Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 83 of 129
Found at i:15056050 original size:25 final size:25
Alignment explanation
Indices: 15055976--15056051 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
15055966 TATATTAATA
* *
15055976 TTTATAATATTACTAATAATTAATATT
1 TTTATAATATTAAT-AT-ATAAATATT
*
15056003 ATTATAATA-TAATA-ATTATAATATT
1 TTTATAATATTAATATA-TA-AATATT
15056028 TTTATAATATTAATATATAAATAT
1 TTTATAATATTAATATATAAATAT
15056052 ATTTCTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 20 0.49
26 10 0.24
27 9 0.22
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (25 bp):
TTTATAATATTAATATATAAATATT
Found at i:15056357 original size:14 final size:13
Alignment explanation
Indices: 15056317--15056358 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
15056307 ATAACTATTT
15056317 CAATAGTTATAATAA
1 CAATA-TTAT-ATAA
15056332 -AATATTATATAA
1 CAATATTATATAA
15056344 CAATATTAATATAA
1 CAATATT-ATATAA
15056358 C
1 C
15056359 TATTAAAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.16
13 10 0.40
14 11 0.44
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (13 bp):
CAATATTATATAA
Found at i:15056411 original size:6 final size:6
Alignment explanation
Indices: 15056388--15056479 Score: 50
Period size: 6 Copynumber: 15.0 Consensus size: 6
15056378 ATTATTAAAT
*
15056388 ATTATA AATATAA TATTATA A-T-TA ATTATA ATTATA ATTATA ACTTAT-
1 ATTATA ATTAT-A -ATTATA ATTATA ATTATA ATTATA ATTATA A-TTATA
* * *
15056436 -TTATA AGTTA-A TATTATA AATATTA GTTATA ATATTTA ATTATA
1 ATTATA A-TTATA -ATTATA ATTA-TA ATTATA AT-TATA ATTATA
15056480 TTAATTTATT
Statistics
Matches: 66, Mismatches: 8, Indels: 24
0.67 0.08 0.24
Matches are distributed among these distances:
4 7 0.11
5 2 0.03
6 33 0.50
7 20 0.30
8 4 0.06
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (6 bp):
ATTATA
Found at i:15056415 original size:24 final size:25
Alignment explanation
Indices: 15056388--15056454 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 25
15056378 ATTATTAAAT
15056388 ATTATAAATATAATATTATAA-TTA
1 ATTATAAATATAATATTATAACTTA
*
15056412 ATTATAATTAT-A-ATTATAACTTA
1 ATTATAAATATAATATTATAACTTA
* *
15056435 TTTATAAGT-TAATATTATAA
1 ATTATAAATATAATATTATAA
15056455 ATATTAGTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
22 8 0.22
23 12 0.32
24 17 0.46
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (25 bp):
ATTATAAATATAATATTATAACTTA
Found at i:15056575 original size:30 final size:29
Alignment explanation
Indices: 15056502--15056583 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 29
15056492 TAATTACATA
*
15056502 TAATATAATTTATATATTATAAAACAATTGT
1 TAAT-TAATTTA-ATATTATAAAACAATAGT
* *
15056533 TATTTTACTTTAATATTA-ATAAACAATAGTT
1 TA-ATTAATTTAATATTATA-AAACAATAG-T
15056564 TAATTAATTTAATAATTATA
1 TAATTAATTTAAT-ATTATA
15056584 TATAACTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
29 1 0.02
30 23 0.56
31 15 0.37
32 2 0.05
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (29 bp):
TAATTAATTTAATATTATAAAACAATAGT
Found at i:15057606 original size:15 final size:14
Alignment explanation
Indices: 15057583--15057690 Score: 57
Period size: 13 Copynumber: 7.8 Consensus size: 14
15057573 AAAACTTATT
*
15057583 ATTACAATTATCATA
1 ATTATAATTAT-ATA
15057598 ATTATAATT-TATA
1 ATTATAATTATATA
*
15057611 ATTAT-ATTATGTA
1 ATTATAATTATATA
* * * *
15057624 GTTTTTATAATATA
1 ATTATAATTATATA
15057638 ATTTATAA-TATAATA
1 A-TTATAATTAT-ATA
*
15057653 A-TA-AACTATATA
1 ATTATAATTATATA
*
15057665 AAT-TAATTATAATTA
1 ATTATAATTAT-A-TA
15057680 ATTATAATTAT
1 ATTATAATTAT
15057691 TAAATGATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 19
0.70 0.12 0.19
Matches are distributed among these distances:
12 9 0.13
13 25 0.35
14 10 0.14
15 20 0.28
16 7 0.10
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (14 bp):
ATTATAATTATATA
Found at i:15057644 original size:12 final size:12
Alignment explanation
Indices: 15057627--15057651 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15057617 TTATGTAGTT
15057627 TTTATAATATAA
1 TTTATAATATAA
15057639 TTTATAATATAA
1 TTTATAATATAA
15057651 T
1 T
15057652 AATAAACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTATAATATAA
Found at i:15057680 original size:10 final size:10
Alignment explanation
Indices: 15057665--15057689 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
15057655 AAACTATATA
15057665 AATTAATTAT
1 AATTAATTAT
15057675 AATTAATTAT
1 AATTAATTAT
15057685 AATTA
1 AATTA
15057690 TTAAATGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
AATTAATTAT
Found at i:15058256 original size:15 final size:15
Alignment explanation
Indices: 15058238--15058280 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
15058228 AATATATCAT
15058238 ATTATTATATATTAA
1 ATTATTATATATTAA
* * *
15058253 ATTATAATATTTTTA
1 ATTATTATATATTAA
15058268 ATTATTATTATAT
1 ATTATTA-TATAT
15058281 AGATTAATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTATTATATATTAA
Found at i:15059777 original size:19 final size:20
Alignment explanation
Indices: 15059753--15059790 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
15059743 ATTTATTAAA
15059753 TTATTAGTAT-AATAATTAT
1 TTATTAGTATAAATAATTAT
*
15059772 TTATTATTATAAATAATTA
1 TTATTAGTATAAATAATTA
15059791 ATGTTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
TTATTAGTATAAATAATTAT
Found at i:15060219 original size:20 final size:19
Alignment explanation
Indices: 15060194--15060234 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
15060184 AACAGATAAT
15060194 TATTAA-TTATTTAATATTAA
1 TATTAATTTA-TT-ATATTAA
15060214 TATTAATTTATTATATTAA
1 TATTAATTTATTATATTAA
15060233 TA
1 TA
15060235 AGTTTGTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 9 0.45
20 8 0.40
21 3 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TATTAATTTATTATATTAA
Found at i:15060525 original size:9 final size:9
Alignment explanation
Indices: 15060513--15060571 Score: 59
Period size: 9 Copynumber: 6.3 Consensus size: 9
15060503 ATATAAAGTT
15060513 TAATTATAA
1 TAATTATAA
15060522 TAATTGATAA
1 TAATT-ATAA
15060532 T-ATT-TAA
1 TAATTATAA
*
15060539 TTATTATAA
1 TAATTATAA
15060548 TTAATTAAATAA
1 -TAATT--ATAA
15060560 TAATTATAA
1 TAATTATAA
15060569 TAA
1 TAA
15060572 ACATAACTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
7 4 0.09
8 3 0.07
9 18 0.42
10 9 0.21
11 5 0.12
12 4 0.09
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (9 bp):
TAATTATAA
Found at i:15060673 original size:10 final size:10
Alignment explanation
Indices: 15060658--15060692 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
15060648 TTATAAGCTT
15060658 ATAAATTATA
1 ATAAATTATA
15060668 ATAAATTCATA
1 ATAAATT-ATA
*
15060679 ATATATTATA
1 ATAAATTATA
15060689 ATAA
1 ATAA
15060693 TAATTGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (10 bp):
ATAAATTATA
Found at i:15060836 original size:12 final size:11
Alignment explanation
Indices: 15060778--15060837 Score: 50
Period size: 12 Copynumber: 5.3 Consensus size: 11
15060768 ATAGAATTTA
15060778 TAATTAT-TAT
1 TAATTATATAT
* *
15060788 AAATTATAAAT
1 TAATTATATAT
*
15060799 AAAATTATATAT
1 -TAATTATATAT
*
15060811 TAATTATTTAAT
1 TAATTATAT-AT
15060823 TAATTATAATAT
1 TAATTAT-ATAT
15060835 TAA
1 TAA
15060838 CTGATATAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
10 6 0.15
11 9 0.22
12 24 0.60
13 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATTATATAT
Found at i:15061108 original size:16 final size:16
Alignment explanation
Indices: 15061089--15061126 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
15061079 TCAATATTAA
15061089 TATATAATTAATAT-AT
1 TATA-AATTAATATAAT
*
15061105 TATAAATTATTATAAT
1 TATAAATTAATATAAT
15061121 TATAAA
1 TATAAA
15061127 AATAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAAATTAATATAAT
Found at i:15061300 original size:18 final size:19
Alignment explanation
Indices: 15061279--15061356 Score: 60
Period size: 18 Copynumber: 4.2 Consensus size: 19
15061269 TTATTAAATA
15061279 ATAAT-TATTTACAATATT
1 ATAATATATTTACAATATT
*
15061297 ATAA-ATA-TTA-ATTATAT
1 ATAATATATTTACAATAT-T
*
15061314 ATAATATAGTTTATAA-A-T
1 ATAATATA-TTTACAATATT
15061332 ATAATATATTTACATTATATT
1 ATAATATATTTACA--ATATT
15061353 ATAA
1 ATAA
15061357 GATAATAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 17
0.70 0.04 0.25
Matches are distributed among these distances:
16 4 0.09
17 13 0.28
18 18 0.38
19 1 0.02
20 5 0.11
21 6 0.13
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (19 bp):
ATAATATATTTACAATATT
Found at i:15061308 original size:25 final size:26
Alignment explanation
Indices: 15061264--15061366 Score: 104
Period size: 29 Copynumber: 3.8 Consensus size: 26
15061254 TTATAAATTA
15061264 ATATATTATTAAATAATAATTATTTAC
1 ATATATTA-TAAATAATAATTATTTAC
*
15061291 A-ATATTATAAATATTAATTATATATA-
1 ATATATTATAAATAATAATTAT-T-TAC
15061317 ATATAGTTTATAAAT-ATAATATATTTAC
1 ATATA--TTATAAATAATAAT-TATTTAC
15061345 ATTATATTATAAGATAATAATT
1 A-TATATTATAA-ATAATAATT
15061367 CCATATTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 19
0.75 0.02 0.22
Matches are distributed among these distances:
25 13 0.20
26 8 0.12
27 14 0.22
28 9 0.14
29 20 0.31
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (26 bp):
ATATATTATAAATAATAATTATTTAC
Found at i:15061312 original size:54 final size:56
Alignment explanation
Indices: 15061254--15061366 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 56
15061244 TTATTATATT
*
15061254 TTATAAATTAATATA--TTATTAAATAATAAT-TATTTACA-ATATTATAA-ATATTAA
1 TTATAAA-TAATATAGTTTA-TAAAT-ATAATATATTTACATATATTATAAGATAATAA
*
15061308 TTATATATAATATAGTTTATAAATATAATATATTTACATTATATTATAAGATAATAA
1 TTATAAATAATATAGTTTATAAATATAATATATTTACA-TATATTATAAGATAATAA
15061365 TT
1 TT
15061367 CCATATTATT
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
53 12 0.24
54 19 0.37
55 3 0.06
56 9 0.18
57 8 0.16
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (56 bp):
TTATAAATAATATAGTTTATAAATATAATATATTTACATATATTATAAGATAATAA
Found at i:15061446 original size:18 final size:18
Alignment explanation
Indices: 15061401--15061448 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 18
15061391 TAAATAAATT
15061401 ATATAA-TAAATTA-ATA
1 ATATAATTAAATTATATA
*
15061417 ATAT--TT-ATTTATATA
1 ATATAATTAAATTATATA
15061432 ATATAATTAAATTATAT
1 ATATAATTAAATTATAT
15061449 TAAATTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
14 4 0.16
15 8 0.32
16 4 0.16
17 2 0.08
18 7 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATAATTAAATTATATA
Found at i:15061448 original size:28 final size:29
Alignment explanation
Indices: 15061395--15061482 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 29
15061385 TTGTACTAAA
*
15061395 TAAA-TTATATAATA-AATT-AATAATAT
1 TAAATTTATATAATATAATTAAATTATAT
*
15061421 T-TATTTATATAATATAATTAAATTATAT
1 TAAATTTATATAATATAATTAAATTATAT
*
15061449 TAAATTTATA-ATTATAA--AAATTATAAT
1 TAAATTTATATAATATAATTAAATTAT-AT
15061476 GTAAATT
1 -TAAATT
15061483 ATTAATTCAA
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
25 1 0.02
26 18 0.35
27 6 0.12
28 20 0.38
29 7 0.13
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (29 bp):
TAAATTTATATAATATAATTAAATTATAT
Found at i:15061673 original size:23 final size:23
Alignment explanation
Indices: 15061642--15061697 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
15061632 TTTAAATATA
15061642 AATTCTTAATAATAACT-ATAGTAT
1 AATT-TTAATAATAA-TAATAGTAT
* * *
15061666 TATTTTAATTATAATAATATTAT
1 AATTTTAATAATAATAATAGTAT
15061689 AATTTTAAT
1 AATTTTAAT
15061698 TGTAATATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 1 0.04
23 23 0.85
24 3 0.11
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.50
Consensus pattern (23 bp):
AATTTTAATAATAATAATAGTAT
Found at i:15061726 original size:28 final size:26
Alignment explanation
Indices: 15061695--15061747 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
15061685 TTATAATTTT
15061695 AATTGTAATA-TAATTTTTAATTAAACAA
1 AATTG-AATATTAA-TTTTAA-TAAACAA
*
15061723 AATTGGATATTAATTTTAATAAACA
1 AATTGAATATTAATTTTAATAAACA
15061748 GTAGTATATG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 6 0.26
27 9 0.39
28 8 0.35
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.42
Consensus pattern (26 bp):
AATTGAATATTAATTTTAATAAACAA
Found at i:15061847 original size:12 final size:12
Alignment explanation
Indices: 15061830--15061934 Score: 56
Period size: 12 Copynumber: 9.6 Consensus size: 12
15061820 TACAAACAAT
15061830 ATATTATAATTA
1 ATATTATAATTA
*
15061842 ATATTATAATCA
1 ATATTATAATTA
*
15061854 GT-TT-TAATT-
1 ATATTATAATTA
15061863 -TATT-TAA-TA
1 ATATTATAATTA
15061872 ATATTAT--TTA
1 ATATTATAATTA
15061882 A-ATTATTAATTA
1 ATATTA-TAATTA
*
15061894 ATA-TATTGATTA
1 ATATTA-TAATTA
15061906 ATATTATTAA-TA
1 ATATTA-TAATTA
*
15061918 ATA-AAT-ATTA
1 ATATTATAATTA
15061928 ATATTAT
1 ATATTAT
15061935 TAATATTAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 25
0.70 0.07 0.24
Matches are distributed among these distances:
8 2 0.03
9 10 0.14
10 18 0.24
11 6 0.08
12 32 0.43
13 6 0.08
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (12 bp):
ATATTATAATTA
Found at i:15061881 original size:22 final size:22
Alignment explanation
Indices: 15061856--15061897 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
15061846 TATAATCAGT
*
15061856 TTTAATTTATTTAA-TAATATTA
1 TTTAAATTA-TTAATTAATATTA
15061878 TTTAAATTATTAATTAATAT
1 TTTAAATTATTAATTAATAT
15061898 ATTGATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTAAATTATTAATTAATATTA
Found at i:15061910 original size:22 final size:21
Alignment explanation
Indices: 15061885--15061945 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
15061875 TTATTTAAAT
*
15061885 TATTAATTAATAT-ATTGATTAA
1 TATT-ATTAATATAAAT-ATTAA
15061907 TATTATTAATAATAAATATTAA
1 TATTATTAAT-ATAAATATTAA
*
15061929 TATTATTAATATTAATA
1 TATTATTAATATAAATA
15061946 ACTATTGGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 12 0.34
22 21 0.60
23 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTATTAATATAAATATTAA
Found at i:15061919 original size:28 final size:25
Alignment explanation
Indices: 15061866--15061951 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 25
15061856 TTTAATTTAT
*
15061866 TTAATAATATT-AT-TTAAATTATTAA
1 TTAATAATATTAATATT--ATTAATAA
15061891 TTAATATATTGATTAATATTATTAATAA
1 TTAATA-A-T-ATTAATATTATTAATAA
15061919 -T-A-AATATTAATATTATTAAT-A
1 TTAATAATATTAATATTATTAATAA
15061940 TTAATAACTATT
1 TTAATAA-TATT
15061952 GGTAATAAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 18
0.73 0.01 0.26
Matches are distributed among these distances:
21 1 0.02
22 16 0.31
23 2 0.04
24 3 0.06
25 11 0.22
26 2 0.04
27 2 0.04
28 10 0.20
29 2 0.04
30 2 0.04
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (25 bp):
TTAATAATATTAATATTATTAATAA
Found at i:15062095 original size:20 final size:18
Alignment explanation
Indices: 15062051--15062097 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 18
15062041 TTGTTTATTA
15062051 TAATATAATAACTAGATAT
1 TAATAT-ATAACTAGATAT
*
15062070 T-TTATATAACATAGTATAT
1 TAATATATAAC-TAG-ATAT
15062089 TAATATATA
1 TAATATATA
15062098 TTTAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 6 0.26
20 6 0.26
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (18 bp):
TAATATATAACTAGATAT
Found at i:15065901 original size:17 final size:17
Alignment explanation
Indices: 15065878--15065913 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15065868 ATAGGTAACT
*
15065878 TTTTTTTTTGTTTTTTTA
1 TTTTTTATT-TTTTTTTA
15065896 TTTTTTATTTTTTTTTA
1 TTTTTTATTTTTTTTTA
15065913 T
1 T
15065914 CAAAGCTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.08, C:0.00, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTTATTTTTTTTTA
Found at i:15066003 original size:42 final size:41
Alignment explanation
Indices: 15065918--15066339 Score: 528
Period size: 42 Copynumber: 10.1 Consensus size: 41
15065908 TTTTATCAAA
*** *
15065918 GCTCCTCTAAACAGAGGCTTAACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
15065959 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
**
15066001 GCTCCTCTAAACAGAGGCACCGTGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAGTAAATT
*
15066043 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
* ** * *
15066085 GCTCCTCTAAATAGAGGCATTACAATTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
*
15066127 GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
* * *
15066169 GCTCATCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATT
15066211 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
15066252 GCTCCTCCAAACAGAGGCA--ACGAAACTTTGAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACG--ACTTTGAAAAGTAAATT
* * *
15066293 GCTCCTCTAAACAGAGGTA--ACGAAACTTTGAAAAATAAATG
1 GCTCCTCTAAACAGAGGCACCACG--ACTTTGAAAAGTAAATT
15066334 GCTCCT
1 GCTCCT
15066340 TGAAAATCAT
Statistics
Matches: 346, Mismatches: 29, Indels: 12
0.89 0.07 0.03
Matches are distributed among these distances:
39 3 0.01
41 119 0.34
42 219 0.63
43 5 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:15066666 original size:44 final size:44
Alignment explanation
Indices: 15066605--15066709 Score: 117
Period size: 43 Copynumber: 2.4 Consensus size: 44
15066595 TTCAAGGCTT
* * *
15066605 TTCAAAGGTTCTCATTTGGCAAACTTGG-AATTCATATCCAAAAA
1 TTCAAAGCTTTTCATTTGG-AAACTTGGAAATTCACATCCAAAAA
** *
15066649 -TCTAAAGCTTTTCATTT-GAATTTTGGAAATTCACATCCAAGAA
1 TTC-AAAGCTTTTCATTTGGAAACTTGGAAATTCACATCCAAAAA
15066692 TTCAAAGCTTTTCATTTG
1 TTCAAAGCTTTTCATTTG
15066710 AGTTCAAAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
42 6 0.12
43 31 0.61
44 14 0.27
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.37
Consensus pattern (44 bp):
TTCAAAGCTTTTCATTTGGAAACTTGGAAATTCACATCCAAAAA
Found at i:15066687 original size:43 final size:42
Alignment explanation
Indices: 15066629--15066710 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 42
15066619 TTTGGCAAAC
*
15066629 TTGGAATTCATATCCAAAAA-TCTAAAGCTTTTCATTTGAATT
1 TTGGAATTCACATCCAAAAATTC-AAAGCTTTTCATTTGAATT
*
15066671 TTGGAAATTCACATCCAAGAATTCAAAGCTTTTCATTTGA
1 TTGG-AATTCACATCCAAAAATTCAAAGCTTTTCATTTGA
15066711 GTTCAAAGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
42 4 0.11
43 30 0.83
44 2 0.06
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (42 bp):
TTGGAATTCACATCCAAAAATTCAAAGCTTTTCATTTGAATT
Found at i:15068043 original size:11 final size:11
Alignment explanation
Indices: 15068027--15068112 Score: 60
Period size: 11 Copynumber: 8.2 Consensus size: 11
15068017 TCTTTTTTCA
15068027 TTTTCTCATTT
1 TTTTCTCATTT
15068038 TTTTCTTC-TTT
1 TTTTC-TCATTT
15068049 TTTTCT--TTT
1 TTTTCTCATTT
*
15068058 TTTT-TCCTTT
1 TTTTCTCATTT
*
15068068 TTTATAT-ATTT
1 TTT-TCTCATTT
*
15068079 TTTTATCATCTT
1 TTTTCTCAT-TT
*
15068091 TTTTTTC--TT
1 TTTTCTCATTT
15068100 TTTTCTCATTT
1 TTTTCTCATTT
15068111 TT
1 TT
15068113 CATCCATTGT
Statistics
Matches: 63, Mismatches: 3, Indels: 18
0.75 0.04 0.21
Matches are distributed among these distances:
8 1 0.02
9 15 0.24
10 10 0.16
11 26 0.41
12 11 0.17
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTCTCATTT
Found at i:15072498 original size:60 final size:60
Alignment explanation
Indices: 15072369--15072591 Score: 229
Period size: 60 Copynumber: 3.6 Consensus size: 60
15072359 TCTTGTGTAG
* *
15072369 GGAAAATTGATACTTTCAACTTTTTTCCAAAATATTTTTTTTTTGTGAAAAGC-TTATTTTCAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCAAAATATTTTTTTTTT-T-AAAA-CTTTAATTTCAA
*
15072432 GGAAAATTGATACTTTCAA-TTTTCCCAAAATATTTTTGTTTTTTAAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAATATTTTT-TTTTTTAAAACTTTAATTTCAA
* * **** * * *
15072492 GGAAAATTGATACTTTCAACTTTTTCTCAAAAAAAACCTTTTCTGAAAA-TTTAATTTTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCAAAATATTTTTTTTTTTAAAACTTTAATTTCAA
15072552 GGAAAATTGATACTTTCAA-TATTTCTCCAAAAATATTTTT
1 GGAAAATTGATACTTTCAACT-TTTC-CC-AAAATATTTTT
15072592 AGAAAACTTA
Statistics
Matches: 134, Mismatches: 19, Indels: 16
0.79 0.11 0.09
Matches are distributed among these distances:
58 1 0.01
59 5 0.04
60 60 0.45
61 32 0.24
62 17 0.13
63 19 0.14
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.44
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAATATTTTTTTTTTTAAAACTTTAATTTCAA
Found at i:15072871 original size:58 final size:56
Alignment explanation
Indices: 15072776--15072885 Score: 193
Period size: 58 Copynumber: 1.9 Consensus size: 56
15072766 CTGTCTCATG
15072776 TTCACGTCATTTATATCATCCATTTCATGCAGCTGCTTTTGTTGCTGTTGCTGTTGCT
1 TTCACGTCATTTATATCATCCATTTCATGCAGCTGCTTTTGTTGC-GTT-CTGTTGCT
*
15072834 TTCATGTCATTTATATCATCCATTTCATGCAGCTGCTTTTGTTGCGTTCTGT
1 TTCACGTCATTTATATCATCCATTTCATGCAGCTGCTTTTGTTGCGTTCTGT
15072886 AGTTGTTGCA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
56 4 0.08
57 3 0.06
58 44 0.86
ACGTcount: A:0.15, C:0.22, G:0.16, T:0.47
Consensus pattern (56 bp):
TTCACGTCATTTATATCATCCATTTCATGCAGCTGCTTTTGTTGCGTTCTGTTGCT
Found at i:15074013 original size:370 final size:372
Alignment explanation
Indices: 15073330--15074329 Score: 1794
Period size: 370 Copynumber: 2.7 Consensus size: 372
15073320 CTATAGTGCT
* *
15073330 AATGTCATGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCTCTGGGGT
1 AATGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGT
*
15073395 ATATAAGGGTTCACACCACCTCCGCCTTGTGAGGCGCCTTTTGTAGGATAAAACCGTGAGGCCAA
66 ATATAAGGGTTCACACCACCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAA
15073460 GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAGATAGGCTGATTCGGGACA
131 GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAGATAGGCTGATTCGGGACA
*
15073525 CCGGAAGGGTGAATGCCCGGGTCCCGAAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
196 CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
* *
15073590 AAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCCGAGCGCCTCGAGGGAGGTAGGCAG
261 AAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAGGCAG
*
15073655 GGTGGCCGGCCTCCGTGACGAGGGCGTCATGAGGTTGGGTGCGGGAG
326 GGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAG
** *
15073702 AATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCCCTGGGGT
1 AATGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGT
* * *
15073767 ATAAAAGGGTTCACACCATCTCCGTCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCC-A
66 ATATAAGGGTTCACACCACCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAA
15073831 -GGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAGATAGGCTGATTCGGGACA
131 GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAGATAGGCTGATTCGGGACA
15073895 CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
196 CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
15073960 AAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAGGCAG
261 AAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAGGCAG
* *
15074025 GGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGTGTGAG
326 GGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAG
15074072 AATGTCACGGACCTAA-GAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGT
1 AATGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGT
*
15074136 ATATAAGGGTTCACACCACCTCCGCCTTGTGAGGTGCCTTTTGTAGGACAAAACCGTGAGGCCAA
66 ATATAAGGGTTCACACCACCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAA
*
15074201 GGGGGGCCAGAGCGGATAATACCTCACAAGGGTGTGAACCGTGGCAGATAGGCTGATTCGGGACA
131 GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAGATAGGCTGATTCGGGACA
* *
15074266 CC-GAAGGGTGAATGCCCGGGTCCCGGAGTCGCGC-GGTTCGGAGCTTAAGTCTCAACCCGTGAC
196 CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
15074329 A
261 A
15074330 CTAAGACTGC
Statistics
Matches: 601, Mismatches: 25, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
369 133 0.22
370 283 0.47
371 66 0.11
372 119 0.20
ACGTcount: A:0.24, C:0.25, G:0.33, T:0.18
Consensus pattern (372 bp):
AATGTCACGGACCTAAGGAAGAGTCCTGAATCCCACATCGAACATAATAGGAGGGTCCCTGGGGT
ATATAAGGGTTCACACCACCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCAA
GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCAGATAGGCTGATTCGGGACA
CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGAC
AAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTAGGCAG
GGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGAG
Found at i:15075284 original size:21 final size:21
Alignment explanation
Indices: 15075260--15075301 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15075250 GCCCATTTCT
*
15075260 GGAAGCACTAAATGCGGGGAA
1 GGAAGCACCAAATGCGGGGAA
15075281 GGAAGCACCAAATGCGGGGAA
1 GGAAGCACCAAATGCGGGGAA
15075302 AATCCAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.17, G:0.38, T:0.07
Consensus pattern (21 bp):
GGAAGCACCAAATGCGGGGAA
Found at i:15075975 original size:20 final size:23
Alignment explanation
Indices: 15075938--15075985 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
15075928 TAATATAAAT
*
15075938 TATAAATTTCTATTAAT-AGTTA
1 TATAAATTTCTATGAATAAGTTA
15075960 TATAAA-TT-TATGAATAAGTTA
1 TATAAATTTCTATGAATAAGTTA
15075981 TATAA
1 TATAA
15075986 TTATTTGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 6 0.25
21 12 0.50
22 6 0.25
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (23 bp):
TATAAATTTCTATGAATAAGTTA
Found at i:15077866 original size:17 final size:17
Alignment explanation
Indices: 15077835--15077868 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15077825 AAATAATTAA
**
15077835 TTATTATAATGTTATAT
1 TTATTATAACATTATAT
15077852 TTATTATAACATTATAT
1 TTATTATAACATTATAT
15077869 AAATATCCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
TTATTATAACATTATAT
Found at i:15077930 original size:25 final size:24
Alignment explanation
Indices: 15077893--15077960 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 24
15077883 TATTTATATA
*
15077893 AAATTATAATTATATTATTGTAATTT
1 AAATTA-ATTTATATTATT-TAATTT
15077919 AAATTAATTTATA-TAGTATTAATTT
1 AAATTAATTTATATTA-T-TTAATTT
*
15077944 AAATT-ATTAATATTATT
1 AAATTAATTTATATTATT
15077961 AGTTAATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
23 1 0.03
24 9 0.24
25 20 0.54
26 7 0.19
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (24 bp):
AAATTAATTTATATTATTTAATTT
Found at i:15077963 original size:28 final size:26
Alignment explanation
Indices: 15077921--15077984 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 26
15077911 TGTAATTTAA
*
15077921 ATTAAT-TTATATAGTATTAATTTAAATT
1 ATTAATATTATATAG--TTAATATAAA-T
15077949 ATTAATATTAT-TAGTTAATATAAAT
1 ATTAATATTATATAGTTAATATAAAT
15077974 ATTATATATTA
1 ATTA-ATATTA
15077985 CAATATTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 5 0.15
26 15 0.45
28 9 0.27
29 4 0.12
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (26 bp):
ATTAATATTATATAGTTAATATAAAT
Found at i:15078452 original size:180 final size:177
Alignment explanation
Indices: 15078137--15078578 Score: 471
Period size: 180 Copynumber: 2.5 Consensus size: 177
15078127 AATTAACAAT
* * * * * * *
15078137 TTCAAAAATTAATAAGTAAGAG-TTTAAAAAATGAATCTATTTACTGAATCAGTTTAAATAATTA
1 TTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTGCTGAACCAATTCAAATAATTA
* * * * * * *
15078201 TGACTATTTGAATAATTCTATACTTCATATCATTATAACCTTTTTGTCATAAAATAATTATTTCT
66 AGACTATTTGAACAATTATATAATTCAAATCATTATAACCTTTTTGTCATAAAACAATTATTTCA
*
15078266 ATTCATACAAGCTTATTCAAAATAAAACAACATGAATCTAATAATA-
131 ATTCATACAAGCTTATTCAAAATAAAACAAAATGAATCTAATAATAG
* * * * *
15078312 TTCAAAAAATTATTAACTAAGGGATTTAAAAAATAAATTTATTTGTTGAACCAATTCAAATAGTT
1 TTC-AAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTGCTGAACCAATTCAAATAATT
* * * *
15078377 AAGACTATATGAACAATTATCTAATTCAAATCGTTATGACCTTTGTCTTGTCATAAAACAATT-T
65 AAGACTATTTGAACAATTATATAATTCAAATCATTATAACC-TT-T-TTGTCATAAAACAATTAT
* ** * * **
15078441 TCTCAATTCATACTAGCTTATTTGAAATAAAATAAAATGAATTTGTTAATAG
127 T-TCAATTCATACAAGCTTATTCAAAATAAAACAAAATGAATCTAATAATAG
* * * *
15078493 TTCAAAATTTAATAAATAAGAGATTTAAAAAATAATTTTGTTTGCCT-AACCAATTCAAAAAATT
1 TTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTG-CTGAACCAATTCAAATAATT
*
15078557 -ATACTATTTGAACAATTATATA
65 AAGACTATTTGAACAATTATATA
15078579 TTTTAAAGTA
Statistics
Matches: 217, Mismatches: 42, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
175 3 0.01
176 16 0.07
177 65 0.30
178 2 0.01
179 22 0.10
180 105 0.48
181 4 0.02
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (177 bp):
TTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTGCTGAACCAATTCAAATAATTA
AGACTATTTGAACAATTATATAATTCAAATCATTATAACCTTTTTGTCATAAAACAATTATTTCA
ATTCATACAAGCTTATTCAAAATAAAACAAAATGAATCTAATAATAG
Found at i:15078651 original size:180 final size:177
Alignment explanation
Indices: 15078137--15078687 Score: 465
Period size: 180 Copynumber: 3.1 Consensus size: 177
15078127 AATTAACAAT
* * * * * * * *
15078137 TTCAAAAATTAATAAGTAAGAG-TTTAAAAAATGAATCTATTTACTGAATCAGTTTAAATAATTA
1 TTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTGCTGAACCAATTCAAAAAATTA
* * * * * * * * *
15078201 TGACTATTTGAATAATTCTATACTTCATATCATTATAACC--T-TTTTGTCATAAAATAATTATT
66 AGACTATATGAACAATTATATAATTCAAATCATTATGACCTTTGTTTTGTCATAAAACAAATATT
* * * * *
15078263 TCTATTCATACAAGCTTATTCAAAATAAAACAACATGAATCTAATAATA
131 TCT-CTCATA-TAGCTTATTCAAAATAAAATAAAATGAATCTATTAATA
* * * * * *
15078312 TTCAAAAAATTATTAACTAAGGGATTTAAAAAATAAATTTATTTGTTGAACCAATTCAAATAGTT
1 TTC-AAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTGCTGAACCAATTCAAAAAATT
* * *
15078377 AAGACTATATGAACAATTATCTAATTCAAATCGTTATGACCTTTGTCTTGTCATAAAAC-AAT-T
65 AAGACTATATGAACAATTATATAATTCAAATCATTATGACCTTTGTTTTGTCATAAAACAAATAT
** * *
15078440 TTCTCAATTCATACTAGCTTATTTGAAATAAAATAAAATGAATTTGTTAATA
130 TTCTC---TCATA-TAGCTTATTCAAAATAAAATAAAATGAATCTATTAATA
* * *
15078492 GTTCAAAATTTAATAAATAAGAGATTTAAAAAATAATTTTGTTTGCCT-AACCAATTCAAAAAAT
1 -TTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTG-CTGAACCAATTCAAAAAAT
* * * * * *
15078556 T-ATACTATTTGAACAATTATATATTTTAAAGT-ATTATTACTTTTTGTTTTGTCATAAAACAAA
64 TAAGACTATATGAACAATTATATAATTCAAA-TCATTATGAC-CTTTGTTTTGTCATAAAACAAA
* * * *
15078619 TATTTTTGCTCATATGAGTTTATTCAAAATAAAGTAATACT-AATCTATTAATA
127 TATTTCT-CTCATAT-AGCTTATTCAAAATAAAATAA-AATGAATCTATTAATA
15078672 TTTCAAAAATTAATAA
1 -TTCAAAAATTAATAA
15078688 GTGATTTAAA
Statistics
Matches: 299, Mismatches: 60, Indels: 29
0.77 0.15 0.07
Matches are distributed among these distances:
175 3 0.01
176 16 0.05
177 65 0.22
178 5 0.02
179 34 0.11
180 162 0.54
181 9 0.03
182 4 0.01
183 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.39
Consensus pattern (177 bp):
TTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTATTTGCTGAACCAATTCAAAAAATTA
AGACTATATGAACAATTATATAATTCAAATCATTATGACCTTTGTTTTGTCATAAAACAAATATT
TCTCTCATATAGCTTATTCAAAATAAAATAAAATGAATCTATTAATA
Found at i:15078942 original size:6 final size:6
Alignment explanation
Indices: 15078916--15078967 Score: 63
Period size: 6 Copynumber: 8.5 Consensus size: 6
15078906 GATTATTATA
15078916 TATAAGT TATAAAT T-TAAT TATAAT TATAAT TATAAT TA-AAT TATATAT
1 TATAA-T TAT-AAT TATAAT TATAAT TATAAT TATAAT TATAAT TATA-AT
15078965 TAT
1 TAT
15078968 TTTTTATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
5 9 0.22
6 20 0.49
7 10 0.24
8 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (6 bp):
TATAAT
Found at i:15078966 original size:18 final size:18
Alignment explanation
Indices: 15078909--15078967 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
15078899 ATTAATAGAT
*
15078909 TATTAT-ATATAAGTTATA
1 TATTATAAT-TAAATTATA
*
15078927 AATT-TAATTATAATTATA
1 TATTATAATTA-AATTATA
15078945 -ATTATAATTAAATTATA
1 TATTATAATTAAATTATA
15078962 TATTAT
1 TATTAT
15078968 TTTTTATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 13 0.37
18 22 0.63
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTATAATTAAATTATA
Found at i:15079353 original size:13 final size:13
Alignment explanation
Indices: 15079335--15079369 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
15079325 TTTCAAGACT
15079335 TAATATTAATTAG
1 TAATATTAATTAG
15079348 TAATATTAA-TAG
1 TAATATTAATTAG
15079360 T-ATATTAATT
1 TAATATTAATT
15079370 CAAATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 5 0.24
13 9 0.43
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (13 bp):
TAATATTAATTAG
Found at i:15079435 original size:22 final size:23
Alignment explanation
Indices: 15079382--15079438 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
15079372 AATATAATTT
*
15079382 AAATAATAATTAATCATATATATA
1 AAATAAT-ATTAATAATATATATA
* *
15079406 AATTTAATATTAATAATAT-TTTA
1 AA-ATAATATTAATAATATATATA
15079429 AAATAATATT
1 AAATAATATT
15079439 CCAAAAATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 7 0.25
23 5 0.18
24 12 0.43
25 4 0.14
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
AAATAATATTAATAATATATATA
Found at i:15079568 original size:22 final size:22
Alignment explanation
Indices: 15079510--15079574 Score: 55
Period size: 24 Copynumber: 2.9 Consensus size: 22
15079500 ATATATAACA
15079510 TTATAATATATATAATA--A-TT
1 TTATAATAT-TATAATACTATTT
* *
15079530 TTATAAAATAACTTAATACTATTT
1 TTATAATATTA--TAATACTATTT
15079554 TTATAATATTATAATAACTAT
1 TTATAATATTATAAT-ACTAT
15079575 AAATAATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
19 1 0.03
20 8 0.23
21 5 0.14
22 4 0.11
23 6 0.17
24 11 0.31
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
TTATAATATTATAATACTATTT
Found at i:15079583 original size:43 final size:44
Alignment explanation
Indices: 15079510--15079606 Score: 110
Period size: 43 Copynumber: 2.2 Consensus size: 44
15079500 ATATATAACA
* * *
15079510 TTATAATATATATAATAATTTTATAAAATAACTTAATACTATT-T
1 TTATAATATATATAATAACTATATAAAATAA-ATAATACTATTAT
*
15079554 TTATAATAT-TATAATAACTATA-AATAATAAATAATATTATTAT
1 TTATAATATATATAATAACTATATAA-AATAAATAATACTATTAT
*
15079597 TTATTATATA
1 TTATAATATA
15079607 ATTGTAATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 11 0.24
43 25 0.56
44 9 0.20
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (44 bp):
TTATAATATATATAATAACTATATAAAATAAATAATACTATTAT
Found at i:15079621 original size:26 final size:24
Alignment explanation
Indices: 15079585--15079648 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 24
15079575 AAATAATAAA
* * *
15079585 TAATATTATTATTTATTATATAATTG
1 TAATAATATTATATATTATA-AA-TC
15079611 TAATAATATTATATATTATAAATC
1 TAATAATATTATATATTATAAATC
15079635 TAATAATA-TATATA
1 TAATAATATTATATA
15079649 ATTTGTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 6 0.17
24 9 0.26
25 2 0.06
26 18 0.51
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
TAATAATATTATATATTATAAATC
Found at i:15079751 original size:20 final size:20
Alignment explanation
Indices: 15079700--15079751 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
15079690 TAATTTTTAT
* *
15079700 ATTAAATTATTCTATTAATA
1 ATTAATTTATTTTATTAATA
15079720 ATTAATTTATTTTATTAATA
1 ATTAATTTATTTTATTAATA
15079740 ATTAATTTATTT
1 ATTAATTTATTT
15079752 AAATAAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTAATTTATTTTATTAATA
Found at i:15079801 original size:17 final size:17
Alignment explanation
Indices: 15079779--15079834 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
15079769 ATACTAATAA
15079779 ATTAATTAAAATTAATT
1 ATTAATTAAAATTAATT
* *
15079796 ATTAATATTAAA-TAAAT
1 ATTAAT-TAAAATTAATT
15079813 ATTAATTATAATATATAATT
1 ATTAATTA-AA-AT-TAATT
15079833 AT
1 AT
15079835 ATTATATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 1 0.03
17 18 0.60
18 5 0.17
20 6 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTAATTAAAATTAATT
Found at i:15079830 original size:20 final size:20
Alignment explanation
Indices: 15079785--15079849 Score: 53
Period size: 23 Copynumber: 3.0 Consensus size: 20
15079775 ATAAATTAAT
15079785 TAAA-ATTAATTATTAATATTAAA
1 TAAATATTAATTA-TAATA-T--A
15079808 TAAATATTAATTATAATATA
1 TAAATATTAATTATAATATA
15079828 TAATTATATTATATTAT-ATATA
1 TAA--ATATTA-ATTATAATATA
15079850 AACTATCAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
20 4 0.11
22 12 0.32
23 14 0.37
24 8 0.21
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TAAATATTAATTATAATATA
Found at i:15079835 original size:13 final size:12
Alignment explanation
Indices: 15079775--15079835 Score: 67
Period size: 13 Copynumber: 5.2 Consensus size: 12
15079765 AGATATACTA
15079775 ATAA-ATTAATT
1 ATAATATTAATT
15079786 A-AA-ATTAATT
1 ATAATATTAATT
*
15079796 ATTAATATTAAAT
1 A-TAATATTAATT
15079809 A-AATATTAATT
1 ATAATATTAATT
15079820 ATAATATATAATT
1 ATAATAT-TAATT
15079833 ATA
1 ATA
15079836 TTATATTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
10 10 0.23
11 11 0.26
12 7 0.16
13 15 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
ATAATATTAATT
Found at i:15079840 original size:13 final size:13
Alignment explanation
Indices: 15079791--15079841 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
15079781 TAATTAAAAT
15079791 TAATTATTAATAT-
1 TAATTA-TAATATA
*
15079804 TAAATA-AATAT-
1 TAATTATAATATA
15079815 TAATTATAATATA
1 TAATTATAATATA
*
15079828 TAATTATATTATA
1 TAATTATAATATA
15079841 T
1 T
15079842 TATATATAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 10 0.30
12 5 0.15
13 18 0.55
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TAATTATAATATA
Found at i:15079840 original size:18 final size:18
Alignment explanation
Indices: 15079800--15079847 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
15079790 TTAATTATTA
*
15079800 ATATTA-AATAAAT-ATT
1 ATATTATAATATATAATT
15079816 A-ATTATAATATATAATT
1 ATATTATAATATATAATT
*
15079833 ATATTATATTATATA
1 ATATTATAATATATA
15079848 TAAACTATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 4 0.15
16 7 0.26
17 4 0.15
18 12 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATTATAATATATAATT
Found at i:15080934 original size:10 final size:11
Alignment explanation
Indices: 15080919--15080950 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
15080909 CTAATATATC
15080919 ATAATTTAATT
1 ATAATTTAATT
15080930 A-AATTT-ATT
1 ATAATTTAATT
15080939 ATAATTTAATT
1 ATAATTTAATT
15080950 A
1 A
15080951 CTTATACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.21
10 10 0.53
11 5 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATAATTTAATT
Found at i:15081072 original size:12 final size:12
Alignment explanation
Indices: 15081042--15081078 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
15081032 AATTTGTTTA
*
15081042 ATATTAATATAT
1 ATATTAATATTT
15081054 A-ATTAATATTT
1 ATATTAATATTT
15081065 ATATTAATATTT
1 ATATTAATATTT
15081077 AT
1 AT
15081079 CTAATAGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATATTAATATTT
Found at i:15081109 original size:19 final size:20
Alignment explanation
Indices: 15081087--15081144 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
15081077 ATCTAATAGC
15081087 TTAATT-TTATTATAAATAA
1 TTAATTATTATTATAAATAA
*
15081106 TTAATTATAATTA-AAATAA
1 TTAATTATTATTATAAATAA
* *
15081125 -TAATTAATATTATAATTAA
1 TTAATTATTATTATAAATAA
15081144 T
1 T
15081145 AAATATTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
18 10 0.31
19 17 0.53
20 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAATTATTATTATAAATAA
Found at i:15081145 original size:22 final size:22
Alignment explanation
Indices: 15081101--15081189 Score: 64
Period size: 22 Copynumber: 4.0 Consensus size: 22
15081091 TTTTATTATA
15081101 AATAATT-A-ATTATAATTAAAAT
1 AATAATTAATATTATAATT--AAT
15081123 AATAATTAATATTATAATTAAT
1 AATAATTAATATTATAATTAAT
*
15081145 AA-ATATTAAAATTATTAA-TATAT
1 AATA-ATTAATATTA-TAATTA-AT
*
15081168 GAAT-ATTAATA-TATAAATAAT
1 -AATAATTAATATTATAATTAAT
15081189 A
1 A
15081190 TAGGTTGATA
Statistics
Matches: 57, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
20 1 0.02
21 6 0.11
22 27 0.47
23 12 0.21
24 11 0.19
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (22 bp):
AATAATTAATATTATAATTAAT
Found at i:15081844 original size:27 final size:28
Alignment explanation
Indices: 15081815--15081910 Score: 95
Period size: 32 Copynumber: 3.2 Consensus size: 28
15081805 TAACCTTTAT
*
15081815 TTAAATTAATTTAA-ATAATATTATTAT
1 TTAAATTAATTTAAGATAATATTATTAA
* *
15081842 TTAATAATAATTTAAGTATAATATAATTAA
1 TTAA-ATTAATTTAAG-ATAATATTATTAA
*
15081872 TAAAATTATATTATATTAGATAATATTATTAA
1 TTAAATTA-ATT-TA--AGATAATATTATTAA
15081904 TTAAATT
1 TTAAATT
15081911 GTTTTATTTA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
27 4 0.07
28 9 0.16
29 3 0.05
30 17 0.31
31 2 0.04
32 18 0.33
33 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (28 bp):
TTAAATTAATTTAAGATAATATTATTAA
Found at i:15081881 original size:20 final size:20
Alignment explanation
Indices: 15081858--15081900 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
15081848 ATAATTTAAG
15081858 TATAATATAATTA-ATAAAAT
1 TATAATAT-ATTAGATAAAAT
* *
15081878 TATATTATATTAGATAATAT
1 TATAATATATTAGATAAAAT
15081898 TAT
1 TAT
15081901 TAATTAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TATAATATATTAGATAAAAT
Found at i:15081963 original size:40 final size:42
Alignment explanation
Indices: 15081919--15081998 Score: 103
Period size: 43 Copynumber: 2.0 Consensus size: 42
15081909 TTGTTTTATT
15081919 TAATAAATA-ATATTA-ATA-TTAATAATTACTATATATAAAA
1 TAATAAATATATATTATATATTTAATAATTACTAT-TATAAAA
* * *
15081959 TAATAAATATATCTTATATATTTAATAGTTATTATTATAA
1 TAATAAATATATATTATATATTTAATAATTACTATTATAA
15081999 CTTATAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 9 0.26
41 5 0.15
42 8 0.24
43 12 0.35
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (42 bp):
TAATAAATATATATTATATATTTAATAATTACTATTATAAAA
Found at i:15082184 original size:24 final size:23
Alignment explanation
Indices: 15082132--15082186 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
15082122 TTTTTACTAT
*
15082132 AATATT-AATAATTAATATATTA
1 AATATTAAACAATTAATATATTA
* * *
15082154 CAGATTAAACAATTTATAATATTA
1 AATATTAAACAATTAAT-ATATTA
15082178 AATATTAAA
1 AATATTAAA
15082187 TTAGTATTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
22 4 0.16
23 8 0.32
24 13 0.52
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
AATATTAAACAATTAATATATTA
Found at i:15082549 original size:25 final size:27
Alignment explanation
Indices: 15082498--15082551 Score: 76
Period size: 25 Copynumber: 2.1 Consensus size: 27
15082488 TCAAACCAAT
15082498 TATTAATTATTAATAAATAAATAATAA
1 TATTAATTATTAATAAATAAATAATAA
* *
15082525 TATTAA-TATT-ATAGATAAATTATAA
1 TATTAATTATTAATAAATAAATAATAA
15082550 TA
1 TA
15082552 GTTTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 15 0.60
26 4 0.16
27 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (27 bp):
TATTAATTATTAATAAATAAATAATAA
Found at i:15083345 original size:26 final size:23
Alignment explanation
Indices: 15083278--15083345 Score: 66
Period size: 26 Copynumber: 2.8 Consensus size: 23
15083268 GCATAATCTG
*
15083278 AATAAT-ATAATATTTGATTATT
1 AATAATAATAATATTTTATTATT
* *
15083300 AATAATATTTATGATTTTATTAGTAT
1 AATAATAATAAT-ATTTTATTA-T-T
15083326 AATAATAATAATATTATTAT
1 AATAATAATAATATT-TTAT
15083346 AATTTATAGT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
22 6 0.17
23 3 0.08
24 8 0.22
25 4 0.11
26 15 0.42
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (23 bp):
AATAATAATAATATTTTATTATT
Found at i:15083539 original size:12 final size:12
Alignment explanation
Indices: 15083522--15083546 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15083512 TTAATTATTT
15083522 TAAAATCAGTTA
1 TAAAATCAGTTA
15083534 TAAAATCAGTTA
1 TAAAATCAGTTA
15083546 T
1 T
15083547 TTATAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
TAAAATCAGTTA
Found at i:15083693 original size:32 final size:33
Alignment explanation
Indices: 15083643--15083704 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 33
15083633 ATGAAATAAT
*
15083643 TATTAAATAATATAATAA-TTATTAATTTATAG
1 TATTAAATAACATAATAATTTATTAATTTATAG
* * *
15083675 TATTAAATTACATTATAATTTATTTATTTA
1 TATTAAATAACATAATAATTTATTAATTTA
15083705 GTATAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 15 0.60
33 10 0.40
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (33 bp):
TATTAAATAACATAATAATTTATTAATTTATAG
Found at i:15083836 original size:36 final size:36
Alignment explanation
Indices: 15083774--15083842 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
15083764 TAACTTATAA
* *
15083774 TTATATTATAGTTATTATTTTATAAATTAATATACC
1 TTATATTATAATTATTATTTTATAAATAAATATACC
15083810 TTAT-TTATAATTATTTATTATT-TAAATAAATAT
1 TTATATTATAATTA-TTATT-TTATAAATAAATAT
15083843 TATAATCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 8 0.28
36 19 0.66
37 2 0.07
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (36 bp):
TTATATTATAATTATTATTTTATAAATAAATATACC
Found at i:15083882 original size:8 final size:8
Alignment explanation
Indices: 15083869--15083899 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
15083859 ATAATTGATA
15083869 TATTAATT
1 TATTAATT
15083877 TATTAATT
1 TATTAATT
15083885 TATTAATT
1 TATTAATT
15083893 TA-TAATT
1 TATTAATT
15083900 ATAAGTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 5 0.22
8 18 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TATTAATT
Found at i:15083928 original size:20 final size:20
Alignment explanation
Indices: 15083905--15083964 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
15083895 TAATTATAAG
15083905 TAATAAATTATATAATAATT
1 TAATAAATTATATAATAATT
* *
15083925 TAAT-TATTATATTAATTA-T
1 TAATAAATTATA-TAATAATT
* *
15083944 TAAAAAATTGATGTAATAATT
1 TAATAAATT-ATATAATAATT
15083965 AATTATTCTT
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 10 0.33
20 17 0.57
21 3 0.10
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TAATAAATTATATAATAATT
Found at i:15084138 original size:27 final size:29
Alignment explanation
Indices: 15084090--15084149 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
15084080 TATTAATTAA
15084090 AATAATTAATATTGATAGATAAATAAATAT
1 AATAATTAATATTGATAGATAAATAAAT-T
* *
15084120 AATAATTATTA-T-ATA-ATAAATAGATT
1 AATAATTAATATTGATAGATAAATAAATT
15084146 AATA
1 AATA
15084150 TATAATAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.18
27 9 0.32
28 3 0.11
29 1 0.04
30 10 0.36
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (29 bp):
AATAATTAATATTGATAGATAAATAAATT
Found at i:15084146 original size:19 final size:18
Alignment explanation
Indices: 15084115--15084157 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
15084105 TAGATAAATA
*
15084115 AATATAATAATTATTATAT
1 AATA-AATAATTAATATAT
15084134 AATAAATAGATTAATATAT
1 AATAAATA-ATTAATATAT
15084153 AATAA
1 AATAA
15084158 TTATTTATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
AATAAATAATTAATATAT
Found at i:15084550 original size:20 final size:19
Alignment explanation
Indices: 15084527--15084581 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
15084517 TAATATTATT
*
15084527 ATAATTATTATAATATTTGG
1 ATAATTATTATAATAATT-G
15084547 ATAATTTATTCAT-ATAATTG
1 ATAA-TTATT-ATAATAATTG
15084567 ATAATTATTA-AATAA
1 ATAATTATTATAATAA
15084582 CTAATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 5 0.16
19 5 0.16
20 9 0.29
21 10 0.32
22 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (19 bp):
ATAATTATTATAATAATTG
Found at i:15084698 original size:21 final size:22
Alignment explanation
Indices: 15084674--15084728 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 22
15084664 ATATTAATAG
15084674 TTAATATTATTAAC-ATAATGA
1 TTAATATTATTAACGATAATGA
*
15084695 TTAATATTATT-ACGATAATTA
1 TTAATATTATTAACGATAATGA
15084716 TATAATATTATTA
1 T-TAATATTATTA
15084729 TATATTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 2 0.07
21 18 0.60
22 10 0.33
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (22 bp):
TTAATATTATTAACGATAATGA
Found at i:15084741 original size:17 final size:19
Alignment explanation
Indices: 15084709--15084776 Score: 72
Period size: 19 Copynumber: 3.6 Consensus size: 19
15084699 TATTATTACG
15084709 ATAAT-TATATAATATTATT
1 ATAATATATA-AATATTATT
15084728 AT-ATAT-TAAATATTTATT
1 ATAATATATAAATA-TTATT
15084746 ATAATATAATAAATATTA-T
1 ATAATAT-ATAAATATTATT
15084765 ATAATTATATAA
1 ATAA-TATATAA
15084777 TAATATTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
17 4 0.09
18 11 0.26
19 16 0.37
20 6 0.14
21 6 0.14
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATATATAAATATTATT
Found at i:15084747 original size:21 final size:21
Alignment explanation
Indices: 15084721--15084791 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
15084711 AATTATATAA
*
15084721 TATTATTATATATTAAATATT
1 TATTATTATATAATAAATATT
*
15084742 TATTATAATATAATAAATATT
1 TATTATTATATAATAAATATT
*
15084763 ATATAATTATATAAT-AATATT
1 -TATTATTATATAATAAATATT
*
15084784 AATT-TTAT
1 TATTATTAT
15084792 TAAACAATTG
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
19 4 0.09
20 2 0.05
21 25 0.58
22 12 0.28
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TATTATTATATAATAAATATT
Found at i:15084928 original size:29 final size:30
Alignment explanation
Indices: 15084875--15084933 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
15084865 TATTCTATTG
15084875 TATTAAATAATTAATAAGAATTTATTTAATA
1 TATTAAATAA-TAATAAGAATTTATTTAATA
* *
15084906 TATTAAATAA-ATTAAGTATTTATTTAAT
1 TATTAAATAATAATAAGAATTTATTTAAT
15084934 TAACTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 16 0.62
31 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (30 bp):
TATTAAATAATAATAAGAATTTATTTAATA
Found at i:15085003 original size:24 final size:23
Alignment explanation
Indices: 15084976--15085045 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 23
15084966 CTATACAAAA
15084976 ATAATTTTATTATACAAATATTAT
1 ATAATTTTATTATA-AAATATTAT
* * *
15085000 ATAATTATAATATATAATAATTAAT
1 ATAATTTTATTATAAAAT-ATT-AT
*
15085025 ATAAATTT-TTATAAAATATTA
1 ATAATTTTATTATAAAATATTA
15085046 ATCTTAAACA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
22 1 0.03
23 6 0.16
24 22 0.59
25 8 0.22
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (23 bp):
ATAATTTTATTATAAAATATTAT
Found at i:15085420 original size:27 final size:26
Alignment explanation
Indices: 15085383--15085438 Score: 69
Period size: 29 Copynumber: 2.1 Consensus size: 26
15085373 CTCATAAGCA
*
15085383 ATTTTATTTAT-TATCAATTTTAAATT
1 ATTTTATTTATATATCAATTAT-AATT
15085409 ATTTTAATTTATGATATCAATTATAATT
1 ATTTT-ATTTAT-ATATCAATTATAATT
15085437 AT
1 AT
15085439 AAACATATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 5 0.19
27 6 0.23
28 6 0.23
29 9 0.35
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (26 bp):
ATTTTATTTATATATCAATTATAATT
Found at i:15085562 original size:22 final size:19
Alignment explanation
Indices: 15085537--15085590 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
15085527 AATTATCGGT
15085537 AATAATAATATATCAATATTAC
1 AATAATAATA-AT-AATA-TAC
* *
15085559 AATAATTATAATAATATAT
1 AATAATAATAATAATATAC
*
15085578 AATAATAACAATA
1 AATAATAATAATA
15085591 TTTAATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 13 0.46
20 4 0.14
21 2 0.07
22 9 0.32
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (19 bp):
AATAATAATAATAATATAC
Found at i:15085569 original size:28 final size:27
Alignment explanation
Indices: 15085538--15085605 Score: 88
Period size: 28 Copynumber: 2.6 Consensus size: 27
15085528 ATTATCGGTA
*
15085538 ATAATAATATATCAAT-ATTACAATAATT
1 ATAATAATATAT-AATAATAACAAT-ATT
15085566 ATAATAATATATAATAATAACAATATT
1 ATAATAATATATAATAATAACAATATT
15085593 -TAATAATAT-TAAT
1 ATAATAATATATAAT
15085606 TTAATTTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
25 4 0.11
26 9 0.24
27 6 0.16
28 19 0.50
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (27 bp):
ATAATAATATATAATAATAACAATATT
Found at i:15085579 original size:16 final size:16
Alignment explanation
Indices: 15085560--15085600 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
15085550 CAATATTACA
* *
15085560 ATAATTATAATAATAT
1 ATAATAATAACAATAT
15085576 ATAATAATAACAATAT
1 ATAATAATAACAATAT
*
15085592 TTAATAATA
1 ATAATAATA
15085601 TTAATTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (16 bp):
ATAATAATAACAATAT
Found at i:15085718 original size:22 final size:21
Alignment explanation
Indices: 15085671--15085718 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
15085661 AATTTATTAC
* *
15085671 TTAAATTAATTATAATAATAT
1 TTAAATTAATAAAAATAATAT
* *
15085692 GTAAATTAAATAAAAATAATTT
1 TTAAATT-AATAAAAATAATAT
15085714 TTAAA
1 TTAAA
15085719 ATATTATTAA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
TTAAATTAATAAAAATAATAT
Found at i:15086154 original size:9 final size:9
Alignment explanation
Indices: 15086140--15086168 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
15086130 CTTGTTTGAT
15086140 ATTATATTA
1 ATTATATTA
15086149 ATTATATTA
1 ATTATATTA
15086158 ATTAT-TTA
1 ATTATATTA
15086166 ATT
1 ATT
15086169 TTTAGTTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 6 0.30
9 14 0.70
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (9 bp):
ATTATATTA
Found at i:15086513 original size:179 final size:181
Alignment explanation
Indices: 15086223--15086699 Score: 480
Period size: 179 Copynumber: 2.6 Consensus size: 181
15086213 GACAACTAAT
* * * * * * * * *
15086223 AAGTAAAAGATTTAAAAAATAAATCTA-TTTATCGAATAAATTCAAATCGTTATGACTATATGAA
1 AAGTAAAAGAATTAAAAAAGAAAT-AAGTTTATCCAACAAGTTCAAATAGTCATGACTATTTGAA
* * * * **
15086287 TAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTTCCGTCCAT
65 TAATTATCTACTTCAAA-TCATTATAAC-ATTTTGTTTTGTCATAAAACAATTGTTTCAATCCAT
** * * * * * *
15086351 ACAAGCTTATTTGGATTAAAATAATATTGATTTATTAATATTTCAACAATTAAT
128 ACAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAA
* *
15086405 AAGTAAAAG-ATTTAAAAA-AAATAAGTTTA-CCAAGCAAGTTTAAATAGTCATGACTATTTGAA
1 AAGTAAAAGAATTAAAAAAGAAATAAGTTTATCCAA-CAAGTTCAAATAGTCATGACTATTTGAA
* * * **
15086467 TAATTATCTACTTCAAATCATTTTAACATTTTGTTTTGTAATAAAACAATTGTTTCAATTCATGT
65 TAATTATCTACTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCAATCCATAC
*
15086532 TAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAA
130 AAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAA
* * ** * * *
15086584 AAGTAAGAGAATTAAAAAAGTAAATATGTTTATTGAACAAGTTCAAATAGTTATAATTATCTT-A
1 AAGTAAAAGAATTAAAAAAG-AAATAAGTTTATCCAACAAGTTCAAATAGTCATGACTAT-TTGA
* ** *
15086648 ATAATTATCTACTTCAAAACATTGCAACCTTTTGTTTTGTCATAAAACAATT
64 ATAATTATCTACTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATT
15086700 TGTTAGCTTA
Statistics
Matches: 243, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
179 88 0.36
180 58 0.24
181 7 0.03
182 86 0.35
183 4 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AAGTAAAAGAATTAAAAAAGAAATAAGTTTATCCAACAAGTTCAAATAGTCATGACTATTTGAAT
AATTATCTACTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCAATCCATACA
AGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCCAAAAATTAAA
Found at i:15086735 original size:171 final size:171
Alignment explanation
Indices: 15086367--15086762 Score: 435
Period size: 182 Copynumber: 2.3 Consensus size: 171
15086357 TTATTTGGAT
* * * *
15086367 TAAAATAATATTGATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAAAAATAAGTT
1 TAAAATAATA-TAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTAAAAAAAAATAAGTT
* * * **
15086432 TACCAAGCAAGTTTAAATAGTCATGACTATTTGAATAATTATCTACTTCAAATCATTTTAACATT
65 TACCAAGCAAGTTCAAATAGTCATAACTATTTGAATAATTATCTACTTCAAAACATTGCAACATT
15086497 TTGTTTTGTAATAAAACAATTGTTTCAATTCATGTTAGCTTATTTCAAA
130 TTGTTTTGTAAT-AAACAA-----TCAATT-ATGTTAGCTTATTTCAAA
* * *
15086546 TAAAATAATACTAATTTATTAATATTCCAAAAATTAAAAAGTAAGAGAATTAAAAAAGTAAATAT
1 TAAAATAATA-TAATTTATTAATATTCCAAAAATTAATAAGTAAAAG-ATTAAAAAA--AAATAA
** * *
15086611 GTTTATTGAA-CAAGTTCAAATAGTTATAATTATCTT-AATAATTATCTACTTCAAAACATTGCA
62 GTTTA-CCAAGCAAGTTCAAATAGTCATAACTAT-TTGAATAATTATCTACTTCAAAACATTGCA
* *
15086674 ACCTTTTGTTTTGTCAT-AA-AA-CAATT-TGTTAGCTTATTTCAAA
125 ACATTTTGTTTTGTAATAAACAATCAATTATGTTAGCTTATTTCAAA
* *
15086717 TAAAATAATATAAATTTATTAATGTTCCAAAAATTTATAAGTAAAA
1 TAAAATAATAT-AATTTATTAATATTCCAAAAATTAATAAGTAAAA
15086763 ATTTTAAAAA
Statistics
Matches: 188, Mismatches: 23, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
170 1 0.01
171 57 0.30
173 5 0.03
179 43 0.23
180 10 0.05
182 68 0.36
183 4 0.02
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (171 bp):
TAAAATAATATAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTAAAAAAAAATAAGTTT
ACCAAGCAAGTTCAAATAGTCATAACTATTTGAATAATTATCTACTTCAAAACATTGCAACATTT
TGTTTTGTAATAAACAATCAATTATGTTAGCTTATTTCAAA
Found at i:15087057 original size:21 final size:22
Alignment explanation
Indices: 15087019--15087073 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 22
15087009 AATTTTGCAA
15087019 TAATTAATATTATCAATTTAGTTAT
1 TAATTAATA-T-T-AATTTAGTTAT
*
15087044 T-ATTAATATTAATTTATTTAT
1 TAATTAATATTAATTTAGTTAT
15087065 TAATTAATA
1 TAATTAATA
15087074 AAAATGATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 11 0.39
22 8 0.29
23 1 0.04
24 7 0.25
25 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (22 bp):
TAATTAATATTAATTTAGTTAT
Found at i:15087238 original size:13 final size:13
Alignment explanation
Indices: 15087222--15087246 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15087212 AACTATATAT
15087222 CATAATAAAAATA
1 CATAATAAAAATA
15087235 CATAATAAAAAT
1 CATAATAAAAAT
15087247 TAATATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (13 bp):
CATAATAAAAATA
Found at i:15087776 original size:25 final size:27
Alignment explanation
Indices: 15087748--15087812 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 27
15087738 TTAAAAAAAT
15087748 AATTATTTAATAATTTAT-GTTAA-TA
1 AATTATTTAATAATTTATAGTTAATTA
*
15087773 AATT-TATTAAT-ATATATAGTTAATTA
1 AATTAT-TTAATAATTTATAGTTAATTA
*
15087799 AA-TATTTATTAATT
1 AATTATTTAATAATT
15087813 AAATAAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
24 6 0.19
25 19 0.59
26 7 0.22
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
AATTATTTAATAATTTATAGTTAATTA
Found at i:15087783 original size:22 final size:27
Alignment explanation
Indices: 15087751--15087813 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 27
15087741 AAAAAATAAT
*
15087751 TATTTAATAATT-TAT-GTTAA-T-AA
1 TATTTATTAATTATATAGTTAATTAAA
15087774 -ATTTATTAATATATATAGTTAATTAAA
1 TATTTATTAAT-TATATAGTTAATTAAA
15087801 TATTTATTAATTA
1 TATTTATTAATTA
15087814 AATAAGAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 9 0.27
23 1 0.03
24 3 0.09
25 5 0.15
26 1 0.03
27 4 0.12
28 10 0.30
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TATTTATTAATTATATAGTTAATTAAA
Found at i:15087812 original size:15 final size:16
Alignment explanation
Indices: 15087778--15087817 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
15087768 TAATAAATTT
15087778 ATTAATATATATAGTTA
1 ATTAA-ATATATAGTTA
*
15087795 ATTAAATATTTA-TTA
1 ATTAAATATATAGTTA
15087810 ATTAAATA
1 ATTAAATA
15087818 AGAATGAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 11 0.50
16 6 0.27
17 5 0.23
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTAAATATATAGTTA
Found at i:15088036 original size:15 final size:15
Alignment explanation
Indices: 15088005--15088050 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
15087995 TAAAATTGTT
*
15088005 ATATTAAA-AAATATA
1 ATATTAAATATAT-TA
*
15088020 ATATTAATTATATTA
1 ATATTAAATATATTA
15088035 ATATTAAATATATTA
1 ATATTAAATATATTA
15088050 A
1 A
15088051 ATTGTTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 24 0.89
16 3 0.11
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATTAAATATATTA
Found at i:15088118 original size:32 final size:33
Alignment explanation
Indices: 15088071--15088133 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
15088061 AATTATTGAT
15088071 AATATAATTAATAGTT-TATAAATATAATTATA
1 AATATAATTAATAGTTATATAAATATAATTATA
* * * *
15088103 AATATTATTAGTAGTTATTTAATTATAATTA
1 AATATAATTAATAGTTATATAAATATAATTA
15088134 AGTATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 14 0.54
33 12 0.46
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (33 bp):
AATATAATTAATAGTTATATAAATATAATTATA
Found at i:15088919 original size:22 final size:19
Alignment explanation
Indices: 15088884--15088930 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
15088874 CAATAATAGG
15088884 ATAATAATATTAATAAGTA
1 ATAATAATATTAATAAGTA
*
15088903 TATAATATATTATTAATAATTA
1 -ATAATA-A-TATTAATAAGTA
15088925 ATAATA
1 ATAATA
15088931 CAAATTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 6 0.25
21 7 0.29
22 11 0.46
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATAATAATATTAATAAGTA
Found at i:15089921 original size:14 final size:14
Alignment explanation
Indices: 15089902--15089928 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15089892 TTTACTTATA
15089902 ATTATATTAATATT
1 ATTATATTAATATT
15089916 ATTATATTAATAT
1 ATTATATTAATAT
15089929 GAATTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTATATTAATATT
Found at i:15090046 original size:22 final size:21
Alignment explanation
Indices: 15089999--15090039 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15089989 ATTAATTGAT
*
15089999 TTAT-AATAATTATTAATATA
1 TTATAAATAAATATTAATATA
15090019 TTATAAATAAATAGTTAATAT
1 TTATAAATAAATA-TTAATAT
15090040 TATATAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TTATAAATAAATATTAATATA
Found at i:15090696 original size:41 final size:41
Alignment explanation
Indices: 15090554--15090722 Score: 198
Period size: 41 Copynumber: 4.2 Consensus size: 41
15090544 TTGAAAAAAT
* * * *
15090554 AAATAAAATGCTCATTTAAATAGAGGCTCAACAACTTTGAA
1 AAATAAAATGCTCCTCTAAACAGAGGCACAACAACTTTGAA
* * * * * * *
15090595 AAATAAAATACACTTCCAAA-AAAAGCACCACAACTTTGAA
1 AAATAAAATGCTCCTCTAAACAGAGGCACAACAACTTTGAA
*
15090635 AAAT-AAATGCTCCTCTAAACAGAGGCACCACAACTTTGAA
1 AAATAAAATGCTCCTCTAAACAGAGGCACAACAACTTTGAA
* *
15090675 AAATAAAATGCTCCTCTAAACATAGGCATAACAACTTTGAA
1 AAATAAAATGCTCCTCTAAACAGAGGCACAACAACTTTGAA
15090716 AAATAAA
1 AAATAAA
15090723 GGTTCATCGA
Statistics
Matches: 108, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 11 0.10
40 42 0.39
41 55 0.51
ACGTcount: A:0.49, C:0.20, G:0.09, T:0.22
Consensus pattern (41 bp):
AAATAAAATGCTCCTCTAAACAGAGGCACAACAACTTTGAA
Found at i:15091097 original size:18 final size:16
Alignment explanation
Indices: 15091063--15091113 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
15091053 GTATACAATT
15091063 TATTATATAATTTATA
1 TATTATATAATTTATA
*
15091079 TATTTTATAATTGTCATA
1 TATTATATAATT-T-ATA
*
15091097 TAATATATTAA-TTATA
1 TATTATA-TAATTTATA
15091113 T
1 T
15091114 GATATACAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 15 0.52
17 2 0.07
18 9 0.31
19 3 0.10
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (16 bp):
TATTATATAATTTATA
Found at i:15091240 original size:18 final size:18
Alignment explanation
Indices: 15091210--15091255 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
15091200 TTAAATATAT
* *
15091210 AATAAATAA-TTCAATTA
1 AATATATAATTTCAAATA
*
15091227 TATATATAATTTCAAATA
1 AATATATAATTTCAAATA
15091245 AATATATAATT
1 AATATATAATT
15091256 ATTCTATATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (18 bp):
AATATATAATTTCAAATA
Found at i:15091735 original size:18 final size:18
Alignment explanation
Indices: 15091712--15091746 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15091702 ATTAGCTTAG
* *
15091712 TATTATTTTATAATTAAT
1 TATTATATTACAATTAAT
15091730 TATTATATTACAATTAA
1 TATTATATTACAATTAA
15091747 CTATATATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
TATTATATTACAATTAAT
Found at i:15092338 original size:19 final size:19
Alignment explanation
Indices: 15092316--15092353 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
15092306 AGTATTTTTT
15092316 TAAT-TAATTAATATTTATA
1 TAATATAATT-ATATTTATA
*
15092335 TAATATCATTATATTTATA
1 TAATATAATTATATTTATA
15092354 ATTATGTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (19 bp):
TAATATAATTATATTTATA
Found at i:15093093 original size:20 final size:19
Alignment explanation
Indices: 15093061--15093101 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
15093051 TTAAATAGTT
*
15093061 TTTAATAAATTAATACTAA
1 TTTAATAAATTAATAATAA
*
15093080 TTTACATAATTTAATAATAA
1 TTTA-ATAAATTAATAATAA
15093100 TT
1 TT
15093102 ATATATTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTAATAAATTAATAATAA
Found at i:15093115 original size:17 final size:17
Alignment explanation
Indices: 15093095--15093155 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 17
15093085 ATAATTTAAT
*
15093095 AATAATTATATATTATG
1 AATAATTATATATTATA
*
15093112 AATAGTTACTTTATAATTATA
1 AATAATTA---TAT-ATTATA
15093133 AATAATTATATATT-TA
1 AATAATTATATATTATA
*
15093149 TATAATT
1 AATAATT
15093156 TATTAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
16 8 0.22
17 10 0.28
18 3 0.08
20 3 0.08
21 12 0.33
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (17 bp):
AATAATTATATATTATA
Found at i:15093347 original size:17 final size:17
Alignment explanation
Indices: 15093316--15093349 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15093306 AAATAATTAA
**
15093316 TTATTATAATGTTATAT
1 TTATTATAACATTATAT
15093333 TTATTATAACATTATAT
1 TTATTATAACATTATAT
15093350 AAATATCCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
TTATTATAACATTATAT
Found at i:15093437 original size:19 final size:19
Alignment explanation
Indices: 15093363--15093439 Score: 66
Period size: 19 Copynumber: 3.9 Consensus size: 19
15093353 TATCCAATAT
* *
15093363 TTAATTTATATAAAATTATAA
1 TTAAATTAT-TAATATTA-AA
* *
15093384 TTATATTATTATTATTTAAA
1 TTAAATTATTAATA-TTAAA
*
15093404 TTAAATTA-TATATATTAAT
1 TTAAATTATTA-ATATTAAA
15093423 TTAAATTATTAATATTA
1 TTAAATTATTAATATTA
15093440 TTAGTTAATA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
19 20 0.43
20 16 0.35
21 10 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAAATTATTAATATTAAA
Found at i:15093455 original size:18 final size:18
Alignment explanation
Indices: 15093300--15093474 Score: 71
Period size: 18 Copynumber: 9.6 Consensus size: 18
15093290 GTTAAATTAA
* *
15093300 TATATAAAATAAT-TAAT
1 TATATAATATTATATAAT
*
15093317 TATTATAATGTTATAT--T
1 TA-TATAATATTATATAAT
* *
15093334 TATTATAACATTATATAAA
1 TA-TATAATATTATATAAT
** *
15093353 TATCCAATATT-TA-ATT
1 TATATAATATTATATAAT
*
15093369 TATATAA-AAT-TATAAT
1 TATATAATATTATATAAT
* *
15093385 TATATTATTATTATTTAAAT
1 TATA-TAATATTATAT-AAT
*
15093405 TAAATTATATATATTAATTTAAAT
1 T--A-TATA-ATATT-ATAT-AAT
*
15093429 TAT-TAATATTAT-TAGT
1 TATATAATATTATATAAT
15093445 TAATATAATATTATATAAT
1 T-ATATAATATTATATAAT
15093464 TATATAATATT
1 TATATAATATT
15093475 TAACAGTATA
Statistics
Matches: 120, Mismatches: 21, Indels: 33
0.69 0.12 0.19
Matches are distributed among these distances:
15 4 0.03
16 15 0.12
17 24 0.20
18 37 0.31
19 14 0.12
20 6 0.05
21 1 0.01
22 4 0.03
23 6 0.05
24 9 0.08
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (18 bp):
TATATAATATTATATAAT
Found at i:15093945 original size:184 final size:179
Alignment explanation
Indices: 15093615--15094180 Score: 522
Period size: 184 Copynumber: 3.1 Consensus size: 179
15093605 ATTAAACAAT
* * * * * * *
15093615 TAATAATTTCAAAAATTAATAAGTAAGAG-TTTAAAAAATGAA-TCTGTTTATCGAGCTAGTTTA
1 TAAT-ATTTCAAAAATTAATAAATAAGAGAATTAAAAAAT-AATTCTGTTTACCGAACCAATTCA
* * * * * * * **
15093678 AATAGTTATGACTATTTAAACAATTCTATAATT-CATATCATTATAACCATTTGTTTTGTCATAA
64 AAAAATTAT-ACTATATGAACAATTATAT-ATTCCAAATCATTATTACTTTTTGTTTTGTCATAA
*
15093742 AATAATTATTTCTATTCATACAAGCTTATTCAAAATAAAATAATACGAATCTAA
127 AACAATT-TTTCTATTCATACAAGCTTATTCAAAATAAAATAATACGAATCTAA
* * * *
15093796 TAATA-TTCAAAAAATTAATAACTAAGGGAATTAAAAAATTAATTGT-TTTGCCGAACCAATTCA
1 TAATATTTC-AAAAATTAATAAATAAGAGAATTAAAAAA-TAATTCTGTTTACCGAACCAATTCA
* * **
15093859 AAATAGTTA-AGGCTATATGAACAA-TATCTAATTCCAAATTGTTA-TACCTTTATT-TCTTTGT
64 AAA-AATTATA--CTATATGAACAATTATAT-ATTCCAAATCATTATTA-CTTT-TTGT-TTTGT
* * * * * * **
15093920 CCATAAAACAATTTTCTCAATTCATACTAGCTTATTCGAAATAAAATAAAATGAATTTGT
122 -CATAAAACAATTTT-TCTATTCATACAAGCTTATTCAAAATAAAATAATACGAATCTAA
* *
15093980 TAATATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAATTCTGTTTACCTAACCAATTCAAA
1 TAATATTTCAAAAATTAATAAATAAGAGAATTAAAAAATAATTCTGTTTACCGAACCAATTCAAA
* *
15094045 AAATTATACTATTTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATAAAACA
66 AAATTATACTATATGAACAATTATATATTCCAAATCATTATTACTTTTTGTTTTGTCATAAAAC-
* * * * *
15094110 AATGTTTT-TATTCATATAAGTTTATTCAGAATAAAGTAATACTAATCTAA
130 AAT-TTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACGAATCTAA
15094160 TAATATTTCAAAAATTAATAA
1 TAATATTTCAAAAATTAATAA
15094181 GTGATTTAAA
Statistics
Matches: 309, Mismatches: 55, Indels: 43
0.76 0.14 0.11
Matches are distributed among these distances:
179 3 0.01
180 77 0.25
181 46 0.15
182 58 0.19
183 25 0.08
184 97 0.31
185 3 0.01
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (179 bp):
TAATATTTCAAAAATTAATAAATAAGAGAATTAAAAAATAATTCTGTTTACCGAACCAATTCAAA
AAATTATACTATATGAACAATTATATATTCCAAATCATTATTACTTTTTGTTTTGTCATAAAACA
ATTTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACGAATCTAA
Found at i:15094180 original size:18 final size:21
Alignment explanation
Indices: 15094152--15094199 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
15094142 AAAGTAATAC
*
15094152 TAATCTAATAA-T-ATTTCAAA
1 TAAT-TAATAAGTGATTTAAAA
15094172 -AATTAATAAGTGATTTAAAA
1 TAATTAATAAGTGATTTAAAA
15094192 TAATTAAT
1 TAATTAAT
15094200 TATAATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 6 0.25
19 4 0.17
20 7 0.29
21 7 0.29
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (21 bp):
TAATTAATAAGTGATTTAAAA
Found at i:15094198 original size:21 final size:19
Alignment explanation
Indices: 15094152--15094209 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
15094142 AAAGTAATAC
*
15094152 TAATCTAATAATATTTCAAA
1 TAAT-TAATAATATTTAAAA
15094172 -AATTAATAAGTGATTTAAAA
1 TAATTAATAA-T-ATTTAAAA
* *
15094192 TAATTAATTATAATTAAA
1 TAATTAATAATATTTAAA
15094210 TTATTATATT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
18 6 0.19
19 10 0.31
20 8 0.25
21 8 0.25
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (19 bp):
TAATTAATAATATTTAAAA
Found at i:15095063 original size:26 final size:26
Alignment explanation
Indices: 15095034--15095088 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
15095024 TTATAATAAC
* *
15095034 TATA-AATAATAAATAATATTTTATGT
1 TATATAATAAT-AATAATATTATATAT
*
15095060 TATATAATTATAATAATATTATATAT
1 TATATAATAATAATAATATTATATAT
15095086 TAT
1 TAT
15095089 GAATCTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
TATATAATAATAATAATATTATATAT
Found at i:15095148 original size:14 final size:16
Alignment explanation
Indices: 15095119--15095170 Score: 60
Period size: 14 Copynumber: 3.6 Consensus size: 16
15095109 TTTGTTTTAT
15095119 TAATTATTTAAATATA
1 TAATTATTTAAATATA
15095135 TAATTA-TT-AATATA
1 TAATTATTTAAATATA
*
15095149 TAATT-TTTATAT-TA
1 TAATTATTTAAATATA
15095163 -AATTATTT
1 TAATTATTT
15095171 TATTAATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
13 4 0.12
14 18 0.56
15 4 0.12
16 6 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TAATTATTTAAATATA
Found at i:15095230 original size:10 final size:11
Alignment explanation
Indices: 15095212--15095250 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
15095202 AGAGATATAC
15095212 TATAAATTAAT
1 TATAAATTAAT
15095223 TA-AAATTAAT
1 TATAAATTAAT
15095233 TATAAATATTAAT
1 TAT-AA-ATTAAT
15095246 TATAA
1 TATAA
15095251 TATATTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.40
11 2 0.08
12 4 0.16
13 9 0.36
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:15095245 original size:13 final size:13
Alignment explanation
Indices: 15095223--15095262 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
15095213 ATAAATTAAT
15095223 TAAA-ATTAATTA
1 TAAATATTAATTA
15095235 TAAATATTAATTA
1 TAAATATTAATTA
15095248 TAATATATT-ATTA
1 TAA-ATATTAATTA
15095261 TA
1 TA
15095263 TTATATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.15
13 17 0.65
14 5 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAATATTAATTA
Found at i:15095257 original size:23 final size:22
Alignment explanation
Indices: 15095206--15095276 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 22
15095196 AATTATAGAG
* *
15095206 ATATACTATAA-ATTAATTAAA
1 ATATATTATAATATTAATTATA
15095227 AT-TAATTATAAATATTAATTATA
1 ATAT-ATTAT-AATATTAATTATA
*
15095250 ATATATTATTATATTATATTAT-
1 ATATATTATAATATTA-ATTATA
15095272 ATATA
1 ATATA
15095277 AATTGTTAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
20 1 0.02
21 6 0.14
22 13 0.31
23 21 0.50
24 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATATTATAATATTAATTATA
Found at i:15095267 original size:13 final size:13
Alignment explanation
Indices: 15095238--15095275 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
15095228 TTAATTATAA
*
15095238 ATATTAATTATAAT
1 ATATT-ATTATATT
15095252 ATATTATTATATT
1 ATATTATTATATT
15095265 ATATTA-TATAT
1 ATATTATTATAT
15095276 AAATTGTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 5 0.22
13 13 0.57
14 5 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATTATTATATT
Found at i:15095917 original size:19 final size:18
Alignment explanation
Indices: 15095840--15095917 Score: 59
Period size: 19 Copynumber: 4.1 Consensus size: 18
15095830 TGAAATTATT
*
15095840 TTATTTATTATAATAATAA
1 TTATTTATTATTAT-ATAA
* *
15095859 ATATTTAATTATTAAATATA
1 TTATTT-ATTATTATATA-A
* *
15095879 TTATATATTAAGTATA-AA
1 TTATTTATT-ATTATATAA
15095897 TTATTATATTATTATATAA
1 TTATT-TATTATTATATAA
15095916 TT
1 TT
15095918 TAACAATATA
Statistics
Matches: 45, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
18 10 0.22
19 20 0.44
20 15 0.33
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (18 bp):
TTATTTATTATTATATAA
Found at i:15096353 original size:24 final size:25
Alignment explanation
Indices: 15096297--15096353 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 25
15096287 AATAATTAGC
* *
15096297 TTAATT-ATATATTAGATATTTATT
1 TTAATTAATATATCAGATATTTAAT
* *
15096321 TTAACTAATATATCATA-ATTTAAT
1 TTAATTAATATATCAGATATTTAAT
15096345 TTAATTAAT
1 TTAATTAAT
15096354 TATAATTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 19 0.70
25 8 0.30
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (25 bp):
TTAATTAATATATCAGATATTTAAT
Found at i:15096359 original size:15 final size:15
Alignment explanation
Indices: 15096336--15096372 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
15096326 TAATATATCA
15096336 TAATT-TAATTTAAT
1 TAATTATAATTTAAT
15096350 TAATTATAATTTAAT
1 TAATTATAATTTAAT
*
15096365 TACTTATA
1 TAATTATA
15096373 CCAAATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (15 bp):
TAATTATAATTTAAT
Found at i:15096538 original size:16 final size:15
Alignment explanation
Indices: 15096503--15096582 Score: 60
Period size: 16 Copynumber: 5.3 Consensus size: 15
15096493 ATCTAATAGC
15096503 TTAATT-ATATTATAA
1 TTAATTAATA-TATAA
*
15096518 ATAATTAATAGTATAA
1 TTAATTAATA-TATAA
* *
15096534 TTAATAAATATTAAAA
1 TTAATTAATA-TATAA
15096550 TT-ATTAATATATGAA
1 TTAATTAATATAT-AA
15096565 -T-ATTAATATATAA
1 TTAATTAATATATAA
*
15096578 ATAAT
1 TTAAT
15096583 ATAGGTTGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
13 2 0.04
14 14 0.26
15 15 0.28
16 22 0.42
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (15 bp):
TTAATTAATATATAA
Found at i:15096557 original size:23 final size:23
Alignment explanation
Indices: 15096506--15096570 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 23
15096496 TAATAGCTTA
*
15096506 ATTATATT-ATAAATAATTAATAGT
1 ATTA-ATTAATAAAT-ATTAAAAGT
*
15096530 A-TAATTAATAAATATTAAAATT
1 ATTAATTAATAAATATTAAAAGT
*
15096552 ATTAA-TATATGAATATTAA
1 ATTAATTA-ATAAATATTAA
15096571 TATATAAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 13 0.37
23 21 0.60
24 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (23 bp):
ATTAATTAATAAATATTAAAAGT
Done.