Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 81 of 129
Found at i:14955293 original size:11 final size:11
Alignment explanation
Indices: 14955277--14955313 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14955267 TATTATAATT
14955277 TTATAAATTTA
1 TTATAAATTTA
14955288 TTAT-AA-TT-
1 TTATAAATTTA
14955296 TTATAAATTTA
1 TTATAAATTTA
14955307 TTATAAA
1 TTATAAA
14955314 CAAATAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 4 0.17
9 4 0.17
10 4 0.17
11 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
TTATAAATTTA
Found at i:14955474 original size:20 final size:21
Alignment explanation
Indices: 14955441--14955498 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
14955431 AAATAAATTC
*
14955441 ATTATA-TAATTTATTAATA-G
1 ATTATATTAA-TTATTAATATA
*
14955461 ATTATATTTATTA-TAATATA
1 ATTATATTAATTATTAATATA
*
14955481 ATTATATTAATAATTAAT
1 ATTATATTAATTATTAAT
14955499 TATTAAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 5 0.16
20 20 0.65
21 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
ATTATATTAATTATTAATATA
Found at i:14955727 original size:16 final size:17
Alignment explanation
Indices: 14955708--14955739 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
14955698 TTATTCATAA
14955708 AACTAATTA-TAATTAG
1 AACTAATTATTAATTAG
14955724 AACTAATTATTAATTA
1 AACTAATTATTAATTA
14955740 AACATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (17 bp):
AACTAATTATTAATTAG
Found at i:14955832 original size:14 final size:13
Alignment explanation
Indices: 14955811--14955849 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
14955801 TATAAATTAT
14955811 AAATTAATTATAA
1 AAATTAATTATAA
14955824 AATATTAATTAGTAA
1 AA-ATTAATTA-TAA
*
14955839 TAATTAATTAT
1 AAATTAATTAT
14955850 TATCATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 3 0.13
14 16 0.70
15 4 0.17
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
AAATTAATTATAA
Found at i:14956080 original size:15 final size:15
Alignment explanation
Indices: 14956036--14956102 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
14956026 ACTATTATAG
*
14956036 TTAATATTATCAA-A
1 TTAATATTATTAATA
14956050 -TAATA-TATTAATTA
1 TTAATATTATTAA-TA
14956064 TTAATATTATTAATA
1 TTAATATTATTAATA
*
14956079 TTTAA-ATTAATAATA
1 -TTAATATTATTAATA
14956094 -TAAT-TTATT
1 TTAATATTATT
14956103 TAGATTACTA
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
12 5 0.11
13 12 0.27
14 1 0.02
15 16 0.36
16 10 0.23
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (15 bp):
TTAATATTATTAATA
Found at i:14956221 original size:19 final size:21
Alignment explanation
Indices: 14956170--14956222 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 21
14956160 ATTAGTTACA
14956170 AATAAAATA-TAATTAATATT
1 AATAAAATATTAATTAATATT
14956190 AAT-AAATATT-ATTAATAAATT
1 AATAAAATATTAATTAAT--ATT
14956211 AATAAAATATTA
1 AATAAAATATTA
14956223 TTTTATAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
19 11 0.39
20 4 0.14
21 6 0.21
22 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AATAAAATATTAATTAATATT
Found at i:14956339 original size:26 final size:23
Alignment explanation
Indices: 14956307--14956391 Score: 70
Period size: 24 Copynumber: 3.6 Consensus size: 23
14956297 TAATCATGTG
14956307 AAATATTTATATTAATAGATATAAT
1 AAATATTTATATTAATA-AT-TAAT
14956332 -AATATATTAGTATTAATAATTAAT
1 AAATAT-TTA-TATTAATAATTAAT
*
14956356 AAAAATTTAT-TTATTATAACTT-AT
1 AAATATTTATATTA--ATAA-TTAAT
14956380 AAA-ATTTATATT
1 AAATATTTATATT
14956392 TGAATAAATT
Statistics
Matches: 52, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
22 3 0.06
23 7 0.13
24 23 0.44
25 11 0.21
26 8 0.15
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.47
Consensus pattern (23 bp):
AAATATTTATATTAATAATTAAT
Found at i:14956374 original size:24 final size:24
Alignment explanation
Indices: 14956342--14956388 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
14956332 AATATATTAG
14956342 TATTAATAA-TTAATAAAAATTTATT
1 TATTAATAACTT-AT-AAAATTTATT
14956367 TATT-ATAACTTATAAAATTTAT
1 TATTAATAACTTATAAAATTTAT
14956389 ATTTGAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 9 0.43
24 6 0.29
25 6 0.29
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TATTAATAACTTATAAAATTTATT
Found at i:14956702 original size:19 final size:18
Alignment explanation
Indices: 14956674--14956715 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
14956664 TTATTTGGAT
*
14956674 ATTATTATTAATTAGTATA
1 ATTATAATTAATTA-TATA
14956693 ATTATAATTAATTATATA
1 ATTATAATTAATTATATA
14956711 ATTAT
1 ATTAT
14956716 TTAAATCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATTATAATTAATTATATA
Found at i:14956719 original size:16 final size:16
Alignment explanation
Indices: 14956672--14956719 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
14956662 ATTTATTTGG
*
14956672 ATATTATTA-TTAATT
1 ATATAATTATTTAATT
14956687 AGTATAATTATAATTAATT
1 A-TATAATTAT--TTAATT
14956706 ATATAATTATTTAA
1 ATATAATTATTTAA
14956720 ATCATAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 1 0.04
16 11 0.39
18 9 0.32
19 7 0.25
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATAATTATTTAATT
Found at i:14957691 original size:28 final size:28
Alignment explanation
Indices: 14957621--14957719 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 28
14957611 TATTTTAATA
14957621 TAATAATAATT-TATTAAT-TTAAGCTATAT
1 TAATAATAATTATATTAATATT-A--TATAT
* **
14957650 TAATAACACCTATATTAATATTATATAT
1 TAATAATAATTATATTAATATTATATAT
*
14957678 TAATAATAATTATAAATAATATTAT-TAT
1 TAATAATAATTAT-ATTAATATTATATAT
14957706 TAA-AATGAATTATA
1 TAATAAT-AATTATA
14957720 ATATAACCAT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
27 4 0.07
28 27 0.46
29 18 0.31
30 8 0.14
31 2 0.03
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (28 bp):
TAATAATAATTATATTAATATTATATAT
Found at i:14957946 original size:12 final size:12
Alignment explanation
Indices: 14957929--14957960 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
14957919 TATTTAAGTT
14957929 ATAATTATTAAA
1 ATAATTATTAAA
*
14957941 ATAATTAATAAA
1 ATAATTATTAAA
14957953 ATAATTAT
1 ATAATTAT
14957961 AATTTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATTATTAAA
Found at i:14958008 original size:16 final size:17
Alignment explanation
Indices: 14957953--14958012 Score: 54
Period size: 17 Copynumber: 3.7 Consensus size: 17
14957943 AATTAATAAA
*
14957953 ATAA-TTATAA-TTTAT
1 ATAATTTATAATTTTTT
* * *
14957968 ATAACTAATACTTTTTT
1 ATAATTTATAATTTTTT
14957985 ATAATTTATAATTTTTT
1 ATAATTTATAATTTTTT
*
14958002 -TATTTTATAAT
1 ATAATTTATAAT
14958013 AAATTAATAG
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
15 4 0.11
16 14 0.39
17 18 0.50
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
ATAATTTATAATTTTTT
Found at i:14958145 original size:10 final size:10
Alignment explanation
Indices: 14958115--14958153 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
14958105 TTTGTAATTA
14958115 AATTATTAATT
1 AATTATT-ATT
*
14958126 AAAATATTATT
1 -AATTATTATT
14958137 AATTATTATT
1 AATTATTATT
14958147 AATTATT
1 AATTATT
14958154 TAGCGTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 3 0.12
12 6 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
AATTATTATT
Found at i:14958587 original size:20 final size:20
Alignment explanation
Indices: 14958564--14958616 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 20
14958554 TATTAATAGT
*
14958564 AATTATTAATATTTATGATA
1 AATTATTAATATTTATAATA
14958584 AATTA--AA-ATTTATAATA
1 AATTATTAATATTTATAATA
*
14958601 AATAATTAATATTTAT
1 AATTATTAATATTTAT
14958617 TATTAATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 13 0.46
18 2 0.07
19 2 0.07
20 11 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
AATTATTAATATTTATAATA
Found at i:14958624 original size:20 final size:20
Alignment explanation
Indices: 14958563--14958632 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
14958553 ATATTAATAG
* *
14958563 TAATTATTAATATTTATGA-
1 TAATAATTAATATTTATAAT
*
14958582 T-A-AATTAAAATTTATAAT
1 TAATAATTAATATTTATAAT
* *
14958600 AAATAATTAATATTTATTAT
1 TAATAATTAATATTTATAAT
*
14958620 TAATAAGTAATAT
1 TAATAATTAATAT
14958633 AAATAAATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
17 12 0.30
18 1 0.03
19 2 0.05
20 25 0.62
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAATAATTAATATTTATAAT
Found at i:14958980 original size:12 final size:12
Alignment explanation
Indices: 14958956--14959004 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
14958946 GAAATCTAAG
14958956 ATAATTAATAATA
1 ATAATT-ATAATA
*
14958969 TTAATTATAATA
1 ATAATTATAATA
14958981 ATAATTA-AAT-
1 ATAATTATAATA
*
14958991 A-AATTATATTA
1 ATAATTATAATA
14959002 ATA
1 ATA
14959005 TAATTATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 4 0.13
12 13 0.43
13 5 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATAATTATAATA
Found at i:14959001 original size:14 final size:14
Alignment explanation
Indices: 14958957--14959011 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
14958947 AAATCTAAGA
*
14958957 TAAT-TAATAATAT
1 TAATATAATTATAT
*
14958970 TAATTATAATAATAAT
1 TAA-TATAATTAT-AT
14958986 TAA-ATAAATTATAT
1 TAATAT-AATTATAT
14959000 TAATATAATTAT
1 TAATATAATTAT
14959012 TTATTGAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 3 0.08
14 14 0.39
15 14 0.39
16 5 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATATAATTATAT
Found at i:14959136 original size:16 final size:16
Alignment explanation
Indices: 14959083--14959169 Score: 70
Period size: 16 Copynumber: 5.2 Consensus size: 16
14959073 TATAATAATA
14959083 TAATATTATTAATTGT-T
1 TAATATTA-TAATT-TAT
*
14959100 TAATTATT-TAAATTAT
1 TAA-TATTATAATTTAT
14959116 TAATATTATAATTTAT
1 TAATATTATAATTTAT
* *
14959132 TAATATAAACTAATTTAA
1 TAATAT-TA-TAATTTAT
* *
14959150 TAATATAACAATTTAT
1 TAATATTATAATTTAT
14959166 TAAT
1 TAAT
14959170 TAATATTTCT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
15 5 0.08
16 31 0.53
17 6 0.10
18 17 0.29
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (16 bp):
TAATATTATAATTTAT
Found at i:14959256 original size:15 final size:17
Alignment explanation
Indices: 14959236--14959270 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14959226 AATATATAAT
14959236 TATAAT-TTAA-AATTA
1 TATAATATTAACAATTA
14959251 TATAATATTAACAATTA
1 TATAATATTAACAATTA
14959268 TAT
1 TAT
14959271 TTATATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 4 0.22
17 8 0.44
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
TATAATATTAACAATTA
Found at i:14959299 original size:38 final size:38
Alignment explanation
Indices: 14959257--14959331 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
14959247 ATTATATAAT
*
14959257 ATTAA-CAATTATATTTATATATAATTA-TAAGTTAGTTA
1 ATTAATCAA-TAT-TTTATATATAATTATTAAATTAGTTA
* *
14959295 ATTAATTAATATTTTATATATTATTATTAAATTAGTT
1 ATTAATCAATATTTTATATATAATTATTAAATTAGTT
14959332 TAATATTTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 13 0.41
38 17 0.53
39 2 0.06
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (38 bp):
ATTAATCAATATTTTATATATAATTATTAAATTAGTTA
Found at i:14959335 original size:35 final size:34
Alignment explanation
Indices: 14959263--14959331 Score: 84
Period size: 37 Copynumber: 1.9 Consensus size: 34
14959253 TAATATTAAC
*
14959263 AATTATATTTATATATAATTATAAGTTAGTTAATT
1 AATTATATTTATATATAATTATAAATTAGTT-ATT
*
14959298 AATTAATATTTTATATATTATTATTAAATTAGTT
1 AATT-ATA-TTTATATATAATTA-TAAATTAGTT
14959332 TAATATTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
35 4 0.14
36 3 0.10
37 13 0.45
38 9 0.31
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (34 bp):
AATTATATTTATATATAATTATAAATTAGTTATT
Found at i:14959359 original size:22 final size:23
Alignment explanation
Indices: 14959307--14959363 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
14959297 TAATTAATAT
*
14959307 TTTATATATTATTATTAAATTAG
1 TTTATATATTATAATTAAATTAG
*
14959330 TTTA-ATATTTCATAATTATATT-G
1 TTTATATA-TT-ATAATTAAATTAG
14959353 TTTATATATTA
1 TTTATATATTA
14959364 ATAAATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
22 4 0.14
23 13 0.45
24 12 0.41
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTATATATTATAATTAAATTAG
Found at i:14959620 original size:24 final size:24
Alignment explanation
Indices: 14959582--14959655 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 24
14959572 TACAATACCA
14959582 ATTAACATTAG-TATAATATTAATT
1 ATTAA-ATTAGTTATAATATTAATT
* *
14959606 ATTAAATTAGTTATAATAATAAAT
1 ATTAAATTAGTTATAATATTAATT
14959630 ATT-AATTA-TTATAATACTTATATT
1 ATTAAATTAGTTATAATA-TTA-ATT
14959654 AT
1 AT
14959656 ATCTATATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
22 8 0.19
23 12 0.28
24 23 0.53
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (24 bp):
ATTAAATTAGTTATAATATTAATT
Found at i:14959703 original size:47 final size:45
Alignment explanation
Indices: 14959588--14959716 Score: 115
Period size: 46 Copynumber: 2.8 Consensus size: 45
14959578 ACCAATTAAC
* *
14959588 ATTAGTATAATATTAATTATTA-AATTAGTTATAATAAT-AAATATTA
1 ATTATTATAATACTAA-TATTATAATTA--TATAATAATAAAATATTA
*
14959634 ATTATTATAATACTTATATTAT-ATCTATATAATAATAAAATAATTA
1 ATTATTATAATACTAATATTATAAT-TATATAATAATAAAAT-ATTA
* *
14959680 A-TATTTTAAATAACTAATTTTATAATTATAT-ATAATA
1 ATTATTAT-AAT-ACTAATATTATAATTATATAATAATA
14959717 TTAATAATAA
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
44 9 0.13
45 16 0.23
46 29 0.41
47 14 0.20
48 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (45 bp):
ATTATTATAATACTAATATTATAATTATATAATAATAAAATATTA
Found at i:14960305 original size:22 final size:24
Alignment explanation
Indices: 14960224--14960312 Score: 75
Period size: 22 Copynumber: 3.8 Consensus size: 24
14960214 AATATTTAAA
14960224 TAATTA-AT-TAATAAT-TATAA-T
1 TAATTATATATAATAATAT-TAACT
* *
14960245 TATTTATAT-TATTAATATTAACT
1 TAATTATATATAATAATATTAACT
14960268 TAATTAGTATAAATAATAATATT-AC-
1 TAATTA-TAT--ATAATAATATTAACT
14960293 TAATTATATATAATAATATT
1 TAATTATATATAATAATATT
14960313 TATTATAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
21 5 0.09
22 22 0.39
23 7 0.12
24 6 0.11
25 6 0.11
26 2 0.04
27 9 0.16
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (24 bp):
TAATTATATATAATAATATTAACT
Found at i:14960321 original size:15 final size:15
Alignment explanation
Indices: 14960296--14960362 Score: 53
Period size: 17 Copynumber: 4.0 Consensus size: 15
14960286 ATATTACTAA
14960296 TTATATATAATAATAT
1 TTAT-TATAATAATAT
14960312 TTATTATAATTTAATAT
1 TTATTATAA--TAATAT
*
14960329 TTAATAGTTATATAAATAT
1 TTATTA--TA-AT-AATAT
*
14960348 TAATTATAATAATAT
1 TTATTATAATAATAT
14960363 ATATCATTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
15 10 0.24
16 6 0.14
17 13 0.31
18 1 0.02
19 11 0.26
20 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (15 bp):
TTATTATAATAATAT
Found at i:14960357 original size:24 final size:24
Alignment explanation
Indices: 14960287--14960358 Score: 60
Period size: 24 Copynumber: 2.9 Consensus size: 24
14960277 TAAATAATAA
*
14960287 TATTACTAA-TTATATATAATAATATT
1 TATTA-TAATTTA-ATAT-ATAATAGT
*
14960313 TATTATAATTTAATATTTAATAGT
1 TATTATAATTTAATATATAATAGT
14960337 TA-TATAAATATTAAT-TATAATA
1 TATTAT-AAT-TTAATATATAATA
14960359 ATATATATCA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 3 0.08
24 17 0.43
25 12 0.30
26 8 0.20
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (24 bp):
TATTATAATTTAATATATAATAGT
Found at i:14964124 original size:182 final size:180
Alignment explanation
Indices: 14963830--14964258 Score: 460
Period size: 182 Copynumber: 2.4 Consensus size: 180
14963820 ATAAATAGAA
** * *
14963830 TTATTTTTTAAATTTCTTACTTATTATTTTTTGTAATATTAATAAATTCATTTTATTTTATTTCG
1 TTATTTTTTAAATCCCTTACTTATTAATTTTTGGAATATTAATAAATTCATTTTATTTTATTTCG
** *
14963895 AATAACCTAGTATGAATTGAGAAAATTTTTTTATGACAAGACAAAAGGTCATAACGATTCGGAA-
66 AATAACCTAGTATGAACAGAGAAAATTATTTTATGACAAGACAAAAGGTCATAACGATT-GGAAG
* * *
14963959 TAGATAATTGTTCATATAGTCTTAACTATTTGAATTTTTCGGCAAACAAAT
130 TAGAGAATTGTTCAAATAGTCATAACTATTTGAATTTTTCGGCAAACAAAT
* * * * *
14964010 TTATTTTTTAAATCCCTTAGTTATTAATTTTTGGAATATTATTAGATTAGTATTTTTTTTTATTT
1 TTATTTTTTAAATCCCTTACTTATTAATTTTTGGAATATTAATAAATT--CATTTTATTTTATTT
* * * * * * *
14964075 TGAATAAGCTTGTATGAACAGA-AATAATTATTTTATGATATA-ACAAAAGGTTATAATGATTTG
64 CGAATAACCTAGTATGAACAGAGAA-AATTATTTTATGACA-AGACAAAAGGTCATAACGATTGG
* * * * * *
14964138 AAGTATAGAATTGTTCAAATAGTCATAACTATTTGAATTGATTCAGTAAATAGAT
127 AAGTAGAGAATTGTTCAAATAGTCATAACTATTTGAATT-TTTCGGCAAACAAAT
* * *
14964193 TCATTTTTTAAAT--C-T-CTTATTAATTTTTGAAAGATTAATAAATT-ATTATTATTTTATTTC
1 TTATTTTTTAAATCCCTTACTTATTAATTTTTGGAATATTAATAAATTCATT-TTATTTTATTTC
14964253 GAATAA
65 GAATAA
14964259 TCATGTATGA
Statistics
Matches: 206, Mismatches: 36, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
176 3 0.01
177 16 0.08
179 24 0.12
180 42 0.20
181 6 0.03
182 92 0.45
183 23 0.11
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.46
Consensus pattern (180 bp):
TTATTTTTTAAATCCCTTACTTATTAATTTTTGGAATATTAATAAATTCATTTTATTTTATTTCG
AATAACCTAGTATGAACAGAGAAAATTATTTTATGACAAGACAAAAGGTCATAACGATTGGAAGT
AGAGAATTGTTCAAATAGTCATAACTATTTGAATTTTTCGGCAAACAAAT
Found at i:14965439 original size:6 final size:6
Alignment explanation
Indices: 14965428--14965466 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
14965418 TCAATATTGT
* *
14965428 TTAATA TTAATA CTAAT- TTAATA TTGATA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
14965467 GCTTTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:14965449 original size:17 final size:17
Alignment explanation
Indices: 14965427--14965466 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
14965417 ATCAATATTG
14965427 TTTAATATTAATACTAA
1 TTTAATATTAATACTAA
* *
14965444 TTTAATATTGATATTAA
1 TTTAATATTAATACTAA
14965461 TATTAA
1 T-TTAA
14965467 GCTTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTAATATTAATACTAA
Found at i:14966424 original size:182 final size:181
Alignment explanation
Indices: 14965883--14966506 Score: 764
Period size: 182 Copynumber: 3.5 Consensus size: 181
14965873 TTAGTCATTC
* * * *
14965883 ATTTTT-AGAATATTGCTAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TAGAAACA
1 ATTTTTGA-AATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTA-AAACA
*** * * * **
14965946 ATTATTTTATGATGGAACAAAAGGTTGTAACAATTTGAAATAGAAAATTGTTCAAAT-AATCATA
64 ATTATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAG-ATATTGTTTAAATGGCT-ATA
* * *** *
14966010 ACTATTTTAACT-AGTTCAATAAACTGATTTA-TTTTTTAAA-T-G-T-CTTATTA
127 ATTATTTGAACTGA-TTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
* * * * * * ****
14966060 ATTCTTAAAATATTAATAAATTGA-TATTATTTTATTTCAAATAAGCTTGTATGTTGAAAAACAA
1 ATTTTTGAAATATTACTAAAGT-ACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAA
*
14966124 TTGTTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAGATATTGTTTAAATGGCTATAATT
65 TTATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAGATATTGTTTAAATGGCTATAATT
14966189 ATTTGAACTGATTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
130 ATTTGAACTGATTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
* * * *
14966241 ATTTTTGAAATATTACTAAAGTACTGTTATTTTATTTTGGATAAACTTTTATGAACTAAAACAAT
1 ATTTTTGAAATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAAT
* *
14966306 TATTTTATGACAAAATAAAAGGTAGTAACAATTTAAAATAGATAGTTGTTTAAATGGCTATAATT
66 TATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAGATA-TTGTTTAAATGGCTATAATT
14966371 ATTTGAACTGATTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
130 ATTTGAACTGATTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
* * * *
14966423 ATTTTTGAAATATTACTAAAGTACTGTTATTTTATTTTGGATAAACTTTTATGAACTAAAACAAT
1 ATTTTTGAAATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAAT
14966488 TATTTTATGACAAAACAAA
66 TATTTTATGACAAAACAAA
14966507 TGGTCATAAT
Statistics
Matches: 395, Mismatches: 40, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
176 38 0.10
177 98 0.25
178 4 0.01
179 1 0.00
180 2 0.01
181 97 0.25
182 155 0.39
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.42
Consensus pattern (181 bp):
ATTTTTGAAATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAAT
TATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAGATATTGTTTAAATGGCTATAATTA
TTTGAACTGATTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
Found at i:14966553 original size:182 final size:182
Alignment explanation
Indices: 14965883--14966580 Score: 754
Period size: 182 Copynumber: 3.9 Consensus size: 182
14965873 TTAGTCATTC
* * * *
14965883 ATTTTT-AGAATATTGCTAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-TAGAAACA
1 ATTTTTGA-AATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTA-AAACA
*** * **
14965946 ATTATTTTATGATGGAACAAAAGGTTGTAACAATTTGAAATAGAA-AATTGTTCAAATAATCATA
64 ATTATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATA-AATAATTGTTCAAATAGCCATA
* * * *
14966010 ACTATTTTAACT-AGTTCAATAAACTGATTTA-TTTTTTAAA-T-G-T-CTTATTA
128 ATTATTTGAACTGA-TTCAGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
* * * * * * ****
14966060 ATTCTTAAAATATTAATAAATTGA-TATTATTTTATTTCAAATAAGCTTGTATGTTGAAAAACAA
1 ATTTTTGAAATATTACTAAAGT-ACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAA
* * * * *
14966124 TTGTTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAGAT-ATTGTTTAAATGGCTATAAT
65 TTATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAAATAATTGTTCAAATAGCCATAAT
**
14966188 TATTTGAACTGATTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
130 TATTTGAACTGATTCAGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
* * * *
14966241 ATTTTTGAAATATTACTAAAGTACTGTTATTTTATTTTGGATAAACTTTTATGAACTAAAACAAT
1 ATTTTTGAAATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAAT
* * * * * * *
14966306 TATTTTATGACAAAATAAAAGGTAGTAACAATTTAAAATAGATAGTTGTTTAAATGGCTATAATT
66 TATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAAATAATTGTTCAAATAGCCATAATT
**
14966371 ATTTGAACTGATTGGGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
131 ATTTGAACTGATTCAGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
* * * *
14966423 ATTTTTGAAATATTACTAAAGTACTGTTATTTTATTTTGGATAAACTTTTATGAACTAAAACAAT
1 ATTTTTGAAATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAAT
* ** *
14966488 TATTTTATGACAAAACAAATGGTCA-TAATTATTTTAAATAAATAATTGTTCAAATAGCCATAAT
66 TATTTTATGACAAAACAAAAGGT-AGTAACAATTTGAAATAAATAATTGTTCAAATAGCCATAAT
* * * *
14966552 TAGTTAAACTTATTCAGTAAACAGATTTA
130 TATTTGAACTGATTCAGTAAACTGATTTA
14966581 AAAGGTATAG
Statistics
Matches: 450, Mismatches: 58, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
176 38 0.08
177 96 0.21
178 4 0.01
179 1 0.00
180 2 0.00
181 96 0.21
182 212 0.47
183 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (182 bp):
ATTTTTGAAATATTACTAAAGTACTATTATTTTATTTCGAATAAACTTGTATGAACTAAAACAAT
TATTTTATGACAAAACAAAAGGTAGTAACAATTTGAAATAAATAATTGTTCAAATAGCCATAATT
ATTTGAACTGATTCAGTAAACTGATTTACTCTTTTAAATTAGTTACTTATTA
Found at i:14967072 original size:13 final size:14
Alignment explanation
Indices: 14967039--14967086 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
14967029 GATATCTTTT
*
14967039 AATAAATAAAAATC
1 AATAATTAAAAATC
*
14967053 AATAATTAAAAATT
1 AATAATTAAAAATC
14967067 AA-AATT-AAAATC
1 AATAATTAAAAATC
14967079 AAT-ATTAA
1 AATAATTAA
14967087 GATAATTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 10 0.34
13 5 0.17
14 14 0.48
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (14 bp):
AATAATTAAAAATC
Found at i:14967076 original size:26 final size:27
Alignment explanation
Indices: 14967042--14967102 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 27
14967032 ATCTTTTAAT
14967042 AAATAAAAATCAATAATTAA-A-AATTA
1 AAATAAAAATCAAT-ATTAAGATAATTA
*
14967068 AAATTAAAATCAATATTAAGATAATTA
1 AAATAAAAATCAATATTAAGATAATTA
14967095 ATAATAAA
1 A-AATAAA
14967103 TTATAAGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 5 0.17
26 14 0.47
27 6 0.20
28 5 0.17
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.30
Consensus pattern (27 bp):
AAATAAAAATCAATATTAAGATAATTA
Found at i:14967699 original size:30 final size:30
Alignment explanation
Indices: 14967665--14967732 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
14967655 TAATAATATT
14967665 ATATTATAATATTGAATA-AAAATTATTATA
1 ATATTATAATATTGAATATAAAATTATTA-A
* * * **
14967695 ATATTATTATTTTTAATATTTAATTATTAA
1 ATATTATAATATTGAATATAAAATTATTAA
14967725 ATATTATA
1 ATATTATA
14967733 TTAAATTAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
30 23 0.74
31 8 0.26
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (30 bp):
ATATTATAATATTGAATATAAAATTATTAA
Found at i:14967727 original size:15 final size:16
Alignment explanation
Indices: 14967665--14967732 Score: 56
Period size: 15 Copynumber: 4.5 Consensus size: 16
14967655 TAATAATATT
*
14967665 ATATTATAA-TATTGA
1 ATATTATAATTATTAA
*
14967680 ATA--AAAATTATTATA
1 ATATTATAATTATTA-A
* *
14967695 ATATTATTATT-TTTA
1 ATATTATAATTATTAA
14967710 ATATT-TAATTATTAA
1 ATATTATAATTATTAA
14967725 ATATTATA
1 ATATTATA
14967733 TTAAATTAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
13 3 0.08
14 8 0.20
15 21 0.52
16 4 0.10
17 4 0.10
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (16 bp):
ATATTATAATTATTAA
Found at i:14967730 original size:38 final size:38
Alignment explanation
Indices: 14967644--14967740 Score: 92
Period size: 38 Copynumber: 2.6 Consensus size: 38
14967634 ATGATTATAT
*
14967644 TTAATTATATATAATAATATTATATTATAATATTGAATA
1 TTAAATAT-TATAATAATATTATATTATAATATTGAATA
* * * *
14967683 -AAAATTATTATAATATTATTAT-TTTTAATATTTAATTA
1 TTAAA-TATTATAATAATATTATATTATAATATTGAA-TA
*
14967721 TTAAATATTATATTAA-ATTA
1 TTAAATATTATAATAATATTA
14967741 GTATAATTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
37 15 0.32
38 26 0.55
39 6 0.13
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (38 bp):
TTAAATATTATAATAATATTATATTATAATATTGAATA
Found at i:14968231 original size:21 final size:21
Alignment explanation
Indices: 14968201--14968251 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
14968191 AATATTTTTA
14968201 AATA-TTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
14968221 AATATTTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
14968242 AATATTTTAT
1 AATATTTTAT
14968252 TAATTTCGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AATATTTTATATTTAAAAAAT
Found at i:14969145 original size:15 final size:16
Alignment explanation
Indices: 14969127--14969163 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
14969117 ATAAAAACTA
14969127 TAATTAAGT-TATAAT
1 TAATTAAGTATATAAT
14969142 TAATTAAGTAATATAAT
1 TAATTAAGT-ATATAAT
14969159 TAATT
1 TAATT
14969164 TGTTAGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.45
17 11 0.55
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (16 bp):
TAATTAAGTATATAAT
Found at i:14969256 original size:10 final size:10
Alignment explanation
Indices: 14969227--14969264 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
14969217 AATTATTAAC
14969227 AATTATA-AT
1 AATTATATAT
14969236 AAATATATATAT
1 -AAT-TATATAT
14969248 AATTATATAT
1 AATTATATAT
14969258 AATTATA
1 AATTATA
14969265 CCATAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 17 0.65
11 7 0.27
12 2 0.08
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
AATTATATAT
Found at i:14969659 original size:20 final size:20
Alignment explanation
Indices: 14969598--14969659 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
14969588 TAAGTACATA
14969598 ATAATAAGTT--TTAATTAT
1 ATAATAAGTTAATTAATTAT
*
14969616 A-AAT-AG-AAATATAA-TAT
1 ATAATAAGTTAAT-TAATTAT
*
14969633 TTAATAAGTTAATTAATTAT
1 ATAATAAGTTAATTAATTAT
14969653 ATAATAA
1 ATAATAA
14969660 TTTATATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 12
0.67 0.08 0.24
Matches are distributed among these distances:
16 2 0.06
17 7 0.21
18 7 0.21
19 5 0.15
20 12 0.36
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
ATAATAAGTTAATTAATTAT
Found at i:14969964 original size:20 final size:20
Alignment explanation
Indices: 14969941--14969980 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14969931 ATTATATTTA
*
14969941 TTATA-TATTATAATCATATT
1 TTATACTATTA-AATAATATT
14969961 TTATACTATTAAATAATATT
1 TTATACTATTAAATAATATT
14969981 AATTCATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATACTATTAAATAATATT
Found at i:14970309 original size:18 final size:18
Alignment explanation
Indices: 14970288--14970331 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
14970278 AATAAATATA
* *
14970288 ATATTATTATATTATTAT
1 ATATAATTAAATTATTAT
14970306 ATATAATTAAATTATTAT
1 ATATAATTAAATTATTAT
14970324 ATATAATT
1 ATATAATT
14970332 GAGTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATATAATTAAATTATTAT
Found at i:14971134 original size:31 final size:31
Alignment explanation
Indices: 14971073--14971134 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
14971063 TTTTAAACTT
**
14971073 TATTAATCTATTAAATCAATTTTATTTATTA
1 TATTAATCTATTAAATCAATTTTACATATTA
14971104 TATTAATCTA-TAAAT-AATATTATACATATTA
1 TATTAATCTATTAAATCAAT-TT-TACATATTA
14971135 CAATAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 3 0.11
30 7 0.26
31 17 0.63
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (31 bp):
TATTAATCTATTAAATCAATTTTACATATTA
Found at i:14971788 original size:7 final size:7
Alignment explanation
Indices: 14971778--14971806 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
14971768 TTTCAAATAA
14971778 ATTAATT
1 ATTAATT
14971785 ATTAATT
1 ATTAATT
14971792 ATTAATT
1 ATTAATT
14971799 ATTAATT
1 ATTAATT
14971806 A
1 A
14971807 AAATGTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTAATT
Found at i:14971871 original size:20 final size:21
Alignment explanation
Indices: 14971833--14971872 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14971823 TAACAATATT
14971833 AAAATATTGTTATTAATAATA
1 AAAATATTGTTATTAATAATA
14971854 AAAATTATT-TTATT-ATAAT
1 AAAA-TATTGTTATTAATAAT
14971873 TATATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 9 0.50
22 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (21 bp):
AAAATATTGTTATTAATAATA
Found at i:14972617 original size:29 final size:29
Alignment explanation
Indices: 14972585--14972673 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 29
14972575 ATTATATTTA
14972585 ATAATAATATAATAATTATTAAAATAATT
1 ATAATAATATAATAATTATTAAAATAATT
* *
14972614 ATAAT-TTAATAATAAATATTTATAAAT-ATT
1 ATAATAAT-ATAATAATTA-TTA-AAATAATT
*
14972644 ATATCTAAATATAATTAATTAATTAAAATA
1 ATA-AT-AATATAA-TAATT-ATTAAAATA
14972674 GATAAATTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
28 1 0.02
29 14 0.30
30 9 0.20
31 5 0.11
32 8 0.17
33 8 0.17
34 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (29 bp):
ATAATAATATAATAATTATTAAAATAATT
Found at i:14972619 original size:18 final size:19
Alignment explanation
Indices: 14972574--14972638 Score: 62
Period size: 18 Copynumber: 3.4 Consensus size: 19
14972564 ATCATAATTA
*
14972574 AATTATATTTAATAATAAT
1 AATTATAATTAATAATAAT
* *
14972593 -ATAATAATTATTAA-AAT
1 AATTATAATTAATAATAAT
14972610 AATTATAATTTAATAATAAAT
1 AATTATAA-TTAATAAT-AAT
*
14972631 ATTTATAA
1 AATTATAA
14972639 ATATTATATC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
17 3 0.08
18 17 0.47
19 6 0.17
21 10 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTATAATTAATAATAAT
Found at i:14972686 original size:19 final size:18
Alignment explanation
Indices: 14972654--14972697 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
14972644 ATATCTAAAT
*
14972654 ATAATTAATTAATTA-AA
1 ATAATAAATTAATTATAA
14972671 ATAGATAAATTAAATTATAA
1 ATA-ATAAATT-AATTATAA
14972691 ATAATAA
1 ATAATAA
14972698 TAATAGCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 3 0.13
18 6 0.26
19 9 0.39
20 5 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (18 bp):
ATAATAAATTAATTATAA
Found at i:14972754 original size:21 final size:21
Alignment explanation
Indices: 14972711--14972762 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
14972701 TAGCTTAAGA
* *
14972711 TAATATATTATATTTATTATAT
1 TAATA-ATTTTATTAATTATAT
*
14972733 TAATAATTTTATTAATTTTAT
1 TAATAATTTTATTAATTATAT
*
14972754 TTATAATTT
1 TAATAATTT
14972763 ATCCAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 21 0.81
22 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TAATAATTTTATTAATTATAT
Found at i:14972796 original size:37 final size:40
Alignment explanation
Indices: 14972731--14972811 Score: 105
Period size: 37 Copynumber: 2.1 Consensus size: 40
14972721 TATTTATTAT
* *
14972731 ATTAATAATTTTATTAATTTTATTTATAATTTATCCAATA
1 ATTAATAATTTTAATAATTTTATATATAATTTATCCAATA
* *
14972771 ATTAA-AATTTTAATAA-TTTA-ATATAATTTTTCTAATA
1 ATTAATAATTTTAATAATTTTATATATAATTTATCCAATA
14972808 ATTA
1 ATTA
14972812 TTCAATTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 18 0.49
38 4 0.11
39 10 0.27
40 5 0.14
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (40 bp):
ATTAATAATTTTAATAATTTTATATATAATTTATCCAATA
Found at i:14972899 original size:21 final size:21
Alignment explanation
Indices: 14972851--14972891 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
14972841 AAAAGTAAAT
*
14972851 AATTATTAAATAAAATTATTA
1 AATTAATAAATAAAATTATTA
* *
14972872 AAATAATAAATATAATTATT
1 AATTAATAAATAAAATTATT
14972892 GTATTAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTAATAAATAAAATTATTA
Found at i:14973231 original size:14 final size:14
Alignment explanation
Indices: 14973205--14973283 Score: 56
Period size: 14 Copynumber: 5.6 Consensus size: 14
14973195 TCTGTTATTA
14973205 AATTATAATAATAAT
1 AATTAT-ATAATAAT
14973220 AATTATATAAT-AT
1 AATTATATAATAAT
* *
14973233 ATTTTTTATAATAA-
1 A-ATTATATAATAAT
* * *
14973247 ATTTGTTTAATAAT
1 AATTATATAATAAT
14973261 ATATTAT-TAATTAAT
1 A-ATTATATAA-TAAT
14973276 AATTATAT
1 AATTATAT
14973284 GTATATAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
13 13 0.25
14 23 0.44
15 16 0.31
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (14 bp):
AATTATATAATAAT
Found at i:14973292 original size:21 final size:18
Alignment explanation
Indices: 14973253--14973293 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 18
14973243 ATAAATTTGT
14973253 TTAATAATATATTATTAA
1 TTAATAATATATTATTAA
14973271 TTAATAATTATATGTATATAA
1 TTAATAA-TATAT-TAT-TAA
14973292 TT
1 TT
14973294 TCTGTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 5 0.25
20 3 0.15
21 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTAATAATATATTATTAA
Found at i:14973645 original size:23 final size:24
Alignment explanation
Indices: 14973615--14973662 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 24
14973605 AATTATTTTA
14973615 TTACTAATAATAAGTAA-A-TTAAT
1 TTACTAATAAT-AGTAATATTTAAT
14973638 TTACTAATAATAGTAATATTTAAT
1 TTACTAATAATAGTAATATTTAAT
14973662 T
1 T
14973663 ATTGACTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.22
23 12 0.52
24 6 0.26
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (24 bp):
TTACTAATAATAGTAATATTTAAT
Found at i:14973790 original size:18 final size:18
Alignment explanation
Indices: 14973752--14973786 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14973742 AATATGGTAT
*
14973752 TTATAAAATATTAATATA
1 TTATAAAATAATAATATA
14973770 TTATAAAATAAT-ATATA
1 TTATAAAATAATAATATA
14973787 ATTACTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTATAAAATAATAATATA
Found at i:14974677 original size:23 final size:25
Alignment explanation
Indices: 14974648--14974697 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
14974638 CTCAGATAAT
*
14974648 TAATAATAAATT-A-TAAGTATTTA
1 TAATAATAAATTAATTAAATATTTA
*
14974671 TAATAATAATTTAATTAAATATTTA
1 TAATAATAAATTAATTAAATATTTA
14974696 TA
1 TA
14974698 TTTTAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 11 0.48
24 1 0.04
25 11 0.48
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (25 bp):
TAATAATAAATTAATTAAATATTTA
Found at i:14974791 original size:20 final size:19
Alignment explanation
Indices: 14974768--14974805 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14974758 ATCTAATTCA
14974768 TTTTAAATTAATAACAATTG
1 TTTTAAA-TAATAACAATTG
*
14974788 TTTTAAATATTAACAATT
1 TTTTAAATAATAACAATT
14974806 ATTTATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTTAAATAATAACAATTG
Found at i:14974984 original size:6 final size:6
Alignment explanation
Indices: 14974970--14975054 Score: 55
Period size: 6 Copynumber: 13.0 Consensus size: 6
14974960 CTGTTCAGCC
* * * *
14974970 ATTATT ATTAAT ATTAAT AATTCAAT ATTATT ATTAAA ATATAAT AATAAT
1 ATTAAT ATTAAT ATTAAT -ATT-AAT ATTAAT ATTAAT AT-TAAT ATTAAT
14975021 ATTAAAAT ATTAAT -TTAAAT AATTAAT AATTAAT
1 ATT--AAT ATTAAT ATT-AAT -ATTAAT -ATTAAT
14975055 TATTTTTAAT
Statistics
Matches: 64, Mismatches: 7, Indels: 15
0.74 0.08 0.17
Matches are distributed among these distances:
5 2 0.03
6 31 0.48
7 20 0.31
8 11 0.17
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (6 bp):
ATTAAT
Found at i:14975023 original size:19 final size:20
Alignment explanation
Indices: 14974978--14975030 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
14974968 CCATTATTAT
*
14974978 TAATATTAATAAT-TCAATAT
1 TAATATTAA-AATATCAATAA
*
14974998 TATTATTAAAATAT-AATAA
1 TAATATTAAAATATCAATAA
14975017 TAATATTAAAATAT
1 TAATATTAAAATAT
14975031 TAATTTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 20 0.69
20 9 0.31
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TAATATTAAAATATCAATAA
Found at i:14975041 original size:20 final size:21
Alignment explanation
Indices: 14975001--14975056 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
14974991 TCAATATTAT
14975001 TATTAAAATA-TAA-TAATAA
1 TATTAAAATATTAATTAATAA
*
14975020 TATTAAAATATTAATTTA-AA
1 TATTAAAATATTAATTAATAA
*
14975040 TAATTAATA-ATTAATTA
1 T-ATTAAAATATTAATTA
14975057 TTTTTAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 10 0.32
20 13 0.42
21 8 0.26
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTAAAATATTAATTAATAA
Found at i:14975045 original size:13 final size:14
Alignment explanation
Indices: 14974976--14975092 Score: 56
Period size: 14 Copynumber: 8.6 Consensus size: 14
14974966 AGCCATTATT
14974976 ATTAATATT-AATA
1 ATTAATATTAAATA
*
14974989 ATTCAATATT--ATT
1 ATT-AATATTAAATA
*
14975002 ATTAA-AATATAATA
1 ATTAATATTA-AATA
14975016 A-TAATATTAAA-A
1 ATTAATATTAAATA
14975028 TATTAAT-TTAAATA
1 -ATTAATATTAAATA
*
14975042 ATTAATAATT-AATT
1 ATTAAT-ATTAAATA
**
14975056 ATTTTTAATT-AATAA
1 ATTAAT-ATTAAAT-A
*
14975071 AATAATATTAAATA
1 ATTAATATTAAATA
14975085 A-TAATATT
1 ATTAATATT
14975093 TCATATTATT
Statistics
Matches: 81, Mismatches: 11, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
11 2 0.02
12 3 0.04
13 32 0.40
14 36 0.44
15 8 0.10
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTAATATTAAATA
Found at i:14975650 original size:180 final size:180
Alignment explanation
Indices: 14975461--14976247 Score: 523
Period size: 180 Copynumber: 4.4 Consensus size: 180
14975451 ATCATTCTAT
* * **
14975461 CATTTTGTTTAGTCATTAAGCAATTATTTCAATTCATACAAGCTTATTTTGAATAAAATAATACT
1 CATTTTGTTTAGTCATAAAACAATTATTTCAATTCATACAAGCTTATTCAGAATAAAATAATACT
14975526 AATTTATTAACATTCAAAAAATT-A-AAGCAAGAGATTTAAAAAAAAAAATCTGTTTACTGAATA
66 AATTTATTAACATTC-AAAAATTAATAAGCAAGAGATTTAAAAAAAAAAAT-TGTTTACTGAATA
* *
14975589 ATTTCAAATAGATATGACTATTTAAACAATTATCTATTTAAAATTATTTTGA
129 AGTTCAAATAGATATGACTATTTAAACAAATATCTATTTAAAATTATTTTGA
* ** * * * * * *
14975641 CATTTTGTTTTA-TCATAAAACAATTGTTTCAGCTAACAAAAACTTA-TCTGAAATAAAAAAATA
1 CATTTTG-TTTAGTCATAAAACAATTATTTCAATTCATACAAGCTTATTCAG-AATAAAATAATA
* * * ** * * *
14975704 CTACTTTATTAATATTTCAAAAATTATTAAGCAAGAGATTTAAAAACTAAAGTTGTTT-TTCAA-
64 CTAATTTATTAACA-TTCAAAAATTAATAAGCAAGAGATTTAAAAAAAAAAATTGTTTACTGAAT
* * * * * * *
14975767 AGCAATTCTAATAGTTATGACTATTTGAACAAATAT-TAATCTCAAA-TAGTTATGA
128 A--AGTTCAAATAGATATGACTATTTAAACAAATATCT-ATTTAAAATTA-TTTTGA
* * ** * *
14975822 TCATTAT-TTT-GTCAGAAAACAATTATTTTTA-TCATATAAGCTTATTTAG-ATAAACATAATA
1 -CATTTTGTTTAGTCATAAAACAATTATTTCAATTCATACAAGCTTATTCAGAATAAA-ATAATA
* * * * *
14975883 CTAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTT-AAAAAATAAATGTGTTTA-TCG-
64 CTAATTTATTAACA-TTCAAAAATTAATAAGCAAGAGATTTAAAAAAAAAAAT-TGTTTACT-GA
* * * * * *
14975945 ATAAGTTCAAATA-ATTAAGATTA-TTAGAATAAATATCAATTTCAAATTGTTCTT-A
126 ATAAGTTCAAATAGA-TATGACTATTTA-AACAAATATCTATTTAAAATTATT-TTGA
* * * * * * * * *
14976000 CCTTTTGTTTAATTATAAAATAATTGTTTCAGTTCATACAAGCTTATTCAAAAGAGAATAATACT
1 CATTTTGTTTAGTCATAAAACAATTATTTCAATTCATACAAGCTTATTCAGAATAAAATAATACT
* * * * * * ** * *
14976065 AATTTATTAACTTTTGAAAGATTAATAAGTAGGATATTTGAAAAACTAAATTTGTTTACTGAACA
66 AATTTATTAAC-ATTCAAAAATTAATAAGCAAGAGATTT-AAAAAAAAAAATTGTTTACTGAATA
* * * ** *
14976130 AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCGTTGTGA
129 AGTTCAAATAGATATGACTATTTAAACAAATATCTATTTAAAATTATTTTGA
* * * * * * * * * *
14976182 -ATTTTTCTTTTGTCATAAAACAATTGTTTTAGTTCACAAAAGTTTATCCAAAATAAAATAATAC
1 CA-TTTTGTTTAGTCATAAAACAATTATTTCAATTCATACAAGCTTATTCAGAATAAAATAATAC
14976246 TA
65 TA
14976248 CTTTTCTTAA
Statistics
Matches: 461, Mismatches: 111, Indels: 68
0.72 0.17 0.11
Matches are distributed among these distances:
177 6 0.01
178 47 0.10
179 76 0.16
180 143 0.31
181 62 0.13
182 125 0.27
183 2 0.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.39
Consensus pattern (180 bp):
CATTTTGTTTAGTCATAAAACAATTATTTCAATTCATACAAGCTTATTCAGAATAAAATAATACT
AATTTATTAACATTCAAAAATTAATAAGCAAGAGATTTAAAAAAAAAAATTGTTTACTGAATAAG
TTCAAATAGATATGACTATTTAAACAAATATCTATTTAAAATTATTTTGA
Found at i:14976008 original size:359 final size:360
Alignment explanation
Indices: 14975494--14976158 Score: 780
Period size: 359 Copynumber: 1.9 Consensus size: 360
14975484 TTATTTCAAT
* *
14975494 TCATACAAGCTTATTTTGAATAAAATAATACTAATTTATTAACATTCAAAAAATTAAAGCAAGAG
1 TCATACAAGCTTATTTAGAATAAAATAATACTAATTTAATAACATTCAAAAAATTAAAGCAAGAG
* * * *
14975559 ATTTAAAAAAAAAAATCTGTTTACTGAATAATTTCAAATAGATATGACTATTTAAACAATTATCT
66 ATTTAAAAAAAAAAATCTGTTTACTGAATAAGTTCAAATAGATAAGACTATTTAAACAAATATCA
*
14975624 ATTTAAAATTATTTTGACATTTTGTTTTATCATAAAACAATTGTTTCAGCTAACAAAAACTTATC
131 ATTTAAAATTATTTTGACATTTTGTTTAATCATAAAACAATTGTTTCAGCTAACAAAAACTTAT-
* * *
14975689 TGAAATA-A-AAAAATACTACTTTATTAA-TATTTCAAAAATTATTAAGCAAGAGATTT-AAAAA
195 TCAAA-AGAGAAAAATACTAATTTATTAACT-TTTCAAAAATTAATAAGCAAGAGATTTGAAAAA
* *
14975750 CTAAAGTTGTTT-TTCAAAGCAA-TTCTAATAGTTATGACTATTTGAACAAATATTAATCTCAAA
258 CTAAAGTTGTTTACT-AAA-CAAGTTCAAATAGTTATGACTATTTGAACAAATATTAATCTCAAA
14975813 TAGTTATGATCATTATTTTGTCAGAAAACAATTATTTTTA
321 TAGTTATGATCATTATTTTGTCAGAAAACAATTATTTTTA
* * ** *
14975853 TCATATAAGCTTATTTAG-ATAAACATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAA
1 TCATACAAGCTTATTTAGAATAAA-ATAATACTAATTTAATAACATTCAAAAAATT-A-AAGCAA
* * * *
14975917 GAGATTT-AAAAAATAAATGTGTTTA-TCG-ATAAGTTCAAATA-ATTAAGATTA-TTAGAATAA
63 GAGATTTAAAAAAAAAAATCTGTTTACT-GAATAAGTTCAAATAGA-TAAGACTATTTA-AACAA
* * * * * * * * *
14975977 ATATCAATTTCAAATTGTTCTT-ACCTTTTGTTTAATTATAAAATAATTGTTTCAGTTCATACAA
125 ATATCAATTTAAAATTATT-TTGACATTTTGTTTAATCATAAAACAATTGTTTCAGCTAACAAAA
* * * * * * *
14976041 GCTTATTCAAAAGAGAATAATACTAATTTATTAACTTTTGAAAGATTAATAAGTAGGATATTTGA
189 ACTTATTCAAAAGAGAAAAATACTAATTTATTAACTTTTCAAAAATTAATAAGCAAGAGATTTGA
* *
14976106 AAAACTAAATTTGTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAACAA
254 AAAACTAAAGTTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAA
14976159 TTATCTATTT
Statistics
Matches: 254, Mismatches: 39, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
357 1 0.00
358 14 0.06
359 161 0.63
360 65 0.26
361 13 0.05
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (360 bp):
TCATACAAGCTTATTTAGAATAAAATAATACTAATTTAATAACATTCAAAAAATTAAAGCAAGAG
ATTTAAAAAAAAAAATCTGTTTACTGAATAAGTTCAAATAGATAAGACTATTTAAACAAATATCA
ATTTAAAATTATTTTGACATTTTGTTTAATCATAAAACAATTGTTTCAGCTAACAAAAACTTATT
CAAAAGAGAAAAATACTAATTTATTAACTTTTCAAAAATTAATAAGCAAGAGATTTGAAAAACTA
AAGTTGTTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAAATATTAATCTCAAATAGTT
ATGATCATTATTTTGTCAGAAAACAATTATTTTTA
Found at i:14976244 original size:182 final size:182
Alignment explanation
Indices: 14975512--14976272 Score: 607
Period size: 182 Copynumber: 4.2 Consensus size: 182
14975502 GCTTATTTTG
* * *
14975512 AATAAAATAATACTAATTTATTAACATTCAAAAAATT-A-AAGCAAGAGATTTAAAAAAAAAAAT
1 AATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGCAAGAGATTT-AAAAAATAAAT
* * * * * * * *
14975575 CTGTTTACT-GAATAATTTCAAATAGATATGACTATTTAAACAATTATCTATTTAAAATTATTTT
65 TTGTTTACTCGAACAAGTTCAAATAGTTATGACTATTTGAACAAATATCTATTTAAAATTGTTAT
* * * **
14975639 GACA-TTTTGTTTTATCATAAAACAATTGTTTCAGCTAACAAAAACTTATCTGA
130 GA-ATTTTTGTTTTATCATAAAACAATTGTTTCAGTTCACAAAAGCTTATCCAA
* * * * * *
14975692 AATAAAAAAATACTACTTTATTAATATTTCAAAAATTATTAAGCAAGAGATTTAAAAACTAAAGT
1 AATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGCAAGAGATTTAAAAAATAAATT
* * * * * *
14975757 TGTTT-TTCAAAGCAA-TTCTAATAGTTATGACTATTTGAACAAATAT-TAATCTCAAATAGTTA
66 TGTTTACTCGAA-CAAGTTCAAATAGTTATGACTATTTGAACAAATATCT-ATTTAAAATTGTTA
** * * * * * * * **
14975819 TG-ATCATTATTTTGTCAGAAAACAATTATTT--TTATCATATAAGCTTAT-TTA
129 TGAATTTTTGTTTTATCATAAAACAATTGTTTCAGT-TCACAAAAGCTTATCCAA
* * * *
14975870 GATAAACATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
1 AATAAA-ATAATACTAATTTATTAATATTTAAAAAATTAATAAGCAAGAGATTTAAAAAATAAAT
* * * * * * * * * *
14975935 GTGTTTA-TCG-ATAAGTTCAAATAATTAAGATTATTAGAATAAATATCAATTTCAAATTGTTCT
65 TTGTTTACTCGAACAAGTTCAAATAGTTATGACTATTTGAACAAATATCTATTTAAAATTGTTAT
* ** * * * * * *
14975998 TACCTTTTGTTTAATTATAAAATAATTGTTTCAGTTCATACAAGCTTATTCAA
130 GAATTTTTGTTTTATCATAAAACAATTGTTTCAGTTCACAAAAGCTTATCCAA
* * * * * * * *
14976051 AAGAGAATAATACTAATTTATTAACT-TTTGAAAGATTAATAAGTAGGATATTTGAAAAACTAAA
1 AATAAAATAATACTAATTTATTAA-TATTTAAAAAATTAATAAGCAAGAGATTT-AAAAAATAAA
* * *
14976115 TTTGTTTACT-GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCGTTG
64 TTTGTTTACTCGAACAAGTTCAAATAGTTATGACTATTTGAACAAATATCTATTTAAAATTGTTA
* * * *
14976179 TGAATTTTTCTTTTGTCATAAAACAATTGTTTTAGTTCACAAAAGTTTATCCAA
129 TGAATTTTTGTTTTATCATAAAACAATTGTTTCAGTTCACAAAAGCTTATCCAA
* * **
14976233 AATAAAATAATACTACTTTTCTTAATATTTTGAAAATTAA
1 AATAAAATAATACTA-ATTTATTAATATTTAAAAAATTAA
14976273 GAGATTCAAA
Statistics
Matches: 446, Mismatches: 114, Indels: 39
0.74 0.19 0.07
Matches are distributed among these distances:
177 2 0.00
178 45 0.10
179 86 0.19
180 108 0.24
181 76 0.17
182 112 0.25
183 17 0.04
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (182 bp):
AATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGCAAGAGATTTAAAAAATAAATT
TGTTTACTCGAACAAGTTCAAATAGTTATGACTATTTGAACAAATATCTATTTAAAATTGTTATG
AATTTTTGTTTTATCATAAAACAATTGTTTCAGTTCACAAAAGCTTATCCAA
Found at i:14976628 original size:24 final size:22
Alignment explanation
Indices: 14976596--14976641 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
14976586 TCAAATTGTT
14976596 ATAATA-TTTTGTTTTGTCATAAA
1 ATAATATTTTTG-TTTGT-ATAAA
14976619 ATAATTATTTTTGTTTGTATAAA
1 ATAA-TATTTTTGTTTGTATAAA
14976642 TTTATTCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 9 0.43
24 7 0.33
25 5 0.24
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (22 bp):
ATAATATTTTTGTTTGTATAAA
Found at i:14976790 original size:181 final size:182
Alignment explanation
Indices: 14976552--14976985 Score: 518
Period size: 181 Copynumber: 2.4 Consensus size: 182
14976542 CGAATAAGTG
* * **
14976552 CAAAGAATTAT-GACTATTTGAACAATTATCTATTTCAAATTGTTATAATATTTTGTTTTGTCAT
1 CAAATAATTATAGACTATTTGAATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCAT
** * * * * *
14976616 AAAATAATTATTTTTGTTTGTATAAATTTATTCAAAATAAAATAATACTAAATTAATAATA-TTC
66 AAAATAATTATTTCAGCTTATACAAACTTATTCAAAATAAAATAAAACTAAATTAATAATATTTC
* * * *
14976680 TAGAAATTTATAACTAAGAGATTTAAAAAATAAATTTGTTTGTTGAACCAGTT
131 -AAAAATTTATAACTAAGAGATTTAAAAAATAAATTTCTTTATTAAACCAGTT
* * * * * *
14976733 TAAATAGTTA-AGACTATATGAATAATTATCTATTTTAAATTGTTATGACCTTTTGTTTTGTTAT
1 CAAATAATTATAGACTATTTGAATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCAT
* * * * *
14976797 AAAACAATTATTTCAGCTTATACAAGCTTATTCATAATAAAATAAAACTAATTTATTAATATTTC
66 AAAATAATTATTTCAGCTTATACAAACTTATTCAAAATAAAATAAAACTAAATTAATAATATTTC
* * * *
14976862 AAAAATTTATAAGTAATAGATTTAAAAAATAATTTTCTTTATTAAATCAGTT
131 AAAAATTTATAACTAAGAGATTTAAAAAATAAATTTCTTTATTAAACCAGTT
* * *
14976914 CAAATAATTATAG-CTATTTGAATAATTATAC-ATTTCAATTTGTTATAACCTTTTATGTTGTCA
1 CAAATAATTATAGACTATTTGAATAATTAT-CTATTTCAAATTGTTATAACCTTTTGTTTTGTCA
14976977 TAAAATAAT
65 TAAAATAAT
14976986 ACTAATCAAA
Statistics
Matches: 209, Mismatches: 40, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
181 203 0.97
182 6 0.03
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (182 bp):
CAAATAATTATAGACTATTTGAATAATTATCTATTTCAAATTGTTATAACCTTTTGTTTTGTCAT
AAAATAATTATTTCAGCTTATACAAACTTATTCAAAATAAAATAAAACTAAATTAATAATATTTC
AAAAATTTATAACTAAGAGATTTAAAAAATAAATTTCTTTATTAAACCAGTT
Found at i:14977241 original size:324 final size:324
Alignment explanation
Indices: 14976652--14977248 Score: 796
Period size: 324 Copynumber: 1.8 Consensus size: 324
14976642 TTTATTCAAA
* *
14976652 ATAAAATAATACTAAATTAATAATATTCTAGAAATTTATAACTAAGAGATTTAAAAAATAAATTT
1 ATAAAATAATACTAAATAAATAATATTCTAGAAATTAATAACTAAGAGATTTAAAAAATAAATTT
*** * * * * **
14976717 GTTTGTTGAACCAGTTTAAATAGTTAAGACTATATGAATAATTATCTATTTTAAATTGTTATGAC
66 GTTTGCCAAACCACTTCAAATAGTTAAGACTATATAAATAATTATCTATTTGAAATACTTATGAC
* * * *
14976782 CTTTTGTTTTGTTATAAAACAATTATTTCAGCTTATACAAGCTTATTCATAATAAAATAAAACTA
131 ATTTTATTTTATTATAAAACAATTATTTCAGCTTATACAAGCTTATTCAGAATAAAATAAAACTA
* * * * **
14976847 ATTTATTAATATTTCAAAAATTTATAAGTAATAGATTTAAAAAATAATTTTCTTTATTAAATCAG
196 ATGTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAATTTTCGTTAAAAAATCAG
14976912 TTCAAATAATTATAGCTATTTGAATAATTATACATTTCAATTTGTTATAACCTTTTATGTTGTC
261 TTCAAATAATTATAGCTATTTGAATAATTATACATTTCAATTTGTTATAACCTTTTATGTTGTC
*
14976976 ATAAAATAATACT-AATCAAATAATATT-TTGACAATTAATAACTAAGAGATTTAAAAAATAAAT
1 ATAAAATAATACTAAAT-AAATAATATTCTAGA-AATTAATAACTAAGAGATTTAAAAAATAAAT
* *
14977039 TTGTTTGCCAAACCACTTCAAATGGTTAAGGCTATATAAATAATTATCTATTTGAAATACTTATG
64 TTGTTTGCCAAACCACTTCAAATAGTTAAGACTATATAAATAATTATCTATTTGAAATACTTATG
* * * * *
14977104 ACATTTTATTTTATTGTAAAGCAATTTTTTTAGCTCT-TACTAA-CTTATTCGGAATAAAAT-AA
129 ACATTTTATTTTATTATAAAACAATTATTTCAGCT-TATAC-AAGCTTATTCAGAATAAAATAAA
*
14977166 ATTGAATGTATTAATATTTCAAAAATTAATAAGTAAGAGA-TTAAAAATATAATTTT-GTTAGCA
192 ACT-AATGTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA-ATAATTTTCGTTA--A
14977229 AAAAT-AGTTCAAATAATTAT
253 AAAATCAGTTCAAATAATTAT
14977249 GAATACTTGA
Statistics
Matches: 235, Mismatches: 30, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
323 20 0.09
324 208 0.89
325 7 0.03
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (324 bp):
ATAAAATAATACTAAATAAATAATATTCTAGAAATTAATAACTAAGAGATTTAAAAAATAAATTT
GTTTGCCAAACCACTTCAAATAGTTAAGACTATATAAATAATTATCTATTTGAAATACTTATGAC
ATTTTATTTTATTATAAAACAATTATTTCAGCTTATACAAGCTTATTCAGAATAAAATAAAACTA
ATGTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAATTTTCGTTAAAAAATCAG
TTCAAATAATTATAGCTATTTGAATAATTATACATTTCAATTTGTTATAACCTTTTATGTTGTC
Found at i:14978246 original size:180 final size:181
Alignment explanation
Indices: 14977956--14979027 Score: 1059
Period size: 181 Copynumber: 6.0 Consensus size: 181
14977946 TTATTCGGAT
* * *
14977956 TAAAATAATATTAATTTATTAATATT-TCAATAATTAATAAGTAAAAGATTTAAAAAATAAATAT
1 TAAAATAATATTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCT
* * * * * * * * * *
14978020 GTTTAACAAATAAATTCAAATAGTAATAACTATTTGAATAATTATCTATTTCAAATTGTTTTCAT
65 GTTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGA-
* * * * * * *
14978085 C-TTTTGTTTCGTCATAAAA-AATTGTATCAATTTATATAGGCTTATTTGAAA
129 CATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAA
* * * * *
14978136 TAAAACAATACTAACTTATTAATATTCAAAAAATTAATGAGTAAGAGATTTAAAAAATAAATCTG
1 TAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTG
* * * *
14978201 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATTAAGACC
66 TTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGACA
* * **
14978266 TTTTATTTTGTCATAAAATAATTGTTTAC-ATTCATACAAGCTTATTTCGAA
131 TTTTGTTTTGTCATAAAACAATTGTTT-CTATTCATACAAGCTTATTTAAAA
* * ** * * *
14978317 TAAAATAATATAAATTTACTAATATTCTAAGGATTAATAAGTAA-AAATTTAAAAACTAAATCTA
1 TAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTG
** *
14978381 TTT-TTGAAGCACGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGAC
66 TTTACCGAA-CAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGAC
* * *
14978445 A-TTT-TTTTGTCATACACCAATTGTTTCTATTCATA-AAGGCTTATTCAAAA
130 ATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAA-GCTTATTTAAAA
* * *
14978495 TAAAATAATATTAATTTATTAATATTCAAAAAATTAATAACTTAA-AGATTTAAAAAATAAATTT
1 TAAAATAATATTAATTTATTAATATTCTAAAAATTAATAA-GTAAGAGATTTAAAAAATAAATCT
* * * * * *
14978559 GTTTATCGACCGAA-TTCAAATAGTTATGACTACTTAAATAATTATTTTATTTCAAATTGTTGTG
65 GTTTACCGAAC-AAGTTCAAATAGTTATGACTATTTAAATAATTA-TCTATTTCAAATTATTATG
* * * * * *
14978623 ACAATTTGATTT-TCATAAAACAATAGTTTCTATTCATACAAGTTTACTCAAAA
128 ACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAA
* * ** * *
14978676 TAAGATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTGGAGATTTAAATAATAAATATG
1 TAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTG
* * * * * *
14978741 TTTACCGAACAAATTCAAATAGTCATGTCCATTTAAACT-ATTATCTATTTCAAATCATTAGGAC
66 TTTACCGAACAAGTTCAAATAGTTATGACTATTTAAA-TAATTATCTATTTCAAATTATTATGAC
* * * ** * *
14978805 ATTTTGTTTTGTCATAAAACAACTGTTTCTATACGTACAAAATTATTCAGAA
130 ATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAA
* * * *
14978857 CAAAATAATATTATTTTATTAATATTTTAAAAATTAATAAG--A-A-ATTTAAAAACTAAATCTG
1 TAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTG
* * * * **
14978918 TTTACC-ATACCAGTTCAAATAGTTATGACTATATGAATAGTTATCTATTTCAAATTGGTATG--
66 TTTACCGA-ACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGAC
* * * *
14978980 ATCTTTGTTTTATCATAAAATAATTGTTTCTATTCATATAAACTTATT
130 AT-TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATT
14979028 CGAAGCAAAA
Statistics
Matches: 739, Mismatches: 132, Indels: 46
0.81 0.14 0.05
Matches are distributed among these distances:
175 2 0.00
176 40 0.05
177 64 0.09
178 71 0.10
179 59 0.08
180 245 0.33
181 251 0.34
182 7 0.01
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.40
Consensus pattern (181 bp):
TAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTG
TTTACCGAACAAGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGACA
TTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTAAAA
Found at i:14978424 original size:18 final size:19
Alignment explanation
Indices: 14978394--14978448 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 19
14978384 TTGAAGCACG
*
14978394 TTCAAATAGTTATGACTAT
1 TTCAAATAATTATGACTAT
14978413 TT-AAATAATTAT--CTAT
1 TTCAAATAATTATGACTAT
*
14978429 TTCAAATTATTATGAC-AT
1 TTCAAATAATTATGACTAT
14978447 TT
1 TT
14978449 TTTTGTCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
16 6 0.19
17 9 0.29
18 13 0.42
19 3 0.10
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.47
Consensus pattern (19 bp):
TTCAAATAATTATGACTAT
Found at i:14978430 original size:16 final size:17
Alignment explanation
Indices: 14978394--14978441 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
14978384 TTGAAGCACG
*
14978394 TTCAAATAGTTATGACTAT
1 TTCAAATAATTAT--CTAT
14978413 TT-AAATAATTATCTAT
1 TTCAAATAATTATCTAT
*
14978429 TTCAAATTATTAT
1 TTCAAATAATTAT
14978442 GACATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 6 0.23
17 9 0.35
18 9 0.35
19 2 0.08
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (17 bp):
TTCAAATAATTATCTAT
Found at i:14978817 original size:540 final size:536
Alignment explanation
Indices: 14977935--14979017 Score: 1300
Period size: 540 Copynumber: 2.0 Consensus size: 536
14977925 TGACCTTTTG
* ** * * *
14977935 TTCATAAATGCTTATTCGGATTAAAATAATATTAATTTATTAATATTTCAATAATTAATAAGTAA
1 TTCATAAAGGCTTATTCAAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAACTAA
* * *
14978000 AAGATTTAAAAAATAAATATGTTTAACAAATAAATTCAAATAGTAATAACTATTTGAATAATTAT
66 AAGATTTAAAAAATAAATATGTTTAACAAACAAATTCAAATAGTAATAACTACTTAAATAATTAT
* * * * * * *
14978065 CTATTTCAAATTGTTTTCATCTTTTGTTTCGTCATAAAAAATTGTATCAATTTATATAGGCTTAT
131 CTATTTCAAATTGTTGTCATCATTTGTTTC-TCATAAAAAATAGTATCAATTCATACAAGCTTAC
** *
14978130 TTGAAATAAAACAATACTAACTTATTAATATTCAAAAAATTAATGAGTAAGAGATTTAAAAAATA
195 TCAAAATAAAACAATACTAACTTATTAATATTCAAAAAATTAATAAGTAAGAGATTTAAAAAATA
* * * * * *
14978195 AATCTGTTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTATT
260 AATATGTTTACCGAACAAATTCAAATAGTCATGACCATTTAAACAATTATCTATTTCAAATCATT
* * * * ** *
14978260 AAGACCTTTTATTTTGTCATAAAATAATTGTTTAC-ATTCATACAAGCTTATTTC-GAATAAAAT
325 AAGACATTTTATTTTGTCATAAAACAACTGTTT-CTATACATACAAAATTA-TTCAGAACAAAAT
** ***
14978323 AATATAAATTTACTAATATTCTAAGGATTAATAAGTAAAAATTTAAAAACTAAATCTATTTTTGA
388 AATATAAATTTACTAATATTCTAAAAATTAATAAG---AAATTTAAAAACTAAATCTATTTACCA
* * *
14978388 -AGCACGTTCAAATAGTTATGACTATTTAAATAATTATCTATTTCAAATTATTATGA-CATTT-T
450 TACCA-GTTCAAATAGTTATGACTATATAAATAATTATCTATTTCAAATTAGTATGATC-TTTGT
* * *
14978450 TTTGTCATACACCAATTGTTTCTA
513 TTTATCATAAAACAATTGTTTCTA
*
14978474 TTCATAAAGGCTTATTCAAAATAAAATAATATTAATTTATTAATA-TTCAAAAAATTAATAACTT
1 TTCATAAAGGCTTATTCAAAATAAAATAATATTAATTTATTAATATTTC-AAAAATTAATAACTA
* * * * * * *
14978538 AAAGATTTAAAAAATAAATTTGTTTATCGACCGAATTCAAATAGTTATGACTACTTAAATAATTA
65 AAAGATTTAAAAAATAAATATGTTTAACAAACAAATTCAAATAGTAATAACTACTTAAATAATTA
* * * * *
14978603 TTTTATTTCAAATTGTTGTGA-CAATTTGATTT-TCATAAAACAATAGTTTCTATTCATACAAGT
130 -TCTATTTCAAATTGTTGTCATC-ATTTG-TTTCTCATAAAA-AATAGTATCAATTCATACAAGC
* * * * ** *
14978666 TTACTCAAAATAAGATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTGGAGATTTAAAT
191 TTACTCAAAATAAAACAATACTAACTTATTAATATTCAAAAAATTAATAAGTAAGAGATTTAAAA
* *
14978731 AATAAATATGTTTACCGAACAAATTCAAATAGTCATGTCCATTTAAACTATTATCTATTTCAAAT
256 AATAAATATGTTTACCGAACAAATTCAAATAGTCATGACCATTTAAACAATTATCTATTTCAAAT
* * *
14978796 CATTAGGACATTTTGTTTTGTCATAAAACAACTGTTTCTATACGTACAAAATTATTCAGAACAAA
321 CATTAAGACATTTTATTTTGTCATAAAACAACTGTTTCTATACATACAAAATTATTCAGAACAAA
* * * * *
14978861 ATAATATTATTTTATTAATATTTTAAAAATTAATAAGAAATTTAAAAACTAAATCTGTTTACCAT
386 ATAATATAAATTTACTAATATTCTAAAAATTAATAAGAAATTTAAAAACTAAATCTATTTACCAT
* * *
14978926 ACCAGTTCAAATAGTTATGACTATATGAATAGTTATCTATTTCAAATTGGTATGATCTTTGTTTT
451 ACCAGTTCAAATAGTTATGACTATATAAATAATTATCTATTTCAAATTAGTATGATCTTTGTTTT
*
14978991 ATCATAAAATAATTGTTTCTA
516 ATCATAAAACAATTGTTTCTA
14979012 TTCATA
1 TTCATA
14979018 TAAACTTATT
Statistics
Matches: 457, Mismatches: 77, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
537 72 0.16
538 34 0.07
539 121 0.26
540 227 0.50
541 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (536 bp):
TTCATAAAGGCTTATTCAAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAACTAA
AAGATTTAAAAAATAAATATGTTTAACAAACAAATTCAAATAGTAATAACTACTTAAATAATTAT
CTATTTCAAATTGTTGTCATCATTTGTTTCTCATAAAAAATAGTATCAATTCATACAAGCTTACT
CAAAATAAAACAATACTAACTTATTAATATTCAAAAAATTAATAAGTAAGAGATTTAAAAAATAA
ATATGTTTACCGAACAAATTCAAATAGTCATGACCATTTAAACAATTATCTATTTCAAATCATTA
AGACATTTTATTTTGTCATAAAACAACTGTTTCTATACATACAAAATTATTCAGAACAAAATAAT
ATAAATTTACTAATATTCTAAAAATTAATAAGAAATTTAAAAACTAAATCTATTTACCATACCAG
TTCAAATAGTTATGACTATATAAATAATTATCTATTTCAAATTAGTATGATCTTTGTTTTATCAT
AAAACAATTGTTTCTA
Found at i:14979147 original size:14 final size:14
Alignment explanation
Indices: 14979106--14979139 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14979096 TTGAGTTTAA
*
14979106 TAATTATTA-CTAT
1 TAATTATAATCTAT
14979119 TAATTATAATCTAT
1 TAATTATAATCTAT
14979133 TAATTAT
1 TAATTAT
14979140 CAATTATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATTATAATCTAT
Found at i:14979274 original size:13 final size:13
Alignment explanation
Indices: 14979232--14979348 Score: 57
Period size: 13 Copynumber: 8.8 Consensus size: 13
14979222 TAATATTATG
14979232 ATTA-TATT-ATA
1 ATTATTATTAATA
14979243 ATTCATT-TTAATAA
1 ATT-ATTATTAAT-A
*
14979257 TATTATTATTTATA
1 -ATTATTATTAATA
14979271 ATTATTATTAATA
1 ATTATTATTAATA
* *
14979284 AATAATATTAATATA
1 ATTATTATT-A-ATA
* *
14979299 AATGTTATTAATATA
1 ATTATTATT-A-ATA
*
14979314 ACTTA-AATTAATA
1 A-TTATTATTAATA
14979327 A--ATTATATAATA
1 ATTATTAT-TAATA
14979339 ATTATTATTA
1 ATTATTATTA
14979349 TATTAAAATA
Statistics
Matches: 83, Mismatches: 10, Indels: 24
0.71 0.09 0.21
Matches are distributed among these distances:
10 1 0.01
11 5 0.06
12 9 0.11
13 28 0.34
14 12 0.14
15 27 0.33
16 1 0.01
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.50
Consensus pattern (13 bp):
ATTATTATTAATA
Found at i:14979276 original size:16 final size:16
Alignment explanation
Indices: 14979219--14979280 Score: 51
Period size: 16 Copynumber: 3.9 Consensus size: 16
14979209 TATAATCAAA
*
14979219 TTATAA-TATTATGA-
1 TTATAATTATTATTAT
*
14979233 TTAT-ATTATAATTCAT
1 TTATAATTATTATT-AT
14979249 TT-TAATAATATTATTAT
1 TTATAAT--TATTATTAT
14979266 TTATAATTATTATTA
1 TTATAATTATTATTA
14979281 ATAAATAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
16 12 0.32
17 4 0.11
18 10 0.26
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
TTATAATTATTATTAT
Found at i:14979301 original size:15 final size:15
Alignment explanation
Indices: 14979252--14979314 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
14979242 AATTCATTTT
* *
14979252 AATAATATTATTATT
1 AATAATATTAATATA
* *
14979267 TATAATTATTATTAATA
1 AATAA-TATTAAT-ATA
14979284 AATAATATTAATATA
1 AATAATATTAATATA
**
14979299 AATGTTATTAATATA
1 AATAATATTAATATA
14979314 A
1 A
14979315 CTTAAATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
15 21 0.52
16 13 0.32
17 6 0.15
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
AATAATATTAATATA
Found at i:14980087 original size:25 final size:26
Alignment explanation
Indices: 14980044--14980113 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 26
14980034 AAAAAATCAC
*
14980044 TAATATATTATAATTTAAATTTAT-AT
1 TAATA-ATTATAATATAAATTTATAAT
14980070 TAATAATTATAATATAAA-TTATAAT
1 TAATAATTATAATATAAATTTATAAT
*
14980095 TACA-AATTATCA-ATAAATT
1 TA-ATAATTATAATATAAATT
14980114 AAATTACATT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
24 9 0.23
25 24 0.62
26 6 0.15
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (26 bp):
TAATAATTATAATATAAATTTATAAT
Found at i:14980089 original size:12 final size:12
Alignment explanation
Indices: 14980050--14980114 Score: 53
Period size: 13 Copynumber: 5.3 Consensus size: 12
14980040 TCACTAATAT
*
14980050 ATTATAATTTAA
1 ATTATAATATAA
*
14980062 ATTTATATTA-ATA
1 A-TTATAATATA-A
14980075 ATTATAATATAA
1 ATTATAATATAA
*
14980087 ATTATAATTACAA
1 ATTATAA-TATAA
*
14980100 ATTATCA-ATAA
1 ATTATAATATAA
14980111 ATTA
1 ATTA
14980115 AATTACATTT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
11 7 0.16
12 17 0.40
13 19 0.44
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (12 bp):
ATTATAATATAA
Found at i:14980507 original size:22 final size:21
Alignment explanation
Indices: 14980443--14980510 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
14980433 CATTATAAAC
* * *
14980443 AATATTAATAATTATTTA-AT
1 AATATAAATAATTAATAATAT
*
14980463 AATATAAATAAATTAATATTAT
1 AATATAAAT-AATTAATAATAT
14980485 AATATACAAT-ATTATATAATAT
1 AATATA-AATAATTA-ATAATAT
14980507 AATA
1 AATA
14980511 ATTATCATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 8 0.21
21 10 0.26
22 18 0.46
23 3 0.08
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (21 bp):
AATATAAATAATTAATAATAT
Found at i:14980510 original size:15 final size:15
Alignment explanation
Indices: 14980476--14980556 Score: 53
Period size: 15 Copynumber: 5.3 Consensus size: 15
14980466 ATAAATAAAT
14980476 TAATATTATA-ATATA
1 TAATATTATATA-ATA
*
14980491 CAATATTATATAATA
1 TAATATTATATAATA
14980506 TAATAATTATCATAAT-
1 TAAT-ATTAT-ATAATA
*
14980522 TATTATTAATTATAATA
1 TAATATT-A-TATAATA
* *
14980539 TTA-ATTATA-AATT
1 TAATATTATATAATA
14980552 TAATA
1 TAATA
14980557 AGTTAAATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
13 5 0.10
14 3 0.06
15 19 0.37
16 18 0.35
17 7 0.13
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATATTATATAATA
Found at i:14980545 original size:19 final size:18
Alignment explanation
Indices: 14980509--14980556 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
14980499 TATAATATAA
*
14980509 TAATTATCATAATTATTAT
1 TAATTATAAT-ATTATTAT
14980528 TAATTATAATATTAATTAT
1 TAATTATAATATT-ATTAT
*
14980547 AAATT-TAATA
1 TAATTATAATA
14980557 AGTTAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 8 0.31
19 18 0.69
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTATAATATTATTAT
Found at i:14980879 original size:7 final size:7
Alignment explanation
Indices: 14980867--14980908 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
14980857 ATTGTAAATT
14980867 TTTTTTA
1 TTTTTTA
14980874 TTTTTTA
1 TTTTTTA
*
14980881 TTTTATA
1 TTTTTTA
*
14980888 -TTTATA
1 TTTTTTA
14980894 TTTTTTA
1 TTTTTTA
*
14980901 ATTTTTA
1 TTTTTTA
14980908 T
1 T
14980909 CTTATGATCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 6 0.20
7 24 0.80
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTTA
Found at i:14983580 original size:58 final size:59
Alignment explanation
Indices: 14983491--14983788 Score: 259
Period size: 58 Copynumber: 5.0 Consensus size: 59
14983481 ATTTTTTGCA
*
14983491 AAAAATAAAATTTTTCAAAAAGAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
1 AAAAAT-AAAGTTTTC-AAAA-AAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
** *
14983553 GCAATTAAAGTTTTC-AAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAA-TTTTCTTT
1 AAAAATAAAGTTTTCAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTC-TT
* ** * *
14983611 AAAAATAAA-TTTTCAAAAAAAAAGGTTTTTTTTGGAAAAAAAGTTGAAAGTATTAATTTTCCTT
1 AAAAATAAAGTTTTC--AAAAAAA---TATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTTCTT
*** * * *
14983675 AAAAAT-AAGTTTTCAAAAATGGATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTG
1 AAAAATAAAGTTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
* ** * *
14983733 GAATTTAAAG-TTTCAAAAAAATATTTTTG-GAAAAAAATTGAAAGTATCAATTTTTC
1 AAAAATAAAGTTTTCAAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTTC
14983789 CTGTACAAAA
Statistics
Matches: 191, Mismatches: 31, Indels: 32
0.75 0.12 0.13
Matches are distributed among these distances:
57 13 0.07
58 102 0.53
59 11 0.06
60 6 0.03
61 8 0.04
62 8 0.04
63 8 0.04
64 31 0.16
65 4 0.02
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (59 bp):
AAAAATAAAGTTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
Found at i:14983669 original size:122 final size:116
Alignment explanation
Indices: 14983503--14983788 Score: 310
Period size: 122 Copynumber: 2.4 Consensus size: 116
14983493 AAATAAAATT
** ** *
14983503 TTTCAAAAAGAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTTCTTGCAATTAAAGTTTT
1 TTTC-AAAA-AAATATTTTTGGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAGTTTT
* * * *
14983567 CAAAAAAT-ATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAT
63 C-AAAAATGATTTTTGAGG-AAAAGTTGAAAATATCAATTTTCCTGAAAAATAAAG
* * *
14983621 TTTCAAAAAAAAAGGTTTTTTTTGGAAAAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAGTT
1 TTTC--AAAAAAA---TATTTTTGGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTT
* **
14983686 TTCAAAAATGGATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTGGAATTTAAAG
61 TTCAAAAAT-GATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTGAAAAATAAAG
14983743 TTTCAAAAAAATATTTTTGGAAAAAAA-TTGAAAGTATCAATTTTTC
1 TTTCAAAAAAATATTTTTGGAAAAAAAGTTGAAAGTATCAATTTTTC
14983789 CTGTACAAAA
Statistics
Matches: 142, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
116 17 0.12
117 15 0.11
118 7 0.05
119 5 0.04
120 13 0.09
121 14 0.10
122 69 0.49
123 2 0.01
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (116 bp):
TTTCAAAAAAATATTTTTGGAAAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTTTTCAA
AAATGATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTGAAAAATAAAG
Found at i:14984966 original size:21 final size:21
Alignment explanation
Indices: 14984917--14984969 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
14984907 TTCATATTAG
*
14984917 ATTTCATCCATGAAAATGTAC
1 ATTTCATTCATGAAAATGTAC
14984938 ATTTCATTCATGAAAATGTAC
1 ATTTCATTCATGAAAATGTAC
14984959 ATTTCATTCAT
1 ATTTCATTCAT
14984970 ACATCAACGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.40
Consensus pattern (21 bp):
ATTTCATTCATGAAAATGTAC
Found at i:14987722 original size:17 final size:16
Alignment explanation
Indices: 14987699--14987738 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
14987689 ATGAAAAATG
14987699 AAAAAAAAAT-GATGAA
1 AAAAAAAAATAGA-GAA
14987715 AGAAAAAAAATAGAGAA
1 A-AAAAAAAATAGAGAA
14987732 AAAAAAA
1 AAAAAAA
14987739 GAAGAAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.32
17 13 0.59
18 2 0.09
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.07
Consensus pattern (16 bp):
AAAAAAAAATAGAGAA
Found at i:14987744 original size:13 final size:14
Alignment explanation
Indices: 14987700--14987745 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 14
14987690 TGAAAAATGA
14987700 AAAAAAAATGATGAAAG
1 AAAAAAAAT-A-G-AAG
14987717 AAAAAAAATAG-AG
1 AAAAAAAATAGAAG
14987730 AAAAAAAA-AGAAG
1 AAAAAAAATAGAAG
14987743 AAA
1 AAA
14987746 GAATGAGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.07
13 15 0.54
15 1 0.04
16 1 0.04
17 9 0.32
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (14 bp):
AAAAAAAATAGAAG
Found at i:14987753 original size:23 final size:23
Alignment explanation
Indices: 14987713--14987756 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
14987703 AAAAATGATG
14987713 AAAGAAAAAAAATAGAGAAAAAA
1 AAAGAAAAAAAATAGAGAAAAAA
*
14987736 AAAGAAGAAAGAAT-GAGAAAA
1 AAAGAA-AAAAAATAGAGAAAA
14987757 TGAAAAAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (23 bp):
AAAGAAAAAAAATAGAGAAAAAA
Found at i:14987766 original size:23 final size:23
Alignment explanation
Indices: 14987710--14987766 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
14987700 AAAAAAAATG
14987710 ATGAAAGAAA-AAAAATAGAGAAA
1 ATGAAA-AAAGAAAAATAGAGAAA
*
14987733 A-AAAAAGAAGAAAGAAT-GAGAAA
1 ATGAAAA-AAGAAA-AATAGAGAAA
14987756 ATGAAAAAAGA
1 ATGAAAAAAGA
14987767 GATTCAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
21 1 0.04
22 5 0.18
23 15 0.54
24 7 0.25
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (23 bp):
ATGAAAAAAGAAAAATAGAGAAA
Found at i:14989664 original size:42 final size:41
Alignment explanation
Indices: 14989618--14989807 Score: 265
Period size: 42 Copynumber: 4.6 Consensus size: 41
14989608 AAAGTTTCGT
* **
14989618 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTTGAAG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTCGTGG
* *
14989660 TGCCTCTGTTTAGAAGAGCAATTTACTTTTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
*
14989701 TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
* * *
14989742 TTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTGGTGG
1 -TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
*
14989784 TGCCTCTGCTTAGAGGAGC-ATTTA
1 TGCCTCTGTTTAGAGGAGCAATTTA
14989808 TTTTGAAGTC
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
40 5 0.04
41 62 0.47
42 66 0.50
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (41 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
Found at i:14989707 original size:41 final size:41
Alignment explanation
Indices: 14989590--14989836 Score: 281
Period size: 41 Copynumber: 6.0 Consensus size: 41
14989580 ATGATTGTTA
* *
14989590 AGGAGTAATTTATTTTTCAAAGTTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAG
* * **
14989631 AGGAGCAATTTACTTTCCAAAAGTTGAAGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
14989673 AAGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
14989714 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTTGCCTCTATTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGG-TGCCTCTGTTTAG
* *
14989756 AGGAGCAATTTACTTTTCAAAGTGGTGGTGCCTCTGCTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
14989797 AGGAGC-ATTTA-TTTT-GAAGTCATGGTGCTTCTGCTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
14989835 AG
1 AG
14989837 ATTTTACTTA
Statistics
Matches: 181, Mismatches: 19, Indels: 15
0.84 0.09 0.07
Matches are distributed among these distances:
38 21 0.12
39 4 0.02
40 11 0.06
41 74 0.41
42 67 0.37
43 4 0.02
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:14989747 original size:83 final size:83
Alignment explanation
Indices: 14989596--14989811 Score: 296
Period size: 83 Copynumber: 2.6 Consensus size: 83
14989586 GTTAAGGAGT
* * *
14989596 AATTTATTTTTCAAAGTTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTTGAA
1 AATTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTCGAA
*
14989659 GTGCCTCTGTTTAGAAGAGC
64 GTGCCTCTATTTAGAAGAGC
**
14989679 AATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCC-AAAGTCGTGGT
1 AATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTCGAAG-
*
14989743 TGCCTCTATTTAGAGGAGC
65 TGCCTCTATTTAGAAGAGC
* *
14989762 AATTTACTTTTCAAAGTGGTGGTGCCTCTGCTTAGAGGAGC-ATTTATTTT
1 AATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTT
14989812 GAAGTCATGG
Statistics
Matches: 121, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
81 4 0.03
82 16 0.13
83 101 0.83
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (83 bp):
AATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAAGTCGAAGT
GCCTCTATTTAGAAGAGC
Found at i:14992941 original size:18 final size:18
Alignment explanation
Indices: 14992915--14993039 Score: 114
Period size: 18 Copynumber: 6.9 Consensus size: 18
14992905 CTTTGTTCTT
14992915 GATACATTTGAGGTGGAG
1 GATACATTTGAGGTGGAG
* *
14992933 GATATATTTGA---GGAT
1 GATACATTTGAGGTGGAG
*
14992948 GATACATTTGTGGTGGAG
1 GATACATTTGAGGTGGAG
* * * *
14992966 GGTACATTTGTGGT-AACT
1 GATACATTTGAGGTGGA-G
14992984 GATACATTTGAGGTGGAG
1 GATACATTTGAGGTGGAG
*
14993002 GATATATTTGAGGAGGTGGAG
1 GATACATTT---GAGGTGGAG
14993023 GATACATTTGAGGTGGA
1 GATACATTTGAGGTGGA
14993040 TAATAACCAT
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
15 12 0.14
17 1 0.01
18 54 0.64
19 1 0.01
21 17 0.20
ACGTcount: A:0.27, C:0.05, G:0.36, T:0.32
Consensus pattern (18 bp):
GATACATTTGAGGTGGAG
Found at i:14993017 original size:21 final size:21
Alignment explanation
Indices: 14992993--14993035 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
14992983 TGATACATTT
*
14992993 GAGGTGGAGGATATATTTGAG
1 GAGGTGGAGGATACATTTGAG
14993014 GAGGTGGAGGATACATTTGAG
1 GAGGTGGAGGATACATTTGAG
14993035 G
1 G
14993036 TGGATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.02, G:0.44, T:0.26
Consensus pattern (21 bp):
GAGGTGGAGGATACATTTGAG
Found at i:14996865 original size:26 final size:26
Alignment explanation
Indices: 14996816--14996864 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
14996806 TTTCAAAAAT
*
14996816 TAAAAGTTTTCAAACTTATATTTTAA
1 TAAAAGTTTTCAAACCTATATTTTAA
14996842 TAAAA-TTTTCAAACCTATATTTT
1 TAAAAGTTTTCAAACCTATATTTT
14996865 TTATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (26 bp):
TAAAAGTTTTCAAACCTATATTTTAA
Found at i:14997109 original size:20 final size:20
Alignment explanation
Indices: 14997087--14997123 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14997077 AACAACAAAA
*
14997087 AAAATTA-AAATTCATATGC
1 AAAATTATAAATTAATATGC
14997106 AAAATTATAAATTAATAT
1 AAAATTATAAATTAATAT
14997124 ATAACACAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (20 bp):
AAAATTATAAATTAATATGC
Found at i:14997378 original size:13 final size:13
Alignment explanation
Indices: 14997360--14997391 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
14997350 ACCCCATCAA
14997360 TCCCTCTCCACCT
1 TCCCTCTCCACCT
14997373 TCCCTCTCCACCT
1 TCCCTCTCCACCT
14997386 TCCCTC
1 TCCCTC
14997392 CCAACATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.62, G:0.00, T:0.31
Consensus pattern (13 bp):
TCCCTCTCCACCT
Found at i:14997428 original size:40 final size:40
Alignment explanation
Indices: 14997373--14997459 Score: 122
Period size: 40 Copynumber: 2.2 Consensus size: 40
14997363 CTCTCCACCT
* * * *
14997373 TCCCTCTCCACCTTCCCTCCCAACATCCTACCACACCCAA
1 TCCCTCCCCACCTTCCCCCCCAACACCCCACCACACCCAA
*
14997413 TCCCTCCCCACCTTCCCCCCCAACGCCCCACCACACCCAA
1 TCCCTCCCCACCTTCCCCCCCAACACCCCACCACACCCAA
14997453 T-CCTCCC
1 TCCCTCCC
14997460 ACCCCCCTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 6 0.14
40 36 0.86
ACGTcount: A:0.20, C:0.63, G:0.01, T:0.16
Consensus pattern (40 bp):
TCCCTCCCCACCTTCCCCCCCAACACCCCACCACACCCAA
Found at i:14998587 original size:24 final size:24
Alignment explanation
Indices: 14998551--14998596 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
14998541 TCAAGTCAAG
* *
14998551 ATTTTTTTTTTTGGTATTTTATTT
1 ATTTATTTATTTGGTATTTTATTT
* *
14998575 ATTTATTTATTTGTTTTTTTAT
1 ATTTATTTATTTGGTATTTTAT
14998597 GTGTTAGTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (24 bp):
ATTTATTTATTTGGTATTTTATTT
Found at i:14998827 original size:63 final size:62
Alignment explanation
Indices: 14998667--14998824 Score: 186
Period size: 63 Copynumber: 2.6 Consensus size: 62
14998657 TTTCAAAAAG
* *
14998667 AAATATTTTT-GAGAAAAAGTTGAAAAGTATCAA-TTT--CCTTACAATTAAAGGTTTCAAA
1 AAATATTTTTGGGGAAAAAGTTGAAAAGTATCAATTTTCCCCTGACAATTAAAGGTTTCAAA
* * * *
14998725 AAAAATATTTGGGG-AAACGTTGAAAAGTATCAATGTTTCCCCTCGACATTTAAA-GTTTCAAA
1 AAATATTTTTGGGGAAAAAGTTGAAAAGTATCAAT-TTTCCCCT-GACAATTAAAGGTTTCAAA
14998787 AACATATTTTTGGGGAAAAAGTTG-AAAGTATCAATTTT
1 AA-ATATTTTTGGGGAAAAAGTTGAAAAGTATCAATTTT
14998825 TCCTGTTACA
Statistics
Matches: 83, Mismatches: 9, Indels: 12
0.80 0.09 0.12
Matches are distributed among these distances:
58 26 0.31
59 2 0.02
60 3 0.04
62 16 0.19
63 29 0.35
64 7 0.08
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (62 bp):
AAATATTTTTGGGGAAAAAGTTGAAAAGTATCAATTTTCCCCTGACAATTAAAGGTTTCAAA
Found at i:14999725 original size:18 final size:18
Alignment explanation
Indices: 14999689--14999727 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14999679 TATATTTTAT
*
14999689 ATAATTAATTGAAATATA
1 ATAATTAATTGAAAAATA
14999707 ATAATTAATT-ATAAAATA
1 ATAATTAATTGA-AAAATA
14999725 ATA
1 ATA
14999728 CTAATCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (18 bp):
ATAATTAATTGAAAAATA
Found at i:15000208 original size:18 final size:17
Alignment explanation
Indices: 15000185--15000225 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
15000175 TATATAGAAT
* *
15000185 AATTATATATTTATTTG
1 AATTATATATATAATTG
15000202 AAATTATATATATAATTG
1 -AATTATATATATAATTG
15000220 AATTAT
1 AATTAT
15000226 TTTATTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
AATTATATATATAATTG
Found at i:15000844 original size:46 final size:44
Alignment explanation
Indices: 15000772--15000859 Score: 106
Period size: 46 Copynumber: 2.0 Consensus size: 44
15000762 AGAGGAACCT
* *
15000772 TTTATTTTTCAAATTCATTGAGCCTCTATTTAGAAAAGCTTTTTA
1 TTTATTTTTCAAATTCATTGAACCTCTACTTAGAAAAG-TTTTTA
* *
15000817 TTTATTTTTTCAAAGTT-GTTGAACCTCTACTTAGAGAAGTTTT
1 TTTA-TTTTTCAAA-TTCATTGAACCTCTACTTAGAAAAGTTTT
15000860 ATGTCATTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
45 8 0.22
46 27 0.73
47 2 0.05
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.49
Consensus pattern (44 bp):
TTTATTTTTCAAATTCATTGAACCTCTACTTAGAAAAGTTTTTA
Found at i:15001497 original size:30 final size:31
Alignment explanation
Indices: 15001455--15001517 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
15001445 AATTATAACT
*
15001455 TAATAAATAATATTATAAAT-TACTTATTAA
1 TAATAAATAATATAATAAATATACTTATTAA
*
15001485 TAAT-AATAAATATAATAAATATATTTATTAA
1 TAATAAAT-AATATAATAAATATACTTATTAA
15001516 TA
1 TA
15001518 TAGAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 3 0.10
30 15 0.52
31 11 0.38
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (31 bp):
TAATAAATAATATAATAAATATACTTATTAA
Found at i:15002418 original size:21 final size:23
Alignment explanation
Indices: 15002392--15002443 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 23
15002382 AATTATAAAC
*
15002392 AATTATTAAAT-TTATATTAT-T
1 AATTATTAAATAATATATTATAT
15002413 AATTATT-AATAATATATTATAT
1 AATTATTAAATAATATATTATAT
*
15002435 ACTTATTAA
1 AATTATTAA
15002444 TACTATTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 15 0.58
22 7 0.27
23 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTATTAAATAATATATTATAT
Found at i:15002890 original size:24 final size:22
Alignment explanation
Indices: 15002855--15002899 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
15002845 TAAAATAAAC
15002855 ATTAAATAAATATAT-AATTAAT
1 ATTAAATAAATA-ATCAATTAAT
15002877 ATTAAATTAGAATAATCAATTAA
1 ATTAAA-TA-AATAATCAATTAA
15002900 GTCATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 4 0.20
24 10 0.50
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
ATTAAATAAATAATCAATTAAT
Found at i:15003808 original size:14 final size:13
Alignment explanation
Indices: 15003783--15003813 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
15003773 AATTAATTTA
15003783 ATTAAATATTAAT
1 ATTAAATATTAAT
15003796 ATTAAATTATTAAT
1 ATTAAA-TATTAAT
15003810 ATTA
1 ATTA
15003814 CTAAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAAATATTAAT
Found at i:15004136 original size:7 final size:7
Alignment explanation
Indices: 15004124--15004189 Score: 53
Period size: 7 Copynumber: 8.9 Consensus size: 7
15004114 CCCATATATA
15004124 TATTAAT
1 TATTAAT
15004131 TATTAAT
1 TATTAAT
15004138 TATTAAT
1 TATTAAT
15004145 TATTTAAT
1 TA-TTAAT
**
15004153 ATATTTTT
1 -TATTAAT
15004161 TATT-AT
1 TATTAAT
*
15004167 GATATATAGT
1 --TAT-TAAT
15004177 TATTAAT
1 TATTAAT
15004184 TATTAA
1 TATTAA
15004190 ATAAATTAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
6 1 0.02
7 29 0.60
8 14 0.29
9 3 0.06
10 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (7 bp):
TATTAAT
Found at i:15004321 original size:21 final size:22
Alignment explanation
Indices: 15004288--15004342 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 22
15004278 TAATCATTTT
15004288 TATTAATTAATAAATAAATTAA
1 TATTAATTAATAAATAAATTAA
*
15004310 TATTAA-TAATAACTAAATTGATAA
1 TATTAATTAATAAATAAA-T--TAA
15004334 TATTAATTA
1 TATTAATTA
15004343 TTACAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 10 0.36
22 7 0.25
24 9 0.32
25 2 0.07
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
TATTAATTAATAAATAAATTAA
Found at i:15004351 original size:24 final size:24
Alignment explanation
Indices: 15004307--15004352 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
15004297 ATAAATAAAT
*
15004307 TAATATTAATAATAACTAAATTGA
1 TAATATTAATAATAACAAAATTGA
* *
15004331 TAATATTAATTATTACAAAATT
1 TAATATTAATAATAACAAAATT
15004353 ATTTATATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.41
Consensus pattern (24 bp):
TAATATTAATAATAACAAAATTGA
Found at i:15004934 original size:180 final size:176
Alignment explanation
Indices: 15004589--15005164 Score: 541
Period size: 180 Copynumber: 3.2 Consensus size: 176
15004579 TAATTTTTAA
* * * *
15004589 ATAAATTTATTTTTAAAATT-TTTACTTATTAATTTTTTGGAACATTAATAAATTTGTATTATTT
1 ATAAATTTATTTTTTAAATTCTTTACTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTT
* * ** *
15004653 TATTTGAAATAAGCTTAAATGAATAGAACCAATTGTTTTATGACAAAACAAAAGGTTGTAATGTT
65 TATTTCAAATAAGC-TAAATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTTACAATGAT
15004718 TTAAAATAGATAATTATTAAGATAATCATAACTATTTGAACTTGTTCG
129 TTAAAATAGATAATTATTAAGATAATCATAACTATTTGAACTTGTTCG
* *
15004766 ATAAGCATTTATTTTTTTAATTCTCTTACTTTTTAATTTTTGAAATATTAATAAATTAGTATTAT
1 ATAA--ATTTATTTTTTAAATTCT-TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAT
* * * *
15004831 TTTATTTCAAATAAGCTAACATGAATTGAAACAATTTTTTTATTACAAAACAAAATGTTACAATG
63 TTTATTTCAAATAAGCTAA-ATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTTACAATG
* ** * * *
15004896 ATTTGAGGTAGATAATTATTCAA-ATAGTCATGACTATTTGAACTTGTTTG
127 ATTTAAAATAGATAATTATT-AAGATAATCATAACTATTTGAACTTGTTCG
* * ** * * *
15004946 ATAAACTTATTTTTTAAAAATCTTTTACTTATTAATGGTTGAAATATTAATAAGTCAATATTATT
1 ATAAATTTATTTTTT-AAATTC-TTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATT
* * * ** * * * * *
15005011 TTAATCCGAATAAGCTCGTATGGATGGAAACAATTGTTTTATGACAAAACAAAAAAGTCATAA-G
64 TTATTTCAAATAAGCT-AAATGAATAGAAACAATTGTTTTATGACAAAAC-AAAAGGTTACAATG
* * * * * * *
15005075 AATTTGAAATAAATAATTATTCATATAGTCATAA-TGATTTGAATTTGTTTG
127 -ATTTAAAATAGATAATTATTAAGATAATCATAACT-ATTTGAACTTGTTCG
*
15005126 ATAAATAGATTTATTTTTTAAA-TCTTTTATTTATTAATT
1 AT--A-A-ATTTATTTTTTAAATTC-TTTACTTATTAATT
15005165 GTCTTATTAA
Statistics
Matches: 331, Mismatches: 51, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
177 4 0.01
178 10 0.03
179 99 0.30
180 176 0.53
181 12 0.04
182 16 0.05
183 4 0.01
184 10 0.03
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (176 bp):
ATAAATTTATTTTTTAAATTCTTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT
ATTTCAAATAAGCTAAATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTTACAATGATTT
AAAATAGATAATTATTAAGATAATCATAACTATTTGAACTTGTTCG
Found at i:15005232 original size:9 final size:9
Alignment explanation
Indices: 15005212--15005240 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15005202 TATAACTAAA
15005212 AATTAA-AT
1 AATTAATAT
15005220 AATTAATAT
1 AATTAATAT
15005229 AATTAATAT
1 AATTAATAT
15005238 AAT
1 AAT
15005241 ATCAAACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (9 bp):
AATTAATAT
Found at i:15005594 original size:22 final size:22
Alignment explanation
Indices: 15005567--15005614 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
15005557 CTAAACCTAT
15005567 TATTTATA-ATATAATAAATTTA
1 TATTTATATAT-TAATAAATTTA
* *
15005589 TATTTATATATTTATATATTTA
1 TATTTATATATTAATAAATTTA
15005611 TATT
1 TATT
15005615 ATTGTTAGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TATTTATATATTAATAAATTTA
Found at i:15005598 original size:8 final size:8
Alignment explanation
Indices: 15005587--15005613 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
15005577 ATAATAAATT
15005587 TATATTTA
1 TATATTTA
15005595 TATATTTA
1 TATATTTA
15005603 TATATTTA
1 TATATTTA
15005611 TAT
1 TAT
15005614 TATTGTTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (8 bp):
TATATTTA
Found at i:15006553 original size:21 final size:21
Alignment explanation
Indices: 15006498--15006562 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
15006488 GAACCAATCA
* *
15006498 ATCCCCTTAAGCAAGGGATTG
1 ATCCCCTCAAGCAAGGGATCG
*** *
15006519 ATCAGGTCATGCAAGGGATCG
1 ATCCCCTCAAGCAAGGGATCG
*
15006540 ATCCCCTCAAGCAAGAGATCG
1 ATCCCCTCAAGCAAGGGATCG
15006561 AT
1 AT
15006563 TGGGCAAAGA
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.20
Consensus pattern (21 bp):
ATCCCCTCAAGCAAGGGATCG
Found at i:15011277 original size:21 final size:21
Alignment explanation
Indices: 15011251--15011298 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
15011241 ACATGAACCA
* **
15011251 ATCGATCCCCTTAAGTAAGGG
1 ATCGATCCCCTCAAACAAGGG
15011272 ATCGATCCCCTCAAACAAGGG
1 ATCGATCCCCTCAAACAAGGG
15011293 ATCGAT
1 ATCGAT
15011299 TGGGTCTAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (21 bp):
ATCGATCCCCTCAAACAAGGG
Found at i:15012098 original size:12 final size:12
Alignment explanation
Indices: 15012064--15012147 Score: 66
Period size: 12 Copynumber: 6.9 Consensus size: 12
15012054 ATTATTAAGA
15012064 ATAATTAATTATT
1 ATAA-TAATTATT
15012077 ATATATAATTATT
1 ATA-ATAATTATT
* *
15012090 TTAATAATTAAT
1 ATAATAATTATT
*
15012102 ATAATAATTA-A
1 ATAATAATTATT
*
15012113 ATTA-AATTATT
1 ATAATAATTATT
15012124 AT-ATAATTTATT
1 ATAATAA-TTATT
*
15012136 ACTTATAATTAT
1 A-TAATAATTAT
15012148 AAAATAATAA
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
10 6 0.10
11 7 0.12
12 23 0.39
13 18 0.31
14 5 0.08
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (12 bp):
ATAATAATTATT
Found at i:15012145 original size:25 final size:23
Alignment explanation
Indices: 15012074--15012147 Score: 66
Period size: 22 Copynumber: 3.2 Consensus size: 23
15012064 ATAATTAATT
15012074 ATTA-TATATAATTATT-TTAATA
1 ATTATTATATAATTATTATT-ATA
* *
15012096 ATTAATATAATAATTA-AATTA-A
1 ATTATTAT-ATAATTATTATTATA
15012118 ATTATTATATAATTTATTACTTATA
1 ATTATTATATAA-TTATTA-TTATA
15012143 ATTAT
1 ATTAT
15012148 AAAATAATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
21 4 0.10
22 15 0.36
23 5 0.12
24 12 0.29
25 6 0.14
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTATTATATAATTATTATTATA
Found at i:15012154 original size:46 final size:47
Alignment explanation
Indices: 15012066--15012163 Score: 123
Period size: 46 Copynumber: 2.1 Consensus size: 47
15012056 TATTAAGAAT
* *
15012066 AATT-AATTATTATATATAATTATTTTAATAATTAATATAATAATTA
1 AATTAAATTATTATATATAATTATTTTAATAATTAATAAAATAATAA
*
15012112 AATTAAATTATTATATA-ATTTATTACTT-ATAATT-ATAAAATAATAA
1 AATTAAATTATTATATATAATTATT--TTAATAATTAATAAAATAATAA
15012158 AATTAA
1 AATTAA
15012164 TATATCAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
46 26 0.57
47 18 0.39
48 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (47 bp):
AATTAAATTATTATATATAATTATTTTAATAATTAATAAAATAATAA
Done.