-TTA-TAATTAATAA
*
14879220 TAATATTTATAATTACTAA
1 TAATATTTATAATTAATAA
*
14879239 TATTATT
1 TAATATT
14879246 AATATATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
18 6 0.15
19 13 0.32
20 4 0.10
21 4 0.10
22 6 0.15
24 7 0.17
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATTTATAATTAATAA
Found at i:14879234 original size:25 final size:24
Alignment explanation
Indices: 14879186--14879254 Score: 66
Period size: 25 Copynumber: 2.8 Consensus size: 24
14879176 TTTTAATATT
* *
14879186 TTAATTAATTAATATATATTATTA
1 TTAATTAAATAATATATATAATTA
*
14879210 TTAATTAAAATAATATTTATAATTA
1 TTAATT-AAATAATATATATAATTA
* * *
14879235 CTAATATTATTAATATATAT
1 TTAAT-TAAATAATATATAT
14879255 TATCATTATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 6 0.17
25 29 0.81
26 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (24 bp):
TTAATTAAATAATATATATAATTA
Found at i:14879256 original size:13 final size:13
Alignment explanation
Indices: 14879193--14879269 Score: 54
Period size: 13 Copynumber: 6.1 Consensus size: 13
14879183 ATTTTAATTA
14879193 ATTAATATATATT
1 ATTAATATATATT
14879206 ATT-AT-TA-ATT
1 ATTAATATATATT
* * *
14879216 AAAATAATATTTATA
1 --ATTAATATATATT
*
14879231 ATTACTA-ATATT
1 ATTAATATATATT
14879243 ATTAATATATATT
1 ATTAATATATATT
* *
14879256 ATCATTATATATT
1 ATTAATATATATT
14879269 A
1 A
14879270 GGCTAGTTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
10 3 0.06
11 2 0.04
12 13 0.27
13 27 0.56
14 1 0.02
15 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (13 bp):
ATTAATATATATT
Found at i:14880208 original size:12 final size:12
Alignment explanation
Indices: 14880185--14880223 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
14880175 AAATATTATA
14880185 TAAT-TAATAAT
1 TAATCTAATAAT
* *
14880196 TAATTTTATAAT
1 TAATCTAATAAT
14880208 TAATCTAATAAT
1 TAATCTAATAAT
14880220 TAAT
1 TAAT
14880224 ATTCTGAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (12 bp):
TAATCTAATAAT
Found at i:14880284 original size:23 final size:22
Alignment explanation
Indices: 14880258--14880301 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
14880248 ATGAATAAAT
14880258 TATTAATATTATTAATAATATTA
1 TATTAATATTATTAAT-ATATTA
14880281 TATTAATATTATTAATATATT
1 TATTAATATTATTAATATATT
14880302 TAATAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTAATATTATTAATATATTA
Found at i:14881552 original size:300 final size:296
Alignment explanation
Indices: 14881013--14881561 Score: 687
Period size: 300 Copynumber: 1.8 Consensus size: 296
14881003 TTGATCAGTG
* *
14881013 CAAATAGTTATGACTACTTGAACAAATATCTATTTCAAATCATTATGAGCTTTTGTTTTATCACA
1 CAAATAGTTATGACTACTTGAACAAATATCTATTTCAAATCATTATGACCTTTTGTATTATCACA
* * *
14881078 AAACAATTGATTCTGTTCGTACAAGCTTATTTGAAATAACATAATTCTAATTTATTAATATTCCA
66 AAACAATTGATTCTGTTCATACAAGCTTATTCGAAATAAAATAATTCTAATTTATTAATATTCCA
* * * * * * * **
14881143 AAAATTTACAAGAGATTTAAAAAATAAATCTATTTACTGAACAAGTTCAAATAGTTATGGCTATT
131 AAAAATAACAAAAGATTTAAAAAATAAATATATTTACTAAACAAATTCAAATAGTAATAACTATT
*
14881208 TGAACAATTATCTATTTCAAATTGCTATGACCTTATGTTTTGTCATAAAACAATTTTTTCTATTC
196 TAAACAATTATCTATTTCAAATTGCTATGACCTTATGTTTTGTCATAAAA-AATTTTTTCTATTC
14881273 ATTCAAACTTATTTCAAATCTATTTACCGAATAAGTT
260 ATTCAAACTTATTTCAAATCTATTTACCGAATAAGTT
* * *
14881310 CAAATAGTTATGACTA-TATGAACAATTATTTATTTCAAATCATTATGACCTTTTGTATT-TCAT
1 CAAATAGTTATGACTACT-TGAACAAATATCTATTTCAAATCATTATGACCTTTTGTATTATCAC
* *
14881373 AAAACAATT-ATTTTTGTTCATGA-AAGCTTATTCGAATTAAAATAATAT-TAATTTATTAATAT
65 AAAACAATTGA-TTCTGTTCAT-ACAAGCTTATTCGAAATAAAATAAT-TCTAATTTATTAATAT
** * * * *
14881435 TTTAATAACTAATAAGTAAAAGATTTAAAAGATAAATATGTTTA-TCAAATAAATTCAAATAGTA
127 TCCAA-AA--AATAA-CAAAAGATTTAAAAAATAAATATATTTACT-AAACAAATTCAAATAGTA
* * * * *
14881499 ATAACTATTTAAATAATTATCTATTTCAAATTGTTTTGATCTTTTGTTTTGTCATAAAAAATT
187 ATAACTATTTAAACAATTATCTATTTCAAATTGCTATGACCTTATGTTTTGTCATAAAAAATT
14881562 GTATCAATTT
Statistics
Matches: 212, Mismatches: 31, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
295 1 0.00
296 58 0.27
297 57 0.27
299 8 0.04
300 88 0.42
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (296 bp):
CAAATAGTTATGACTACTTGAACAAATATCTATTTCAAATCATTATGACCTTTTGTATTATCACA
AAACAATTGATTCTGTTCATACAAGCTTATTCGAAATAAAATAATTCTAATTTATTAATATTCCA
AAAAATAACAAAAGATTTAAAAAATAAATATATTTACTAAACAAATTCAAATAGTAATAACTATT
TAAACAATTATCTATTTCAAATTGCTATGACCTTATGTTTTGTCATAAAAAATTTTTTCTATTCA
TTCAAACTTATTTCAAATCTATTTACCGAATAAGTT
Found at i:14882303 original size:32 final size:28
Alignment explanation
Indices: 14882263--14882327 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 28
14882253 ATAAAATAAA
14882263 TTAA-AGATAATATATATTGAATCTATTAATT
1 TTAATAGATAA-AT-TATTGAAT-TATT-ATT
* *
14882294 TTAATAGATAAATTATTTAATTCTTATT
1 TTAATAGATAAATTATTGAATTATTATT
14882322 TTAATA
1 TTAATA
14882328 TTAATAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 9 0.29
29 3 0.10
30 7 0.23
31 6 0.19
32 6 0.19
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (28 bp):
TTAATAGATAAATTATTGAATTATTATT
Found at i:14883960 original size:356 final size:356
Alignment explanation
Indices: 14883317--14884300 Score: 799
Period size: 358 Copynumber: 2.8 Consensus size: 356
14883307 CAGTAAACTA
* *
14883317 ATTTATTTTTTAAATCTCTTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTTTGGATA
1 ATTTATTTTTTAAATCTCTTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTCTGAATA
* * * *
14883382 AACTTTTGTGAACTAAAACAATTGTTTTATGACAAAACAAAAATTCATAATGATTTTAAATAGAT
66 AACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAATTCATAATGATTTGAAATAGAT
* * * ** *
14883447 AACTGTTTAAATAGTCATAACTATTTGAACTTGTTCTGTAAACAAATTTAGTTTTTCAAATATCT
131 AACTATTCAAATAGTCATAACTATTAGAACTACTTCTGTAAACAAATTTAATTTTTCAAATATCT
* * * * *
14883512 TGCTTATTAATCTTTCAAATTTTCATAAATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAAC
196 TGCTTAATAATCTTTCAAATATTAATAAAGTAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
* * **
14883577 TGAAACAATTATTTTATGATTAAACAAAAGGTCAGAACGATTTGAAATAGATAATTATTCTAATA
261 TGAAACAATTATTTCATCACAAAACAAAAGGTCAGAACGATTTGAAATAGATAATTATTCTAATA
14883642 ATCTTTACAATTTGAACTGATCGGCCAGCAC
326 ATCTTTACAATTTGAACTGATCGGCCAGCAC
** *
14883673 ATTTATTTTTTAAATCTCTTATTAATTTTCAAAATATT-ATTAAATTAGTATTATTTT-TATCTG
1 ATTTATTTTTTAAATCTC---TTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTAT-TCTG
* * *
14883736 AATCAGCTTATATGATA-AAAAACAATTGTTTTATGACAAAACAAAGA-TCATAATGATTTGAGA
62 AATAAACTTATATGA-ACAAAAACAATTGTTTTATGACAAAACAAAAATTCATAATGATTTGA-A
* **
14883799 TTA-ATATTTATTCAAATAGTCATAACTATTAGAACTACTT-TG-AAA-AATAGCTTTAATTTTT
125 ATAGATAACTATTCAAATAGTCATAACTATTAGAACTACTTCTGTAAACAA-A--TTTAATTTTT
* * * *
14883860 -AAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTC-AGATAAGT
187 CAAATATCTTGCTTAATAATCTTTCAAATATTAATAAAGTAGTATTATTTTATTTCGA-ATAAGC
* * * * * ** * *
14883923 TTTTATTAACTGAAACAATTGTTTCATCACAAAACAAAATGTCAAAAATAATTTTAAACAGATAA
251 TTGTATGAACTGAAACAATTATTTCATCACAAAACAAAAGGTC-AGAACGATTTGAAATAGATAA
* * * * * * * ** * *
14883988 TTATT-TAGATAGT-TATATCTATTTAAAATTGTTCAGTAAACAG
315 TTATTCTA-ATAATCTTTA-CAATTT-GAACTGATCGGCCAGCAC
*** * * *
14884031 ATTTATTTTTTAAAATCTCTTGCTTTAATTTTTTGAATGTTAA-TAAATTAGTATTATTTTATTC
1 ATTTATTTTTT-AAA--TC-T-C-TTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTC
* * * * * * *
14884095 TAAATAAGCTTGTATGAACTAAAATAATTGTTTTATGACTAAACAAAAGGA-T-AGAATGATTTG
60 TGAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAA--ATTCATAATGATTTG
* *** * * * * *
14884158 AAATAGATAATTATTTTGATAGTCTTAACTATTTGAATTAGTT-TGGCT-AACATATTT-ATTTT
123 AAATAGATAACTATTCAAATAGTCATAACTATTAGAACTACTTCT-G-TAAACAAATTTAATTTT
* * * * * * * * *
14884220 T-TAA-ATCTT--TTATTAATTTTTAAAATATTATTAAATTAGTATCT-TTTTAATCCAAATAAG
186 TCAAATATCTTGCTTAATAATCTTTCAAATATTAATAAAGTAGTAT-TATTTTATTTCGAATAAG
**
14884280 CTTGTATGAAAGGAAACAATT
250 CTTGTATGAACTGAAACAATT
14884301 GTTGTATGAC
Statistics
Matches: 507, Mismatches: 90, Indels: 60
0.77 0.14 0.09
Matches are distributed among these distances:
354 2 0.00
355 5 0.01
356 112 0.22
357 83 0.16
358 138 0.27
359 23 0.05
360 5 0.01
361 84 0.17
362 47 0.09
363 4 0.01
364 3 0.01
365 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (356 bp):
ATTTATTTTTTAAATCTCTTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTCTGAATA
AACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAATTCATAATGATTTGAAATAGAT
AACTATTCAAATAGTCATAACTATTAGAACTACTTCTGTAAACAAATTTAATTTTTCAAATATCT
TGCTTAATAATCTTTCAAATATTAATAAAGTAGTATTATTTTATTTCGAATAAGCTTGTATGAAC
TGAAACAATTATTTCATCACAAAACAAAAGGTCAGAACGATTTGAAATAGATAATTATTCTAATA
ATCTTTACAATTTGAACTGATCGGCCAGCAC
Found at i:14884368 original size:35 final size:36
Alignment explanation
Indices: 14884329--14884404 Score: 104
Period size: 35 Copynumber: 2.2 Consensus size: 36
14884319 GATCATTATG
*
14884329 ATTTGAG-ATAGATAATTGTTCAAA-TAGTCATAACT
1 ATTTGAGTATAAATAATTGTTCAAACT-GTCATAACT
*
14884364 ATTTG-GTATAAATAATTTTTCAAACTGTCATAACT
1 ATTTGAGTATAAATAATTGTTCAAACTGTCATAACT
14884399 ATTTGA
1 ATTTGA
14884405 ACTTGCATGG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
34 1 0.03
35 34 0.94
36 1 0.03
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (36 bp):
ATTTGAGTATAAATAATTGTTCAAACTGTCATAACT
Found at i:14884609 original size:22 final size:22
Alignment explanation
Indices: 14884567--14884610 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14884557 TCAAAAAATA
* *
14884567 TATTTATTTTTAAATTTTTAAT
1 TATTAATTTTTAAATTATTAAT
14884589 TATTAATTTTTGAAA-TATTAAT
1 TATTAATTTTT-AAATTATTAAT
14884611 AAATTTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TATTAATTTTTAAATTATTAAT
Found at i:14884860 original size:181 final size:180
Alignment explanation
Indices: 14884536--14885898 Score: 1076
Period size: 181 Copynumber: 7.5 Consensus size: 180
14884526 GAAACAAAAG
* * *
14884536 GTCATAACTATTTGAACATGTTCAAAAAATATATTTA-TTTTTAAAT-TTTTAATTATTAATTTT
1 GTCATAACTATTTGAACTTGTTCAAAAAATAT-TTTATTTTTTAAATCTCTTACTTATTAATTTT
** * * * * *
14884599 TGAAATATTAATAAATTTA-TATTATTTTATTCAAAATATAAACTTGTATGAATA-AGAACGATC
65 CAAAATATTAATAAA-TTAGTATTATTTTATTC-CAA-ATAAGCTTGTATGAACAGA-AACAATT
* * *
14884662 GTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGCTCAGATA
126 GTTTTATGATAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * *
14884717 GTCATAACTATTTGAACTTGTTCAAAAAATATTTTCATTTTTTATATCTCTTACTCATTAGTTTT
1 GTCATAACTATTTGAACTTGTTCAAAAAATATTTT-ATTTTTTAAATCTCTTACTTATTAATTTT
*** *** * * *
14884782 TGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCCTATATGAA-ATGATACAATTGTT
65 CAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACA-GAAACAATTGTT
* * * * * **
14884846 TTAGGATGAAAC-AAAAGATCAAAATGATTTTAAATAAATAATTACTCAAATA
129 TTATGATAAAACAAAAAG-TCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * * * * * * * *
14884898 GTTATGACTATTTAAACTTGTTCGATAAATATATTTATTTTTAAAATATTTTATTTATTAATTGT
1 GTCATAACTATTTGAACTTGTTCAAAAAATAT-TTTATTTTTTAAATCTCTTACTTATTAATTTT
* * * * * * * *
14884963 CGAAATATTAAAAAATTAATATCATTTTAATCCAAATAAGCTTGTATGGAGAAAAAAAAAATT-T
65 CAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTAT-GA-ACAGAAACAATTGT
* * * * *
14885027 TTTATGATAAAACAAAATGTCATAACGGTTTGAAATAAATAATTGTTCAAACA
128 TTTATGATAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * * * * *
14885080 GTTATGACTATTTGAACTTATTTGGTAAACAA-A-TTTATTTTTTAAATCTTTTACTTATTAAAT
1 GTCATAACTATTTGAACTT-GTT--CAAAAAATATTTTATTTTTTAAATCTCTTACTTATTAATT
* * * ** ** * *
14885143 TTCCAAATATTAATAAATTTGTATAATTTTATTTGAAATAAGCTTGTATGAGTAGAAAAAATTAT
63 TTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGT
* * * *
14885208 TTTATGACAACATAAAATGTCATAATGATTTGAAATAGATAATTGTTCAAATA
128 TTTATGATAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATA
** * * *
14885261 GTCATAACTATTTGAACTTGTTTGAAAAAT-TGTTTCATTTTTTAAATCTCTTAGTCATT-GTTT
1 GTCATAACTATTTGAACTTGTTCAAAAAATAT-TTT-ATTTTTTAAATCTCTTACTTATTAATTT
* * * *
14885324 T-AAGAATATTAAT-AATTAG-ATTTATGTTATTTCAAATAAGCTTTTACGAACAGAAACAATTG
64 TCAA-AATATTAATAAATTAGTA-TTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTG
* * * * * * *
14885386 CTTTGTGATAAAACAAAAGGTCATAATTATTTAAAATAGATAATTATTCAAACA
127 TTTTATGATAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * ** * * * *
14885440 CTCATAACTATTTGCAC-TGGTCAAGCTAACAGTTTCATTTTTTAAATC-CGTTACATATGAATT
1 GTCATAACTATTTGAACTTGTTCAA-AAAATA-TTTTATTTTTTAAATCTC-TTACTTATTAATT
* * * * *
14885503 TTCAAAATATTAATACATTAGCATTACTTTTATTCCAAATAAGATTGTATGAACAAAAACAATTA
63 TTCAAAATATTAATAAATTAGTATTA-TTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTG
* * * * * *
14885568 TTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTTTAAATA
127 TTTTATGATAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* ** * * * * *
14885622 GTTATAACTAACTAAACTAGTTTAATAAACACA-TTTATTTTTTAAATCTCTTACTTCTTAATTT
1 GTCATAACTATTTGAACTTGTTCAA-AAA-ATATTTTATTTTTTAAATCTCTTACTTATTAATTT
* * * * * * * * *
14885686 TCAAAATATGAATAGATTAATATTATTTTATTCTAAACAAACTTATATGAACAAAAACACTTGTT
64 TCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTT
* * *
14885751 TTATGACAAAA-GAAAAGTCATAATAATTTGAAATAGATAATTGTTCAAATA
129 TTATGATAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATA
* * * * *
14885802 ATCATAATTATTTGAACTGGTTTGACAAAAAA-A--TTATTTTTTAAATCCCATACTTATTAATT
1 GTCATAACTATTTGAACTTG-TT--CAAAAAATATTTTATTTTTTAAATCTCTTACTTATTAATT
** * *
14885864 TTTTAAATATTAATAAATTTGTTTTATTTTATTCC
63 TTCAAAATATTAATAAATTAGTATTATTTTATTCC
14885899 GAATTGGTTA
Statistics
Matches: 938, Mismatches: 207, Indels: 76
0.77 0.17 0.06
Matches are distributed among these distances:
178 11 0.01
179 169 0.18
180 97 0.10
181 317 0.34
182 276 0.29
183 60 0.06
184 5 0.01
185 3 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (180 bp):
GTCATAACTATTTGAACTTGTTCAAAAAATATTTTATTTTTTAAATCTCTTACTTATTAATTTTC
AAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAGAAACAATTGTTTT
ATGATAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGTTCAAATA
Found at i:14884948 original size:15 final size:18
Alignment explanation
Indices: 14884923--14884958 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
14884913 ACTTGTTCGA
14884923 TAAATATA-TTTATTT-T
1 TAAATATATTTTATTTAT
14884939 TAAA-ATATTTTATTTAT
1 TAAATATATTTTATTTAT
14884956 TAA
1 TAA
14884959 TTGTCGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.17
16 11 0.61
17 4 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TAAATATATTTTATTTAT
Found at i:14884950 original size:16 final size:18
Alignment explanation
Indices: 14884924--14884958 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14884914 CTTGTTCGAT
14884924 AAATATATTTATTT-TTA
1 AAATATATTTATTTATTA
14884941 AAATAT-TTTATTTATTA
1 AAATATATTTATTTATTA
14884958 A
1 A
14884959 TTGTCGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AAATATATTTATTTATTA
Found at i:14885601 original size:361 final size:361
Alignment explanation
Indices: 14885116--14885822 Score: 811
Period size: 361 Copynumber: 2.0 Consensus size: 361
14885106 AAACAAATTT
** * * * * * **
14885116 ATTTTTTAAATCTTTTACTTATTAAATTTCCAAATATTAATAAATTTGTATAATTTTATTTGAAA
1 ATTTTTTAAATCCGTTACATATGAAATTTCAAAATATTAATAAATTAGCATAATTTTATTCCAAA
* ** * * * * *
14885181 TAAGCTTGTATGAGTAGAAAAAATTATTTTATGACAACATAAAATGTCATAATGATTTGAAATAG
66 TAAGATTGTATGAACAGAAAAAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAA
* ** * * ***
14885246 ATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGAA-AAA-TTGTTTCATTTTTTAAATC
131 AGAATTGTTCAAATAGTCATAACTAACTAAACTAGTTT-AATAAACACATTT-ATTTTTTAAATC
* * * * *
14885309 TCTTA-GTCATT-GTTTT-AAGAATATTAATA-ATTAGAT-TTATGTTATT-TCAAATAAGCTTT
194 TCTTACGTC-TTAATTTTCAA-AATATGAATAGATTA-ATATTATGTTATTCT-AAACAAACTTA
* * * *
14885368 TACGAACAGAAACAATTGCTTTGTGATAAAACAAAAGGTCATAATTATTTAAAATAGATAATTAT
255 TACGAACAAAAACAATTGCTTTATGACAAAACAAAA-GTCATAATAATTTAAAATAGATAATTAT
* *
14885433 TCAAACACTCATAACTATTTGCACTGGTCAAGCTAACAGTTTC
319 TCAAACAATCATAACTATTTGAACTGGTCAAGCTAACAGTTTC
* * *
14885476 ATTTTTTAAATCCGTTACATATGAATTTTCAAAATATTAATACATTAGCATTACTTTTATTCCAA
1 ATTTTTTAAATCCGTTACATATGAAATTTCAAAATATTAATAAATTAGCA-TAATTTTATTCCAA
14885541 ATAAGATTGTATGAACA-AAAACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAAT
65 ATAAGATTGTATGAACAGAAAA-AATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAAT
* *
14885605 AAAGAATTGTTTAAATAGTTATAACTAACTAAACTAGTTTAATAAACACATTTATTTTTTAAATC
129 AAAGAATTGTTCAAATAGTCATAACTAACTAAACTAGTTTAATAAACACATTTATTTTTTAAATC
* * *
14885670 TCTTACTTCTTAATTTTCAAAATATGAATAGATTAATATTATTTTATTCTAAACAAACTTATATG
194 TCTTACGTCTTAATTTTCAAAATATGAATAGATTAATATTATGTTATTCTAAACAAACTTATACG
* * * * *
14885735 AACAAAAACACTTGTTTTATGACAAAAGAAAAGTCATAATAATTTGAAATAGATAATTGTTCAAA
259 AACAAAAACAATTGCTTTATGACAAAACAAAAGTCATAATAATTTAAAATAGATAATTATTCAAA
* *
14885800 TAATCATAATTATTTGAACTGGT
324 CAATCATAACTATTTGAACTGGT
14885823 TTGACAAAAA
Statistics
Matches: 286, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
360 47 0.16
361 117 0.41
362 69 0.24
363 52 0.18
364 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.39
Consensus pattern (361 bp):
ATTTTTTAAATCCGTTACATATGAAATTTCAAAATATTAATAAATTAGCATAATTTTATTCCAAA
TAAGATTGTATGAACAGAAAAAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAA
AGAATTGTTCAAATAGTCATAACTAACTAAACTAGTTTAATAAACACATTTATTTTTTAAATCTC
TTACGTCTTAATTTTCAAAATATGAATAGATTAATATTATGTTATTCTAAACAAACTTATACGAA
CAAAAACAATTGCTTTATGACAAAACAAAAGTCATAATAATTTAAAATAGATAATTATTCAAACA
ATCATAACTATTTGAACTGGTCAAGCTAACAGTTTC
Found at i:14885665 original size:542 final size:541
Alignment explanation
Indices: 14884568--14885896 Score: 1400
Period size: 542 Copynumber: 2.4 Consensus size: 541
14884558 CAAAAAATAT
* **
14884568 ATTTA-TTTTTAAAT-TTTTAATTATTAATTTTTGAAATATTAATAAATTTATATTATTTTATTC
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTTATATTATTTTATTC
* ** *
14884631 AAAATATAAACTTGTATGAATAAGAACGATCGTTTTATGACAAAACAAAAAGTCATAATGATTTG
66 -TAA-ATAAACTTGTATG-ATAA-AAAAATTGTTTTATGACAAAAC-AAAAGTCATAATGATTTG
* * **
14884696 AAATAGATAATTGCTCAGATAGTCATAACTATTTGAACTTGTTCAAAAAATATTTTCATTTTTTA
126 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGAAAAATATTTTCATTTTTTA
* ** * **
14884761 TATCTCTTACTCATTAGTTTTTGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCCTA
191 AATCTCTTACTCATTAGTTTTAAGAATATTAATAAATTAGTATTATGTTATTTCAAATAAGCCTA
* * * * *
14884826 TATGAAATGATACAATTGTTTTAGGATGAAACAAAAGATCAAAATGATTTTAAATAAATAATTAC
256 TACGAAATGAAACAATTGCTTTAGGATAAAACAAAAGATCAAAATGATTTAAAATAAATAATTAC
* * * * * * ** **
14884891 TCAAATAGTTATGACTATTTAAACTTGTTCGATAAATATATTTATTTTTAAAATATTTTATTTAT
321 TCAAACACTCATAACTATTTAAACTTGGTCGATAAATATATTCATTTTTAAAATACGTTACATAT
* * * *
14884956 TAATTGTCGAAATATTAAAAAATTAATATCATTTTAATCCAAATAAGCTTGTATGGAGAAAAAAA
386 GAATTGTCAAAATATTAAAAAATTAACATCATTTTAATCCAAATAAGATTGTATGGAGAAAAAAA
* * * * *
14885021 AAATTTTTTATGATAAAACAAAATGTCATAACGGTTTGAAATAAATAATTGTTCAAACAGTTATG
451 AAATTTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTTCAAACAGTTATA
** * **
14885086 ACTATTTGAACTTATTTGGTAAACAA
516 ACTAACTAAACTTATTTAATAAACAA
* * * *
14885112 ATTTATTTTTTAAATCTTTTACTTATTAAATTTCCAAATATTAATAAATTTGTATAATTTTATT-
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTTATATTATTTTATTC
* * * *
14885176 TGAAATAAGCTTGTATGAGTAGAAAAAATTATTTTATGACAACATAAAATGTCATAATGATTTGA
66 T-AAATAAACTTGTATGA-TA-AAAAAATTGTTTTATGACAAAACAAAA-GTCATAATGATTTGA
14885241 AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGAAAAAT-TGTTTCATTTTTTA
127 AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGAAAAATAT-TTTCATTTTTTA
* *
14885305 AATCTCTTAGTCATT-GTTTTAAGAATATTAAT-AATTAG-ATTTATGTTATTTCAAATAAGCTT
191 AATCTCTTACTCATTAGTTTTAAGAATATTAATAAATTAGTA-TTATGTTATTTCAAATAAGCCT
* * * * *
14885367 TTACGAACA-GAAACAATTGCTTT-GTGATAAAACAAAAGGTCATAATTATTTAAAATAGATAAT
255 ATACGAA-ATGAAACAATTGCTTTAG-GATAAAACAAAAGATCAAAATGATTTAAAATAAATAAT
* ** * * * *
14885430 TATTCAAACACTCATAACTATTTGCAC-TGGTCAAGCTAACA-GT-TTCATTTTTTAAATCCGTT
318 TACTCAAACACTCATAACTATTTAAACTTGGTC--GATAA-ATATATTCATTTTTAAAATACGTT
* * * * * *
14885492 ACATATGAATTTTCAAAATATTAATACATTAGCATTACTTTTATTCCAAATAAGATTGTAT-GA-
380 ACATATGAATTGTCAAAATATTAAAAAATTAACATCA-TTTTAATCCAAATAAGATTGTATGGAG
* * *
14885555 ACAAAAACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTTTAAA
444 AAAAAAAAAATT-TTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTTCAAA
* *
14885620 TAGTTATAACTAACTAAAC-TAGTTTAATAAACAC
508 CAGTTATAACTAACTAAACTTA-TTTAATAAACAA
* * * * *
14885654 ATTTATTTTTTAAATCTCTTACTTCTTAATTTTCAAAATATGAATAGATTAATATTATTTTATTC
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTTATATTATTTTATTC
* * * *
14885719 TAAACAAACTTATATGA-ACAAAAACACTTGTTTTATGACAAAAGAAAAGTCATAATAATTTGAA
66 TAAATAAACTTGTATGATA-AAAAA-A-TTGTTTTATGACAAAACAAAAGTCATAATGATTTGAA
* * * **
14885783 ATAGATAATTGTTCAAATAATCATAATTATTTGAACTGGTTTGACAAAA-AAATT-ATTTTTTAA
128 ATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGA-AAAATATTTTCATTTTTTAA
* * * * * * * *
14885846 ATCCCATACTTATTAATTTTTTA-AATATTAATAAATTTGTTTTATTTTATT
192 ATCTCTTACTCATT-AGTTTTAAGAATATTAATAAATTAGTATTATGTTATT
14885897 CCGAATTGGT
Statistics
Matches: 651, Mismatches: 109, Indels: 52
0.80 0.13 0.06
Matches are distributed among these distances:
540 25 0.04
541 86 0.13
542 315 0.48
543 49 0.08
544 122 0.19
545 12 0.02
546 42 0.06
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (541 bp):
ATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTTATATTATTTTATTC
TAAATAAACTTGTATGATAAAAAAATTGTTTTATGACAAAACAAAAGTCATAATGATTTGAAATA
GATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGAAAAATATTTTCATTTTTTAAATCT
CTTACTCATTAGTTTTAAGAATATTAATAAATTAGTATTATGTTATTTCAAATAAGCCTATACGA
AATGAAACAATTGCTTTAGGATAAAACAAAAGATCAAAATGATTTAAAATAAATAATTACTCAAA
CACTCATAACTATTTAAACTTGGTCGATAAATATATTCATTTTTAAAATACGTTACATATGAATT
GTCAAAATATTAAAAAATTAACATCATTTTAATCCAAATAAGATTGTATGGAGAAAAAAAAAATT
TTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTTCAAACAGTTATAACTAA
CTAAACTTATTTAATAAACAA
Found at i:14885938 original size:179 final size:179
Alignment explanation
Indices: 14883335--14885898 Score: 1178
Period size: 182 Copynumber: 14.2 Consensus size: 179
14883325 TTTAAATCTC
* * **** * * * **
14883335 TTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTTTGGATAAACTTTTGTGAACTAAAA
1 TTAATTTTCAAAATATTAA-TAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAAGAAAA
* ** * * *
14883400 CAATTGTTTTATGACAAAACAAAAATTCATAATGATTTTAAATAGATAACTGTTTAAATAGTCAT
65 -AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * * ** *
14883465 AACTATTTGAACTTGTTCTGTA-AACAAATTTAGTTTTTCAAATATCTTGCTTA
129 AACTATTTGAACTGGTT-TG-ACAAAAAATTTA-TTTTTTAAATCCCTTACTTA
* * * * * *
14883518 TTAATCTTTC-AAATTTTCATAAATTAGTATTATTTTCTTTCGAATAAGCTTGTATGAACTGAAA
1 TTAAT-TTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAA-AGAAA
* ** * * * * * *
14883582 CAATTATTTTATGATTAAACAAAAGGTCAGAACGATTTGAAATAGATAATTATTCTAATAATCTT
64 AAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * * ** * ** *
14883647 TACAATTTGAACTGATCGGCCAGCACATTTATTTTTTAAAT--C-T-CTTA
129 AACTATTTGAACTGGTTTGACAAAAAATTTATTTTTTAAATCCCTTACTTA
* ** * *
14883694 TTAATTTTCAAAATATTATTAAATTAGTATTATTTT-TATCTGAATCAGCTTATATGATAA-AAA
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTAT-TCCAAATAAGCTTGTATGA-AAGAAA
* * * * *
14883757 ACAATTGTTTTATGACAAAAC-AAAGATCATAATGATTTGAGATTA-ATATTTATTCAAATAGTC
64 A-AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGA-AATAGATAATTGTTCAAATAGTC
* ** * * * *
14883820 ATAACTATTAGAACTACTTTGA-AAAATAGCTTTAATTTTTAAATCTCTTGCTTA
127 ATAACTATTTGAACTGGTTTGACAAAA-A-ATTTATTTTTTAAATCCCTTACTTA
* ** * * * * * * * *
14883874 ATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAGATAAGTTTTTATTAACTGAAAC
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAA-AGAAAA
* * * * * * * * * * * *
14883939 AATTGTTTCATCACAAAACAAAATGTCAAAAATAATTTTAAACAGATAATTATTTAGATAGTTAT
65 AATTATTTTATGACAAAACAAAAGGTC-ATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * * * * * * * *
14884004 ATCTATTTAAAATTGTTCAGTA-AACAGATTTATTTTTTAAAATCTCTTGC-T-
129 AACTATTTGAACTGGTT-TG-ACAAAAAATTTATTTTTT-AAATCCCTTACTTA
*** * * **
14884055 TTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCTAAATAAGCTTGTATGAACTAAAAT
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAAGAAAA-
* * * * *** *
14884120 AATTGTTTTATGACTAAACAAAAGGAT-AGAATGATTTGAAATAGATAATTATTTTGATAGTCTT
65 AATTATTTTATGACAAAACAAAAGG-TCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * * * *
14884184 AACTATTTGAATTAGTTTGGCTAACATATTTATTTTTTAAAT--CTT--TTA
129 AACTATTTGAACTGGTTTGAC-AAAAAATTTATTTTTTAAATCCCTTACTTA
* * *
14884232 TTAATTTTTAAAATATTATTAAATTAGTATCT-TTTTAATCCAAATAAGCTTGTATGAAAGGAAA
1 TTAATTTTCAAAATATTAATAAATTAGTAT-TATTTTATTCCAAATAAGCTTGTATGAAA-GAAA
* * * * * * *
14884296 CAATTGTTGTATGACAAAA-TAAAGATCATTATGATTTGAGATAGATAATTGTTCAAATAGTCAT
64 AAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * * * * *
14884360 AACTA-TT----TGG--T----ATAAA-TAATTTTTCAAACTGTCATAAC-TA
129 AACTATTTGAACTGGTTTGACAAAAAATTTATTTTTTAAA-T-CCCTTACTTA
* * * ** * * * * * ** ****
14884400 TTTGAACTTGCATGGTAAATAGATTTAT-TTTTTG-ACTCTTTTACTTATCAATTTTGGGAATAT
1 -TT-AATTTTCA----AAAT--ATTAATAAATTAGTATTATTTTA-TT-CCAAATAAGCTTGTAT
* * * ** ** * ** * ** * **
14884463 -AAATAAACTAGTACTATTTTATTTCGAATACACTTGTATGAACAGAAACATTT--AGTTTATAA
56 GAAAGAAA--A-AATTATTTTATGAC-AA-A-AC--AAAAGGTCATAATGATTTGAAATAGATAA
** * * **
14884525 -TGAAACAAA-AGGTCATAACTATTTGAACAT-G-TTCAAAAAATATATTTA-TTTTTAAAT-TT
113 TTG-TTCAAATA-GTCATAACTATTTGAAC-TGGTTTGACAAAA-A-ATTTATTTTTTAAATCCC
*
14884584 TTAATTA
173 TTACTTA
** * *
14884591 TTAATTTTTGAAATATTAATAAATTTA-TATTATTTTATTCAAAATATAAACTTGTATGAATA-A
1 TTAATTTTCAAAATATTAATAAA-TTAGTATTATTTTATTC-CAA-ATAAGCTTGTATGAA-AGA
** ** * * *
14884654 GAACGATCGTTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGCTCAGATAGT
62 -AAAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
* * * * *
14884719 CATAACTATTTGAACTTG-TTCA-AAAAATATTTTCATTTTTTATATCTCTTACTCA
126 CATAACTATTTGAACTGGTTTGACAAAAA-A-TTT-ATTTTTTAAATCCCTTACTTA
* *** *** * * * *
14884774 TTAGTTTTTGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCCTATATGAAATGATAC
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAA-GAAAA
* * ** * * * * ** * *
14884839 AATTGTTTTAGGATGAAACAAAAGATCAAAATGATTTTAAATAAATAATTACTCAAATAGTTATG
65 AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* * * * * * *** *
14884904 ACTATTTAAACTTGTTCGATAAATATATTTATTTTTAAAATATTTTATTTA
130 ACTATTTGAACTGGTTTGACAAA-AAATTTATTTTTTAAATCCCTTACTTA
* * * * * * *
14884955 TTAATTGTCGAAATATTAAAAAATTAATATCATTTTAATCCAAATAAGCTTGTATGGAGAAAAAA
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTAT---GAAAGAA
* * * * * * *
14885020 AAAATT-TTTTATGATAAAACAAAATGTCATAACGGTTTGAAATAAATAATTGTTCAAACAGTTA
63 AAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
* ** ** **
14885084 TGACTATTTGAACTTATTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTA
128 TAACTATTTGAACTGGTTTGACAAA-AAATTTATTTTTTAAATCCCTTACTTA
* * * * ** *
14885137 TTAAATTTCCAAATATTAATAAATTTGTATAATTTTATTTGAAATAAGCTTGTATGAGTAGAAAA
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGA-AAGAAAA
* * *
14885202 AATTATTTTATGACAACATAAAATGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
65 AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATA
* ** * * *
14885267 ACTATTTGAACTTGTTTGA-AAAATTGTTTCATTTTTTAAATCTCTTAGTCA
130 ACTATTTGAACTGGTTTGACAAAA-AATTT-ATTTTTTAAATCCCTTACTTA
* * * * *
14885318 TT-GTTTT-AAGAATATTAAT-AATTAG-ATTTATGTTATTTCAAATAAGCTTTTACGAACAGAA
1 TTAATTTTCAA-AATATTAATAAATTAGTA-TTATTTTATTCCAAATAAGCTTGTATGAA-AGAA
* ** * * * * * * *
14885379 ACAATTGCTTTGTGATAAAACAAAAGGTCATAATTATTTAAAATAGATAATTATTCAAACACTCA
63 AAAATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
* ** * * * * *
14885444 TAACTATTTGCACTGG-TCAAGCTAACAGTTTCATTTTTTAAATCCGTTACATA
128 TAACTATTTGAACTGGTTTGA-CAAAAAATTT-ATTTTTTAAATCCCTTACTTA
* * * *
14885497 TGAATTTTCAAAATATTAATACATTAGCATTACTTTTATTCCAAATAAGATTGTATGAACA-AAA
1 TTAATTTTCAAAATATTAATAAATTAGTATTA-TTTTATTCCAAATAAGCTTGTATGAA-AGAAA
* * * * *
14885561 ACAATTATTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTTTAAATAGTTA
64 A-AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCA
** * * * * * * *
14885626 TAACTAACTAAACTAGTTTAATAAACACATTTATTTTTTAAATCTCTTACTTC
128 TAACTATTTGAACTGGTTTGACAAA-AAATTTATTTTTTAAATCCCTTACTTA
* * * * * * *
14885679 TTAATTTTCAAAATATGAATAGATTAATATTATTTTATTCTAAACAAACTTATATGAACA-AAAA
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAA-AGAAAA
* * * * *
14885743 CACTTGTTTTATGACAAAAGAAAA-GTCATAATAATTTGAAATAGATAATTGTTCAAATAATCAT
65 -AATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCAT
* * *
14885807 AATTATTTGAACTGGTTTGACAAAAAAATTATTTTTTAAATCCCATACTTA
129 AACTATTTGAACTGGTTTGACAAAAAATTTATTTTTTAAATCCCTTACTTA
** * *
14885858 TTAATTTTTTAAATATTAATAAATTTGTTTTATTTTATTCC
1 TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCC
14885899 GAATTGGTTA
Statistics
Matches: 1791, Mismatches: 472, Indels: 240
0.72 0.19 0.10
Matches are distributed among these distances:
163 10 0.01
164 4 0.00
167 1 0.00
168 2 0.00
169 3 0.00
170 5 0.00
171 2 0.00
173 1 0.00
174 15 0.01
175 62 0.03
176 130 0.07
177 79 0.04
178 11 0.01
179 199 0.11
180 238 0.13
181 425 0.24
182 430 0.24
183 99 0.06
184 25 0.01
185 17 0.01
186 4 0.00
187 5 0.00
189 4 0.00
190 4 0.00
191 4 0.00
192 2 0.00
193 8 0.00
194 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (179 bp):
TTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAAGAAAAA
ATTATTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAA
CTATTTGAACTGGTTTGACAAAAAATTTATTTTTTAAATCCCTTACTTA
Found at i:14886689 original size:20 final size:20
Alignment explanation
Indices: 14886654--14886691 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14886644 TTATATTAAT
* *
14886654 AATAATTATTATTATTATTA
1 AATAATTATAAATATTATTA
14886674 AATAATTATAAATATTAT
1 AATAATTATAAATATTAT
14886692 ATATTATACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
AATAATTATAAATATTATTA
Found at i:14887388 original size:28 final size:28
Alignment explanation
Indices: 14887356--14887516 Score: 81
Period size: 28 Copynumber: 5.9 Consensus size: 28
14887346 TTAAATTTTA
14887356 ATTATTAATATATATAAATATATTATAT
1 ATTATTAATATATATAAATATATTATAT
* ** *
14887384 ATTA-TAA-ATCTA-ATTTAGATTATAT
1 ATTATTAATATATATAAATATATTATAT
* *
14887409 ATAATTAAGTA-ATATTAAAATATATTATTT
1 ATTATTAA-TATATA-T-AAATATATTATAT
* *
14887439 AATTAATAA-ATATTTAAATAT-TTATAT
1 -ATTATTAATATATATAAATATATTATAT
* * *
14887466 -TAATTATATTTATATTAATTATATTATA-
1 ATTATTA-ATATATA-TAAATATATTATAT
*
14887494 ATTAATT-ATA-ATATAATTATATT
1 ATT-ATTAATATATATAAATATATT
14887517 TATTATAATG
Statistics
Matches: 98, Mismatches: 21, Indels: 30
0.66 0.14 0.20
Matches are distributed among these distances:
25 17 0.17
26 18 0.18
27 16 0.16
28 19 0.19
29 8 0.08
30 14 0.14
31 6 0.06
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (28 bp):
ATTATTAATATATATAAATATATTATAT
Found at i:14887389 original size:18 final size:18
Alignment explanation
Indices: 14887358--14887519 Score: 65
Period size: 18 Copynumber: 8.7 Consensus size: 18
14887348 AAATTTTAAT
14887358 TATTA-ATATATATAAATA
1 TATTATATAT-TATAAATA
*
14887376 TATTATATATTATAAATC
1 TATTATATATTATAAATA
* *
14887394 TAATT-TAGATTATATATA
1 T-ATTATATATTATAAATA
14887412 -ATTAAGTAATATTA-AAATA
1 TATT-A-T-ATATTATAAATA
*
14887431 TATTATTTAATTAATAAATA
1 TATTATAT-ATT-ATAAATA
*
14887451 T-TTAAATATTTATATTAATTA
1 TATTATATA-TTATA--AA-TA
*
14887472 TATT-TATA-T-TAATTA
1 TATTATATATTATAAATA
14887487 TATTATA-ATTAATTATAATA
1 TATTATATATT-A-TA-AATA
14887507 TAATTATAT-TTAT
1 T-ATTATATATTAT
14887520 TATAATGTAA
Statistics
Matches: 109, Mismatches: 12, Indels: 45
0.66 0.07 0.27
Matches are distributed among these distances:
15 7 0.06
16 7 0.06
17 1 0.01
18 33 0.30
19 24 0.22
20 21 0.19
21 14 0.13
22 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.51
Consensus pattern (18 bp):
TATTATATATTATAAATA
Found at i:14887474 original size:9 final size:9
Alignment explanation
Indices: 14887460--14887523 Score: 59
Period size: 9 Copynumber: 7.6 Consensus size: 9
14887450 ATTTAAATAT
14887460 TTATATTAA
1 TTATATTAA
14887469 TTATA-T--
1 TTATATTAA
14887475 TTATATTAA
1 TTATATTAA
14887484 TTATATT-A
1 TTATATTAA
14887492 -TA-ATTAA
1 TTATATTAA
14887499 TTATAATATAA
1 TTAT-AT-TAA
*
14887510 TTATATTTA
1 TTATATTAA
14887519 TTATA
1 TTATA
14887524 ATGTAATCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 16
0.73 0.02 0.25
Matches are distributed among these distances:
6 8 0.17
7 4 0.09
8 4 0.09
9 19 0.41
10 4 0.09
11 7 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTATATTAA
Found at i:14887474 original size:15 final size:15
Alignment explanation
Indices: 14887456--14887519 Score: 84
Period size: 15 Copynumber: 4.5 Consensus size: 15
14887446 AAATATTTAA
14887456 ATATTTATATTAATT
1 ATATTTATATTAATT
14887471 ATATTTATATTAATT
1 ATATTTATATTAATT
14887486 ATA-TTATAATTAATT
1 ATATTTAT-ATTAATT
14887501 ATA---ATA-TAATT
1 ATATTTATATTAATT
14887512 ATATTTAT
1 ATATTTAT
14887520 TATAATGTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
11 8 0.18
12 1 0.02
13 2 0.04
14 6 0.13
15 28 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATATTTATATTAATT
Found at i:14887502 original size:30 final size:31
Alignment explanation
Indices: 14887429--14887536 Score: 97
Period size: 30 Copynumber: 3.7 Consensus size: 31
14887419 AATATTAAAA
* * *
14887429 TATATTAT--TTAATTA-ATAAATATTTAAA
1 TATATTATAATTAATTATATATATAATTAAT
*
14887457 TAT-TTAT-ATTAATTATATTTAT-ATTAAT
1 TATATTATAATTAATTATATATATAATTAAT
14887485 TATATTATAATTAATTATA-ATATAATTATAT
1 TATATTATAATTAATTATATATATAATTA-AT
*
14887516 T-TATTATAATGTAATCATATA
1 TATATTATAAT-TAATTATATA
14887537 AATTACAATA
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
27 4 0.06
28 17 0.26
29 11 0.17
30 23 0.35
31 10 0.15
32 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (31 bp):
TATATTATAATTAATTATATATATAATTAAT
Found at i:14887521 original size:20 final size:19
Alignment explanation
Indices: 14887460--14887535 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 19
14887450 ATTTAAATAT
14887460 TTAT-ATTAATTATATTTA
1 TTATAATTAATTATATTTA
*
14887478 -TATTAATTATATTATAATTAA
1 TTA-TAATTA-ATTAT-ATTTA
14887499 TTATAATATAATTATATTTA
1 TTATAAT-TAATTATATTTA
*
14887519 TTATAATGTAATCATAT
1 TTATAAT-TAATTATAT
14887536 AAATTACAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
17 2 0.04
18 1 0.02
19 4 0.08
20 24 0.50
21 13 0.27
22 4 0.08
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (19 bp):
TTATAATTAATTATATTTA
Found at i:14887525 original size:26 final size:24
Alignment explanation
Indices: 14887460--14887525 Score: 71
Period size: 26 Copynumber: 2.7 Consensus size: 24
14887450 ATTTAAATAT
* *
14887460 TTATATTAATTATATTTATATTAA
1 TTATATTTATTATAATTATATTAA
*
14887484 TTATA-TTATAATTAATTATAATATAA
1 TTATATTTATTA-TAATTAT-AT-TAA
14887510 TTATATTTATTATAAT
1 TTATATTTATTATAAT
14887526 GTAATCATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
23 4 0.12
24 11 0.32
25 2 0.06
26 12 0.35
27 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTATATTTATTATAATTATATTAA
Found at i:14887541 original size:20 final size:20
Alignment explanation
Indices: 14887497--14887547 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
14887487 TATTATAATT
* *
14887497 AATTATAATATAATTATATT
1 AATTATAATATAATCATATA
* *
14887517 TATTATAATGTAATCATATA
1 AATTATAATATAATCATATA
*
14887537 AATTACAATAT
1 AATTATAATAT
14887548 TAATAATTTG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (20 bp):
AATTATAATATAATCATATA
Found at i:14888276 original size:20 final size:20
Alignment explanation
Indices: 14888248--14888310 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
14888238 TTAATTTGTA
*
14888248 TAATATATTAAATAAATATT
1 TAATTTATTAAATAAATATT
14888268 TAATTTATT--AT-AA-A-T
1 TAATTTATTAAATAAATATT
14888283 TAATTTATATTAATATAAATATT
1 TAA-TT-TATTAA-ATAAATATT
14888306 TAATT
1 TAATT
14888311 AAATTGATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 14
0.69 0.02 0.29
Matches are distributed among these distances:
15 4 0.12
16 3 0.09
17 6 0.18
18 2 0.06
20 10 0.29
21 2 0.06
22 3 0.09
23 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TAATTTATTAAATAAATATT
Found at i:14888344 original size:20 final size:20
Alignment explanation
Indices: 14888307--14888344 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14888297 ATAAATATTT
*
14888307 AATTAAATTGATATATTATC
1 AATTAAATTCATATATTATC
14888327 AATTAAATTTCATA-ATTA
1 AATTAAA-TTCATATATTA
14888345 ACGAATTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (20 bp):
AATTAAATTCATATATTATC
Found at i:14888422 original size:5 final size:5
Alignment explanation
Indices: 14888414--14888444 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
14888404 TTAATAGAAT
14888414 ATTTA ATTTA ATTTA A-TTA ATTTA ATTTA AT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATTTA AT
14888445 AATTTGTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTTA
Found at i:14888435 original size:14 final size:14
Alignment explanation
Indices: 14888416--14888449 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
14888406 AATAGAATAT
14888416 TTAATTTAATTTAA
1 TTAATTTAATTTAA
14888430 TTAATTTAATTTAA
1 TTAATTTAATTTAA
14888444 -TAATTT
1 TTAATTT
14888450 GTCATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTAATTTAATTTAA
Found at i:14889049 original size:33 final size:38
Alignment explanation
Indices: 14888973--14889049 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 38
14888963 AATAATTAAA
*
14888973 TAATTTATTAAATTTAATACTATAAATTAATAATATAT
1 TAATTTATTAAATTTAATACTATAAATTAATAAAATAT
*
14889011 T-ATTTATT-AATTT-A-AC-ATAAATTAA-AAAATTT
1 TAATTTATTAAATTTAATACTATAAATTAATAAAATAT
14889043 TAATTTA
1 TAATTTA
14889050 ATTGTAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
32 6 0.17
33 14 0.39
34 2 0.06
35 1 0.03
36 5 0.14
37 7 0.19
38 1 0.03
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (38 bp):
TAATTTATTAAATTTAATACTATAAATTAATAAAATAT
Found at i:14889109 original size:20 final size:20
Alignment explanation
Indices: 14889073--14889114 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
14889063 ATATAATTAT
*
14889073 ATGAATAATTATTTTTAATA
1 ATGAATAATTATATTTAATA
*
14889093 ATGATATAA-TATATTTATTA
1 ATGA-ATAATTATATTTAATA
14889113 AT
1 AT
14889115 AACAATATAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (20 bp):
ATGAATAATTATATTTAATA
Found at i:14889122 original size:23 final size:21
Alignment explanation
Indices: 14889077--14889123 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
14889067 AATTATATGA
**
14889077 ATAATTATTTTTAATAATGAT
1 ATAATTATTTTTAATAACAAT
14889098 ATAATATATTTATTAATAACAAT
1 ATAAT-TATTT-TTAATAACAAT
14889121 ATA
1 ATA
14889124 GTTTAATTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 5 0.23
23 12 0.55
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
ATAATTATTTTTAATAACAAT
Found at i:14890143 original size:182 final size:178
Alignment explanation
Indices: 14889880--14890449 Score: 568
Period size: 182 Copynumber: 3.2 Consensus size: 178
14889870 AAACAATTGG
* * * * *
14889880 TTTTGAAACATTAATAAATTTA-TATTATTTTATTTGAAATAAGCGTGAATGAATAGAACCAACT
1 TTTTGAAATATTAATAAA-TTAGTATTA-TTTATTTCAAATAAGC-TAAATGAATAGAAACAATT
* * *
14889944 GCTTTATGACAAAACAAAAGGTTGTAATGTTTTGAAATAGATAATTATTAAGATAGTCATAACTA
63 GTTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTAAGATAGTCATAACTA
* * *
14890009 TTTGAACTTGTTTGATAAACATATTTATTTTTTTAATTCTCTTACTTTTTTAAT
128 TTTGAATTTGTTTGATAAACA-ATTTATTTTTTAAATTCT-TTAC-TTATTAAT
* *
14890063 TTTTGGAATATTAATAAATTAGTATTATTTATTTCAAATAAGCTAACATGAATTGAAACAATTGT
1 TTTTGAAATATTAATAAATTAGTATTATTTATTTCAAATAAGCTAA-ATGAATAGAAACAATTGT
* * * * *
14890128 TTTATTACAAAACAAAATGTTACAATGATTTGAAGTAGATAATTATTCAA-ATAGTCATTA-TAT
65 TTTATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATT-AAGATAGTCATAACTAT
* *
14890191 TTGAATTTGTTTGGT-AAC---TTATTTTTTAAAATCTTTTACTTATTAAT
129 TTGAATTTGTTTGATAAACAATTTATTTTTTAAATTC-TTTACTTATTAAT
* * * * ** * *
14890238 TGTTGAAATATTAATAAATCAATATTATTT-TATTCTGAATAAGCTCGTATGGATGGAAACAATT
1 TTTTGAAATATTAATAAATTAGTATTATTTAT-TTC-AAATAAGCT-AAATGAATAGAAACAATT
* * * *
14890302 ATTTTATGACAAAACAAAAAGGTCATAA-GAATTTGAAATAAATAATTATTTAGATAGTCATAAC
63 GTTTTATGACAAAAC-AAAAGGTTATAATG-ATTTGAAATAGATAATTATTAAGATAGTCATAAC
* * *
14890366 GATTTGAATTTGTTCGATAAATAGATTTATTTTTTAAATAT-TTTACTTATTAAT
126 TATTTGAATTTGTTTGATAAACA-ATTTATTTTTTAAAT-TCTTTACTTATTAAT
* * *
14890420 TTTCT-TAATATTAATAAGTTTGTATTATTT
1 TTT-TGAAATATTAATAAATTAGTATTATTT
14890450 TATTCGAAGT
Statistics
Matches: 320, Mismatches: 49, Indels: 37
0.79 0.12 0.09
Matches are distributed among these distances:
174 1 0.00
175 36 0.11
176 54 0.17
177 37 0.12
178 15 0.05
179 2 0.01
180 3 0.01
181 18 0.06
182 117 0.37
183 36 0.11
184 1 0.00
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.44
Consensus pattern (178 bp):
TTTTGAAATATTAATAAATTAGTATTATTTATTTCAAATAAGCTAAATGAATAGAAACAATTGTT
TTATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTAAGATAGTCATAACTATTT
GAATTTGTTTGATAAACAATTTATTTTTTAAATTCTTTACTTATTAAT
Found at i:14890562 original size:359 final size:358
Alignment explanation
Indices: 14889882--14890566 Score: 760
Period size: 358 Copynumber: 1.9 Consensus size: 358
14889872 ACAATTGGTT
** * *
14889882 TTGAAACATTAATAAATTTATATTATTTTATTTGAAATAAGCGTGAATGAATAGAACCAACTGCT
1 TTGAAACATTAATAAATCAATATTATTTTATTTGAAATAAGCGTGAATGAATAGAAACAACTACT
** * * *
14889947 TTATGACAAAACAAAAGGTTGTAATGTTTTGAAATAGATAATTATTAAGATAGTCATAACTATTT
66 TTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTAAGATAGTCATAACGATTT
* * * *
14890012 GAACTTGTTTGATAAACATATTTATTTTTTTAATTCTCTTACTTTTTTAATTTTTGGAATATTAA
131 GAACTTGTTCGATAAACAGATTTATTTTTTAAATTCTCTTACTTTATTAATTTTTGGAATATTAA
** * ** * *
14890077 TAAATTAGTATTATTTATTTCAAATAAGCTAACATGAATTGAAACAATTGTTTTATTACAAAACA
196 TAAATTAGTATTATTTATTTCAAATAAGCTAACATGAATCAAAAAAATCATTATATGACAAAACA
* * ** * * * * *
14890142 AAATGTTACAATGATTTGAAGTAGATAATTATTCAAATAGTCATTATATTTGAATTTGTTTGGTA
261 AAAGGTTACAACGATTCCAAATAGATAATTATTCAAATAGCCATAATATTTAAACTTGTTTGGTA
14890207 ACTTATTTTTTAAAATCTTTTACTTATTAATTG
326 ACTTATTTTTTAAAATCTTTTACTTATTAATTG
* * * * *
14890240 TTGAAATATTAATAAATCAATATTATTTTATTCTG-AATAAGC-TCGTATGGATGGAAACAATTA
1 TTGAAACATTAATAAATCAATATTATTTTATT-TGAAATAAGCGT-GAATGAATAGAAACAACTA
* *
14890303 TTTTATGACAAAACAAAAAGGTCATAA-GAATTTGAAATAAATAATTATTTAGATAGTCATAACG
64 CTTTATGACAAAAC-AAAAGGTCATAATG-ATTTGAAATAAATAATTATTAAGATAGTCATAACG
* * *
14890367 ATTTGAATTTGTTCGATAAATAGATTTATTTTTTAAATAT-T-TTAC-TTATTAATTTTCT-TAA
127 ATTTGAACTTGTTCGATAAACAGATTTATTTTTTAAAT-TCTCTTACTTTATTAATTTT-TGGAA
* * * * *
14890428 TATTAATAAGTTTGTATTATTT-TATTCGAAGTAAGCTTATATGAA-CAAATAAAATCATTATAT
190 TATTAATAAATTAGTATTATTTAT-TTC-AAATAAGCTAACATGAATCAAA-AAAATCATTATAT
* * * * *
14890491 GACAAACCAAAAGGTTATAGCGATTCCAAATCA-ATAATTGTTCAAATGGCCATAATTATTTAAA
252 GACAAAACAAAAGGTTACAACGATTCCAAAT-AGATAATTATTCAAATAGCCATAA-TATTTAAA
14890555 CTTGTTTGGTAA
315 CTTGTTTGGTAA
14890567 ATAATACTAA
Statistics
Matches: 267, Mismatches: 49, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
356 1 0.00
357 38 0.14
358 131 0.49
359 96 0.36
360 1 0.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (358 bp):
TTGAAACATTAATAAATCAATATTATTTTATTTGAAATAAGCGTGAATGAATAGAAACAACTACT
TTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTAAGATAGTCATAACGATTT
GAACTTGTTCGATAAACAGATTTATTTTTTAAATTCTCTTACTTTATTAATTTTTGGAATATTAA
TAAATTAGTATTATTTATTTCAAATAAGCTAACATGAATCAAAAAAATCATTATATGACAAAACA
AAAGGTTACAACGATTCCAAATAGATAATTATTCAAATAGCCATAATATTTAAACTTGTTTGGTA
ACTTATTTTTTAAAATCTTTTACTTATTAATTG
Found at i:14890920 original size:20 final size:19
Alignment explanation
Indices: 14890862--14890921 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
14890852 AACTAATATT
*
14890862 TTAAATAAATATTTTTAT-
1 TTAATTAAATATTTTTATA
*
14890880 TTAATTAATTATTATTTATA
1 TTAATTAAATATT-TTTATA
14890900 TT-ATTATAATATTTTTAATA
1 TTAATTA-AATATTTTT-ATA
14890920 TT
1 TT
14890922 TTAATTAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
18 11 0.31
19 12 0.34
20 12 0.34
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTAATTAAATATTTTTATA
Found at i:14890959 original size:25 final size:25
Alignment explanation
Indices: 14890918--14890998 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
14890908 ATATTTTTAA
14890918 TATT-TTAATT-AATTAATATATAT
1 TATTATTAATTAAATTAATATATAT
* *
14890941 TATTATTAATTAAAATAATATTTAT
1 TATTATTAATTAAATTAATATATAT
* * *
14890966 AATTACTAA-TATTATTAATATATAT
1 TATTATTAATTA-AATTAATATATAT
*
14890991 TATCATTA
1 TATTATTA
14890999 TATATTAGGC
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
23 4 0.09
24 8 0.18
25 33 0.73
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTATTAATTAAATTAATATATAT
Found at i:14890968 original size:18 final size:19
Alignment explanation
Indices: 14890915--14890981 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
14890905 ATAATATTTT
14890915 TAATATTT-TAATTAATTAA
1 TAATATTTATAATTAA-TAA
14890934 TATATATTATTATTAATTAA-AA
1 TA-ATA-T-TTA-TAATTAATAA
*
14890956 TAATATTTATAATTACTAA
1 TAATATTTATAATTAATAA
*
14890975 TATTATT
1 TAATATT
14890982 AATATATATT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
18 6 0.15
19 13 0.32
20 4 0.10
21 4 0.10
22 6 0.15
24 7 0.17
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATTTATAATTAATAA
Found at i:14891931 original size:12 final size:12
Alignment explanation
Indices: 14891913--14891946 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14891903 AAAATACATA
*
14891913 AATAATTAATTT
1 AATAATTAATCT
*
14891925 TATAATTAATCT
1 AATAATTAATCT
14891937 AATAATTAAT
1 AATAATTAAT
14891947 ATTCTGAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
AATAATTAATCT
Found at i:14892007 original size:23 final size:22
Alignment explanation
Indices: 14891981--14892024 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
14891971 ATGAATAAAT
14891981 TATTAATACTATTAATAATATTA
1 TATTAATACTATTAAT-ATATTA
*
14892004 TATTAATATTATTAATATATT
1 TATTAATACTATTAATATATT
14892025 TAATAATCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTAATACTATTAATATATTA
Found at i:14895192 original size:16 final size:17
Alignment explanation
Indices: 14895171--14895207 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
14895161 TCACAATGAT
14895171 TTTAAATAG-ATAACTA
1 TTTAAATAGCATAACTA
14895187 TTTAAATAGTCATAACTA
1 TTTAAATAG-CATAACTA
14895205 TTT
1 TTT
14895208 GAACTTGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
18 10 0.53
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (17 bp):
TTTAAATAGCATAACTA
Found at i:14896463 original size:181 final size:178
Alignment explanation
Indices: 14894994--14896465 Score: 1182
Period size: 180 Copynumber: 8.2 Consensus size: 178
14894984 GGTAATAACC
* * * ** **
14894994 ATTTGAAATAGATAATTGTTCAAATAG-CTATAATTATTTAAACAAG-TCAGTAAACTA-ATTTT
1 ATTTGAAATAGATAATTATTCAAATAGTC-ATAACTATTTGAACTTGTTTGGTAAAC-AGA-TTT
* * *
14895056 ATTTTTTAAATCTC----TTAATTTTCAAAATATTAAGAAAAGTAGTATTATTTTATTTTGGATA
63 ATTTTTTAAATCTCTTTATTAATTTTCAAAATATTAA-TAAATTAGTATTATTTTATTTTGAATA
* * * * *
14895117 AACTTTTGTGAACTAAAACAATTGTTTTATGAAAAAACAAAA-ATTCACAATG
127 AGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGA-TCATAATG
* * * ** *
14895169 ATTTTAAATAGATAACTATTTAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAAATTTAGT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTA-T
* * * * *
14895234 TTTTCAAATATCTTACTTATTAATCTTTCAAAAT-TTCATAAATTAGTATTATTTTCTTTCGAAT
65 TTTTTAAATCTC-T--TTATTAAT-TTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAAT
* * ** * * *
14895298 AAGCTTGTATGAACTGAAACAATTATTTTATGATTAAACAAAAGGTCAGAACG
126 AAGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGATCATAATG
* * * * * * * * *
14895351 ATTTGAAATAGATAATTATTCTAATAATCTTAACAATTTGAAC-TGATCGGCAAGCACATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATT
* * *
14895415 TTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTT-TATCTGAATC
66 TTTTAAATCTC-T--TTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTAT-TTTGAATA
* *
14895479 AGCTTATATGATA-AAAAACAATTGTTTTATGACAAAAC-AAAGATCATAATG
127 AGCTTGTATGA-ACTAAAACAATTGTTTTATGACAAAACAAAAGATCATAATG
* * * ** ** * * *
14895530 ATTTGAGATTA-ATATTTATTCAAATAGTCATAACTATTAGAACTACTTTGAAAAATAGCTTTAA
1 ATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTAT
* ** * **
14895594 TTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAAATA
65 TTTTTAAATCTC-T--TTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATA
* * * * * *
14895659 AGTTTTTATTAACTGAAACAATTGTTTTATGACAAAACAAAATG-TCAAAATA
127 AGCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAA-GATCATAATG
* * * * * * * **
14895711 ATTTTAAACAGATAATTATTTAGATAGTCATATCTATTTAAAATTGTTCAGTAAACAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATT
*** * * *
14895776 TTTTAAAATCTCTTGCT-TTAATTTTTTGAATGTTAATAAATTAGTATTATTTTATTCTAAATAA
66 TTTT-AAATCTCTT--TATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAA
* * * * *
14895840 GCTTGTATAAACTAAAATAATTGTTTTATGACTAAATAAAAGGAT-AGAATG
128 GCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAA-GATCATAATG
*** * *
14895891 ATTTGAAATAGATAATTATTTTGATAGTCTTAACTATTTGAA-TTAGTTTGGCT-AACATATTTA
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTTGG-TAAACAGATTTA
* * * * ***
14895954 TTTTTTAAATCT-TTTATTAATTTTTAAAATACTATTAAATTAGTATCT-TTTTAATCCAAATAA
64 TTTTTTAAATCTCTTTATTAATTTTCAAAATATTAATAAATTAGTAT-TATTTTATTTTGAATAA
** * * *
14896017 GCTTGTATGAAAGGAAAA-AATTGTTGTATGACAAAA-TAAAGATCATTATG
128 GCTTGTATG-AACTAAAACAATTGTTTTATGACAAAACAAAAGATCATAATG
* * * * *
14896067 ATTTGAGATAGATAATTGTTCAAATAGTCATAACTATTTGAA-TTGGTTTAGTAAATAGATTTAG
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTT-GTTTGGTAAACAGATTTAT
* ** *
14896131 TTTTTAAATCT-GTTATTAATTTTCAAAATATTAATAAA-TAAAATTTATTTTATTTTGAATAAT
65 TTTTTAAATCTCTTTATTAATTTTCAAAATATTAATAAATTAGTA-TTATTTTATTTTGAATAAG
* * * **
14896194 TTTGTATGGAC-AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
129 CTTGTATGAACTA-AAACAATTGTTTTATGACAAAACAAAAGATCATAATG
* * ** * * *
14896244 ATTTGAAATAGGTAATTGTTTTAATGGACATGACTATTTGAACTTGTTTGGTAAACAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATT
* * *
14896309 TTTTAAATCTCCTATGTATTAATTTGCAAAATATTAATTAAGTAGTATTATTTTATTTTGAATAA
66 TTTTAAATCT-CT-T-TATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAA
* * *
14896374 ACTTGTATGAA-TAAAAACAATTGTTTTATGACAAAATAAAAGATCATAATT
128 GCTTGTATGAACT-AAAACAATTGTTTTATGACAAAACAAAAGATCATAATG
* * * * * *
14896425 ATTAGAAATAAAAAATTGTTCAAACAGTTATAACTATTTGA
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
14896466 GCTTAATAAT
Statistics
Matches: 1037, Mismatches: 213, Indels: 88
0.78 0.16 0.07
Matches are distributed among these distances:
174 1 0.00
175 53 0.05
176 151 0.15
177 133 0.13
178 11 0.01
179 62 0.06
180 310 0.30
181 188 0.18
182 111 0.11
183 8 0.01
184 9 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (178 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAACAGATTTATT
TTTTAAATCTCTTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCT
TGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGATCATAATG
Found at i:14896510 original size:6 final size:6
Alignment explanation
Indices: 14896489--14896532 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
14896479 CAATTAATCA
* *
14896489 ATTAAT AATTATT ATTAAT ATTAAA ATTAATT ATTAAT ATTAAT
1 ATTAAT -ATTAAT ATTAAT ATTAAT ATTAA-T ATTAAT ATTAAT
14896533 TATCTAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
6 22 0.69
7 10 0.31
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATTAAT
Found at i:14896511 original size:19 final size:20
Alignment explanation
Indices: 14896489--14896532 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
14896479 CAATTAATCA
14896489 ATTAATAATT-ATTATTAAT
1 ATTAATAATTAATTATTAAT
14896508 ATTAA-AATTAATTATTAAT
1 ATTAATAATTAATTATTAAT
14896527 ATTAAT
1 ATTAAT
14896533 TATCTAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAATAATTAATTATTAAT
Found at i:14896516 original size:25 final size:27
Alignment explanation
Indices: 14896483--14896562 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 27
14896473 AATAATCAAT
14896483 TAATCAATTAATAATTATTATTAATAT-
1 TAAT-AATTAATAATTATTATTAATATC
* *
14896510 TAA-AATTAATTATTAATATTAATTATC
1 TAATAATTAATAATTATTATTAA-TATC
* *
14896537 TAATAATCAATATTTATTATATAATA
1 TAATAATTAATAATTATTAT-TAATA
14896563 AAACAATAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
25 17 0.40
26 3 0.07
27 6 0.14
28 14 0.33
29 3 0.07
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (27 bp):
TAATAATTAATAATTATTATTAATATC
Found at i:14896533 original size:13 final size:13
Alignment explanation
Indices: 14896489--14896541 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
14896479 CAATTAATCA
* *
14896489 ATTAATAATTATT
1 ATTAATTATTAAT
*
14896502 ATTAA-TATTAAA
1 ATTAATTATTAAT
14896514 ATTAATTATTAAT
1 ATTAATTATTAAT
14896527 ATTAATTATCTAAT
1 ATTAATTAT-TAAT
14896541 A
1 A
14896542 ATCAATATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
12 9 0.26
13 20 0.59
14 5 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTAATTATTAAT
Found at i:14896548 original size:21 final size:21
Alignment explanation
Indices: 14896524--14896563 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14896514 ATTAATTATT
*
14896524 AATATTAATTATCTAATAATC
1 AATATTAATTATATAATAATC
*
14896545 AATATTTATTATATAATAA
1 AATATTAATTATATAATAA
14896564 AACAATAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
AATATTAATTATATAATAATC
Found at i:14896832 original size:30 final size:31
Alignment explanation
Indices: 14896776--14896850 Score: 79
Period size: 30 Copynumber: 2.5 Consensus size: 31
14896766 TTAATAATTG
*
14896776 TATTAATA-A-TTAATAATATTATATTAATAT
1 TATTAATATATTTAATAATATCATATTAA-AT
14896806 TATTAATATATTTAATAATA-CA-ATTAAAT
1 TATTAATATATTTAATAATATCATATTAAAT
*
14896835 T-TTAACATATATTAAT
1 TATTAATATAT-TTAAT
14896851 TTTCTATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
28 8 0.20
29 8 0.20
30 13 0.32
31 2 0.05
32 9 0.22
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (31 bp):
TATTAATATATTTAATAATATCATATTAAAT
Found at i:14897951 original size:9 final size:8
Alignment explanation
Indices: 14897937--14897993 Score: 53
Period size: 9 Copynumber: 6.9 Consensus size: 8
14897927 TTTATTATAT
14897937 TAATATTTA
1 TAATA-TTA
14897946 TAATATTA
1 TAATATTA
*
14897954 CTAATAAT-
1 -TAATATTA
14897962 TAATATTA
1 TAATATTA
* *
14897970 TTATAATA
1 TAATATTA
14897978 TAATAATTA
1 TAAT-ATTA
14897987 TAATATT
1 TAATATT
14897994 TTTATAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
7 6 0.15
8 15 0.38
9 18 0.46
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (8 bp):
TAATATTA
Found at i:14897963 original size:25 final size:24
Alignment explanation
Indices: 14897935--14898010 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 24
14897925 AATTTATTAT
14897935 ATTAATATTTATAATATTACTAATA
1 ATTAATATTTATAATATTA-TAATA
* *
14897960 ATTAATA-TTATTATAATATAATA
1 ATTAATATTTATAATATTATAATA
14897983 ATTATAATATTTTTATAATATTAGTAAT
1 A-T-TAATA--TTTATAATATTA-TAAT
14898011 TTTGTTATCC
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
23 6 0.15
24 10 0.24
25 12 0.29
28 9 0.22
29 4 0.10
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
ATTAATATTTATAATATTATAATA
Found at i:14897967 original size:16 final size:16
Alignment explanation
Indices: 14897944--14897991 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
14897934 TATTAATATT
14897944 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
*
14897961 T-TAATATTATTATAA
1 TATAATATTATAATAA
14897976 TATAATAATTATAATA
1 TATAAT-ATTATAATA
14897992 TTTTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 12 0.44
17 9 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:14897978 original size:11 final size:11
Alignment explanation
Indices: 14897962--14898005 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
14897952 TACTAATAAT
14897962 TAATATTATTA
1 TAATATTATTA
14897973 TAATATAATAATTA
1 TAATAT--T-ATTA
*
14897987 TAATATTTTTA
1 TAATATTATTA
14897998 TAATATTA
1 TAATATTA
14898006 GTAATTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 1 0.04
14 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATATTATTA
Found at i:14898346 original size:19 final size:18
Alignment explanation
Indices: 14898322--14898360 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
14898312 TGTTTGAAAT
14898322 ATTAATAATTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
14898341 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
14898359 AT
1 AT
14898361 AAAATAACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:14898366 original size:19 final size:19
Alignment explanation
Indices: 14898325--14898378 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
14898315 TTGAAATATT
*
14898325 AATAATTAATATTTTAATT
1 AATAATTAATATTTTAATA
*
14898344 AATAATTTAT-TTTTAATAA
1 AATAATTAATATTTTAAT-A
14898363 AATAACGTTAATATTT
1 AATAA--TTAATATTT
14898379 GACTATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 7 0.25
19 14 0.50
21 4 0.14
22 3 0.11
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
AATAATTAATATTTTAATA
Found at i:14898863 original size:14 final size:14
Alignment explanation
Indices: 14898846--14898872 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14898836 TCTATTTATA
14898846 TATTATATTTATTG
1 TATTATATTTATTG
14898860 TATTATATTTATT
1 TATTATATTTATT
14898873 AAATAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
TATTATATTTATTG
Found at i:14899130 original size:17 final size:18
Alignment explanation
Indices: 14899086--14899141 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
14899076 TTAGATTACT
**
14899086 TTATTAATGTATAATATAA
1 TTATTAATAAATAAT-TAA
14899105 -TATTAAT-AATAGATTAA
1 TTATTAATAAATA-ATTAA
14899122 TTATT-ATAAATAATTAA
1 TTATTAATAAATAATTAA
14899139 TTA
1 TTA
14899142 CAATTATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 16 0.48
18 17 0.52
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (18 bp):
TTATTAATAAATAATTAA
Found at i:14899352 original size:21 final size:21
Alignment explanation
Indices: 14899328--14899368 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
14899318 ATTAATGTTA
14899328 AATATTAAAATAAATAAATAG
1 AATATTAAAATAAATAAATAG
* *
14899349 AATATTTAAATAATTAAATA
1 AATATTAAAATAAATAAATA
14899369 ATATTTAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.34
Consensus pattern (21 bp):
AATATTAAAATAAATAAATAG
Found at i:14899936 original size:17 final size:17
Alignment explanation
Indices: 14899895--14899949 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
14899885 ATTAATAATA
*
14899895 TTATA-AATAATTATAA
1 TTATATAATAATTATAT
*
14899911 TCA-ATTAATAATTATAT
1 TTATA-TAATAATTATAT
*
14899928 TTATATAAT-ATAATAT
1 TTATATAATAATTATAT
14899944 TTATAT
1 TTATAT
14899950 TAATTTCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 1 0.03
16 14 0.44
17 16 0.50
18 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TTATATAATAATTATAT
Found at i:14899963 original size:22 final size:22
Alignment explanation
Indices: 14899910--14899963 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
14899900 AATAATTATA
*
14899910 ATCAATTAATAATTATATTTAT
1 ATCAATTAATAATTATATTAAT
*
14899932 AT-AATATAATATTTATATTAAT
1 ATCAAT-TAATAATTATATTAAT
*
14899954 TTCAATTAAT
1 ATCAATTAAT
14899964 TATACATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.11
22 21 0.78
23 3 0.11
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (22 bp):
ATCAATTAATAATTATATTAAT
Found at i:14900839 original size:27 final size:27
Alignment explanation
Indices: 14900809--14900866 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 27
14900799 AATTGTTATA
*
14900809 TATATAAT-ATT-AACTATATTATTAAAT
1 TATATAATAATTCAAATATATTA-T-AAT
*
14900836 TATATATTAATTCAAATATATTATAAT
1 TATATAATAATTCAAATATATTATAAT
14900863 TATA
1 TATA
14900867 ATATAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 14 0.52
28 4 0.15
29 9 0.33
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (27 bp):
TATATAATAATTCAAATATATTATAAT
Found at i:14900873 original size:27 final size:30
Alignment explanation
Indices: 14900804--14900874 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 30
14900794 AATATAATTG
* *
14900804 TTATATATATAATATTAACTATATTATTAAA
1 TTATA-ATATAATATCAAATATATTATTAAA
14900835 TTAT-ATATTAAT-TCAAATATATTA-T-AA
1 TTATAATA-TAATATCAAATATATTATTAAA
14900862 TTATAATATAATA
1 TTATAATATAATA
14900875 AATAATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
27 10 0.29
28 4 0.11
29 13 0.37
30 4 0.11
31 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (30 bp):
TTATAATATAATATCAAATATATTATTAAA
Found at i:14901204 original size:16 final size:18
Alignment explanation
Indices: 14901164--14901204 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
14901154 TGAGTTGAAA
*
14901164 TAATAATATTATTTTATT
1 TAATAATTTTATTTTATT
14901182 TAA-AATTTTA-TTTA-T
1 TAATAATTTTATTTTATT
14901197 TAATAATT
1 TAATAATT
14901205 AAATAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 4 0.19
16 8 0.38
17 6 0.29
18 3 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TAATAATTTTATTTTATT
Found at i:14901239 original size:26 final size:29
Alignment explanation
Indices: 14901185--14901244 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
14901175 TTTTATTTAA
14901185 AATT-TTATTTATTAATAATTAAATAATT
1 AATTATTATTTATTAATAATTAAATAATT
*
14901213 ATTTATTATTTATTAAT-ATT-AAT-ATT
1 AATTATTATTTATTAATAATTAAATAATT
14901239 AATTAT
1 AATTAT
14901245 ATTGTATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 8 0.28
27 3 0.10
28 6 0.21
29 12 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
AATTATTATTTATTAATAATTAAATAATT
Found at i:14901320 original size:9 final size:10
Alignment explanation
Indices: 14901306--14901356 Score: 54
Period size: 9 Copynumber: 5.1 Consensus size: 10
14901296 CCAATTGGAT
14901306 TATTAAAT-A
1 TATTAAATAA
14901315 TATT-AATAA
1 TATTAAATAA
14901324 TATTAATATAA
1 TATTAA-ATAA
14901335 TATTATTAATAA
1 TATTA--AATAA
14901347 TATT-AATAA
1 TATTAAATAA
14901356 T
1 T
14901357 TTATTCAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
8 3 0.08
9 15 0.41
10 1 0.03
11 9 0.24
12 8 0.22
13 1 0.03
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TATTAAATAA
Found at i:14901343 original size:23 final size:22
Alignment explanation
Indices: 14901311--14901415 Score: 82
Period size: 23 Copynumber: 4.9 Consensus size: 22
14901301 TGGATTATTA
14901311 AATA-TATTAATAATATTAATAT
1 AATATTATTAATAATATTAA-AT
14901333 AATATTATTAATAATATT-AAT
1 AATATTATTAATAATATTAAAT
**
14901354 AAT-TTATTCAATAGCCATT-AAT
1 AATATTATT-AATA-ATATTAAAT
14901376 AATATTATTAAT--TATT-AAT
1 AATATTATTAATAATATTAAAT
14901395 ACA-ATTATTAATTAATGATTA
1 A-ATATTATTAA-TAAT-ATTA
14901416 TTAAAATTTT
Statistics
Matches: 70, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
19 15 0.21
20 7 0.10
21 9 0.13
22 18 0.26
23 21 0.30
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.46
Consensus pattern (22 bp):
AATATTATTAATAATATTAAAT
Found at i:14901377 original size:31 final size:29
Alignment explanation
Indices: 14901339--14901419 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 29
14901329 ATATAATATT
14901339 ATTAATAATATTAATAATTTATTCAATAGCC
1 ATTAATAATATTAATAA-TTATT-AATAGCC
* *
14901370 ATTAATAATATTATTAATTATTAATA-CA
1 ATTAATAATATTAATAATTATTAATAGCC
* *
14901398 ATT-ATTA-ATTAATGATTATTAA
1 ATTAATAATATTAATAATTATTAA
14901420 AATTTTTTAG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.29
27 3 0.07
28 4 0.09
29 4 0.09
30 5 0.11
31 16 0.36
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (29 bp):
ATTAATAATATTAATAATTATTAATAGCC
Found at i:14901899 original size:16 final size:17
Alignment explanation
Indices: 14901873--14901904 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14901863 TTTTATTATG
14901873 ATAGTTTAATAATATAA
1 ATAGTTTAATAATATAA
14901890 ATAG-TTAATAATATA
1 ATAGTTTAATAATATA
14901905 TTAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
ATAGTTTAATAATATAA
Found at i:14902344 original size:25 final size:27
Alignment explanation
Indices: 14902309--14902371 Score: 76
Period size: 25 Copynumber: 2.4 Consensus size: 27
14902299 TTATAATTAA
*
14902309 TATATTTTTAAATAGTAAT-CAAT-AT
1 TATATTATTAAATAGTAATGCAATAAT
* *
14902334 TATATTATTAAATATTAATGTAATAAT
1 TATATTATTAAATAGTAATGCAATAAT
14902361 TAATATTATTA
1 T-ATATTATTA
14902372 TTAATTAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.53
26 3 0.09
27 3 0.09
28 9 0.28
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
TATATTATTAAATAGTAATGCAATAAT
Found at i:14902378 original size:28 final size:27
Alignment explanation
Indices: 14902301--14902378 Score: 63
Period size: 28 Copynumber: 2.9 Consensus size: 27
14902291 TATTATTATT
* *
14902301 ATAATTAATA-TATTTTTAAAT-AGTA
1 ATAATTAATATTATTATTAATTAAGTA
* *
14902326 ATCAATATTATATTATTA-AATATTAATGTA
1 AT-AAT-TAATATTATTATTA-ATTAA-GTA
14902356 ATAATTAATATTATTATTAATTA
1 ATAATTAATATTATTATTAATTA
14902379 GTAGTTTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
25 2 0.05
26 3 0.08
27 5 0.12
28 20 0.50
29 5 0.12
30 5 0.12
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (27 bp):
ATAATTAATATTATTATTAATTAAGTA
Found at i:14902389 original size:31 final size:30
Alignment explanation
Indices: 14902323--14902396 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 30
14902313 TTTTTAAATA
* *
14902323 GTAATCAATATTA-TATTATTAAATATTAAT
1 GTAAT-AATAATATTATTATTAAATAGTAAT
* *
14902353 GTAATAATTAATATTATTATTAATTAGTAGT
1 GTAATAA-TAATATTATTATTAAATAGTAAT
*
14902384 TTAATAATAATAT
1 GTAATAATAATAT
14902397 AATAATACCA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 2 0.05
30 15 0.41
31 20 0.54
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47
Consensus pattern (30 bp):
GTAATAATAATATTATTATTAAATAGTAAT
Found at i:14902737 original size:19 final size:20
Alignment explanation
Indices: 14902693--14902745 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
14902683 CAAAAATAGC
14902693 TATTTAATTTTAATAGCTATA
1 TATTTAATTTTAATA-CTATA
14902714 TATTTAATTTATAATA-TA-A
1 TATTTAATTT-TAATACTATA
*
14902733 TATTTAATATTAA
1 TATTTAATTTTAA
14902746 ATTTATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 10 0.33
20 2 0.07
21 10 0.33
22 5 0.17
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
TATTTAATTTTAATACTATA
Found at i:14903054 original size:14 final size:14
Alignment explanation
Indices: 14903009--14903054 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
14902999 ACAATAATGA
14903009 TAATATTTAATAAT
1 TAATATTTAATAAT
* *
14903023 TCATATTAAATTAAT
1 TAATATTTAA-TAAT
*
14903038 TAATATTTAAGAAT
1 TAATATTTAATAAT
14903052 TAA
1 TAA
14903055 ATATAGATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
TAATATTTAATAAT
Found at i:14903188 original size:12 final size:12
Alignment explanation
Indices: 14903171--14903195 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14903161 AATATTAAAA
14903171 ATTTTAATTAAT
1 ATTTTAATTAAT
14903183 ATTTTAATTAAT
1 ATTTTAATTAAT
14903195 A
1 A
14903196 ATCTATTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTTAATTAAT
Found at i:14903854 original size:179 final size:179
Alignment explanation
Indices: 14903535--14903993 Score: 443
Period size: 179 Copynumber: 2.6 Consensus size: 179
14903525 ACAATTAACA
* * * * *
14903535 ATTTCAAAAATTAATAAGTAAGAG-TTTAAGAAATGAA-TCTGTTTACCGAA-CATTTTC-AATA
1 ATTTCAAAAATTAATAAATAAGAGATTTAAAAAAT-AATTATGTTTACCGAACCA-ATTCAAAAA
* * * * * * * * *
14903596 GTTTGACTATTTGAACAATTTTATACTTCATATCATTAT-AACATTTTGTTTTGTCATAAAAAAA
64 ATTAGACTATATAAACAATTATATACTTCAAATCATTATGACCA--TTGTCTTGTCATAAAACAA
* *
14903660 TTATT-T-ATGTTCATACAAGCTTATTCAAAATAAAACAATATGAATCTAATAAT
127 TT-TTCTCA-ATTCATACAAGCTTATTCAAAATAAAACAAAATGAATCTAATAAT
* * * *
14903713 A-TTCAAAAAATTAATAACTAAGGGA-TTAAAAAATAAATT-TGTTTGCCGAACCAATTCAAATA
1 ATTTC-AAAAATTAATAAATAAGAGATTTAAAAAAT-AATTATGTTTACCGAACCAATTCAAAAA
* *
14903775 ATTAAGACTATATAAACAATTATCTACTTCAAATCGTTATGACCATTGTCTTGTCATAAAACAAT
64 ATT-AGACTATATAAACAATTATATACTTCAAATCATTATGACCATTGTCTTGTCATAAAACAAT
* ** * * **
14903840 TTTCTCAATTCATACTAGCTTATTTGAAATAAAATAAAATGAATTTGTTAAT
128 TTTCTCAATTCATACAAGCTTATTCAAAATAAAACAAAATGAATCTAATAAT
* *
14903892 ATTTCAAAAATTAATAAATAAGAGATTTACAAAATAATTATGTTTACCTAACCAATTCAAAAAAT
1 ATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAATTATGTTTACCGAACCAATTCAAAAAAT
* * * * *
14903957 TATACTGTTTGAACAATTATATATTTCAAATCATTAT
66 TAGACTATATAAACAATTATATACTTCAAATCATTAT
14903994 TACTTTTTAT
Statistics
Matches: 230, Mismatches: 39, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
177 3 0.01
178 43 0.19
179 117 0.51
180 64 0.28
181 3 0.01
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.37
Consensus pattern (179 bp):
ATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAATTATGTTTACCGAACCAATTCAAAAAAT
TAGACTATATAAACAATTATATACTTCAAATCATTATGACCATTGTCTTGTCATAAAACAATTTT
CTCAATTCATACAAGCTTATTCAAAATAAAACAAAATGAATCTAATAAT
Found at i:14904729 original size:22 final size:21
Alignment explanation
Indices: 14904701--14904743 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
14904691 ATTATAATTT
*
14904701 ATAATAAATTATTTACTTATTA
1 ATAATAAATTA-TTAATTATTA
14904723 ATAATAAATTATTAATTATTA
1 ATAATAAATTATTAATTATTA
14904744 TTAGTTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATAATAAATTATTAATTATTA
Found at i:14904734 original size:14 final size:14
Alignment explanation
Indices: 14904717--14904758 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
14904707 AATTATTTAC
14904717 TTATTAATAATAAA
1 TTATTAATAATAAA
* *
14904731 TTATTAATTAT-TA
1 TTATTAATAATAAA
14904744 TTAGTTAATAATAAA
1 TTA-TTAATAATAAA
14904759 GATAAAATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 4 0.18
14 17 0.77
15 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TTATTAATAATAAA
Found at i:14904767 original size:28 final size:29
Alignment explanation
Indices: 14904704--14904768 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
14904694 ATAATTTATA
*
14904704 ATAAATTATTTACTTATTAATAATAAATT
1 ATAAATTATTTACTTATTAATAATAAAAT
*
14904733 ATTAATTA-TTA-TTAGTTAATAATAAAGAT
1 ATAAATTATTTACTTA-TTAATAATAAA-AT
14904762 A-AAATTA
1 ATAAATTA
14904769 CAATTATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 3 0.10
28 19 0.61
29 9 0.29
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.45
Consensus pattern (29 bp):
ATAAATTATTTACTTATTAATAATAAAAT
Found at i:14904893 original size:11 final size:11
Alignment explanation
Indices: 14904879--14904917 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
14904869 TTTATTAGTT
14904879 ATTTATAATAA
1 ATTTATAATAA
*
14904890 ATTTATTATAAA
1 ATTTATAAT-AA
*
14904902 AATTATAATAA
1 ATTTATAATAA
14904913 ATTTA
1 ATTTA
14904918 AGAATATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATTTATAATAA
Found at i:14905508 original size:177 final size:178
Alignment explanation
Indices: 14905004--14906996 Score: 1368
Period size: 180 Copynumber: 11.2 Consensus size: 178
14904994 ATTAATATTG
* ** * * * * *
14905004 TTTTATGACAAAATAAAAGAACATAACGATTTGAAATAGATAATTGTTCAAACAATCATAATTAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
** * * * *
14905069 TTGAACCGGTT-AGGTAAACTAAATTTTTTTTTTATATCTCTTGCTTATTAAGTTTTGAAATATT
66 TTGAACTTGTTCA-GTAAAC-AAATTTATTTTTTA-A-ATC-TACTTATTAATTTTTGAAATATT
* * * * ** * *
14905133 AATAAATTTGTTTTACTTTA-TTCGAA-ATAAGTTACTAAGAA-ATGAAAAAATTG
126 AATAAATTAGTATTATTTTATTTCGAATA-AACTTA-TGTGAATA-GAAACAATTA
* * * * * *
14905186 TTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAAAGAATTATTC-AATAGCCTTAAATAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
* * * *
14905250 TTGAACTAGTTCAGTAAACAATTTTATTTTTTAAATTTCTTAGTTATTAA-TTTTCAGAATATTA
66 TTGAACTTGTTCAGTAAACAAATTTATTTTTTAAA--TC-TACTTATTAATTTTTGA-AATATTA
* ** * *
14905314 TTGTATTAGTATTATTTTATTTCGAATAAACTTATGTGAATAGAAATAATTG
127 ATAAATTAGTATTATTTTATTTCGAATAAACTTATGTGAATAGAAACAATTA
* * * ** * * * *
14905366 TTTTATGAGATAACAAAAGGTTATAACAATTTAAAATATATAATTGTTCAAATAGTCATAATTAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
* * * * *
14905431 TTGAACTGGTTCAGTAAACAAATTAACTTTTTAAATCT-GTTATTAATTTTTGAAATATTAGTAA
66 TTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATAA
* * ** * * *
14905495 ATTAGTATTATTTTATTCCAAATAGGCTTGTATG-ATGAAAAACAATTA
131 ATTAGTATTATTTTATTTCGAATAAACTTATGTGAAT-AGAAACAATTA
* * *
14905543 TTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATGGCCATAACTAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
* ** * **
14905608 TTGAA-TAAT-TTGA-TAAACTGATTTATTTTTTAAAACT-CCAACTTAATTTTTGAAATATTAA
66 TTGAACT--TGTTCAGTAAACAAATTTATTTTTTAAATCTACTTA-TTAATTTTTGAAATATTAA
** * * * * *
14905669 TAAAGCAATATTATTTTATTTTGGAA-AAACTTTTATGT-ACTA-AAACAGTTG
128 TAAATTAGTATTATTTTA-TTTCGAATAAAC--TTATGTGAATAGAAACAATTA
* * * * *
14905720 TTTTATGATAAAATAAAAGGTCATAATAATTTTAAATAGATAATTATTCAAATAGTCATAAGTAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
* * ** * * ** *
14905785 TTGAATTTATTTGGTAAATAGA-TT-TTTTTTAAAT-TTTTTATTAATTTTCT-AAATTTTAATA
66 TTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTACTTATTAATTTT-TGAAATATTAATA
* * * *
14905846 AATTAGTATTACTATATTTTGAATAAGAATGTA--TGAACT-GAAACAATTA
130 AATTAGTATTATTTTATTTCGAATAA-ACT-TATGTGAA-TAGAAACAATTA
* * * * * * * * * * *
14905895 TTTTTTGACTAAACAAAAGATCAAAATAATTTGGAGTAGATAATTGTTCTAATAGTCTTAACTCT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
** * * *
14905960 TTGAACTACTTC-GAAAAACACATTTA-TTTTTAAATC--CTTATTAATTTTTGAAATAGTAATA
66 TTGAACTTGTTCAG-TAAACAAATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATA
* * * * * *
14906021 AATTGGTATTATTTTA-TACTAA-AAAATTTTGTATAATAGAAACAATTA
130 AATTAGTATTATTTTATTTCGAATAAACTTATGT-GAATAGAAACAATTA
* * * * * ** * * *
14906069 TTTTATAATAAAACAAAATGTCATAACGATTTGAAATAAATAACAATTCAAATGGACATGACTAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
* * ** * * *
14906134 TTAAACTTATTTGGTAAACATATTTATTTTTTAAATCTCTAACTTATTAAATTTT-AGAATAATA
66 TTGAACTTGTTCAGTAAACAAATTTATTTTTTAAA--TCT-ACTTATTAATTTTTGA-AATATTA
* * * * *
14906198 ATAAATTAG-AATATTTTATTCCAAATAAACTTGTGTGAATAGAAACAATTG
127 ATAAATTAGTATTATTTTATTTCGAATAAACTTATGTGAATAGAAACAATTA
* ** * * *
14906249 TTTTATGACAAAACAAAAGATCATAAAAATTTGAAATATATAATTGTTCAAATAGTAATAACTAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
* * *
14906314 TTGAACTTGCTCAGTAAACAAATTTATTATTTAAATCTTTTACTTATTAATTTTAGAAATATTAA
66 TTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATC---TACTTATTAATTTTTGAAATATTAA
* * * * * * *
14906379 TAAATTAATATTATTTTATTTCAAATAAGCTTGTATGAATAGAAATAATTG
128 TAAATTAGTATTATTTTATTTCGAATAAACTTATGTGAATAGAAACAATTA
* * * * *
14906430 GTTTATGA-AAAA-AAAATTGTCATAATGATTTGAAATAAATAATTGTTCAAATAGTCAAAACTA
1 TTTTATGACAAAACAAAA-GGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTA
* * ** * * * * * * *
14906493 -TTGAA-TGCGCTCAAAAAACATATTTATTTTTAAAATTTTTATTTATTAATTTTTGGAGTTTTA
65 TTTGAACT-TGTTCAGTAAACAAATTTATTTTTTAAA--TCTACTTATTAATTTTTGAAATATTA
* *** *
14906556 ATAAATTTA-TATTATTTTATTT-GAAATAAGCTTGCATGAA-CG-AACTAATTA
127 ATAAA-TTAGTATTATTTTATTTCG-AATAAACTTATGTGAATAGAAAC-AATTA
* * *
14906607 TTTTATGACAAAACAAATA-GTCATAATGTTTTGAAATAGATAATTATTTAGATAGTCATAACTA
1 TTTTATGACAAAACAAA-AGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTA
* * * * * **
14906671 TTTAAACTTGTTCAGTAAATAGATTTATTTTTTTAATTCTCTTACTCATTAATTTTTGGTATATT
65 TTTGAACTTGTTCAGTAAACAAATTTA-TTTTTTAA--ATC-TACTTATTAATTTTTGAAATATT
* * * * * *
14906736 AATAAATTAG-AGCTATTTTATTTCAAATAAGCTTATGTTAATTGAAACCATTA
126 AATAAATTAGTA-TTATTTTATTTCGAATAAACTTATGTGAATAGAAACAATTA
* * * * * *
14906789 TTTTATTACAAAATAAAAGGTCACAATTATTTGAAATAGATAATTATTCAAATAGTCTTGACTAT
1 TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
** * * **
14906854 TTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTTTCACTTATTAATTGTCAAAATATTAA
66 TTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATC--T-ACTTATTAATTTTTGAAATATTAA
* * * * * * *
14906919 TAAATTAATATTATTTTAATTCGAATAACCTTGTATGAACA-AAGATAATTA
128 TAAATTAGTATTATTTTATTTCGAATAAACTTATGTGAATAGAA-ACAATTA
* *
14906970 TTTTATTACAAAACAAAAAGTCATAAT
1 TTTTATGACAAAACAAAAGGTCATAAT
14906997 AATTCTGTTT
Statistics
Matches: 1421, Mismatches: 312, Indels: 157
0.75 0.17 0.08
Matches are distributed among these distances:
171 1 0.00
172 3 0.00
173 5 0.00
174 87 0.06
175 148 0.10
176 49 0.03
177 235 0.17
178 116 0.08
179 78 0.05
180 306 0.22
181 266 0.19
182 124 0.09
183 3 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (178 bp):
TTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTAT
TTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTACTTATTAATTTTTGAAATATTAATAA
ATTAGTATTATTTTATTTCGAATAAACTTATGTGAATAGAAACAATTA
Found at i:14906082 original size:19 final size:19
Alignment explanation
Indices: 14906028--14906084 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
14906018 ATAAATTGGT
*
14906028 ATTATTTTATACTAAAA-A
1 ATTATTTTATAATAAAACA
*
14906046 ATT-TTGTATAATAGAAACA
1 ATTATTTTATAATA-AAACA
14906065 ATTATTTTATAATAAAACA
1 ATTATTTTATAATAAAACA
14906084 A
1 A
14906085 AATGTCATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 8 0.24
18 6 0.18
19 10 0.30
20 9 0.27
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (19 bp):
ATTATTTTATAATAAAACA
Found at i:14907053 original size:16 final size:17
Alignment explanation
Indices: 14907021--14907053 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14907011 AACAATTTCA
14907021 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
14907039 AATAATTAT-CTATTT
1 AATAATTATACTATTT
14907054 CAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:14907336 original size:181 final size:181
Alignment explanation
Indices: 14907131--14907657 Score: 456
Period size: 181 Copynumber: 2.9 Consensus size: 181
14907121 AAAATAATAT
**
14907131 TAATTTATTAATATTTTAAAAATTAATACA-TAAGAGATTTAAAAAATAAATTTGTTTGCCAT-A
1 TAATTTATTAATATTTTAAAAATTAATA-AGTAAGAGATTTAAAAAATAAACCT-TTTGCCATGA
* *** * * * *
14907194 CCAGTTCAGTTAGTTATAACTATTTGACCAAATATTTATTTTAAATCGTTATGACCATTTGTTTT
64 CCAGTGCAAACAATTATAACTATTTGACCAAATATCTATTTCAAATCATTATGACCATTTGTTTT
* * * *
14907259 ATCATAAAACAATTGTTTCTATTCATATAATCTTATTCGGAACAA-AGTAATGC
129 ATCACAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAACAACA-TAATGC
* * ** ***
14907312 TAATTTATTAATATTTTGAAAATTAATAAGTAATG-GATTTAGAAAATGTACCTTTTGGTTTGAC
1 TAATTTATTAATATTTTAAAAATTAATAAGTAA-GAGATTTAAAAAATAAACCTTTTGCCATGAC
* * * * * *
14907376 TAGTGCAAACAATTATGACTATTTGATCAATTATCTATTTCAAATCATTATGACCTTTTGTTTTC
65 CAGTGCAAACAATTATAACTATTTGACCAAATATCTATTTCAAATCATTATGACCATTTGTTTTA
* * * *
14907441 TCACAAAACAATTGTTTTTGTTCATACAAGCTTATTCAGAATAACATAATTC
130 TCACAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAACAACATAATGC
** * * * *
14907493 TAATTTATTAATATTCCAAAAATTAATAAGTGAGAGATTTAAAAAATGAATCTATTT-AC-TGAA
1 TAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAACCT-TTTGCCATG-A
* * * ** * * *** * * *
14907556 CAAGTTCAAATAATTATGGCTATTTGAACAATTATCTAGTTT-AAATTGCTATAACCTTTTGTAT
64 CCAGTGCAAACAATTATAACTATTTGACCAAATATCTA-TTTCAAATCATTATGACCATTTGTTT
* * * *
14907620 TGTCATAAAATAATTTTTTCTATTCATACAAGCTTATT
128 TATCACAAAACAATTGTTTCTATTCATACAAGCTTATT
14907658 TCGAATTTGT
Statistics
Matches: 282, Mismatches: 56, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
180 9 0.03
181 265 0.94
182 8 0.03
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (181 bp):
TAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAACCTTTTGCCATGACC
AGTGCAAACAATTATAACTATTTGACCAAATATCTATTTCAAATCATTATGACCATTTGTTTTAT
CACAAAACAATTGTTTCTATTCATACAAGCTTATTCAGAACAACATAATGC
Found at i:14908114 original size:181 final size:181
Alignment explanation
Indices: 14907684--14909250 Score: 1190
Period size: 181 Copynumber: 8.8 Consensus size: 181
14907674 AATAATTTTG
* * * *
14907684 AATAGTTATGACTATTGGAACAATTATTTATTTCAAATCATTATGACTTTTTGTTTTATCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * ** ** * *
14907749 ACAATTATTTTTGTTCATATTAGCTTACGCGAATTAAAATAATATTAATTTATTAATATT-TCAA
66 ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCT-AA
* * * *
14907813 CAATTAATAAG-TAGAAGATTTAAAAAA-ATATATGTTTACCAAACAAGTTCA
130 AAATTAATAAGTTAG-AGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
** * * * * * * *
14907864 AATAG-TAAAACTATCTAAATAATTATCTATTTCAAATCATTATAACCTTTTATTTAGCCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * * * * * * * *
14907928 ACAATTATATCAATTCATATAGGCTTATTCGAAATAGAGTAATACTAACTTATTACTGTTCTAAA
66 ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCTAAA
* *
14907993 AATTAATGAGTTAGAGATTTAAAAAATGAATCTATTTACCAAACAAGTTCA
131 AATTAATAAGTTAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
** *
14908044 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGCCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * *
14908109 ACAATTGTTTTTGTTCATACAAGCTTATTTC-AAATAAAATAATA-TAAATTTACTAATATTCCA
66 ACAATTGTTTCTATTCATACAAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATATTCTA
* * * * * * * **
14908172 AAGATTAATAAG-TAAAAATATATAAAATAAATTTGTTT-TTAAACACA-TTCAA
129 AAAATTAATAAGTTAGAGATTTAAAAAATAAATCTATTTACCAAACA-AGTTC-A
* * *
14908224 AATAATTATGACCATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTTTTTTTTGTCATA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC--TTTTGTTTTGTCATA
* * * *
14908289 AACCAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAATTTATTAAAATT-TC
64 AAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCT-
* * * * * ** ***
14908353 AAAAATTAATAAGTAAAATATTTAAAAAAATAAATTTGTTTACTGAGTGAGTTCA
128 AAAAATTAATAAGTTAGAGATTT-AAAAAATAAATCTATTTACCAAACAAGTTCA
* * * * * ** *
14908408 AATAATTATGACTATTTAAATAGTTATTTATTTCAAATTGTTATGATCC-TTTGTTTTGTAATAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CCTTTTGTTTTGTCATAA
** * * * * *
14908472 AACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAAAAATAATTTATTAATATTTTGA
65 AACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCTAA
* * * * *
14908537 AAATTAAT-A---AGAGATTTAAAAACTATATCTCTTTATCAGACCAA-TTCA
130 AAATTAATAAGTTAGAGATTTAAAAAATAAATCTATTTACCA-AACAAGTTCA
* * * ** *
14908585 AATAGTTATGACTATTTGAATAAGTATCTATCTCAAATCGGTATGATC-TTTGTTTTGTCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * * * ** *
14908649 ACAATTGTTTCTATCCATAGAAACTTATTC-AAAGTAAAATATTGCTAAACTAATAATATTCT-A
66 ACAATTGTTTCTATTCATACAAGCTTATTCGAAA-TAAAATAATACTAATTTATTAATATTCTAA
* *
14908712 AAATTAATAAGTAAGAGATTTAAAAAATAAATGTA-TT-------AAG----
130 AAATTAATAAGTTAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
* * * * * *
14908752 ACT-GTTAT-A--A--TAA-C---TATCTGTTTCAAATCATTTTGACCTTTTGGTTGGTCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * * * *
14908807 ATAATTG-TTC-ATTTCATACATGCTTATTTGAAATAAAATAATACTATTTTATTAACATTCAAA
66 ACAATTGTTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCTAA
** * * * *
14908870 AAATTAATAAGCAAG-GAATTAAAAAATAAAT-TAGTTTACTAAACAAATTTA
130 AAATTAATAAGTTAGAGATTTAAAAAATAAATCTA-TTTACCAAACAAGTTCA
* * * *
14908921 AATAGTTATGACTATTTAAACAATTATC-ATTTTAAAATCGTTATGACCTTTTGTTTTATCATAA
1 AATAGTTATGACTATTTGAACAATTATCTA-TTTCAAATCATTATGACCTTTTGTTTTGTCATAA
* * * * * * * *
14908985 AAAAATTGTTTC-ATTTCATAAAAGCTTATCCAAAATAAAATAATATTACTTGATTTATATT-TC
65 AACAATTGTTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCT-
* * * * *
14909048 AAAAATTAAGAAGTTGGAGATTTAAAACATAAATC-ATTTTATCGAATCAA-TTCA
128 AAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTA-TTTA-CCAAACAAGTTCA
* * * *
14909102 AATAGTTATGGCCATTTGAACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGTCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * *
14909167 ACAATTGTTTTTCA-TCATACAAGCCTAATTAG-AATAAAATAATACTAGTTTATTAATATT-TC
66 ACAATTGTTTCT-ATTCATACAAG-CTTATTCGAAATAAAATAATACTAATTTATTAATATTCT-
14909229 AAAAATTAATAAG-TAGGAGATT
128 AAAAATTAATAAGTTA-GAGATT
14909251 ATCTGTTTAC
Statistics
Matches: 1095, Mismatches: 228, Indels: 127
0.76 0.16 0.09
Matches are distributed among these distances:
156 3 0.00
157 68 0.06
158 40 0.04
161 2 0.00
163 1 0.00
165 3 0.00
166 5 0.00
167 2 0.00
169 2 0.00
170 7 0.01
171 1 0.00
173 1 0.00
175 15 0.01
176 65 0.06
177 56 0.05
178 10 0.01
179 179 0.16
180 156 0.14
181 243 0.22
182 163 0.15
183 9 0.01
184 57 0.05
185 7 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCTAAA
AATTAATAAGTTAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
Found at i:14908368 original size:182 final size:180
Alignment explanation
Indices: 14907684--14908743 Score: 921
Period size: 182 Copynumber: 5.9 Consensus size: 180
14907674 AATAATTTTG
* * * * *
14907684 AATAGTTATGACTATTGGAACAATTATTTATTTCAAATCATTATGACTTTTTGTTTTATCATAAA
1 AATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * ** ** * * *
14907749 ACAATTATTTTTGTTCATATTAGCTTACGCGAATTAAAATAATATTAATTTATTAATATTTCAAC
66 ACAATTGTTTCTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAA
* * *
14907814 AATTAATAAGTAGAAGATTTAAAAAA-ATATATGTTTACCAAACAAGTTCA
131 AATTAATAAGTA-AAAATTTAAAAAATAAATTTGTTTACCAAACAAGTTCA
* ** * * * * * * *
14907864 AAT-AGTAAAACTATCTAAATAATTATCTATTTCAAATCATTATAACCTTTTATTTAGCCATAAA
1 AATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * * * * * * * *
14907928 ACAATTATATCAATTCATATAGGCTTATTCGAAATAGAGTAATACTAACTTATTACT-GTTCTAA
66 ACAATTGTTTCTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTC-AA
* * * * * *
14907992 AAATTAATGAGTTAGAGATTTAAAAAATGAATCTATTTACCAAACAAGTTCA
130 AAATTAATAAG-TAAAAATTTAAAAAATAAATTTGTTTACCAAACAAGTTCA
* ** *
14908044 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGCCATAAA
1 AATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * * *
14908109 ACAATTGTTTTTGTTCATACAAGCTTATTTC-AAATAAAATAATA-TAAATTTACTAATATTCCA
66 ACAATTGTTTCTATTCATAAAAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATATTTCA
* * * **
14908172 AAGATTAATAAGTAAAAATATATAAAATAAATTTGTTT-TTAAACACA-TTCAA
129 AAAATTAATAAGTAAAAATTTAAAAAATAAATTTGTTTACCAAACA-AGTTC-A
* *
14908224 AATAATTATGACCATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTTTTTTTTGTCATA
1 AATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACC--TTTTGTTTTGTCATA
* * *
14908289 AACCAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAATTTATTAAAATTTCA
64 AAACAATTGTTTCTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCA
** ***
14908354 AAAATTAATAAGTAAAATATTTAAAAAAATAAATTTGTTTACTGAGTGAGTTCA
129 AAAATTAATAAGTAAAA-ATTT-AAAAAATAAATTTGTTTACCAAACAAGTTCA
* * * * ** *
14908408 AATAATTATGACTATTTAAATAGTTATTTATTTCAAATTGTTATGATCC-TTTGTTTTGTAATAA
1 AATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CCTTTTGTTTTGTCATAA
* * * * **
14908472 AACAATTGTTTCTATTCATACAAA-ATTATTCAAAATAAAATAAAAATAATTTATTAATATTTTG
65 AACAATTGTTTCTATTCATA-AAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCA
* * * * * * *
14908536 AAAATTAATAAG---AGATTTAAAAACTATATCTCTTTATCAGACCAA-TTCA
129 AAAATTAATAAGTAAAAATTTAAAAAATAAATTTGTTTACCA-AACAAGTTCA
* * * * ** *
14908585 AATAGTTATGACTATTTGAATAAGTATCTATCTCAAATCGGTATGATC-TTTGTTTTGTCATAAA
1 AATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
* * * ** * *
14908649 ACAATTGTTTCTATCCATAGAAA-CTTATTC-AAAGTAAAATATTGCTAAACTAATAATA-TTCT
66 ACAATTGTTTCTATTCATA-AAAGCTTATTCGAAA-TAAAATAATACTAATTTATTAATATTTCA
*
14908711 AAAATTAATAAGTAAGAGATTTAAAAAATAAAT
129 AAAATTAATAAGTAA-AAATTTAAAAAATAAAT
14908744 GTATTAAGAC
Statistics
Matches: 706, Mismatches: 149, Indels: 51
0.78 0.16 0.06
Matches are distributed among these distances:
175 17 0.02
176 60 0.08
177 56 0.08
178 9 0.01
179 136 0.19
180 94 0.13
181 101 0.14
182 162 0.23
183 7 0.01
184 57 0.08
185 7 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
AATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAA
ACAATTGTTTCTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAA
AATTAATAAGTAAAAATTTAAAAAATAAATTTGTTTACCAAACAAGTTCA
Found at i:14908463 original size:364 final size:359
Alignment explanation
Indices: 14907661--14908743 Score: 1027
Period size: 360 Copynumber: 3.0 Consensus size: 359
14907651 GCTTATTTCG
* ** * **
14907661 AATTTGTTTACTGAATAATTTTGAATAGTTATGACTATTGGAACAATTATTTATTTCAAATCATT
1 AATTTGTTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATTGTT
* * * ** ** * *
14907726 ATGACTTTTTGTTTTATCATAAAACAATTATTTTTGTTCATATTAGCTTACGCGAATTAAAATAA
66 ATGAC-CTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAA
* *
14907791 TATTAATTTATTAATATTTCAACAATTAATAAGTAGAAGATT-TAAAA-AAATATATGTTTACCA
130 TATAAATTTATTAATATTTCAA-AATTAATAAGTA-AAGATTATAAAATAAAT-T-TGTTTATCA
* ** * * *
14907854 AACA-AGTTCAAAT-AGTAAAACTATCTAAATAATTATCTATTTCAAATCATTATAACC-TTTTA
191 AACACA-TTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTTA
* * * * * * * * * * *
14907916 TTTAGCCATAAAACAATTATATCAATTCATATAGGCTTATTCGAAATAGAGTAATACTAACTTAT
255 TTTTGTCATAAAACAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAAATTAT
* * * *
14907981 T--ACTGTTCTAAAAATTAATGAGTTAGAGATTTAAAAAATG
320 TAAAAT-TTC-AAAAATTAATAAGTAAGAGATTTAAAAAATA
* * ** * *
14908021 AATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTT
1 AATTTGTTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATTGTT
*
14908086 ATGACCTTTTGTTTTGCCATAAAACAATTGTTTTTGTTCATACAAGCTTATTTC-AAATAAAATA
66 ATGACC-TTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTA-TTCAAAATAAAATA
* * * *
14908150 ATATAAATTTACTAATATTCCAAAGATTAATAAGTAAAAATATATAAAATAAATTTGTTT-TTAA
129 ATATAAATTTATTAATATTTCAAA-ATTAATAAGTAAAGAT-TATAAAATAAATTTGTTTATCAA
* * *
14908214 ACACATTCAAAATAATTATGACCATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTTTT
192 ACACATTC-AAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACC-TTTTTA
* *
14908279 TTTTGTCATAAACCAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAATTTAT
255 TTTTGTCATAAAACAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAAATTAT
* *
14908344 TAAAATTTCAAAAATTAATAAGTAAAATATTTAAAAAAATA
320 TAAAATTTCAAAAATTAATAAGTAAGAGATTT-AAAAAATA
* * * * * *
14908385 AATTTGTTTACTGAGTGAGTTCAAATAATTATGACTATTTAAATAGTTATTTATTTCAAATTGTT
1 AATTTGTTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATTGTT
* * * **
14908450 ATGATCCTTTGTTTTGTAATAAAACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAA
66 ATGA-CCTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAA
* * * * *
14908515 -AAATAATTTATTAATATTTTGAAAATTAATAAG---AGATT-TAAAAACTATATCTCTTTATCA
130 TATA-AATTTATTAATA-TTTCAAAATTAATAAGTAAAGATTAT-AAAA-TAAATTTGTTTATCA
* * * * ** * *
14908575 GAC-CAATTCAAATAGTTATGACTATTTGAATAAGTATCTATCTCAAATCGGTATGA--TCTTTG
191 AACAC-ATTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTTA
* * * * *
14908637 TTTTGTCATAAAACAATTGTTTCTATCCATAGAAA-CTTA-TTCAAAGTAAAATATTGCTAAACT
255 TTTTGTCATAAAACAATTGTTTCTATTCATA-AAAGCTTATTTGAAA-TAAAATAATACTAAATT
* * *
14908700 AATAATA-TTCTAAAATTAATAAGTAAGAGATTTAAAAAATA
318 ATTAAAATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATA
14908741 AAT
1 AAT
14908744 GTATTAAGAC
Statistics
Matches: 596, Mismatches: 103, Indels: 52
0.79 0.14 0.07
Matches are distributed among these distances:
356 11 0.02
357 28 0.05
358 55 0.09
359 17 0.03
360 152 0.26
361 95 0.16
362 12 0.02
363 82 0.14
364 135 0.23
365 9 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (359 bp):
AATTTGTTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATTGTT
ATGACCTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTCAAAATAAAATAAT
ATAAATTTATTAATATTTCAAAATTAATAAGTAAAGATTATAAAATAAATTTGTTTATCAAACAC
ATTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTTATTTTGT
CATAAAACAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAAATTATTAAAAT
TTCAAAAATTAATAAGTAAGAGATTTAAAAAATA
Found at i:14908708 original size:176 final size:176
Alignment explanation
Indices: 14908404--14908722 Score: 435
Period size: 176 Copynumber: 1.8 Consensus size: 176
14908394 ACTGAGTGAG
* * * *
14908404 TTCAAATAATTATGACTATTTAAATAGTTATTTATTTCAAATTGTTATGATCCTTTGTTTTGTAA
1 TTCAAATAATTATGACTATTTAAATAGTTATCTATCTCAAATCGGTATGATCCTTTGTTTTGTAA
* ** * *
14908469 TAAAACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAAAAATAATTTATTAATATTT
66 TAAAACAATTGTTTCTATCCATACAAAATTATTCAAAATAAAATAAAAATAAACTAATAATATTC
14908534 TGAAAATTAATAAGAGATTTAAAAACTATATCTCTTTATCAGACCAA
131 T-AAAATTAATAAGAGATTTAAAAACTATATCTCTTTATCAGACCAA
* * *
14908581 TTCAAATAGTTATGACTATTTGAATAAG-TATCTATCTCAAATCGGTATGAT-CTTTGTTTTGTC
1 TTCAAATAATTATGACTATTTAAAT-AGTTATCTATCTCAAATCGGTATGATCCTTTGTTTTGTA
* * * ****
14908644 ATAAAACAATTGTTTCTATCCATAGAAACTTATTCAAAGTAAAATATTGCTAAACTAATAATATT
65 ATAAAACAATTGTTTCTATCCATACAAAATTATTCAAAATAAAATAAAAATAAACTAATAATATT
14908709 CTAAAATTAATAAG
130 CTAAAATTAATAAG
14908723 TAAGAGATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
175 12 0.10
176 66 0.54
177 42 0.34
178 2 0.02
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (176 bp):
TTCAAATAATTATGACTATTTAAATAGTTATCTATCTCAAATCGGTATGATCCTTTGTTTTGTAA
TAAAACAATTGTTTCTATCCATACAAAATTATTCAAAATAAAATAAAAATAAACTAATAATATTC
TAAAATTAATAAGAGATTTAAAAACTATATCTCTTTATCAGACCAA
Found at i:14911230 original size:182 final size:178
Alignment explanation
Indices: 14910796--14911856 Score: 738
Period size: 182 Copynumber: 5.9 Consensus size: 178
14910786 CCATTTCAAT
* * * * ** *
14910796 AATTATCTATTTGAAATTGTTCTTACCTTTTGTTTGGTCATATGACAATTGTTTTTGA-TCATAC
1 AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATT-TTTCT-ATTCATAC
* * * *
14910860 -AAGCTTATTTGGAATAAAATAATACTAATTTATTAATCTTTCAAAACTTAATAAGTAAGAGATT
64 TAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAATAA-TAAAAGATT
* * *
14910924 TAAAAAATAAATTTGTTTACAAACCAATTCAAATAGTTATGACTATT-AGAGC
127 TAAAAAATAAAATTGTTTACAAACTAGTTCAAATAGTTATGACTATTGA-AGC
* * * * * * * *
14910976 AGTTGTATACTTCAAATTGTTATAACCTTTTGTTTTGTCATAAAACAGTTATTTCTGTTCACAC-
1 AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATT-TTTCTATTCATACT
* * * *
14911040 AAGCTTATTTGAAATAAAATAAAACTAATCTAATAATATTCTGAAAATTAATAACTAAAAGATTT
65 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TAAAAATTAATAA-TAAAAGATTT
** **
14911105 AAAAAATAAAATTGTTTATCAAACTAGTTCAAATAGTTAAAACTATATGAATA
128 AAAAAATAAAATTGTTTA-CAAACTAGTTCAAATAGTTATGACTAT-TGAAGC
* *
14911158 AATTATCTATTTCAAATCT-TTATAACCTTTTGTTTTGTCATAAAACAATATTTTCAATTCATAC
1 AATTATCTATTTCAAAT-TGTTATGACCTTTTGTTTTGTCATAAAACAAT-TTTTCTATTCATAC
* * * *
14911222 T-AGCTTATTT-AGAATAAAATAA-AATAAATTTATTAAAATTTCAAAAA-T--TAATAAGAGAA
64 TAAGCTTATTTGA-AATAAAATAATACT-AATTTATTAATATTT-AAAAATTAATAATAAAAGAT
* * * *
14911281 TTAAAAAAT--AATTCTATTAACCTAACCAGTTCAAATAATTATGACTATGTGAA-C
126 TTAAAAAATAAAATTGT-TT-A-CAAACTAGTTCAAATAGTTATGACTAT-TGAAGC
* * *
14911335 AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAATTAATGTTTT-TGTTTATA-
1 AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAA-CAAT-TTTTCTATTCATAC
* * * ** *
14911398 TAAGTTTGTTTGGAATAAAATAATACTAATCCATTAATATTTCAAAAATTAAT-A-AAAA-TTTT
64 TAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAATAATAAAAGATTT
* * * * *
14911460 AAAAAA-CAAATCTATTTATCAAACTGGTTC-AA-A-TTAAGACTATTTAAGC
128 AAAAAATAAAAT-TGTTTA-CAAACTAGTTCAAATAGTTATGACTATTGAAGC
* ** * * * * * ** * *
14911509 AATTATTTATTTCAAATCATTATGACTTTTTGTTCTGTTATAAGATAACAGTTTCTATTTAT-TT
1 AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAA-TTTTTCTATTCATACT
* * * * * * *
14911573 AAGCTTA-TTCAGATTAAAATAATACAAATTTATTAATATTTTGACAATTAATAAGTAAAAAATA
65 AAGCTTATTTGA-AATAAAATAATACTAATTTATTAATA-TTTAAAAATTAATAA-TAAAAGATT
* * * * *
14911637 TAAAAAATTAAATATGTTTACTAAACTAGATCAAACAGTCATGACTATTTGAA-T
127 TAAAAAATAAAAT-TGTTTAC-AAACTAGTTCAAATAGTTATGACTA-TTGAAGC
* * ** ** * * * * *
14911691 AGTTATTTATTTTTAATCATTATGAGCTTTTCTTCTGTCATAAAAAAATTATTTCAATTCATA-T
1 AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATT-TTTCTATTCATACT
* * *
14911755 AAGCTTATTCGAAATAAAATAATA-TCAAGTTATTAATATTTTAAAAATTAATAATTAAGAGATT
65 AAGCTTATTTGAAATAAAATAATACT-AATTTATTAATA-TTTAAAAATTAATAA-TAAAAGATT
* * * *
14911819 TAAAAAATAAATTTATTTACCGAACAAGTTCAAATAGT
127 TAAAAAATAAAATTGTTTA-CAAACTAGTTCAAATAGT
14911857 CATGTTAAAT
Statistics
Matches: 696, Mismatches: 140, Indels: 89
0.75 0.15 0.10
Matches are distributed among these distances:
173 11 0.02
174 90 0.13
175 5 0.01
176 9 0.01
177 105 0.15
178 69 0.10
179 23 0.03
180 122 0.18
181 48 0.07
182 205 0.29
183 9 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (178 bp):
AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTTTTCTATTCATACTA
AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTAAAAATTAATAATAAAAGATTTAAA
AAATAAAATTGTTTACAAACTAGTTCAAATAGTTATGACTATTGAAGC
Found at i:14911962 original size:22 final size:22
Alignment explanation
Indices: 14911930--14911973 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14911920 ATTTAATTGT
**
14911930 ATATAGATTATCTATATTTATA
1 ATATAGATTATAAATATTTATA
*
14911952 ATATAGTTTATAAATATTTATA
1 ATATAGATTATAAATATTTATA
14911974 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (22 bp):
ATATAGATTATAAATATTTATA
Found at i:14911978 original size:17 final size:18
Alignment explanation
Indices: 14911953--14911986 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14911943 ATATTTATAA
14911953 TATAGTTT-ATAAATATT
1 TATAGTTTAATAAATATT
*
14911970 TATATTTTAATAAATAT
1 TATAGTTTAATAAATAT
14911987 AAATAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TATAGTTTAATAAATATT
Found at i:14912170 original size:15 final size:13
Alignment explanation
Indices: 14912155--14912209 Score: 71
Period size: 12 Copynumber: 4.5 Consensus size: 13
14912145 ATAGTATTAA
14912155 TAATAA-TATAAT
1 TAATAATTATAAT
*
14912167 TAATAATTATAAA
1 TAATAATTATAAT
14912180 T-ATAATTATAAT
1 TAATAATTATAAT
*
14912192 TAATAA-TACAAT
1 TAATAATTATAAT
14912204 TAATAA
1 TAATAA
14912210 CATATTATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
12 28 0.74
13 10 0.26
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATAATTATAAT
Found at i:14912172 original size:12 final size:12
Alignment explanation
Indices: 14912155--14912246 Score: 68
Period size: 12 Copynumber: 7.8 Consensus size: 12
14912145 ATAGTATTAA
14912155 TAATAATATAAT
1 TAATAATATAAT
*
14912167 TAATAATTATAAA
1 TAATAA-TATAAT
14912180 T-ATAATTATAAT
1 TAATAA-TATAAT
*
14912192 TAATAATACAAT
1 TAATAATATAAT
*
14912204 TAATAACAT-AT
1 TAATAATATAAT
*
14912215 T-AT-ATATTAT
1 TAATAATATAAT
*
14912225 ATAATATATGTAAT
1 -TAATA-ATATAAT
14912239 T-ATAATAT
1 TAATAATAT
14912247 TTAAACTAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
9 3 0.05
10 4 0.06
11 7 0.11
12 34 0.53
13 11 0.17
14 5 0.08
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.43
Consensus pattern (12 bp):
TAATAATATAAT
Found at i:14912178 original size:6 final size:6
Alignment explanation
Indices: 14912152--14912198 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
14912142 ATTATAGTAT
* *
14912152 TAATAA TAA-TA TAATTAA TAATTA TAAATA TAATTA TAATTAA TAAT
1 TAATTA TAATTA TAATT-A TAATTA TAATTA TAATTA TAATT-A TAAT
14912199 ACAATTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
5 4 0.11
6 20 0.57
7 11 0.31
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (6 bp):
TAATTA
Found at i:14912183 original size:19 final size:19
Alignment explanation
Indices: 14912155--14912209 Score: 78
Period size: 18 Copynumber: 2.9 Consensus size: 19
14912145 ATAGTATTAA
14912155 TAATAATATAATTAATAAT
1 TAATAATATAATTAATAAT
14912174 T-ATAAATATAATT-ATAAT
1 TAAT-AATATAATTAATAAT
*
14912192 TAATAATACAATTAATAA
1 TAATAATATAATTAATAA
14912210 CATATTATAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 16 0.50
19 16 0.50
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
TAATAATATAATTAATAAT
Found at i:14912209 original size:25 final size:25
Alignment explanation
Indices: 14912153--14912209 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
14912143 TTATAGTATT
*
14912153 AATAATAATATAATTAATAATTATA
1 AATAATAATATAATTAATAATTACA
14912178 AAT-ATAATTATAATTAATAA-TACA
1 AATAATAA-TATAATTAATAATTACA
*
14912202 ATTAATAA
1 AATAATAA
14912210 CATATTATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (25 bp):
AATAATAATATAATTAATAATTACA
Found at i:14912220 original size:37 final size:36
Alignment explanation
Indices: 14912155--14912225 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
14912145 ATAGTATTAA
* *
14912155 TAATAATATAATTAATAATTATAAATATAATTATAAT
1 TAATAATACAATTAATAAATATAAATAT-ATTATAAT
*
14912192 TAATAATACAATTAATAACATAT-TATATATTATA
1 TAATAATACAATTAATAA-ATATAAATATATTATA
14912226 TAATATATGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 6 0.20
37 21 0.70
38 3 0.10
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (36 bp):
TAATAATACAATTAATAAATATAAATATATTATAAT
Found at i:14912488 original size:21 final size:21
Alignment explanation
Indices: 14912434--14912529 Score: 67
Period size: 21 Copynumber: 4.5 Consensus size: 21
14912424 TCATAGTCAT
**
14912434 TTATTTAT-TTAT-ATAACAA
1 TTATTTATATTATAATATTAA
*
14912453 TTATATTA-ATAATAATATTAA
1 TTAT-TTATATTATAATATTAA
14912474 TTATTTATATTATAATTATATAA
1 TTATTTATATTATAA-TAT-TAA
14912497 -TATTATTATATT-TACTATATTAA
1 TTA-T-TTATATTATA--ATATTAA
14912520 TTATTTATAT
1 TTATTTATAT
14912530 ATTGTTAATA
Statistics
Matches: 62, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
19 4 0.06
20 9 0.15
21 15 0.24
22 11 0.18
23 10 0.16
24 12 0.19
25 1 0.02
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TTATTTATATTATAATATTAA
Found at i:14912491 original size:15 final size:15
Alignment explanation
Indices: 14912471--14912529 Score: 59
Period size: 15 Copynumber: 3.9 Consensus size: 15
14912461 ATAATAATAT
14912471 TAATTATTTATATTA
1 TAATTATTTATATTA
*
14912486 TAATTATATAATATTA
1 TAATTAT-TTATATTA
*
14912502 TTA-TATTTACTA-TA
1 TAATTATTTA-TATTA
14912516 TTAATTATTTATAT
1 -TAATTATTTATAT
14912530 ATTGTTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
14 4 0.11
15 16 0.46
16 15 0.43
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.58
Consensus pattern (15 bp):
TAATTATTTATATTA
Found at i:14912494 original size:24 final size:24
Alignment explanation
Indices: 14912453--14912529 Score: 88
Period size: 24 Copynumber: 3.2 Consensus size: 24
14912443 TATATAACAA
*
14912453 TTATATTAATAATAATATTAATTAT
1 TTATATT-ATAATTATATTAATTAT
*
14912478 TTATATTATAATTATATAATATTA-
1 TTATATTATAATTATATTA-ATTAT
*
14912502 TTATATT-T-ACTATATTAATTAT
1 TTATATTATAATTATATTAATTAT
14912524 TTATAT
1 TTATAT
14912530 ATTGTTAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
21 4 0.09
22 13 0.28
23 1 0.02
24 17 0.37
25 11 0.24
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (24 bp):
TTATATTATAATTATATTAATTAT
Found at i:14912763 original size:14 final size:13
Alignment explanation
Indices: 14912730--14912794 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 13
14912720 AAATTTAATC
*
14912730 TATTAACAATTATT
1 TATTAATAATTA-T
14912744 TATTAATAATTAT
1 TATTAATAATTAT
14912757 TAGTTAATAAGTTAT
1 TA-TTAATAA-TTAT
* *
14912772 AATAATACTAATTAT
1 --TATTAATAATTAT
14912787 TA-TAATAA
1 TATTAATAA
14912795 CTAATTGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 5 0.12
13 5 0.12
14 18 0.42
15 8 0.19
16 5 0.12
17 2 0.05
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (13 bp):
TATTAATAATTAT
Found at i:14912786 original size:15 final size:16
Alignment explanation
Indices: 14912768--14912800 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
14912758 AGTTAATAAG
14912768 TTATAATAAT-ACTAA
1 TTATAATAATAACTAA
*
14912783 TTATTATAATAACTAA
1 TTATAATAATAACTAA
14912799 TT
1 TT
14912801 GAAATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATAATAATAACTAA
Found at i:14913119 original size:24 final size:24
Alignment explanation
Indices: 14913092--14913139 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14913082 TTGTCTTATT
* *
14913092 ATTTAATTATT-TTGTTATTATAAA
1 ATTTAAATATTATTATTATT-TAAA
14913116 ATTTAAATATTATTATTATTTAAA
1 ATTTAAATATTATTATTATTTAAA
14913140 TAAATAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTAAATATTATTATTATTTAAA
Found at i:14914708 original size:16 final size:16
Alignment explanation
Indices: 14914677--14914720 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
14914667 ACATAATTGT
14914677 TATAATTAAATAATAA
1 TATAATTAAATAATAA
* * *
14914693 TCTAATTTAATTATAA
1 TATAATTAAATAATAA
14914709 TATAATATAAAT
1 TATAAT-TAAAT
14914721 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 18 0.82
17 4 0.18
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAATTAAATAATAA
Found at i:14914864 original size:13 final size:13
Alignment explanation
Indices: 14914848--14914872 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14914838 AATACAAATA
14914848 AATCTAATTATTT
1 AATCTAATTATTT
14914861 AATCTAATTATT
1 AATCTAATTATT
14914873 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:14915138 original size:13 final size:14
Alignment explanation
Indices: 14915120--14915152 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
14915110 AATTAAATTA
14915120 TATAATATACA-AT
1 TATAATATACATAT
14915133 TATAAT-TACATAT
1 TATAATATACATAT
14915146 TATAATA
1 TATAATA
14915153 ATTAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (14 bp):
TATAATATACATAT
Found at i:14915139 original size:21 final size:20
Alignment explanation
Indices: 14915109--14915149 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14915099 TATATATGTC
*
14915109 CAATTAAATTATATAATATA
1 CAATTAAATTACATAATATA
*
14915129 CAATTATAATTACATATTATA
1 CAATTA-AATTACATAATATA
14915150 ATAATTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (20 bp):
CAATTAAATTACATAATATA
Found at i:14915261 original size:18 final size:19
Alignment explanation
Indices: 14915238--14915273 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14915228 AATTATTATA
14915238 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
14915256 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
14915274 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:14916022 original size:22 final size:21
Alignment explanation
Indices: 14915981--14916023 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14915971 AATTTATTAG
**
14915981 TAATTTATTAATAAGTAAAAT
1 TAATTTATTAATAACAAAAAT
14916002 TAATATTATTAATAACAAAAAT
1 TAAT-TTATTAATAACAAAAAT
14916024 ATTTGCAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAATTTATTAATAACAAAAAT
Found at i:14918610 original size:21 final size:22
Alignment explanation
Indices: 14918566--14918611 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
14918556 AAATTGATTA
*
14918566 TTAAAATTAAATAAAATAATAT
1 TTAAAATTAAATAAAATAAGAT
* *
14918588 TTAAAA-TAAATACAATTAGAT
1 TTAAAATTAAATAAAATAAGAT
14918609 TTA
1 TTA
14918612 TAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAAATTAAATAAAATAAGAT
Found at i:14919141 original size:15 final size:16
Alignment explanation
Indices: 14919114--14919168 Score: 51
Period size: 15 Copynumber: 3.4 Consensus size: 16
14919104 ATAATATTTA
14919114 ATAA-TTTAGTATAAT
1 ATAATTTTAGTATAAT
*
14919129 ATAATTTTA-TATAAG
1 ATAATTTTAGTATAAT
*
14919144 ACTACATTTTATTATAAT
1 A-TA-ATTTTAGTATAAT
*
14919162 ATTATTT
1 ATAATTT
14919169 AATTATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 10 0.30
16 10 0.30
17 7 0.21
18 6 0.18
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (16 bp):
ATAATTTTAGTATAAT
Found at i:14919564 original size:27 final size:24
Alignment explanation
Indices: 14919486--14919579 Score: 70
Period size: 24 Copynumber: 3.9 Consensus size: 24
14919476 TATACTGTTT
*
14919486 ATTAATAAT-TAGTATTTAATAA-AA
1 ATTAATAATATA-AATTT-ATAATAA
* *
14919510 ATTAATAATATAAATATATTAT-A
1 ATTAATAATATAAATTTATAATAA
14919533 ATTAATGAATATATAATTTATAATAA
1 ATTAAT-AATATA-AATTTATAATAA
* *
14919559 ATTTAAAAAT-TAAGTTTATAA
1 A-TTAATAATATAAATTTATAA
14919580 AATATTATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
23 10 0.18
24 26 0.46
25 12 0.21
26 5 0.09
27 4 0.07
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (24 bp):
ATTAATAATATAAATTTATAATAA
Found at i:14919991 original size:45 final size:44
Alignment explanation
Indices: 14919942--14920029 Score: 99
Period size: 44 Copynumber: 2.0 Consensus size: 44
14919932 TTACTATTAA
* *
14919942 TTAAATAATAATTAA-TTGAT-ATTAATTATATCAGATAATTTAATC
1 TTAAA-AATAAATAACTTGATAATAAATTA-ATCA-ATAATTTAATC
* *
14919987 TTAAAATTAAATAACTTGATAATAAATTAATTAATAATTTAAT
1 TTAAAAATAAATAACTTGATAATAAATTAATCAATAATTTAAT
14920030 TAAACTAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
44 17 0.46
45 13 0.35
46 7 0.19
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (44 bp):
TTAAAAATAAATAACTTGATAATAAATTAATCAATAATTTAATC
Found at i:14920547 original size:6 final size:6
Alignment explanation
Indices: 14920525--14920627 Score: 54
Period size: 6 Copynumber: 16.8 Consensus size: 6
14920515 TTGTATTTAT
* * * *
14920525 TAATTA TACTTA TTAATTA TAATTA TAATTA TTAATCTAA AAATTA TTAGT-
1 TAATTA TAATTA -TAATTA TAATTA TAATTA -TAAT-T-A TAATTA TAATTA
* *
14920576 TAA-TA TTAATTA -AATTA TAATCA -AATTA TAATATTA TGATTA T-ATTA
1 TAATTA -TAATTA TAATTA TAATTA TAATTA T-A-ATTA TAATTA TAATTA
14920623 TAATT
1 TAATT
14920628 CATTTTAATA
Statistics
Matches: 75, Mismatches: 10, Indels: 24
0.69 0.09 0.22
Matches are distributed among these distances:
4 1 0.01
5 16 0.21
6 35 0.47
7 13 0.17
8 9 0.12
9 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.49
Consensus pattern (6 bp):
TAATTA
Found at i:14920560 original size:13 final size:13
Alignment explanation
Indices: 14920521--14920556 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
14920511 TTGATTGTAT
*
14920521 TTATTAATTATAC
1 TTATTAATTATAA
14920534 TTATTAATTATAA
1 TTATTAATTATAA
14920547 TTA-TAATTAT
1 TTATTAATTAT
14920557 TAATCTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTAATTATAA
Found at i:14920664 original size:13 final size:14
Alignment explanation
Indices: 14920632--14920677 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
14920622 ATAATTCATT
* *
14920632 TTAATAATATTATT
1 TTAATAATATAATA
*
14920646 TTAATAAT-TACTA
1 TTAATAATATAATA
14920659 TTAAT-ATATAATA
1 TTAATAATATAATA
14920672 TTAATA
1 TTAATA
14920678 TAAATGTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 2 0.08
13 16 0.62
14 8 0.31
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TTAATAATATAATA
Found at i:14920898 original size:25 final size:24
Alignment explanation
Indices: 14920868--14920914 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
14920858 AATTATTGTA
14920868 TAATTTAAATAATTAAATAAATACT
1 TAATTTAAATAATT-AATAAATACT
**
14920893 TAATTTATTTAATTAATAAATA
1 TAATTTAAATAATTAATAAATA
14920915 AATTAACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
TAATTTAAATAATTAATAAATACT
Found at i:14920920 original size:25 final size:25
Alignment explanation
Indices: 14920868--14920920 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
14920858 AATTATTGTA
*
14920868 TAATTTAAATAATTAAATAAATACT
1 TAATTTAAATAATTAAATAAATAAT
**
14920893 TAATTTATTTAATT-AATAAATAAAT
1 TAATTTAAATAATTAAATAAAT-AAT
14920918 TAA
1 TAA
14920921 CTATTTGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
TAATTTAAATAATTAAATAAATAAT
Found at i:14921417 original size:15 final size:14
Alignment explanation
Indices: 14921397--14921441 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
14921387 TAACTATATA
14921397 ATATTATAATTAAAT
1 ATATTAT-ATTAAAT
*
14921412 ATATTATATTTAAT
1 ATATTATATTAAAT
*
14921426 ATATAATTATTAAAT
1 ATATTA-TATTAAAT
14921441 A
1 A
14921442 AAAATTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATATTATATTAAAT
Done.