Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 80 of 129
Found at i:14921454 original size:29 final size:32
Alignment explanation
Indices: 14921386--14921454 Score: 74
Period size: 34 Copynumber: 2.2 Consensus size: 32
14921376 TAATTTTTTA
14921386 ATAACTATATAATATTATAATTAAATATATTAT
1 ATAA-TATATAATATTATAATTAAATATATTAT
14921419 ATTTAATATATAATTATTA-AA-TAAA-A-ATTAT
1 A--TAATATATAA-TATTATAATTAAATATATTAT
14921450 ATAAT
1 ATAAT
14921455 TTGTTATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
29 4 0.12
31 6 0.18
32 1 0.03
33 5 0.15
34 9 0.27
35 8 0.24
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (32 bp):
ATAATATATAATATTATAATTAAATATATTAT
Found at i:14922328 original size:30 final size:30
Alignment explanation
Indices: 14922294--14922375 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 30
14922284 TTATTAATAT
*
14922294 TTATTATAAATTAAAATTTATAACAGTTTA
1 TTATTATAAATTAAAATTTATAAAAGTTTA
** *
14922324 TTATT-TACTTTAATAATTTATAAAATTTTA
1 TTATTATAAATTAA-AATTTATAAAAGTTTA
* *
14922354 ATATTAATAACATTAATATTTA
1 TTATT-ATAA-ATTAAAATTTA
14922376 ATTAATTTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
29 6 0.15
30 23 0.57
32 7 0.17
33 4 0.10
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.50
Consensus pattern (30 bp):
TTATTATAAATTAAAATTTATAAAAGTTTA
Found at i:14922363 original size:17 final size:17
Alignment explanation
Indices: 14922332--14922394 Score: 53
Period size: 17 Copynumber: 3.8 Consensus size: 17
14922322 TATTATTTAC
*
14922332 TTTAATAATTTATAAAAT
1 TTTAAT-ATTAATAAAAT
*
14922350 TTTAATATTAATAACA-
1 TTTAATATTAATAAAAT
*
14922366 -TTAATATTTAAT-TAAT
1 TTTAATA-TTAATAAAAT
14922382 TTTAATA-TAATAA
1 TTTAATATTAATAA
14922395 TTATTATATT
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
15 11 0.31
16 5 0.14
17 14 0.39
18 6 0.17
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTAATATTAATAAAAT
Found at i:14922392 original size:15 final size:15
Alignment explanation
Indices: 14922347--14922478 Score: 66
Period size: 15 Copynumber: 8.9 Consensus size: 15
14922337 TAATTTATAA
14922347 AATTTTAATATTAAT
1 AATTTTAATATTAAT
**
14922362 AACATTAATATTTAATT
1 AATTTTAATA-TTAA-T
14922379 AATTTTAATA-TAAT
1 AATTTTAATATTAAT
*
14922393 AATTATT-ATATTTCAT
1 AATT-TTAATA-TTAAT
*
14922409 -ATTGTAATATT-AT
1 AATTTTAATATTAAT
14922422 AATTATATAATATT-AT
1 AATT-T-TAATATTAAT
* *
14922438 AA--CTATTATTAAT
1 AATTTTAATATTAAT
* *
14922451 AGTTATAAT-TTAAT
1 AATTTTAATATTAAT
14922465 AA-TTTATATATTAA
1 AATTTTA-ATATTAA
14922479 AATATGTATT
Statistics
Matches: 89, Mismatches: 14, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
12 6 0.07
13 8 0.09
14 22 0.25
15 26 0.29
16 18 0.20
17 9 0.10
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (15 bp):
AATTTTAATATTAAT
Found at i:14922399 original size:26 final size:28
Alignment explanation
Indices: 14922370--14922432 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 28
14922360 ATAACATTAA
*
14922370 TATTTAATT-A-ATTTTAATATAATAAT
1 TATTTAATTCATATTGTAATATAATAAT
* *
14922396 TATTATATTTCATATTGTAATATTATAAT
1 TATT-TAATTCATATTGTAATATAATAAT
*
14922425 TATATAAT
1 TATTTAAT
14922433 ATTATAACTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
26 4 0.14
27 4 0.14
28 4 0.14
29 17 0.59
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (28 bp):
TATTTAATTCATATTGTAATATAATAAT
Found at i:14922459 original size:9 final size:8
Alignment explanation
Indices: 14922387--14922483 Score: 69
Period size: 8 Copynumber: 12.0 Consensus size: 8
14922377 TTAATTTTAA
14922387 TATAATAAT
1 TATAAT-AT
*
14922396 TATTATAT
1 TATAATAT
*
14922404 T-TCATAT
1 TATAATAT
*
14922411 TGTAATAT
1 TATAATAT
14922419 TATAAT-T
1 TATAATAT
14922426 ATATAATAT
1 -TATAATAT
14922435 TATAACTAT
1 TATAA-TAT
14922444 TATTAATAGT
1 TA-TAATA-T
14922454 TATAAT-T
1 TATAATAT
14922461 TAATAAT-T
1 T-ATAATAT
14922469 TAT-ATAT
1 TATAATAT
*
14922476 TAAAATAT
1 TATAATAT
14922484 GTATTAATAG
Statistics
Matches: 74, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
6 2 0.03
7 14 0.19
8 35 0.47
9 17 0.23
10 6 0.08
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (8 bp):
TATAATAT
Found at i:14922800 original size:21 final size:20
Alignment explanation
Indices: 14922756--14922797 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 20
14922746 AAATAAATAG
14922756 ATAATAATTTATTATTATTTT
1 ATAATAATTTATTATTA-TTT
14922777 ATAATAATATTATTAATTATT
1 ATAATAAT-TTATT-ATTATT
14922798 ATATTTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATAATTTATTATTATTT
Found at i:14922819 original size:20 final size:21
Alignment explanation
Indices: 14922785--14922823 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
14922775 TTATAATAAT
14922785 ATTATTAATTATTATATTTAA
1 ATTATTAATTATTATATTTAA
*
14922806 ATTA-TAATTGTTATATTT
1 ATTATTAATTATTATATTT
14922824 TATTTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
ATTATTAATTATTATATTTAA
Found at i:14923946 original size:13 final size:13
Alignment explanation
Indices: 14923928--14923971 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
14923918 CTAATTTGTA
14923928 TATTAATATAAAT
1 TATTAATATAAAT
*
14923941 TATTAATATATAT
1 TATTAATATAAAT
*
14923954 TATGGAATATGAAAT
1 TAT-TAATAT-AAAT
14923969 TAT
1 TAT
14923972 ATTATTAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
13 15 0.58
14 5 0.19
15 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (13 bp):
TATTAATATAAAT
Found at i:14924208 original size:16 final size:16
Alignment explanation
Indices: 14924187--14924223 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
14924177 TAAAATAAAT
14924187 ATTAATTTA-TTTAATA
1 ATTAATTTACTTT-ATA
14924203 ATTAA-TTACTTTATA
1 ATTAATTTACTTTATA
14924218 ATTAAT
1 ATTAAT
14924224 AATATTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTAATTTACTTTATA
Found at i:14924305 original size:21 final size:21
Alignment explanation
Indices: 14924279--14924336 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
14924269 TGTTTAAATA
* *
14924279 ATAATATTATTAATTATT-ATT
1 ATAATAGTAATAA-TATTAATT
14924300 ATAATAGTAATAATATTAATT
1 ATAATAGTAATAATATTAATT
*
14924321 ATAATAATAAATAATA
1 ATAATAGT-AATAATA
14924337 GTCAAAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.12
21 21 0.66
22 7 0.22
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
ATAATAGTAATAATATTAATT
Found at i:14924305 original size:27 final size:28
Alignment explanation
Indices: 14924273--14924336 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
14924263 TTAGTTTGTT
* * *
14924273 TAAATAATAATATTATTAATTATTATTA
1 TAAATAATAATAATATTAATTATAATAA
*
14924301 T-AATAGTAATAATATTAATTATAATAA
1 TAAATAATAATAATATTAATTATAATAA
14924328 TAAATAATA
1 TAAATAATA
14924337 GTCAAAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.77
28 7 0.23
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (28 bp):
TAAATAATAATAATATTAATTATAATAA
Found at i:14924360 original size:31 final size:31
Alignment explanation
Indices: 14924277--14924360 Score: 75
Period size: 30 Copynumber: 2.7 Consensus size: 31
14924267 TTTGTTTAAA
* * * *
14924277 TAATAATATTATTAATTATTAT-TATAATAG
1 TAATAATATTAATAATAATAATAAATAATAG
*
14924307 TAATAATATTAATTATAATAATAAATAATAG
1 TAATAATATTAATAATAATAATAAATAATAG
*
14924338 TCAA-AATA-TAACTAATAGTAATA
1 T-AATAATATTAA-TAATAATAATA
14924361 TTTCAATTAT
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
30 21 0.48
31 21 0.48
32 2 0.05
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (31 bp):
TAATAATATTAATAATAATAATAAATAATAG
Found at i:14924505 original size:18 final size:17
Alignment explanation
Indices: 14924469--14924509 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
14924459 TTATTCTATA
* *
14924469 ATAATTATATTATTCAT
1 ATAAATATATTATTAAT
14924486 ATAAATATATTTATTAAT
1 ATAAATATA-TTATTAAT
14924504 ATAAAT
1 ATAAAT
14924510 TAAATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAAATATATTATTAAT
Found at i:14924799 original size:27 final size:27
Alignment explanation
Indices: 14924769--14924834 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 27
14924759 AATAATTAAA
*
14924769 TTTATATATAATTA-TCTGAATATTGAT
1 TTTATAT-TAATTATTCTAAATATTGAT
* *
14924796 TTTA-ATTTAAATATTTTAAATATTGAT
1 TTTATA-TTAATTATTCTAAATATTGAT
14924823 TTT-TATTAATTA
1 TTTATATTAATTA
14924835 ATAGATATCT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 12 0.38
27 20 0.62
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (27 bp):
TTTATATTAATTATTCTAAATATTGAT
Found at i:14925924 original size:12 final size:12
Alignment explanation
Indices: 14925885--14925928 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
14925875 TAATTTAATT
14925885 ATTATTATATATA
1 ATTA-TATATATA
*
14925898 AATATATATACTA
1 ATTATATATA-TA
*
14925911 ATTATATATTTA
1 ATTATATATATA
14925923 ATTATA
1 ATTATA
14925929 ACTTTATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
12 14 0.52
13 13 0.48
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTATATATATA
Found at i:14925955 original size:29 final size:28
Alignment explanation
Indices: 14925858--14925957 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 28
14925848 ATATAATAGT
* *
14925858 TAATTATTATAACTAGATAATTTAATTA
1 TAATTATTATAACTATATAAATTAATTA
* * * *
14925886 TTATTATATATAAATATATATACTAATTA
1 TAATTAT-TATAACTATATAAATTAATTA
*
14925915 TATATTTAATTATAACTTTATAAATTAATTA
1 TA-A-TT-ATTATAACTATATAAATTAATTA
14925946 TAATATATTATA
1 TAAT-TATTATA
14925958 TAACCAGTTA
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
28 6 0.11
29 24 0.43
30 3 0.05
31 21 0.38
32 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (28 bp):
TAATTATTATAACTATATAAATTAATTA
Found at i:14925960 original size:31 final size:31
Alignment explanation
Indices: 14925860--14925961 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 31
14925850 ATAATAGTTA
* *
14925860 ATTATTATAACTAGATAATTTAA-T-TAT-T
1 ATTATTATAACTATATAAATTAATTATATAT
* * *
14925888 ATTATATATAAATATATATACTAATTATATAT
1 ATTAT-TATAACTATATAAATTAATTATATAT
*
14925920 -TTAATTATAACTTTATAAATTAATTATAATAT
1 ATT-ATTATAACTATATAAATTAATTAT-ATAT
14925952 ATTA-TATAAC
1 ATTATTATAAC
14925962 CAGTTAATTA
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
28 5 0.09
29 13 0.22
30 1 0.02
31 29 0.50
32 8 0.14
33 2 0.03
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (31 bp):
ATTATTATAACTATATAAATTAATTATATAT
Found at i:14926342 original size:25 final size:25
Alignment explanation
Indices: 14926308--14926370 Score: 110
Period size: 25 Copynumber: 2.6 Consensus size: 25
14926298 TTGATATTAA
14926308 TAATTTACTATAATTATAATAGTAT
1 TAATTTACTATAATTATAATAGTAT
*
14926333 TAATTTACTATAATTATAATATTAT
1 TAATTTACTATAATTATAATAGTAT
14926358 TAATTTA-TATAAT
1 TAATTTACTATAAT
14926371 AATACAATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 6 0.16
25 31 0.84
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (25 bp):
TAATTTACTATAATTATAATAGTAT
Found at i:14926370 original size:18 final size:19
Alignment explanation
Indices: 14926345--14926397 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
14926335 ATTTACTATA
14926345 ATTATAATATTATTAATTT
1 ATTATAATATTATTAATTT
* *
14926364 A-TATAATAATA-CAATTT
1 ATTATAATATTATTAATTT
14926381 ATTATAATTATTATTAA
1 ATTATAA-TATTATTAA
14926398 AATATAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
17 6 0.22
18 14 0.52
19 5 0.19
20 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTATAATATTATTAATTT
Found at i:14926382 original size:25 final size:25
Alignment explanation
Indices: 14926301--14926384 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 25
14926291 TAATTATTTG
* *
14926301 ATATTAATAATTTACTATAATTATA
1 ATATTATTAATTTACTATAATTACA
* *
14926326 ATAGTATTAATTTACTATAATTATA
1 ATATTATTAATTTACTATAATTACA
14926351 ATATTATTAATTTA-TATAATAATACA
1 ATATTATTAATTTACTATAAT--TACA
14926377 AT-TTATTA
1 ATATTATTA
14926385 TAATTATTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
24 6 0.11
25 42 0.79
26 5 0.09
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (25 bp):
ATATTATTAATTTACTATAATTACA
Found at i:14926413 original size:22 final size:22
Alignment explanation
Indices: 14926383--14926428 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14926373 TACAATTTAT
14926383 TATAATTATTATTAAAATAT-AA
1 TATAATTATTATT-AAATATGAA
* *
14926405 TATATTTATTGTTAAATATGAA
1 TATAATTATTATTAAATATGAA
14926427 TA
1 TA
14926429 GATTATAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
TATAATTATTATTAAATATGAA
Found at i:14926434 original size:21 final size:21
Alignment explanation
Indices: 14926387--14926434 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
14926377 ATTTATTATA
*
14926387 ATTATTATTAAAATATAATAT
1 ATTATTATTAAAATATAATAG
*
14926408 ATTTATTGTT-AAATATGAATAG
1 A-TTATTATTAAAATAT-AATAG
14926430 ATTAT
1 ATTAT
14926435 AATCATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (21 bp):
ATTATTATTAAAATATAATAG
Found at i:14927293 original size:16 final size:16
Alignment explanation
Indices: 14927274--14927325 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
14927264 TTATATAATG
14927274 ATATTTTTAAATATTT
1 ATATTTTTAAATATTT
* * *
14927290 ATA--TTTAAAAAATA
1 ATATTTTTAAATATTT
14927304 ATATTTTTAAATATTT
1 ATATTTTTAAATATTT
14927320 ATATTT
1 ATATTT
14927326 AAAAAATAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 11 0.39
16 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATATTTTTAAATATTT
Found at i:14927295 original size:30 final size:30
Alignment explanation
Indices: 14927254--14927340 Score: 138
Period size: 30 Copynumber: 2.9 Consensus size: 30
14927244 TTAATTATTT
* * * *
14927254 ATATATATATTTATATAATGATATTTTTAA
1 ATATTTATATTTAAAAAATAATATTTTTAA
14927284 ATATTTATATTTAAAAAATAATATTTTTAA
1 ATATTTATATTTAAAAAATAATATTTTTAA
14927314 ATATTTATATTTAAAAAATAATATTTT
1 ATATTTATATTTAAAAAATAATATTTT
14927341 ATTAATTTCG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (30 bp):
ATATTTATATTTAAAAAATAATATTTTTAA
Found at i:14927296 original size:14 final size:14
Alignment explanation
Indices: 14927279--14927328 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
14927269 TAATGATATT
14927279 TTTAAATATTTATA
1 TTTAAATATTTATA
* * *
14927293 TTTAAAAAATAATATT
1 TTT-AAATAT-TTATA
14927309 TTTAAATATTTATA
1 TTTAAATATTTATA
14927323 TTTAAA
1 TTTAAA
14927329 AAATAATATT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 12 0.43
15 10 0.36
16 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAAATATTTATA
Found at i:14927337 original size:14 final size:14
Alignment explanation
Indices: 14927290--14927339 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
14927280 TTAAATATTT
14927290 ATATTTAAAAAATA
1 ATATTTAAAAAATA
* * *
14927304 ATATTTTTAAATATTT
1 ATA--TTTAAAAAATA
14927320 ATATTTAAAAAATA
1 ATATTTAAAAAATA
14927334 ATATTT
1 ATATTT
14927340 TATTAATTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 17 0.61
16 11 0.39
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
ATATTTAAAAAATA
Found at i:14927684 original size:7 final size:7
Alignment explanation
Indices: 14927672--14927704 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
14927662 ATTAATTAAA
14927672 ATTATAT
1 ATTATAT
14927679 ATTATAT
1 ATTATAT
14927686 ATTATAT
1 ATTATAT
14927693 ATTATAT
1 ATTATAT
14927700 ATTAT
1 ATTAT
14927705 TAAACAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTATAT
Found at i:14928113 original size:153 final size:155
Alignment explanation
Indices: 14927933--14928224 Score: 383
Period size: 158 Copynumber: 1.9 Consensus size: 155
14927923 ATTAGAATTA
* * *
14927933 TTTTATTTTGAATAAGCTTATATGAATTGAAACAATTATTTTATGACATAAC-A-TCATAATGAT
1 TTTTATTTTGAATAAGCTTATAGGAATTGAAACAATTATTTTATGACAAAACAAGTCATAACGAT
* * * *
14927996 TTTA-AATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTGCTCGACAAACAAATTTATTT
66 TTTATAA-AAATAATTGATCAAATAGTCATAACTATTTAAACTTGCTCGACAAACAAATTTATTT
14928060 TTTTAAACTCTTGGTTATTAAATTCT
130 TTTTAAACTCTTGGTTATTAAATTCT
* * * *
14928086 TTTTATTTTGGATAAGCTTTTAGGAATTGAAACAATTGTTTTATGTCAAAACAAAAAGTCATAAC
1 TTTTATTTTGAATAAGCTTATAGGAATTGAAACAATTATTTTATGACAAAAC---AAGTCATAAC
* * * **
14928151 GATTTTATAAAAATAATTGATCAAATAGTCATAACTTTTTAAACTTGTTTGGTAAACAAATTTAT
63 GATTTTATAAAAATAATTGATCAAATAGTCATAACTATTTAAACTTGCTCGACAAACAAATTTAT
14928216 TTTTTTAAA
128 TTTTTTAAA
14928225 TATTAAATTA
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
153 46 0.39
157 1 0.01
158 68 0.58
159 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (155 bp):
TTTTATTTTGAATAAGCTTATAGGAATTGAAACAATTATTTTATGACAAAACAAGTCATAACGAT
TTTATAAAAATAATTGATCAAATAGTCATAACTATTTAAACTTGCTCGACAAACAAATTTATTTT
TTTAAACTCTTGGTTATTAAATTCT
Found at i:14928305 original size:13 final size:13
Alignment explanation
Indices: 14928289--14928336 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
14928279 TATGTTTTTT
14928289 ATAATATATATTA
1 ATAATATATATTA
14928302 ATAATATATATTA
1 ATAATATATATTA
* * * *
14928315 CTATTATAAATTC
1 ATAATATATATTA
14928328 ATAATATAT
1 ATAATATAT
14928337 TAGAATAATA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (13 bp):
ATAATATATATTA
Found at i:14928640 original size:16 final size:17
Alignment explanation
Indices: 14928607--14928658 Score: 52
Period size: 16 Copynumber: 3.0 Consensus size: 17
14928597 TGTAAGGATT
14928607 TATTATAATTATTAAAA
1 TATTATAATTATTAAAA
* *
14928624 TATT-TAATTGTTCAAA
1 TATTATAATTATTAAAA
*
14928640 TCATTATCAATTAATAAAA
1 T-ATTAT-AATTATTAAAA
14928659 ATCTCAACAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
16 11 0.41
17 7 0.26
18 1 0.04
19 8 0.30
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (17 bp):
TATTATAATTATTAAAA
Found at i:14929722 original size:21 final size:20
Alignment explanation
Indices: 14929685--14929727 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
14929675 ATATAATTCT
14929685 ATTTAATTAATATAAATTATA
1 ATTTAATTAATATAAATT-TA
*
14929706 ATTTAATGTATTA-AAATTTA
1 ATTTAAT-TAATATAAATTTA
14929726 AT
1 AT
14929728 ATATAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
ATTTAATTAATATAAATTTA
Found at i:14930125 original size:19 final size:17
Alignment explanation
Indices: 14930101--14930140 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
14930091 GATAGTGGGA
14930101 TAATTTACAAATTATCATT
1 TAATTTACAAA-TAT-ATT
*
14930120 TAATTTATAAATATATT
1 TAATTTACAAATATATT
14930137 TAAT
1 TAAT
14930141 AATATTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 3 0.15
19 10 0.50
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATTTACAAATATATT
Found at i:14930703 original size:10 final size:10
Alignment explanation
Indices: 14930688--14930770 Score: 53
Period size: 10 Copynumber: 8.4 Consensus size: 10
14930678 ATATGTTCTG
14930688 AATATATAAT
1 AATATATAAT
14930698 AATATAT-AT
1 AATATATAAT
* *
14930707 TATAT-TATT
1 AATATATAAT
* *
14930716 AATAAATCAT
1 AATATATAAT
*
14930726 AATATATTAT
1 AATATATAAT
* *
14930736 ATTATATGAT
1 AATATATAAT
* *
14930746 ATTAAATAAT
1 AATATATAAT
*
14930756 AATATCATATT
1 AATAT-ATAAT
14930767 AATA
1 AATA
14930771 ACTGTCTACA
Statistics
Matches: 55, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
8 1 0.02
9 10 0.18
10 36 0.65
11 8 0.15
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (10 bp):
AATATATAAT
Found at i:14930934 original size:21 final size:21
Alignment explanation
Indices: 14930892--14930935 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
14930882 AATATAGAAT
* * *
14930892 ATTTTATTACTTATTTAATAA
1 ATTTTATTAATAAATTAATAA
*
14930913 ATTTTATTAATAAATTATTAA
1 ATTTTATTAATAAATTAATAA
14930934 AT
1 AT
14930936 AAGTAATATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTTATTAATAAATTAATAA
Found at i:14930968 original size:18 final size:20
Alignment explanation
Indices: 14930927--14930982 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
14930917 TATTAATAAA
*
14930927 TTATTAAATAAGTAATA-T-C
1 TTATTATATAA-TAATATTAC
*
14930946 TTATT-TTTAATAA-ATTAC
1 TTATTATATAATAATATTAC
14930964 TTATTATATAATAATATTA
1 TTATTATATAATAATATTA
14930983 ATTTTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
16 1 0.03
17 4 0.13
18 9 0.30
19 12 0.40
20 4 0.13
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (20 bp):
TTATTATATAATAATATTAC
Found at i:14931988 original size:163 final size:162
Alignment explanation
Indices: 14931816--14932147 Score: 407
Period size: 163 Copynumber: 2.0 Consensus size: 162
14931806 TGAACTAGTC
* * ** * *
14931816 ATAATTATTTAAACTGGTTTGGTAAA-TAGATTTATTTTTTAAATCTCTTAGTTATTAATTTTTG
1 ATAATTATTTAAACTGATTTGATAAACT-GATTTATTTTTTAAATCTCCAAGTTATCAAATTTTG
* * *
14931880 AAATATTAATAAATTAGTATTATTTTATTTTCAATAAGCTTGTA-CAATCAAAAACAATTGTTTT
65 AAATAGTAATAAAGTAATATTATTTTATTTTCAATAAG-TTGTATCAAT-AAAAACAATTGTTTT
*
14931944 ATAATAAAATAAAAGGTCATAACGATTTGAAATAA
128 ATAATAAAACAAAAGGTCATAACGATTTGAAATAA
* * *
14931979 ATAATTATTTGAACTGATTTGATAAACTGATTTATTTTTTAAATCTCCAATTTCTCAAATTTTGA
1 ATAATTATTTAAACTGATTTGATAAACTGATTTATTTTTTAAATCTCCAAGTTATCAAATTTTGA
** * * **
14932044 AATAGTAATAAAGTAATATTATTTTATTTTGGATAAGTTTTATTGAATTGAAACAATTGTTTTAT
66 AATAGTAATAAAGTAATATTATTTTATTTTCAATAAGTTGTA-TCAATAAAAACAATTGTTTTAT
* * * *
14932109 GATAAAACAAAAGGTCATAATGATTTTAAATAG
130 AATAAAACAAAAGGTCATAACGATTTGAAATAA
14932142 ATAATT
1 ATAATT
14932148 GTTCAAATAG
Statistics
Matches: 143, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
162 4 0.03
163 135 0.94
164 4 0.03
ACGTcount: A:0.40, C:0.06, G:0.10, T:0.44
Consensus pattern (162 bp):
ATAATTATTTAAACTGATTTGATAAACTGATTTATTTTTTAAATCTCCAAGTTATCAAATTTTGA
AATAGTAATAAAGTAATATTATTTTATTTTCAATAAGTTGTATCAATAAAAACAATTGTTTTATA
ATAAAACAAAAGGTCATAACGATTTGAAATAA
Found at i:14932316 original size:19 final size:19
Alignment explanation
Indices: 14932294--14932332 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14932284 TAATAATCAT
*
14932294 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
14932313 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
14932332 T
1 T
14932333 GACTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:14932331 original size:31 final size:32
Alignment explanation
Indices: 14932296--14932366 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 32
14932286 ATAATCATTA
*
14932296 ATTAATAATTGTATT-AAT-AATTAACAATATT
1 ATTAATAA-TCTATTGAATAAATTAACAATATT
* **
14932327 ATTAATGA-CTATTGAATAAATTATTAATATT
1 ATTAATAATCTATTGAATAAATTAACAATATT
14932358 ATTAATAAT
1 ATTAATAAT
14932367 ATTATATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
29 4 0.12
30 3 0.09
31 25 0.78
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (32 bp):
ATTAATAATCTATTGAATAAATTAACAATATT
Found at i:14932360 original size:9 final size:9
Alignment explanation
Indices: 14932307--14932388 Score: 55
Period size: 9 Copynumber: 9.0 Consensus size: 9
14932297 TTAATAATTG
14932307 TATTAATAAT
1 TATTAAT-AT
**
14932317 TAACAATAT
1 TATTAATAT
*
14932326 TATTAATGAC
1 TATTAAT-AT
14932336 TATTGAATAAAT
1 TATT-AAT--AT
14932348 TATTAATAT
1 TATTAATAT
14932357 TATTAATA-
1 TATTAATAT
*
14932365 -A-TATTA-
1 TATTAATAT
14932371 TATTAATAT
1 TATTAATAT
14932380 TATTAATAT
1 TATTAATAT
14932389 ATTTAATAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
6 4 0.07
7 2 0.04
8 4 0.07
9 26 0.46
10 10 0.18
11 6 0.11
12 5 0.09
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (9 bp):
TATTAATAT
Found at i:14932374 original size:23 final size:22
Alignment explanation
Indices: 14932282--14932398 Score: 95
Period size: 23 Copynumber: 5.4 Consensus size: 22
14932272 CTAAAATTTC
*
14932282 TTTAATAATCATTAATTAATAAT-
1 TTTATTAAT-ATT-ATTAATAATA
* *
14932305 TGTATTAATA--ATTAACAATA
1 TTTATTAATATTATTAATAATA
*
14932325 -TTATTAATGACTATTGAATAA-A
1 TTTATTAAT-ATTATT-AATAATA
14932347 -TTATTAATATTATTAATAATA
1 TTTATTAATATTATTAATAATA
14932368 TTATATTAATATTATTAAT-ATA
1 TT-TATTAATATTATTAATAATA
*
14932390 TTTAATAAT
1 TTTATTAAT
14932399 CCAATTAAAA
Statistics
Matches: 79, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
19 15 0.19
20 6 0.08
21 12 0.15
22 19 0.24
23 27 0.34
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (22 bp):
TTTATTAATATTATTAATAATA
Found at i:14932882 original size:23 final size:23
Alignment explanation
Indices: 14932811--14932890 Score: 63
Period size: 23 Copynumber: 3.4 Consensus size: 23
14932801 ATTAAGATAA
*
14932811 TAATATAATTATTTAGTTTTATATT
1 TAAT-TAATTATTTATTTTTA-ATT
* * * *
14932836 TAATTAATTAATGACTATCT-ATT
1 TAATTAATTATTTA-TTTTTAATT
*
14932859 TACTTAATTATTTATTTTTAATT
1 TAATTAATTATTTATTTTTAATT
*
14932882 TAAATAATT
1 TAATTAATT
14932891 GCAATAGTTT
Statistics
Matches: 41, Mismatches: 12, Indels: 6
0.69 0.20 0.10
Matches are distributed among these distances:
22 3 0.07
23 24 0.59
24 8 0.20
25 6 0.15
ACGTcount: A:0.38, C:0.04, G:0.03, T:0.56
Consensus pattern (23 bp):
TAATTAATTATTTATTTTTAATT
Found at i:14933083 original size:22 final size:21
Alignment explanation
Indices: 14933058--14933109 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
14933048 ATCCTTATTT
14933058 AATTATTAAT-TTATTAAATATA
1 AATTATTAATATTA-TAAAT-TA
* *
14933080 AATTCTTTATATTATAAATTA
1 AATTATTAATATTATAAATTA
14933101 AATATATTA
1 AAT-TATTA
14933110 TTAATAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
21 5 0.21
22 16 0.67
23 3 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
AATTATTAATATTATAAATTA
Found at i:14933101 original size:27 final size:29
Alignment explanation
Indices: 14933070--14933137 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 29
14933060 TTATTAATTT
* *
14933070 ATTAAATATAAATTCTTTAT-ATTATA-A
1 ATTAAATATAAATTATTAATAATTATATA
14933097 ATTAAATAT--ATTATTAATAATTATATA
1 ATTAAATATAAATTATTAATAATTATATA
*
14933124 ATTATATATAAATT
1 ATTAAATATAAATT
14933138 TACTAATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 7 0.21
26 6 0.18
27 18 0.53
29 3 0.09
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (29 bp):
ATTAAATATAAATTATTAATAATTATATA
Found at i:14933137 original size:19 final size:19
Alignment explanation
Indices: 14933086--14933146 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
14933076 TATAAATTCT
*
14933086 TTATATTATAAATTAAATATA
1 TTATA-TATAAATTATATA-A
14933107 TTAT-TA-ATAATTATATAA
1 TTATATATA-AATTATATAA
14933125 TTATATATAAATT-TACTAA
1 TTATATATAAATTATA-TAA
14933144 TTA
1 TTA
14933147 ATCAATCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
18 8 0.23
19 22 0.63
20 1 0.03
21 4 0.11
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TTATATATAAATTATATAA
Found at i:14933208 original size:13 final size:12
Alignment explanation
Indices: 14933190--14933220 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
14933180 ATTTACTATA
14933190 ATATATATAATCT
1 ATATATATAAT-T
14933203 ATATATATAATT
1 ATATATATAATT
14933215 ATATAT
1 ATATAT
14933221 TATATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATATATAATT
Found at i:14933224 original size:17 final size:17
Alignment explanation
Indices: 14933204--14933276 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 17
14933194 ATATAATCTA
14933204 TATATATAATTATATAT
1 TATATATAATTATATAT
14933221 TATATATAA--ATATAT
1 TATATATAATTATATAT
* * *
14933236 TTTAAATAATATAATAACAT
1 TATATATAAT-T-AT-ATAT
14933256 TATATA-AATTATA-AT
1 TATATATAATTATATAT
14933271 TATATA
1 TATATA
14933277 ATACTTAGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
15 21 0.46
16 1 0.02
17 11 0.24
18 1 0.02
19 5 0.11
20 7 0.15
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (17 bp):
TATATATAATTATATAT
Found at i:14933233 original size:15 final size:15
Alignment explanation
Indices: 14933186--14933236 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 15
14933176 TCTTATTTAC
*
14933186 TATAATATATAT-AA
1 TATATTATATATAAA
*
14933200 TCTA-TATATATAATTA
1 TATATTATATATAA--A
14933216 TATATTATATATAAA
1 TATATTATATATAAA
14933231 TATATT
1 TATATT
14933237 TTAAATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
13 7 0.23
14 4 0.13
15 7 0.23
16 4 0.13
17 9 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TATATTATATATAAA
Found at i:14933274 original size:15 final size:16
Alignment explanation
Indices: 14933204--14933277 Score: 60
Period size: 17 Copynumber: 4.4 Consensus size: 16
14933194 ATATAATCTA
14933204 TATATATAATTATATAT
1 TATATA-AATTATATAT
* *
14933221 TATATATAAATATATTT
1 TATATA-AATTATATAT
* * *
14933238 TAAATAATATAATAACAT
1 TATATAA-ATTAT-ATAT
14933256 TATATAAATTATA-AT
1 TATATAAATTATATAT
14933271 TATATAA
1 TATATAA
14933278 TACTTAGAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
15 9 0.20
16 2 0.04
17 27 0.59
18 8 0.17
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (16 bp):
TATATAAATTATATAT
Found at i:14933320 original size:30 final size:27
Alignment explanation
Indices: 14933244--14933309 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 27
14933234 ATTTTAAATA
14933244 ATATAATAACATTA-TATAAATTATAATT
1 ATATAAT-AC-TTAGTATAAATTATAATT
*
14933272 ATATAATACTTAGAATAAATTATCATTATT
1 ATATAATACTTAGTATAAATTAT-A--ATT
14933302 ATATAATA
1 ATATAATA
14933310 TTGGTTATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 3 0.09
27 11 0.33
28 8 0.24
30 11 0.33
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (27 bp):
ATATAATACTTAGTATAAATTATAATT
Found at i:14933377 original size:34 final size:34
Alignment explanation
Indices: 14933331--14933396 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
14933321 GTTTTATAAC
* *
14933331 TAATATATAATTATATTATTAT-ATATCAAATTAT
1 TAATATAGAATTA-ATTAATATAATATCAAATTAT
*
14933365 TAATATAGAATTAATTAATATAATATTAAATT
1 TAATATAGAATTAATTAATATAATATCAAATT
14933397 CAAATATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (34 bp):
TAATATAGAATTAATTAATATAATATCAAATTAT
Found at i:14933392 original size:15 final size:15
Alignment explanation
Indices: 14933343--14933419 Score: 51
Period size: 15 Copynumber: 5.3 Consensus size: 15
14933333 ATATATAATT
14933343 ATATT-ATTATATATCA
1 ATATTAATTA-ATAT-A
14933359 A-ATT-ATTAATATA
1 ATATTAATTAATATA
14933372 GA-ATTAATTAATATA
1 -ATATTAATTAATATA
14933387 ATATTAAATTCAA-ATA
1 ATATT-AATT-AATATA
*
14933403 TTATTAA-T-ATATA
1 ATATTAATTAATATA
14933416 ATAT
1 ATAT
14933420 AATAATCATT
Statistics
Matches: 53, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
12 1 0.02
13 7 0.13
14 10 0.19
15 21 0.40
16 12 0.23
17 2 0.04
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (15 bp):
ATATTAATTAATATA
Found at i:14937683 original size:24 final size:25
Alignment explanation
Indices: 14937618--14937685 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
14937608 ACTATATATT
14937618 AATAAATTTATTAATATAA-AATTTTA
1 AATAAA-TTATTAATA-AATAATTTTA
* **
14937644 AGT-AATTATTTTTAAATAA-TTTA
1 AATAAATTATTAATAAATAATTTTA
14937667 AATAAATTATTAATAAATA
1 AATAAATTATTAATAAATA
14937686 TAATTTATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
23 8 0.24
24 22 0.65
25 2 0.06
26 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (25 bp):
AATAAATTATTAATAAATAATTTTA
Found at i:14938211 original size:18 final size:18
Alignment explanation
Indices: 14938186--14938241 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
14938176 AATTAATAAA
14938186 TTAAATTAATTATTTAAT
1 TTAAATTAATTATTTAAT
* * *
14938204 TTATATTAA-TATATAAGG
1 TTAAATTAATTATTTAA-T
14938222 TTAAATTAATTATTGTAAT
1 TTAAATTAATTATT-TAAT
14938241 T
1 T
14938242 AATAATTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 6 0.21
18 16 0.55
19 4 0.14
20 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (18 bp):
TTAAATTAATTATTTAAT
Found at i:14938379 original size:15 final size:15
Alignment explanation
Indices: 14938342--14938373 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14938332 ATATATAGTT
*
14938342 ATTAATTATTAATAA
1 ATTAATAATTAATAA
14938357 ATTAATAATTAATAA
1 ATTAATAATTAATAA
14938372 AT
1 AT
14938374 AGATAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTAATAATTAATAA
Found at i:14938426 original size:19 final size:20
Alignment explanation
Indices: 14938404--14938449 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14938394 TTAATGTTAA
*
14938404 AATTATAATTAT-TTAATTT
1 AATTATAATTATATAAATTT
14938423 AATTAT-ATTATATAAATTT
1 AATTATAATTATATAAATTT
*
14938442 AATGATAA
1 AATTATAA
14938450 ACAAATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 5 0.22
19 17 0.74
20 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
AATTATAATTATATAAATTT
Found at i:14938520 original size:12 final size:12
Alignment explanation
Indices: 14938503--14938532 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14938493 TTAATATTAA
14938503 TAATAACTAAAT
1 TAATAACTAAAT
14938515 TAATAACTAAAT
1 TAATAACTAAAT
*
14938527 TGATAA
1 TAATAA
14938533 TATTAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (12 bp):
TAATAACTAAAT
Found at i:14939098 original size:165 final size:165
Alignment explanation
Indices: 14938811--14939128 Score: 444
Period size: 165 Copynumber: 1.9 Consensus size: 165
14938801 TTTAAAATTT
* * * *
14938811 TTACTTATTAATTTTTGGAACATTGATAAATTTATATTATTTTGTTTGAAATAAGCTTGAATGAA
1 TTACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTTATTTCAAATAAGCTTAAATGAA
* ** * *
14938876 TAGAACCAATTGTTTTATGACAAAACAAAAAGTTGTAATGTTTTGAAATAGATAATTATT-AAGA
66 TAGAAACAATTGTTTTATGACAAAACAAAAAGTTACAATGATTTGAAATAAATAATTATTCAA-A
14938940 TAGTCATAACTATTTGAACTTGTTCGATTAATTTTC
130 TAGTCATAACTATTTGAACTTGTTCGATTAATTTTC
* *
14938976 TTACTTTTTAATTTTTGGAATATTAATAAA-TTAGTATTATTTTATTTCAAATAAGC-TAACATG
1 TTACTTATTAATTTTTGGAACATTAATAAATTTA-TATTATTTTATTTCAAATAAGCTTAA-ATG
* * * *
14939039 AATTGAAACAATTGTTTTATTACAAAACAAAATGTTACAATGATTTGAAGTAAATAATTATTCAA
64 AATAGAAACAATTGTTTTATGACAAAACAAAAAGTTACAATGATTTGAAATAAATAATTATTCAA
*
14939104 ATAGTCATGACTATTTGAACTTGTT
129 ATAGTCATAACTATTTGAACTTGTT
14939129 TGGTAAACTT
Statistics
Matches: 134, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
164 5 0.04
165 127 0.95
166 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (165 bp):
TTACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTTATTTCAAATAAGCTTAAATGAA
TAGAAACAATTGTTTTATGACAAAACAAAAAGTTACAATGATTTGAAATAAATAATTATTCAAAT
AGTCATAACTATTTGAACTTGTTCGATTAATTTTC
Found at i:14939417 original size:9 final size:9
Alignment explanation
Indices: 14939397--14939425 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14939387 TATAACTAAA
14939397 AATTAA-AT
1 AATTAATAT
14939405 AATTAATAT
1 AATTAATAT
14939414 AATTAATAT
1 AATTAATAT
14939423 AAT
1 AAT
14939426 ATCAAACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTAATAT
Found at i:14939631 original size:15 final size:15
Alignment explanation
Indices: 14939611--14939640 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14939601 CCTTTTGTAA
14939611 TATTATAATTATAAT
1 TATTATAATTATAAT
14939626 TATTATAATTATAAT
1 TATTATAATTATAAT
14939641 AGATTAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTATAATTATAAT
Found at i:14939927 original size:33 final size:32
Alignment explanation
Indices: 14939890--14939997 Score: 91
Period size: 33 Copynumber: 3.3 Consensus size: 32
14939880 TTTAATTTAC
14939890 ATATTATTATAATTAATTTAACTAATAAATTAA
1 ATATTATTATAATTAATTTAA-TAATAAATTAA
*
14939923 ATATTATTATACTGT-ATTT-ATAAATGAAGATTAA
1 ATATTATTATAAT-TAATTTAAT-AAT-AA-ATTAA
* *
14939957 ATATTA-T-TAATTAAATTAATTAATATTATTAA
1 ATATTATTATAATTAATTTAA-TAATA-AATTAA
14939989 A-ATTATTAT
1 ATATTATTAT
14939998 TATATATTAT
Statistics
Matches: 61, Mismatches: 4, Indels: 20
0.72 0.05 0.24
Matches are distributed among these distances:
31 6 0.10
32 18 0.30
33 24 0.39
34 13 0.21
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (32 bp):
ATATTATTATAATTAATTTAATAATAAATTAA
Found at i:14939983 original size:19 final size:18
Alignment explanation
Indices: 14939961--14940025 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 18
14939951 GATTAAATAT
14939961 TATTAATTAAATTAATTAA
1 TATT-ATTAAATTAATTAA
14939980 TATTATTAAAATTATTATTATA
1 TATTATT-AAATTA--ATTA-A
*
14940002 TATTATTATAATTATTGTAA
1 TATTATTA-AATTAAT-TAA
14940022 TATT
1 TATT
14940026 GATATATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
18 3 0.08
19 10 0.26
20 6 0.15
21 7 0.18
22 13 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TATTATTAAATTAATTAA
Found at i:14939996 original size:22 final size:22
Alignment explanation
Indices: 14939975--14940017 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14939965 AATTAAATTA
14939975 ATTA-ATATTATTAAAATTATT
1 ATTATATATTATTAAAATTATT
*
14939996 ATTATATATTATTATAATTATT
1 ATTATATATTATTAAAATTATT
14940018 GTAATATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATTATATATTATTAAAATTATT
Found at i:14940024 original size:22 final size:22
Alignment explanation
Indices: 14939979--14940024 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
14939969 AAATTAATTA
*
14939979 ATATTATTAAAATTATTATTAT
1 ATATTATTAAAATTATTATAAT
* *
14940001 ATATTATTATAATTATTGTAAT
1 ATATTATTAAAATTATTATAAT
14940023 AT
1 AT
14940025 TGATATATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
ATATTATTAAAATTATTATAAT
Found at i:14940037 original size:22 final size:19
Alignment explanation
Indices: 14939990--14940040 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
14939980 TATTATTAAA
14939990 ATTATTATTATATATTATT
1 ATTATTATTATATATTATT
* *
14940009 ATAATTATTGTAATATTGATAT
1 ATTATTATTAT-ATATT-AT-T
14940031 ATTATTATTA
1 ATTATTATTA
14940041 CCAATAATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 9 0.36
20 5 0.20
21 2 0.08
22 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (19 bp):
ATTATTATTATATATTATT
Found at i:14940367 original size:23 final size:23
Alignment explanation
Indices: 14940333--14940386 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
14940323 AATTCTTTAT
*
14940333 AATTAA-TT-AAATTAATTAATA
1 AATTAATTTAAAATTAATAAATA
14940354 AATTAATTTAAAATTAATAAATA
1 AATTAATTTAAAATTAATAAATA
* *
14940377 TATTTATTTA
1 AATTAATTTA
14940387 TTACAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 2 0.07
23 20 0.71
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
AATTAATTTAAAATTAATAAATA
Found at i:14940649 original size:16 final size:18
Alignment explanation
Indices: 14940615--14940651 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
14940605 TTGTATAACT
*
14940615 ATTAAATAATAATAGTTA
1 ATTAAATAATAATACTTA
14940633 ATTAAAT-A-AATACTTA
1 ATTAAATAATAATACTTA
14940649 ATT
1 ATT
14940652 TATTTAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 10 0.56
17 1 0.06
18 7 0.39
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTAAATAATAATACTTA
Found at i:14940722 original size:13 final size:14
Alignment explanation
Indices: 14940614--14940724 Score: 54
Period size: 14 Copynumber: 7.9 Consensus size: 14
14940604 TTTGTATAAC
*
14940614 TATTAAATAA-TAA
1 TATTAATTAATTAA
*
14940627 TAGTTAATTAAATAAA
1 TA-TTAATT-AATTAA
*
14940643 TACTTAATTTATTTAACA
1 TA-TTAA-TTAATT-A-A
* **
14940661 TATTAATAAATTCT
1 TATTAATTAATTAA
*
14940675 TATTAATTATTTAA
1 TATTAATTAATTAA
*
14940689 TA-TAA-T-A-GAA
1 TATTAATTAATTAA
14940699 TATTAATTAATTAA
1 TATTAATTAATTAA
14940713 TATT-ATTAATTA
1 TATTAATTAATTA
14940725 TCTAAAATTA
Statistics
Matches: 72, Mismatches: 16, Indels: 20
0.67 0.15 0.19
Matches are distributed among these distances:
10 4 0.06
11 3 0.04
12 2 0.03
13 14 0.19
14 23 0.32
15 2 0.03
16 14 0.19
17 7 0.10
18 3 0.04
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.47
Consensus pattern (14 bp):
TATTAATTAATTAA
Found at i:14940796 original size:22 final size:22
Alignment explanation
Indices: 14940771--14940837 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 22
14940761 TTCAATTGTT
14940771 TAATAAAATTAATATTATTATA
1 TAATAAAATTAATATTATTATA
* *
14940793 TAATTAAATTAATAATA-TA-A
1 TAATAAAATTAATATTATTATA
*
14940813 TAATATAA-T-AT-TTATTATA
1 TAATAAAATTAATATTATTATA
*
14940832 TTATAA
1 TAATAA
14940838 TAGATATTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
17 2 0.06
18 4 0.11
19 6 0.17
20 7 0.19
21 2 0.06
22 15 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TAATAAAATTAATATTATTATA
Found at i:14940799 original size:17 final size:18
Alignment explanation
Indices: 14940771--14940942 Score: 59
Period size: 17 Copynumber: 9.7 Consensus size: 18
14940761 TTCAATTGTT
*
14940771 TAATAAAATTAATATT-A
1 TAATATAATTAATATTAA
*
14940788 TTATATAATTAA-ATTAA
1 TAATATAATTAATATTAA
14940805 TAATATAA-TAATA-TAA
1 TAATATAATTAATATTAA
*
14940821 T-AT-TTATT-ATATT-A
1 TAATATAATTAATATTAA
*
14940835 TAATAGATATTTAAT-TT-A
1 TAAT--ATAATTAATATTAA
14940853 -AATAT--TTAATATATAA
1 TAATATAATTAATAT-TAA
*
14940869 TAATATTATATAATTATCCTAA
1 TAATATAAT-TAA-TAT--TAA
* *
14940891 TAATATTAATCATTATGTTAA
1 TAATA-TAAT--TAATATTAA
*
14940912 TAATATTAAGTAATTATTAA
1 TAATA-TAATTAA-TATTAA
14940932 T-AT-TAATTAAT
1 TAATATAATTAAT
14940943 TATAAATTAA
Statistics
Matches: 120, Mismatches: 14, Indels: 43
0.68 0.08 0.24
Matches are distributed among these distances:
13 5 0.04
14 8 0.07
15 9 0.08
16 12 0.10
17 33 0.28
18 6 0.05
19 7 0.06
20 9 0.08
21 15 0.12
22 8 0.07
23 5 0.04
24 3 0.03
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (18 bp):
TAATATAATTAATATTAA
Found at i:14940912 original size:21 final size:21
Alignment explanation
Indices: 14940866--14940928 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
14940856 ATTTAATATA
14940866 TAATAATATTATATAATTATCC
1 TAATAATATTA-ATAATTATCC
* **
14940888 TAATAATATTAATCATTATGT
1 TAATAATATTAATAATTATCC
14940909 TAATAATATTAAGTAATTAT
1 TAATAATATTAA-TAATTAT
14940929 TAATATTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 19 0.53
22 17 0.47
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (21 bp):
TAATAATATTAATAATTATCC
Found at i:14940943 original size:17 final size:17
Alignment explanation
Indices: 14940912--14940955 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
14940902 ATTATGTTAA
14940912 TAATATTAAGTAATTAT
1 TAATATTAAGTAATTAT
*
14940929 TAATATTAATTAATTA-
1 TAATATTAAGTAATTAT
14940945 TAA-ATTAAGTA
1 TAATATTAAGTA
14940956 CTTTTAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 7 0.28
16 3 0.12
17 15 0.60
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
TAATATTAAGTAATTAT
Found at i:14941069 original size:20 final size:19
Alignment explanation
Indices: 14941018--14941081 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
14941008 AAATATTAGT
*
14941018 TATT-TAATAATTATCAAT
1 TATTATAATAATTATCAAA
14941036 TA-TATGAATAAATTATCCAAA
1 TATTAT-AAT-AATTAT-CAAA
*
14941057 TATTATAATAATTATAATAA
1 TATTATAATAATTATCA-AA
14941077 TATTA
1 TATTA
14941082 GTTATAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 4 0.11
20 19 0.50
21 8 0.21
22 3 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (19 bp):
TATTATAATAATTATCAAA
Found at i:14941200 original size:20 final size:20
Alignment explanation
Indices: 14941175--14941222 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
14941165 TAATTTATTT
*
14941175 ATATTACTTATTAATAATAA
1 ATATTAATTATTAATAATAA
* *
14941195 ATATTAATTATTTATTATAA
1 ATATTAATTATTAATAATAA
14941215 AT-TTAATT
1 ATATTAATT
14941223 TATCACAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
ATATTAATTATTAATAATAA
Found at i:14941707 original size:41 final size:40
Alignment explanation
Indices: 14941655--14941775 Score: 113
Period size: 41 Copynumber: 2.9 Consensus size: 40
14941645 TATTGTTAAG
14941655 AATAATT-AATTATTATATCAATTATT-TTAATAATTAATACAA
1 AATAATTAAATTATTATATCAATTATTATT-ATAATT-AT--AA
14941697 TAATTAAATTAAATTATTATAT-AATTTATTACTTATAATTATAA
1 -AA-T-AATTAAATTATTATATCAA-TTATTA-TTATAATTATAA
* *
14941741 AATAATAAAATTAATATATCAATTATATATTATAA
1 AATAATTAAATTATTATATCAATTAT-TATTATAA
14941776 GATTATAATA
Statistics
Matches: 68, Mismatches: 2, Indels: 18
0.77 0.02 0.20
Matches are distributed among these distances:
41 24 0.35
42 5 0.07
43 4 0.06
44 3 0.04
45 6 0.09
46 18 0.26
47 6 0.09
48 2 0.03
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.45
Consensus pattern (40 bp):
AATAATTAAATTATTATATCAATTATTATTATAATTATAA
Found at i:14941717 original size:46 final size:45
Alignment explanation
Indices: 14941658--14941754 Score: 119
Period size: 46 Copynumber: 2.1 Consensus size: 45
14941648 TGTTAAGAAT
* *
14941658 AATT-AATTATTATATCAA-TTATT-TTAATAATTAATACAATAATTA
1 AATTAAATTATTATAT-AATTTATTATT-ATAATT-ATAAAATAATAA
14941703 AATTAAATTATTATATAATTTATTACTTATAATTATAAAATAATAA
1 AATTAAATTATTATATAATTTATTA-TTATAATTATAAAATAATAA
14941749 AATTAA
1 AATTAA
14941755 TATATCAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
45 6 0.13
46 32 0.70
47 6 0.13
48 2 0.04
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (45 bp):
AATTAAATTATTATATAATTTATTATTATAATTATAAAATAATAA
Found at i:14942388 original size:183 final size:177
Alignment explanation
Indices: 14941989--14942537 Score: 501
Period size: 183 Copynumber: 3.1 Consensus size: 177
14941979 CTATTTATAG
* * *
14941989 AAGCTTATTCGAAATAAAATAATACTAATCTAATAATATTTTGAAAATTAATAACTAAGAGAATT
1 AAGCTTATTCGAAATAAAATAATACTAATCTATTAATATTTTGAAAATCAATAA-TAAGAGATTT
* * * * * * **
14942054 AGAAATA-AATT-TGTTTATCGAACCAGTTTAAATATTTAAGACTACAATAACAATTATCTATTT
65 AAAAAAATAATTCTGTTTATCAAACAAG-TTAAATAATTATGACTA-TTTAACAATTATCTATTT
* *
14942117 TAAAACGTTATGAGC-TTTTGTTTTATCATAAAACAAAAT-TTTCA-ATTCATACT
128 TAAATCGTTATGA-CTTTTTGTTTT-TCAT-AAAC-AAATGTTT-ATGTTCATA-T
* * * **
14942170 -AGCTTATTCAAAATAAAATAA-AATGAATTTATTAATATTTCAAAAATCAATAAGTAAGAGATT
1 AAGCTTATTCGAAATAAAATAATACT-AATCTATTAATATTTTGAAAATCAATAA-TAAGAGATT
* * * *
14942233 TAAAAAAAATAATTCTGTTTACCTAACAAATTCAAATAATTATGACTATTTGAACAATTATGTAT
64 T-AAAAAAATAATTCTGTTTATCAAACAAGTT-AAATAATTATGACTATTT-AACAATTATCTAT
* *
14942298 TTTAAATCATTATGACCTTTTTGTTTTGTCATAAACAAATGTTTTTGTTCATAT
126 TTTAAATCGTTATGA-CTTTTTGTTTT-TCATAAACAAATGTTTATGTTCATAT
* * * *
14942352 AAGTTTATTCGGAATAAAGTAATACTAATCTATTAATATTTTGAAAA-C--TAATAAGATATTT-
1 AAGCTTATTCGAAATAAAATAATACTAATCTATTAATATTTTGAAAATCAATAATAAGAGATTTA
* * ** * * *
14942413 AAAAAATAAATCTATTTATCAAATTAGTTAAATTATTATGACTATTTAACAAATTATTTATTTCA
66 AAAAAATAATTCTGTTTATCAAACAAGTTAAATAATTATGACTATTTAAC-AATTATCTATTTTA
* *
14942478 AATCGTTATGACTTTTTGTTCTTCTATAAA-ATAATTGTTTATGTTCATAC
130 AATCGTTATGACTTTTTGTTTTTC-ATAAACA-AA-TGTTTATGTTCATAT
14942528 AAGCTTATTC
1 AAGCTTATTC
14942538 AATTAATTAA
Statistics
Matches: 303, Mismatches: 50, Indels: 35
0.78 0.13 0.09
Matches are distributed among these distances:
174 3 0.01
175 20 0.07
176 61 0.20
177 22 0.07
179 11 0.04
180 55 0.18
181 5 0.02
182 13 0.04
183 98 0.32
184 15 0.05
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (177 bp):
AAGCTTATTCGAAATAAAATAATACTAATCTATTAATATTTTGAAAATCAATAATAAGAGATTTA
AAAAAATAATTCTGTTTATCAAACAAGTTAAATAATTATGACTATTTAACAATTATCTATTTTAA
ATCGTTATGACTTTTTGTTTTTCATAAACAAATGTTTATGTTCATAT
Found at i:14942706 original size:17 final size:16
Alignment explanation
Indices: 14942678--14942720 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
14942668 GTTATGAATT
14942678 AAATTAATAAATAAATAA
1 AAATT-ATAAATAAAT-A
*
14942696 AAATTATAAATACATA
1 AAATTATAAATAAATA
*
14942712 TAATTATAA
1 AAATTATAA
14942721 TACAAGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 9 0.39
17 9 0.39
18 5 0.22
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTATAAATAAATA
Found at i:14942884 original size:29 final size:30
Alignment explanation
Indices: 14942831--14942973 Score: 88
Period size: 29 Copynumber: 4.8 Consensus size: 30
14942821 ATTAAACAAA
**
14942831 ATATATTAATATAATTTGGTAAATAATGTATT
1 ATATATTAATA-AATTTAAT-AATAATGTATT
* *
14942863 -TATTATTAAT-AATTTAATAATATTGTATA
1 ATA-TATTAATAAATTTAATAATAATGTATT
*
14942892 ATATATT-AT-AATTATAATTAT-AT-TATTT
1 ATATATTAATAAATT-TAATAATAATGTA-TT
14942920 ATATATTAATAAATATTAAT-AT-ATAGTATT
1 ATATATTAATAAAT-TTAATAATAAT-GTATT
* * *
14942950 AT-TATTAATGACTATAATAATAAT
1 ATATATTAATAAATTTAATAATAAT
14942974 TAATATTTGA
Statistics
Matches: 90, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
27 2 0.02
28 19 0.21
29 36 0.40
30 21 0.23
31 5 0.06
32 7 0.08
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATATTAATAAATTTAATAATAATGTATT
Found at i:14943396 original size:15 final size:16
Alignment explanation
Indices: 14943343--14943386 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
14943333 TAATATTTTC
* *
14943343 AATTATATACAACTAGT
1 AATTAT-TACAAATACT
14943360 AATTATTACAAATACT
1 AATTATTACAAATACT
14943376 AATTATTACAA
1 AATTATTACAA
14943387 TATTATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.36
Consensus pattern (16 bp):
AATTATTACAAATACT
Found at i:14943457 original size:25 final size:24
Alignment explanation
Indices: 14943409--14943484 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 24
14943399 ATTAGTATAA
*
14943409 ATTATAATAATTATAATAATAATATT
1 ATTAT-ATAA-TAAAATAATAATATT
14943435 ATTATACTAATAAAATAATAATATT
1 ATTATA-TAATAAAATAATAATATT
* *
14943460 ATTA-ATAATCAAAT-ATTATATT
1 ATTATATAATAAAATAATAATATT
14943482 ATT
1 ATT
14943485 CAGATCATAC
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
22 10 0.22
23 8 0.17
24 1 0.02
25 19 0.41
26 8 0.17
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (24 bp):
ATTATATAATAAAATAATAATATT
Found at i:14943881 original size:24 final size:25
Alignment explanation
Indices: 14943847--14943893 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
14943837 AATCTTAACT
14943847 TAATTAGTATA-ACTAATAATATTAC
1 TAATTAGTATATA-TAATAATATTAC
14943872 TAATTA-TATATATAATAATATT
1 TAATTAGTATATATAATAATATT
14943894 TATTATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (25 bp):
TAATTAGTATATATAATAATATTAC
Found at i:14943887 original size:21 final size:21
Alignment explanation
Indices: 14943862--14943911 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
14943852 AGTATAACTA
*
14943862 ATAATATTACTAATTATATAT
1 ATAATATTACTAATTATAAAT
* * *
14943883 ATAATAATATTTATTATAAAT
1 ATAATATTACTAATTATAAAT
*
14943904 TTAATATT
1 ATAATATT
14943912 TAATAGTTAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAATATTACTAATTATAAAT
Found at i:14944634 original size:23 final size:24
Alignment explanation
Indices: 14944586--14944637 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
14944576 ATATTATAAT
*
14944586 TAATATTATAAATTATTTAATCTA
1 TAATATTATAAATTATTCAATCTA
*
14944610 TAATA-TATTAATTATTCATAT-TA
1 TAATATTATAAATTATTCA-ATCTA
14944633 TAATA
1 TAATA
14944638 AAAAATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (24 bp):
TAATATTATAAATTATTCAATCTA
Found at i:14944638 original size:26 final size:25
Alignment explanation
Indices: 14944576--14944647 Score: 58
Period size: 26 Copynumber: 2.8 Consensus size: 25
14944566 TTCTAATTTA
*
14944576 ATATTATAATTAATATTATAAATTATT
1 ATATTATAA-TAATA-TATTAATTATT
* *
14944603 -TAATCT-ATAATATATTAATTATT
1 ATATTATAATAATATATTAATTATT
* *
14944626 CATATTATAATAAAAAATTAAT
1 -ATATTATAATAATATATTAAT
14944648 AGTATAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
23 10 0.29
24 5 0.14
25 5 0.14
26 15 0.43
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (25 bp):
ATATTATAATAATATATTAATTATT
Found at i:14944834 original size:18 final size:18
Alignment explanation
Indices: 14944813--14944893 Score: 59
Period size: 19 Copynumber: 4.8 Consensus size: 18
14944803 TATTTTATAT
14944813 ATATAATAATAATTATTA
1 ATATAATAATAATTATTA
* *
14944831 ATATTAATATTATTTATTA
1 ATA-TAATAATAATTATTA
* *
14944850 A-ATAA-AACAA-T-TTC
1 ATATAATAATAATTATTA
14944864 AT-TAATAAT-ATTATCTA
1 ATATAATAATAATTAT-TA
14944881 ATATAAT-ATAATT
1 ATATAATAATAATT
14944894 TTATTAATTA
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
14 7 0.15
15 4 0.09
16 3 0.06
17 8 0.17
18 11 0.23
19 14 0.30
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
ATATAATAATAATTATTA
Found at i:14944900 original size:32 final size:30
Alignment explanation
Indices: 14944832--14944909 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 30
14944822 TAATTATTAA
*
14944832 TATTAATATTATTTATTAAATAAAACAATTT
1 TATTAATAATA-TTATTAAATAAAACAATTT
* * *
14944863 CATTAATAATATTATCTAATATAATATAATTT
1 TATTAATAATATTAT-TAA-ATAAAACAATTT
*
14944895 TATTAATTATATTAT
1 TATTAATAATATTAT
14944910 ACTTAAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
30 4 0.10
31 12 0.31
32 23 0.59
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (30 bp):
TATTAATAATATTATTAAATAAAACAATTT
Found at i:14944935 original size:16 final size:16
Alignment explanation
Indices: 14944916--14945004 Score: 60
Period size: 16 Copynumber: 5.4 Consensus size: 16
14944906 TTATACTTAA
14944916 ATTATTATTAAATAAT
1 ATTATTATTAAATAAT
14944932 ATTATTATTTAAATTAAT
1 ATTATTA-TTAAA-TAAT
* * *
14944950 -TTA-AATAAAGATTAAA
1 ATTATTATTAA-A-TAAT
14944966 ATTATTATTAAATAA-
1 ATTATTATTAAATAAT
*
14944981 GTTATTTATT-AATAAAT
1 ATTA-TTATTAAAT-AAT
14944998 ATTATTA
1 ATTATTA
14945005 CTCATAAAAT
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
15 9 0.16
16 26 0.45
17 15 0.26
18 8 0.14
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
ATTATTATTAAATAAT
Found at i:14944936 original size:27 final size:26
Alignment explanation
Indices: 14944890--14944980 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 26
14944880 AATATAATAT
*
14944890 AATT-TTATT-AATTATATTATACTTA
1 AATTATTATTAAATAATATTATA-TTA
14944915 AATTATTATTAAATAATATTATTATTTA
1 AATTATTATTAAATAATATTA-TA-TTA
* * *
14944943 AATTAAT-TTAAATAA-A-GAT-TAA
1 AATTATTATTAAATAATATTATATTA
14944965 AATTATTATTAAATAA
1 AATTATTATTAAATAA
14944981 GTTATTTATT
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
22 8 0.14
23 8 0.14
24 1 0.02
25 5 0.09
26 6 0.11
27 17 0.30
28 11 0.20
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (26 bp):
AATTATTATTAAATAATATTATATTA
Found at i:14946959 original size:181 final size:179
Alignment explanation
Indices: 14946046--14947433 Score: 993
Period size: 181 Copynumber: 7.7 Consensus size: 179
14946036 TATTTTATTG
* * * * *
14946046 ATTTATTTTTTTAAAACTCATGA-TTATTATTTTTTTG-AATGTTAATAAATTAGTATTATTTTC
1 ATTTA-TTTTTTAAATCTC-TTACTTATTA-ATTTTTGAAATATTAATAAATTAGTATTATTTTA
* * * * ** * **
14946109 TTCCAAATAAGCTTATATGAACTA-AAACAATTATTACATGACTAAAGAAAAGGTCATAATGATT
63 ATCTAAATAAGCTTGTATGAA-TAGAAACAATTGTTTTATGAC-AAAAAAAAGGTCATAACAATT
* * * * * *
14946173 TGAAATTA-ATAATTATTCTAATAGTCTTAACTATTTGAACTGGTTTGGTAAATAC
126 TGAAA-TAGATAATTATTCAAATAGTCATAACTATTTGAACT-ATTCGGTAAACAA
* * * *
14946228 ATTTATTTTTTGAATCTC-TA---ATTAATTTTTGGAATATTATTAAATTAGTAATA-TTT-ATC
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATC
* * * * * * * *
14946287 TAAATAAGCTTGTATG-ATCAGAAATAATTATTTTATGAGAAAACATAGATCAAAACAATTTGAG
66 TAAATAAGCTTGTATGAAT-AGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACAATTTGAA
* * * * * * *
14946351 ATTGATATTTATTCAAGTAGCCATAATTATTTGAACTGATTTGGAAAACAA
130 ATAGATAATTATTCAAATAGTCATAACTATTTGAACT-ATTCGGTAAACAA
* * ** * ** * * *
14946402 TTTTAGTTTTTAAAAATCTTGCTTATTAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATC
* * * ** *
14946467 TAGATAAGTTTGTATAAACCGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAACTTT-A
66 TAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAA-AAAAGGTCATAACAA-TTTGA
* * * * * * * *
14946531 AATAGATAATTGTTTAAATAATCA-AATCTATTTTAATTTATTCGATAAATAG
129 AATAGATAATTATTCAAATAGTCATAA-CTATTTGAA-CTATTCGGTAAACAA
* * * *
14946583 ATTTATTTTTTTAAAATCTCATGCTTATTAATTTTCTG-AATGTTAATAAATTAGTATTAATTTA
1 ATTTA-TTTTTT-AAATCTCTTACTTATTAATTTT-TGAAATATTAATAAATTAGTATTATTTTA
* * ** * * * ** *
14946647 TTCTAAATAAGCTTGTATGAATTGAAGTAATTGTTTTGTGACTAAACAAAAGGTCAAAATGATCT
63 ATCTAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGAC-AAAAAAAAGGTCATAACAATTT
* * * * * * *
14946712 GAAATAGATAATTATCCTAATAATCTTAACTATTTGAACTGGTTCGGCAAACAC
127 GAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-ATTCGGTAAACAA
* * * *
14946766 ATTTATTTTTTAAATCTCTTACTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTTAATA
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATC
* ** * * * *
14946831 TGAATAAGCTAATATGAAAAGAAACAATTGTTTTATGACAAAATAAAGATCATAACAATTTGATA
66 TAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACAATTTGAAA
* * * **
14946896 TAAATAATTGTTCAAATAGTCATAAATATTTGAACTATTCCGGTTAATTAA
131 TAGATAATTATTCAAATAGTCATAACTATTTGAACTATT-CGG-TAAACAA
* * * * * * *
14946947 ATTTAGTTTTTAAA--TC-T-CTTATTAATTTTTAAAATATTAATAGATCAATATTATTTTATTT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATC
** ** * * *
14947008 TGAAA-AATTTTACATGAACAGAAACAATTGTTTTATGATAAAAAAAAGGTCATAACTATTTGAA
66 T-AAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACAATTTGAA
* * * * * ** ****
14947072 ATAGATAATTGTTCAAATGGACATGACTATTTGGACTTATTCAATAATTGG
130 ATAGATAATTATTCAAATAGTCATAACTATTTGAAC-TATTCGGTAAACAA
* * * * * * *
14947123 ATTTATTTTTTAAATCTCCTACCTACTT--TCTTTCAAGGTATTAATCAATTAGTATTATTTTAT
1 ATTTATTTTTTAAATCTCTTACTTA-TTAATTTTTGAA-ATATTAATAAATTAGTATTATTTTAA
* * * * * *
14947186 TCCAAATAAACTTGTATGAATAGAAGCAATTGTTTTAGGACAAAACAAAAGATCATAACTATTTG
64 TCTAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAA-AAAAGGTCATAACAATTTG
* * * * * * *
14947251 AAATAAAAAATTATTCAAATAGTCATAACGATTTAAATTAGGTCAGTAAACAA
128 AAATAGATAATTATTCAAATAGTCATAACTATTTGAACTA-TTCGGTAAACAA
* * * *
14947304 ATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT-ATT
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATC
* * * *
14947368 TCAAATATGCTTGTATGAATAGAAACAATTGGTTTATGACAAAACAAAGGGTCATAACTATTTGA
66 T-AAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAA-AAAAGGTCATAACAATTTGA
14947433 A
129 A
14947434 CATGTTCAAA
Statistics
Matches: 933, Mismatches: 234, Indels: 79
0.75 0.19 0.06
Matches are distributed among these distances:
173 2 0.00
174 70 0.08
175 31 0.03
176 27 0.03
177 138 0.15
178 36 0.04
179 18 0.02
180 148 0.16
181 302 0.32
182 29 0.03
183 127 0.14
184 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (179 bp):
ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTAATC
TAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAAAAAGGTCATAACAATTTGAAA
TAGATAATTATTCAAATAGTCATAACTATTTGAACTATTCGGTAAACAA
Found at i:14947140 original size:538 final size:539
Alignment explanation
Indices: 14946045--14947432 Score: 1517
Period size: 538 Copynumber: 2.6 Consensus size: 539
14946035 CTATTTTATT
* * * *
14946045 GATTTATTTTTTTAAAACTCATGATTATTATTTTTTTGAATGTTAATAAATTAGTATTATTTTCT
1 GATTTATTTTTTTAAATCTCATGCTTATTA-TTTTCTGAATGTTAATAAATTAGTATTATTTTAT
* * * * * *** * *
14946110 TCCAAATAAGCTTATATGAACTAAAACAATTATTACATGACTAAAGAAAAGGTCATAATGATTTG
65 TCCAAATAAGCTTGTATGAATTGAAGCAATTGTTTTGTGACTAAACAAAAGGTCAAAATGATTTG
* * *
14946175 AAATTAATAATTATTCTAATAGTCTTAACTATTTGAACTGGTTTGGTAAATACATTTATTTTTTG
130 AAA-TAATAATTATTCTAATAGTCTTAACTATTTGAACTGGTTCGGTAAACACATTTATTTTTTA
* *
14946240 AATCTC-TA---ATTAATTTTTGGAATATTATTAAATTAGTAATA-TTTATCTAAATAAGCTTGT
194 AATCTCTTACTTATTAATTTTTGGAATATTATTAAATTAGTATTATTTTATATAAATAAGCTTGT
** * * * * * ** *
14946300 ATGATCAGAAATAATTATTTTATGAGAAAACATAGATCAAAACAATTTGAGATTGATATTTATTC
259 ATGAAAAGAAACAATTGTTTTATGACAAAACAAAGATCATAACAATTTGAGATAAATAATTATTC
* * * *
14946365 AAGTAGCCATAATTATTTGAACTGATTTGGAAAACAATTTTAGTTTTTAAAAATCTTGCTTATTA
324 AAATAGCCATAAATATTTGAACTGATTCGGAAAACAAATTTAGTTTTT-AAAATCTTGCTTATTA
* * * *
14946430 ATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTTAGATAAGTTTGTATAAACCGAAACAAT
388 ATTTTCAAAATATTAATAAAGTAATATTATTTTATTTTAGAAAAATTTGTATAAACAGAAACAAT
*
14946495 TGTTTTATGATAAAACAAAAGGTCATAACAACTTTAAATAGATAATTGTTTAAATAATCAAATCT
453 TGTTTTATGATAAAACAAAAGGTCATAACAACTTTAAATAGATAATTGTTCAAATAATCAAATCT
* * *
14946560 ATTTTAATTTATTCGATAAATA
518 ATTTGAACTTATTCAATAAATA
*
14946582 GATTTATTTTTTTAAAATCTCATGCTTATTAATTTTCTGAATGTTAATAAATTAGTATTAATTTA
1 GATTTATTTTTTT-AAATCTCATGCTTATT-ATTTTCTGAATGTTAATAAATTAGTATTATTTTA
* * *
14946647 TTCTAAATAAGCTTGTATGAATTGAAGTAATTGTTTTGTGACTAAACAAAAGGTCAAAATGATCT
64 TTCCAAATAAGCTTGTATGAATTGAAGCAATTGTTTTGTGACTAAACAAAAGGTCAAAATGATTT
* * *
14946712 GAAATAGATAATTATCCTAATAATCTTAACTATTTGAACTGGTTCGGCAAACACATTTATTTTTT
129 GAAATA-ATAATTATTCTAATAGTCTTAACTATTTGAACTGGTTCGGTAAACACATTTATTTTTT
* * *
14946777 AAATCTCTTACTTACTAATTTTTGGAATATTATTAAATTAGTATTATTTTAATATGAATAAGCTA
193 AAATCTCTTACTTATTAATTTTTGGAATATTATTAAATTAGTATTATTTT-ATATAAATAAGCTT
* * * *
14946842 ATATGAAAAGAAACAATTGTTTTATGACAAAATAAAGATCATAACAATTTGATATAAATAATTGT
257 GTATGAAAAGAAACAATTGTTTTATGACAAAACAAAGATCATAACAATTTGAGATAAATAATTAT
* * **
14946907 TCAAATAGTCATAAATATTTGAACT-ATTCCGGTTAATTAAATTTAGTTTTT-AAATC-T-CTTA
322 TCAAATAGCCATAAATATTTGAACTGATT-CGG-AAAACAAATTTAGTTTTTAAAATCTTGCTTA
* * *
14946968 TTAATTTTTAAAATATTAATAGA-TCAATATTATTTTATTTT-GAAAAATTT-TACATGAACAGA
385 TTAATTTTCAAAATATTAATAAAGT-AATATTATTTTATTTTAGAAAAATTTGT--ATAAACAGA
* *
14947030 AACAATTGTTTTATGATAAAA-AAAAGGTCATAACTA-TTTGAAATAGATAATTGTTCAAATGGA
447 AACAATTGTTTTATGATAAAACAAAAGGTCATAACAACTTT-AAATAGATAATTGTTCAAAT-AA
* * * *
14947093 -CATGA-CTATTTGGACTTATTCAATAATTG
510 TCA-AATCTATTTGAACTTATTCAATAAATA
* * * * *
14947122 GATTTA-TTTTTTAAATCTCCTACCTACTT-TCTTTC--AAGGTATTAATCAATTAGTATTATTT
1 GATTTATTTTTTTAAATCTCATGCTTA-TTAT-TTTCTGAA--TGTTAATAAATTAGTATTATTT
* * * * *
14947183 TATTCCAAATAAACTTGTATGAATAGAAGCAATTGTTTTAG-GACAAAACAAAAGATCATAACT-
62 TATTCCAAATAAGCTTGTATGAATTGAAGCAATTGTTTT-GTGACTAAACAAAAGGTCA-AAATG
* * * * * * * *
14947246 ATTTGAAATAAAAAATTATTCAAATAGTCATAACGATTTAAATTAGG-TCAGTAAACAAATTTAT
125 ATTTGAAAT-AATAATTATTCTAATAGTCTTAACTATTTGAACT-GGTTCGGTAAACACATTTAT
* * * * * *
14947310 TTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATA
188 TTTTTAAATCTCTTACTTATTAATTTTTGGAATATTATTAAATTAGTATTATTTTATAT-AAATA
* * * * *
14947375 TGCTTGTATGAATAGAAACAATTGGTTTATGACAAAACAAAGGGTCATAACTATTTGA
252 AGCTTGTATGAAAAGAAACAATTGTTTTATGACAAAACAAA-GATCATAACAATTTGA
14947433 ACATGTTCAA
Statistics
Matches: 715, Mismatches: 109, Indels: 52
0.82 0.12 0.06
Matches are distributed among these distances:
536 2 0.00
537 19 0.03
538 378 0.53
539 36 0.05
540 67 0.09
541 70 0.10
542 32 0.04
543 11 0.02
544 86 0.12
545 14 0.02
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (539 bp):
GATTTATTTTTTTAAATCTCATGCTTATTATTTTCTGAATGTTAATAAATTAGTATTATTTTATT
CCAAATAAGCTTGTATGAATTGAAGCAATTGTTTTGTGACTAAACAAAAGGTCAAAATGATTTGA
AATAATAATTATTCTAATAGTCTTAACTATTTGAACTGGTTCGGTAAACACATTTATTTTTTAAA
TCTCTTACTTATTAATTTTTGGAATATTATTAAATTAGTATTATTTTATATAAATAAGCTTGTAT
GAAAAGAAACAATTGTTTTATGACAAAACAAAGATCATAACAATTTGAGATAAATAATTATTCAA
ATAGCCATAAATATTTGAACTGATTCGGAAAACAAATTTAGTTTTTAAAATCTTGCTTATTAATT
TTCAAAATATTAATAAAGTAATATTATTTTATTTTAGAAAAATTTGTATAAACAGAAACAATTGT
TTTATGATAAAACAAAAGGTCATAACAACTTTAAATAGATAATTGTTCAAATAATCAAATCTATT
TGAACTTATTCAATAAATA
Found at i:14947901 original size:317 final size:320
Alignment explanation
Indices: 14947161--14947957 Score: 868
Period size: 317 Copynumber: 2.5 Consensus size: 320
14947151 TCTTTCAAGG
* * * * * *
14947161 TATTAATCAATTAGTATTATTTTATTCCAAATAAACTTGTATGAATAGAAGCAATTGTTTTAGGA
1 TATTAATAAATTAGTATTATTTTATT-AAAATAAGCTTGTATGAAAAGAAACAATTTTTTTAGGA
* * * * * *
14947226 CAAAACAAAAGATCATAACTATTTGAAATAAAAAATTATTCAAATAGTCATAACGATTTAAATTA
65 CAAAACAAAA-ACCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACAATTTAAATTT
* ** * ***
14947291 GGTCAGTAAACAAATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAATATTAATAAATTAG
129 GTTTGGTAAACAAATTTATTTTTAAAATCTCCAACTTATTAATTTTTGAAATATTAATAAATTAG
** * *
14947356 TATTATTTTATTTCAAATATGCTTGTATGAATAGAAACAATTGGTTTATGACAAAACAAAGGGTC
194 TATTATTTTATTTCAAATAAACTTGTATGAATAAAAACAATTGCTTTATGAC--AACAAA--GTC
* * *
14947421 ATAACTATTTGAACATGTTCAAAAAACATATTTATTTTTAAAATTTTTACTTATTAATTTTTGAA
255 ATAACTATTTGAACATGTTCAAAAAACACATTTATTTTTAAAATTCTTACTTACTAATTTTTGAA
14947486 A
320 A
* *
14947487 TATTAATAAATTTA-TATTATTTTATTCAAAATAAGCTTGT-TTAAATA-AAA-ATTTTGTTTTA
1 TATTAATAAA-TTAGTATTATTTTATT-AAAATAAGCTTGTATGAAA-AGAAACAATTT-TTTTA
* * * *
14947548 GGACAAAACAAAATCTCATAACAATTTGAAATAGATAA-TAGTTCAAATGGACATGACAATTTAA
62 GGACAAAACAAAAAC-CATAACAATTTGAAATAGATAATTA-TTCAAATAGTCATAACAATTTAA
*
14947612 ATTTGTTTGGTAAACAAAGTTT-TTTTT-AAATCTCCAACTTATTAATTTTT-AGAATATTAATT
125 ATTTGTTTGGTAAACAAA-TTTATTTTTAAAATCTCCAACTTATTAATTTTTGA-AATATTAATA
* *
14947674 GATTAGTATTATTTTATTTCGAATAAACTTGTATGAATAAAAAC-ATATGCTTTATGAC-A-AAA
188 AATTAGTATTATTTTATTTCAAATAAACTTGTATGAATAAAAACAAT-TGCTTTATGACAACAAA
**** *
14947736 -TC-TAACTATTTGAAC-TGGTTTGGTAAACACATTTATTTTTTAAATCTCTTACTTACTAATTT
252 GTCATAACTATTTGAACAT-GTTCAAAAAACACATTTATTTTTAAAAT-TCTTACTTACTAATTT
*
14947798 TTGGAA
315 TTGAAA
* * * *
14947804 TATTATTAAATTAGTATTATTTTAATATGAATAAGCTTGTATGAAAAGAAACAATTTTTTTATGA
1 TATTAATAAATTAGTATTATTTTATTA-AAATAAGCTTGTATGAAAAGAAACAATTTTTTTAGGA
* * * *
14947869 GAAAATAAAAACCATAACAATTTGATATAGATAATTATTCAAATAGTCATAACTATTTAAA-TTG
65 CAAAACAAAAACCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACAATTTAAATTTG
14947933 TTTCGGTAAACAAATTTAGTTTTTA
130 TTT-GGTAAACAAATTTA-TTTTTA
14947958 TTAATTTTTA
Statistics
Matches: 396, Mismatches: 55, Indels: 47
0.80 0.11 0.09
Matches are distributed among these distances:
315 1 0.00
316 48 0.12
317 104 0.26
318 30 0.08
319 4 0.01
320 3 0.01
321 1 0.00
323 3 0.01
324 82 0.21
325 80 0.20
326 37 0.09
327 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (320 bp):
TATTAATAAATTAGTATTATTTTATTAAAATAAGCTTGTATGAAAAGAAACAATTTTTTTAGGAC
AAAACAAAAACCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACAATTTAAATTTGT
TTGGTAAACAAATTTATTTTTAAAATCTCCAACTTATTAATTTTTGAAATATTAATAAATTAGTA
TTATTTTATTTCAAATAAACTTGTATGAATAAAAACAATTGCTTTATGACAACAAAGTCATAACT
ATTTGAACATGTTCAAAAAACACATTTATTTTTAAAATTCTTACTTACTAATTTTTGAAA
Found at i:14948279 original size:181 final size:181
Alignment explanation
Indices: 14947959--14948442 Score: 485
Period size: 181 Copynumber: 2.7 Consensus size: 181
14947949 TAGTTTTTAT
* * * * * ** ** *
14947959 TAATTTTTAAAATATTAATAGATCAATATTATTTTA-TTCTAAATAATTTTACATGAACAGAAAC
1 TAATTTTTAGAATATTAAGAAATTAGTATTATTTTATTTC-AAATAAACTTGTATGAATAGAAAC
* * * ** *
14948023 AATTGTTTTATGACAAAATAAAAAAGTCATAA-TGATTTAAAATAAATAATTGTTTAAATGGACG
65 AATTGTTTTATGACAAAACAAAAAA-TCATAACT-ATTTGAAATAAATAATTGTTCAAATCAACA
* ***
14948087 TGACTATTTAAACTTGTTCAACAAATAAATTTACTTTTT-AAATCTCCTAC-CTAC
128 TGACGATTTAAACTAACTCAACAAATAAATTTA-TTTTTAAAATCTCCTACTC-AC
* ** * *
14948141 TAATTTTTAGAGTATTAATCAATTAGTATTATTTTATTTCCAATAAACTTGTATGAATAGAAATA
1 TAATTTTTAGAATATTAAGAAATTAGTATTATTTTATTTCAAATAAACTTGTATGAATAGAAACA
*
14948206 ATT-TTTTAGGACAAAACAAAAAATCATAACTAATTTGAAATAAATAATTGTTCAAA-CAATCAT
66 ATTGTTTTATGACAAAACAAAAAATCATAACT-ATTTGAAATAAATAATTGTTCAAATCAA-CAT
* * ** * ** *
14948269 GACGATTTAAACTAACTCCATAAATGGATTTATTTTTAAAATTTTTTACTCAT
129 GACGATTTAAACTAACTCAACAAATAAATTTATTTTTAAAATCTCCTACTCAC
* * *
14948322 TAATTTTTGGAATATTAAGAAATTAGTATTATTTTATTTCAAATACATTTGTATGAATAGAAACA
1 TAATTTTTAGAATATTAAGAAATTAGTATTATTTTATTTCAAATAAACTTGTATGAATAGAAACA
* *** *
14948387 ATTGGTTTATGACAAAACAAAGGGTCATAACTATTTGAAATAGATAATTGTTCAAA
66 ATTGTTTTATGACAAAACAAAAAATCATAACTATTTGAAATAAATAATTGTTCAAA
14948443 AAGTAATAAC
Statistics
Matches: 249, Mismatches: 47, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
180 12 0.05
181 159 0.64
182 75 0.30
183 3 0.01
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (181 bp):
TAATTTTTAGAATATTAAGAAATTAGTATTATTTTATTTCAAATAAACTTGTATGAATAGAAACA
ATTGTTTTATGACAAAACAAAAAATCATAACTATTTGAAATAAATAATTGTTCAAATCAACATGA
CGATTTAAACTAACTCAACAAATAAATTTATTTTTAAAATCTCCTACTCAC
Found at i:14948759 original size:22 final size:21
Alignment explanation
Indices: 14948728--14948768 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
14948718 GATTTTAATT
14948728 ATTATATATTAATATTTATCA
1 ATTATATATTAATATTTATCA
*
14948749 ATTATATTATTAATGTTTAT
1 ATTATA-TATTAATATTTAT
14948769 AAAATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
ATTATATATTAATATTTATCA
Found at i:14948928 original size:31 final size:30
Alignment explanation
Indices: 14948858--14948945 Score: 92
Period size: 31 Copynumber: 3.0 Consensus size: 30
14948848 TTAAGAATAA
* * *
14948858 ATTATTAAAACATTTATTAATT-ATA-ATT
1 ATTATTAAAATATTTAATAATTAATATTTT
*
14948886 ATAATT-AAATATTATAATAATTAATATTTT
1 ATTATTAAAATATT-TAATAATTAATATTTT
*
14948916 ATTATTAAAATATTTAAATAATTATTATTT
1 ATTATTAAAATATTT-AATAATTAATATTT
14948946 ATTTGATTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
27 6 0.12
28 12 0.24
29 3 0.06
30 8 0.16
31 20 0.41
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (30 bp):
ATTATTAAAATATTTAATAATTAATATTTT
Found at i:14949209 original size:18 final size:20
Alignment explanation
Indices: 14949181--14949267 Score: 76
Period size: 21 Copynumber: 4.4 Consensus size: 20
14949171 TAATTTTAAT
*
14949181 TAATATA-TAAATTATTATA
1 TAATATATTAAATTAATATA
14949200 T-ATA-ATTAAATTAATATA
1 TAATATATTAAATTAATATA
* *
14949218 TCAATATATTAAATTTAT-TT
1 T-AATATATTAAATTAATATA
14949238 TAATAATATTATAA-TAATAATA
1 TAAT-ATATTA-AATTAAT-ATA
14949260 TAATATAT
1 TAATATAT
14949268 ATAATAATTT
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
17 1 0.02
18 15 0.27
19 4 0.07
20 14 0.25
21 16 0.29
22 5 0.09
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATATATTAAATTAATATA
Found at i:14949245 original size:22 final size:20
Alignment explanation
Indices: 14949181--14949267 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 20
14949171 TAATTTTAAT
14949181 TAATATA-TAAATTATTATA
1 TAATATATTAAATTATTATA
*
14949200 T-ATA-ATTAAATTAATATA
1 TAATATATTAAATTATTATA
14949218 TCAATATATTAAATTTATT-T-
1 T-AATATATTAAA-TTATTATA
* *
14949238 TAATAATATTATAATAATAATA
1 TAAT-ATATTA-AATTATTATA
14949260 TAATATAT
1 TAATATAT
14949268 ATAATAATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
17 1 0.02
18 15 0.27
19 4 0.07
20 13 0.24
21 14 0.25
22 8 0.15
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (20 bp):
TAATATATTAAATTATTATA
Found at i:14949245 original size:30 final size:30
Alignment explanation
Indices: 14949169--14949251 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
14949159 ATAAACAGTT
14949169 AATA-ATTTTAATTAATATATAAATTATTA
1 AATATATTTTAATTAATATATAAATTATTA
* * * *
14949198 TATATAATTAAATTAATATATCAATATATTA
1 AATATATTTTAATTAATATATAAAT-TATTA
*
14949229 AATTTATTTTAA-TAATATTATAA
1 AATATATTTTAATTAATA-TATAA
14949252 TAATAATATA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
29 3 0.07
30 22 0.52
31 17 0.40
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (30 bp):
AATATATTTTAATTAATATATAAATTATTA
Found at i:14949247 original size:11 final size:11
Alignment explanation
Indices: 14949233--14949279 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
14949223 ATATTAAATT
*
14949233 TATTTTAATAA
1 TATTATAATAA
14949244 TATTATAATAA
1 TATTATAATAA
*
14949255 TAATATAAT-A
1 TATTATAATAA
14949265 TA-TATAATAA
1 TATTATAATAA
14949275 T-TTAT
1 TATTAT
14949280 GGTTAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 6 0.19
10 8 0.25
11 18 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TATTATAATAA
Found at i:14949255 original size:14 final size:15
Alignment explanation
Indices: 14949238--14949279 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
14949228 AAATTTATTT
14949238 TAATAATATTATA-A
1 TAATAATATTATATA
14949252 TAATAATATAATATATA
1 TAATAATAT--TATATA
14949269 TAATAAT-TTAT
1 TAATAATATTAT
14949280 GGTTAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 12 0.48
16 5 0.20
17 8 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAATAATATTATATA
Found at i:14949499 original size:34 final size:34
Alignment explanation
Indices: 14949456--14949520 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
14949446 AGTCATAACG
14949456 ATTTAAATATATTAATAATTAATTAGTTTATACA
1 ATTTAAATATATTAATAATTAATTAGTTTATACA
14949490 ATTTAAATATATTAATAATTAATTAGTTTAT
1 ATTTAAATATATTAATAATTAATTAGTTTAT
14949521 TTAATTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (34 bp):
ATTTAAATATATTAATAATTAATTAGTTTATACA
Found at i:14949851 original size:34 final size:34
Alignment explanation
Indices: 14949805--14949883 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
14949795 AATATTATAC
* *
14949805 TATAA-ATAAAATTATTATAATTATTATAATAAT-T
1 TATAATATAAATTTA-TATAATTAAT-TAATAATAT
*
14949839 TATAATATAAATTTATATAATTAATTAATTATAT
1 TATAATATAAATTTATATAATTAATTAATAATAT
14949873 TATAAT-TAAAT
1 TATAATATAAAT
14949884 AATGAACAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
33 11 0.28
34 21 0.52
35 8 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (34 bp):
TATAATATAAATTTATATAATTAATTAATAATAT
Found at i:14949886 original size:19 final size:19
Alignment explanation
Indices: 14949817--14949886 Score: 60
Period size: 19 Copynumber: 3.9 Consensus size: 19
14949807 TAAATAAAAT
* *
14949817 TATTATAATTATTATAATAA
1 TATTATAATTA-AATAATTA
*
14949837 T-TTATAA-TATA-AATT-
1 TATTATAATTAAATAATTA
*
14949852 TA-TATAATTAATTAATTA
1 TATTATAATTAAATAATTA
14949870 TATTATAATTAAATAAT
1 TATTATAATTAAATAAT
14949887 GAACAAATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
15 6 0.15
16 5 0.12
17 6 0.15
18 4 0.10
19 19 0.46
20 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTATAATTAAATAATTA
Found at i:14950165 original size:31 final size:31
Alignment explanation
Indices: 14950108--14950173 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
14950098 AATTTGTTAT
*
14950108 TAAATAATAAGTATATACTATTATAAT-TTA
1 TAAATAATAAGTATATACTATAATAATATTA
*
14950138 TAAATAAATAATTATTATA-TATAATAATATTA
1 TAAAT-AATAAGTA-TATACTATAATAATATTA
14950170 -AAAT
1 TAAAT
14950174 TTTATACTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 5 0.16
31 19 0.61
32 7 0.23
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (31 bp):
TAAATAATAAGTATATACTATAATAATATTA
Found at i:14950218 original size:24 final size:25
Alignment explanation
Indices: 14950191--14950246 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
14950181 TAATATAAAT
*
14950191 TTATATAAC-AATTATTTATTAAT-A
1 TTATATAACTAATTATATA-TAATGA
*
14950215 TTATAT-ACTAATTATATATATTGA
1 TTATATAACTAATTATATATAATGA
14950239 TTATATAA
1 TTATATAA
14950247 TTATCTCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 5 0.19
24 21 0.78
25 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (25 bp):
TTATATAACTAATTATATATAATGA
Found at i:14950702 original size:17 final size:17
Alignment explanation
Indices: 14950680--14950715 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14950670 AATATTAATT
* *
14950680 ATTTATTATAAATTTTA
1 ATTTATCATAAATATTA
14950697 ATTTATCATAAATATTA
1 ATTTATCATAAATATTA
14950714 AT
1 AT
14950716 AATTACTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTATCATAAATATTA
Found at i:14950956 original size:30 final size:31
Alignment explanation
Indices: 14950893--14950966 Score: 77
Period size: 30 Copynumber: 2.5 Consensus size: 31
14950883 CTTAATTATT
*
14950893 ATTAATATT-TATT-TTTAATATTAAATATAA
1 ATTAAT-TTATATTATTTAATAATAAATATAA
14950923 ATTAATTTATATTATTTAATAATATAA-AT-A
1 ATTAATTTATATTATTTAATAATA-AATATAA
14950953 ATT-ATTATATATTA
1 ATTAATT-TATATTA
14950967 ATCTTTTTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
29 5 0.13
30 21 0.54
31 11 0.28
32 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (31 bp):
ATTAATTTATATTATTTAATAATAAATATAA
Found at i:14951403 original size:15 final size:15
Alignment explanation
Indices: 14951365--14951420 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
14951355 ACTATAAATT
14951365 AATAATAATTATATT-
1 AATAATAATTAT-TTG
*
14951380 ATTTAATAATTA-TTG
1 A-ATAATAATTATTTG
*
14951395 AACTAATAAGTATTTG
1 AA-TAATAATTATTTG
14951411 AATAATAATT
1 AATAATAATT
14951421 TTATATTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 2 0.06
15 17 0.52
16 14 0.42
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (15 bp):
AATAATAATTATTTG
Found at i:14951628 original size:17 final size:18
Alignment explanation
Indices: 14951596--14951629 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14951586 TTATTATTAA
*
14951596 TAAATATAATTAATAATT
1 TAAATATAAATAATAATT
14951614 TAAAT-TAAATAATAAT
1 TAAATATAAATAATAAT
14951630 AATTTGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATATAAATAATAATT
Found at i:14952432 original size:12 final size:11
Alignment explanation
Indices: 14952377--14952481 Score: 59
Period size: 12 Copynumber: 8.5 Consensus size: 11
14952367 TTAATTGGTA
14952377 AATATTTATAATT
1 AATATTT-TAA-T
*
14952390 AATATTTAAAT
1 AATATTTTAAT
*
14952401 TATAATTATTAAT
1 AAT-ATT-TTAAT
14952414 AATTATTTTAAT
1 AA-TATTTTAAT
14952426 GAATATTTTAAT
1 -AATATTTTAAT
14952438 AATCAATTTATTAATT
1 AAT--A-TT-TTAA-T
*
14952454 ATTATTTTAAT
1 AATATTTTAAT
*
14952465 AA-ATTAATAAT
1 AATATT-TTAAT
14952476 AATATT
1 AATATT
14952482 ATATTATTAT
Statistics
Matches: 74, Mismatches: 7, Indels: 23
0.71 0.07 0.22
Matches are distributed among these distances:
10 3 0.04
11 14 0.19
12 26 0.35
13 20 0.27
14 4 0.05
15 4 0.05
16 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (11 bp):
AATATTTTAAT
Found at i:14952458 original size:39 final size:37
Alignment explanation
Indices: 14952379--14952492 Score: 112
Period size: 39 Copynumber: 3.1 Consensus size: 37
14952369 AATTGGTAAA
* *
14952379 TATTTATAATTAATATTTAAATTATAATTATTAATAAT
1 TATTT-TAATGAATATTTAAATAATAATTATTAATAAT
* *
14952417 TATTTTAATGAATATTTTAATAATCAATTTATTAATTAT
1 TATTTTAATGAATATTTAAATAAT-AA-TTATTAATAAT
*
14952456 TATTTTAAT-AA-A-TT-AATAATAA-TATTATATTAT
1 TATTTTAATGAATATTTAAATAATAATTATTA-ATAAT
14952489 TATT
1 TATT
14952493 AGTAATAACA
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
32 5 0.07
33 9 0.13
34 2 0.03
35 6 0.09
36 2 0.03
37 17 0.25
38 9 0.13
39 19 0.28
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.54
Consensus pattern (37 bp):
TATTTTAATGAATATTTAAATAATAATTATTAATAAT
Found at i:14952482 original size:12 final size:12
Alignment explanation
Indices: 14952377--14952500 Score: 51
Period size: 12 Copynumber: 10.2 Consensus size: 12
14952367 TTAATTGGTA
*
14952377 AATATTTATAATT
1 AATATTAATAA-T
*
14952390 AATATTTAAATTAT
1 AATA-TT-AATAAT
14952404 AATTATTAATAAT
1 AA-TATTAATAAT
* *
14952417 TATTTTAATGAAT
1 AATATTAAT-AAT
*
14952430 -ATTTTAATAAT
1 AATATTAATAAT
*
14952441 CAAT-TTATTAATT
1 -AATATTAATAA-T
* *
14952454 ATTATT-TTAAT
1 AATATTAATAAT
14952465 AA-ATTAATAAT
1 AATATTAATAAT
*
14952476 AATATT-ATATT
1 AATATTAATAAT
* *
14952487 ATTATTAGTAAT
1 AATATTAATAAT
14952499 AA
1 AA
14952501 CATATATAGA
Statistics
Matches: 86, Mismatches: 14, Indels: 23
0.70 0.11 0.19
Matches are distributed among these distances:
10 3 0.03
11 20 0.23
12 33 0.38
13 18 0.21
14 7 0.08
15 5 0.06
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.51
Consensus pattern (12 bp):
AATATTAATAAT
Found at i:14952668 original size:22 final size:22
Alignment explanation
Indices: 14952635--14952677 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14952625 CTTTTAGTAA
*
14952635 TATTCAAATAATACTATAATAT
1 TATTCAAATAATACAATAATAT
14952657 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAATAATA
14952678 GTTGTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
TATTCAAATAATACAATAATAT
Found at i:14953121 original size:16 final size:16
Alignment explanation
Indices: 14953097--14953139 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
14953087 TTAATTTTTT
*
14953097 AAATGTTAATAATTAA
1 AAATTTTAATAATTAA
*
14953113 AAATTTTAATATTTAA
1 AAATTTTAATAATTAA
* *
14953129 ATATTTAAATA
1 AAATTTTAATA
14953140 TAATTATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
AAATTTTAATAATTAA
Found at i:14953186 original size:15 final size:15
Alignment explanation
Indices: 14953168--14953197 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14953158 TGTTTGCCTT
*
14953168 ATTAATGTTAAAATA
1 ATTAATATTAAAATA
14953183 ATTAATATTAAAATA
1 ATTAATATTAAAATA
14953198 TAATATATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (15 bp):
ATTAATATTAAAATA
Found at i:14954092 original size:14 final size:14
Alignment explanation
Indices: 14954075--14954101 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14954065 TTTTCCTTAA
14954075 TATATTTTAATAAT
1 TATATTTTAATAAT
14954089 TATATTTTAATAA
1 TATATTTTAATAA
14954102 AATATTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATATTTTAATAAT
Found at i:14954098 original size:24 final size:24
Alignment explanation
Indices: 14954071--14954144 Score: 62
Period size: 24 Copynumber: 3.0 Consensus size: 24
14954061 ATTATTTTCC
14954071 TTAATATATTTTAATAATTATATT
1 TTAATATATTTTAATAATTATATT
* *
14954095 TTAATAAAATATT-A-AATTAATATT
1 TTAAT-ATATTTTAATAATT-ATATT
* *
14954119 TTAATATCAATTATAATATTTATATT
1 TTAATAT--ATTTTAATAATTATATT
14954145 AAATAAATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
23 5 0.13
24 16 0.42
25 8 0.21
26 6 0.16
27 3 0.08
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (24 bp):
TTAATATATTTTAATAATTATATT
Found at i:14954660 original size:21 final size:23
Alignment explanation
Indices: 14954634--14954685 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
14954624 AATTATAAAC
*
14954634 AATTATTAAAT-TTATATTAT-T
1 AATTATTAAATAATATATTATAT
14954655 AATTATT-AATAATATATTATAT
1 AATTATTAAATAATATATTATAT
*
14954677 ACTTATTAA
1 AATTATTAA
14954686 TATTATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 7 0.27
23 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTATTAAATAATATATTATAT
Found at i:14955167 original size:19 final size:20
Alignment explanation
Indices: 14955123--14955176 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
14955113 TACTAAAGTA
* *
14955123 AATTAATAATTATTTAGATT
1 AATTATTAATTAATTAGATT
*
14955143 -AGTATTAATTAATTA-ATT
1 AATTATTAATTAATTAGATT
*
14955161 AATTATTAACTAATTA
1 AATTATTAATTAATTA
14955177 TATATTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 3 0.11
19 25 0.89
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (20 bp):
AATTATTAATTAATTAGATT
Found at i:14955289 original size:19 final size:19
Alignment explanation
Indices: 14955267--14955312 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
14955257 ATAATCCAAC
14955267 TATTATAATTTTATAAATT
1 TATTATAATTTTATAAATT
14955286 TATTATAATTTTATAAATT
1 TATTATAATTTTATAAATT
14955305 TATTATAA
1 TATTATAA
14955313 ACAAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTATAATTTTATAAATT
Done.