Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 82 of 129
Found at i:15012232 original size:36 final size:36
Alignment explanation
Indices: 15012192--15012260 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
15012182 TAAGATTATA
* *
15012192 ATATTTATTTA-AATAATAAATAATTATAA-ATAAGGT
1 ATATTAATTTATAA-AAT-AATAACTATAATATAAGGT
15012228 ATATTAATTTATAAAATAATAACTATAATATAA
1 ATATTAATTTATAAAATAATAACTATAATATAA
15012261 TTATAAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 17 0.59
37 2 0.07
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (36 bp):
ATATTAATTTATAAAATAATAACTATAATATAAGGT
Found at i:15013331 original size:6 final size:6
Alignment explanation
Indices: 15013312--15013361 Score: 61
Period size: 6 Copynumber: 8.5 Consensus size: 6
15013302 AATAATATTG
15013312 TATAA- TAT-AT TATAAT TATAAT TATTAATT TATAAT TATAAT TAT-AT
1 TATAAT TATAAT TATAAT TATAAT TA-TAA-T TATAAT TATAAT TATAAT
15013359 TAT
1 TAT
15013362 TTATATATTA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.02
5 11 0.27
6 20 0.49
7 6 0.15
8 3 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TATAAT
Found at i:15013332 original size:26 final size:26
Alignment explanation
Indices: 15013303--15013366 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
15013293 TAATAATTTA
15013303 ATAATATTGTATAATAT-ATTATAATT
1 ATAATATT-TATAATATAATTATAATT
* *
15013329 ATAATTATTAAT-TTATAATTATAATT
1 ATAA-TATTTATAATATAATTATAATT
*
15013355 ATATTATTTATA
1 ATAATATTTATA
15013367 TATTAATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
25 9 0.29
26 18 0.58
27 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATAATATTTATAATATAATTATAATT
Found at i:15013344 original size:20 final size:20
Alignment explanation
Indices: 15013321--15013388 Score: 82
Period size: 20 Copynumber: 3.2 Consensus size: 20
15013311 GTATAATATA
15013321 TTATAATTATAATTATTAAT
1 TTATAATTATAATTATTAAT
*
15013341 TTATAATTATAATTATATTAT
1 TTATAATTATAATTAT-TAAT
*
15013362 TTATATATTAATAAATATTAAT
1 TTATA-ATT-ATAATTATTAAT
*
15013384 ATATA
1 TTATA
15013389 GGATTATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.39
21 8 0.20
22 10 0.24
23 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATAATTATAATTATTAAT
Found at i:15013373 original size:26 final size:26
Alignment explanation
Indices: 15013316--15013369 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 26
15013306 ATATTGTATA
15013316 ATAT-ATTATAATTATAATTATTAAT
1 ATATAATTATAATTATAATTATTAAT
* *
15013341 TTATAATTATAATTAT-ATTATTTAT
1 ATATAATTATAATTATAATTATTAAT
15013366 ATAT
1 ATAT
15013370 TAATAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATATAATTATAATTATAATTATTAAT
Found at i:15013884 original size:29 final size:29
Alignment explanation
Indices: 15013852--15013910 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
15013842 ATTAGTATAA
*
15013852 ATTATAATAATTATAATAAT-AATATTATT
1 ATTATAATAA-TAAAATAATAAATATTATT
* *
15013881 ATTATACTAATAAAATAATAAATGTTATT
1 ATTATAATAATAAAATAATAAATATTATT
15013910 A
1 A
15013911 ATAATCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (29 bp):
ATTATAATAATAAAATAATAAATATTATT
Found at i:15014327 original size:24 final size:25
Alignment explanation
Indices: 15014293--15014339 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
15014283 AATCTTAACT
15014293 TAATTAGTATA-ACTAATAATATTAC
1 TAATTAGTATATA-TAATAATATTAC
15014318 TAATTA-TATATATAATAATATT
1 TAATTAGTATATATAATAATATT
15014340 TATTATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (25 bp):
TAATTAGTATATATAATAATATTAC
Found at i:15014666 original size:27 final size:27
Alignment explanation
Indices: 15014636--15014688 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
15014626 TATTATAAAC
15014636 TATTATA-ATTTATCT-ATAAATTAATAT
1 TATTATATATTTAT-TAAT-AATTAATAT
15014663 TATTATATATTTATTAATAATTAATA
1 TATTATATATTTATTAATAATTAATA
15014689 ATTGGTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTATATATTTATTAATAATTAATAT
Found at i:15015248 original size:23 final size:23
Alignment explanation
Indices: 15015185--15015250 Score: 62
Period size: 25 Copynumber: 2.8 Consensus size: 23
15015175 AATTATAAGT
*
15015185 TATAATAATAACTAGTAAATATA
1 TATAATAATAACTATTAAATATA
* **
15015208 TA-AGATATATTAATTATTTTATATA
1 TATA-ATA-A-TAACTATTAAATATA
15015233 TATAATAATAACTATTAA
1 TATAATAATAACTATTAA
15015251 TATTAATATT
Statistics
Matches: 32, Mismatches: 7, Indels: 8
0.68 0.15 0.17
Matches are distributed among these distances:
22 1 0.03
23 12 0.38
24 2 0.06
25 16 0.50
26 1 0.03
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (23 bp):
TATAATAATAACTATTAAATATA
Found at i:15015372 original size:27 final size:26
Alignment explanation
Indices: 15015320--15015374 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 26
15015310 TTCGTTAATT
15015320 ATATTATACTTAAATTATTATTAAATA
1 ATATTATACTTAAATTA-TATTAAATA
*
15015347 ATATTATTATTTAAATTA-ATTCAAATA
1 ATATTA-TACTTAAATTATATT-AAATA
15015374 A
1 A
15015375 AGATTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 3 0.12
27 12 0.48
28 10 0.40
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (26 bp):
ATATTATACTTAAATTATATTAAATA
Found at i:15015687 original size:14 final size:14
Alignment explanation
Indices: 15015670--15015716 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
15015660 AAATAAAATA
15015670 TATAAATTATTTAT
1 TATAAATTATTTAT
*
15015684 TATAAATAATCATT-T
1 TATAAATTAT--TTAT
15015699 TA-AAATTATTTAT
1 TATAAATTATTTAT
15015712 TATAA
1 TATAA
15015717 CTAATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
12 2 0.07
13 3 0.11
14 17 0.63
15 3 0.11
16 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (14 bp):
TATAAATTATTTAT
Found at i:15015734 original size:28 final size:29
Alignment explanation
Indices: 15015669--15015739 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 29
15015659 AAAATAAAAT
*
15015669 ATATAAATTATTTATTATAAATAATCATT
1 ATATAAATTATTTATTATAAATAATCATA
* *
15015698 TTA-AAATTATTTATTATAACTAAT-ATA
1 ATATAAATTATTTATTATAAATAATCATA
* *
15015725 ATATATATTAGTTAT
1 ATATAAATTATTTAT
15015740 AATATAATCA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
27 4 0.11
28 29 0.83
29 2 0.06
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (29 bp):
ATATAAATTATTTATTATAAATAATCATA
Found at i:15016048 original size:12 final size:11
Alignment explanation
Indices: 15016033--15016135 Score: 68
Period size: 12 Copynumber: 8.6 Consensus size: 11
15016023 TTTTAATATT
15016033 TATTAATTATA
1 TATTAATTATA
15016044 CTATTAATTATTA
1 -TATTAATTA-TA
15016057 TATTTAATTATA
1 TA-TTAATTATA
15016069 T-TTAATTATTTA
1 TATTAATTA--TA
15016081 TAATATAATTA-A
1 T-AT-TAATTATA
*
15016093 GCTATTAGA-TAAA
1 --TATTA-ATTATA
*
15016106 TATTAATATAAA
1 TATTAAT-TATA
15016118 TATTAATTATA
1 TATTAATTATA
15016129 TATTAAT
1 TATTAAT
15016136 ATTAAACAAA
Statistics
Matches: 77, Mismatches: 1, Indels: 27
0.73 0.01 0.26
Matches are distributed among these distances:
10 8 0.10
11 15 0.19
12 33 0.43
13 13 0.17
14 2 0.03
15 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (11 bp):
TATTAATTATA
Found at i:15016084 original size:10 final size:11
Alignment explanation
Indices: 15016025--15016081 Score: 55
Period size: 10 Copynumber: 5.1 Consensus size: 11
15016015 ATTATTACTT
15016025 TTAA-TATTTA
1 TTAATTATTTA
*
15016035 TTAATTATACTA
1 TTAATTAT-TTA
15016047 TTAATTATTATA
1 TTAATTATT-TA
*
15016059 TTTAATTATAT-
1 -TTAATTATTTA
15016070 TTAATTATTTA
1 TTAATTATTTA
15016081 T
1 T
15016082 AATATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
10 13 0.34
11 4 0.11
12 13 0.34
13 8 0.21
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (11 bp):
TTAATTATTTA
Found at i:15016140 original size:29 final size:26
Alignment explanation
Indices: 15016104--15016168 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 26
15016094 CTATTAGATA
*
15016104 AATATTAATATAAATATTAATTATATATT
1 AATATTAATA-AAA-ATT-ATTAAATATT
*
15016133 AATATTAA-ACAAATTATTAAATATT
1 AATATTAATAAAAATTATTAAATATT
15016158 AATAATTAATA
1 AAT-ATTAATA
15016169 CGCATGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 12 0.38
26 8 0.25
27 3 0.09
28 1 0.03
29 8 0.25
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
AATATTAATAAAAATTATTAAATATT
Found at i:15016244 original size:10 final size:11
Alignment explanation
Indices: 15016227--15016258 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
15016217 TTGATATAAG
15016227 TAATTAAATTA
1 TAATTAAATTA
15016238 TAA-TAAATT-
1 TAATTAAATTA
15016247 TAATTAAATTA
1 TAATTAAATTA
15016258 T
1 T
15016259 GATATATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 3 0.16
10 12 0.63
11 4 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAATTAAATTA
Found at i:15016560 original size:14 final size:15
Alignment explanation
Indices: 15016543--15016578 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
15016533 TTTATATACT
15016543 ATTAAT-TATAAATA
1 ATTAATATATAAATA
15016557 ATT-ATATATAAATA
1 ATTAATATATAAATA
15016571 ATT-ATATA
1 ATTAATATA
15016579 ACTAATAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 2 0.10
14 19 0.90
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATTAATATATAAATA
Found at i:15017359 original size:13 final size:12
Alignment explanation
Indices: 15017343--15017403 Score: 67
Period size: 13 Copynumber: 5.2 Consensus size: 12
15017333 TAAAATATAA
15017343 TATAATTATATAT
1 TATAATTA-ATAT
15017356 TATAATTAATAT
1 TATAATTAATAT
*
15017368 T-TATTTAATAT
1 TATAATTAATAT
15017379 TAATAATTAAT-T
1 T-ATAATTAATAT
15017391 T-TAATTAAT-T
1 TATAATTAATAT
15017401 TAT
1 TAT
15017404 TAGTATACCT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
10 10 0.23
11 11 0.26
12 7 0.16
13 15 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TATAATTAATAT
Found at i:15017397 original size:17 final size:17
Alignment explanation
Indices: 15017344--15017399 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
15017334 AAAATATAAT
15017344 ATAATTATATATTATAATTA
1 ATAATTA-AT-TT-TAATTA
* *
15017364 AT-ATTTATTTAATATTA
1 ATAATTAATTTTA-ATTA
15017381 ATAATTAATTTTAATTA
1 ATAATTAATTTTAATTA
15017398 AT
1 AT
15017400 TTATTAGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 1 0.03
17 14 0.47
18 10 0.33
19 3 0.10
20 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATAATTAATTTTAATTA
Found at i:15017477 original size:39 final size:40
Alignment explanation
Indices: 15017434--15017525 Score: 93
Period size: 43 Copynumber: 2.3 Consensus size: 40
15017424 ATTTAAATAA
*
15017434 ATTAATTATTAATA-AAATAATTTAATATAA-AAATTACAT
1 ATTAATTATTAATATAAATAA-TTAATAAAACAAATTACAT
* *
15017473 ATTAATAATTATATATTTAAATAATTAATAAAACAAATTATAT
1 ATTAATTATTA-ATA--TAAATAATTAATAAAACAAATTACAT
15017516 A-T-ATTATTAA
1 ATTAATTATTAA
15017526 GTTTATAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
39 10 0.23
40 4 0.09
41 6 0.14
42 9 0.20
43 15 0.34
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.42
Consensus pattern (40 bp):
ATTAATTATTAATATAAATAATTAATAAAACAAATTACAT
Found at i:15017497 original size:16 final size:16
Alignment explanation
Indices: 15017448--15017499 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 16
15017438 ATTATTAATA
*
15017448 AAATAATT-TA-ATAT
1 AAATAATTATATATTT
*
15017462 AAA-AATTACATA-TT
1 AAATAATTATATATTT
15017476 -AATAATTATATATTT
1 AAATAATTATATATTT
15017491 AAATAATTA
1 AAATAATTA
15017500 ATAAAACAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
13 6 0.20
14 13 0.43
15 3 0.10
16 8 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATAATTATATATTT
Found at i:15018342 original size:20 final size:19
Alignment explanation
Indices: 15018283--15018343 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
15018273 TGCCTTACCC
15018283 GATCGATCCCCTTATTTAAGG
1 GATCGAT-CCCTTATTT-AGG
* * *
15018304 GATCTATCCATTTTTTAGG
1 GATCGATCCCTTATTTAGG
*
15018323 TGATCGATCCCTTATGTAGG
1 -GATCGATCCCTTATTTAGG
15018343 G
1 G
15018344 GGATCAATCC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
19 4 0.12
20 22 0.69
21 6 0.19
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (19 bp):
GATCGATCCCTTATTTAGG
Found at i:15019200 original size:15 final size:15
Alignment explanation
Indices: 15019182--15019211 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15019172 AACAACACAT
*
15019182 CAATGTCACATGCCA
1 CAATGTCACAAGCCA
15019197 CAATGTCACAAGCCA
1 CAATGTCACAAGCCA
15019212 TATGAGAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.33, G:0.13, T:0.17
Consensus pattern (15 bp):
CAATGTCACAAGCCA
Found at i:15019390 original size:18 final size:18
Alignment explanation
Indices: 15019358--15019392 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15019348 GGAGATGGAG
* *
15019358 AATGAGGAGATTGATGAC
1 AATGAGGAAAGTGATGAC
15019376 AATGAGGAAAGTGATGA
1 AATGAGGAAAGTGATGA
15019393 GAAGGCTGCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.34, T:0.20
Consensus pattern (18 bp):
AATGAGGAAAGTGATGAC
Found at i:15027500 original size:11 final size:11
Alignment explanation
Indices: 15027484--15027603 Score: 56
Period size: 11 Copynumber: 11.0 Consensus size: 11
15027474 GCTAACAATA
15027484 TATAATATTAT
1 TATAATATTAT
15027495 TATAATTATATAAT
1 TATAA-TAT-T-AT
* * *
15027509 AAACAATAATAT
1 -TATAATATTAT
*
15027521 TAT-TTATTAT
1 TATAATATTAT
15027531 T-T-ATAGTTAT
1 TATAATA-TTAT
15027541 TATAATATTAT
1 TATAATATTAT
* *
15027552 TAAAATAGTAT
1 TATAATATTAT
*
15027563 TA-AGTTATT-T
1 TATA-ATATTAT
*
15027573 TATAAAATTAT
1 TATAATATTAT
15027584 TAT-ATA-TAT
1 TATAATATTAT
*
15027593 TATAATGTTAT
1 TATAATATTAT
15027604 ATATTATAAT
Statistics
Matches: 81, Mismatches: 16, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
9 9 0.11
10 22 0.27
11 33 0.41
12 8 0.10
13 2 0.02
14 4 0.05
15 3 0.04
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (11 bp):
TATAATATTAT
Found at i:15027604 original size:15 final size:16
Alignment explanation
Indices: 15027586--15027627 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
15027576 AAAATTATTA
*
15027586 TATATATTATAAT-GT
1 TATATATTATAATAAT
15027601 TATATATTATAATAAT
1 TATATATTATAATAAT
*
15027617 TTTATATTATA
1 TATATATTATA
15027628 TTAAAACAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
TATATATTATAATAAT
Found at i:15027621 original size:18 final size:18
Alignment explanation
Indices: 15027572--15027623 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
15027562 TTAAGTTATT
15027572 TTATAA-AATTATTATATA
1 TTATAATAATT-TTATATA
* *
15027590 -TATTATAATGTTATATA
1 TTATAATAATTTTATATA
15027607 TTATAATAATTTTATAT
1 TTATAATAATTTTATAT
15027624 TATATTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTATAATAATTTTATATA
Found at i:15027724 original size:28 final size:26
Alignment explanation
Indices: 15027685--15027759 Score: 73
Period size: 28 Copynumber: 2.7 Consensus size: 26
15027675 ATTTTAAAAT
*
15027685 ATTAA-TAATATTAAATTTATATATATG-
1 ATTAATTATTATTAAA-TTATAT-T-TGA
15027712 ATTAATTATTATTTAAATTATATTTGA
1 ATTAATTATTA-TTAAATTATATTTGA
15027739 ATTAATATATTATTAATATTA
1 ATTAAT-TATTATTAA-ATTA
15027760 CTAATTAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
26 2 0.05
27 16 0.38
28 19 0.45
29 5 0.12
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (26 bp):
ATTAATTATTATTAAATTATATTTGA
Found at i:15028491 original size:25 final size:25
Alignment explanation
Indices: 15028463--15028521 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
15028453 AAACTTATAT
15028463 GAATAAAAACATTTGTTTCATGACA
1 GAATAAAAACATTTGTTTCATGACA
*
15028488 GAATAAAAACATTTGTTTTATGACA
1 GAATAAAAACATTTGTTTCATGACA
*
15028513 AAATAAAAA
1 GAATAAAAA
15028522 GTAATAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (25 bp):
GAATAAAAACATTTGTTTCATGACA
Found at i:15028633 original size:21 final size:21
Alignment explanation
Indices: 15028608--15028655 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
15028598 TAAATCTCTT
*
15028608 ATTTATTAA-TAATATATTTAA
1 ATTTAATAATTAATA-ATTTAA
15028629 ATTTAATAATTTAATAATTTAA
1 ATTTAATAA-TTAATAATTTAA
*
15028651 CTTTA
1 ATTTA
15028656 GAAATATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 10 0.43
23 5 0.22
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTTAATAATTAATAATTTAA
Found at i:15028665 original size:23 final size:22
Alignment explanation
Indices: 15028617--15028668 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
15028607 TATTTATTAA
15028617 TAATATATTTAAATTTAATAATT
1 TAATA-ATTTAAATTTAATAATT
*
15028640 TAATAATTTAACTTTAGA-AATAT
1 TAATAATTTAAATTTA-ATAAT-T
15028663 TAATAA
1 TAATAA
15028669 ATTATATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 13 0.50
23 13 0.50
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
TAATAATTTAAATTTAATAATT
Found at i:15030125 original size:30 final size:29
Alignment explanation
Indices: 15030065--15030125 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
15030055 TGATTTATTT
** *
15030065 AAATATATATTAATATATTATGCTATATA
1 AAATATATATTAATATATTATAATAAATA
* *
15030094 AAATATCTAGTTATTATATTATAATAAATA
1 AAATATATA-TTAATATATTATAATAAATA
15030124 AA
1 AA
15030126 CAAGTTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (29 bp):
AAATATATATTAATATATTATAATAAATA
Found at i:15030254 original size:22 final size:22
Alignment explanation
Indices: 15030226--15030393 Score: 89
Period size: 22 Copynumber: 7.3 Consensus size: 22
15030216 TAGTTATTAA
*
15030226 TATTAATAATATTAATATTTAT
1 TATTAATAATATTAATATATAT
*
15030248 TATTAATAATATTAATCAATACAT
1 TATTAATAATATTAAT--ATATAT
15030272 TAATTAATAAT-TTAA-ATAATAT
1 T-ATTAATAATATTAATAT-ATAT
*
15030294 TATTAAATAA-ATTAAAAT-TGAT
1 TATT-AATAATATTAATATAT-AT
*
15030316 TA-TAATATTAATT-ATAATATAT
1 TATTAATAAT-ATTAAT-ATATAT
* **
15030338 TGTTTTTAACTATTAATAAAGTATAT
1 TATTAATAA-TATTAAT--A-TATAT
*
15030364 TAATT-ATAATATTGAATTTATAT
1 T-ATTAATAATATT-AATATATAT
15030387 TATTAAT
1 TATTAAT
15030394 TATTATATAA
Statistics
Matches: 114, Mismatches: 12, Indels: 39
0.69 0.07 0.24
Matches are distributed among these distances:
20 4 0.04
21 8 0.07
22 44 0.39
23 17 0.15
24 12 0.11
25 15 0.13
26 12 0.11
27 2 0.02
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TATTAATAATATTAATATATAT
Found at i:15030331 original size:12 final size:12
Alignment explanation
Indices: 15030231--15030401 Score: 64
Period size: 12 Copynumber: 14.6 Consensus size: 12
15030221 ATTAATATTA
15030231 ATAATATTAA-T
1 ATAATATTAATT
*
15030242 AT-TTATT-ATT
1 ATAATATTAATT
*
15030252 AATAATATTAATC
1 -ATAATATTAATT
*
15030265 A-ATACATTAATT
1 ATA-ATATTAATT
15030277 AATAAT-TTAA--
1 -ATAATATTAATT
15030287 ATAATATT-ATT
1 ATAATATTAATT
15030298 A-AATA--AATT
1 ATAATATTAATT
*
15030307 A-AA-ATTGATT
1 ATAATATTAATT
15030317 ATAATATTAATT
1 ATAATATTAATT
**
15030329 ATAATATATTGTTT
1 AT-A-ATATTAATT
*
15030343 TTAACTATTAA-T
1 ATAA-TATTAATT
*
15030355 AAAGTATATTAATT
1 ATA--ATATTAATT
15030369 ATAATATTGAATTT
1 ATAATATT-AA-TT
*
15030383 ATATTATTAATT
1 ATAATATTAATT
*
15030395 ATTATAT
1 ATAATAT
15030402 AATGATATTG
Statistics
Matches: 118, Mismatches: 19, Indels: 45
0.65 0.10 0.25
Matches are distributed among these distances:
8 1 0.01
9 13 0.11
10 15 0.13
11 8 0.07
12 39 0.33
13 20 0.17
14 22 0.19
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (12 bp):
ATAATATTAATT
Found at i:15030549 original size:23 final size:22
Alignment explanation
Indices: 15030458--15030555 Score: 64
Period size: 23 Copynumber: 4.6 Consensus size: 22
15030448 TTATTATTGT
* * *
15030458 TTATTA-AATTAATATCTAATT
1 TTATTATAATTAAAATATAATA
*
15030479 TTGTT-TAATTAAAA-AT--TA
1 TTATTATAATTAAAATATAATA
* *
15030497 TAATTACAATTAAAATTATAATA
1 TTATTATAATTAAAA-TATAATA
15030520 TTATTATAATTAAAA-ATAATAA
1 TTATTATAATTAAAATATAAT-A
*
15030542 TTAGTTATTATTAA
1 TTA-TTATAATTAA
15030556 GAATTTATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
18 4 0.07
19 8 0.14
20 1 0.02
21 18 0.31
22 4 0.07
23 24 0.41
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (22 bp):
TTATTATAATTAAAATATAATA
Found at i:15030550 original size:29 final size:28
Alignment explanation
Indices: 15030493--15030554 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 28
15030483 TTAATTAAAA
* *
15030493 ATTATAATTACAATTAAAATTATAATATT
1 ATTATAATTAAAAATAAAATTAT-ATATT
15030522 ATTATAATTAAAAATAATAATTAGT-TATT
1 ATTATAATTAAAAATAA-AATTA-TATATT
15030551 ATTA
1 ATTA
15030555 AGAATTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 23 0.79
30 5 0.17
31 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (28 bp):
ATTATAATTAAAAATAAAATTATATATT
Found at i:15030695 original size:25 final size:26
Alignment explanation
Indices: 15030656--15030704 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
15030646 ATTATTATTA
*
15030656 TAATATTGAATTAATAAGATTTAAAT
1 TAATATTGAATTAATAAGAATTAAAT
*
15030682 TAATATT-AATTAATTAGAATTAA
1 TAATATTGAATTAATAAGAATTAA
15030705 TTTGAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (26 bp):
TAATATTGAATTAATAAGAATTAAAT
Found at i:15030803 original size:12 final size:12
Alignment explanation
Indices: 15030788--15030815 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
15030778 CTATAAATAA
15030788 TATTATATAATT
1 TATTATATAATT
15030800 TATTATATAATT
1 TATTATATAATT
15030812 TATT
1 TATT
15030816 TAGTAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TATTATATAATT
Found at i:15031075 original size:15 final size:15
Alignment explanation
Indices: 15031032--15031083 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
15031022 ATGTAATTAT
*
15031032 ATAATAAATATATAA
1 ATAATTAATATATAA
* *
15031047 ATTATTTATATATAA
1 ATAATTAATATATAA
* *
15031062 ATAATTAATGTATAG
1 ATAATTAATATATAA
15031077 ATAATTA
1 ATAATTA
15031084 TTTATTTCAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (15 bp):
ATAATTAATATATAA
Found at i:15031230 original size:15 final size:14
Alignment explanation
Indices: 15031212--15031253 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
15031202 AATTTAATAT
15031212 TATATTAATTAATTC
1 TATATTAA-TAATTC
15031227 TATATTAATAATT-
1 TATATTAATAATTC
15031240 TGATATATAATAAT
1 T-ATAT-TAATAAT
15031254 ATAATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:15031542 original size:28 final size:30
Alignment explanation
Indices: 15031511--15031567 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 30
15031501 TTAATAATAT
*
15031511 AATTATAATTTTAATA-ATTAT-AATTTAC
1 AATTATAATTATAATATATTATGAATTTAC
**
15031539 AATTATTGTTATAATATATTATGAATTTA
1 AATTATAATTATAATATATTATGAATTTA
15031568 TTATGATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 13 0.54
29 5 0.21
30 6 0.25
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (30 bp):
AATTATAATTATAATATATTATGAATTTAC
Found at i:15031765 original size:20 final size:20
Alignment explanation
Indices: 15031737--15031780 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
15031727 TATATTTCTT
*
15031737 ATTATTATTATATGTT-TAAA
1 ATTAATATTATAT-TTATAAA
15031757 ATTAATATTATATTTATAAA
1 ATTAATATTATATTTATAAA
15031777 ATTA
1 ATTA
15031781 TTAATTTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTAATATTATATTTATAAA
Found at i:15032060 original size:20 final size:19
Alignment explanation
Indices: 15032022--15032064 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
15032012 TTAACAAACT
15032022 TATTAATATAATAAATTAA
1 TATTAATATAATAAATTAA
15032041 TATTAATATTAA-ATAATTAA
1 TATTAATA-TAATA-AATTAA
15032061 TATT
1 TATT
15032065 TAGCTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTAATATAATAAATTAA
Found at i:15032302 original size:20 final size:20
Alignment explanation
Indices: 15032277--15032317 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15032267 TTATATTTAA
*
15032277 TTATTAGCTTGGCTAATAAT
1 TTATTAACTTGGCTAATAAT
15032297 TTATTAACTTGGCTAATAAT
1 TTATTAACTTGGCTAATAAT
15032317 T
1 T
15032318 GATAAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (20 bp):
TTATTAACTTGGCTAATAAT
Found at i:15032521 original size:20 final size:19
Alignment explanation
Indices: 15032496--15032556 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
15032486 TTTAATATAG
15032496 TAATTATTTATAGTAATAAA
1 TAATTATTTATA-TAATAAA
*
15032516 TAATTA-TTATACTAATAATT
1 TAATTATTTATA-TAATAA-A
*
15032536 TAATAATTTATATAATAAA
1 TAATTATTTATATAATAAA
15032555 TA
1 TA
15032557 GGCTTTGAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
19 13 0.37
20 17 0.49
21 5 0.14
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
TAATTATTTATATAATAAA
Found at i:15032644 original size:12 final size:12
Alignment explanation
Indices: 15032629--15032653 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15032619 AATAATTAAT
15032629 TTAAATTAATTA
1 TTAAATTAATTA
15032641 TTAAATTAATTA
1 TTAAATTAATTA
15032653 T
1 T
15032654 AATAATTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTAAATTAATTA
Found at i:15033227 original size:14 final size:15
Alignment explanation
Indices: 15033195--15033235 Score: 66
Period size: 14 Copynumber: 2.7 Consensus size: 15
15033185 TTTATTAACT
15033195 ATAATTAGTAATAATA
1 ATAATTA-TAATAATA
15033211 ATAATTATAAT-ATA
1 ATAATTATAATAATA
15033225 ATAATTATAAT
1 ATAATTATAAT
15033236 TTAACGATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
14 14 0.56
15 4 0.16
16 7 0.28
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
ATAATTATAATAATA
Found at i:15033548 original size:18 final size:19
Alignment explanation
Indices: 15033521--15033556 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
15033511 TAACTCTATT
15033521 ATTAATTATAATACTAAAC
1 ATTAATTATAATACTAAAC
*
15033540 ATTAA-TATAATATTAAA
1 ATTAATTATAATACTAAA
15033557 TTAGATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (19 bp):
ATTAATTATAATACTAAAC
Found at i:15033595 original size:23 final size:25
Alignment explanation
Indices: 15033542--15033603 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 25
15033532 TACTAAACAT
*
15033542 TAATATAATATTAAATTAGATTATAC
1 TAAT-TAATAATAAATTAGATTATAC
*
15033568 T-ATTAATAATACATTA-ATTATA-
1 TAATTAATAATAAATTAGATTATAC
*
15033590 TAATTAATACTAAA
1 TAATTAATAATAAA
15033604 CAAGATTCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 1 0.03
23 16 0.52
24 11 0.35
25 2 0.06
26 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (25 bp):
TAATTAATAATAAATTAGATTATAC
Found at i:15034957 original size:3 final size:3
Alignment explanation
Indices: 15034946--15034988 Score: 68
Period size: 3 Copynumber: 13.7 Consensus size: 3
15034936 AACAAAATAA
15034946 TAT TAAT TAT TAT TAT TAT TAT TAT TAT TATT TAT TAT TAT TA
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TA
15034989 ACAGTTTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
3 32 0.84
4 6 0.16
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:15035119 original size:25 final size:25
Alignment explanation
Indices: 15035071--15035145 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
15035061 AATTTATTAT
*
15035071 ATTAATATTTATAATATTACTAATA
1 ATTAATATTTATAATATTAATAATA
15035096 ATTAATATATTATAATA-TAATAATTA
1 ATTAATAT-TTATAATATTAATAA-TA
*
15035122 A--AATATTTTTATAATATTAGTAAT
1 ATTAATA--TTTATAATATTAATAAT
15035146 TTTGTTATCC
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
24 4 0.09
25 22 0.51
26 17 0.40
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (25 bp):
ATTAATATTTATAATATTAATAATA
Found at i:15036973 original size:14 final size:14
Alignment explanation
Indices: 15036956--15036982 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15036946 TCTATTTATA
15036956 TATTATATTTATTG
1 TATTATATTTATTG
15036970 TATTATATTTATT
1 TATTATATTTATT
15036983 AAATAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (14 bp):
TATTATATTTATTG
Found at i:15037017 original size:13 final size:14
Alignment explanation
Indices: 15036992--15037020 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15036982 TAAATAATTA
15036992 AAATTAATATTAAT
1 AAATTAATATTAAT
15037006 AAATTAAT-TTAAT
1 AAATTAATATTAAT
15037019 AA
1 AA
15037021 GAATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTAATATTAAT
Found at i:15037186 original size:14 final size:15
Alignment explanation
Indices: 15037155--15037196 Score: 59
Period size: 14 Copynumber: 2.8 Consensus size: 15
15037145 AAATATTTAA
*
15037155 TTTAATTAATTCATT
1 TTTAATTAATTAATT
15037170 TTTAATTAA-TAATT
1 TTTAATTAATTAATT
15037184 TTTAATTAGATTA
1 TTTAATTA-ATTA
15037197 TTTATTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 12 0.50
15 10 0.42
16 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTTAATTAATTAATT
Found at i:15037199 original size:15 final size:14
Alignment explanation
Indices: 15037155--15037199 Score: 63
Period size: 15 Copynumber: 3.1 Consensus size: 14
15037145 AAATATTTAA
15037155 TTTAATTAATTCATT
1 TTTAATTAATT-ATT
*
15037170 TTTAATTAATAATT
1 TTTAATTAATTATT
15037184 TTTAATTAGATTATT
1 TTTAATTA-ATTATT
15037199 T
1 T
15037200 ATTCAAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTAATTAATTATT
Found at i:15037404 original size:20 final size:20
Alignment explanation
Indices: 15037370--15037429 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 20
15037360 AATTTATCGT
15037370 TTATTATATCT-TATTAATAA
1 TTATTATAT-TATATTAATAA
*
15037390 TTATTATATTATATTAA-AC
1 TTATTATATTATATTAATAA
15037409 TTAATTAATAATTATATTAAT
1 TT-ATT-AT-ATTATATTAAT
15037430 TAATATAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 4 0.12
20 18 0.53
21 2 0.06
22 10 0.29
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATTATATTATATTAATAA
Found at i:15037417 original size:27 final size:25
Alignment explanation
Indices: 15037383--15037432 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
15037373 TTATATCTTA
*
15037383 TTAATAATTATTATATTATATTAAAC
1 TTAATAATAATTATATTA-ATTAAAC
15037409 TTAATTAATAATTATATTAATTAA
1 TTAA-TAATAATTATATTAATTAA
15037433 TATAATCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TTAATAATAATTATATTAATTAAAC
Found at i:15037438 original size:5 final size:4
Alignment explanation
Indices: 15037382--15037454 Score: 62
Period size: 4 Copynumber: 17.5 Consensus size: 4
15037372 ATTATATCTT
15037382 ATTA A-TA ATT- ATTA TATTA TATTAA ACTTA ATTA A-TA ATTA TATTA
1 ATTA ATTA ATTA ATTA -ATTA -ATT-A A-TTA ATTA ATTA ATTA -ATTA
*
15037428 ATTA ATATA ATCA ATTA ATTA ATTA AT
1 ATTA AT-TA ATTA ATTA ATTA ATTA AT
15037455 ATTAAATATT
Statistics
Matches: 59, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
3 9 0.15
4 28 0.47
5 19 0.32
6 3 0.05
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:15037448 original size:21 final size:21
Alignment explanation
Indices: 15037381--15037456 Score: 79
Period size: 21 Copynumber: 3.6 Consensus size: 21
15037371 TATTATATCT
*
15037381 TATTAA-TAAT-TATTATATTA
1 TATTAATTAATATAATA-ATTA
15037401 TATTAAACTTAAT-TAATAATTA
1 TATT-AA-TTAATATAATAATTA
15037423 TATTAATTAATATAATCAATTA
1 TATTAATTAATATAAT-AATTA
15037445 -ATTAATTAATAT
1 TATTAATTAATAT
15037457 TAAATATTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
20 9 0.18
21 20 0.40
22 13 0.26
23 8 0.16
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (21 bp):
TATTAATTAATATAATAATTA
Found at i:15037465 original size:21 final size:21
Alignment explanation
Indices: 15037419--15037491 Score: 55
Period size: 21 Copynumber: 3.4 Consensus size: 21
15037409 TTAATTAATA
15037419 ATTATATTAATTAATA-T-AAT
1 ATTA-ATTAATTAATATTAAAT
15037439 CAATTAATTAATTAATATTAAAT
1 --ATTAATTAATTAATATTAAAT
* *
15037462 ATTAAATAAATAGAATATTAAA-
1 ATT-AATTAAT-TAATATTAAAT
15037484 A-TAATTAA
1 ATTAATTAA
15037492 ATAGTATTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
20 5 0.11
21 15 0.34
22 12 0.27
23 12 0.27
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (21 bp):
ATTAATTAATTAATATTAAAT
Found at i:15037494 original size:16 final size:15
Alignment explanation
Indices: 15037455--15037494 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
15037445 ATTAATTAAT
15037455 ATTAAATATTAAATA
1 ATTAAATATTAAATA
*
15037470 AATAGAATATTAAAATA
1 ATTA-AATATT-AAATA
15037487 ATTAAATA
1 ATTAAATA
15037495 GTATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 3 0.14
16 10 0.48
17 8 0.38
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (15 bp):
ATTAAATATTAAATA
Found at i:15037687 original size:35 final size:31
Alignment explanation
Indices: 15037619--15037699 Score: 81
Period size: 35 Copynumber: 2.5 Consensus size: 31
15037609 AAAGCAGAGT
15037619 TTTAATTATTATAAGATTATATAATTAAATA
1 TTTAATTATTATAAGATTATATAATTAAATA
* **
15037650 TTTATTTATTATAAAGAATTGATAATAATTATTTA
1 TTTAATTATTAT-AAG-ATT-AT-ATAATTAAATA
*
15037685 TTTAAATTTTTATAA
1 TTT-AATTATTATAA
15037700 ACTTATACCT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 11 0.28
32 3 0.08
33 3 0.08
34 2 0.05
35 14 0.35
36 7 0.17
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (31 bp):
TTTAATTATTATAAGATTATATAATTAAATA
Found at i:15037843 original size:29 final size:29
Alignment explanation
Indices: 15037811--15037912 Score: 83
Period size: 29 Copynumber: 3.6 Consensus size: 29
15037801 TGGTAAGTAA
15037811 TGTATCTAT-TATTAATAATTTAATAATAT
1 TGTATCTATATATTAATAATTTAAT-ATAT
*
15037840 TGTAT-AATATATT-ATAATTATAAT-TAT
1 TGTATCTATATATTAATAATT-TAATATAT
*
15037867 AT-TATTTATATATTAATAAATATTAATATAT
1 -TGTATCTATATATTAAT-AAT-TTAATATAT
*
15037898 AGTA-CTAT-TATTAAT
1 TGTATCTATATATTAAT
15037913 GACTATAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
27 6 0.10
28 16 0.27
29 22 0.37
30 10 0.17
31 6 0.10
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.51
Consensus pattern (29 bp):
TGTATCTATATATTAATAATTTAATATAT
Found at i:15038382 original size:29 final size:28
Alignment explanation
Indices: 15038328--15038382 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
15038318 TATAATAATT
* *
15038328 ATAATAATATTATTATTATACTAATAAA
1 ATAATAATATTATTATAATACAAATAAA
15038356 ATAATAAATATTATTAATAAT-CAAATA
1 ATAAT-AATATTATT-ATAATACAAATA
15038383 TTATATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.22
29 14 0.61
30 4 0.17
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (28 bp):
ATAATAATATTATTATAATACAAATAAA
Found at i:15038383 original size:17 final size:16
Alignment explanation
Indices: 15038355--15038386 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
15038345 ATACTAATAA
15038355 AATAATAAATATTATT
1 AATAATAAATATTATT
15038371 AATAATCAAATATTAT
1 AATAAT-AAATATTAT
15038387 ATTATTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
AATAATAAATATTATT
Found at i:15039747 original size:16 final size:16
Alignment explanation
Indices: 15039681--15039748 Score: 54
Period size: 16 Copynumber: 4.4 Consensus size: 16
15039671 TTTATATATA
15039681 ATAATAATTA-TTAAT
1 ATAATAATTATTTAAT
*
15039696 ATTAAT-ATTATTTATT
1 A-TAATAATTATTTAAT
**
15039712 A-AATAAAGAATTTAAT
1 ATAAT-AATTATTTAAT
*
15039728 -TAATAATTATCTAAT
1 ATAATAATTATTTAAT
15039743 ATAATA
1 ATAATA
15039749 TAATTTTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 11
0.69 0.12 0.19
Matches are distributed among these distances:
14 3 0.08
15 13 0.32
16 24 0.60
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (16 bp):
ATAATAATTATTTAAT
Found at i:15039796 original size:27 final size:28
Alignment explanation
Indices: 15039750--15039817 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 28
15039740 AATATAATAT
*
15039750 AATT-TTATT-AATTATATTA-TACTTA
1 AATTATTATTAAATAATATTATTACTTA
*
15039775 AATTATTATTAAATAATATTATTATTTA
1 AATTATTATTAAATAATATTATTACTTA
*
15039803 AATTAAT-TTAAATAA
1 AATTATTATTAAATAA
15039818 AGATTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 4 0.11
26 5 0.14
27 17 0.46
28 11 0.30
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (28 bp):
AATTATTATTAAATAATATTATTACTTA
Found at i:15040027 original size:10 final size:10
Alignment explanation
Indices: 15040014--15040043 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
15040004 ATAATTTAAC
15040014 AATTATAATT
1 AATTATAATT
15040024 AATTATAATT
1 AATTATAATT
15040034 -ATTATAATT
1 AATTATAATT
15040043 A
1 A
15040044 TTCATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
AATTATAATT
Found at i:15040035 original size:16 final size:17
Alignment explanation
Indices: 15040014--15040092 Score: 51
Period size: 16 Copynumber: 4.6 Consensus size: 17
15040004 ATAATTTAAC
15040014 AATTATAATTAATTA-T
1 AATTATAATTAATTATT
*
15040030 AATTATTA-TAATTATT
1 AATTATAATTAATTATT
15040046 CATATATATAATTAGATTA-T
1 -A-AT-TATAATTA-ATTATT
15040066 -A-TATATATTAAATTATT
1 AATTATA-ATT-AATTATT
*
15040083 AATAATAATT
1 AATTATAATT
15040093 TTTAATATTA
Statistics
Matches: 49, Mismatches: 3, Indels: 20
0.68 0.04 0.28
Matches are distributed among these distances:
15 10 0.20
16 15 0.31
17 4 0.08
18 6 0.12
19 7 0.14
20 3 0.06
21 4 0.08
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (17 bp):
AATTATAATTAATTATT
Found at i:15040037 original size:19 final size:19
Alignment explanation
Indices: 15040015--15040080 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
15040005 TAATTTAACA
15040015 ATTATAATTAATTATAATT
1 ATTATAATTAATTATAATT
15040034 ATTATAATT-ATTCAT-A-T
1 ATTATAATTAATT-ATAATT
15040051 A-TATAATTAGATTATATATAT
1 ATTATAATTA-ATTATA-AT-T
15040072 ATTA-AATTA
1 ATTATAATTA
15040081 TTAATAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
16 7 0.18
17 4 0.10
18 7 0.18
19 12 0.31
21 7 0.18
22 2 0.05
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTATAATTAATTATAATT
Found at i:15040126 original size:18 final size:18
Alignment explanation
Indices: 15040073--15040132 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
15040063 TATATATATA
15040073 TTAAATTATTAATAATAATT
1 TTAAATTATT-ATAATAA-T
* *
15040093 TTTAA-TATTATTATAAT
1 TTAAATTATTATAATAAT
*
15040110 TTAAATTAATATAATAA-
1 TTAAATTATTATAATAAT
15040127 TTAAAT
1 TTAAAT
15040133 CCTAAATTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
17 11 0.32
18 15 0.44
19 4 0.12
20 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAAATTATTATAATAAT
Found at i:15040384 original size:16 final size:16
Alignment explanation
Indices: 15040363--15040394 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
15040353 AATTATATTC
15040363 TTATAATAAATTATAA
1 TTATAATAAATTATAA
*
15040379 TTATAATAATTTATAA
1 TTATAATAAATTATAA
15040395 GATTTATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTATAATAAATTATAA
Found at i:15040500 original size:27 final size:28
Alignment explanation
Indices: 15040449--15040549 Score: 72
Period size: 28 Copynumber: 3.8 Consensus size: 28
15040439 TTTTTATTAA
*
15040449 ATATATAATTTAATATATTTATAAA-TT
1 ATATATAATTTAATATATATATAAATTT
15040476 ATATATAACTTTAA-ATA-ATATTAAATTT
1 ATATATAA-TTTAATATATATA-TAAATTT
* **
15040504 ATTTATAAACCTAATAT-T-TAT-AATTT
1 ATATAT-AATTTAATATATATATAAATTT
* *
15040530 ATAAATAAATTAATA-ATATA
1 ATATATAATTTAATATATATA
15040550 ATAATTATTA
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
25 8 0.14
26 13 0.22
27 16 0.28
28 17 0.29
29 4 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (28 bp):
ATATATAATTTAATATATATATAAATTT
Found at i:15040537 original size:26 final size:24
Alignment explanation
Indices: 15040491--15040538 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
15040481 TAACTTTAAA
**
15040491 TAATATTAAATTTATTTATAAACC
1 TAATATTAAATTTATAAATAAACC
15040515 TAATATTTATAATTTATAAATAAA
1 TAATA-TTA-AATTTATAAATAAA
15040539 TTAATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 5 0.25
25 3 0.15
26 12 0.60
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (24 bp):
TAATATTAAATTTATAAATAAACC
Found at i:15040603 original size:66 final size:65
Alignment explanation
Indices: 15040533--15040700 Score: 146
Period size: 69 Copynumber: 2.5 Consensus size: 65
15040523 ATAATTTATA
* * *
15040533 AATAAATTAATAATATAATAATTATTATTAT-ATT-TCATTATTTAATTATAATATAAATAAATA
1 AATAAATTAATAATATAATAATTATTATAATAATTATAATAATTTAATTATAATAT-AAT-AATA
15040596 ATT
64 A-T
* * * *
15040599 AAT-AATATAACTTTATATTATAAATTATTATAATAATTATAATAATTTATTTATAATATAATAT
1 AATAAAT-TAA--TAATATAAT-AATTATTATAATAATTATAATAATTTAATTATAATATAATAA
15040663 TAAT
62 TAAT
* * *
15040667 AATAATACTAATAATTTAATAAATATTA-AATAAT
1 AATAA-ATTAATAATATAATAATTATTATAATAAT
15040701 AAGATAAATT
Statistics
Matches: 82, Mismatches: 12, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
65 9 0.11
66 13 0.16
67 6 0.07
68 11 0.13
69 19 0.23
70 7 0.09
71 17 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (65 bp):
AATAAATTAATAATATAATAATTATTATAATAATTATAATAATTTAATTATAATATAATAATAAT
Found at i:15040619 original size:38 final size:36
Alignment explanation
Indices: 15040572--15040699 Score: 103
Period size: 37 Copynumber: 3.6 Consensus size: 36
15040562 ATATTTCATT
15040572 ATTTA-ATTATAATATAAATAAATAATTAATAATATA
1 ATTTATATTATAATATAAATAAATAATTAATAA-ATA
* *
15040608 ACTTTATATTATAA-ATTATTATAATAATT-AT-AATA
1 A-TTTATATTATAATATAAATA-AATAATTAATAAATA
*
15040643 ATTTAT-TTATAATATAATATTAATAA-TAATACTAATA
1 ATTTATATTATAATATAA-ATAAATAATTAATA--AATA
15040680 ATTTA-A-TA-AATATTAAATAA
1 ATTTATATTATAATA-TAAATAA
15040700 TAAGATAAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 23
0.72 0.06 0.22
Matches are distributed among these distances:
33 7 0.09
34 15 0.20
35 12 0.16
36 7 0.09
37 20 0.27
38 14 0.19
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (36 bp):
ATTTATATTATAATATAAATAAATAATTAATAAATA
Found at i:15040639 original size:9 final size:9
Alignment explanation
Indices: 15040615--15040688 Score: 57
Period size: 9 Copynumber: 8.1 Consensus size: 9
15040605 ATAACTTTAT
*
15040615 ATTATAAATT
1 ATTAT-AATA
15040625 ATTATAATA
1 ATTATAATA
15040634 ATTATAATA
1 ATTATAATA
*
15040643 ATTTATTTATA
1 A-TTA-TAATA
15040654 A-TATAAT-
1 ATTATAATA
15040661 ATTAATAATA
1 ATT-ATAATA
15040671 A-TACTAATA
1 ATTA-TAATA
15040680 ATT-TAATA
1 ATTATAATA
15040688 A
1 A
15040689 ATATTAAATA
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
7 1 0.02
8 11 0.20
9 27 0.50
10 10 0.19
11 5 0.09
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (9 bp):
ATTATAATA
Found at i:15040669 original size:37 final size:37
Alignment explanation
Indices: 15040572--15040684 Score: 114
Period size: 37 Copynumber: 3.1 Consensus size: 37
15040562 ATATTTCATT
* * *
15040572 ATTTAATTATAATATAA-ATAAATAATTAATAAT-ATA
1 ATTTATTTATAATATAATATTAATAA-TAATTATAATA
15040608 ACTTTATATTATAA-AT--TATT-ATAATAATTATAATA
1 A-TTTAT-TTATAATATAATATTAATAATAATTATAATA
15040643 ATTTATTTATAATATAATATTAATAATAA-TACTAATA
1 ATTTATTTATAATATAATATTAATAATAATTA-TAATA
15040680 ATTTA
1 ATTTA
15040685 ATAAATATTA
Statistics
Matches: 65, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
33 6 0.09
34 13 0.20
35 8 0.12
36 9 0.14
37 23 0.35
38 6 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (37 bp):
ATTTATTTATAATATAATATTAATAATAATTATAATA
Found at i:15041377 original size:21 final size:22
Alignment explanation
Indices: 15041343--15041383 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
15041333 TTAATCAATT
* *
15041343 ATATATAATTATAATTAATAAA
1 ATATATAATAATAACTAATAAA
15041365 ATAT-TAATAATAACTAATA
1 ATATATAATAATAACTAATA
15041384 GTCTAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATATAATAATAACTAATAAA
Found at i:15042113 original size:12 final size:12
Alignment explanation
Indices: 15042096--15042120 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15042086 ATCTATTCAT
15042096 ATTTAAATAATA
1 ATTTAAATAATA
15042108 ATTTAAATAATA
1 ATTTAAATAATA
15042120 A
1 A
15042121 AACAATTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTTAAATAATA
Found at i:15042575 original size:15 final size:15
Alignment explanation
Indices: 15042536--15042579 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15042526 GTAATAATTT
* *
15042536 TAATTAATATTTTAT
1 TAATTAATATTTAAA
*
15042551 TATTTAAATATTTAAA
1 TAATT-AATATTTAAA
15042567 TAATTAATATTTA
1 TAATTAATATTTA
15042580 TACTATAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TAATTAATATTTAAA
Found at i:15042577 original size:23 final size:23
Alignment explanation
Indices: 15042551--15042630 Score: 58
Period size: 23 Copynumber: 3.3 Consensus size: 23
15042541 AATATTTTAT
15042551 TATTTAAATATTTAAATAATTAA
1 TATTTAAATATTTAAATAATTAA
*
15042574 TATTTATACTATAATATAAA-ATATTAA
1 TATTTA-A--AT-ATTTAAATA-ATTAA
15042601 TTATGTTAAATATTT--ATAATTAA
1 -TAT-TTAAATATTTAAATAATTAA
*
15042624 TAATTAA
1 TATTTAA
15042631 TTGTTAATTA
Statistics
Matches: 46, Mismatches: 3, Indels: 18
0.69 0.04 0.27
Matches are distributed among these distances:
21 4 0.09
22 2 0.04
23 12 0.26
24 2 0.04
25 3 0.07
26 5 0.11
27 11 0.24
28 4 0.09
29 3 0.07
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (23 bp):
TATTTAAATATTTAAATAATTAA
Found at i:15042953 original size:18 final size:18
Alignment explanation
Indices: 15042919--15042958 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15042909 AATCTTTAGA
*
15042919 ATTAATAATCATTTTATC
1 ATTAATAATCATATTATC
* *
15042937 ATTAATAATGATATTATT
1 ATTAATAATCATATTATC
15042955 ATTA
1 ATTA
15042959 TTATTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (18 bp):
ATTAATAATCATATTATC
Found at i:15042954 original size:3 final size:3
Alignment explanation
Indices: 15042948--15042978 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
15042938 TTAATAATGA
15042948 TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
15042979 AATATTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:15043129 original size:23 final size:23
Alignment explanation
Indices: 15043086--15043130 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
15043076 TTTGTTATTA
15043086 TTAACATTAAATATTATTAAATT
1 TTAACATTAAATATTATTAAATT
15043109 TTAA-ATTATAAT-TTATATAAAT
1 TTAACATTA-AATATTAT-TAAAT
15043131 GGAATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAACATTAAATATTATTAAATT
Found at i:15043166 original size:10 final size:10
Alignment explanation
Indices: 15043135--15043181 Score: 60
Period size: 10 Copynumber: 4.7 Consensus size: 10
15043125 ATAAATGGAA
15043135 TTATATAAAT
1 TTATATAAAT
* *
15043145 TGATTTAAAT
1 TTATATAAAT
15043155 TTATATAAAT
1 TTATATAAAT
15043165 TTA-ATAATAT
1 TTATATAA-AT
15043175 TTATATA
1 TTATATA
15043182 TTGTTTTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
9 4 0.13
10 24 0.77
11 3 0.10
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
TTATATAAAT
Found at i:15043428 original size:23 final size:24
Alignment explanation
Indices: 15043402--15043461 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 24
15043392 TTTAAATATT
15043402 AAATTATATTTATTTCA-AATTAA
1 AAATTATATTTATTTCACAATTAA
* * *
15043425 AAATAATATTTATTTGACAATTCA
1 AAATTATATTTATTTCACAATTAA
15043449 AAATTA-ATTTATT
1 AAATTATATTTATT
15043462 GATAAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 22 0.69
24 10 0.31
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (24 bp):
AAATTATATTTATTTCACAATTAA
Found at i:15045171 original size:33 final size:29
Alignment explanation
Indices: 15045112--15045174 Score: 81
Period size: 33 Copynumber: 2.0 Consensus size: 29
15045102 TTTAATTAAT
15045112 TAGTTATATTAATATAATATAATTTATAA
1 TAGTTATATTAATATAATATAATTTATAA
*
15045141 TAGTTATTATTAGTATATGAATATATTTTATAA
1 TAGTTA-TATTA--ATAT-AATATAATTTATAA
15045174 T
1 T
15045175 CAATAGTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.21
30 5 0.17
32 4 0.14
33 14 0.48
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (29 bp):
TAGTTATATTAATATAATATAATTTATAA
Found at i:15045981 original size:29 final size:28
Alignment explanation
Indices: 15045927--15045992 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
15045917 GTTATATCAG
15045927 ATTATTAATACATTAAATTATAATAAGT
1 ATTATTAATACATTAAATTATAATAAGT
*
15045955 ATTATTAAATAC-TT-AATTATATTATAATT
1 ATTATT-AATACATTAAATTATA--ATAAGT
15045984 ATTA-TAATA
1 ATTATTAATA
15045993 TTATTTTATC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
27 11 0.32
28 9 0.26
29 14 0.41
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (28 bp):
ATTATTAATACATTAAATTATAATAAGT
Found at i:15045997 original size:20 final size:19
Alignment explanation
Indices: 15045938--15045997 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
15045928 TTATTAATAC
*
15045938 ATTAAATTATAATAAGTATT
1 ATTAAATTATTATAA-TATT
*
15045958 ATTAAA-TACT-TAAT-TAT
1 ATTAAATTATTATAATAT-T
15045975 ATTATAATTATTATAATATT
1 ATTA-AATTATTATAATATT
15045995 ATT
1 ATT
15045998 TTATCTAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
16 1 0.03
17 6 0.19
18 5 0.16
19 5 0.16
20 14 0.44
21 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
ATTAAATTATTATAATATT
Found at i:15046852 original size:23 final size:21
Alignment explanation
Indices: 15046838--15046880 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
15046828 TTAAATATTA
*
15046838 AATAATTAATAATTTCAAAAATT
1 AATAACTAA-AATTT-AAAAATT
15046861 AATAACTAAAAGTTTAAAAA
1 AATAACTAAAA-TTTAAAAA
15046881 ATGAATATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.33
Consensus pattern (21 bp):
AATAACTAAAATTTAAAAATT
Found at i:15047115 original size:25 final size:25
Alignment explanation
Indices: 15047043--15047116 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
15047033 TAATTGTATA
15047043 ATAT-TTATAT-ATATTATT-ATAT
1 ATATATTATATAATATTATTAATAT
* ** *
15047065 ATA-ATAAT-TAATAACATCCAAT-T
1 ATATATTATATAATATTAT-TAATAT
15047088 ATATATTATATAATATTATTAATAT
1 ATATATTATATAATATTATTAATAT
15047113 ATAT
1 ATAT
15047117 TAATTAAATT
Statistics
Matches: 37, Mismatches: 8, Indels: 11
0.66 0.14 0.20
Matches are distributed among these distances:
21 1 0.03
22 11 0.30
23 4 0.11
24 9 0.24
25 12 0.32
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (25 bp):
ATATATTATATAATATTATTAATAT
Found at i:15047122 original size:14 final size:14
Alignment explanation
Indices: 15047044--15047132 Score: 51
Period size: 14 Copynumber: 6.1 Consensus size: 14
15047034 AATTGTATAA
*
15047044 TATTTATAT-ATAT
1 TATTAATATAATAT
15047057 TATTATATATAATAAT
1 TATTA-ATATAAT-AT
* *
15047073 TAATAACATCCAATTAT
1 TATTAATAT--AA-TAT
15047090 ATATT-ATATAATAT
1 -TATTAATATAATAT
15047104 TATTAATAT-ATAT
1 TATTAATATAATAT
15047117 TAATTAA-ATTAATAT
1 T-ATTAATA-TAATAT
15047132 T
1 T
15047133 TAATTTATTA
Statistics
Matches: 60, Mismatches: 5, Indels: 20
0.71 0.06 0.24
Matches are distributed among these distances:
13 14 0.23
14 17 0.28
15 12 0.20
16 6 0.10
17 7 0.12
18 4 0.07
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (14 bp):
TATTAATATAATAT
Found at i:15047250 original size:22 final size:22
Alignment explanation
Indices: 15047216--15047293 Score: 90
Period size: 22 Copynumber: 3.5 Consensus size: 22
15047206 ATTAAATATT
*
15047216 TAATTACTAATAAGTTGTTATA
1 TAATTACTAATAAGTTATTATA
15047238 GTAATTA-TAATAAGTTATTATA
1 -TAATTACTAATAAGTTATTATA
15047260 TTTAATTACTAATCAA-TTATTATA
1 --TAATTACTAAT-AAGTTATTATA
15047284 TAATTA-TAAT
1 TAATTACTAAT
15047294 TATATAATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
21 4 0.08
22 20 0.40
23 12 0.24
24 12 0.24
25 2 0.04
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (22 bp):
TAATTACTAATAAGTTATTATA
Found at i:15047660 original size:17 final size:17
Alignment explanation
Indices: 15047621--15047672 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
15047611 TAATAGTAAT
* *
15047621 ATTAGTTAATATAATTATT
1 ATTATTTAATAT--TTATG
15047640 ATTATTTAATATTTATG
1 ATTATTTAATATTTATG
*
15047657 ATTATATAATATTTAT
1 ATTATTTAATATTTAT
15047673 TATATTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
17 19 0.63
19 11 0.37
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (17 bp):
ATTATTTAATATTTATG
Found at i:15048889 original size:22 final size:22
Alignment explanation
Indices: 15048863--15048907 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
15048853 TATGAGTGGA
**
15048863 AATATAGATTATCTATATTTAT
1 AATATAGATTATAAATATTTAT
*
15048885 AATATAGTTTATAAATATTTAT
1 AATATAGATTATAAATATTTAT
15048907 A
1 A
15048908 TTTTAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
AATATAGATTATAAATATTTAT
Found at i:15048924 original size:23 final size:22
Alignment explanation
Indices: 15048894--15048957 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
15048884 TAATATAGTT
15048894 TATAAATATTTATATTTTAATAA
1 TATAAATA-TTATATTTTAATAA
* *
15048917 TATAAATA-AATATTATTAA-AT
1 TATAAATATTATATT-TTAATAA
15048938 TA-AAATATTATATTTTAATA
1 TATAAATATTATATTTTAATA
15048958 TTGTTAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
20 9 0.26
21 14 0.40
22 4 0.11
23 8 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TATAAATATTATATTTTAATAA
Found at i:15049105 original size:21 final size:21
Alignment explanation
Indices: 15049081--15049166 Score: 72
Period size: 21 Copynumber: 4.1 Consensus size: 21
15049071 AATACCTTAT
*
15049081 TAATAAATATAATTAATAATA
1 TAATTAATATAATTAATAATA
*
15049102 TAATT-ATTTAATTAAATAATA
1 TAATTAATATAATT-AATAATA
* *
15049123 -AATTAATAATAGTGAA-AA-A
1 TAATTAAT-ATAATTAATAATA
15049142 GTAATTAATATTAATTAATAATA
1 -TAATTAATA-TAATTAATAATA
15049165 TA
1 TA
15049167 TATTCATAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 15
0.69 0.10 0.21
Matches are distributed among these distances:
19 1 0.02
20 14 0.28
21 27 0.54
22 7 0.14
23 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
TAATTAATATAATTAATAATA
Found at i:15049783 original size:13 final size:13
Alignment explanation
Indices: 15049721--15049798 Score: 63
Period size: 13 Copynumber: 5.8 Consensus size: 13
15049711 TAATTAAGTT
15049721 ATATAATTATATA
1 ATATAATTATATA
15049734 ATATAATTA-AGTAA
1 ATATAATTATA-T-A
15049748 ACTAATAATTAT-TA
1 A-T-ATAATTATATA
* *
15049762 GTTTAAATTATATA
1 ATAT-AATTATATA
*
15049776 ATATAATT-TAAA
1 ATATAATTATATA
15049788 ATATAATTATA
1 ATATAATTATA
15049799 ACTTAATTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
12 13 0.25
13 23 0.44
14 7 0.13
15 2 0.04
16 7 0.13
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.44
Consensus pattern (13 bp):
ATATAATTATATA
Found at i:15050405 original size:15 final size:15
Alignment explanation
Indices: 15050387--15050420 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15050377 TTTATTTTTG
15050387 ATTATTATATTAT-AA
1 ATTATT-TATTATCAA
15050402 ATTATTTATTATCAA
1 ATTATTTATTATCAA
15050417 ATTA
1 ATTA
15050421 AACAAGGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTATTTATTATCAA
Found at i:15050535 original size:13 final size:13
Alignment explanation
Indices: 15050477--15050532 Score: 67
Period size: 13 Copynumber: 4.2 Consensus size: 13
15050467 ACTTATTTAT
15050477 ATAATTAATTAAA
1 ATAATTAATTAAA
*
15050490 ATAATTAATTATA
1 ATAATTAATTAAA
*
15050503 ATAATTTAATATAAT
1 ATAA-TTAAT-TAAA
*
15050518 ATTATTAATTAAA
1 ATAATTAATTAAA
15050531 AT
1 AT
15050533 TATAAAATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 21 0.58
14 10 0.28
15 5 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
ATAATTAATTAAA
Found at i:15051702 original size:20 final size:21
Alignment explanation
Indices: 15051650--15051707 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
15051640 CTAGTATCAT
* *
15051650 TATAAAATTAATAT-TTTATA
1 TATAATATTAATATATTAATA
* *
15051670 TGTAATATAAATATATTAATA
1 TATAATATTAATATATTAATA
15051691 TATAAT-TTAATATATTA
1 TATAATATTAATATATTA
15051708 TATTTATTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 21 0.68
21 10 0.32
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
TATAATATTAATATATTAATA
Found at i:15051712 original size:14 final size:13
Alignment explanation
Indices: 15051666--15051713 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
15051656 ATTAATATTT
*
15051666 TATATGTAATATA
1 TATATTTAATATA
*
15051679 AATATATTAATATA
1 TATAT-TTAATATA
15051693 TA-ATTTAATATA
1 TATATTTAATATA
15051705 TTATATTTA
1 -TATATTTA
15051714 TTAATAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 8 0.28
13 8 0.28
14 13 0.45
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
TATATTTAATATA
Found at i:15051725 original size:16 final size:17
Alignment explanation
Indices: 15051697--15051731 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
15051687 AATATATAAT
*
15051697 TTAATATATTATATTTA
1 TTAATATATTATAATTA
15051714 TTAATA-ATTATAATTA
1 TTAATATATTATAATTA
15051730 TT
1 TT
15051732 TGATTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAATATATTATAATTA
Found at i:15051727 original size:26 final size:26
Alignment explanation
Indices: 15051692--15051765 Score: 68
Period size: 25 Copynumber: 2.9 Consensus size: 26
15051682 ATATTAATAT
15051692 ATAATT-TAATATATTATATTTATTA
1 ATAATTATAATATATTATATTTATTA
15051717 ATAATTATAAT-TATT-TGA-TT-TTA
1 ATAATTATAATATATTAT-ATTTATTA
* *
15051740 ATAATGATTATTAGTATTATATTTAT
1 ATAATTA-TAATA-TATTATATTTAT
15051766 ATTATAATAC
Statistics
Matches: 39, Mismatches: 2, Indels: 13
0.72 0.04 0.24
Matches are distributed among these distances:
23 9 0.23
24 6 0.15
25 11 0.28
26 9 0.23
27 3 0.08
28 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (26 bp):
ATAATTATAATATATTATATTTATTA
Found at i:15051875 original size:18 final size:21
Alignment explanation
Indices: 15051838--15051876 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
15051828 ATAGTTAATC
15051838 AAATAATTATATTGATAATTA
1 AAATAATTATATTGATAATTA
15051859 AAAT-ATTATA-T-ATAATTA
1 AAATAATTATATTGATAATTA
15051877 TTAACTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 1 0.06
20 6 0.33
21 4 0.22
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (21 bp):
AAATAATTATATTGATAATTA
Found at i:15051879 original size:21 final size:21
Alignment explanation
Indices: 15051838--15051880 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
15051828 ATAGTTAATC
*
15051838 AAATAATTATATTGATAATTA
1 AAATAATTATATTAATAATTA
*
15051859 AAAT-ATTATATATAATTATTA
1 AAATAATTATAT-TAATAATTA
15051880 A
1 A
15051881 CTCTTTAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AAATAATTATATTAATAATTA
Found at i:15051923 original size:15 final size:15
Alignment explanation
Indices: 15051903--15051940 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
15051893 ATGTATAAAT
15051903 TATTATTAATTAATA
1 TATTATTAATTAATA
*
15051918 TATTATAAATTAATA
1 TATTATTAATTAATA
*
15051933 TTTTATTA
1 TATTATTA
15051941 GTAAGTTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTATTAATTAATA
Found at i:15052070 original size:21 final size:20
Alignment explanation
Indices: 15051976--15052062 Score: 57
Period size: 21 Copynumber: 4.1 Consensus size: 20
15051966 TAATACAAAA
*
15051976 TATTTATATTTATATTTATTAA
1 TATTTATATTTATA-TTATT-T
** * *
15051998 TATCAATATTAATATTATAAT
1 TATTTATATTTATATTAT-TT
* * *
15052019 TAATTAGATTAATATTATTT
1 TATTTATATTTATATTATTT
15052039 TATTTGATATTTATATTAATTT
1 TATTT-ATATTTATATT-ATTT
15052061 TA
1 TA
15052063 GTTTTATTAT
Statistics
Matches: 49, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
20 5 0.10
21 27 0.55
22 17 0.35
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.57
Consensus pattern (20 bp):
TATTTATATTTATATTATTT
Found at i:15052391 original size:27 final size:27
Alignment explanation
Indices: 15052361--15052426 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
15052351 AACAATTAAA
15052361 TTTATATATAATTATTTGAA-TATTGAT
1 TTTATAT-TAATTATTTGAATTATTGAT
* *
15052388 TTTA-ATTTAAATATTTTAATTATTGAT
1 TTTATA-TTAATTATTTGAATTATTGAT
15052415 TTT-TATTAATTA
1 TTTATATTAATTA
15052427 ATAGATATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
26 17 0.52
27 16 0.48
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (27 bp):
TTTATATTAATTATTTGAATTATTGAT
Found at i:15053896 original size:26 final size:24
Alignment explanation
Indices: 15053867--15053934 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 24
15053857 TAATTAAACT
15053867 TTAATTAAATATAAATTAAATAATAG
1 TTAATTAAATATAAATTAAAT-A-AG
* * * *
15053893 TTAATTAGATATTAGTTTAATAAG
1 TTAATTAAATATAAATTAAATAAG
*
15053917 TTAATTAATTATATAATT
1 TTAATTAAATATA-AATT
15053935 GTTATTAATT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
24 12 0.36
25 4 0.12
26 17 0.52
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
TTAATTAAATATAAATTAAATAAG
Found at i:15054405 original size:15 final size:16
Alignment explanation
Indices: 15054380--15054419 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
15054370 TATATTTTTG
15054380 TTAATTCAATTTAATA-
1 TTAATT-AATTTAATAT
15054396 TTAATTAA-TTAATAT
1 TTAATTAATTTAATAT
15054411 TTAATTAAT
1 TTAATTAAT
15054420 AAACAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 10 0.45
16 6 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATTAATTTAATAT
Found at i:15054649 original size:13 final size:14
Alignment explanation
Indices: 15054627--15054674 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
15054617 ATTTTGATAT
15054627 ATAATAATT-AATA
1 ATAATAATTAAATA
*
15054640 ATATTAATTAATATA
1 ATAATAATTAA-ATA
*
15054655 ATAGTAATTAATATA
1 ATAATAATTAA-ATA
15054670 ATAAT
1 ATAAT
15054675 TCAATAGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 8 0.27
14 1 0.03
15 21 0.70
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (14 bp):
ATAATAATTAAATA
Found at i:15054655 original size:15 final size:15
Alignment explanation
Indices: 15054637--15054672 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
15054627 ATAATAATTA
*
15054637 ATAATATTAATTAAT
1 ATAATAGTAATTAAT
15054652 ATAATAGTAATTAAT
1 ATAATAGTAATTAAT
15054667 ATAATA
1 ATAATA
15054673 ATTCAATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAATAGTAATTAAT
Found at i:15054680 original size:28 final size:27
Alignment explanation
Indices: 15054623--15054680 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
15054613 TTTTATTTTG
*
15054623 ATATATAATAATTAATAATATTAATTA
1 ATATATAATAATTAATAATAATAATTA
*
15054650 ATATAATAGTAATTAAT-ATAATAATTCA
1 ATAT-ATAATAATTAATAATAATAATT-A
15054678 ATA
1 ATA
15054681 GTAAAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (27 bp):
ATATATAATAATTAATAATAATAATTA
Found at i:15054799 original size:17 final size:17
Alignment explanation
Indices: 15054752--15054805 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
15054742 TTAATATAAT
*
15054752 AATATATAATCATTA-A
1 AATATATAATAATTATA
*
15054768 TAATTTCATAA-AATTATA
1 -AATAT-ATAATAATTATA
15054786 AATATATAATAATTATA
1 AATATATAATAATTATA
15054803 AAT
1 AAT
15054806 TATTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.13
17 22 0.71
18 5 0.16
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (17 bp):
AATATATAATAATTATA
Found at i:15054842 original size:11 final size:11
Alignment explanation
Indices: 15054826--15054861 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
15054816 ATTTGAATCT
15054826 TTAATTAATTA
1 TTAATTAATTA
*
15054837 TTAATTGATTA
1 TTAATTAATTA
*
15054848 TTAAGTAATTA
1 TTAATTAATTA
15054859 TTA
1 TTA
15054862 TACTCAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (11 bp):
TTAATTAATTA
Found at i:15055983 original size:9 final size:8
Alignment explanation
Indices: 15055942--15056027 Score: 56
Period size: 9 Copynumber: 10.9 Consensus size: 8
15055932 AACTACTAAT
15055942 TAATATTA
1 TAATATTA
*
15055950 TCACTATT-
1 T-AATATTA
15055958 TAAT-TTA
1 TAATATTA
*
15055965 TTATA-T-
1 TAATATTA
15055971 TAATATTTA
1 TAATA-TTA
15055980 TAATATTA
1 TAATATTA
*
15055988 CTAATAAT-
1 -TAATATTA
15055996 TAATATTA
1 TAATATTA
* *
15056004 TTATAATA
1 TAATATTA
15056012 TAATAATTA
1 TAAT-ATTA
15056021 TAATATT
1 TAATATT
15056028 TTTATAATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
6 6 0.10
7 12 0.20
8 18 0.31
9 23 0.39
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.51
Consensus pattern (8 bp):
TAATATTA
Found at i:15056001 original size:16 final size:16
Alignment explanation
Indices: 15055978--15056025 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
15055968 TATTAATATT
15055978 TATAATATTACTAATAA
1 TATAATATTA-TAATAA
*
15055995 T-TAATATTATTATAA
1 TATAATATTATAATAA
15056010 TATAATAATTATAATA
1 TATAAT-ATTATAATA
15056026 TTTTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 12 0.44
17 9 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TATAATATTATAATAA
Found at i:15056012 original size:11 final size:11
Alignment explanation
Indices: 15055996--15056044 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
15055986 TACTAATAAT
15055996 TAATATTATTA
1 TAATATTATTA
15056007 TAATATAATAATTA
1 TAATAT--T-ATTA
*
15056021 TAATATTTTTA
1 TAATATTATTA
*
15056032 TAATATTAATA
1 TAATATTATTA
15056043 TA
1 TA
15056045 TAAATATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
11 20 0.62
12 1 0.03
13 1 0.03
14 10 0.31
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
TAATATTATTA
Done.