Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 85 of 129
Found at i:15134808 original size:18 final size:18
Alignment explanation
Indices: 15134782--15134816 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15134772 AATATATTAT
*
15134782 AAATTATTATAATTATAA
1 AAATAATTATAATTATAA
*
15134800 AAATAATTATTATTATA
1 AAATAATTATAATTATA
15134817 CATTATTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAATTATAATTATAA
Found at i:15134974 original size:22 final size:21
Alignment explanation
Indices: 15134923--15134977 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
15134913 AATATATCAT
*
15134923 TTAATA-ATTATTTTAATAAA
1 TTAATATATTATTTTAAGAAA
*
15134943 TT-ATATTATTATATTTTAGAAA
1 TTAATA-TATTAT-TTTAAGAAA
15134965 TTAATATATTATT
1 TTAATATATTATT
15134978 AAATAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 3 0.10
20 2 0.07
21 6 0.21
22 15 0.52
23 3 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAATATATTATTTTAAGAAA
Found at i:15135044 original size:35 final size:34
Alignment explanation
Indices: 15134964--15135059 Score: 88
Period size: 35 Copynumber: 2.7 Consensus size: 34
15134954 TATTTTAGAA
*
15134964 ATTAATATATT-ATTAAATAATAATTATTTACAAT
1 ATTAATATATTAATTATAT-ATAATTATTTACAAT
* *
15134998 ATTATAAATATTAATTATATATAATTAGTTTATAAGT
1 ATTA-ATATATTAATTATATATAATTA-TTTACAA-T
15135035 A-TAATATATTTACATTATATTATAA
1 ATTAATATA-TTA-ATTATA-TATAA
15135060 GATAATAATT
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
34 4 0.08
35 17 0.33
36 17 0.33
37 8 0.16
38 5 0.10
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (34 bp):
ATTAATATATTAATTATATATAATTATTTACAAT
Found at i:15135534 original size:12 final size:12
Alignment explanation
Indices: 15135493--15135664 Score: 66
Period size: 12 Copynumber: 14.6 Consensus size: 12
15135483 AAATATCATT
*
15135493 ATATAATAATTA
1 ATATTATAATTA
*
15135505 ATAATATAAATTCAA
1 ATATTAT-AATT--A
15135520 ATATTATAATTA
1 ATATTATAATTA
*
15135532 ATA-TACTTTATTA
1 ATATTA--TAATTA
* **
15135545 ATAGTTACAAACAA
1 ATA-TTA-TAATTA
15135559 TATATTATAATTA
1 -ATATTATAATTA
*
15135572 ATATTATAATCA
1 ATATTATAATTA
15135584 AT-TT-TAATT-
1 ATATTATAATTA
15135593 -TATT-TAA-TA
1 ATATTATAATTA
15135602 ATATTAT--TTA
1 ATATTATAATTA
15135612 A-ATTATTAATTA
1 ATATTA-TAATTA
*
15135624 ATA-TATCGATTA
1 ATATTAT-AATTA
15135636 ATATTATTAA-TA
1 ATATTA-TAATTA
*
15135648 ATA-AAT-ATTA
1 ATATTATAATTA
15135658 ATATTAT
1 ATATTAT
15135665 TAATATTAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 45
0.66 0.10 0.25
Matches are distributed among these distances:
8 2 0.02
9 10 0.08
10 18 0.15
11 9 0.08
12 40 0.33
13 19 0.16
14 10 0.08
15 12 0.10
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (12 bp):
ATATTATAATTA
Found at i:15135585 original size:26 final size:25
Alignment explanation
Indices: 15135519--15135585 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
15135509 TATAAATTCA
*
15135519 AATATTATAATTAATATACTTTATT
1 AATATTATAATCAATATACTTTATT
* *
15135544 AATAGTTACAAACAATATA-TTATAATT
1 AATA-TTATAATCAATATACTT-T-ATT
15135571 AATATTATAATCAAT
1 AATATTATAATCAAT
15135586 TTTAATTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
25 6 0.18
26 21 0.62
27 7 0.21
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.43
Consensus pattern (25 bp):
AATATTATAATCAATATACTTTATT
Found at i:15135611 original size:22 final size:22
Alignment explanation
Indices: 15135586--15135627 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
15135576 TATAATCAAT
*
15135586 TTTAATTTATTTAA-TAATATTA
1 TTTAAATTA-TTAATTAATATTA
15135608 TTTAAATTATTAATTAATAT
1 TTTAAATTATTAATTAATAT
15135628 ATCGATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTAAATTATTAATTAATATTA
Found at i:15135649 original size:28 final size:25
Alignment explanation
Indices: 15135596--15135681 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 25
15135586 TTTAATTTAT
*
15135596 TTAATAATATT-AT-TTAAATTATTAA
1 TTAATAATATTAATATT--ATTAATAA
15135621 TTAATATATCGATTAATATTATTAATAA
1 TTAATA-AT--ATTAATATTATTAATAA
15135649 -T-A-AATATTAATATTATTAAT-A
1 TTAATAATATTAATATTATTAATAA
15135670 TTAATAACTATT
1 TTAATAA-TATT
15135682 GTAATAAATC
Statistics
Matches: 51, Mismatches: 1, Indels: 18
0.73 0.01 0.26
Matches are distributed among these distances:
21 1 0.02
22 16 0.31
23 1 0.02
24 4 0.08
25 11 0.22
26 3 0.06
27 1 0.02
28 10 0.20
29 2 0.04
30 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (25 bp):
TTAATAATATTAATATTATTAATAA
Found at i:15136926 original size:21 final size:21
Alignment explanation
Indices: 15136875--15136934 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
15136865 TATCTATATT
* *
15136875 ATAATAAAATA-ATATTATAA
1 ATAATAATATACATATTACAA
*
15136895 CTAATTAATATACATATTACAA
1 ATAA-TAATATACATATTACAA
15136917 ATAATAATAT-CAATATTA
1 ATAATAATATAC-ATATTA
15136935 GGTATAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 4 0.12
21 18 0.55
22 11 0.33
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (21 bp):
ATAATAATATACATATTACAA
Found at i:15137170 original size:20 final size:19
Alignment explanation
Indices: 15137138--15137178 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
15137128 TTAAATATTT
*
15137138 TTTAATAAATTAATACTAA
1 TTTAATAAATTAATAATAA
*
15137157 TTTACATAATTTAATAATAA
1 TTTA-ATAAATTAATAATAA
15137177 TT
1 TT
15137179 ATATATTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTAATAAATTAATAATAA
Found at i:15137192 original size:17 final size:17
Alignment explanation
Indices: 15137172--15137232 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 17
15137162 ATAATTTAAT
*
15137172 AATAATTATATATTATG
1 AATAATTATATATTATA
*
15137189 AATAGTTACTTTATAATTATA
1 AATAATTA---TAT-ATTATA
15137210 AATAATTATATATT-TA
1 AATAATTATATATTATA
*
15137226 TATAATT
1 AATAATT
15137233 TATTAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
16 8 0.22
17 10 0.28
18 3 0.08
20 3 0.08
21 12 0.33
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (17 bp):
AATAATTATATATTATA
Found at i:15137431 original size:17 final size:17
Alignment explanation
Indices: 15137400--15137433 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15137390 AAATAATTAA
**
15137400 TTATTATAATGTTATAT
1 TTATTATAACATTATAT
15137417 TTATTATAACATTATAT
1 TTATTATAACATTATAT
15137434 AAATATCCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (17 bp):
TTATTATAACATTATAT
Found at i:15137489 original size:20 final size:21
Alignment explanation
Indices: 15137447--15137527 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 21
15137437 TATCCAATAT
* *
15137447 TTAATTTA-TATAAAATTATAA
1 TTAAATTATTATAATATTA-AA
*
15137468 TTATATTATTATAAT-TTAAA
1 TTAAATTATTATAATATTAAA
* *
15137488 TTAAATTA-TATAGTATTAAT
1 TTAAATTATTATAATATTAAA
*
15137508 TTAAATTATTAATATTATTA
1 TTAAATTATT-ATAATATTA
15137528 GTTAATATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
19 5 0.10
20 21 0.43
21 10 0.20
22 13 0.27
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (21 bp):
TTAAATTATTATAATATTAAA
Found at i:15137507 original size:25 final size:26
Alignment explanation
Indices: 15137459--15137539 Score: 89
Period size: 25 Copynumber: 3.2 Consensus size: 26
15137449 AATTTATATA
*
15137459 AAATTATAATTATATTATTATAATTT
1 AAATTATAATTATATTAGTATAATTT
15137485 AAATTA-AATTATA-TAGTATTAATTT
1 AAATTATAATTATATTAGTA-TAATTT
*
15137510 AAATTATTAA-TATTATTAGT-TAATAT
1 AAATTA-TAATTA-TATTAGTATAATTT
15137536 AAAT
1 AAAT
15137540 ATTATATATT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
24 4 0.08
25 19 0.40
26 17 0.35
27 4 0.08
28 4 0.08
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
AAATTATAATTATATTAGTATAATTT
Found at i:15138238 original size:181 final size:179
Alignment explanation
Indices: 15137682--15138239 Score: 581
Period size: 180 Copynumber: 3.1 Consensus size: 179
15137672 ACAATTAACA
* * * * * *
15137682 ATTTCAAAAATTAATAAGTAAGAG-TTTAAAAAATAAATCTATTTACCGAATCAGTTTAAATAGT
1 ATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAATTCAAATAGT
* * * * *
15137746 TATGACTATTTAAACAATTCTATACTTCATATCATTATAACTTTTTATTTTATCATAAAAC-AAT
66 TAT-ACTATTTAAACAATTATATAATTCAAATCATTATAACTTTTTGTTTTGTCATAAAACAAAT
* * * *
15137810 TATTTCTATTCATACAAGTTTATTCAAAATAAAACAATATGAATCTAATAAT
130 T-TTT-TATTCATATAAGTTTATTCGAAATAAAATAATATGAATCTATTAAT
* * *
15137862 A-TTCAAAAAATTAATAACTAAGGGATTTAAAAAATAAATTTGTTTGCCGAACCAATTCAAATAG
1 ATTTC-AAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAATTCAAATAG
* * * * * ** * * *
15137926 TTAAAACTATATGAATAATTATCTAATTCAAATTGTTATGAC-CTTTGTCTTGTCATAAAAC-AA
65 TT-ATACTATTTAAACAATTATATAATTCAAATCATTATAACTTTTTGTTTTGTCATAAAACAAA
* * * * *
15137989 TTTTCTCAATTCATACT-AGATTATTCGAAATAAAATAAAATGAATTTGTTAAT
129 TTTT-T-TATTCATA-TAAGTTTATTCGAAATAAAATAATATGAATCTATTAAT
* * * *
15138042 ATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAATTTTGTTTACCTAACCAATTCAAAAAAT
1 ATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAATTCAAATAGT
* * *
15138107 TATACTATTTAAACAGTTATATATTTTCAAATCATTATTACTTTTTGTTTTGTCATAAAACAAAT
66 TATACTATTTAAACAATTATATA-ATTCAAATCATTATAACTTTTTGTTTTGTCATAAAACAAAT
* *
15138172 GTTTTTGTTCATATAAGTTTATTCGAAATAAAGTAATACT-AATCTATTAAT
130 -TTTTTATTCATATAAGTTTATTCGAAATAAAATAATA-TGAATCTATTAAT
*
15138223 ATTTTAAAAATTAATAA
1 ATTTCAAAAATTAATAA
15138240 GTGATTTAAA
Statistics
Matches: 307, Mismatches: 59, Indels: 23
0.79 0.15 0.06
Matches are distributed among these distances:
179 21 0.07
180 144 0.47
181 133 0.43
182 6 0.02
183 3 0.01
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.39
Consensus pattern (179 bp):
ATTTCAAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAATTCAAATAGT
TATACTATTTAAACAATTATATAATTCAAATCATTATAACTTTTTGTTTTGTCATAAAACAAATT
TTTTATTCATATAAGTTTATTCGAAATAAAATAATATGAATCTATTAAT
Found at i:15138896 original size:13 final size:13
Alignment explanation
Indices: 15138878--15138912 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
15138868 TATCAATACT
15138878 TAATATTAATTAG
1 TAATATTAATTAG
15138891 TAATATTAA-TAG
1 TAATATTAATTAG
15138903 T-ATATTAATT
1 TAATATTAATT
15138913 CAAATATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 7 0.33
12 5 0.24
13 9 0.43
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (13 bp):
TAATATTAATTAG
Found at i:15138909 original size:20 final size:21
Alignment explanation
Indices: 15138863--15138909 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
15138853 TATAATTCAA
*
15138863 TATATTATCAATACTTAATAT
1 TATATTATCAATACTTAATAG
15138884 TA-ATTAGT-AATA-TTAATAG
1 TATATTA-TCAATACTTAATAG
15138903 TATATTA
1 TATATTA
15138910 ATTCAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 8 0.35
20 12 0.52
21 3 0.13
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (21 bp):
TATATTATCAATACTTAATAG
Found at i:15139124 original size:43 final size:43
Alignment explanation
Indices: 15139051--15139157 Score: 101
Period size: 43 Copynumber: 2.4 Consensus size: 43
15139041 ATATATAACA
** * *
15139051 TTATAATATATATAATATTTTTATAAAATAACTTAATACTATT-T
1 TTATAATAT-TATAATAACTATATAAAATAA-ATAATACTATTGT
*
15139095 TTATAATATTATAATAACTATA-AATAATAAATAATATTATTGT
1 TTATAATATTATAATAACTATATAA-AATAAATAATACTATTGT
15139138 TTATTATATAATTATAATAA
1 TTA-TA-AT-ATTATAATAA
15139158 TATTATATAT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
42 11 0.21
43 19 0.36
44 11 0.21
45 2 0.04
46 10 0.19
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.48
Consensus pattern (43 bp):
TTATAATATTATAATAACTATATAAAATAAATAATACTATTGT
Found at i:15139163 original size:19 final size:18
Alignment explanation
Indices: 15139139--15139175 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
15139129 TATTATTGTT
15139139 TATTATATAATTATAATAA
1 TATTATAT-ATTATAATAA
*
15139158 TATTATATATTGTAATAA
1 TATTATATATTATAATAA
15139176 ACAATAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
TATTATATATTATAATAA
Found at i:15139429 original size:27 final size:27
Alignment explanation
Indices: 15139398--15139457 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
15139388 ATTTTCTTCC
*
15139398 AAAACTGAAATTCTTCAAGTTTTGGCA
1 AAAACCGAAATTCTTCAAGTTTTGGCA
15139425 AAAACCGAAATTCTTCAAGTTTTGGCA
1 AAAACCGAAATTCTTCAAGTTTTGGCA
15139452 AAAACC
1 AAAACC
15139458 AATCGATCCC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
AAAACCGAAATTCTTCAAGTTTTGGCA
Found at i:15139708 original size:21 final size:19
Alignment explanation
Indices: 15139678--15139749 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 19
15139668 ATCCAAAAGA
*
15139678 GGGATTGATCCCTTCACATAG
1 GGGATCGATCCCTT-A-ATAG
* *
15139699 GGGATCGATCACCTAAATAA
1 GGGATCGATC-CCTTAATAG
*
15139719 TGGATCGATCCCTTGAATGAG
1 GGGATCGATCCCTT-AAT-AG
15139740 GGGATCGATC
1 GGGATCGATC
15139750 GGGTAAGGCA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 3 0.07
20 15 0.37
21 20 0.49
22 3 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (19 bp):
GGGATCGATCCCTTAATAG
Found at i:15147921 original size:26 final size:26
Alignment explanation
Indices: 15147892--15147944 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15147882 TTATATTGTT
*
15147892 ATTCAGAGGGAG-TTTTTTTTCATAAA
1 ATTCAGAGGGAGCTTGTTTTTCA-AAA
*
15147918 ATTCAGTGGGAGCTTGTTTTTCAAAA
1 ATTCAGAGGGAGCTTGTTTTTCAAAA
15147944 A
1 A
15147945 GAAAAATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTCAGAGGGAGCTTGTTTTTCAAAA
Found at i:15149366 original size:14 final size:16
Alignment explanation
Indices: 15149333--15149384 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 16
15149323 TTTGTTTTAT
15149333 TAATTATTTAAATATA
1 TAATTATTTAAATATA
*
15149349 TAATTA-TT-AATATG
1 TAATTATTTAAATATA
*
15149363 TAATT-TTTATAT-TA
1 TAATTATTTAAATATA
15149377 -AATTATTT
1 TAATTATTT
15149385 TATTAATAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
13 4 0.13
14 16 0.53
15 4 0.13
16 6 0.20
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
TAATTATTTAAATATA
Found at i:15149656 original size:8 final size:8
Alignment explanation
Indices: 15149643--15149671 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
15149633 AATTAAATAT
15149643 TATTTTAA
1 TATTTTAA
15149651 TATTTTAA
1 TATTTTAA
15149659 TATTTTAA
1 TATTTTAA
15149667 TATTT
1 TATTT
15149672 ATATTATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TATTTTAA
Found at i:15150083 original size:26 final size:25
Alignment explanation
Indices: 15150031--15150093 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 25
15150021 AATTCAATTT
** *
15150031 ATATATTAGTTATAAATTTATTGTTC
1 ATATATTA-TTATAAATAAATTATTC
15150057 ATATATTATTATATAATAAATTATTC
1 ATATATTATTATA-AATAAATTATTC
*
15150083 ATTTATT-TTAT
1 ATATATTATTAT
15150094 TTATTATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 9 0.28
26 23 0.72
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (25 bp):
ATATATTATTATAAATAAATTATTC
Found at i:15150350 original size:14 final size:14
Alignment explanation
Indices: 15150315--15150344 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
15150305 GTTTATTAGT
15150315 TATATAATTATTTA
1 TATATAATTATTTA
15150329 TATATAATTATTTA
1 TATATAATTATTTA
15150343 TA
1 TA
15150345 ATTAATAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TATATAATTATTTA
Found at i:15150650 original size:10 final size:11
Alignment explanation
Indices: 15150635--15150666 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
15150625 CTAATATATC
15150635 ATAATTTAATT
1 ATAATTTAATT
15150646 A-AATTT-ATT
1 ATAATTTAATT
15150655 ATAATTTAATT
1 ATAATTTAATT
15150666 A
1 A
15150667 CTTATACCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.21
10 10 0.53
11 5 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATAATTTAATT
Found at i:15150787 original size:29 final size:26
Alignment explanation
Indices: 15150726--15150791 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 26
15150716 TAATACATGC
*
15150726 ATATTAATTATTAATATTTAATAATTT
1 ATATTAA-TATTAATATATAATAATTT
*
15150753 GT-TTAATATTAATATATAATTAATATTT
1 ATATTAATATTAATATATAA-T-A-ATTT
15150781 ATATTAATATT
1 ATATTAATATT
15150792 TATCTAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
25 12 0.38
26 5 0.16
27 2 0.06
28 5 0.16
29 8 0.25
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
ATATTAATATTAATATATAATAATTT
Found at i:15150788 original size:12 final size:12
Alignment explanation
Indices: 15150758--15150794 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
15150748 AATTTGTTTA
*
15150758 ATATTAATATAT
1 ATATTAATATTT
15150770 A-ATTAATATTT
1 ATATTAATATTT
15150781 ATATTAATATTT
1 ATATTAATATTT
15150793 AT
1 AT
15150795 CTAATAGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATATTAATATTT
Found at i:15150788 original size:23 final size:23
Alignment explanation
Indices: 15150758--15150884 Score: 72
Period size: 23 Copynumber: 5.5 Consensus size: 23
15150748 AATTTGTTTA
*
15150758 ATATTAATATATAATTAATATTT
1 ATATTAATATATAATTAATAATT
* *
15150781 ATATTAATAT-TTATCTAATAGCTT
1 ATATTAATATATAAT-TAATA-ATT
*
15150805 A-ATT-ATATTATAAATAATTAATT
1 ATATTAATA-TATAATTAA-TAATT
*
15150828 ATAATTAAATATAATAATTAAT-AGT
1 AT-ATT-AATAT-ATAATTAATAATT
*
15150853 ATAATTAATAAAT-ATTAA-AA-T
1 AT-ATTAATATATAATTAATAATT
15150874 -TATTAATATAT
1 ATATTAATATAT
15150885 GAATATTAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 26
0.71 0.08 0.22
Matches are distributed among these distances:
19 9 0.11
20 1 0.01
21 1 0.01
22 12 0.14
23 27 0.32
24 11 0.13
25 11 0.13
26 2 0.02
27 10 0.12
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (23 bp):
ATATTAATATATAATTAATAATT
Found at i:15150825 original size:19 final size:18
Alignment explanation
Indices: 15150803--15150884 Score: 64
Period size: 19 Copynumber: 4.6 Consensus size: 18
15150793 ATCTAATAGC
15150803 TTAATTATATTATAAATAA
1 TTAATTATATTA-AAATAA
15150822 TTAATTATAATTAAATATAA
1 TTAATTAT-ATTAAA-ATAA
**
15150842 -TAATTA-A-TAGTATAA
1 TTAATTATATTAAAATAA
* *
15150857 TTAATAAATATTAAAATTA
1 TTAAT-TATATTAAAATAA
15150876 TTAA-TATAT
1 TTAATTATAT
15150885 GAATATTAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
15 4 0.08
16 6 0.12
17 6 0.12
18 1 0.02
19 25 0.50
20 8 0.16
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (18 bp):
TTAATTATATTAAAATAA
Found at i:15150856 original size:12 final size:11
Alignment explanation
Indices: 15150760--15150908 Score: 85
Period size: 11 Copynumber: 12.8 Consensus size: 11
15150750 TTTGTTTAAT
15150760 ATTAATATATA
1 ATTAATATATA
*
15150771 ATTAATATTTA
1 ATTAATATATA
*
15150782 TATTAATAT-TT
1 -ATTAATATATA
15150793 ATCTAATAGCT-TA
1 AT-TAATA--TATA
15150806 ATTATATTATAAATA
1 ATTA-A-TAT--ATA
15150821 ATTAAT-TATA
1 ATTAATATATA
15150831 ATTAAATATAATA
1 ATT-AATAT-ATA
15150844 ATTAATAGTATA
1 ATTAATA-TATA
*
15150856 ATTAATAAAT-
1 ATTAATATATA
*
15150866 ATTAA-A-ATT
1 ATTAATATATA
15150875 ATTAATATATGAA
1 ATTAATATAT--A
15150888 TATTAATATATA
1 -ATTAATATATA
*
15150900 AATAATATA
1 ATTAATATA
15150909 GGTTGGTACC
Statistics
Matches: 113, Mismatches: 6, Indels: 38
0.72 0.04 0.24
Matches are distributed among these distances:
8 2 0.02
9 6 0.05
10 14 0.12
11 31 0.27
12 28 0.25
13 13 0.12
14 13 0.12
15 6 0.05
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (11 bp):
ATTAATATATA
Found at i:15150893 original size:14 final size:14
Alignment explanation
Indices: 15150831--15150903 Score: 53
Period size: 14 Copynumber: 5.1 Consensus size: 14
15150821 ATTAATTATA
15150831 ATTAA-ATAT-AAT
1 ATTAATATATAAAT
*
15150843 AATTAATAGTATAATT
1 -ATTAATA-TATAAAT
*
15150859 AATAA-ATATTAAAATT
1 ATTAATATA-T-AAA-T
*
15150875 ATTAATATATGAAT
1 ATTAATATATAAAT
15150889 ATTAATATATAAAT
1 ATTAATATATAAAT
15150903 A
1 A
15150904 ATATAGGTTG
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
13 7 0.15
14 18 0.38
15 11 0.23
16 8 0.17
17 3 0.06
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (14 bp):
ATTAATATATAAAT
Found at i:15151247 original size:14 final size:14
Alignment explanation
Indices: 15151204--15151250 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
15151194 ATTATATTAG
15151204 TTATAATAAATAAT
1 TTATAATAAATAAT
*
15151218 TT-TAA-AATGATTAT
1 TTATAATAA--ATAAT
15151232 TTATAATAAATAAT
1 TTATAATAAATAAT
15151246 TTATA
1 TTATA
15151251 TATTTTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
12 2 0.07
13 3 0.11
14 17 0.63
15 3 0.11
16 2 0.07
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (14 bp):
TTATAATAAATAAT
Found at i:15151355 original size:27 final size:26
Alignment explanation
Indices: 15151324--15151374 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
15151314 ATTATTAAAA
*
15151324 TAATATATTTATTTAATAAATATACAT
1 TAATATACTTATTTAATAAA-ATACAT
*
15151351 TAATATACTTATTTGATAAAATAC
1 TAATATACTTATTTAATAAAATAC
15151375 TAAATTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (26 bp):
TAATATACTTATTTAATAAAATACAT
Found at i:15151492 original size:13 final size:13
Alignment explanation
Indices: 15151474--15151498 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15151464 TATTAATTAG
15151474 TAGTTTAATTAAA
1 TAGTTTAATTAAA
15151487 TAGTTTAATTAA
1 TAGTTTAATTAA
15151499 TATTTTATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAGTTTAATTAAA
Found at i:15151500 original size:12 final size:12
Alignment explanation
Indices: 15151466--15151505 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
15151456 AATATTATTA
*
15151466 TTAATTAGTAGT
1 TTAATTAATAGT
15151478 TTAATTAAATAGT
1 TTAATT-AATAGT
*
15151491 TTAATTAATATT
1 TTAATTAATAGT
15151503 TTA
1 TTA
15151506 TGAGTAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:15151595 original size:16 final size:17
Alignment explanation
Indices: 15151536--15151602 Score: 61
Period size: 16 Copynumber: 4.1 Consensus size: 17
15151526 TAAATAACTT
*
15151536 ATTTAATAATAATTTTA
1 ATTTAATAATAATATTA
* *
15151553 ATCTTTAT-TTAA-ATTA
1 AT-TTAATAATAATATTA
15151569 ATTTAAATAATAATATT-
1 ATTT-AATAATAATATTA
15151586 ATTTAATAATAAT-TTA
1 ATTTAATAATAATATTA
15151602 A
1 A
15151603 GTATAATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
15 4 0.10
16 17 0.43
17 12 0.30
18 7 0.17
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTTAATAATAATATTA
Found at i:15151839 original size:23 final size:23
Alignment explanation
Indices: 15151789--15151841 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
15151779 CAATACATAT
* *
15151789 ATTATAAATATAATTTTTAAATAG
1 ATTAT-AATATAATTATTAAATAA
15151813 ATTATAATATAATTATTAAA-ACA
1 ATTATAATATAATTATTAAATA-A
15151836 ATTATA
1 ATTATA
15151842 TCCATAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 1 0.04
23 20 0.77
24 5 0.19
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTATAATATAATTATTAAATAA
Found at i:15151950 original size:18 final size:19
Alignment explanation
Indices: 15151857--15151951 Score: 85
Period size: 18 Copynumber: 5.2 Consensus size: 19
15151847 AAATTCTAAT
**
15151857 TATTATAATATT-AATTTT
1 TATTATAATATTAAATTAA
*
15151875 TATTATAATATT-AATAATA
1 TATTATAATATTAAATTA-A
*
15151894 TATTAT-AGATTAAA-TAA
1 TATTATAATATTAAATTAA
*
15151911 T-TTATAATATTAATTATAA
1 TATTATAATATTAAAT-TAA
15151930 TATTA-AATATTAAATTAA
1 TATTATAATATTAAATTAA
15151948 TATT
1 TATT
15151952 TTCATATAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
16 4 0.06
17 8 0.13
18 27 0.43
19 21 0.33
20 3 0.05
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (19 bp):
TATTATAATATTAAATTAA
Found at i:15153043 original size:16 final size:17
Alignment explanation
Indices: 15153015--15153046 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
15153005 TCTGAATAAT
15153015 ATAATATTTTATTATTA
1 ATAATATTTTATTATTA
15153032 ATAATA-TTTATTATT
1 ATAATATTTTATTATT
15153047 TTATTAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATAATATTTTATTATTA
Found at i:15153065 original size:23 final size:24
Alignment explanation
Indices: 15153009--15153070 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
15152999 GTATAATCTG
* *
15153009 AATAATATAATATTTTATTATTAAT
1 AATAAT-TATTATTTTATTATGAAT
*
15153034 AATATTTATTATTTTATTA-GAAT
1 AATAATTATTATTTTATTATGAAT
*
15153057 AATAATTATAATTT
1 AATAATTATTATTT
15153071 ATTCTAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 15 0.47
24 12 0.38
25 5 0.16
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
AATAATTATTATTTTATTATGAAT
Found at i:15153112 original size:16 final size:16
Alignment explanation
Indices: 15153091--15153134 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
15153081 ATAAATAATA
* *
15153091 TTGTAATAATTAGTAT
1 TTGTAATAATTACTAG
15153107 TTGTAATAATTACTAG
1 TTGTAATAATTACTAG
15153123 TTGTATATAATT
1 TTGTA-ATAATT
15153135 GAAAATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.50
Consensus pattern (16 bp):
TTGTAATAATTACTAG
Found at i:15153574 original size:6 final size:6
Alignment explanation
Indices: 15153558--15153608 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
15153548 TATTCATATA
15153558 TATAA- TATAAT TATAAT TATAAAT TAATAAT TATAAT TATAA- TAT-AT
1 TATAAT TATAAT TATAAT TAT-AAT T-ATAAT TATAAT TATAAT TATAAT
15153605 TATA
1 TATA
15153609 CAATATTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
4 1 0.02
5 11 0.27
6 19 0.46
7 8 0.20
8 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
TATAAT
Found at i:15154621 original size:17 final size:17
Alignment explanation
Indices: 15154586--15154621 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15154576 ATGTATTTAG
*
15154586 TATAAATATTAATATAT
1 TATAAATATTAATAAAT
*
15154603 TATAAATATTATTAAAT
1 TATAAATATTAATAAAT
15154620 TA
1 TA
15154622 ATTAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATAAATATTAATAAAT
Found at i:15155745 original size:72 final size:72
Alignment explanation
Indices: 15155588--15155747 Score: 232
Period size: 72 Copynumber: 2.2 Consensus size: 72
15155578 CTTTTGCTTA
* * *
15155588 AAGGGATCGATTGATTCATGTTTGAAGCCAATTTTCCCTTTGAAAAAGCCTAACCAACTGATCCC
1 AAGGGATCGATTGGTTCAAGTTTGAAGCCAATTTTCCCTTTGAAAAAGCATAACCAACTGATCCC
15155653 TTTATGT
66 TTTATGT
* * * *
15155660 AAGGGATCGATTGGTTCAAGTTTTAAGCCAATTTTCCCTTTGAAAATGCATAATCGA-TCGATCC
1 AAGGGATCGATTGGTTCAAGTTTGAAGCCAATTTTCCCTTTGAAAAAGCATAACCAACT-GATCC
15155724 CTTTATGT
65 CTTTATGT
*
15155732 AGGGGATCGATTGGTT
1 AAGGGATCGATTGGTT
15155748 AATGGGGTGA
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
71 1 0.01
72 78 0.99
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (72 bp):
AAGGGATCGATTGGTTCAAGTTTGAAGCCAATTTTCCCTTTGAAAAAGCATAACCAACTGATCCC
TTTATGT
Found at i:15160510 original size:72 final size:72
Alignment explanation
Indices: 15160385--15160558 Score: 224
Period size: 72 Copynumber: 2.4 Consensus size: 72
15160375 TGCATGACCC
** * ** * *
15160385 GATCAATCCCTTGCT-TAAAGGGATTGATTGGTTCATGTTTTAAGCCAATTTTCCCTTTGAAAAA
1 GATCAATCCCTTTATGT-AAGGGATCGATTGGTTCAAATTTTAAGCCAAATTTCCCTCTGAAAAA
*
15160449 GCCTAATT
65 GCCTAACT
* * *
15160457 GATCGATCCCTTTATGTAGGGGATCGATTGGTTCAAATTTTAAGCCAAATTTCCCTCTGAAAATG
1 GATCAATCCCTTTATGTAAGGGATCGATTGGTTCAAATTTTAAGCCAAATTTCCCTCTGAAAAAG
15160522 CCTAACT
66 CCTAACT
*
15160529 GATCAATCTCTTTATGTAAGGGATCGATTG
1 GATCAATCCCTTTATGTAAGGGATCGATTG
15160559 ATTAATGGGG
Statistics
Matches: 87, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
72 86 0.99
73 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (72 bp):
GATCAATCCCTTTATGTAAGGGATCGATTGGTTCAAATTTTAAGCCAAATTTCCCTCTGAAAAAG
CCTAACT
Found at i:15161488 original size:13 final size:14
Alignment explanation
Indices: 15161454--15161490 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
15161444 AATTAAATAA
15161454 TTATTAATATTATAG
1 TTATTAAT-TTATAG
15161469 TTATTAATTTATAG
1 TTATTAATTTATAG
15161483 -TATTAATT
1 TTATTAATT
15161491 AAAATAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 8 0.36
14 6 0.27
15 8 0.36
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (14 bp):
TTATTAATTTATAG
Found at i:15161544 original size:25 final size:27
Alignment explanation
Indices: 15161471--15161565 Score: 81
Period size: 27 Copynumber: 3.5 Consensus size: 27
15161461 TATTATAGTT
* * *
15161471 ATTAATTTATAGTATTAATTAAAAT-A
1 ATTAATTTATATTATTAAATAATATAA
*
15161497 ATTAATATTGATA-GA-TAAATAAATATAATA
1 ATTAAT-TT-ATATTATTAAAT-AATAT-A-A
15161527 ATT-ATTTATATTATTAAATAATATAA
1 ATTAATTTATATTATTAAATAATATAA
15161553 ATTAATTTATATT
1 ATTAATTTATATT
15161566 TAATATTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
26 14 0.25
27 20 0.36
28 11 0.20
29 7 0.12
30 4 0.07
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (27 bp):
ATTAATTTATATTATTAAATAATATAA
Found at i:15161677 original size:34 final size:32
Alignment explanation
Indices: 15161639--15161701 Score: 90
Period size: 34 Copynumber: 1.9 Consensus size: 32
15161629 TTTATTTTGG
15161639 ATAAATTTATAAATAATTATAACAAAAATTATTA
1 ATAAATTTATAAAT-ATTATAA-AAAAATTATTA
* *
15161673 ATAAATTTATTAATATTATAAAAATATTA
1 ATAAATTTATAAATATTATAAAAAAATTA
15161702 ATTATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 7 0.26
33 7 0.26
34 13 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (32 bp):
ATAAATTTATAAATATTATAAAAAAATTATTA
Found at i:15161784 original size:20 final size:20
Alignment explanation
Indices: 15161761--15161813 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 20
15161751 TATTAATAGT
*
15161761 AATTATTAATATTTATGATA
1 AATTATTAATATTTATAATA
15161781 AATTA--AA-ATTTATAATA
1 AATTATTAATATTTATAATA
* *
15161798 AGTAATTAATATTTAT
1 AATTATTAATATTTAT
15161814 TATTAATGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
17 12 0.44
18 2 0.07
19 2 0.07
20 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (20 bp):
AATTATTAATATTTATAATA
Found at i:15161936 original size:20 final size:19
Alignment explanation
Indices: 15161913--15161967 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
15161903 TAATATTATT
*
15161913 ATAATTATTATAATATTTGG
1 ATAATTATTATAATAATT-G
15161933 ATAATTTATTCAT-ATAATTG
1 ATAA-TTATT-ATAATAATTG
15161953 ATAATTATTA-AATAA
1 ATAATTATTATAATAA
15161968 CTAATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 5 0.16
19 5 0.16
20 9 0.29
21 10 0.32
22 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (19 bp):
ATAATTATTATAATAATTG
Found at i:15162044 original size:31 final size:34
Alignment explanation
Indices: 15162001--15162074 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 34
15161991 CTTGTAATAA
15162001 TTAATATT-TAATTAAAATAA-ATTAA-AAGTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
* * *
15162032 TTAAT-TTATAATTTAATTAATATTAATAATTAC
1 TTAATATTATAATTAAAATAATATTAATAAGTAC
15162065 TTAATATTAT
1 TTAATATTAT
15162075 CAACATAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 2 0.06
31 15 0.42
32 5 0.14
33 10 0.28
34 4 0.11
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (34 bp):
TTAATATTATAATTAAAATAATATTAATAAGTAC
Found at i:15162070 original size:17 final size:18
Alignment explanation
Indices: 15162029--15162073 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
15162019 AAATTAAAAG
15162029 TACTTAAT-TT-ATAATT
1 TACTTAATATTAATAATT
*
15162045 TAATTAATATTAATAA-T
1 TACTTAATATTAATAATT
15162062 TACTTAATATTA
1 TACTTAATATTA
15162074 TCAACATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 14 0.56
18 4 0.16
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.51
Consensus pattern (18 bp):
TACTTAATATTAATAATT
Found at i:15162118 original size:10 final size:10
Alignment explanation
Indices: 15162103--15162160 Score: 68
Period size: 10 Copynumber: 6.0 Consensus size: 10
15162093 TATTAGGATA
15162103 ATTATATAAT
1 ATTATATAAT
15162113 ATTATATAAT
1 ATTATATAAT
*
15162123 ATTAAAT-AT
1 ATTATATAAT
15162132 -TTATTATAAT
1 ATTA-TATAAT
*
15162142 ATAATA-AAT
1 ATTATATAAT
15162151 ATTATATAAT
1 ATTATATAAT
15162161 TATATGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 3 0.08
9 12 0.30
10 23 0.57
11 2 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
ATTATATAAT
Found at i:15162132 original size:17 final size:18
Alignment explanation
Indices: 15162100--15162164 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 18
15162090 TATTATTAGG
15162100 ATAAT-TATATAATATTAT
1 ATAATATATA-AATATTAT
15162118 ATAATAT-TAAATATTTATT
1 ATAATATATAAATA-TTA-T
15162137 ATAATATAATAAATATTAT
1 ATAATAT-ATAAATATTAT
15162156 ATAAT-TATA
1 ATAATATATA
15162165 TGATTAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
17 7 0.17
18 11 0.26
19 15 0.36
20 3 0.07
21 6 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATAATATATAAATATTAT
Found at i:15162341 original size:16 final size:18
Alignment explanation
Indices: 15162322--15162358 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
15162312 ATATTAAATA
15162322 AATTAAATA-T-TTATTT
1 AATTAAATATTATTATTT
*
15162338 AATTAACTATTATTATTT
1 AATTAAATATTATTATTT
15162356 AAT
1 AAT
15162359 AGTTATACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.44
17 1 0.06
18 9 0.50
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
AATTAAATATTATTATTT
Found at i:15162616 original size:23 final size:23
Alignment explanation
Indices: 15162573--15162616 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
15162563 ATTAATTATT
* **
15162573 ATAAATATTTTTATTTGTATTGA
1 ATAAATATATTTATTAATATTGA
15162596 ATAAATATATTTATTAATATT
1 ATAAATATATTTATTAATATT
15162617 TATTAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
ATAAATATATTTATTAATATTGA
Found at i:15162634 original size:15 final size:16
Alignment explanation
Indices: 15162609--15162639 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
15162599 AATATATTTA
15162609 TTAATATTTATTAATT
1 TTAATATTTATTAATT
15162625 TTAA-ATTTATTAATT
1 TTAATATTTATTAATT
15162640 AATTAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTAATATTTATTAATT
Found at i:15162637 original size:9 final size:8
Alignment explanation
Indices: 15162604--15162656 Score: 54
Period size: 8 Copynumber: 6.4 Consensus size: 8
15162594 GAATAAATAT
15162604 ATTTATTAA
1 ATTTATT-A
15162613 TATTTATTA
1 -ATTTATTA
*
15162622 ATTT-TAA
1 ATTTATTA
15162629 ATTTATTA
1 ATTTATTA
*
15162637 ATTAATTA
1 ATTTATTA
15162645 ATTTAATTA
1 ATTT-ATTA
15162654 ATT
1 ATT
15162657 ATATACAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 6 0.16
8 16 0.43
9 8 0.22
10 7 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
ATTTATTA
Found at i:15162879 original size:24 final size:22
Alignment explanation
Indices: 15162842--15162898 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 22
15162832 TATGATATTA
15162842 ATTATAATTATAAACATATAAATT
1 ATTAT-ATTATAAACATAT-AATT
**
15162866 ATTATATTAGTAAATGTATAATT
1 ATTATATTA-TAAACATATAATT
15162889 ATTATTATTA
1 ATTA-TATTA
15162899 ATATTTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (22 bp):
ATTATATTATAAACATATAATT
Found at i:15162976 original size:22 final size:20
Alignment explanation
Indices: 15162951--15163006 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
15162941 AATTATTGGT
15162951 AATAATAATATATCAATATTAC
1 AATAATAATATAT-AATA-TAC
* *
15162973 AATAATTATA-ATAATATAT
1 AATAATAATATATAATATAC
15162992 AATAATAATAT-TAAT
1 AATAATAATATATAAT
15163007 TTAATTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 15 0.50
20 4 0.13
21 2 0.07
22 9 0.30
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
AATAATAATATATAATATAC
Found at i:15163012 original size:33 final size:34
Alignment explanation
Indices: 15162950--15163024 Score: 86
Period size: 33 Copynumber: 2.2 Consensus size: 34
15162940 TAATTATTGG
15162950 TAATAATAATATATCAATATTACAATAATTATAA-
1 TAATAATAATATATCAATATTACAATAATT-TAAT
*
15162984 TAATATATAATA-AT-AATATTA-ATTTAATTTAAT
1 TAATA-ATAATATATCAATATTACA-ATAATTTAAT
15163017 TAATAATA
1 TAATAATA
15163025 TTTAGTCTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
32 7 0.19
33 17 0.46
34 7 0.19
35 6 0.16
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.43
Consensus pattern (34 bp):
TAATAATAATATATCAATATTACAATAATTTAAT
Found at i:15163129 original size:41 final size:41
Alignment explanation
Indices: 15163070--15163163 Score: 118
Period size: 41 Copynumber: 2.3 Consensus size: 41
15163060 TTGAAAAAAT
* * * * **
15163070 AAATAAAAAGCTCTTCTAAATAAAGGCTCAATGACTTTGAA
1 AAATAAAAGGCTCCTCTAAACAAAGGCACAACAACTTTGAA
*
15163111 AAATAAAAGGCTCCTCTAAACAAAGGCACCACAACTTTGAA
1 AAATAAAAGGCTCCTCTAAACAAAGGCACAACAACTTTGAA
15163152 AAAT-AAAGGCTC
1 AAATAAAAGGCTC
15163164 ATCGGCTTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 8 0.17
41 38 0.83
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.21
Consensus pattern (41 bp):
AAATAAAAGGCTCCTCTAAACAAAGGCACAACAACTTTGAA
Found at i:15163527 original size:11 final size:9
Alignment explanation
Indices: 15163503--15163556 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
15163493 ATACCATTTA
15163503 TTATATAAT
1 TTATATAAT
*
15163512 TTATATAAA
1 TTATATAAT
15163521 TTATAT-AT
1 TTATATAAT
15163529 TT-TATAATT
1 TTATATAA-T
15163538 TTCATATAAT
1 TT-ATATAAT
*
15163548 ATAT-TAAT
1 TTATATAAT
15163556 T
1 T
15163557 ATGCGATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
7 3 0.08
8 8 0.22
9 19 0.51
10 2 0.05
11 5 0.14
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (9 bp):
TTATATAAT
Found at i:15163764 original size:13 final size:13
Alignment explanation
Indices: 15163746--15163779 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15163736 AATAAATATT
15163746 AAATAAAGAATTA
1 AAATAAAGAATTA
*
15163759 AAATAAATAATTA
1 AAATAAAGAATTA
*
15163772 AATTAAAG
1 AAATAAAG
15163780 TATTTATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (13 bp):
AAATAAAGAATTA
Found at i:15165060 original size:181 final size:179
Alignment explanation
Indices: 15164749--15169069 Score: 2921
Period size: 181 Copynumber: 24.0 Consensus size: 179
15164739 TATAGTTTTA
* * * * * * * * * **
15164749 TTCATACAAGCTTATTTGGAGTAAAATATTGCTAAATTAATAGTATTCTAAAAATCAATAAACAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAA
* * ** * * * *
15164814 GAGATTTAAAAAATAAATGTATTTGCCGAATCAA-TTCAAAT-GATTAAGATTATTAGAAAAATT
65 GAAATTTAAAAAA-AAATCTATTTATCGAAT-AAGTTCAAATAG-TTATGACTATTTGAACAATT
* * * *
15164877 ATCTATTTCAAATCGTTATGACCTTTTATTTAGTCATAAAATAATAT-TTTCAG
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAAT-TGTTTCAG
* * * * * * ** *
15164930 TTCATACATGCTTGTTCAAAATAAAATAATATTAATTTATAAACATTCAAAAATTAATAAACAAC
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAG
* *
15164995 AAATTTAAAAAAAATAATCTATTTATCGAATAAGTTCAAATAGTTATGGCTATTTAAACAATTAT
66 AAATTT-AAAAAAA-AATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTAT
* * * * *
15165060 CTATTTAAAATAAATATGACATTTTGTTTTATCATAAAACAATTGTTTCAG
129 CTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * * * * * *
15165111 TTCACAAAAGCTTATACAAAATAAAATAATATTACTTTATTAATATTTCAAAAATCAATAAGTTA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAA
* * * * ** * * *
15165176 GAGATTTAAAAAATAAGTCAATTTATTGAATTGGTTCAAATAATTTTG-GTCATTTGAACAATTA
65 GAAATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAATAGTTATGACT-ATTTGAACAATTA
* * * * *
15165240 TCTATTTCAAATAATTATGAACTTTTGTTTTGTTATAAAATATTTGTTTTCA-
128 TCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCAG
* * * *
15165292 -TCATAAAAGCCTATTCGAAATAAAATAATATTAATTTATTAATATTCCAAAATT--TAA-TAAG
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAG
* * * * *
15165353 AGAA-TTAAAAAATAAATTTA-TT-T-G-CT--G---AACTAG-T-T-CCTATTTGAATAATTAT
66 A-AATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTAT
* * * * * * * * * *
15165405 CTATTTTAAATTATTATAAAACTTTTATTCTATTATAAAATAATTGTTTTAG
129 CTATTTCAAATCATTAT-GACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * * *
15165457 TTCATATAAACTTATTCGAAATAAAATAATAGTAATTTAATAATATTCCAAAAATTAATAACTAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAA
* * * * * * ** * * * *
15165522 GAGATTTAAAAAATTAATTTGTTAATTGAAGGAGTTTAAACAGTTAAGACTATATGAACAATTAT
65 GAAATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTAT
*
15165587 CTTTTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGCTTT-AG
129 CTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCAG
* * * * *
15165638 TTCATACAAGCTTATTTGAAATTAAA-AATAATAATTTATTTATATTTTAAAAATTAATAAGT--
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAA
*** * * * * * * ***
15165700 G--ATTTAAAAAGTGGATTTGTTTA-CAGAATCAGTTCAAATAATTATGGCCATGCCAACAATTA
65 GAAATTTAAAAA-AAAATCTATTTATC-GAATAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * *
15165762 TCTATTTCAAATCATTATTACCTTTTGTTTGGAT-ATATAACAATTGTATT-TG
128 TCTATTTCAAATCATTATGACCTTTTGTTTTG-TCATAAAACAATTGT-TTCAG
** * * * *
15165814 AACATTCAAGCTTATTCAAAATAAAATAATACTAATTTATTAATCTTTCAAAAATTAATATGTAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAT-ATTCAAAAATTAATAAGTAA
* * * *
15165879 GAGATTTAAAAAATAAATCTATTTA-CAGAATTAGTTCAAATAGTTATGACTATTTGAATAATTG
65 GAAATTTAAAAAA-AAATCTATTTATC-GAATAAGTTCAAATAGTTATGACTATTTGAACAATTA
** * * * * ** * * **
15165943 TAAACTTCAAATCCTTGTAATTTTTTGTATTGTCATAAAACAATTTTTTTTG
128 TCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * *
15165995 TTCATACAAGC-TATTCAAAATAAAAATAATACTAATCTAATAATATTGCAAAAATTAATAACTA
1 TTCATACAAGCTTATTCGAAAT-AAAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTA
* * * ** * * * * *
15166059 AGATAA-TTAAAAAATAAATTTTTTTGTCGAACCAGTTTAAATATTTAAGGCTATATGAACAATT
64 AGA-AATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATT
* ** * * * * *
15166123 ATCTATGTCAAATTGTTATGACCTTTTATTTTGTCATAAAATAAGTTTTTTTTTTTAA
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAA-----TTGTTTCAG
* * * *
15166181 TTCATACTAGCTTATTAGGAATAAAATAA-AATGAATTTATTAATATTTCAAAAATTAATAAGTA
1 TTCATACAAGCTTATTCGAAATAAAATAATACT-AATTTATTAATA-TTCAAAAATTAATAAGTA
** * * * * * ** * *
15166245 AGTGATTTAAAAAATAATTTTGTTTACCTAACCAGTTTAAATCA-TTATGACTATTTAAACAATT
64 AGAAATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAAT-AGTTATGACTATTTGAACAATT
* * * **
15166309 ATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAAATATTTTTG
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * * * * * * *
15166362 TTCATATAAGTTTGTTTGGAATAAAGTAATACT-ATTCTACTAATATTTCGAATATTAATAAG--
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATT-TATTAATA-TTCAAAAATTAATAAGTA
* * *
15166424 AG--ATTTAAAAAATAAATCTATTTATCAAAGT-AGTTTAAATAGTTATGACTATTTGAGCAATT
64 AGAAATTTAAAAAA-AAATCTATTTATCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAATT
* ** * *
15166486 ATTTATTTCAAATTGTTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCCA-
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTT-CAG
* * * * *
15166539 TTCATACAAG-TATATTTGGATTAAAACAATACTAATTTATTAATATTTCAATAATTAATAAGTA
1 TTCATACAAGCT-TATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTA
* * * * * * * * *
15166603 AAAAATTTAATAAATAAATATGTTTACCGAACTAA-ATCAAATAATTATGATTATTTGAATAATT
64 AGAAATTTAA-AAAAAAATCTATTTATCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAATT
* * * * * *
15166667 ATTTATTTCAAATCATCATGACCTTTTTTTTTTTGTCAGAAAAGAACTGTTTCAG
127 ATCTATTTCAAATCATTATGACC--TTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * * *
15166722 TTCATATAAGCTTATTGGGAATAAAATAATACTAATTTATTAATAATCCAAAAATAAATAA-TAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAAT-ATTCAAAAATTAATAAGT-A
* * * ** * * *
15166786 AGAGATTTAAAAAAGAATCTATTTATTGAGCAAG-TCTAAATAATTATGACTGTTTGAATAATTA
64 AGAAATTTAAAAAAAAATCTATTTATCGAATAAGTTC-AAATAGTTATGACTATTTGAACAATTA
* *** * * * *
15166850 TCTATTTGAAATTGCTATAACCTTTTGTTTTGTTATAAAAGAATTTTTTCTA-
128 TCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTC-AG
* * *
15166902 TTCATAGAAGCTTATTTC-AAATAAAATAACACAAATTTATTAATATT-AAGACAATTAATAAGT
1 TTCATACAAGCTTA-TTCGAAATAAAATAATACTAATTTATTAATATTCAA-A-AATTAATAAGT
* * * **
15166965 AA-AAGATATAAAAAATAAATCCATTTACCGAATAAGTTCAAATCA-TTATGACTATTTGTGCAA
63 AAGAA-ATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAAT-AGTTATGACTATTTGAACAA
* * ** *
15167028 TTATTTATTTCAACTTGTTATGA-CTCTTTGTTTTTTCATAAAACAATTGTTTCTA-
125 TTATCTATTTCAAATCATTATGACCT-TTTGTTTTGTCATAAAACAATTGTTTC-AG
* * *
15167083 TTTATACAAGCTTATTCGAATTAAAATAATACTAATTTATTAATATTTCAATAATTAATAAGTAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAA
* * * * * * * *
15167148 -AAGTTTTGAAGAAATAAATATGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAATAATT
65 GAA-ATTT-AA-AAAAAAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATT
* * * *
15167212 ATCTATTTCAAATCATAATGACCTTTTCTTTTTTAATAAAACAATTGTTTCAG
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * * * * * *
15167265 TTCATATAAGTTTGCTT-GAACTAAAATAACACTAATTTACTAATATTTTAAAAATTAATGAGTA
1 TTCATACAAGCTT-ATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTA
* * * * * * * *
15167329 AAAAAATTAAAAAAAGAATTTATTTACCAAATAAGTTAAAATAGTTATGACTATCTAAACAATTA
64 AGAAATTTAAAAAAA-AATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * * * * *
15167394 TCTGTTTCAAAAT-ATTATGACTTTTTGTCTTATCATAAAATAATTGGTTCTG
128 TCTATTTC-AAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* ** * *
15167446 TTCATGCAAATTTATTTTG-AATAAAATAAT-TTAAATTTATTAATATTTCAAAAATTAATAAGT
1 TTCATACAAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATA-TTCAAAAATTAATAAGT
* ** * * *
15167509 AA-AAATTTTAAAAATAAATCTATTT-TTTAAGCACGTTTAAATAGTTATGACTATTTGAACAAT
63 AAGAAA-TTTAAAAAAAAATCTATTTATCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAAT
* * * * *
15167572 TATCTATTTCAAATCATTATTACCTTTTTGTTTTGTTATAAACCCATTGCTTT-TG
126 TATCTATTTCAAATCATTATGACC-TTTTGTTTTGTCATAAAACAATTG-TTTCAG
* * * * * * * *
15167627 CTCATAAAAACTAATTTGGAATAAAATAATACTAATTTATTAAAATTCCAAAAATTGATAAGTAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATT-CAAAAATTAATAAGTAA
* * * * * *
15167692 AAAATTTTGAAAATAAATCTATTTACCGAGA-GAGTTCAAATAGTTATGACTATTTAAACAATTA
65 GAAA-TTTAAAAAAAAATCTATTTATCGA-ATAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * ** * **
15167756 TTTATTTTAAATTGTTATAATATTTT-TTTTGTCATAAAACAATTGTTTCTA-
128 TCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTC-AG
* * * * **
15167807 TTCATACAAGTTTATT-GAAATAAAATAATACTAGTTTATTAATATTCTAAAAATTAATGATTTG
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAA
* * * * * * *
15167871 GAGATTTAAAAATAAATCTGTTTATCGAATAAGTTTAAATAGTCATGTCTATTTGAACTATTATC
65 GAAATTTAAAAAAAAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATC
* * ** * * * *
15167936 TATTTGAAATCGTTATGAAATTTTATTTTGTCATAAAAAAATTATTTTTA-
130 TATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATT-GTTTCAG
* ** *
15167986 TTCATGCAAAATTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG--A
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAA
* * * * * * * * *
15168049 G--ATTTAAAAACTAAATTTGTTTA-CAAAATCAGTTCAAATAGTTACGATTATTTAAACAACTA
65 GAAATTTAAAAA-AAAATCTATTTATC-GAATAAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * * * *
15168111 TCTATCTCAAATCATTATGATC-TTTGCTTTGTCGTAAAATAATTATTTCTA-
128 TCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTC-AG
* * * * * * ** * * *
15168162 TTCATACAAGATTATTTGGAGTAAAATATTGCTAAACTAATAATATTTTAAAAATTAATATGTAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTAA
* * * * * * *
15168227 GATATTTAAAAAATCAATGT-TTTA-CTGAACCAA-TTCAAATAGTTAAGACTATTAGAACAGTT
65 GAAATTTAAAAAA-AAATCTATTTATC-GAA-TAAGTTCAAATAGTTATGACTATTTGAACAATT
* * * * *
15168289 ATCTATTTCAAATCATTCTGACCTTTTGTTTAGTCATAAAATAATTATTTTAG
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* ** * *
15168342 TTCATACATGCTTATTCGAAATAAAATAATACTCTTTTATTAACATTCAAAAAATTAATAAGCAA
1 TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTC-AAAAATTAATAAGTAA
* * * *
15168407 GAAGTTAAAAAAATAAATCTATTTATCGAACAAGTTCAAATAGTTATGACTATTTGAAGAATTAT
65 GAAATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTAT
* * *
15168472 CTATTTAAAATTGA-TATGA-CTTTTGTTTTATCATAAAACAATTGTTTCAG
129 CTATTTCAAA-TCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * * * * *
15168522 TTCATAAAAGCTTA-TCCAAACTAAAATAATATTACTTTATTAATATTTCAAAAATTGAGAAGTT
1 TTCATACAAGCTTATTCGAAA-TAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGTA
* * * * * * * *
15168586 GGAGATTTAAAAAATAAATCAATTTATTGAATTAGTTCAAATAATTATCG-CCATTTGAATAATT
64 AGAAATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAATAGTTAT-GACTATTTGAACAATT
* * * *
15168650 ATCTATTTCAAATCTTTATGATCTTTTATTTTGTCATAAGACAATTGTTT--G
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * *
15168701 TCATCATACAAGCCTATTCCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATACGT
1 T--TCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATA-TTCAAAAATTAATAAGT
* * * * *
15168766 AA-AAGATTTAAAAAATAAATATACTTACCAAATCAGTTCAAATAGTTATGACTATTTGAACAAT
63 AAGAA-ATTTAAAAAA-AAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAAT
* * * * * * **
15168830 TATATATTTCAAATCGTTCTAACCTTTTATTTTGTCATAAAACAATTATTTGTG
126 TATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
* * * * * *
15168884 TTCATACAAGCTTATT-TAGAATACAATAATGCTAATCTAATAATATT-ATGAAAATTAATAACT
1 TTCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATATTCA--AAAATTAATAAGT
* * * * * * * * * * * *
15168947 AAGAGATTTAAAAAATAATTTTTTTGTTGAACCAA-TTCAAATGGTTAAGGCTATATGAATAATT
63 AAGAAATTTAAAAAAAAATCTATTTATCGAA-TAAGTTCAAATAGTTATGACTATTTGAACAATT
* * * **
15169011 ATATATTTCAAACCATTATGACCTTTTGTTTTGTCATAAAACAAATGTTTTTG
127 ATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
15169064 TTCATA
1 TTCATA
15169070 TACCGAATCA
Statistics
Matches: 3286, Mismatches: 696, Indels: 317
0.76 0.16 0.07
Matches are distributed among these distances:
164 32 0.01
165 25 0.01
166 42 0.01
167 11 0.00
169 4 0.00
170 20 0.01
171 1 0.00
172 2 0.00
173 2 0.00
174 1 0.00
175 6 0.00
176 204 0.06
177 229 0.07
178 79 0.02
179 162 0.05
180 651 0.20
181 1219 0.37
182 347 0.11
183 95 0.03
184 3 0.00
185 3 0.00
186 138 0.04
187 10 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCAAAAATTAATAAGTAAG
AAATTTAAAAAAAAATCTATTTATCGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCT
ATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCAG
Found at i:15165485 original size:166 final size:167
Alignment explanation
Indices: 15165227--15165541 Score: 433
Period size: 166 Copynumber: 1.9 Consensus size: 167
15165217 AATTTTGGTC
* * * * *
15165227 ATTTGAACAATTATCTATTTCAAATAATTATGAACTTTTGTTTTGTTATAAAATATTTGTTTTCA
1 ATTTGAACAATTATCTATTTCAAATAATTATAAACTTTTATTCTATTATAAAATAATTGTTTTCA
* *
15165292 TCATAAAAGCCTATTCGAAATAAAATAATATTAATTTATTAATATTCC-AAAATT-TAA-TAAGA
66 TCATAAAAGCCTATTCGAAATAAAATAATAGTAATTTAATAATATTCCAAAAATTATAACTAAGA
15165354 GAATTAAAAAATAAATTTATTTGCTGAACTAGTTCCT
131 GAATTAAAAAATAAATTTATTTGCTGAACTAGTTCCT
* * *
15165391 ATTTGAATAATTATCTATTTTAAATTATTATAAAACTTTTATTCTATTATAAAATAATTGTTTT-
1 ATTTGAACAATTATCTATTTCAAATAATTAT-AAACTTTTATTCTATTATAAAATAATTGTTTTC
*
15165455 AGTTCATATAAA-CTTATTCGAAATAAAATAATAGTAATTTAATAATATTCCAAAAATTAATAAC
65 A--TCATA-AAAGCCTATTCGAAATAAAATAATAGTAATTTAATAATATTCCAAAAATT-ATAAC
* *
15165519 TAAGAGATTTAAAAAATTAATTT
126 TAAGAGAATTAAAAAATAAATTT
15165542 GTTAATTGAA
Statistics
Matches: 130, Mismatches: 13, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
164 29 0.22
165 27 0.21
166 41 0.32
167 9 0.07
169 3 0.02
170 21 0.16
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.43
Consensus pattern (167 bp):
ATTTGAACAATTATCTATTTCAAATAATTATAAACTTTTATTCTATTATAAAATAATTGTTTTCA
TCATAAAAGCCTATTCGAAATAAAATAATAGTAATTTAATAATATTCCAAAAATTATAACTAAGA
GAATTAAAAAATAAATTTATTTGCTGAACTAGTTCCT
Found at i:15166303 original size:18 final size:18
Alignment explanation
Indices: 15166280--15166330 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
15166270 ACCTAACCAG
15166280 TTTAAATCATTATGACTA
1 TTTAAATCATTATGACTA
15166298 TTTAAA-CAATTAT--CTA
1 TTTAAATC-ATTATGACTA
15166314 TTTCAAATCATTATGAC
1 TTT-AAATCATTATGAC
15166331 CTTTTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
16 6 0.21
17 9 0.32
18 12 0.43
19 1 0.04
ACGTcount: A:0.39, C:0.14, G:0.04, T:0.43
Consensus pattern (18 bp):
TTTAAATCATTATGACTA
Found at i:15166545 original size:544 final size:535
Alignment explanation
Indices: 15164812--15169071 Score: 3060
Period size: 544 Copynumber: 7.9 Consensus size: 535
15164802 ATCAATAAAC
* ** * * * * * *
15164812 AAGAGATTTAAAAAATAAATGTATTTGCCGAA-TCAATTCAAAT-GATTAAGATTATTAGAAAAA
1 AAGAGATTTAAAAAATAAATCTATTTATCAAAGT-AGTTCAAATAG-TTATGACTATTTGAACAA
* * * * * *
15164875 TTATCTATTTCAAATCGTTATGACCTTTTATTTAGTCATAAAATAATAT-TTTC-AGTTCATACA
64 TTATCTATTTCAAATCATTATGACTTTTTGTTTTGTTATAAAACAAT-TGTTTCTA-TTCATACA
* * ** * * * ** * *
15164938 TGCTTGTTCAAAATAAAATAATATTAATTTATAAACA-TTCAAAAATTAATAAACAACAAATTTA
127 AGC-TATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTA
* * * * ** * * *
15165002 AAAAAAATAATCTATTTATCGAATAAGTTCAAATAGTTATGGCTATTTAAACAATTATCTATTTA
191 AAAAATA-AATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * * * * * * ***
15165067 AAATAAATATGACATTTTGTTTTATCATAAAACAATTGTTTCAGTTCACAAAAGCTTATACAAAA
255 AAATCATTATGACCTTTTATTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTAT-TGGAA
* * * * * **
15165132 TAAAATAATATTACTTTATTAATATTTCAAAAATCAATAAGTTAGAGATTTAAAAAATAAGTCAA
319 TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTA
** *** * * * *
15165197 TTTATTGAATTGGTTCAAATAATTTTG-GTCATTTGAACAATTATCTATTTCAAATAATTATGAA
384 TTTACCGAACAAGTTCAAAT-ATTATGACT-ATTTGAACAATTATCTATTTCAAATCATTATGAC
* * ** ** * * * *
15165261 CTTTTGTTTTGTTATAAAATATTTG-TTTTCATCATAAAAGCCTATTCGAAATAAAATAATATTA
447 CTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGCTTATTCAAAATAAAATAATACT-
* *
15165325 ATTTATTAATATTCCAAAATTTAAT
511 ATTTATTAATATTTCAAAAATTAAT
* * * * * *
15165350 AAGAGAATTAAAAAATAAATTTATTT-GC----T-G---AACTAG-T-T-CCTATTTGAATAATT
1 AAGAGATTTAAAAAATAAATCTATTTATCAAAGTAGTTCAAATAGTTATGACTATTTGAACAATT
* * * * * * * *
15165403 ATCTATTTTAAATTATTATAAAAC-TTTTATTCTATTATAAAATAATTGTTT-TAGTTCATATAA
66 ATCTATTTCAAATCATTAT--GACTTTTTGTTTTGTTATAAAACAATTGTTTCTA-TTCATACAA
* * * * * * *
15165466 ACTTATTCGAAATAAAATAATAGTAATTTAATAATATTCCAAAAATTAATAACTAAGAGATTTAA
128 GC-TATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAA
* * * ** ** * * * * *
15165531 AAAATTAATTTGTTAATTGAAGGAGTTTAAACAGTTAAGACTATATGAACAATTATCTTTTTCAA
192 AAAATAAATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* * * *
15165596 ATCATTATGACCTTTTGTTTTGTCATAAAACAATTGCTTTAGTTCATACAAGCTTATTTGAAATT
257 ATCATTATGACCTTTTATTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTA-TTGGAATA
* * * * ** *
15165661 AAA-AATAATAATTTATTTATATTTTAAAAATTAATAAGT----GATTTAAAAAGTGGATTTGTT
321 AAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTATT
* * * *** *
15165721 TACAGAATC-AGTTCAAATAATTATGGCCATGCCAACAATTATCTATTTCAAATCATTATTACCT
386 TACCGAA-CAAGTTCAAAT-ATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCT
* * * * **
15165785 TTTGTTTGGAT-ATATAACAATTGTATTTGAACAT-TCAAGCTTATTCAAAATAAAATAATACTA
449 TTTGTTTTG-TCATAAAACAAATGTTTTTGTTCATAT-AAGCTTATTCAAAATAAAATAATACT-
*
15165848 ATTTATTAATCTTTCAAAAATTAATATGT
511 ATTTATTAATATTTCAAAAATT-A-A--T
* *
15165877 AAGAGATTTAAAAAATAAATCTATTTA-CAGAATTAGTTCAAATAGTTATGACTATTTGAATAAT
1 AAGAGATTTAAAAAATAAATCTATTTATCA-AAGTAGTTCAAATAGTTATGACTATTTGAACAAT
* ** * * * * * * * * * *
15165941 TGTAAACTTCAAATCCTTGTAATTTTTTGTATTGTCATAAAACAATTTTTTTTGTTCATACAAGC
65 TATCTATTTCAAATCATTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCTATTCATACAAGC
** * * * * *
15166006 TATTCAAAATAAAAATAATACTAATCTAATAATATTGCAAAAATTAATAACTAAGATAATTAAAA
130 TATTCGGAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAAAA
* * ** * * * * * *
15166071 AATAAATTTTTTTGTCGAACCAGTTTAAATATTTAAGGCTATATGAACAATTATCTATGTCAAAT
194 AATAAATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
** * * * *
15166136 TGTTATGACCTTTTATTTTGTCATAAAATAAGTTTTTTTTTTTAATTCATACTAGCTTATTAGGA
259 CATTATGACCTTTTATTTTGTCATAAAACAA-----TTGTTTTAGTTCATACAAGCTTATT-GGA
* * *
15166201 ATAAAATAA-AATGAATTTATTAATATTTCAAAAATTAATAAGTAAGTGATTTAAAAAATAATTT
318 ATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
* * * * *
15166265 TGTTTACCTAACCAGTTTAAATCATTATGACTATTTAAACAATTATCTATTTCAAATCATTATGA
382 TATTTACCGAACAAGTTCAAAT-ATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
* * * * *** *
15166330 CCTTTTATTTTGTCATAAAACAAATATTTTTGTTCATATAAGTTTGTTTGGAATAAAGTAATACT
446 CCTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGCTTATTCAAAATAAAATAATACT
* * *
15166395 ATTCTACTAATATTTCGAATATTAAT
511 ATT-TATTAATATTTCAAAAATTAAT
* *
15166421 AAGAGATTTAAAAAATAAATCTATTTATCAAAGTAGTTTAAATAGTTATGACTATTTGAGCAATT
1 AAGAGATTTAAAAAATAAATCTATTTATCAAAGTAGTTCAAATAGTTATGACTATTTGAACAATT
* ** * *
15166486 ATTTATTTCAAATTGTTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCCATTCATACAAGTA
66 ATCTATTTCAAATCATTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCTATTCATACAAG-C
* * * * * * *
15166551 TATTTGGATTAAAACAATACTAATTTATTAATATTTCAATAATTAATAAGTAAAAAATTTAATAA
130 TATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAAAAA
* ** * * * *
15166616 ATAAATATGTTTACCGAACTAAATCAAATAATTATGATTATTTGAATAATTATTTATTTCAAATC
195 ATAAATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC
* * * * * * *
15166681 ATCATGACCTTTTTTTTTTTGTCAGAAAAGAACTGTTTCAGTTCATATAAGCTTATTGGGAATAA
260 ATTATGACC--TTTTATTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATT-GGAATAA
* * * * *
15166746 AATAATACTAATTTATTAATAATCCAAAAATAAATAA-TAAAGAGATTTAAAAAA-GAATCTATT
322 AATAATACTAATTTATTAATATTTCAAAAATTAATAAGT-AAGAGATTTAAAAAATAAATTTATT
** * * * * *** *
15166809 TATTGAGCAAG-TCTAAATAATTATGACTGTTTGAATAATTATCTATTTGAAATTGCTATAACCT
386 TACCGAACAAGTTC-AAAT-ATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCT
* * * * * * *
15166873 TTTGTTTTGTTATAAAA-GAATTTTTTCTATTCATAGAAGCTTATTTC-AAATAAAATAACACAA
449 TTTGTTTTGTCATAAAACAAATGTTTT-TGTTCATATAAGCTTA-TTCAAAATAAAATAATAC-T
15166936 ATTTATTAATA-TT-AAGACAATTAAT
511 ATTTATTAATATTTCAA-A-AATTAAT
* * * * *
15166961 AAGTAAAAGATATAAAAAATAAATCCATTTACCGAA-TAAGTTCAAATCA-TTATGACTATTTGT
1 AAG----AGATTTAAAAAATAAATCTATTTATCAAAGT-AGTTCAAAT-AGTTATGACTATTTGA
* * * ** * *
15167024 GCAATTATTTATTTCAACTTGTTATGACTCTTTGTTTT-TTCATAAAACAATTGTTTCTATTTAT
60 ACAATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTT-ATAAAACAATTGTTTCTATTCAT
* *
15167088 ACAAGCTTATTC-GAATTAAAATAATACTAATTTATTAATATTTCAATAATTAATAAGTAAAAGT
124 ACAAGC-TATTCGGAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGA-T
* * * *
15167152 -TTTGAAGAAATAAATATGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCT
186 ATTT-AAAAAATAAATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCT
* * * * * * * *
15167216 ATTTCAAATCATAATGACCTTTTCTTTTTTAATAAAACAATTGTTTCAGTTCATATAAGTTTGCT
250 ATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTT-AT
* * * * * * *
15167281 T-GAACTAAAATAACACTAATTTACTAATATTTTAAAAATTAATGAGTAAAAAAATTAAAAAA-A
314 TGGAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATA
* * * * * *
15167344 GAATTTATTTACCAAATAAGTTAAAATAGTTATGACTATCTAAACAATTATCTGTTTCAAAAT-A
378 -AATTTATTTACCGAACAAGTTCAAATA-TTATGACTATTTGAACAATTATCTATTTC-AAATCA
* * * * * * * ** ** ***
15167408 TTATGACTTTTTGTCTTATCATAAAATAATTGGTTCTGTTCATGCAAATTTATTTTGAATAAAAT
440 TTATGACCTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGCTTATTCAAAATAAAAT
*
15167473 AATTTA-AATTTATTAATATTTCAAAAATTAAT
505 AA--TACTATTTATTAATATTTCAAAAATTAAT
* * ** * *
15167505 AAGTAAAAATTTTAAAAATAAATCTATTT-TTTAAGCACGTTTAAATAGTTATGACTATTTGAAC
1 AAG---AGATTTAAAAAATAAATCTATTTATCAAAGTA-GTTCAAATAGTTATGACTATTTGAAC
* * * **
15167569 AATTATCTATTTCAAATCATTATTACCTTTTTGTTTTGTTATAAACCCATTGCTTT-TGCTCATA
62 AATTATCTATTTCAAATCATTATGA-CTTTTTGTTTTGTTATAAAACAATTG-TTTCTATTCATA
* * * * * * * *
15167633 AAAACTAATTTGGAATAAAATAATACTAATTTATTAAAATTCCAAAAATTGATAAGTAAAAAATT
125 CAAGCT-ATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATT
** * * * * *
15167698 TTGAAAATAAATCTATTTACCGAGA-GAGTTCAAATAGTTATGACTATTTAAACAATTATTTATT
189 TAAAAAATAAATATGTTTACCGA-ACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATT
* ** * ** * *
15167762 TTAAATTGTTATAATATTTT-TTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGTTTATTGA
253 TCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTGTTT-TAGTTCATACAAGCTTATTGG
* * * **
15167825 AATAAAATAATACTAGTTTATTAATA-TTCTAAAAATTAATGATTTGGAGATTT-AAAAATAAAT
317 AATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * * * * * * *
15167888 CTGTTTATCGAATAAGTTTAAATAGTCATGTCTATTTGAACTATTATCTATTTGAAATCGTTATG
381 TTATTTACCGAACAAGTTCAAATA-TTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
** * * * ** **
15167953 AAATTTTATTTTGTCATAAAA-AAATTATTTTTATTCATGCAAAATTATTCAAAATAAAATAATA
445 ACCTTTTGTTTTGTCATAAAACAAA-TGTTTTTGTTCATATAAGCTTATTCAAAATAAAATAATA
15168017 CTAATTTATTAATATTTCAAAAATTAAT
509 CT-ATTTATTAATATTTCAAAAATTAAT
* * * * * * * *
15168045 AAGAGATTTAAAAACTAAATTTGTTTA-CAAAATCAGTTCAAATAGTTACGATTATTTAAACAAC
1 AAGAGATTTAAAAAATAAATCTATTTATCAAAGT-AGTTCAAATAGTTATGACTATTTGAACAAT
* * * ** * *
15168109 TATCTATCTCAAATCATTATGA-TCTTTGCTTTGTCGTAAAATAATTATTTCTATTCATACAAGA
65 TATCTATTTCAAATCATTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCTATTCATACAAG-
* * * * * ** * * *
15168173 TTATTTGGAGTAAAATATTGCTAAACTAATAATATTTTAAAAATTAATATGTAAGATATTTAAAA
129 CTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAAAA
* * * * * * *
15168238 AATCAATGT-TTTACTGAACCAATTCAAATAGTTAAGACTATTAGAACAGTTATCTATTTCAAAT
194 AATAAATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAAT
* * * * * * *
15168302 CATTCTGACCTTTTGTTTAGTCATAAAATAATTATTTTAGTTCATACATGCTTATTCGAAATAAA
259 CATTATGACCTTTTATTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATT-GGAATAAA
** * * * *
15168367 ATAATACTCTTTTATTAACA-TTCAAAAAATTAATAAGCAAGA-AGTTAAAAAAATAAATCTATT
323 ATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATTTATT
* * * *
15168430 TATCGAACAAGTTCAAATAGTTATGACTATTTGAAGAATTATCTATTTAAAATTGA-TATGA-CT
386 TACCGAACAAGTTCAAATA-TTATGACTATTTGAACAATTATCTATTTCAAA-TCATTATGACCT
* * ** * * * *
15168493 TTTGTTTTATCATAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAACTAAAATAATATTACT
449 TTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATAAGCTTATTCAAAATAAAATAATACTA-T
15168558 TTATTAATATTTCAAAAATTGAGAAGT
513 TTATTAATATTTCAAAAATT---AA-T
** * ** * * * *
15168585 TGGAGATTTAAAAAATAAATCAATTTATTGAATTAGTTCAAATAATTATCG-CCATTTGAATAAT
1 AAGAGATTTAAAAAATAAATCTATTTATCAAAGTAGTTCAAATAGTTAT-GACTATTTGAACAAT
* * * * *
15168649 TATCTATTTCAAATCTTTATGA-TCTTTTATTTTGTCATAAGACAATTGTTTGTCA-TCATACAA
65 TATCTATTTCAAATCATTATGACT-TTTTGTTTTGTTATAAAACAATTGTTTCT-ATTCATACAA
** * * *
15168712 GCCTATTCCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATACGTAAAAGATTTAA
128 G-CTATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAA
** * * *
15168777 AAAATAAATATACTTACCAAATCAGTTCAAATAGTTATGACTATTTGAACAATTATATATTTCAA
192 AAAATAAATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* * * * *
15168842 ATCGTTCTAACCTTTTATTTTGTCATAAAACAATTATTTGT-GTTCATACAAGCTTATTTAGAAT
257 ATCATTATGACCTTTTATTTTGTCATAAAACAATTGTTT-TAGTTCATACAAGCTTA-TTGGAAT
* * * * * * *
15168906 ACAATAATGCTAATCTAATAATATTAT-GAAAATTAATAACTAAGAGATTTAAAAAAT-AATTTT
320 AAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTA
*** * * * * * * *
15168969 TTTGTTGAACCAA-TTCAAATGGTTAAGGCTATATGAATAATTATATATTTCAAACCATTATGAC
384 TTTACCGAA-CAAGTTCAAAT-ATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
15169033 CTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATA
447 CTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATATA
15169072 CCGAATCAGT
Statistics
Matches: 2945, Mismatches: 644, Indels: 262
0.76 0.17 0.07
Matches are distributed among these distances:
522 80 0.03
523 51 0.02
524 1 0.00
525 1 0.00
526 59 0.02
527 185 0.06
528 31 0.01
529 3 0.00
530 1 0.00
532 1 0.00
533 2 0.00
534 58 0.02
535 115 0.04
536 116 0.04
537 143 0.05
538 188 0.06
539 45 0.02
540 302 0.10
541 257 0.09
542 218 0.07
543 251 0.09
544 581 0.20
545 99 0.03
546 22 0.01
547 6 0.00
548 128 0.04
549 1 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (535 bp):
AAGAGATTTAAAAAATAAATCTATTTATCAAAGTAGTTCAAATAGTTATGACTATTTGAACAATT
ATCTATTTCAAATCATTATGACTTTTTGTTTTGTTATAAAACAATTGTTTCTATTCATACAAGCT
ATTCGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATATTTAAAAAA
TAAATATGTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
TTATGACCTTTTATTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTGGAATAAAATA
ATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTATTTACCG
AACAAGTTCAAATATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
TGTCATAAAACAAATGTTTTTGTTCATATAAGCTTATTCAAAATAAAATAATACTATTTATTAAT
ATTTCAAAAATTAAT
Found at i:15166948 original size:363 final size:361
Alignment explanation
Indices: 15164747--15169054 Score: 3030
Period size: 363 Copynumber: 12.0 Consensus size: 361
15164737 TATATAGTTT
** * * * * * * * *
15164747 TATTCATACAAGCTTATTTGGAGTAAAATATTGCTAAATTAATAGTA-TTCTAAAAATCAATAAA
1 TATTCATACAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAG
* * * * * * * * *
15164811 CAAGAGATTTAAAAAATAAATGTATTTGCCG-AATCAATTCAAAT-GATTAAGATTATTAGAAAA
65 TAAAAGATTTAAAAAATAAATCTATTTACCGAAAT-AGTTCAAATAG-TTATGACTATTTGAACA
* * * * *
15164874 ATTATCTATTTCAAATCGTTATGACCTTTTATTTAGTCATAAAATAATAT-TTTCAGTTCATACA
128 ATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAAT-TGTTTCAGTTCATACA
* * *** * * * ** * *
15164938 TGCTTGTTCAAAATAAAATAATATTAATTTATAAACA-TTCAAAAATTAATAAACAACAAATTTA
192 AGCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT-
* * * * * *
15165002 AAAAAAATAATCTATTTATCGAATAAGTTCAAATAGTTATGGCTATTTAAACAATTATCTATTTA
256 -AAAAAATAATCTATTTATTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
*** * * *
15165067 AAATAAATATGACATTTTGTTTTATCATAAAACAATTGTTTC
320 AAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTTTTTC
* * * * * *
15165109 -AGTTCACAAAAGCTTA-TACAAAATAAAATAATATTACTTTATTAATATTTCAAAAATCAATAA
1 TA-TTCATACAAGCTTATTTC-AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA
* * * * ** * * * * *
15165172 GTTAGAGATTTAAAAAATAAGTCAATTTATTGAATTGGTTCAAATAATTTTG-GTCATTTGAACA
64 GTAAAAGATTTAAAAAATAAATCTATTTACCGAAATAGTTCAAATAGTTATGACT-ATTTGAACA
* * * * *
15165236 ATTATCTATTTCAAATAATTATGAAC-TTTTGTTTTGTTATAAAATATTTGTTTTCA--TCATAA
128 ATTATCTATTTCAAATCATTATG-ACTTTTTGTTTTGTCATAAAACAATTG-TTTCAGTTCATAC
* * * * * *
15165298 AAGCCTATTCGAAATAAAATAATATTAATTTATTAATA-TTCCAAAATT--TAA-TAAGAGAATT
191 AAGCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * *
15165359 AAAAAATAA---ATTTATTTG--C----TGAACTAG-T-T-CCTATTTGAATAATTATCTATTTT
256 AAAAAATAATCTATTTA-TTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * * * * * * *
15165412 AAATTATTATAAAACTTTTATTCTATTATAAAATAATTGTTT-
320 AAATTGTTAT-GACCTTTTGTTTTGTCATAAAACAATTTTTTC
* * * * *
15165454 TAGTTCATATAAACTTA-TTCGAAATAAAATAATAGTAATTTAATAATATTCCAAAAATTAATAA
1 TA-TTCATACAAGCTTATTTC-AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA
* * * * * * ** ** * * * *
15165518 CTAAGAGATTTAAAAAATTAATTTGTTAATTGAAGGAGTTTAAACAGTTAAGACTATATGAACAA
64 GTAAAAGATTTAAAAAATAAATCTATTTACCGAAATAGTTCAAATAGTTATGACTATTTGAACAA
* *
15165583 TTATCTTTTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGCTTT-AGTTCATACAA
129 TTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTG-TTTCAGTTCATACAA
* * * * *
15165647 GCTTATTTGAAATTAAA-AATAATAATTTATTTATATTTTAAAAATTAATAAGT----GATTTAA
193 GCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAA
* * * * ** * * * * ***
15165707 AAAGTGGATTTGTTTACAGAATC-AGTTCAAATAATTATGGCCATGCCAACAATTATCTATTTCA
258 AAAAT-AATCTATTTATTGAA-CAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCA
** * * *
15165771 AATCATTATTACCTTTTGTTTGGAT-ATATAACAATTGTATTT-
321 AATTGTTATGACCTTTTGTTTTG-TCATAAAACAATT-T-TTTC
* * * * *
15165813 GA-ACATTCAAGCTTA-TTCAAAATAAAATAATACTAATTTATTAATCTTTCAAAAATTAATATG
1 TATTCATACAAGCTTATTTC-AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * *
15165876 TAAGAGATTTAAAAAATAAATCTATTTACAGAATTAGTTCAAATAGTTATGACTATTTGAATAAT
65 TAAAAGATTTAAAAAATAAATCTATTTACCGAAATAGTTCAAATAGTTATGACTATTTGAACAAT
* ** * * * * * * * **
15165941 TGTAAACTTCAAATCCTTGTAATTTTTTGTATTGTCATAAAACAATTTTTTTTGTTCATACAAGC
130 TATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGC
*** * * * * * *
15166006 -TATTCAAAATAAAAATAATACTAATCTAATAATATTGCAAAAATTAATAACTAAGATAATTAAA
195 TTATTTGGAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAA
* * * * * * * * * *
15166070 AAATAAATTTTTTTGTCGAACCAGTTTAAATATTTAAGGCTATATGAACAATTATCTATGTCAAA
259 AAAT-AATCTATTTATTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
* * *
15166135 TTGTTATGACCTTTTATTTTGTCATAAAATAAGTTTTTTTTTT
323 TTGTTATGACCTTTTGTTTTGTCATAAAACAA----TTTTTTC
* *** *
15166178 TAATTCATACTAGCTTATTAGGAATAAAATAA-AATGAATTTATTAATATTTCAAAAATTAATAA
1 T-ATTCATACAAGCTTATTTCAAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAA
** * * * * ** * *
15166242 GTAAGTGATTTAAAAAATAATTTTGTTTACCTAACCAGTTTAAATCA-TTATGACTATTTAAACA
64 GTAAAAGATTTAAAAAATAAATCTATTTACCGAAATAGTTCAAAT-AGTTATGACTATTTGAACA
* * * * ** *
15166306 ATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAAATATTTTTGTTCATATAA
128 ATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAA
* * * * * *
15166371 GTTTGTTTGGAATAAAGTAATACT-ATTCTACTAATATTTC--GAA-TATTAA-TAAGAGATTTA
193 GCTTATTTGGAATAAAATAATACTAATT-TATTAATATTTCAAAAATTAATAAGTAAGAGATTTA
** ** * *
15166431 AAAAATAAATCTATTTATCAAAGTAGTTTAAATAGTTATGACTATTTGAGCAATTATTTATTTCA
257 AAAAAT-AATCTATTTATTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * *
15166496 AATTGTTATGACTTTTTGTTTTGTTATAAAACAATTGTTTC
321 AATTGTTATGACCTTTTGTTTTGTCATAAAACAATTTTTTC
* ** * * *
15166537 CATTCATACAAG-TATATTTGGATTAAAACAATACTAATTTATTAATATTTCAATAATTAATAAG
1 TATTCATACAAGCT-TATTTCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * ** * * *
15166601 TAAAAAATTTAATAAATAAATATGTTTACCGAACTAAATCAAATAATTATGATTATTTGAATAAT
65 TAAAAGATTTAAAAAATAAATCTATTTACCGAAATAGTTCAAATAGTTATGACTATTTGAACAAT
* * * * * * *
15166666 TATTTATTTCAAATCATCATGACCTTTTTTTTTTTGTCAGAAAAGAACTGTTTCAGTTCATATAA
130 TATCTATTTCAAATCATTATGA-C-TTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAA
* * * *
15166731 GCTTATTGGGAATAAAATAATACTAATTTATTAATAATCCAAAAATAAATAA-TAAAGAGATTTA
193 GCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT-AAGAGATTTA
* * * * * * *
15166795 AAAAAGAATCTATTTATTGAGCAAGTCTAAATAATTATGACTGTTTGAATAATTATCTATTTGAA
257 AAAAATAATCTATTTATTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* * * *
15166860 ATTGCTATAACCTTTTGTTTTGTTATAAAAGAATTTTTTC
322 ATTGTTATGACCTTTTGTTTTGTCATAAAACAATTTTTTC
* * *
15166900 TATTCATAGAAGCTTATTTCAAATAAAATAACACAAATTTATTAATA-TT-AAGACAATTAATAA
1 TATTCATACAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTTCAA-A-AATTAATAA
* * **
15166963 GTAAAAGATATAAAAAATAAATCCATTTACCG-AATAAGTTCAAATCA-TTATGACTATTTGTGC
64 GTAAAAGATTTAAAAAATAAATCTATTTACCGAAAT-AGTTCAAAT-AGTTATGACTATTTGAAC
* * ** * * *
15167026 AATTATTTATTTCAACTTGTTATGACTCTTTGTTTTTTCATAAAACAATTGTTTCTA-TTTATAC
127 AATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATAC
* * * *
15167090 AAGCTTA-TTCGAATTAAAATAATACTAATTTATTAATATTTCAATAATTAATAAGTAAAAGTTT
191 AAGCTTATTTGGAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATT
* * * ** * * *
15167154 TGAAGAAATAAATATGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATT
255 T-AAAAAAT-AATCTATTTATTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATT
** * * * * *
15167219 TCAAATCATAATGACCTTTTCTTTTTTAATAAAACAATTGTTTC
318 TCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTTTTTC
* * ** * * * * * *
15167263 -AGTTCATATAAGTTTGCTTGAACTAAAATAACACTAATTTACTAATATTTTAAAAATTAATGAG
1 TA-TTCATACAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * *
15167327 TAAAAAAATTAAAAAA-AGAATTTATTTACC-AAATAAGTTAAAATAGTTATGACTATCTAAACA
65 TAAAAGATTTAAAAAATA-AATCTATTTACCGAAAT-AGTTCAAATAGTTATGACTATTTGAACA
* * * * * * *
15167390 ATTATCTGTTTCAAAAT-ATTATGACTTTTTGTCTTATCATAAAATAATTGGTTCTGTTCATGCA
128 ATTATCTATTTC-AAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACA
** * * *
15167454 AATTTATTTTGAATAAAATAAT-TTAAATTTATTAATATTTCAAAAATTAATAAGTAA-AAATTT
192 AGCTTATTTGGAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * *
15167517 TAAAAATAAATCTATTT-TTTAAGCACGTTTAAATAGTTATGACTATTTGAACAATTATCTATTT
256 AAAAAAT-AATCTATTTATTGAA-CAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTT
** * * * * *
15167581 CAAATCATTATTACCTTTTTGTTTTGTTATAAACCCATTGCTTT-
319 CAAATTGTTATGACC-TTTTGTTTTGTCATAAAACAATT-TTTTC
** * * * ** * * *
15167625 TGCTCATAAAAACTAATTTGGAATAAAATAATACTAATTTATTAAAATTCCAAAAATTGATAAGT
1 TATTCATACAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT
* ** * * *
15167690 AAAAAATTTTGAAAATAAATCTATTTACCGAGAGAGTTCAAATAGTTATGACTATTTAAACAATT
66 AAAAGATTTAAAAAATAAATCTATTTACCGAAATAGTTCAAATAGTTATGACTATTTGAACAATT
* * ** *
15167755 ATTTATTTTAAATTGTTAT-AATATTTT-TTTTGTCATAAAACAATTGTTTCTA-TTCATACAAG
131 ATCTATTTCAAATCATTATGACT-TTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATACAAG
* * * * * **
15167817 TTTA-TTGAAATAAAATAATACTAGTTTATTAATA-TTCTAAAAATTAATGATTTGGAGATTT-A
194 CTTATTTGGAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTTAA
* * * * * * *
15167879 AAAATAAATCTGTTTATCGAATAAGTTTAAATAGTCATGTCTATTTGAACTATTATCTATTTGAA
258 AAAAT-AATCTATTTATTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* ** * *
15167944 ATCGTTATGAAATTTTATTTTGTCATAAAAAAATTATTTT-
322 ATTGTTATGACCTTTTGTTTTGTCATAAAACAATT-TTTTC
* **
15167984 TATTCATGCAAAATTA-TTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
1 TATTCATACAAGCTTATTTC-AAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * * *
15168048 ----AGATTTAAAAACTAAATTTGTTTA-CAAAATCAGTTCAAATAGTTACGATTATTTAAACAA
65 TAAAAGATTTAAAAAATAAATCTATTTACCGAAAT-AGTTCAAATAGTTATGACTATTTGAACAA
* * * * * * *
15168108 CTATCTATCTCAAATCATTATGA-TCTTTGCTTTGTCGTAAAATAATTATTTCTA-TTCATACAA
129 TTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTC-AGTTCATACAA
* * * * ** * * * *
15168171 GATTATTTGGAGTAAAATATTGCTAAACTAATAATATTTTAAAAATTAATATGTAAGATATTTAA
193 GCTTATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAA
* * * * * *
15168236 AAAATCAATGT-TTTACTGAACCAA-TTCAAATAGTTAAGACTATTAGAACAGTTATCTATTTCA
258 AAAAT-AATCTATTTATTGAA-CAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCA
** * * * *
15168299 AATCATTCTGACCTTTTGTTTAGTCATAAAATAATTATTT-
321 AATTGTTATGACCTTTTGTTTTGTCATAAAACAATTTTTTC
* ** *
15168339 TAGTTCATACATGCTTA-TTCGAAATAAAATAATACTCTTTTATTAACA-TTCAAAAAATTAATA
1 TA-TTCATACAAGCTTATTTC-AAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATA
* * *
15168402 AGCAAGAAG-TTAAAAAAATAAATCTATTTATCGAACA-AGTTCAAATAGTTATGACTATTTGAA
63 AGTAA-AAGATTTAAAAAATAAATCTATTTACCGAA-ATAGTTCAAATAGTTATGACTATTTGAA
* * * *
15168465 GAATTATCTATTTAAAATTGA-TATGAC-TTTTGTTTTATCATAAAACAATTGTTTCAGTTCATA
126 CAATTATCTATTTCAAA-TCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATA
* *** * * * * **
15168528 AAAGCTTA-TCCAAACTAAAATAATATTACTTTATTAATATTTCAAAAATTGAGAAGTTGGAGAT
190 CAAGCTTATTTGGAA-TAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGAT
* ** * * * *
15168592 TTAAAAAATAAATCAATTTATTGAATTAGTTCAAATAATTATCG-CCATTTGAATAATTATCTAT
254 TTAAAAAAT-AATCTATTTATTGAACAAGTTTAAATAGTTAT-GACTATTTGAACAATTATCTAT
* * *
15168656 TTCAAATCT-TTATGATCTTTTATTTTGTCATAAGACAATTGTTTGTC
317 TTCAAAT-TGTTATGACCTTTTGTTTTGTCATAAAACAATT-TTT-TC
* * *
15168703 -A-TCATACAAGCCTATTCCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATACGT
1 TATTCATACAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT
* *
15168766 AAAAGATTTAAAAAATAAATATACTTACC-AAATCAGTTCAAATAGTTATGACTATTTGAACAAT
66 AAAAGATTTAAAAAATAAATCTATTTACCGAAAT-AGTTCAAATAGTTATGACTATTTGAACAAT
* * * * * * * **
15168830 TATATATTTCAAATCGTTCTAACCTTTTATTTTGTCATAAAACAATTATTTGTGTTCATACAAGC
130 TATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGC
* * * * * * *
15168895 TTATTTAGAATACAATAATGCTAATCTAATAATATTAT-GAAAATTAATAACTAAGAGATTTAAA
195 TTATTTGGAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTAAGAGATTTAAA
* * * * * * * * * *
15168959 AAATAATTTTTTTGTTGAACCAA-TTCAAATGGTTAAGGCTATATGAATAATTATATATTTCAAA
259 AAATAATCTATTTATTGAA-CAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
***
15169023 CCATTATGACCTTTTGTTTTGTCATAAAACAA
323 TTGTTATGACCTTTTGTTTTGTCATAAAACAA
15169055 ATGTTTTTGT
Statistics
Matches: 3092, Mismatches: 714, Indels: 281
0.76 0.17 0.07
Matches are distributed among these distances:
345 31 0.01
346 193 0.06
347 32 0.01
348 6 0.00
349 4 0.00
350 5 0.00
352 1 0.00
353 5 0.00
354 8 0.00
355 108 0.03
356 178 0.06
357 187 0.06
358 185 0.06
359 93 0.03
360 311 0.10
361 500 0.16
362 443 0.14
363 577 0.19
364 36 0.01
365 5 0.00
366 7 0.00
367 169 0.05
368 8 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (361 bp):
TATTCATACAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT
AAAAGATTTAAAAAATAAATCTATTTACCGAAATAGTTCAAATAGTTATGACTATTTGAACAATT
ATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCT
TATTTGGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
ATAATCTATTTATTGAACAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTG
TTATGACCTTTTGTTTTGTCATAAAACAATTTTTTC
Found at i:15170065 original size:362 final size:357
Alignment explanation
Indices: 15169106--15170781 Score: 1078
Period size: 362 Copynumber: 4.6 Consensus size: 357
15169096 CTACTTGAAT
* * * * * * * * * * *
15169106 AATTATATATCTCAAATCATTCTAACATTTTGTTTTGTAATAAAACAATTATTTATGTT-CATAC
1 AATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTTATAAAATAATTTTTTCTATTATATAC
* * * * * * * *
15169170 AAGCTTA-TTCGGAATACAATAATGCTAATCTAATAATATT-ATGAAAATTAATAACTAAGTGAT
66 AAGCTTATTTC-AAATAAAATAATACTAATTTATTAATATTCA-G-AAA--AATTAGTAAGAGAT
* * * * * ** * * * * *
15169233 CTAAAAAATAAATTTTTTTGCCAAACTAATTTTAATAGTTAAGGCTATATAAATAATTATCTATT
126 TTAAAAAATAAATCTATTTACCAAA-TAAGTAAAATAGTTATGACTATTTGAATAATTATTTATT
* * * * * * * * * * * * *
15169298 TTAAACCGTTATGACCTATTGTTTTATCGTAAAACAAATGTTTTTGTTCATATAAGTTTGTTCAG
190 TCAAATCATTATGA-TTTTTATTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTTAG
** *
15169363 AATAAAATAATAT-TAATTTATTAATATTTTGAAAA-T--TAA-TAAGAGATTTAAAAAGTATAT
254 AATAAAATAA-ATCTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA-TAAAT
* ** * * ** *
15169423 CTATTTACCA-AACCTGTTTAAATAGTTATAACAATTTGAAC
317 CTATTTA-CAGATCAAGTTCAAATAGTTACAACTTTTTAAAC
* * * ** *
15169464 AATTATTTATTTCAAATCATTATAACCATTTAT-TTTTGTCATAAAATAATAGTTTCTATT-GAT
1 AATTATCTATTTCAAATCGTTATAACC-TTT-TGTTTTGTTATAAAATAATTTTTTCTATTATAT
* * * * * * * *
15169527 AC-AGTCCTATTTGAAATAAAAGTAGTGCTAATTTGTTAATATCCTA-AAAATTAATATGTAACA
64 ACAAG-CTTATTTCAAATAAAA-TAATACTAATTTATTAATATTC-AGAAAA--ATTA-GTAAGA
* * * * ** * * * * * * * * *
15169590 AATTTAAAAAATAAGTTTGTTGGCCTAACT-ATTACAAATATTTATAATTGTTTAAACAATTATC
123 GATTTAAAAAATAAATCTATTTACC-AAATAAGTA-AAATAGTTATGACTATTTGAATAATTATT
* * * * * * * * *
15169654 TGTTTCAAAGCATTATAACCTTTTGTTTTGTTACAAAACAATTGTTTTTGTTCATACAAGCTAAC
186 TATTTCAAATCATTATGA-TTTTTATTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTAT
* * *
15169719 TCAGAATAACATAAATCTAA-TTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAACTG
250 TTAGAATAAAATAAATCTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA-TA
*
15169783 AATCTATTT-CTTGATCAAGTTCAAATAGTTACAACTTTTTAAAC
314 AATCTATTTAC-AGATCAAGTTCAAATAGTTACAACTTTTTAAAC
* *
15169827 AATTATCTATTTCAAATTGCTATAACCTTTTGTTTTGTTATAAAATAATTTTTTCTATTCATATA
1 AATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTTATAAAATAATTTTTTCTATT-ATATA
* * *
15169892 CAAGCTTATTTCAATTAAAATAATACAAATTTATTAATATTCAGACAACAATTAGTAAAAGATTT
65 CAAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCAGA-AA-AATTAGTAAGAGATTT
15169957 AAAAAATAAATCTATTTACCAAATAAGTTAAAATAGTTATGACTATTTGAATAATTATTTATTTC
128 AAAAAATAAATCTATTTACCAAATAAG-TAAAATAGTTATGACTATTTGAATAATTATTTATTTC
* * * *
15170022 AAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAACTTATTTGGAT
192 AAATCATTATGA-TTTTTATTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTTAGAA
* **** * *
15170087 TAAAATAATAT-TAATTTATTAACATTTTTTCAATTAATAAGTAAAAGATTTTAAAAATAAATAT
256 TAAAATAA-ATCTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGA-TTTAAAAATAAATCT
* * * ** * * * ** * *
15170151 GTTTACCGAACAAGTTCTCATAATCATAACTACTTGAAT
319 ATTTACAGATCAAGTTCAAATAGTTACAACTTTTTAAAC
* * * * *
15170190 AATTATTTATTTCAAATCGTTATGAA-CTTTTGTTTTGTTATAAAACAATTATATCAATT-TATA
1 AATTATCTATTTCAAATCGTTAT-AACCTTTTGTTTTGTTATAAAATAATTTTTTCTATTATATA
* * * * * *
15170253 TAGGCTTA-TTCGAAATAAAATAATTCTAGTTTATTAATATTCCAAAAATTAATGAGTAAGAGAT
65 CAAGCTTATTTC-AAATAAAATAATACTAATTTATTAATATT-CAGAAA--AATTAGTAAGAGAT
* * * * * * * *
15170317 TTAAAATATGAATCTATTTACTAAACAAGATCAAATAGTTATGATTGTTTAAATAATTATTTATT
126 TTAAAAAATAAATCTATTTACCAAATAAG-TAAAATAGTTATGACTATTTGAATAATTATTTATT
* * *
15170382 TCAAAT-AGTTATGATCTTTTATTTTGTCATAAAATAATTG-TTTCGATTCATACAAGTTTATTT
190 TCAAATCA-TTATGAT-TTTTATTTTGTCATAAAACAATTGTTTTTG-TTCATACAAGCTTATTT
* * *
15170445 AGAATAAAAT-AATACAAATTTATTAATA-TTCTAAAAATTAATAGGTAGGAGATTTAAAAAATA
252 AGAATAAAATAAAT-CTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATTT-AAAAATA
* * * **
15170508 AATCTATTTGCCAAAT-AAGTTCAAATAG-T-C-ATTTATATTTGAC
314 AATCTATTT-ACAGATCAAGTTCAAATAGTTACAACTT-T-TTAAAC
* * * *
15170551 AAATTATCTAGTTCAAATCATTATGACCTTTTGTTTTGTTGTAAAATAATTTTTTCTATTGATAT
1 -AATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTTATAAAATAATTTTTTCTATT-ATAT
** * * * ** *
15170616 GGAA--TTATTT-AGAATAAAATAATACTGATTCATTAAGATTTTG-AAAATTAATAAGA-ATAT
64 ACAAGCTTATTTCA-AATAAAATAATACTAATTTATTAATATTCAGAAAAATTAGTAAGAGAT-T
* * * * * * *
15170676 TAAAAACTAAATCTATTAACCAAATTAGTATAAATAGTTATGACTTTTTGAACAATTATATATCT
127 TAAAAAATAAATCTATTTACCAAATAAGTA-AAATAGTTATGACTATTTGAATAATTATTTATTT
* * *
15170741 CAAATCAATATGATCTTTATTTTGTCATAGAACAATTGTTT
191 CAAATCATTATGATTTTTATTTTGTCATAAAACAATTGTTT
15170782 CCTTTTATAT
Statistics
Matches: 1025, Mismatches: 237, Indels: 112
0.75 0.17 0.08
Matches are distributed among these distances:
357 25 0.02
358 97 0.09
359 66 0.06
360 136 0.13
361 61 0.06
362 398 0.39
363 205 0.20
364 34 0.03
365 3 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (357 bp):
AATTATCTATTTCAAATCGTTATAACCTTTTGTTTTGTTATAAAATAATTTTTTCTATTATATAC
AAGCTTATTTCAAATAAAATAATACTAATTTATTAATATTCAGAAAAATTAGTAAGAGATTTAAA
AAATAAATCTATTTACCAAATAAGTAAAATAGTTATGACTATTTGAATAATTATTTATTTCAAAT
CATTATGATTTTTATTTTGTCATAAAACAATTGTTTTTGTTCATACAAGCTTATTTAGAATAAAA
TAAATCTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAATAAATCTATTTACA
GATCAAGTTCAAATAGTTACAACTTTTTAAAC
Found at i:15170393 original size:17 final size:18
Alignment explanation
Indices: 15170347--15170393 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
15170337 CTAAACAAGA
*
15170347 TCAAATAGTTATGATTGTT
1 TCAAATAGTTAT-ATTATT
*
15170366 T-AAATAATTAT-TTATT
1 TCAAATAGTTATATTATT
15170382 TCAAATAGTTAT
1 TCAAATAGTTAT
15170394 GATCTTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 5 0.21
17 9 0.38
18 9 0.38
19 1 0.04
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (18 bp):
TCAAATAGTTATATTATT
Found at i:15170626 original size:181 final size:181
Alignment explanation
Indices: 15169070--15170758 Score: 944
Period size: 181 Copynumber: 9.4 Consensus size: 181
15169060 TTTGTTCATA
* * * * * * * * * *
15169070 TACCGAATCAGTTCAAGTAGTTATGACTACTTGAATAATTATATATCTCAAATCATTCTAACATT
1 TACCAAATAAGTTCAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCATTATGACCTT
* * * * * ** * *
15169135 TTGTTTTGTAATAAAACAATTATTTATGTTCATA--CAAGCTTATTCGGAATACAATAATGCTAA
65 TTGTTTTGTTATAAAATAATTTTTTCTATTCATATGCAA-CTTATTTAGAATAAAATAATACTAA
* * * * * * * * *
15169198 TCTAATAATATTATGAAAATTAATAACTAAGTGATCTAAAAAATAAATTTTTT
129 TTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
* ** * * * * * * * * *
15169251 TGCCAAACTAA-TTTTAATAGTTAAGGCTATATAAATAATTATCTATTTTAAACCGTTATGACCT
1 TACCAAA-TAAGTTCAAATAG-TCATGATATTTGAATAATTATTTATTTCAAATCATTATGACCT
* * ** * * * * *
15169315 ATTGTTTTATCGTAAAACAAATGTTTT-TGTTCATAT--AAGTT-TGTTCAGAATAAAATAATAT
64 TTTGTTTTGTTATAAAA-TAATTTTTTCTATTCATATGCAACTTAT-TT-AGAATAAAATAATAC
* * * *
15169376 TAATTTATTAATATTTTGAAAA-T--TAA-TAAGAGATTTAAAAAGTATATCTATT
126 TAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
*** * * * * * *
15169428 TACCAAACCTGTTTAAATAGTTATAACAATTTGAACAATTATTTATTTCAAATCATTATAACCAT
1 TACCAAATAAGTTCAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCATTATGACC-T
* ** * * * * *
15169493 TTAT-TTTTGTCATAAAATAATAGTTTCTATTGATA--CAGTCCTATTT-GAAATAAAAGTAGTG
64 TT-TGTTTTGTTATAAAATAATTTTTTCTATTCATATGCA-ACTTATTTAG-AATAAAA-TAATA
* * * * * * * *
15169554 CTAATTTGTTAATATCCTAAAAATTAATATGTAACAAATTTAAAAAATAAGTTTGTT
125 CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
** * * * * * * * * * * *
15169611 GGCCTAACT-A-TTACAAATATTTATAATTGTTTAAACAATTATCTGTTTCAAAGCATTATAACC
1 TACC-AAATAAGTT-CAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCATTATGACC
* * * * * * *
15169674 TTTTGTTTTGTTACAAAACAATTGTTTT-TGTTCATA--CAAGCTAACTCAGAATAACATAA-AT
63 TTTTGTTTTGTTATAAAATAATT-TTTTCTATTCATATGCAA-CTTATTTAGAATAAAATAATA-
* *
15169735 CTAA-TTATTAATATT-TCAAAAATTAATAAGTAAGAGATTTAAAAACTGAATCTATT
125 CTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
*** * ** * * * * *** *
15169791 T-CTTGATCAAGTTCAAATAGTTACAACTTTTTAAACAATTATCTATTTCAAATTGCTATAACCT
1 TACCAAAT-AAGTTCAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCATTATGACCT
* * *
15169855 TTTGTTTTGTTATAAAATAATTTTTTCTATTCATATACAAGCTTATTTCA-ATTAAAATAATACA
64 TTTGTTTTGTTATAAAATAATTTTTTCTATTCATATGCAA-CTTATTT-AGAATAAAATAATACT
* * * *
15169919 AATTTATTAATATTC-AGACAA-CAATTAGTAAAAGATTTAAAAAATAAATCTATT
127 AATTTATTAATATTCTA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
* * *
15169973 TACCAAATAAGTTAAAATAGTTATGACTATTTGAATAATTATTTATTTCAAATCATTATGACTTT
1 TACCAAATAAGTTCAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCATTATGACCTT
* * * * * *
15170038 TTGTTTTGTCATAAAACAATTGTTTT-TGTTCATA--CAAACTTATTTGGATTAAAATAATATTA
65 TTGTTTTGTTATAAAATAATT-TTTTCTATTCATATGC-AACTTATTTAGAATAAAATAATACTA
* * *** * * * *
15170100 ATTTATTAACATTTTTTCAATTAATAAGTAAAAGATTTTAAAAATAAATATGTT
128 ATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
* * ** * * * * *
15170154 TACCGAACAAGTTCTCATAATCATAACTACTTGAATAATTATTTATTTCAAATCGTTATGAACTT
1 TACCAAATAAGTTCAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCATTATGACCTT
* * * * * * * *
15170219 TTGTTTTGTTATAAAACAATTATATCAATTTATAT--AGGCTTA-TTCGAAATAAAATAATTCTA
65 TTGTTTTGTTATAAAATAATTTTTTCTATTCATATGCA-ACTTATTTAG-AATAAAATAATACTA
* * * * *
15170281 GTTTATTAATATTCCAAAAATTAATGAGTAAGAGATTTAAAATATGAATCTATT
128 ATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
* * * * * * *
15170335 TACTAAACAAGATCAAATAGTTATGATTGTTTAAATAATTATTTATTTCAAAT-AGTTATGATCT
1 TACCAAATAAGTTCAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCA-TTATGACCT
* * * * * *
15170399 TTTATTTTGTCATAAAATAATTGTTTCGATTCATA--CAAGTTTATTTAGAATAAAATAATACAA
64 TTTGTTTTGTTATAAAATAATTTTTTCTATTCATATGCAA-CTTATTTAGAATAAAATAATACTA
* *
15170462 ATTTATTAATATTCTAAAAATTAATAGGTAGGAGATTTAAAAAATAAATCTATT
128 ATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
* * * *
15170516 TGCCAAATAAGTTCAAATAGTCATTTATATTTGACA-AATTATCTAGTTCAAATCATTATGACCT
1 TACCAAATAAGTTCAAATAGTCA-TGATATTTGA-ATAATTATTTATTTCAAATCATTATGACCT
* * * *
15170580 TTTGTTTTGTTGTAAAATAATTTTTTCTATTGATATGGAA-TTATTTAGAATAAAATAATACTGA
64 TTTGTTTTGTTATAAAATAATTTTTTCTATTCATATGCAACTTATTTAGAATAAAATAATACTAA
* * * * * *
15170644 TTCATTAAGATTTTGAAAATTAATAAG--A-ATA-TTAAAAACTAAATCTATT
129 TTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
* * * * * * * * *
15170693 AACCAAATTAGTAT-AAATAGTTATGACTTTTTGAACAATTATATATCTCAAATCAATATGATCT
1 TACCAAATAAGT-TCAAATAGTCATGA-TATTTGAATAATTATTTATTTCAAATCATTATGACCT
15170757 TT
64 TT
15170759 ATTTTGTCAT
Statistics
Matches: 1154, Mismatches: 293, Indels: 126
0.73 0.19 0.08
Matches are distributed among these distances:
176 5 0.00
177 133 0.12
178 34 0.03
179 32 0.03
180 158 0.14
181 523 0.45
182 176 0.15
183 91 0.08
184 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (181 bp):
TACCAAATAAGTTCAAATAGTCATGATATTTGAATAATTATTTATTTCAAATCATTATGACCTTT
TGTTTTGTTATAAAATAATTTTTTCTATTCATATGCAACTTATTTAGAATAAAATAATACTAATT
TATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATT
Found at i:15171228 original size:182 final size:182
Alignment explanation
Indices: 15170906--15171234 Score: 389
Period size: 182 Copynumber: 1.8 Consensus size: 182
15170896 AATCGTTTTG
* *
15170906 ACCTTTTGTTTAGTCATGAAACAATTATTTCAATTCATACAAGCTTATTTAGAATCAAATAATAC
1 ACCTTTTGTTTAGTCATGAAACAATTATTTCAATTCATACAAGCTTATTCAGAATAAAATAATAC
* * * * *
15170971 TAATTTATTAAAATTCAAAAAATTAATAAGCAAGTGATTTAAAAAAATGAATATGTTTATCGAAT
66 TAATTTATTAAAATTCAAAAAATTAATAAGCAAGTGATTTAAAAAAATAAATATATTTACCAAAC
15171036 AAGCTCAAATAGATATGGCCATCTCAACATTTATTTATTTTATATCATTATT
131 AAGCTCAAATAGATATGGCCATCTCAACATTTATTTATTTTATATCATTATT
* ** * * *
15171088 ACCTTTTGTTTAGTCAT-ATAACAATTGTTT-TTTATCATACAAGGTTGTTCAGAATAAAATGAT
1 ACCTTTTGTTTAGTCATGA-AACAATTATTTCAAT-TCATACAAGCTTATTCAGAATAAAATAAT
** * * *
15171151 ACTAATTTATTAATCTTTC-AAAAATTAATAAGTAAGAT-ATTT-AAAAAATAAAATCTATTTCC
64 ACTAATTTATTAA-AATTCAAAAAATTAATAAGCAAG-TGATTTAAAAAAAT-AAATATATTTAC
* * *
15171213 CAAACCAGTTCAAATAGTTATG
126 CAAACAAGCTCAAATAGATATG
15171235 ACTATTTGAA
Statistics
Matches: 121, Mismatches: 21, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
181 9 0.07
182 108 0.89
183 4 0.03
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.39
Consensus pattern (182 bp):
ACCTTTTGTTTAGTCATGAAACAATTATTTCAATTCATACAAGCTTATTCAGAATAAAATAATAC
TAATTTATTAAAATTCAAAAAATTAATAAGCAAGTGATTTAAAAAAATAAATATATTTACCAAAC
AAGCTCAAATAGATATGGCCATCTCAACATTTATTTATTTTATATCATTATT
Found at i:15173136 original size:181 final size:181
Alignment explanation
Indices: 15171281--15173589 Score: 1350
Period size: 181 Copynumber: 12.8 Consensus size: 181
15171271 TAAAAAATAA
* * * * * * * *
15171281 ATCTTTTGTTCTGTCATAAAACAATTATTTATGTTCATACAAG-CTTATTTGAAATAAAATAATA
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAATAAAATAATA
* * * * * ** *** * * * * * *
15171345 GTAATCTACTAATAATATGCAAATTAATAACCGAGAGATTTAAAAATTAAATTTGTTTGCCGAAC
66 CTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTGAA-
* * * ** * *
15171410 CAGTTCAAATAGTTAAGACT-TATGAACAATTATCCATTTCAAATCAATGTG
130 CAGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCATTATG
* * * * ** *
15171461 ACCTTTTCTTTTGTCATAAAAC-ATT-TTTTTAATTTATACTAG-CTTATTCAGAATAAAATAA-
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCT-ATTCATAAAAGTCTTATTCGGAATAAAATAAT
* * * * * *
15171522 AATGAATTTATTAATATT-TCAAAAATTGATAAGTAAGAGGTTTAAAAAAGAATTCTATTTACCT
65 ACT-AATTTATTAATATTCT-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTA-CT
* * * * **
15171586 -AACCGTTCTAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATG
127 GAACAGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCATTATG
* * * * * * *
15171640 A-CTTTTTGTTTTGTCA-AAAA-AAATGTTTTTGTTCATATAAGT-TTGTTTGGAATAAAACAAT
1 ATCTTTTT-TTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAATAAAATAAT
* * * *
15171701 ACTAATCTATTAATATTCCAAAAATTAATAAG----AGATTTAAAAAATAAATCTTTTTA-TCAA
65 ACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACT-GA
* *
15171761 ACTAGTTCAAATAGTTATGACTATTT-AAGCAATTATTTATTTCAAATCATTATT
129 AC-AGTTCAAATAGTTATGACTATTTGAA-CAAATATTTATTTCAAATCATTATG
* * * * * * * * * *
15171815 A-CTTTTGTTCTATTATTAAACACTAGTTTCTATTCATATAAG-ATTATTCGGATTAAAATAATA
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAATAAAATAATA
* * * * * ** * * **
15171878 CTAATTTATTAATATTTTGACAATTAACAAGTTAAAAAATAAAAAAAATAAATATGTTTACCAAA
66 CTAATTTATTAATATTCTAAAAATTAATAAG-TAAAAGATTTAAAAAATAAATCTATTTACTGAA
* * * * * *
15171943 CTAGATCAAATAGTGATGACTATTTGAATAATTATCTATTTCAAATTATTATG
130 C-AGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCATTATG
* * * * * *
15171996 ACCTTTTGTTTTGTCATAAAAAAATTATTT-TAGTTCATATAAG-CTTATTCGAAATAAAATAAT
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTA-TTCATAAAAGTCTTATTCGGAATAAAATAAT
** * * ** * * * * * *
15172059 TTTAAGTTATTAATATTCTGAAAACAAATAATTAAGAGATTTAAAAAATGAATCTGTTTATTAAA
65 ACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTGAA
* * * ** ** * *
15172124 TAAGTTTAAATAATTATGGTTATTTGAAC-AATGATCAATTTGAAATCACTAT-
130 -CAGTTCAAATAGTTATGACTATTTGAACAAAT-ATTTATTTCAAATCATTATG
* * * * * * ***
15172176 AACTTTTTGTTTTGTCATAAAAGATTTCTTT-TGTTTATTTTAGT-TTATTTC-GAATAAAATAA
1 ATCTTTTT-TTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTA-TTCGGAATAAAATAA
* * *
15172238 TA-TAAATTTATTAATA-T-TAAGACAATTAATAGGTAAAAGATTTAAAAAATAAGTGTATTTAC
64 TACT-AATTTATTAATATTCTAA-A-AATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTAC
* * * * **
15172300 TGAACAAGTTCAAATCGCTATGATTATGTGAAC----A---A---CAAATTGTTATG
126 TGAAC-AGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCATTATG
* *
15172347 A-CTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA-ACAA-TCTTATTC-AAATTAAAATAA
1 ATCTTTTT-TTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAA-TAAAATAA
** * * * * *
15172408 TTTTAATTTATTAATATT-TCAACAATTAATAAGTAAAAGATTTAACAAATAAATATGTTTATTG
64 TACTAATTTATTAATATTCT-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTG
* * * * *
15172472 AACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATTTCAAATTATTATG
128 AAC-AGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCATTATG
* * * * * * *
15172527 ATCTTTTGTTTTGTAATAAAAGAACTATTTC-AGTTAATATAAGT-TTATT-GGAAATAAAATAA
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTA-TTCATAAAAGTCTTATTCGG-AATAAAATAA
* * *
15172589 TACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGAATTAAAAAATGAATCTATTTACTGA
64 TACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTG-
* *
15172654 AAAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAACA-CATTATG
128 AACAGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAA-ATCATTATG
* * * * * *
15172708 ACTTTTTTTTTTTGTCATAAAGCAGTTGGATT-TATTCATGAAAG-CTTATTTC-AAATAAAATA
1 A-TCTTTTTTTTTGTCATAAAACAATT-GTTTCTATTCATAAAAGTCTTA-TTCGGAATAAAATA
* * * * *
15172770 ATA-TAAATTTATTAATATTTTAAAAATTAATACA-TAATA-ATTTAAATAATAAATTTATTTTT
63 ATACT-AATTTATTAATATTCTAAAAATTAATA-AGTAAAAGATTTAAAAAATAAATCTA-TTTA
* * **
15172832 CTGAACACGTTTAAATAGTTACGACTATTT-AA-ATAAT-TTCTAATTT-AAATTGTTATG
125 CTGAACA-GTTCAAATAGTTATGACTATTTGAACA-AATATT-T-ATTTCAAATCATTATG
* * * * * * *
15172889 ATCATTTGTTTTGTGATAAATCAATTGTTTCTATTCATATAAG-CTTATTTGGAATAAAACAATA
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAATAAAATAATA
* * * * *
15172953 CTAATTTATTAAAATTCAAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTATTTACCGAGT
66 CTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTGA-A
* *
15173018 CAGTTCAAATAGTTATGGCTATTTGAACAAATATTTATTTGAAATCATTATG
130 CAGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCATTATG
**
15173070 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTC-TATTCGGGGTAAAATAATA
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAATAAAATAATA
* * * * **
15173134 CTAATTTATTAATATTCTAAAAATTAATAAATTAGAGATTTAAAAAATAAATCTACTTACCAAAC
66 CTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTGAAC
* * * * * * * *
15173199 AAGTTCAAATAATCAT-ATCCATTTAAACCATTATCTATTTCGAATCATTATG
131 -AGTTCAAATAGTTATGA-CTATTTGAACAAATATTTATTTCAAATCATTATG
* * * *
15173251 A-CATTTTGTTTTGTCATAAAATAATACCAATTATTCAAAATAATTAGGATTCATACAAA--ATT
1 ATC-TTTTTTTTTGTCAT---A-AA-A-CAATTGTT-----T--CT---ATTCATA-AAAGTCTT
* ** * * * *
15173313 ATACAAAATAAAGTAATACCAATTTATTACTATTTTAAAAATTAATAAG-----GATTTAAAAAA
48 ATTCGGAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAA
* * * * ** * * *
15173373 TAAATGTGTTTGCTGAACTAATTCAAATAGTTAAAACTATTAGAACAATTATCTATTTCAAATCA
113 TAAATCTATTTACTGAAC-AGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCA
*
15173438 TTCT-
177 TTATG
* * * * * * * * *
15173442 AAC--TTTTTTAGTCATAAAATAATTGTTTCAACTCATACATGTC-TATTTGAAATAAAATAATA
1 ATCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAATAAAATAATA
* * *
15173504 CTAATTTATTAACATTCAAAAAATTAATAAGTAAGAA-ATTAAAAAAATAAATC-AGTTTACTGA
66 CTAATTTATTAATATTCTAAAAATTAATAAGTAA-AAGATTTAAAAAATAAATCTA-TTTACTGA
* *
15173567 ACAAGTTTAAATATTTATGACTA
129 AC-AGTTCAAATAGTTATGACTA
15173590 ATGATGCATA
Statistics
Matches: 1654, Mismatches: 356, Indels: 240
0.74 0.16 0.11
Matches are distributed among these distances:
169 6 0.00
170 118 0.07
171 8 0.00
172 4 0.00
173 48 0.03
174 31 0.02
175 51 0.03
176 58 0.04
177 1 0.00
178 122 0.07
179 119 0.07
180 254 0.15
181 500 0.30
182 181 0.11
183 12 0.01
184 2 0.00
185 4 0.00
186 2 0.00
187 7 0.00
189 10 0.01
191 1 0.00
192 63 0.04
193 1 0.00
194 1 0.00
197 47 0.03
198 3 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (181 bp):
ATCTTTTTTTTTGTCATAAAACAATTGTTTCTATTCATAAAAGTCTTATTCGGAATAAAATAATA
CTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTACTGAAC
AGTTCAAATAGTTATGACTATTTGAACAAATATTTATTTCAAATCATTATG
Found at i:15175580 original size:181 final size:181
Alignment explanation
Indices: 15175271--15175621 Score: 429
Period size: 181 Copynumber: 1.9 Consensus size: 181
15175261 ATTATTACCT
* * * * **
15175271 TTTGTTTTGTCATAAAACAAATTTTTTTGTTCATACAAGTTTTTTCAAAATAAAATAATTTTAAT
1 TTTGTTTTATCATAAAACAAATTTTTCTATTCATACAAGTTTATTCAAAATAAAATAATGCTAAT
* * * *
15175336 TTATTAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTGCCAAACCAGTT
66 TTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTGGCCAAACCAGTG
** * *
15175401 CAATTAGTTATAACTATTTTAACAATTATTTATTTCAAATCGTTTTGACTA
131 CAAACAGTTATAACTATTTGAACAATTATCTATTTCAAATCGTTTTGACTA
* * * *
15175452 TTTGTTTTATCATAAAA-TAATTGTTTCTATTCATAC-AGTCTTATTCATAATACAGTAATGCTA
1 TTTGTTTTATCATAAAACAAATT-TTTCTATTCATACAAGT-TTATTCAAAATAAAATAATGCTA
** **
15175515 ATTTATTAATATTCTAAAAATTAATAAGTAACG-GATTTAAAAAATTTATTTGTTGGCTTAACCA
64 ATTTATTAATATTCTAAAAATTAATAAGTAA-GAGATTTAAAAAATAAATTTGTTGGCCAAACCA
* * *
15175579 GTGCAAACAGTTATGATTATTTGAATAATTATCTATTTCAAAT
128 GTGCAAACAGTTATAACTATTTGAACAATTATCTATTTCAAAT
15175622 TGTTAGCTTA
Statistics
Matches: 142, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
180 7 0.05
181 134 0.94
182 1 0.01
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (181 bp):
TTTGTTTTATCATAAAACAAATTTTTCTATTCATACAAGTTTATTCAAAATAAAATAATGCTAAT
TTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTGGCCAAACCAGTG
CAAACAGTTATAACTATTTGAACAATTATCTATTTCAAATCGTTTTGACTA
Found at i:15179493 original size:225 final size:226
Alignment explanation
Indices: 15179155--15179603 Score: 819
Period size: 225 Copynumber: 2.0 Consensus size: 226
15179145 TAGCACTAGG
*
15179155 AGTGGTGCTCTGCAAGAAACCAATAAAGATTGGGTAAGATTTAATTATTCTTGCTTTTTATTTTA
1 AGTGGTGCTATGCAAGAAACCAATAAAGATTGGGTAAGATTTAATTATTCTTGCTTTTTATTTTA
*
15179220 TTTCTTATTTGTTAGCTTGGAGAGTGAGAATGAAGAAGCTTTGTGTTTGCTCTTGATATTTAAGT
66 TTTCTTATTTGTTAGCTTGGAGAGTGAGAATGAAGAAGCTTTGTGTTTGCTCTTCATATTTAAGT
15179285 GAATTCATTAATTTTTTTTTATTATACTCGTATGTTTAACTTATGGTAGATTCA-TTTTTTTTTT
131 GAATTCATTAATTTTTTTTTATTATACTCGTATGTTTAACTTATGGTAGATTCATTTTTTTTTTT
15179349 CAAGTAGCACTTATAATATATATATAAACTA
196 CAAGTAGCACTTATAATATATATATAAACTA
*
15179380 AGTGGTGCTATGTAAGAAACCAATAAAGATTGGGTAAGATTTAATTATTCTTGCTTTTTATTTTA
1 AGTGGTGCTATGCAAGAAACCAATAAAGATTGGGTAAGATTTAATTATTCTTGCTTTTTATTTTA
*
15179445 TTTCTTATTTGTTAGCTTGGAGAGTGAGAATGGAGAAGCTTTGTGTTTGCTCTTCATATTTAAGT
66 TTTCTTATTTGTTAGCTTGGAGAGTGAGAATGAAGAAGCTTTGTGTTTGCTCTTCATATTTAAGT
15179510 GAATTCATTAATTTTTTTTTATTATACTCGTATGTTTAACTTATGGTAGATTCATTTTTTTTTTT
131 GAATTCATTAATTTTTTTTTATTATACTCGTATGTTTAACTTATGGTAGATTCA---TTTTTTTT
*
15179575 TTTTAAGTAGCACTTATAATATATATATA
193 TTTCAAGTAGCACTTATAATATATATATA
15179604 TATATATAAA
Statistics
Matches: 215, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
225 180 0.84
229 35 0.16
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (226 bp):
AGTGGTGCTATGCAAGAAACCAATAAAGATTGGGTAAGATTTAATTATTCTTGCTTTTTATTTTA
TTTCTTATTTGTTAGCTTGGAGAGTGAGAATGAAGAAGCTTTGTGTTTGCTCTTCATATTTAAGT
GAATTCATTAATTTTTTTTTATTATACTCGTATGTTTAACTTATGGTAGATTCATTTTTTTTTTT
CAAGTAGCACTTATAATATATATATAAACTA
Found at i:15184110 original size:144 final size:145
Alignment explanation
Indices: 15183745--15184265 Score: 618
Period size: 145 Copynumber: 3.6 Consensus size: 145
15183735 ATACCTTTTA
* * * * * * *
15183745 AAGGGTATTTTCAAAATTTGGCCTTCCTGAGCTTAGATTTTCATAAAATTTTTTAGATCTTAATT
1 AAGGGTATTTTCATAATTTGGCCTTCC-CAACTTGGATTTTCATGAAACTTTTCAGATCTTAATT
* * * * * *
15183810 TCATAATATTTAATGATTTTTGATGGATTTGAAATCATAGCAGTACCCCA-ATAAGTGTGAAAGT
65 TCATAATATTTCATAATTTTTGGTGCATTTGAAATCATAGCAGTACCCCAGAGAAGTGTGAAATT
*
15183874 ACCAAAATATCCCTAT
130 ACCAAAATACCCCTAT
* ** *
15183890 AAGGGTATATTCATAATTTGGCCTTTTCAAGCTTGAATTTTCATGAAACTTTTCAGATCTTAATT
1 AAGGGTATTTTCATAATTTGGCCTTCCCAA-CTTGGATTTTCATGAAACTTTTCAGATCTTAATT
*
15183955 TCATAATATTTCATAATTTTTGGTGCATTTGAAATCATAGCAATATCCCCAGA-AAGTGTGAAAT
65 TCATAATATTTCATAATTTTTGGTGCATTTGAAATCATAGCAGTA-CCCCAGAGAAGTGTGAAAT
15184019 TACCAAAATACCCCTAT
129 TACCAAAATACCCCTAT
* *
15184036 AAGGGTA-TTTCGTAATTTGGCCTTCCCAACTTGGATTTTTATGAAACTTTTCAGATCTTAATTT
1 AAGGGTATTTTCATAATTTGGCCTTCCCAACTTGGATTTTCATGAAACTTTTCAGATCTTAATTT
* * *
15184100 CATAATATTTCATGATTGTTGGTGCATTTGAAATCATTGCAGTACCCC-GAGAAGTGTGAAATTA
66 CATAATATTTCATAATTTTTGGTGCATTTGAAATCATAGCAGTACCCCAGAGAAGTGTGAAATT-
** **
15184164 ATTAAAATACCTTTAT
130 ACCAAAATACCCCTAT
* *** * * * * * *
15184180 AAGGGTATTTTCTTAATTTGATTTTTTCGAGCTCGGATTTTCATGAAACTTTTCATATCTAAATT
1 AAGGGTATTTTCATAATTTG-GCCTTCCCAACTTGGATTTTCATGAAACTTTTCAGATCTTAATT
*
15184245 TTATAATATTTCATAATTTTT
65 TCATAATATTTCATAATTTTT
15184266 TGTGTTTTAA
Statistics
Matches: 323, Mismatches: 46, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
142 2 0.01
143 16 0.05
144 93 0.29
145 121 0.37
146 90 0.28
147 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (145 bp):
AAGGGTATTTTCATAATTTGGCCTTCCCAACTTGGATTTTCATGAAACTTTTCAGATCTTAATTT
CATAATATTTCATAATTTTTGGTGCATTTGAAATCATAGCAGTACCCCAGAGAAGTGTGAAATTA
CCAAAATACCCCTAT
Found at i:15185868 original size:18 final size:18
Alignment explanation
Indices: 15185845--15185879 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
15185835 ATGTTGTCCT
*
15185845 TGCATATGGGTCTTGTTA
1 TGCATATGGGTCATGTTA
15185863 TGCATATGGGTCATGTT
1 TGCATATGGGTCATGTT
15185880 TGATACTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.11, G:0.29, T:0.43
Consensus pattern (18 bp):
TGCATATGGGTCATGTTA
Found at i:15188171 original size:3 final size:3
Alignment explanation
Indices: 15188163--15188192 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
15188153 TTAATTCTTT
15188163 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
15188193 ATAATAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CTA
Found at i:15188197 original size:3 final size:3
Alignment explanation
Indices: 15188191--15188289 Score: 135
Period size: 3 Copynumber: 33.0 Consensus size: 3
15188181 CTACTACTAC
15188191 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * *
15188239 TAA TAA TAA TAA TAA CAA CAA AAA CAA TAA CAA TAA CAA CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
15188287 TAA
1 TAA
15188290 AAAGGGAAAC
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 88 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:15188941 original size:2 final size:2
Alignment explanation
Indices: 15188936--15188968 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15188926 TTATATATAT
15188936 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
15188969 TTCATACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:15190478 original size:15 final size:17
Alignment explanation
Indices: 15190452--15190484 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15190442 CTTGAAGCAA
15190452 AAAAAGAGAAA-TTGAG
1 AAAAAGAGAAATTTGAG
15190468 AAAAAGA-AAATTTGAG
1 AAAAAGAGAAATTTGAG
15190484 A
1 A
15190485 CTCCAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.64, C:0.00, G:0.21, T:0.15
Consensus pattern (17 bp):
AAAAAGAGAAATTTGAG
Found at i:15202269 original size:63 final size:63
Alignment explanation
Indices: 15202167--15202303 Score: 147
Period size: 63 Copynumber: 2.2 Consensus size: 63
15202157 AAATATTAAG
* *
15202167 GATTATTTAAGGCGTTTTTAATTGGAAAATGCTTCAAATAATCCCCTT-TATTTTTTTAAAA-GA
1 GATTATTTAAGGCATTTTTAATTGAAAAATGCTTCAAATAAT--CCTTATATTTTTTTAAAAGGA
* * *
15202230 GATTATTTAAGGCATTTTTAGTCT-AAAAATATCTT-AAATAATCTTTAATATTTTTTTAAAAGG
1 GATTATTTAAGGCATTTTTAAT-TGAAAAAT-GCTTCAAATAATCCTT-ATATTTTTTTAAAAGG
*
15202293 G
63 A
15202294 GATTATTTAA
1 GATTATTTAA
15202304 AGGGTTTTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
61 3 0.05
63 45 0.71
64 15 0.24
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.45
Consensus pattern (63 bp):
GATTATTTAAGGCATTTTTAATTGAAAAATGCTTCAAATAATCCTTATATTTTTTTAAAAGGA
Found at i:15202478 original size:63 final size:61
Alignment explanation
Indices: 15202399--15202542 Score: 166
Period size: 63 Copynumber: 2.3 Consensus size: 61
15202389 TTTTTTTGAC
* *
15202399 AAAAAAATACCTTAAATAATCCCCTTTAAAATGTATCAAAAG-ATTATTTAAGACGCTTT-TGGT
1 AAAAAAAT--CTTAAATAATCCCCTTTAAAAT-TATAAAAAGCATTATTAAAGACG-TTTGTGG-
15202462 T
61 T
* * * *
15202463 CAAAAACATTTTAAATAATCCCTTTTAAAATTTTAAAAAGCATTATTAAAGACGTTTGTGGT
1 -AAAAAAATCTTAAATAATCCCCTTTAAAATTATAAAAAGCATTATTAAAGACGTTTGTGGT
15202525 AAAAAAATCTTAAATAAT
1 AAAAAAATCTTAAATAAT
15202543 ACTCTTCAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
61 16 0.23
62 11 0.16
63 35 0.51
65 7 0.10
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (61 bp):
AAAAAAATCTTAAATAATCCCCTTTAAAATTATAAAAAGCATTATTAAAGACGTTTGTGGT
Found at i:15206073 original size:147 final size:145
Alignment explanation
Indices: 15205828--15206255 Score: 450
Period size: 148 Copynumber: 2.9 Consensus size: 145
15205818 AAAAGGAATA
* * * * * *
15205828 AGGATTCAGGGCAAAAAGTGAATAAAATTTTAGTTACAATCTCAAGTAAAAAAAAGATAGAATTC
1 AGGATTCAAGGTAAAAAGTGAATAAAGTTTTACTTAGAATCT-AAGTAAAAAGAAGATAGAATTC
* *
15205893 AAGAAAGTAAAATGCTAAAGTTGAAGTTAAATGTTTTCAAAAAA-AAAAAGTAAAAAAGAAAAAC
65 AAGAAAGTAAAATACTAAAGTTGAAGTTAAATGTTTTCAAAAAAGAAAGAGTAAAAAAGAAAAAC
15205957 ATGCACCTCAG-AGATG
130 ATGCACCT-AGAAGATG
* * * * *
15205973 A-GAGTTTAAGGTAAAAAAGTGAATACAGTTTTATTTAGAATCCTAAATAAAAAGGAAGAAAGAA
1 AGGA-TTCAAGGT-AAAAAGTGAATAAAGTTTTACTTAGAAT-CTAAGTAAAAA-GAAGATAGAA
* * * * * *
15206037 TTCAAGAAAGTAGAATACTAAAGATGATGTTGAATGTTTCCAAAAAATAAAGAGTAAAAAAGAAA
62 TTCAAGAAAGTAAAATACTAAAGTTGAAGTTAAATGTTTTCAAAAAAGAAAGAGTAAAAAAGAAA
* * *
15206102 GACATGTACCTTGAAGATG
127 AACATGCACCTAGAAGATG
* * * *
15206121 AGGATTCAGGGTAAAAAGTGAA-AATAGTTTCACTTAGAATTTTAGGTAAAAAAAGAAGATAGAA
1 AGGATTCAAGGTAAAAAGTGAATAA-AGTTTTACTTAGAA-TCTAAGT--AAAAAGAAGATAGAA
* * * * *
15206185 TTCAAGAAAATAAAATACTGAAGTTGAAGTCAAATATTTTCAAAAAAGAAAGAGCAAAGAAAGAA
62 TTCAAGAAAGTAAAATACTAAAGTTGAAGTTAAATGTTTTCAAAAAAGAAAGAGTAAA-AAAGAA
15206250 AAACAT
126 AAACAT
15206256 AAGATTTTTT
Statistics
Matches: 230, Mismatches: 41, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
144 2 0.01
145 6 0.03
146 33 0.14
147 77 0.33
148 94 0.41
149 18 0.08
ACGTcount: A:0.52, C:0.07, G:0.18, T:0.23
Consensus pattern (145 bp):
AGGATTCAAGGTAAAAAGTGAATAAAGTTTTACTTAGAATCTAAGTAAAAAGAAGATAGAATTCA
AGAAAGTAAAATACTAAAGTTGAAGTTAAATGTTTTCAAAAAAGAAAGAGTAAAAAAGAAAAACA
TGCACCTAGAAGATG
Found at i:15207539 original size:15 final size:15
Alignment explanation
Indices: 15207519--15207548 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15207509 CATGAAAAAA
*
15207519 TTACATTTGCATCAT
1 TTACATGTGCATCAT
15207534 TTACATGTGCATCAT
1 TTACATGTGCATCAT
15207549 GAGAAAGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (15 bp):
TTACATGTGCATCAT
Found at i:15207675 original size:26 final size:26
Alignment explanation
Indices: 15207646--15207704 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
15207636 TACATCATCA
* ** *
15207646 GCATCATAACCAAGGCATTTTCATTT
1 GCATCATAACAAAAACATTTACATTT
*
15207672 GCATCATAAGAAAAACATTTACATTT
1 GCATCATAACAAAAACATTTACATTT
15207698 GCATCAT
1 GCATCAT
15207705 TGCATCTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
GCATCATAACAAAAACATTTACATTT
Found at i:15207952 original size:18 final size:19
Alignment explanation
Indices: 15207929--15207977 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
15207919 TTAAGTAGTA
15207929 AAAAAAAAGAAGA-AAAAG
1 AAAAAAAAGAAGAGAAAAG
*
15207947 AAAAAAATG-AGAGAAAAG
1 AAAAAAAAGAAGAGAAAAG
15207965 AAAAAATAAGAAG
1 AAAAAA-AAGAAG
15207978 TTTTTTACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 3 0.12
18 19 0.73
19 2 0.08
20 2 0.08
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (19 bp):
AAAAAAAAGAAGAGAAAAG
Found at i:15208097 original size:6 final size:6
Alignment explanation
Indices: 15208088--15208191 Score: 52
Period size: 6 Copynumber: 15.8 Consensus size: 6
15208078 ATGAAAAGGG
*
15208088 AAAAAT AAAAA- ATAAAAT AAAAA- AGAAAAGC AAAAAT CAAAAAAT GAAAAAT
1 AAAAAT AAAAAT A-AAAAT AAAAAT A-AAAA-T AAAAAT --AAAAAT -AAAAAT
* *
15208140 GAAAAAT GAAAAACG AAAAAC AAAAA- ACAAAAT AAAAAAAT AAAAAT
1 -AAAAAT -AAAAA-T AAAAAT AAAAAT A-AAAAT --AAAAAT AAAAAT
15208187 AAAAA
1 AAAAA
15208192 ACGAAAAACG
Statistics
Matches: 82, Mismatches: 4, Indels: 24
0.75 0.04 0.22
Matches are distributed among these distances:
5 3 0.04
6 37 0.45
7 29 0.35
8 12 0.15
9 1 0.01
ACGTcount: A:0.80, C:0.05, G:0.06, T:0.10
Consensus pattern (6 bp):
AAAAAT
Found at i:15208098 original size:7 final size:7
Alignment explanation
Indices: 15208088--15208192 Score: 63
Period size: 7 Copynumber: 14.7 Consensus size: 7
15208078 ATGAAAAGGG
15208088 AAAAATA
1 AAAAATA
15208095 AAAAATA
1 AAAAATA
15208102 AAATAA-A
1 AAA-AATA
*
15208109 AAAGAAAA
1 AAA-AATA
15208117 GCAAAAATCA
1 --AAAAAT-A
*
15208127 AAAAATG
1 AAAAATA
*
15208134 AAAAATG
1 AAAAATA
*
15208141 AAAAATG
1 AAAAATA
**
15208148 AAAAACG
1 AAAAATA
*
15208155 AAAAACA
1 AAAAATA
*
15208162 AAAAACA
1 AAAAATA
*
15208169 AAATA-A
1 AAAAATA
15208175 AAAAAT-
1 AAAAATA
15208181 AAAAATA
1 AAAAATA
15208188 AAAAA
1 AAAAA
15208193 CGAAAAACGA
Statistics
Matches: 84, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
6 11 0.13
7 58 0.69
8 9 0.11
9 2 0.02
10 4 0.05
ACGTcount: A:0.80, C:0.05, G:0.06, T:0.10
Consensus pattern (7 bp):
AAAAATA
Found at i:15208137 original size:14 final size:14
Alignment explanation
Indices: 15208101--15208293 Score: 133
Period size: 14 Copynumber: 14.0 Consensus size: 14
15208091 AATAAAAAAT
*
15208101 AAAATAAAAAA-GA
1 AAAACAAAAAACGA
* * *
15208114 AAAGCAAAAATCAA
1 AAAACAAAAAACGA
** *
15208128 AAAATGAAAAATGA
1 AAAACAAAAAACGA
**
15208142 AAAATGAAAAACGA
1 AAAACAAAAAACGA
15208156 AAAACAAAAAAC-A
1 AAAACAAAAAACGA
*
15208169 AAATA-AAAAAA-TA
1 AAA-ACAAAAAACGA
*
15208182 AAAATAAAAAACGA
1 AAAACAAAAAACGA
*
15208196 AAAACGAAAAACGA
1 AAAACAAAAAACGA
** * *
15208210 AAAATGAAATATGA
1 AAAACAAAAAACGA
* ** * *
15208224 AATATGAAATATGA
1 AAAACAAAAAACGA
*
15208238 AAAACGAAAAACGA
1 AAAACAAAAAACGA
*
15208252 AAAACAAAAAACAA
1 AAAACAAAAAACGA
*
15208266 AAAACAAAAAATGA
1 AAAACAAAAAACGA
15208280 AAAACAAAAAACGA
1 AAAACAAAAAACGA
15208294 GAAATGAAAG
Statistics
Matches: 146, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
12 1 0.01
13 28 0.19
14 117 0.80
ACGTcount: A:0.75, C:0.08, G:0.09, T:0.08
Consensus pattern (14 bp):
AAAACAAAAAACGA
Found at i:15208198 original size:7 final size:7
Alignment explanation
Indices: 15208188--15208293 Score: 104
Period size: 7 Copynumber: 15.1 Consensus size: 7
15208178 AATAAAAATA
15208188 AAAAACG
1 AAAAACG
15208195 AAAAACG
1 AAAAACG
15208202 AAAAACG
1 AAAAACG
*
15208209 AAAAATG
1 AAAAACG
* *
15208216 AAATATG
1 AAAAACG
* *
15208223 AAATATG
1 AAAAACG
* *
15208230 AAATATG
1 AAAAACG
15208237 AAAAACG
1 AAAAACG
15208244 AAAAACG
1 AAAAACG
*
15208251 AAAAACA
1 AAAAACG
*
15208258 AAAAACA
1 AAAAACG
*
15208265 AAAAACA
1 AAAAACG
*
15208272 AAAAATG
1 AAAAACG
*
15208279 AAAAACA
1 AAAAACG
15208286 AAAAACG
1 AAAAACG
15208293 A
1 A
15208294 GAAATGAAAG
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 89 1.00
ACGTcount: A:0.73, C:0.09, G:0.10, T:0.08
Consensus pattern (7 bp):
AAAAACG
Found at i:15208290 original size:21 final size:21
Alignment explanation
Indices: 15208088--15208302 Score: 136
Period size: 21 Copynumber: 10.5 Consensus size: 21
15208078 ATGAAAAGGG
* *
15208088 AAAAAT-AAAAA-ATAAAATA
1 AAAAATGAAAAACAAAAAACA
* *
15208107 AAAAA-GAAAAGCAAAAATCA
1 AAAAATGAAAAACAAAAAACA
** **
15208127 AAAAATGAAAAATGAAAAATG
1 AAAAATGAAAAACAAAAAACA
*
15208148 AAAAACGAAAAACAAAAAACA
1 AAAAATGAAAAACAAAAAACA
* *
15208169 AAATAA--AAAAA-TAAAAATA
1 AAA-AATGAAAAACAAAAAACA
* * *
15208188 AAAAACGAAAAACGAAAAACG
1 AAAAATGAAAAACAAAAAACA
* ** * **
15208209 AAAAATGAAATATGAAATATG
1 AAAAATGAAAAACAAAAAACA
* * *
15208230 AAATATGAAAAACGAAAAACG
1 AAAAATGAAAAACAAAAAACA
**
15208251 AAAAACAAAAAACAAAAAACA
1 AAAAATGAAAAACAAAAAACA
*
15208272 AAAAATGAAAAACAAAAAACG
1 AAAAATGAAAAACAAAAAACA
*
15208293 AGAAATGAAA
1 AAAAATGAAA
15208303 GTTGAAAAAA
Statistics
Matches: 150, Mismatches: 39, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
18 2 0.01
19 18 0.12
20 20 0.13
21 108 0.72
22 2 0.01
ACGTcount: A:0.75, C:0.07, G:0.09, T:0.09
Consensus pattern (21 bp):
AAAAATGAAAAACAAAAAACA
Found at i:15208322 original size:11 final size:11
Alignment explanation
Indices: 15208306--15208366 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 11
15208296 AATGAAAGTT
15208306 GAAAAAAAAAA
1 GAAAAAAAAAA
*
15208317 GAAAAAAAAAG
1 GAAAAAAAAAA
15208328 GAAAAATAGCCAAAA
1 GAAAAA-A---AAAA
* *
15208343 -AAAAAGACAA
1 GAAAAAAAAAA
15208353 GAAAAAAAAAA
1 GAAAAAAAAAA
15208364 GAA
1 GAA
15208367 GTCTATCATG
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
10 3 0.08
11 27 0.69
12 1 0.03
14 5 0.13
15 3 0.08
ACGTcount: A:0.80, C:0.05, G:0.13, T:0.02
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:15208587 original size:32 final size:32
Alignment explanation
Indices: 15208533--15208665 Score: 131
Period size: 32 Copynumber: 4.2 Consensus size: 32
15208523 ACAAGATAAG
* * *
15208533 AACTAAGCCTAGTCAAGTTGGCATCCAGATCA
1 AACTAAGCCCAGTCAAGCTGGCACCCAGATCA
* * *
15208565 AACTAAGCCCAATCAAACTGGCACCCAGATTA
1 AACTAAGCCCAGTCAAGCTGGCACCCAGATCA
* ** *
15208597 AACTAAGCCTAGTCTTGCTGGCACCCAAATCA
1 AACTAAGCCCAGTCAAGCTGGCACCCAGATCA
* * ** *
15208629 AACTAAGCCCAGTCTAGCTAGCAATCAAATCA
1 AACTAAGCCCAGTCAAGCTGGCACCCAGATCA
15208661 AACTA
1 AACTA
15208666 GTCCAATTTA
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 83 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.20
Consensus pattern (32 bp):
AACTAAGCCCAGTCAAGCTGGCACCCAGATCA
Found at i:15208664 original size:64 final size:64
Alignment explanation
Indices: 15208533--15208665 Score: 149
Period size: 64 Copynumber: 2.1 Consensus size: 64
15208523 ACAAGATAAG
* * * * * * *
15208533 AACTAAGCCTAGTCAAGTTGGCATCCAGATCAAACTAAGCCCAATCAAACTGGCACCCAGATTA
1 AACTAAGCCTAGTCAAGCTGGCACCCAAATCAAACTAAGCCCAATCAAACTAGCAACCAAATCA
** * * * *
15208597 AACTAAGCCTAGTCTTGCTGGCACCCAAATCAAACTAAGCCCAGTCTAGCTAGCAATCAAATCA
1 AACTAAGCCTAGTCAAGCTGGCACCCAAATCAAACTAAGCCCAATCAAACTAGCAACCAAATCA
15208661 AACTA
1 AACTA
15208666 GTCCAATTTA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.20
Consensus pattern (64 bp):
AACTAAGCCTAGTCAAGCTGGCACCCAAATCAAACTAAGCCCAATCAAACTAGCAACCAAATCA
Found at i:15208760 original size:22 final size:22
Alignment explanation
Indices: 15208710--15208768 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
15208700 TTCAAGCATA
* *
15208710 ATTTGTAAGAATTTCGGGCATAAT
1 ATTT-TAA-AATTTCGGGCAAAAC
* *
15208734 TTTTTAAATTTTCGGGCAAAAC
1 ATTTTAAAATTTCGGGCAAAAC
15208756 ATTTTAAAATTTC
1 ATTTTAAAATTTC
15208769 AAAGTTTCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
22 23 0.79
23 3 0.10
24 3 0.10
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (22 bp):
ATTTTAAAATTTCGGGCAAAAC
Found at i:15209003 original size:15 final size:15
Alignment explanation
Indices: 15208983--15209016 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
15208973 TTTGTTGATT
15208983 AAAAAAAT-AAAATA
1 AAAAAAATCAAAATA
15208997 AAAAAAATCAAAATA
1 AAAAAAATCAAAATA
15209012 AAAAA
1 AAAAA
15209017 TGAAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAAAAATCAAAATA
Found at i:15222462 original size:19 final size:19
Alignment explanation
Indices: 15222440--15222478 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15222430 GATTTGGCAT
*
15222440 TCCTACTTTGACTAA-GAAA
1 TCCTACCTTGA-TAAGGAAA
15222459 TCCTACCTTGATAAGGAAA
1 TCCTACCTTGATAAGGAAA
15222478 T
1 T
15222479 ACTAATTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.31
Consensus pattern (19 bp):
TCCTACCTTGATAAGGAAA
Found at i:15224862 original size:20 final size:20
Alignment explanation
Indices: 15224834--15224885 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
15224824 TATGGAGTTG
*
15224834 AAGATGATGAATCTTAAAAA
1 AAGAAGATGAATCTTAAAAA
15224854 AAGAAGATGAATCTTAAAAA
1 AAGAAGATGAATCTTAAAAA
*
15224874 AAGAAAATGAAT
1 AAGAAGATGAAT
15224886 ATTCATGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.60, C:0.04, G:0.15, T:0.21
Consensus pattern (20 bp):
AAGAAGATGAATCTTAAAAA
Found at i:15229349 original size:21 final size:21
Alignment explanation
Indices: 15229325--15229365 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15229315 GAAAGAGAGA
*
15229325 AAATTTGTGTCTAAATTTTTC
1 AAATTTGTGTCAAAATTTTTC
* *
15229346 AAATTTTTTTCAAAATTTTT
1 AAATTTGTGTCAAAATTTTT
15229366 ATTTTGAGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (21 bp):
AAATTTGTGTCAAAATTTTTC
Found at i:15244343 original size:58 final size:58
Alignment explanation
Indices: 15243994--15244330 Score: 338
Period size: 58 Copynumber: 5.7 Consensus size: 58
15243984 TTTTGTATAG
* * * * *
15243994 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATCTTTTAG-AAACTTTAATTTTGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAAC-TTATTTTTAA
* * * *
15244052 GAAAAATTAACACTTTCAACTTTTCCTCAAAAA-ACTTTTTTTGAAAAATTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAACTTATTTTTAA
* * * ** * *
15244110 GAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAACCTTTTTGAAAATTTATTTTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCT--CAAAAATATTTTTTTGAAAACTTA--TTTTTAA
* * ** *
15244172 GGAAATTTGATACTTTCAACTTTTCCTCAAAATATTTTTTTTTTGGAAGGCTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-A-TATTTTTTT-GAAAACTTATTTTTAA
* * * *
15244233 GGAAAATTGATACTTTTAACTTTTCCTCAAAAATCTATTTCTGAAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAACTTATTTTTAA
15244291 GGAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTT
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTT
15244331 CCTTGAAATT
Statistics
Matches: 229, Mismatches: 39, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
57 1 0.00
58 111 0.48
59 15 0.07
60 23 0.10
61 37 0.16
62 36 0.16
63 6 0.03
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAACTTATTTTTAA
Found at i:15246814 original size:10 final size:10
Alignment explanation
Indices: 15246780--15246814 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
15246770 CTCAACTGGA
15246780 TTTTTTTTACC
1 TTTTTTTTA-C
15246791 TTTTTTTTAC
1 TTTTTTTTAC
15246801 TTTTTTTTA-
1 TTTTTTTTAC
15246810 TTTTT
1 TTTTT
15246815 AAAATTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 5 0.21
10 10 0.42
11 9 0.38
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTTTTAC
Found at i:15247077 original size:104 final size:106
Alignment explanation
Indices: 15246802--15247112 Score: 520
Period size: 106 Copynumber: 2.9 Consensus size: 106
15246792 TTTTTTTACT
*
15246802 TTTTTTTATTTTTAAAATTTTGATCAAAGCTCCTCTAGGCAGAGGCTCAATGACTTTGAGAAACA
1 TTTTTTT-TTTTT-AAATTTTGATCAAAGCTCCTCTAGGCAGAGGCTCAACGACTTTGAGAAACA
15246867 TAAACAAAGCTCCTCTAAACAGAGGTAATTTTTTTTGTTTTTG
64 TAAACAAAGCTCCTCTAAACAGAGGTAATTTTTTTTGTTTTTG
* * * *
15246910 TTTTTTTTTTTTAAATTTTGACCAAAACTCCTCTAAGTAGAGGCTCAACGACTTTGAGAAACATA
1 TTTTTTTTTTTTAAATTTTGATCAAAGCTCCTCTAGGCAGAGGCTCAACGACTTTGAGAAACATA
*
15246975 AACAAAGCTCTTCTAAACAGAGGTAA-TTTTTTTGTTTTT-
66 AACAAAGCTCCTCTAAACAGAGGTAATTTTTTTTGTTTTTG
15247014 TGTTTTTTTTTTTAAA-TTTGATCAAAGCTCCTCTAGGCAGAGGCTCAACGACTTTGAGAAACAT
1 T-TTTTTTTTTTTAAATTTTGATCAAAGCTCCTCTAGGCAGAGGCTCAACGACTTTGAGAAACAT
15247078 AAACAAAGCTCCTCTAAACAGAGGTAATTTTTTTT
65 AAACAAAGCTCCTCTAAACAGAGGTAATTTTTTTT
15247113 TAAAATTTTG
Statistics
Matches: 190, Mismatches: 11, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
104 71 0.37
105 34 0.18
106 73 0.38
107 5 0.03
108 7 0.04
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (106 bp):
TTTTTTTTTTTTAAATTTTGATCAAAGCTCCTCTAGGCAGAGGCTCAACGACTTTGAGAAACATA
AACAAAGCTCCTCTAAACAGAGGTAATTTTTTTTGTTTTTG
Found at i:15247185 original size:41 final size:41
Alignment explanation
Indices: 15247129--15247435 Score: 330
Period size: 41 Copynumber: 7.4 Consensus size: 41
15247119 TTTGATCAAA
*
15247129 GCTCCTCTAAGCAGAGGCTCAACGATTTTGAGAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGATTTTGAGAAATAAATG
*
15247170 GCTCCTCTAATCAGAGACTCAACGATTTTGAGAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGATTTTGAGAAATAAATG
* * *
15247211 GCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGATTTTGAGAAATAAATG
* * * *
15247252 GCTCATCTAATAAGAGGTTCAACGACTTTGAGAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGATTTTGAGAAATAAATG
* * * *
15247293 GCTCCTCTAATCAGAGGCCCAATGACTTTGGAAAAATAAATG
1 GCTCCTCTAATCAGAGGCTCAACGA-TTTTGAGAAATAAATG
* * * * * * *
15247335 GCTCCTTTAATCAGAGTCTCAACAACTTTCAAAAAGTAAATT
1 GCTCCTCTAATCAGAGGCTCAACGATTTTGAGAAA-TAAATG
* * * * *
15247377 GCTCCTCTAAAT-AAAGGCACCACAATTTTG-GAAAATAAATT
1 GCTCCTCT-AATCAGAGGCTCAACGATTTTGAG-AAATAAATG
*
15247418 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAATCAGAGGC
15247436 ACCATGACTT
Statistics
Matches: 223, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
40 2 0.01
41 158 0.71
42 60 0.27
43 3 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (41 bp):
GCTCCTCTAATCAGAGGCTCAACGATTTTGAGAAATAAATG
Found at i:15248521 original size:62 final size:63
Alignment explanation
Indices: 15248419--15248538 Score: 188
Period size: 62 Copynumber: 1.9 Consensus size: 63
15248409 GCTTATCAGC
* * * *
15248419 ACTAACCATTTCAAAATAAATTTTATCTTCTGTCACTTGGTCATTATT-ATAAGCTTCTCAAT
1 ACTAACCATTTCAAAACAAATTTCATCATCTGTCACTTGGTCATCATTCATAAGCTTCTCAAT
*
15248481 ACTAGCCATTTCAAAACAAATTTCATCATCTGTCACTTGGTCATCATTCATAAGCTTC
1 ACTAACCATTTCAAAACAAATTTCATCATCTGTCACTTGGTCATCATTCATAAGCTTC
15248539 ATTGCCCCAT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
62 43 0.83
63 9 0.17
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (63 bp):
ACTAACCATTTCAAAACAAATTTCATCATCTGTCACTTGGTCATCATTCATAAGCTTCTCAAT
Found at i:15249237 original size:20 final size:20
Alignment explanation
Indices: 15249213--15249259 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
15249203 ATTTGAATCT
*
15249213 TTTTTTTTTTTCATTTTCTCA
1 TTTTTTTCTTTCATTTTC-CA
**
15249234 TTTTTTTCTTTGTTTTTCCA
1 TTTTTTTCTTTCATTTTCCA
15249254 TTTTTT
1 TTTTTT
15249260 CATTTTTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.79
Consensus pattern (20 bp):
TTTTTTTCTTTCATTTTCCA
Found at i:15249239 original size:10 final size:8
Alignment explanation
Indices: 15249218--15249284 Score: 62
Period size: 8 Copynumber: 7.6 Consensus size: 8
15249208 AATCTTTTTT
15249218 TTTTTTCA
1 TTTTTTCA
*
15249226 TTTTCTCA
1 TTTTTTCA
*
15249234 TTTTTTTCTT
1 -TTTTTTC-A
15249244 TGTTTTTCCA
1 T-TTTTT-CA
15249254 TTTTTTCA
1 TTTTTTCA
15249262 TTTTTTCA
1 TTTTTTCA
15249270 TTTTTCATCA
1 TTTTT--TCA
15249280 TTTTT
1 TTTTT
15249285 CATCCATTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
8 22 0.45
9 12 0.24
10 14 0.29
11 1 0.02
ACGTcount: A:0.10, C:0.15, G:0.01, T:0.73
Consensus pattern (8 bp):
TTTTTTCA
Found at i:15249239 original size:17 final size:17
Alignment explanation
Indices: 15249217--15249284 Score: 66
Period size: 17 Copynumber: 3.8 Consensus size: 17
15249207 GAATCTTTTT
*
15249217 TTTTTTTCATTTTCTCA
1 TTTTTTTCATTTTTTCA
*
15249234 TTTTTTTCTTTGTTTTTCCA
1 TTTTTTTC-AT-TTTTT-CA
15249254 -TTTTTTCATTTTTTCA
1 TTTTTTTCATTTTTTCA
*
15249270 TTTTTCATCATTTTT
1 TTTTT-TTCATTTTT
15249285 CATCCATTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
16 2 0.05
17 17 0.40
18 10 0.24
19 11 0.26
20 2 0.05
ACGTcount: A:0.10, C:0.15, G:0.01, T:0.74
Consensus pattern (17 bp):
TTTTTTTCATTTTTTCA
Found at i:15254120 original size:58 final size:58
Alignment explanation
Indices: 15254050--15254424 Score: 386
Period size: 58 Copynumber: 6.6 Consensus size: 58
15254040 ATTACTTTTG
* * *
15254050 TACTTTCAACTTTTTCTCAAAAATAC-TTTCTGAAAACTTTAATTTTGAGGAAAATTGA
1 TACTTTCAACTTTTCCTCAAAAATACTTTTTTGAAAA-TTTAATTTTAAGGAAAATTGA
*
15254108 CACTTTCAACTTTTCCTCAAAAA-ACTTTTTTTG---A---AA----AAGGAAAATTGA
1 TACTTTCAACTTTTCCTCAAAAATAC-TTTTTTGAAAATTTAATTTTAAGGAAAATTGA
* * ** *
15254156 TACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAACTTTAATTTCGAGAAAAATTGA
1 TACTTTCAACTTTTCCTCAAAAATACTTTTTT-GAAAATTTAATTTTAAGGAAAATTGA
* * *
15254214 TACTTTCAACTTTTCCTCAAAAAAAACCTTTTTTGAAAATTTATCTTTTTTAGGAAAATTGA
1 TACTTTCAACTTTTCCTC-AAAAATA-CTTTTTTGAAAATTTA--ATTTTAAGGAAAATTGA
* *
15254276 TACTTTCAACTTTTCCTCAAAAA-ACTCTTTTTTTGAAAATTTATTTTTAAGAAAAATTGA
1 TACTTTCAACTTTTCCTCAAAAATA--C-TTTTTTGAAAATTTAATTTTAAGGAAAATTGA
* *
15254336 TACTTTCAACTTTTCCTCAAAAAT-CTATTTTTGAAAACTTATTTTTAAGGAAAATTGA
1 TACTTTCAACTTTTCCTCAAAAATACT-TTTTTGAAAATTTAATTTTAAGGAAAATTGA
*
15254394 TACTTTTAACTTTTCCTCAAAAATA-TTTTTT
1 TACTTTCAACTTTTCCTCAAAAATACTTTTTT
15254425 CCTTCAAATT
Statistics
Matches: 271, Mismatches: 22, Indels: 49
0.79 0.06 0.14
Matches are distributed among these distances:
47 6 0.02
48 33 0.12
49 1 0.00
52 2 0.01
54 2 0.01
56 1 0.00
57 8 0.03
58 102 0.38
59 11 0.04
60 47 0.17
61 12 0.04
62 46 0.17
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.43
Consensus pattern (58 bp):
TACTTTCAACTTTTCCTCAAAAATACTTTTTTGAAAATTTAATTTTAAGGAAAATTGA
Found at i:15254152 original size:48 final size:48
Alignment explanation
Indices: 15254097--15254191 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 48
15254087 TTTAATTTTG
* *
15254097 AGGAAAATTGACACTTTCAACTTTTCCTCAAAAA-ACTTTTTTTGAAAA
1 AGGAAAATTGACACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAAA
*
15254145 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA
1 AGGAAAATTGACACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA
15254192 CTTTAATTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 42 0.98
49 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (48 bp):
AGGAAAATTGACACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAA
Found at i:15254210 original size:106 final size:107
Alignment explanation
Indices: 15254050--15254424 Score: 356
Period size: 106 Copynumber: 3.3 Consensus size: 107
15254040 ATTACTTTTG
* * * * * * *
15254050 TACTTTCAACTTTTTCTCAAAAATACTTTCTGAAAACTTTAATTTTGAGGAAAATTGACACTTTC
1 TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTAATTTTGAGAAAAATTGATACTTTC
15254115 AACTTTTCCTCAAAAAACTTTTTTTGAAAA-AGGAAAATTGA
66 AACTTTTCCTCAAAAAACTTTTTTTGAAAATAGGAAAATTGA
*
15254156 TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTAATTTCGAGAAAAATTGATACTTTC
1 TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTAATTTTGAGAAAAATTGATACTTTC
*
15254221 AACTTTTCCTCAAAAAAAACCTTTTTTGAAAATTTATCTTTTTTAGGAAAATTGA
66 AACTTTTCCTC--AAAAAACTTTTTTTG-AAA---A-------TAGGAAAATTGA
* * * * * *
15254276 TACTTTCAACTTTTCCTCAAAAAACTCTTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACTT
1 TACTTTCAACTTTTCC-CCAAAAA-TATTTTTTGGAAACTTTAATTTTGAGAAAAATTGATACTT
* *
15254341 TCAACTTTTCCTCAAAAATCTATTTTTGAAAACTTATTTTTAAGGAAAATTGA
64 TCAACTTTTCCTCAAAAAACTTTTTTTG-AAA---A----T-AGGAAAATTGA
* *
15254394 TACTTTTAACTTTTCCTCAAAAATATTTTTT
1 TACTTTCAACTTTTCCCCAAAAATATTTTTT
15254425 CCTTCAAATT
Statistics
Matches: 228, Mismatches: 24, Indels: 24
0.83 0.09 0.09
Matches are distributed among these distances:
106 68 0.30
108 14 0.06
109 3 0.01
112 1 0.00
116 7 0.03
117 10 0.04
118 26 0.11
120 46 0.20
121 6 0.03
122 47 0.21
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.43
Consensus pattern (107 bp):
TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTAATTTTGAGAAAAATTGATACTTTC
AACTTTTCCTCAAAAAACTTTTTTTGAAAATAGGAAAATTGA
Found at i:15266996 original size:1 final size:1
Alignment explanation
Indices: 15266990--15267018 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
15266980 ATGACACCAT
15266990 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15267019 CTTAATGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:15272940 original size:183 final size:183
Alignment explanation
Indices: 15272632--15272998 Score: 707
Period size: 183 Copynumber: 2.0 Consensus size: 183
15272622 GACAACGAGG
15272632 AACAAAGCAGACAATTTAAAAAATAAATAAAATAAAATCATGATCAAAACATTGCATGTAAAATC
1 AACAAAGCAGACAATTTAAAAAATAAATAAAATAAAATCATGATCAAAACATTGCATGTAAAATC
15272697 ATATTATAGCAATGCAAATTAAAAGGATCTAATATCAAAAAATTTTAGGAAAACTAGTCCAGTAC
66 ATATTATAGCAATGCAAATTAAAAGGATCTAATATCAAAAAATTTTAGGAAAACTAGTCCAGTAC
15272762 CTATTGTGATTGATTCTTCTTTTGGAAGCTACTCCTTTATTCACTATGCATGA
131 CTATTGTGATTGATTCTTCTTTTGGAAGCTACTCCTTTATTCACTATGCATGA
*
15272815 AACAAAGTAGACAATTTAAAAAATAAATAAAATAAAATCATGATCAAAACATTGCATGTAAAATC
1 AACAAAGCAGACAATTTAAAAAATAAATAAAATAAAATCATGATCAAAACATTGCATGTAAAATC
15272880 ATATTATAGCAATGCAAATTAAAAGGATCTAATATCAAAAAATTTTAGGAAAACTAGTCCAGTAC
66 ATATTATAGCAATGCAAATTAAAAGGATCTAATATCAAAAAATTTTAGGAAAACTAGTCCAGTAC
* *
15272945 CTATTGTGATTGATTCTTCTTTTGGAAGTTATTCCTTTATTCACTATGCATGA
131 CTATTGTGATTGATTCTTCTTTTGGAAGCTACTCCTTTATTCACTATGCATGA
15272998 A
1 A
15272999 TGTTCAAGAT
Statistics
Matches: 181, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 181 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.31
Consensus pattern (183 bp):
AACAAAGCAGACAATTTAAAAAATAAATAAAATAAAATCATGATCAAAACATTGCATGTAAAATC
ATATTATAGCAATGCAAATTAAAAGGATCTAATATCAAAAAATTTTAGGAAAACTAGTCCAGTAC
CTATTGTGATTGATTCTTCTTTTGGAAGCTACTCCTTTATTCACTATGCATGA
Found at i:15274188 original size:5 final size:5
Alignment explanation
Indices: 15274178--15274221 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
15274168 TAGATATATA
15274178 TATTG TATTG TATTG TATTG TATTG TATTG TATTG TATTG TATT
1 TATTG TATTG TATTG TATTG TATTG TATTG TATTG TATTG TATT
15274222 TAATAAATTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.20, C:0.00, G:0.18, T:0.61
Consensus pattern (5 bp):
TATTG
Found at i:15275489 original size:34 final size:34
Alignment explanation
Indices: 15275446--15275537 Score: 166
Period size: 34 Copynumber: 2.7 Consensus size: 34
15275436 CCATCTTTCA
*
15275446 TGAGTTTTAATGCATTTAAATAAATATGGTCAAG
1 TGAGTTTTAATGCATTTACATAAATATGGTCAAG
*
15275480 TGAGTTTTAATGCATTTACATAAATATGGTTAAG
1 TGAGTTTTAATGCATTTACATAAATATGGTCAAG
15275514 TGAGTTTTAATGCATTTACATAAA
1 TGAGTTTTAATGCATTTACATAAA
15275538 AATCATAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (34 bp):
TGAGTTTTAATGCATTTACATAAATATGGTCAAG
Found at i:15277574 original size:34 final size:32
Alignment explanation
Indices: 15277511--15277590 Score: 81
Period size: 33 Copynumber: 2.4 Consensus size: 32
15277501 GAAAATCCAT
* *
15277511 TTTTGAAAAGCTTTCAAAGCTTTGGAAATGAAA
1 TTTTG-AAAGCCTTCAAAGCTTTGAAAATGAAA
* *
15277544 TTTTGATAAGCCTTCAAAG-TTATCGAAAATGGAT
1 TTTTGA-AAGCCTTCAAAGCTT-T-GAAAATGAAA
15277578 TTTTGAAAGCCTT
1 TTTTGAAAGCCTT
15277591 TTAAAATTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 3 0.08
33 24 0.60
34 13 0.32
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.36
Consensus pattern (32 bp):
TTTTGAAAGCCTTCAAAGCTTTGAAAATGAAA
Found at i:15278243 original size:32 final size:33
Alignment explanation
Indices: 15278207--15278286 Score: 85
Period size: 33 Copynumber: 2.5 Consensus size: 33
15278197 ATTTTATCAT
15278207 ATTATGAGTAATAAAACAAATAGACCTTGTCC-
1 ATTATGAGTAATAAAACAAATAGACCTTGTCCG
* ** * *
15278239 ATTATAAAAAAATAAAACAAATAGGCTTTGTCCG
1 ATTAT-GAGTAATAAAACAAATAGACCTTGTCCG
15278273 ATTATG-GTAA-AAAA
1 ATTATGAGTAATAAAA
15278287 TATTTTTTTA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
31 4 0.11
32 7 0.18
33 22 0.58
34 5 0.13
ACGTcount: A:0.49, C:0.11, G:0.12, T:0.28
Consensus pattern (33 bp):
ATTATGAGTAATAAAACAAATAGACCTTGTCCG
Found at i:15279406 original size:2 final size:2
Alignment explanation
Indices: 15279399--15279425 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15279389 ATAAGGGTTT
15279399 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
15279426 CTATTTAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.