Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 88 of 129
Found at i:15711474 original size:72 final size:72
Alignment explanation
Indices: 15711392--15711548 Score: 174
Period size: 72 Copynumber: 2.2 Consensus size: 72
15711382 AGTTGGAAAG
** * * * ** *
15711392 ATAAAGATGACTAGG-ATGTCATTACAAGTTGAAAAAATAAAGATGA-TCGAGACAATATTGTAG
1 ATAAAGATGACTAGGAAAAT-ATTACAAGTTAAAAAAATAAAAATGACT-GAGACAACACCGTAA
15711455 GTCAAAAAA
64 GTCAAAAAA
* * *
15711464 ATAAATATGACTAGGAAAATATTGCAAGTTAAAAAAATAAAAATGACTTAGACAACACCGTAAGT
1 ATAAAGATGACTAGGAAAATATTACAAGTTAAAAAAATAAAAATGACTGAGACAACACCGTAAGT
15711529 CAAAAAA
66 CAAAAAA
*
15711536 ATAAAGATAACTA
1 ATAAAGATGACTA
15711549 AGACAACACC
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
72 67 0.96
73 3 0.04
ACGTcount: A:0.53, C:0.10, G:0.15, T:0.22
Consensus pattern (72 bp):
ATAAAGATGACTAGGAAAATATTACAAGTTAAAAAAATAAAAATGACTGAGACAACACCGTAAGT
CAAAAAA
Found at i:15711555 original size:36 final size:36
Alignment explanation
Indices: 15711423--15711652 Score: 150
Period size: 36 Copynumber: 6.4 Consensus size: 36
15711413 TTACAAGTTG
* * ** *
15711423 AAAAAATAAAGATGA-TCGAGACAATATTGTAGGTCA
1 AAAAAATAAAGATGACT-AAGACAACACCGTAAGTCA
* * * * ** * *
15711459 AAAAAATAAATATGACTAGGAAAATATTGCAAGTTA
1 AAAAAATAAAGATGACTAAGACAACACCGTAAGTCA
* *
15711495 AAAAAATAAAAATGACTTAGACAACACCGTAAGTCA
1 AAAAAATAAAGATGACTAAGACAACACCGTAAGTCA
* *
15711531 AAAAAATAAAGATAACTAAGACAACACC--AATGGTCG
1 AAAAAATAAAGATGACTAAGACAACACCGTAA--GTCA
* *
15711567 AAAAAATAAATATGAC-AA-A-AACAACGTCACAGATC-
1 AAAAAATAAAGATGACTAAGACAACACCGT-A-AG-TCA
* ** *
15711602 AAAAAATAAAGATGACTGAGACAACACTATAGGTCA
1 AAAAAATAAAGATGACTAAGACAACACCGTAAGTCA
15711638 AAAAAATAAAGATGA
1 AAAAAATAAAGATGA
15711653 TCGGGACAAT
Statistics
Matches: 153, Mismatches: 29, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
33 5 0.03
34 3 0.02
35 20 0.13
36 116 0.76
37 4 0.03
38 5 0.03
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.18
Consensus pattern (36 bp):
AAAAAATAAAGATGACTAAGACAACACCGTAAGTCA
Found at i:15712029 original size:26 final size:26
Alignment explanation
Indices: 15711989--15712059 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
15711979 GGATACAATA
**
15711989 ATGCAAATGTAAATGCCTTTCTTATG
1 ATGCAAATGTAAATGCCTTAATTATG
* * *
15712015 ATGCAAGTGTGAATGTCTTAATTATG
1 ATGCAAATGTAAATGCCTTAATTATG
15712041 ATGCAGATGATGTAAATGC
1 ATGCA-A--ATGTAAATGC
15712060 AAATGTCTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
26 26 0.76
27 1 0.03
29 7 0.21
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (26 bp):
ATGCAAATGTAAATGCCTTAATTATG
Found at i:15721852 original size:120 final size:120
Alignment explanation
Indices: 15721639--15721883 Score: 490
Period size: 120 Copynumber: 2.0 Consensus size: 120
15721629 TATTGAAAAC
15721639 ATTGCTATAATCCTGGTAATGGTGCTAAAAACTTGATTGCTGTTTTTTGTATAACATGTAAGTGC
1 ATTGCTATAATCCTGGTAATGGTGCTAAAAACTTGATTGCTGTTTTTTGTATAACATGTAAGTGC
15721704 ACAGATTAAGTAATAAAATGAAAGTATTCTAGTATTGTCTCTCAAAGGATTATAG
66 ACAGATTAAGTAATAAAATGAAAGTATTCTAGTATTGTCTCTCAAAGGATTATAG
15721759 ATTGCTATAATCCTGGTAATGGTGCTAAAAACTTGATTGCTGTTTTTTGTATAACATGTAAGTGC
1 ATTGCTATAATCCTGGTAATGGTGCTAAAAACTTGATTGCTGTTTTTTGTATAACATGTAAGTGC
15721824 ACAGATTAAGTAATAAAATGAAAGTATTCTAGTATTGTCTCTCAAAGGATTATAG
66 ACAGATTAAGTAATAAAATGAAAGTATTCTAGTATTGTCTCTCAAAGGATTATAG
15721879 ATTGC
1 ATTGC
15721884 AATTGTTGGG
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 125 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (120 bp):
ATTGCTATAATCCTGGTAATGGTGCTAAAAACTTGATTGCTGTTTTTTGTATAACATGTAAGTGC
ACAGATTAAGTAATAAAATGAAAGTATTCTAGTATTGTCTCTCAAAGGATTATAG
Found at i:15723634 original size:22 final size:22
Alignment explanation
Indices: 15723503--15723730 Score: 86
Period size: 22 Copynumber: 10.0 Consensus size: 22
15723493 TAGCTTGGAA
* *
15723503 GACTTTGAAATTTTACCTAGAG
1 GACTTTGAAATTATGCCTAGAG
* *
15723525 GATTTTGAAATTATGCTTAGAG
1 GACTTTGAAATTATGCCTAGAG
* * *
15723547 AACTTTGTAATTATGCGC-AAAG
1 GACTTTGAAATTATGC-CTAGAG
* * *
15723569 GACTTTGAGATTATGCC-CGAAA
1 GACTTTGAAATTATGCCTAG-AG
** * **
15723591 GTTTTTGTAATTAT-ATTGAGAG
1 GACTTTGAAATTATGCCT-AGAG
15723613 GACTTTGAAATTATGCCTAGAG
1 GACTTTGAAATTATGCCTAGAG
* *
15723635 GTTTTAAAGTTTTGAAATTATGCCCAGAG
1 G------A-CTTTGAAATTATGCCTAGAG
* * * * * *
15723664 AAATTTGAAATTGTGTCTAAAA
1 GACTTTGAAATTATGCCTAGAG
* *
15723686 GTCTTTGAAATTCTG-CTCAGAG
1 GACTTTGAAATTATGCCT-AGAG
* *
15723708 GCCTTTGAAATTGTGCCTAGAG
1 GACTTTGAAATTATGCCTAGAG
15723730 G
1 G
15723731 TTTTCAAGTT
Statistics
Matches: 147, Mismatches: 45, Indels: 28
0.67 0.20 0.13
Matches are distributed among these distances:
21 3 0.02
22 120 0.82
23 5 0.03
28 1 0.01
29 18 0.12
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.36
Consensus pattern (22 bp):
GACTTTGAAATTATGCCTAGAG
Found at i:15723639 original size:44 final size:44
Alignment explanation
Indices: 15723521--15723734 Score: 108
Period size: 44 Copynumber: 4.7 Consensus size: 44
15723511 AATTTTACCT
* * ***
15723521 AGAGGATTTTGAAATTATGCTTAGAGAACTTTGTAATTATGCGC
1 AGAGGACTTTGAAATTATGCCTAGAGGTTTTTGTAATTATGCGC
* * * * **
15723565 AAAGGACTTTGAGATTATGCC-CGAAAGTTTTTGTAATTATATTG-
1 AGAGGACTTTGAAATTATGCCTAG-AGGTTTTTGTAATTAT-GCGC
* *
15723609 AGAGGACTTTGAAATTATGCCTAGAGGTTTTAAAGTTTTGAAATTATGCCC
1 AGAGGACTTTGAAATTATGCCTAGAGG---T----TTTTGTAATTATGCGC
* * * * * * * * * *
15723660 AGAGAAATTTGAAATTGTGTCTAAAAGTCTTTGAAATTCTGCTC
1 AGAGGACTTTGAAATTATGCCTAGAGGTTTTTGTAATTATGCGC
* *
15723704 AGAGGCCTTTGAAATTGTGCCTAGAGGTTTT
1 AGAGGACTTTGAAATTATGCCTAGAGGTTTT
15723735 CAAGTTTTGT
Statistics
Matches: 124, Mismatches: 35, Indels: 22
0.69 0.19 0.12
Matches are distributed among these distances:
43 1 0.01
44 87 0.70
45 2 0.02
47 1 0.01
48 1 0.01
51 32 0.26
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (44 bp):
AGAGGACTTTGAAATTATGCCTAGAGGTTTTTGTAATTATGCGC
Found at i:15723887 original size:40 final size:40
Alignment explanation
Indices: 15723798--15723931 Score: 103
Period size: 40 Copynumber: 3.4 Consensus size: 40
15723788 AGGCTTTGGG
* * *** *
15723798 AATCATTCAAAAATCTAAAGTTTTGCCCAGAGGTC-TTGTA
1 AATCATTCAAAAATTTAAAATTTCAACCAAAGGTCTTTG-A
** **
15723838 AATTTTTCAAAAATTTAAGGTTTC-ACCTAAAGG-CTTTAGA
1 AATCATTCAAAAATTTAAAATTTCAACC-AAAGGTCTTT-GA
*
15723878 AATCATTCAAAATTTTAAAATTTCAACCAAAGGTCTTTGA
1 AATCATTCAAAAATTTAAAATTTCAACCAAAGGTCTTTGA
**
15723918 AATTTTTCAAAAAT
1 AATCATTCAAAAAT
15723932 CTAGAGCTTT
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
39 3 0.04
40 63 0.85
41 8 0.11
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (40 bp):
AATCATTCAAAAATTTAAAATTTCAACCAAAGGTCTTTGA
Found at i:15724118 original size:41 final size:41
Alignment explanation
Indices: 15724061--15724190 Score: 124
Period size: 40 Copynumber: 3.2 Consensus size: 41
15724051 TGCTTGGAGA
** * *
15724061 TCTTAAAATTGATTCAAAAATTTAAAAATTTTACC-CGAAGG
1 TCTTAAAATTCTTTCAAAAATTTAAAAATTCTACCAAG-AGG
* **
15724102 TTTTGGAATTCTTTCAAAAATTT-AAAATTCTACCAAGAGG
1 TCTTAAAATTCTTTCAAAAATTTAAAAATTCTACCAAGAGG
* *
15724142 TCTTAAAATTCTTTCGAAAAA-TTAAAAA-TCTACCTAGAAG
1 TCTTAAAATTCTTTC-AAAAATTTAAAAATTCTACCAAGAGG
*
15724182 TCTTGAAAT
1 TCTTAAAAT
15724191 CCTAGTATTC
Statistics
Matches: 73, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
40 45 0.62
41 28 0.38
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (41 bp):
TCTTAAAATTCTTTCAAAAATTTAAAAATTCTACCAAGAGG
Found at i:15724132 original size:19 final size:19
Alignment explanation
Indices: 15724108--15724170 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 19
15724098 AAGGTTTTGG
15724108 AATTCTTTCAAAAATTTAA
1 AATTCTTTCAAAAATTTAA
** **
15724127 AATTCTACCAAGAGGTCTTAA
1 AATTCTTTCAA-AAAT-TTAA
*
15724148 AATTCTTTCGAAAAATTAAA
1 AATTCTTTC-AAAAATTTAA
15724168 AAT
1 AAT
15724171 CTACCTAGAA
Statistics
Matches: 32, Mismatches: 9, Indels: 5
0.70 0.20 0.11
Matches are distributed among these distances:
19 9 0.28
20 8 0.25
21 13 0.41
22 2 0.06
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (19 bp):
AATTCTTTCAAAAATTTAA
Found at i:15724581 original size:20 final size:20
Alignment explanation
Indices: 15724556--15724594 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
15724546 TATGTGTTAA
15724556 TAATGCAAATGCTTTTTTCC
1 TAATGCAAATGCTTTTTTCC
15724576 TAATGCAAATGCTTTTTTC
1 TAATGCAAATGCTTTTTTC
15724595 TTTTCCTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.18, G:0.10, T:0.46
Consensus pattern (20 bp):
TAATGCAAATGCTTTTTTCC
Found at i:15726585 original size:17 final size:17
Alignment explanation
Indices: 15726560--15726600 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
15726550 TTTCATTTAT
15726560 TTTC-CTTTTT-CATTC
1 TTTCACTTTTTCCATTC
*
15726575 TTTCACTTTTTCCTTTC
1 TTTCACTTTTTCCATTC
*
15726592 TTTCTCTTT
1 TTTCACTTT
15726601 GAATAGATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTCACTTTTTCCATTC
Found at i:15727084 original size:14 final size:14
Alignment explanation
Indices: 15727057--15727136 Score: 56
Period size: 14 Copynumber: 5.7 Consensus size: 14
15727047 AAAAATATTT
* *
15727057 TTTTCATTTCTTTC
1 TTTTCCTTTTTTTC
*
15727071 TTTTCCTTGTTTTC
1 TTTTCCTTTTTTTC
* *
15727085 ATTTCATTTTTTTTC
1 TTTTC-CTTTTTTTC
* *
15727100 TCTTTTC-TTTTTTG
1 T-TTTCCTTTTTTTC
*
15727114 TTTTCATTTTTTTC
1 TTTTCCTTTTTTTC
15727128 -TTTCCTTTT
1 TTTTCCTTTT
15727137 CTTTACATGC
Statistics
Matches: 49, Mismatches: 14, Indels: 7
0.70 0.20 0.10
Matches are distributed among these distances:
13 11 0.22
14 28 0.57
15 7 0.14
16 3 0.06
ACGTcount: A:0.05, C:0.17, G:0.03, T:0.75
Consensus pattern (14 bp):
TTTTCCTTTTTTTC
Found at i:15727112 original size:29 final size:30
Alignment explanation
Indices: 15727063--15727140 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 30
15727053 ATTTTTTTCA
*
15727063 TTTCTTTCTTTTCCTTGTTTTCATTTCATTTT
1 TTTCTCTCTTTT-CTT-TTTTCATTTCATTTT
**
15727095 TTT-TCTCTTTTCTTTTTTGTTTTCATTTT
1 TTTCTCTCTTTTCTTTTTTCATTTCATTTT
*
15727124 TTTCTTTCCTTTTCTTT
1 TTTCTCT-CTTTTCTTT
15727141 ACATGCCCTC
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 16 0.40
30 5 0.12
31 16 0.40
32 3 0.08
ACGTcount: A:0.04, C:0.18, G:0.03, T:0.76
Consensus pattern (30 bp):
TTTCTCTCTTTTCTTTTTTCATTTCATTTT
Found at i:15727126 original size:31 final size:34
Alignment explanation
Indices: 15727067--15727140 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 34
15727057 TTTTCATTTC
15727067 TTTCTTTTCCTTGTTTTCATTTCATTTTT-TTTCTCT
1 TTTCTTTT-CTTGTTTTCATTT-ATTTTTCTTTC-CT
15727103 TTTCTTTT-TTGTTTTCA-TT-TTTTTCTTTCCT
1 TTTCTTTTCTTGTTTTCATTTATTTTTCTTTCCT
15727134 TTTCTTT
1 TTTCTTT
15727141 ACATGCCCTC
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
31 14 0.38
32 4 0.11
33 2 0.05
34 9 0.24
36 8 0.22
ACGTcount: A:0.04, C:0.18, G:0.03, T:0.76
Consensus pattern (34 bp):
TTTCTTTTCTTGTTTTCATTTATTTTTCTTTCCT
Found at i:15730668 original size:14 final size:14
Alignment explanation
Indices: 15730618--15730658 Score: 82
Period size: 14 Copynumber: 2.9 Consensus size: 14
15730608 ATCTATTAAG
15730618 ATATGCATGAAATA
1 ATATGCATGAAATA
15730632 ATATGCATGAAATA
1 ATATGCATGAAATA
15730646 ATATGCATGAAAT
1 ATATGCATGAAAT
15730659 GAAGTGCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.29
Consensus pattern (14 bp):
ATATGCATGAAATA
Found at i:15730690 original size:37 final size:36
Alignment explanation
Indices: 15730649--15730777 Score: 125
Period size: 37 Copynumber: 3.5 Consensus size: 36
15730639 TGAAATAATA
*
15730649 TGCATGAAATGAAGTGCATGTACTATTTATTAAGTTG
1 TGCATGAAATGAAGTGCATGTACTATCTATTAA-TTG
* * * *
15730686 TGCATGAAATGGAGTGTATGTACTACCTATTAAAATG
1 TGCATGAAATGAAGTGCATGTACTATCTATT-AATTG
* * *
15730723 TGTATGAAATAGAA-TGCATGCATTATCTATTAATATG
1 TGCATGAAAT-GAAGTGCATGTACTATCTATTAAT-TG
* *
15730760 TACATGAAATGGAGTGCA
1 TGCATGAAATGAAGTGCA
15730778 CATATTATTT
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
36 4 0.05
37 65 0.89
38 4 0.05
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (36 bp):
TGCATGAAATGAAGTGCATGTACTATCTATTAATTG
Found at i:15733823 original size:18 final size:17
Alignment explanation
Indices: 15733793--15733826 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15733783 ATAAAATATT
*
15733793 AAAAAATATATAAAAAG
1 AAAAAATAAATAAAAAG
15733810 AAAAAATAAAATAAAAA
1 AAAAAAT-AAATAAAAA
15733827 TAGTAAGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAAATAAATAAAAAG
Found at i:15734396 original size:20 final size:20
Alignment explanation
Indices: 15734342--15734403 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
15734332 ATAAATTTAT
*
15734342 AAAACC-CTAAGTGAAACCC
1 AAAACCTCTAAGTGAAACCA
* *
15734361 TAAACCT-TAGGTGAAACCA
1 AAAACCTCTAAGTGAAACCA
*
15734380 AAAAGCTCTAAGTGAAAGCCA
1 AAAACCTCTAAGTGAAA-CCA
15734401 AAA
1 AAA
15734404 CCCTAAAACG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 20 0.59
20 8 0.24
21 6 0.18
ACGTcount: A:0.48, C:0.23, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAACCTCTAAGTGAAACCA
Found at i:15736796 original size:18 final size:17
Alignment explanation
Indices: 15736773--15737128 Score: 70
Period size: 19 Copynumber: 20.5 Consensus size: 17
15736763 AGGGTCTAAG
15736773 TTAGGGTTTAAGGTTAGT
1 TTAGGGTTT-AGGTTAGT
15736791 TTAGGGTTTAGGATTAGT
1 TTAGGGTTTAGG-TTAGT
* * * *
15736809 TTGGGGTCTAGGCTGGACT
1 TTAGGGTTTAGG-T-TAGT
15736828 TTAGGGTTT--G---GT
1 TTAGGGTTTAGGTTAGT
*
15736840 TTAGGGGTTAAGGTTAGT
1 TTA-GGGTTTAGGTTAGT
* *
15736858 TTAGGGTTTATGTTGGGCT
1 TTAGGGTTTAGGTT-AG-T
*
15736877 CTAGGGTTT--G---GT
1 TTAGGGTTTAGGTTAGT
15736889 TTAGAGG-TTATGGTTAGT
1 TTAG-GGTTTA-GGTTAGT
* *
15736907 TTAGGGTTTTGGTTGGCCT
1 TTAGGGTTTAGGTTAG--T
*
15736926 TTAAGGGTTT--G---CT
1 TT-AGGGTTTAGGTTAGT
* *
15736939 TTAGGGTTTAGCTTTTGGT
1 TTAGGGTTTAG--GTTAGT
* *
15736958 TTAGGGTTTAGCTTTTGGT
1 TTAGGGTTTAG--GTTAGT
15736977 TTAGGGTTTAGGGTTAAGT
1 TTAGGGTTTA-GGTT-AGT
*
15736996 TTAAGGTTTA-G---G-
1 TTAGGGTTTAGGTTAGT
*
15737008 TTAGGGTTTAGGACTTGGT
1 TTAGGGTTTAGG--TTAGT
* * *
15737027 TTAGGTTTTAAAGTTTGAT
1 TTAGGGTTT-AGGTTAG-T
15737046 TTAGGGTTTAGGGTTTAGT
1 TTAGGGTTTA-GG-TTAGT
* *
15737065 TTAGGATCTAGAGTTAGT
1 TTAGGGTTTAG-GTTAGT
* *
15737083 TTAGAGTCTAGAGTTAGT
1 TTAGGGTTTAG-GTTAGT
* * *
15737101 TTAGAGTCTAGCTTAGTGT
1 TTAGGGTTTAGGTTA--GT
15737120 TTAGGGTTT
1 TTAGGGTTT
15737129 GATTTAGGAT
Statistics
Matches: 258, Mismatches: 36, Indels: 87
0.68 0.09 0.23
Matches are distributed among these distances:
12 26 0.10
13 13 0.05
15 2 0.01
17 25 0.10
18 80 0.31
19 99 0.38
20 13 0.05
ACGTcount: A:0.17, C:0.04, G:0.34, T:0.45
Consensus pattern (17 bp):
TTAGGGTTTAGGTTAGT
Found at i:15736857 original size:49 final size:49
Alignment explanation
Indices: 15736789--15736944 Score: 179
Period size: 49 Copynumber: 3.2 Consensus size: 49
15736779 TTTAAGGTTA
* * * *
15736789 GTTTA-GGGTTTAGGATTAGTTTGGGGTCTAGGCTGGACTTTAGGGTTTG
1 GTTTAGGGGTTAAGG-TTAGTTTAGGGTTTAGGTTGGACTTTAGGGTTTG
* * *
15736838 GTTTAGGGGTTAAGGTTAGTTTAGGGTTTATGTTGGGCTCTAGGGTTTG
1 GTTTAGGGGTTAAGGTTAGTTTAGGGTTTAGGTTGGACTTTAGGGTTTG
* * * *
15736887 GTTTAGAGGTTATGGTTAGTTTAGGGTTTTGGTTGGCCTTTAAGGGTTTG
1 GTTTAGGGGTTAAGGTTAGTTTAGGGTTTAGGTTGGACTTT-AGGGTTTG
*
15736937 CTTTAGGG
1 GTTTAGGG
15736945 TTTAGCTTTT
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
49 68 0.76
50 22 0.24
ACGTcount: A:0.14, C:0.05, G:0.38, T:0.43
Consensus pattern (49 bp):
GTTTAGGGGTTAAGGTTAGTTTAGGGTTTAGGTTGGACTTTAGGGTTTG
Found at i:15736919 original size:17 final size:18
Alignment explanation
Indices: 15736887--15736920 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15736877 CTAGGGTTTG
15736887 GTTTAGAGGTTATGGTTA
1 GTTTAGAGGTTATGGTTA
*
15736905 GTTTAG-GGTTTTGGTT
1 GTTTAGAGGTTATGGTT
15736921 GGCCTTTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (18 bp):
GTTTAGAGGTTATGGTTA
Found at i:15736955 original size:19 final size:19
Alignment explanation
Indices: 15736933--15736987 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
15736923 CCTTTAAGGG
*
15736933 TTTGCTTTAGGGTTTAGCT
1 TTTGGTTTAGGGTTTAGCT
15736952 TTTGGTTTAGGGTTTAGCT
1 TTTGGTTTAGGGTTTAGCT
15736971 TTTGGTTTAGGGTTTAG
1 TTTGGTTTAGGGTTTAG
15736988 GGTTAAGTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.11, C:0.05, G:0.31, T:0.53
Consensus pattern (19 bp):
TTTGGTTTAGGGTTTAGCT
Found at i:15736965 original size:7 final size:7
Alignment explanation
Indices: 15736938--15737063 Score: 60
Period size: 7 Copynumber: 19.7 Consensus size: 7
15736928 AAGGGTTTGC
15736938 TTTAGGG
1 TTTAGGG
*
15736945 TTTA-GC
1 TTTAGGG
*
15736951 TTT-TGG
1 TTTAGGG
15736957 TTTAGGG
1 TTTAGGG
*
15736964 TTTA-GC
1 TTTAGGG
*
15736970 TTT-TGG
1 TTTAGGG
15736976 TTTAGGG
1 TTTAGGG
15736983 TTTAGGG
1 TTTAGGG
*
15736990 -TTA-AG
1 TTTAGGG
*
15736995 TTTAAGG
1 TTTAGGG
15737002 TTTA-GG
1 TTTAGGG
15737008 -TTAGGG
1 TTTAGGG
*
15737014 TTTAGGA
1 TTTAGGG
*
15737021 CTT--GG
1 TTTAGGG
*
15737026 TTTAGGT
1 TTTAGGG
**
15737033 TTTAAAG
1 TTTAGGG
*
15737040 TTT--GA
1 TTTAGGG
15737045 TTTAGGG
1 TTTAGGG
15737052 TTTAGGG
1 TTTAGGG
15737059 TTTAG
1 TTTAG
15737064 TTTAGGATCT
Statistics
Matches: 88, Mismatches: 19, Indels: 24
0.67 0.15 0.18
Matches are distributed among these distances:
5 10 0.11
6 26 0.30
7 52 0.59
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (7 bp):
TTTAGGG
Found at i:15737012 original size:69 final size:69
Alignment explanation
Indices: 15736939--15737067 Score: 177
Period size: 69 Copynumber: 1.9 Consensus size: 69
15736929 AGGGTTTGCT
** *** *
15736939 TTAGGGTTTAGCTTTTGGTTTAGGGTTTAGCTTTTGGTTTAGGGTTTAGGGTTAAGTTTAAGGTT
1 TTAGGGTTTAGCACTTGGTTTAGGGTTTAAAGTTTGATTTAGGGTTTAGGGTTAAGTTTAAGGTT
15737004 TAGG
66 TAGG
* * *
15737008 TTAGGGTTTAGGACTTGGTTTAGGTTTTAAAGTTTGATTTAGGGTTTAGGGTTTAGTTTA
1 TTAGGGTTTAGCACTTGGTTTAGGGTTTAAAGTTTGATTTAGGGTTTAGGGTTAAGTTTA
15737068 GGATCTAGAG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 51 1.00
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (69 bp):
TTAGGGTTTAGCACTTGGTTTAGGGTTTAAAGTTTGATTTAGGGTTTAGGGTTAAGTTTAAGGTT
TAGG
Found at i:15737016 original size:12 final size:12
Alignment explanation
Indices: 15736958--15737019 Score: 52
Period size: 12 Copynumber: 5.0 Consensus size: 12
15736948 AGCTTTTGGT
*
15736958 TTAGGGTTTAGC
1 TTAGGGTTTAGG
**
15736970 TTTTGGTTTAGGG
1 TTAGGGTTTA-GG
* *
15736983 TTTAGGGTTAAGT
1 -TTAGGGTTTAGG
*
15736996 TTAAGGTTTAGG
1 TTAGGGTTTAGG
15737008 TTAGGGTTTAGG
1 TTAGGGTTTAGG
15737020 ACTTGGTTTA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
12 28 0.76
13 2 0.05
14 7 0.19
ACGTcount: A:0.18, C:0.02, G:0.35, T:0.45
Consensus pattern (12 bp):
TTAGGGTTTAGG
Found at i:15737016 original size:38 final size:38
Alignment explanation
Indices: 15736938--15737069 Score: 117
Period size: 38 Copynumber: 3.5 Consensus size: 38
15736928 AAGGGTTTGC
* * * **
15736938 TTTAGGGTTTAGCTTTTGGTTTAGGGTTTAGCTTTTGG
1 TTTAGGGTTTAGGTTTAGGTTTAAGGTTTAGCTTAGGG
* * *
15736976 TTTAGGGTTTAGGGTTAAGTTTAAGGTTTAGGTTAGGG
1 TTTAGGGTTTAGGTTTAGGTTTAAGGTTTAGCTTAGGG
** * *
15737014 TTTAGGACTT-GGTTTAGGTTTTAAAGTTT-GATTTAGGG
1 TTTAGGGTTTAGGTTTAGG-TTTAAGGTTTAG-CTTAGGG
15737052 TTTAGGGTTTA-GTTTAGG
1 TTTAGGGTTTAGGTTTAGG
15737070 ATCTAGAGTT
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
37 7 0.09
38 68 0.91
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (38 bp):
TTTAGGGTTTAGGTTTAGGTTTAAGGTTTAGCTTAGGG
Found at i:15737253 original size:36 final size:36
Alignment explanation
Indices: 15737211--15737289 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
15737201 AGGGCTTGGA
* ** *
15737211 AGGGTTTAG-GGTGGTTTGTGGTTTGGTGGGTGGTTT
1 AGGGTTTAGAGG-GGTTTATGGTTTCATCGGTGGTTT
*
15737247 ATGGTTTAGAGGGGTTTATGGTTTCATCGGTGGTTT
1 AGGGTTTAGAGGGGTTTATGGTTTCATCGGTGGTTT
15737283 AGGGTTT
1 AGGGTTT
15737290 CATAAGTATA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
36 34 0.94
37 2 0.06
ACGTcount: A:0.10, C:0.03, G:0.43, T:0.44
Consensus pattern (36 bp):
AGGGTTTAGAGGGGTTTATGGTTTCATCGGTGGTTT
Found at i:15737283 original size:19 final size:19
Alignment explanation
Indices: 15737220--15737293 Score: 71
Period size: 19 Copynumber: 4.0 Consensus size: 19
15737210 AAGGGTTTAG
* ** *
15737220 GGTGGTTTGTGGTTTGGTG
1 GGTGGTTTATGGTTTCATA
*
15737239 GGTGGTTTATGGTTT-AGA
1 GGTGGTTTATGGTTTCATA
*
15737257 GG-GGTTTATGGTTTCATC
1 GGTGGTTTATGGTTTCATA
*
15737275 GGTGGTTTAGGGTTTCATA
1 GGTGGTTTATGGTTTCATA
15737294 AGTATACATG
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
17 12 0.27
18 5 0.11
19 28 0.62
ACGTcount: A:0.11, C:0.04, G:0.41, T:0.45
Consensus pattern (19 bp):
GGTGGTTTATGGTTTCATA
Found at i:15738984 original size:139 final size:141
Alignment explanation
Indices: 15738743--15739001 Score: 328
Period size: 139 Copynumber: 1.8 Consensus size: 141
15738733 GCGATCAAAA
* * * * * *
15738743 TTTTTAATGCACCAAAAATCATAAAATAATATTAAATCATGATTTAAAGCTTTTTCACAAAAATC
1 TTTTTAATGCACAAAAAATCACAAAATAATATAAAATCATGATTGAAA-CATTTGCACAAAAATC
* *
15738808 CAACTTCGAAAAAGTCAAATTACGAAAATAATTTTAAAAGG-CATTTTAGTAATTTCATATCTTA
65 CAACTTCGAAAAAGTCAAATTACAAAAATAATCTT-AAAGGACATTTTAGTAATTTCATATCTTA
15738872 AGGCATGACAAGG
129 AGGCATGACAAGG
* *
15738885 TTTTTAATGCACAAAAAAT-ACCAAATATTATAAAATCATGATCTGAAA-ATTTGCACAAAAATC
1 TTTTTAATGCACAAAAAATCACAAAATAATATAAAATCATGAT-TGAAACATTTGCACAAAAATC
* * * * *
15738948 TAACTTTG-AGAAGTCAAATTACAAAAATACTCTTAAAGGATATTTTAGTAATTT
65 CAACTTCGAAAAAGTCAAATTACAAAAATAATCTTAAAGGACATTTTAGTAATTT
15739002 TGTCTTTTTG
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
138 5 0.05
139 35 0.35
140 19 0.19
141 19 0.19
142 22 0.22
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (141 bp):
TTTTTAATGCACAAAAAATCACAAAATAATATAAAATCATGATTGAAACATTTGCACAAAAATCC
AACTTCGAAAAAGTCAAATTACAAAAATAATCTTAAAGGACATTTTAGTAATTTCATATCTTAAG
GCATGACAAGG
Found at i:15739497 original size:21 final size:21
Alignment explanation
Indices: 15739473--15739531 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
15739463 ACTCTAAAAT
*
15739473 GAAATTGTAAAAAAAAGACAA
1 GAAATTGAAAAAAAAAGACAA
* * *
15739494 GAAATTCAAAAAGAAAGATAA
1 GAAATTGAAAAAAAAAGACAA
*
15739515 AAAACTTGAAAAAAAAA
1 GAAA-TTGAAAAAAAAA
15739532 ATTGAGAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 20 0.67
22 10 0.33
ACGTcount: A:0.69, C:0.05, G:0.12, T:0.14
Consensus pattern (21 bp):
GAAATTGAAAAAAAAAGACAA
Found at i:15743943 original size:16 final size:16
Alignment explanation
Indices: 15743900--15743946 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
15743890 TTATTATAAC
*
15743900 AATTTAATATGTACTT
1 AATTTAATATGTAATT
15743916 AAGTTT--TATGTAATT
1 AA-TTTAATATGTAATT
15743931 AATTTAATATGTAATT
1 AATTTAATATGTAATT
15743947 TAATATGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 3 0.11
15 10 0.37
16 11 0.41
17 3 0.11
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (16 bp):
AATTTAATATGTAATT
Found at i:15744300 original size:20 final size:18
Alignment explanation
Indices: 15744282--15744336 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
15744272 GATATATTAA
15744282 TAATTTTATATTATGA-T
1 TAATTTTATATTATGATT
15744299 TAATTTTATATTATGA-T
1 TAATTTTATATTATGATT
*
15744316 AAATTTTA-ATTAAT-ATT
1 TAATTTTATATT-ATGATT
15744333 TAAT
1 TAAT
15744337 AGGGGCATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 4 0.12
17 30 0.88
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
TAATTTTATATTATGATT
Found at i:15744302 original size:17 final size:17
Alignment explanation
Indices: 15744282--15744327 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
15744272 GATATATTAA
15744282 TAATTTTATATTATGAT
1 TAATTTTATATTATGAT
15744299 TAATTTTATATTATGAT
1 TAATTTTATATTATGAT
*
15744316 AAATTTTA-ATTA
1 TAATTTTATATTA
15744328 ATATTTAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 4 0.14
17 24 0.86
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
TAATTTTATATTATGAT
Found at i:15744302 original size:130 final size:129
Alignment explanation
Indices: 15743921--15744390 Score: 407
Period size: 130 Copynumber: 3.6 Consensus size: 129
15743911 TACTTAAGTT
* * * * * *
15743921 TTATGTAATTAATTTAATATGTAATTTAATATGGGTATTATAGTAATTTT--CATAAATTACCAC
1 TTATGTAA-AAATTTAATATGTAATTTAATAAGGGTATTATAGTAATTTTAAAACAAAATGCCAC
* * *** * * * * *
15743984 ATGTCAAATTGTC-ATGAAGTGATTCTAAGGGTATTTTAGTAATTTAATGTGTAGTTAATTTTAT
65 ATGTCAAATT-TCTATAAAGTAATAGAAAGGATATATTAATAATTTAATCTATAGTTAATTTTAT
15744048 A
129 A
* * * * * *
15744049 TTATGTTAAAATTTAATATGTAATTCAGTAAGGGTATTACAGTAAATTTTAAAACAAAATACCAT
1 TTATGTAAAAATTTAATATGTAATTTAATAAGGGTATTATAGT-AATTTTAAAACAAAATGCCAC
* * * * * * *
15744114 ATATCAAATTTCTATGAATTAGTGGAAAGGGTATTTTAATAATTTAATCTATAGTTAATTTTATA
65 ATGTCAAATTTCTATAAAGTAATAGAAAGGATATATTAATAATTTAATCTATAGTTAATTTTATA
* * * * * **
15744179 TTATGTAAAAATTTCATATGTAATTTAATAAGAGTTTTATAGTAATTTTTAAATAAAATGTTACA
1 TTATGTAAAAATTTAATATGTAATTTAATAAGGGTATTATAGTAATTTTAAAACAAAATGCCACA
* *
15744244 TGTCAAATTTCTATAAAGTAATAGTAATGATATATTAATAATTTTATAT-TAT-GATTAATTTTA
66 TGTCAAATTTCTATAAAGTAATAGAAAGGATATATTAATAA-TTTA-ATCTATAG-TTAATTTTA
15744307 TA
128 TA
* * * * *
15744309 TTATG-ATAAATTTTAAT-T-AATATTTAATAGGGGCATTATAGTAATTTTGAAACAAAATGCCA
1 TTATGTA-AAAATTTAATATGTA-ATTTAATAAGGGTATTATAGTAATTTTAAAACAAAATGCCA
* *
15744371 CATGTCAATTTTTTATAAAG
64 CATGTCAAATTTCTATAAAG
15744391 CGCTTATAAT
Statistics
Matches: 278, Mismatches: 55, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
127 30 0.11
128 14 0.05
129 104 0.37
130 128 0.46
131 2 0.01
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.43
Consensus pattern (129 bp):
TTATGTAAAAATTTAATATGTAATTTAATAAGGGTATTATAGTAATTTTAAAACAAAATGCCACA
TGTCAAATTTCTATAAAGTAATAGAAAGGATATATTAATAATTTAATCTATAGTTAATTTTATA
Found at i:15744451 original size:35 final size:36
Alignment explanation
Indices: 15744412--15744512 Score: 100
Period size: 36 Copynumber: 2.8 Consensus size: 36
15744402 ATATTTTCGT
* *
15744412 AATTATGGTAAGAAGGGTATTATATTAA-TTTA-AC
1 AATTATGGTAAGAAGGATATTATAATAATTTTAGAC
* *
15744446 AAATTATGTTAA-AAGTGATATTATAATAATTTTAGTC
1 -AATTATGGTAAGAAG-GATATTATAATAATTTTAGAC
* * *
15744483 AATTATGGTATGAAGGATATTTTCATAATT
1 AATTATGGTAAGAAGGATATTATAATAATT
15744513 ATTATAAGAG
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
34 3 0.06
35 21 0.39
36 26 0.48
37 4 0.07
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.42
Consensus pattern (36 bp):
AATTATGGTAAGAAGGATATTATAATAATTTTAGAC
Found at i:15744502 original size:36 final size:35
Alignment explanation
Indices: 15744394--15744512 Score: 91
Period size: 36 Copynumber: 3.3 Consensus size: 35
15744384 TATAAAGCGC
* *
15744394 TTATAATGATATTTTCGT-AATTATGGTAAGAAGGGTA
1 TTATAAT-A-ATTTTAGTCAATTATGGT-AGAAGGATA
* * * *
15744431 TTATATTAA-TTTA-ACAAATTATGTTAAAAGTGATA
1 TTATAATAATTTTAGTC-AATTATGGTAGAAG-GATA
15744466 TTATAATAATTTTAGTCAATTATGGTATGAAGGATA
1 TTATAATAATTTTAGTCAATTATGGTA-GAAGGATA
* *
15744502 TTTTCATAATT
1 TTATAATAATT
15744513 ATTATAAGAG
Statistics
Matches: 64, Mismatches: 12, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
34 7 0.11
35 20 0.31
36 27 0.42
37 10 0.16
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.44
Consensus pattern (35 bp):
TTATAATAATTTTAGTCAATTATGGTAGAAGGATA
Found at i:15748254 original size:17 final size:18
Alignment explanation
Indices: 15748232--15748268 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
15748222 ATATCAAAAC
15748232 AAAATAAA-TTAAAAATT
1 AAAATAAATTTAAAAATT
*
15748249 AAAATAAATTTCAAAATT
1 AAAATAAATTTAAAAATT
15748267 AA
1 AA
15748269 TTCAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAATAAATTTAAAAATT
Found at i:15750004 original size:27 final size:26
Alignment explanation
Indices: 15749972--15750025 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
15749962 ACTTATAAAA
*
15749972 AATTAAAATATA-TATTTTGAATTTTTT
1 AATTAAAAAATATTATTTT--ATTTTTT
15749999 AATTAAAAAATATTATTTTATTTTTT
1 AATTAAAAAATATTATTTTATTTTTT
15750025 A
1 A
15750026 TTTTTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 8 0.32
27 11 0.44
28 6 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (26 bp):
AATTAAAAAATATTATTTTATTTTTT
Found at i:15755433 original size:18 final size:18
Alignment explanation
Indices: 15755375--15755434 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
15755365 ATCATGTGTT
15755375 TTATTTAT-TTTAAAAAA
1 TTATTTATATTTAAAAAA
*
15755392 TATATTTATA-GT--AAAA
1 T-TATTTATATTTAAAAAA
15755408 -TATTTATATTTAAAAAA
1 TTATTTATATTTAAAAAA
15755425 TTATTTATAT
1 TTATTTATAT
15755435 GATAATTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 11
0.73 0.04 0.23
Matches are distributed among these distances:
14 8 0.23
15 1 0.03
16 4 0.11
17 5 0.14
18 17 0.49
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TTATTTATATTTAAAAAA
Found at i:15760903 original size:20 final size:21
Alignment explanation
Indices: 15760861--15760905 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
15760851 ATGTAATTAA
* *
15760861 ATACAATAAATATCATACTAC
1 ATACAATAAACATCATACAAC
*
15760882 ATACAA-AAACATCATTCAAC
1 ATACAATAAACATCATACAAC
15760902 ATAC
1 ATAC
15760906 CAATCAGTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.24
Consensus pattern (21 bp):
ATACAATAAACATCATACAAC
Found at i:15761093 original size:80 final size:80
Alignment explanation
Indices: 15760954--15761189 Score: 314
Period size: 80 Copynumber: 3.0 Consensus size: 80
15760944 ACTCAGAAAC
* *
15760954 ACCATTCAGCATATGATTCAGCCTCCT-AATATCATACAAAACCATTAAGCAAAACAATATCAGA
1 ACCATTCAGCATATGATTCAGCC-CCTCAATATCATACAATACCATTCAGCAAAACAATATCAGA
* *
15761018 CAATATGCTTCAGCAA
65 CAATAAGCTTCAACAA
* * *
15761034 ACCATTCAGCATATGATTCAGCCCCTCAATATTATACAATACCATTC-GATAAAATAATATCAGA
1 ACCATTCAGCATATGATTCAGCCCCTCAATATCATACAATACCATTCAG-CAAAACAATATCAGA
*
15761098 CAATAAGGTTCAACAA
65 CAATAAGCTTCAACAA
** * *
15761114 ACCATTCAAAATATGATTCAGCCCCCCAATATCATACAATATCATTCAGCAAAACAATATCAGAC
1 ACCATTCAGCATATGATTCAGCCCCTCAATATCATACAATACCATTCAGCAAAACAATATCAGAC
* *
15761179 AACAAGGTTCA
66 AATAAGCTTCA
15761190 GTAAACTACA
Statistics
Matches: 137, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 4 0.03
80 132 0.96
81 1 0.01
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.24
Consensus pattern (80 bp):
ACCATTCAGCATATGATTCAGCCCCTCAATATCATACAATACCATTCAGCAAAACAATATCAGAC
AATAAGCTTCAACAA
Found at i:15762408 original size:62 final size:61
Alignment explanation
Indices: 15762338--15762454 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 61
15762328 GTTATTATCA
*
15762338 AGAAACACCTTCAAT-ATTTATATAGATAATTTAAAAG-AAATTATTGAAGGTGTTTGTCGGT
1 AGAAACACCTTCAATAATTT-TA-AAATAATTTAAAAGAAAATTATTGAAGGTGTTTGTCGGT
* **
15762399 AGAAGACACCTTTAATAATTTTAAAATTTTTTAAAAGAAAATTATTGAAGGTGTTT
1 AGAA-ACACCTTCAATAATTTTAAAATAATTTAAAAGAAAATTATTGAAGGTGTTT
15762455 TTCTATAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
61 15 0.31
62 30 0.61
63 4 0.08
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.38
Consensus pattern (61 bp):
AGAAACACCTTCAATAATTTTAAAATAATTTAAAAGAAAATTATTGAAGGTGTTTGTCGGT
Found at i:15770753 original size:33 final size:33
Alignment explanation
Indices: 15770711--15770773 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
15770701 TTTTAGATAC
15770711 AAAGTAGCGACGTTTTCAATTACAAACGTCTCT
1 AAAGTAGCGACGTTTTCAATTACAAACGTCTCT
15770744 AAAGTAGCGACGTTTTCAATTACAAACGTC
1 AAAGTAGCGACGTTTTCAATTACAAACGTC
15770774 ACCAAAGCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (33 bp):
AAAGTAGCGACGTTTTCAATTACAAACGTCTCT
Found at i:15771019 original size:16 final size:16
Alignment explanation
Indices: 15770996--15771035 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
15770986 TGCCGCTAAA
15770996 CATTAAAAAAAAATG-
1 CATTAAAAAAAAATGC
15771011 CACTT-AAAAAAAATGC
1 CA-TTAAAAAAAAATGC
15771027 CATTAAAAA
1 CATTAAAAA
15771036 CCTAAACTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 14 0.64
16 8 0.36
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.20
Consensus pattern (16 bp):
CATTAAAAAAAAATGC
Found at i:15771589 original size:32 final size:30
Alignment explanation
Indices: 15771531--15771593 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 30
15771521 TTTCAAAAAC
*
15771531 ATTTAAAAATTTTAAAAAATCCAAAATAAA
1 ATTTAAAAATTTTAAAAAATCAAAAATAAA
*
15771561 ATTTAAAAAATTTCTAAAATATCAAAAATAAA
1 ATTT-AAAAATTT-TAAAAAATCAAAAATAAA
15771593 A
1 A
15771594 AACTAAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 4 0.14
31 8 0.28
32 17 0.59
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.30
Consensus pattern (30 bp):
ATTTAAAAATTTTAAAAAATCAAAAATAAA
Found at i:15771602 original size:32 final size:30
Alignment explanation
Indices: 15771534--15771602 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 30
15771524 CAAAAACATT
* **
15771534 TAAAAATTTTAAAAAATCCAAAATAAAATT
1 TAAAAATTTTAAAAAATCAAAAATAAAAAC
*
15771564 TAAAAAATTTCTAAAATATCAAAAATAAAAAAC
1 T-AAAAATTT-TAAAAAATCAAAAAT-AAAAAC
15771597 TAAAAA
1 TAAAAA
15771603 AATTAGAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 1 0.03
31 8 0.25
32 18 0.56
33 5 0.16
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (30 bp):
TAAAAATTTTAAAAAATCAAAAATAAAAAC
Found at i:15772123 original size:18 final size:18
Alignment explanation
Indices: 15772102--15772150 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
15772092 TATTTTTAAA
15772102 ATTTTTAGAATTTTCTAC
1 ATTTTTAGAATTTTCTAC
*
15772120 ATTTTCTA-CATTTTCTAC
1 ATTTT-TAGAATTTTCTAC
15772138 ATTTTT-GAATTTT
1 ATTTTTAGAATTTT
15772151 TTTGAATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 6 0.22
18 19 0.70
19 2 0.07
ACGTcount: A:0.24, C:0.12, G:0.04, T:0.59
Consensus pattern (18 bp):
ATTTTTAGAATTTTCTAC
Found at i:15781871 original size:28 final size:26
Alignment explanation
Indices: 15781827--15781887 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
15781817 ATAAATTTTA
*
15781827 TAAATAATAATATTAAGTAAATATATTT
1 TAAATAATAATATTAAG--AATATATAT
*
15781855 TAAATTAT-ATATATAAGAATATATAT
1 TAAATAATAATAT-TAAGAATATATAT
15781881 TAAATAA
1 TAAATAA
15781888 AGATATTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 14 0.48
27 4 0.14
28 11 0.38
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (26 bp):
TAAATAATAATATTAAGAATATATAT
Found at i:15782054 original size:72 final size:70
Alignment explanation
Indices: 15781948--15782404 Score: 290
Period size: 73 Copynumber: 6.3 Consensus size: 70
15781938 CATTTTTTTT
* * ** * * *
15781948 TTAAAAACATGATCTTTATTAAAATTCAAAAATTTTGAAAATAAAATTTTAATATTCACTATGTT
1 TTAAAAACA-G-TTTTTGTTAAAATTTTAAAATTTTAAAAATAAAATTTTAACATTCATTATGTT
* *
15782013 TGTTGTC
64 TCTTATC
* *
15782020 TTAAGAAAGCAGTTTTTGTTAAAATTTTAAAATTTTAAAAAATAAAATTTTAACGTTTATTATGT
1 TTAA-AAA-CAGTTTTTGTTAAAATTTTAAAATTTT-AAAAATAAAATTTTAACATTCATTATGT
15782085 TTCTTATC
63 TTCTTATC
*** * * * * *
15782093 TTAAAATTATTTTTTTTGTTAAAATTTCAGAATTCTAAAAATAAAATTTTAACATTCATTGTGCT
1 TTAAAA--ACAGTTTTTGTTAAAATTTTAAAATTTTAAAAATAAAATTTTAACATTCATTATGTT
15782158 TCTTATC
64 TCTTATC
* * * ** ** * *
15782165 TTTACAAACTAATCTTTGTTAAAATTCCAAAAATTTT--GTATAAAGTTTTAACATTTATTATGT
1 -TTAAAAAC-AGTTTTTGTTAAAATT-TTAAAATTTTAAAAATAAAATTTTAACATTCATTATGT
*
15782228 TTTTTATC
63 TTCTTATC
* *** * * * * *
15782236 TTAAAAATACGATTTTCACTAAAATTTTAGAATTTCAAAAATAAAATTTTAATATCCATTACGTT
1 TTAAAAACA-G-TTTTTGTTAAAATTTTAAAATTTTAAAAATAAAATTTTAACATTCATTATG-T
*
15782301 TTTTTATC
63 TTCTTATC
** * * * * * * *
15782309 TTAAAAATGTGATTTTTGTTAAAATATTAAAATTTCAAAAATATAGTTTTAATATTCACTGTGTT
1 TTAAAAA-CAG-TTTTTGTTAAAATTTTAAAATTTTAAAAATAAAATTTTAACATTCATTATGTT
15782374 T-TTAATC
64 TCTT-ATC
*
15782381 TTAAAAACGAAGTATTTGTTAAAA
1 TTAAAAAC--AGTTTTTGTTAAAA
15782405 ATATAAATAA
Statistics
Matches: 297, Mismatches: 71, Indels: 34
0.74 0.18 0.08
Matches are distributed among these distances:
69 1 0.00
70 12 0.04
71 40 0.13
72 113 0.38
73 128 0.43
74 3 0.01
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (70 bp):
TTAAAAACAGTTTTTGTTAAAATTTTAAAATTTTAAAAATAAAATTTTAACATTCATTATGTTTC
TTATC
Found at i:15782341 original size:143 final size:141
Alignment explanation
Indices: 15781985--15782348 Score: 331
Period size: 143 Copynumber: 2.5 Consensus size: 141
15781975 AAAAATTTTG
* * * * *
15781985 AAAATAAAATTTTAATATTCACTA-TGTTTGTTGTCTTAAGAAAGCAGTTTTTGTTAAAATTTTA
1 AAAATAAAATTTTAATATTCATTAGT-TTTCTTATCTTAA-AAAGTAATTTTTGTTAAAA-TTTA
* * *** ***
15782049 AAATTTTAAAAAATAAAATTTTAACGTTTATTATGTTTCTTATCTTAAAATTATTTTTTTTGTTA
63 AAATTTT--AAAATAAAATTTTAACATTTATTATGTTTCTTATCTTAAAAATACGATTTTCACTA
15782114 AAATTTCAGAATTCTA
126 AAATTTCAGAATTCTA
* * * * * *
15782130 AAAATAAAATTTTAACATTCATT-GTGCTTCTTATCTTTACAAACTAATCTTTGTTAAAATTCCA
1 AAAATAAAATTTTAATATTCATTAGT-TTTCTTATC-TTAAAAAGTAATTTTTGTTAAAATT--T
** * *
15782194 AAAATTTT-GTATAAAGTTTTAACATTTATTATGTTTTTTATCTTAAAAATACGATTTTCACTAA
62 AAAATTTTAAAATAAAATTTTAACATTTATTATGTTTCTTATCTTAAAAATACGATTTTCACTAA
*
15782258 AATTTTAGAATT-TCA
127 AATTTCAGAATTCT-A
* * *
15782273 AAAATAAAATTTTAATATCCATTACGTTTTTTTATCTTAAAAATGTGATTTTTGTTAAAATATTA
1 AAAATAAAATTTTAATATTCATTA-GTTTTCTTATCTTAAAAA-GTAATTTTTGTTAAAAT-TTA
*
15782338 AAATTTCAAAA
63 AAATTTTAAAA
15782349 ATATAGTTTT
Statistics
Matches: 173, Mismatches: 36, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
142 1 0.01
143 90 0.52
144 24 0.14
145 47 0.27
146 11 0.06
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.46
Consensus pattern (141 bp):
AAAATAAAATTTTAATATTCATTAGTTTTCTTATCTTAAAAAGTAATTTTTGTTAAAATTTAAAA
TTTTAAAATAAAATTTTAACATTTATTATGTTTCTTATCTTAAAAATACGATTTTCACTAAAATT
TCAGAATTCTA
Found at i:15787799 original size:160 final size:161
Alignment explanation
Indices: 15787464--15788761 Score: 947
Period size: 161 Copynumber: 8.1 Consensus size: 161
15787454 AACATTACAA
** * * * * *
15787464 AAAGTCCTAAACAA-ACATAAATTGTAACTTATTCATATATATCAAATTGTGAAAATCAAATTCA
1 AAAGTCCTAAA-AAGACATAAACGGTAACTTTTTCACACATATC-AATTGTGAAAACCAAGTTCA
* * * * *
15787528 GTCATTCGGACAAGTTTTATATCATGTATTTAAGTTACCTAAACTATTAAAACATAAATATAATT
64 ATCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAA--
* * ** * * *
15787593 GTA-AAATTATATTTTTGCCA-TTAGTGGTAAAAT
127 CTACAAATTACATTTTTGCCATTTAACGGCATAAC
* *
15787626 AAAGTCCTAAAAAGACATAAATGGTATA-TTTTTCACATATATCAATTGTGAAAACCAAGTTCAA
1 AAAGTCCTAAAAAGACATAAACGGTA-ACTTTTTCACACATATCAATTGTGAAAACCAAGTTCAA
* * * * * * *
15787690 TCATTTAGATAAGTTTAATATCATGTA-TTAAGTTATCTAAATTGTCAAAACATAGATATAACTA
65 TCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTA
* * * * *
15787754 TAAATTACATTTTTACCCTTTAATGGCGTAAC
130 CAAATTACATTTTTGCCATTTAACGGCATAAC
* * * * *
15787786 AAAGTCTTAAAAAGACATAAACAGTAACATTTTCACACATATTAGCCTTG-G-AAACCAAGTTCA
1 AAAGTCCTAAAAAGACATAAACGGTAACTTTTTCACACATATCA--ATTGTGAAAACCAAGTTCA
* * * * *
15787849 ATCATTCATG-CAAGTTTAATATCATGTATTAAAGCTATTTAAGCTGTTAAAACA-GAATAGTAA
64 ATCATTCA-GACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAATA-T-A
* * * *
15787912 AC-ACAAATTTGCATTTTGGCCATTTAACGGCACAAA
126 ACTACAAA-TTACATTTTTGCCATTTAACGGCATAAC
* * ** *
15787948 AAAGTGCT-AAATGACATAAACGGTAACTTTTTCACACATATCAATAATGAAAACTAAGTTCAAT
1 AAAGTCCTAAAAAGACATAAACGGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCAAT
* * *
15788012 CATTCAAAAAAGTTTAATATCAAGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTAC
66 CATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTAC
*
15788077 AAATGACATTTTTGCCATTTAACGGCATAAC
131 AAATTACATTTTTGCCATTTAACGGCATAAC
* * * * *
15788108 AAAGTCCTAAAAAGATAT-AACGGTAAATTTTTCTCACATATCAATCGTGGAAACCAAG-----T
1 AAAGTCCTAAAAAGACATAAACGGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCAAT
* * * * * * * *
15788167 --TTCGGACAAGTCTAATATTATGTATTGAAACTATCTAAACTGTTAAAACA-GAATCATAAATA
66 CATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAAT-ATAACTA
** * *
15788229 CAAATTTGTATTTTGGCC-TTCTAACAGCATAA-
130 CAAA-TTACATTTTTGCCATT-TAACGGCATAAC
* * * *** *
15788261 AAAATCCTAAATAGAC--AAACGATAACTTTTTCACACATATCAACCAT-ATAAACTAAGTTCAA
1 AAAGTCCTAAAAAGACATAAACGGTAACTTTTTCACACATATCAATTGTGA-AAACCAAGTTCAA
* * * * * *
15788323 TCATTCAAACAAGTTTAATATTATTTATTGAACCTATCTAAACTATT-AAA-ATGGAATAATAA-
65 TCATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACAT-AAAT-ATAAC
* * * * * * * *
15788385 AAGCAAATTTGCATATTAGCCTTTTAATGGTACAA-
128 TA-CAAA-TTACATTTTTGCCATTTAACGGCATAAC
* * ** * * *
15788420 AAAGTGCTAAATAGACATAAACAATAACTTTTTCATAC--AT-AATCGTGGAAACCAAGTTCAAT
1 AAAGTCCTAAAAAGACATAAACGGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCAAT
* * *
15788482 TATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTTAAAATATAAATATAACTAC
66 CATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTAC
* * * ** *
15788547 AAAATTAAAATTTTGCCCTTTAACAACACAAC
131 -AAATTACATTTTTGCCATTTAACGGCATAAC
* * * * * *
15788579 AAAGTCCTAAAAAGATATAAATGGTAACTTTTTCACACATATCAACTATGGAAACTAAGTTCAAT
1 AAAGTCCTAAAAAGACATAAACGGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCAAT
* * * * * * * * * *
15788644 CATT-TGAGCAAGTTTAATATAATGTATTGATGTTATCCAAACTGTTAAAACA-AAAAATAATTG
66 CATTCAGA-CAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTA
* * * * *
15788707 CATATTTACATTTTTGCCCTTTAATGACACAA-
130 CA-AATTACATTTTTGCCATTTAACGGCATAAC
* * *
15788739 AAAGTGCTAAACAGATATAAACG
1 AAAGTCCTAAAAAGACATAAACG
15788762 ACAACTTTCT
Statistics
Matches: 909, Mismatches: 180, Indels: 96
0.77 0.15 0.08
Matches are distributed among these distances:
152 35 0.04
153 66 0.07
154 19 0.02
155 1 0.00
157 2 0.00
158 84 0.09
159 141 0.16
160 205 0.23
161 225 0.25
162 130 0.14
163 1 0.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (161 bp):
AAAGTCCTAAAAAGACATAAACGGTAACTTTTTCACACATATCAATTGTGAAAACCAAGTTCAAT
CATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTAC
AAATTACATTTTTGCCATTTAACGGCATAAC
Found at i:15788014 original size:161 final size:160
Alignment explanation
Indices: 15787626--15788695 Score: 805
Period size: 160 Copynumber: 6.7 Consensus size: 160
15787616 GTGGTAAAAT
* * * ** *
15787626 AAAGTCCTAAAAAGACATAAATGGTATA-TTTTTCACATATATCAATTGTGAAAACCAAGTTCAA
1 AAAGTCCT-AAATGACATAAACGGTA-ACTTTTTCACACATATCAATCATGGAAACCAAGTTCAA
* * * * * *
15787690 TCATTTAGATAAGTTTAATATCATGTATT-AAGTTATCTAAATTGTCAAAACATAGATAT-AACT
64 TCATTCAG-CAAGTTTAATATCATGTATTAAAGCTATCTAAACTGTTAAAACAGA-ATATAAACT
* * ** * * ** *
15787753 ATAAA-TTACATTTTTACCCTTTAATGGCGTAAC
127 ACAAATTTGCATTTTGGCCATTTAACGGCACAAA
* * * * * ** *
15787786 AAAGTCTTAAAAAGACATAAACAGTAACATTTTCACACATATTAGCCTTGGAAACCAAGTTCAAT
1 AAAGTCCT-AAATGACATAAACGGTAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAAT
* *
15787851 CATTCATGCAAGTTTAATATCATGTATTAAAGCTATTTAAGCTGTTAAAACAGAATAGTAAAC-A
65 CATTCA-GCAAGTTTAATATCATGTATTAAAGCTATCTAAACTGTTAAAACAGAATA-TAAACTA
15787915 CAAATTTGCATTTTGGCCATTTAACGGCACAAA
128 CAAATTTGCATTTTGGCCATTTAACGGCACAAA
* * * *
15787948 AAAGTGCTAAATGACATAAACGGTAACTTTTTCACACATATCAATAATGAAAACTAAGTTCAATC
1 AAAGTCCTAAATGACATAAACGGTAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAATC
** * * * *
15788013 ATTCAAAAAAGTTTAATATCAAGTATTTAAGCTATCTAAACTATTAAAACATAA-ATATAACTAC
66 ATTC-AGCAAGTTTAATATCATGTATTAAAGCTATCTAAACTGTTAAAACAGAATATA-AACTAC
* * *
15788077 AAA--TGACATTTTTGCCATTTAACGGCATAAC
129 AAATTTG-CATTTTGGCCATTTAACGGCACAAA
* * * * *
15788108 AAAGTCCTAAA-AAGATATAACGGTAAATTTTTCTCACATATCAATCGTGGAAACCAAGTT---T
1 AAAGTCCTAAATGACATA-AACGGTAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAAT
** * *
15788169 C--GGA-CAAGTCTAATATTATGTATTGAAA-CTATCTAAACTGTTAAAACAGAATCATAAA-TA
65 CATTCAGCAAGTTTAATATCATGTATT-AAAGCTATCTAAACTGTTAAAACAGAAT-ATAAACTA
* * *
15788229 CAAATTTGTATTTTGGCC-TTCTAACAGCATAAA
128 CAAATTTGCATTTTGGCCATT-TAACGGCACAAA
* * ** *
15788262 AAA-TCCTAAATAGAC--AAACGATAACTTTTTCACACATATCAACCATATAAACTAAGTTCAAT
1 AAAGTCCTAAAT-GACATAAACGGTAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAAT
* * * * * * **
15788324 CATTCAAACAAGTTTAATATTATTTATTGAACCTATCTAAACTATTAAAATGGAATAATAAA--A
65 CATTC-AGCAAGTTTAATATCATGTATTAAAGCTATCTAAACTGTTAAAACAGAAT-ATAAACTA
* * * * *
15788387 GCAAATTTGCATATTAGCCTTTTAATGGTAC-AA
128 -CAAATTTGCATTTTGGCCATTTAACGGCACAAA
* ** * *
15788420 AAAGTGCTAAATAGACATAAACAATAACTTTTTCATAC--AT-AATCGTGGAAACCAAGTTCAAT
1 AAAGTCCTAAAT-GACATAAACGGTAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAAT
* * * *
15788482 TATTCAGACAAGTTTAATATCATGTATTTAAGCTATCTAAACTGTTAAAATATAA-ATATAACTA
65 CATTCAG-CAAGTTTAATATCATGTATTAAAGCTATCTAAACTGTTAAAACAGAATATA-AACTA
*** * ** *
15788546 CAAAATTAAAATTTT-GCCCTTTAACAACACAAC
128 C-AAATTTGCATTTTGGCCATTTAACGGCACAAA
* * * *
15788579 AAAGTCCTAAAAAGATATAAATGGTAACTTTTTCACACATATCAA-CTATGGAAACTAAGTTCAA
1 AAAGTCCT-AAATGACATAAACGGTAACTTTTTCACACATATCAATC-ATGGAAACCAAGTTCAA
* * * * * *
15788643 TCATTTGAGCAAGTTTAATATAATGTATTGATGTTATCCAAACTGTTAAAACA
64 TCA-TTCAGCAAGTTTAATATCATGTATTAAAGCTATCTAAACTGTTAAAACA
15788696 AAAAATAATT
Statistics
Matches: 723, Mismatches: 143, Indels: 86
0.76 0.15 0.09
Matches are distributed among these distances:
152 34 0.05
153 53 0.07
154 26 0.04
155 8 0.01
156 3 0.00
157 5 0.01
158 81 0.11
159 124 0.17
160 156 0.22
161 142 0.20
162 87 0.12
163 4 0.01
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (160 bp):
AAAGTCCTAAATGACATAAACGGTAACTTTTTCACACATATCAATCATGGAAACCAAGTTCAATC
ATTCAGCAAGTTTAATATCATGTATTAAAGCTATCTAAACTGTTAAAACAGAATATAAACTACAA
ATTTGCATTTTGGCCATTTAACGGCACAAA
Found at i:15798311 original size:19 final size:19
Alignment explanation
Indices: 15798256--15798316 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
15798246 TCAAATATTA
*
15798256 TTTAGGGTTTTAACTAGGG
1 TTTAGGGTTTTAATTAGGG
* *
15798275 TTTTGGGATTTTACTTAGGG
1 TTTAGGG-TTTTAATTAGGG
* *
15798295 TTTAGGGTTTTATTTAGAG
1 TTTAGGGTTTTAATTAGGG
15798314 TTT
1 TTT
15798317 TCAGTTTCAC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 19 0.54
20 16 0.46
ACGTcount: A:0.18, C:0.03, G:0.28, T:0.51
Consensus pattern (19 bp):
TTTAGGGTTTTAATTAGGG
Found at i:15798317 original size:39 final size:38
Alignment explanation
Indices: 15798256--15798335 Score: 97
Period size: 39 Copynumber: 2.1 Consensus size: 38
15798246 TCAAATATTA
* ** *
15798256 TTTAGGGTTTTAACTAGGGTTTTGGGATTTTACTTAGGG
1 TTTAGGGTTTTAACTAGAGTTTTCAG-TTTCACTTAGGG
**
15798295 TTTAGGGTTTTATTTAGAGTTTTCAGTTTCACTTAGGG
1 TTTAGGGTTTTAACTAGAGTTTTCAGTTTCACTTAGGG
15798333 TTT
1 TTT
15798336 CATGTGTCAC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
38 14 0.40
39 21 0.60
ACGTcount: A:0.17, C:0.06, G:0.26, T:0.50
Consensus pattern (38 bp):
TTTAGGGTTTTAACTAGAGTTTTCAGTTTCACTTAGGG
Found at i:15798330 original size:19 final size:20
Alignment explanation
Indices: 15798308--15798350 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
15798298 AGGGTTTTAT
* *
15798308 TTAGAGTTTTCA-GTTTCAC
1 TTAGAGGTTTCATGTGTCAC
15798327 TTAG-GGTTTCATGTGTCAC
1 TTAGAGGTTTCATGTGTCAC
15798346 TTAGA
1 TTAGA
15798351 ATTTAGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.44
Consensus pattern (20 bp):
TTAGAGGTTTCATGTGTCAC
Found at i:15798451 original size:12 final size:13
Alignment explanation
Indices: 15798436--15798466 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
15798426 CACTTAGGGT
15798436 TTTAGGATTTT-A
1 TTTAGGATTTTAA
15798448 TTTAGGATTTTAA
1 TTTAGGATTTTAA
15798461 TTTAGG
1 TTTAGG
15798467 GTTTCAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.55
Consensus pattern (13 bp):
TTTAGGATTTTAA
Found at i:15798666 original size:3 final size:3
Alignment explanation
Indices: 15798603--15798649 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
15798593 TTACAATTTA
*
15798603 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
15798650 ATTCACCTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:15798675 original size:15 final size:15
Alignment explanation
Indices: 15798599--15798676 Score: 72
Period size: 15 Copynumber: 5.3 Consensus size: 15
15798589 TTCGTTACAA
15798599 TTTA-TATTATTATT
1 TTTATTATTATTATT
*
15798613 GTTATTATTATTATT
1 TTTATTATTATTATT
*
15798628 ATTATTATTATTATT
1 TTTATTATTATTATT
* *
15798643 ATTATTA--ATTCACCT
1 TTTATTATTATT-A-TT
*
15798658 TTTATTATTTTTATT
1 TTTATTATTATTATT
15798673 TTTA
1 TTTA
15798677 ATAATTTAAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
13 3 0.06
14 4 0.08
15 43 0.81
16 1 0.02
17 2 0.04
ACGTcount: A:0.28, C:0.04, G:0.01, T:0.67
Consensus pattern (15 bp):
TTTATTATTATTATT
Found at i:15805021 original size:26 final size:25
Alignment explanation
Indices: 15804971--15805041 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
15804961 TCTCACGAAA
* *
15804971 GCCTTAATTTTTTTTAGTTTAGCTT
1 GCCTTTATTTTTTTTTGTTTAGCTT
* *
15804996 TCCTTTATTTTTTTTTGTTATTGCTT
1 GCCTTTATTTTTTTTTGTT-TAGCTT
*
15805022 GCATCTT-TTTTTTTTTGTTT
1 GCCT-TTATTTTTTTTTGTTT
15805042 TCTTGGTTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
25 17 0.45
26 19 0.50
27 2 0.05
ACGTcount: A:0.10, C:0.11, G:0.10, T:0.69
Consensus pattern (25 bp):
GCCTTTATTTTTTTTTGTTTAGCTT
Found at i:15806431 original size:33 final size:33
Alignment explanation
Indices: 15806387--15806757 Score: 113
Period size: 33 Copynumber: 11.4 Consensus size: 33
15806377 GCTAAACTAA
* * * *
15806387 GCTTAATTTTTCGTTTGGTGCCAGCGAGATTAG
1 GCTTAAATTTTCATTTAGTGCCAGCGAAATTAG
* ** *
15806420 GCTTAAATTTTCATTTAGTGCTAGTTAAATTGG
1 GCTTAAATTTTCATTTAGTGCCAGCGAAATTAG
* * ** *
15806453 GCTTAAATTTTCA-TTAGGGCTAGATAATTTAG
1 GCTTAAATTTTCATTTAGTGCCAGCGAAATTAG
* ** * * *
15806485 GCTTAAATGTTCCATTGGGTGCCAACTAAACT-G
1 GCTTAAAT-TTTCATTTAGTGCCAGCGAAATTAG
* *
15806518 GACTTAAGTTTTCA-TTGGTGCCA--GATAATCTAG
1 G-CTTAAATTTTCATTTAGTGCCAGCGA-AAT-TAG
* * *
15806551 GCTTAAATTTGCA-TTATGTTCC-GACTAAA-TAGG
1 GCTTAAATTTTCATTTA-GTGCCAG-CGAAATTA-G
* * * **
15806584 GCTTAAATTTTCA-TTGGCT-CCTGCTAACCTAG
1 GCTTAAATTTTCATTTAG-TGCCAGCGAAATTAG
* ** * ** *
15806616 GCTTAAATTTGCATTGGGTGCTAGCTCAATTGG
1 GCTTAAATTTTCATTTAGTGCCAGCGAAATTAG
* * *
15806649 GCTTAAATTTGCA-TTGGTGCCA--GATAATTTG
1 GCTTAAATTTTCATTTAGTGCCAGCGA-AATTAG
** * *
15806680 AGCTTAAATTTTCATTGGGTGCCAGCTAAATTGG
1 -GCTTAAATTTTCATTTAGTGCCAGCGAAATTAG
* * * * *
15806714 GCTTAAATTTTTA-TTGGTGCTAGCTAAATTTG
1 GCTTAAATTTTCATTTAGTGCCAGCGAAATTAG
*
15806746 GCCTAAATTTTC
1 GCTTAAATTTTC
15806758 TTTGATGATA
Statistics
Matches: 260, Mismatches: 57, Indels: 43
0.72 0.16 0.12
Matches are distributed among these distances:
30 1 0.00
31 7 0.03
32 112 0.43
33 116 0.45
34 22 0.08
35 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.39
Consensus pattern (33 bp):
GCTTAAATTTTCATTTAGTGCCAGCGAAATTAG
Found at i:15806488 original size:32 final size:32
Alignment explanation
Indices: 15806416--15806796 Score: 208
Period size: 32 Copynumber: 11.8 Consensus size: 32
15806406 GCCAGCGAGA
* * *
15806416 TTAGGCTTAAATTTTCATTTAGTGCTAGTTAAA
1 TTAGGCTTAAATTTTCA-TTGGTGCTAGATAAT
*
15806449 TTGGGCTTAAATTTTCATTAGG-GCTAGATAAT
1 TTAGGCTTAAATTTTCATT-GGTGCTAGATAAT
* * *
15806481 TTAGGCTTAAATGTTCCATTGGGTGCCA-ACTAAA
1 TTAGGCTTAAAT-TTTCATT-GGTGCTAGA-TAAT
* * *
15806515 CT-GGACTTAAGTTTTCATTGGTGCCAGATAAT
1 TTAGG-CTTAAATTTTCATTGGTGCTAGATAAT
* * * * *
15806547 CTAGGCTTAAATTTGCATT-ATGTTCCGACTAA-
1 TTAGGCTTAAATTTTCATTGGTGCT-AGA-TAAT
* * * *
15806579 ATAGGGCTTAAATTTTCATTGGCTCCT-GCTAAC
1 TTA-GGCTTAAATTTTCATTGG-TGCTAGATAAT
* * *
15806612 CTAGGCTTAAATTTGCATTGGGTGCTAGCTCAA-
1 TTAGGCTTAAATTTTCATT-GGTGCTAGAT-AAT
* * *
15806645 TTGGGCTTAAATTTGCATTGGTGCCAGATAAT
1 TTAGGCTTAAATTTTCATTGGTGCTAGATAAT
* * *
15806677 TT-GAGCTTAAATTTTCATTGGGTGCCAGCTAAA
1 TTAG-GCTTAAATTTTCATT-GGTGCTAGATAAT
* * *
15806710 TTGGGCTTAAATTTTTATTGGTGCTAGCTAAAT
1 TTAGGCTTAAATTTTCATTGGTGCTAGAT-AAT
* * * *
15806743 TT-GGCCTAAATTTTCTTTGATGATAGATAAT
1 TTAGGCTTAAATTTTCATTGGTGCTAGATAAT
* *
15806774 TT-GAACTTAAA-TTTCATTAGTGC
1 TTAG-GCTTAAATTTTCATTGGTGC
15806797 CAATAATCTA
Statistics
Matches: 276, Mismatches: 50, Indels: 46
0.74 0.13 0.12
Matches are distributed among these distances:
31 19 0.07
32 128 0.46
33 111 0.40
34 16 0.06
35 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TTAGGCTTAAATTTTCATTGGTGCTAGATAAT
Found at i:15806492 original size:65 final size:65
Alignment explanation
Indices: 15806416--15806757 Score: 334
Period size: 65 Copynumber: 5.2 Consensus size: 65
15806406 GCCAGCGAGA
** *
15806416 TTAGGCTTAAATTTTCATTTAGTGCTAGTTAAATTGGGCTTAAATTTTCATTAGG-GCTAGATAA
1 TTAGGCTTAAATTTTCATTGGGTGCTAGCTAAATTGGGCTTAAATTTTCATT-GGTGCTAGATAA
15806480 T
65 T
* * * * * * *
15806481 TTAGGCTTAAATGTTCCATTGGGTGCCAACTAAACTGGACTTAAGTTTTCATTGGTGCCAGATAA
1 TTAGGCTTAAAT-TTTCATTGGGTGCTAGCTAAATTGGGCTTAAATTTTCATTGGTGCTAGATAA
15806546 T
65 T
* * ** * * * * *
15806547 CTAGGCTTAAATTTGCATTATGTTC-CGACTAAATAGGGCTTAAATTTTCATTGGCTCCT-GCTA
1 TTAGGCTTAAATTTTCATTGGGTGCTAG-CTAAATTGGGCTTAAATTTTCATTGG-TGCTAGATA
*
15806610 AC
64 AT
* * * * *
15806612 CTAGGCTTAAATTTGCATTGGGTGCTAGCTCAATTGGGCTTAAATTTGCATTGGTGCCAGATAAT
1 TTAGGCTTAAATTTTCATTGGGTGCTAGCTAAATTGGGCTTAAATTTTCATTGGTGCTAGATAAT
* * *
15806677 TT-GAGCTTAAATTTTCATTGGGTGCCAGCTAAATTGGGCTTAAATTTTTATTGGTGCTAGCTAA
1 TTAG-GCTTAAATTTTCATTGGGTGCTAGCTAAATTGGGCTTAAATTTTCATTGGTGCTAGAT-A
15806741 AT
64 AT
*
15806743 TT-GGCCTAAATTTTC
1 TTAGGCTTAAATTTTC
15806758 TTTGATGATA
Statistics
Matches: 224, Mismatches: 45, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
64 3 0.01
65 161 0.72
66 60 0.27
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (65 bp):
TTAGGCTTAAATTTTCATTGGGTGCTAGCTAAATTGGGCTTAAATTTTCATTGGTGCTAGATAAT
Found at i:15808741 original size:28 final size:28
Alignment explanation
Indices: 15808710--15808768 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
15808700 GTCATAATTA
* *
15808710 TTTTTT-TTTGTC-CTTTTTCTTTCCTTT
1 TTTTTTGTTTTTCACTTTTTCTAT-CTTT
*
15808737 TTTTTTGTTTTTCATTTTTTCTATCTTT
1 TTTTTTGTTTTTCACTTTTTCTATCTTT
15808765 TTTT
1 TTTT
15808769 GACATACCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 6 0.22
28 13 0.48
29 8 0.30
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.80
Consensus pattern (28 bp):
TTTTTTGTTTTTCACTTTTTCTATCTTT
Found at i:15812866 original size:26 final size:25
Alignment explanation
Indices: 15812827--15812880 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
15812817 CATTTTTTTC
*
15812827 TTTCATTTCATTTCATTTTGTTCTTT
1 TTTCATTTCATTTC-TTTTGTTATTT
* * *
15812853 TTTCTTTTCTTTTCTTTTTTTATTT
1 TTTCATTTCATTTCTTTTGTTATTT
15812878 TTT
1 TTT
15812881 TTATTTTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.07, C:0.13, G:0.02, T:0.78
Consensus pattern (25 bp):
TTTCATTTCATTTCTTTTGTTATTT
Found at i:15812869 original size:17 final size:16
Alignment explanation
Indices: 15812847--15812894 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
15812837 TTTCATTTTG
15812847 TTCTTTTTTCTTTTCTT
1 TTCTTTTTT-TTTTCTT
*
15812864 TTCTTTTTTTATTTTTT
1 TTCTTTTTTT-TTTCTT
*
15812881 TTATTTTTTGTTTT
1 TTCTTTTTT-TTTT
15812895 GCATGCCCGC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 1 0.04
17 25 0.93
18 1 0.04
ACGTcount: A:0.04, C:0.08, G:0.02, T:0.85
Consensus pattern (16 bp):
TTCTTTTTTTTTTCTT
Found at i:15817619 original size:18 final size:18
Alignment explanation
Indices: 15817565--15817624 Score: 50
Period size: 18 Copynumber: 3.4 Consensus size: 18
15817555 AATAATATGG
* *
15817565 ATGCATGACAATTGAA-T
1 ATGCATGACAATTTAAGA
* * * *
15817582 ATGAATGAAAATGTATGA
1 ATGCATGACAATTTAAGA
15817600 ATGCATGACAATTTAAGA
1 ATGCATGACAATTTAAGA
*
15817618 ATACATG
1 ATGCATG
15817625 TAACAACAAA
Statistics
Matches: 31, Mismatches: 11, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
17 11 0.35
18 20 0.65
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.28
Consensus pattern (18 bp):
ATGCATGACAATTTAAGA
Found at i:15817810 original size:20 final size:20
Alignment explanation
Indices: 15817787--15817866 Score: 74
Period size: 20 Copynumber: 4.1 Consensus size: 20
15817777 TTTAACTTAG
* *
15817787 GGTTTTGGTTTAAGGTTTAA
1 GGTTTTGGCTTAAGATTTAA
15817807 GGTTTTGGCTTAAGATTTAA
1 GGTTTTGGCTTAAGATTTAA
* * *
15817827 GGTTCTGGC-TAGGACTT-A
1 GGTTTTGGCTTAAGATTTAA
* * *
15817845 GGGTTTGGTTTAGGATTTAA
1 GGTTTTGGCTTAAGATTTAA
15817865 GG
1 GG
15817867 ATTGGTTTAG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
18 7 0.14
19 13 0.27
20 29 0.59
ACGTcount: A:0.20, C:0.05, G:0.33, T:0.42
Consensus pattern (20 bp):
GGTTTTGGCTTAAGATTTAA
Found at i:15817858 original size:19 final size:19
Alignment explanation
Indices: 15817836--15817877 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
15817826 AGGTTCTGGC
* *
15817836 TAGGACTTAGGGTTTGGTT
1 TAGGACTTAAGGATTGGTT
*
15817855 TAGGATTTAAGGATTGGTT
1 TAGGACTTAAGGATTGGTT
15817874 TAGG
1 TAGG
15817878 GTTAGTTTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.02, G:0.36, T:0.40
Consensus pattern (19 bp):
TAGGACTTAAGGATTGGTT
Found at i:15817927 original size:7 final size:7
Alignment explanation
Indices: 15817915--15817978 Score: 52
Period size: 7 Copynumber: 10.1 Consensus size: 7
15817905 AAGGTTCGGA
15817915 AGGGTTT
1 AGGGTTT
15817922 AGGGTTT
1 AGGGTTT
15817929 A-GGTTT
1 AGGGTTT
15817935 A--GTTT
1 AGGGTTT
*
15817940 AGGATTT
1 AGGGTTT
15817947 A--GTTT
1 AGGGTTT
*
15817952 AGGGCTT
1 AGGGTTT
*
15817959 GGGGTTT
1 AGGGTTT
15817966 --GGTTT
1 AGGGTTT
15817971 AGGGTTT
1 AGGGTTT
15817978 A
1 A
15817979 AAGGGTGGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
5 14 0.30
6 6 0.13
7 26 0.57
ACGTcount: A:0.16, C:0.02, G:0.38, T:0.45
Consensus pattern (7 bp):
AGGGTTT
Found at i:15817941 original size:11 final size:12
Alignment explanation
Indices: 15817925--15817954 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
15817915 AGGGTTTAGG
15817925 GTTTAGG-TTTA
1 GTTTAGGATTTA
15817936 GTTTAGGATTTA
1 GTTTAGGATTTA
15817948 GTTTAGG
1 GTTTAGG
15817955 GCTTGGGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (12 bp):
GTTTAGGATTTA
Found at i:15817941 original size:18 final size:17
Alignment explanation
Indices: 15817918--15817953 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
15817908 GTTCGGAAGG
*
15817918 GTTTAGGGTTTAGGTTTA
1 GTTTAGGATTTA-GTTTA
15817936 GTTTAGGATTTAGTTTA
1 GTTTAGGATTTAGTTTA
15817953 G
1 G
15817954 GGCTTGGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (17 bp):
GTTTAGGATTTAGTTTA
Found at i:15818033 original size:18 final size:18
Alignment explanation
Indices: 15818012--15818058 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
15818002 TTTTTGGTTG
15818012 GTTTAGGGTTTAGAGTT-A
1 GTTTAGGGTTTA-AGTTAA
15818030 GTTTAGGGTTTAAGTTAA
1 GTTTAGGGTTTAAGTTAA
*
15818048 GGTTAGGGTTT
1 GTTTAGGGTTT
15818059 GGTTTATGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (18 bp):
GTTTAGGGTTTAAGTTAA
Found at i:15820159 original size:20 final size:20
Alignment explanation
Indices: 15820126--15820163 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15820116 AATTAACCTG
*
15820126 AGTTTCATCTATTTTGACCA
1 AGTTTCATCAATTTTGACCA
*
15820146 AGTTTGATCAATTTTGAC
1 AGTTTCATCAATTTTGAC
15820164 TTTATTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (20 bp):
AGTTTCATCAATTTTGACCA
Found at i:15844232 original size:48 final size:47
Alignment explanation
Indices: 15844154--15844256 Score: 127
Period size: 47 Copynumber: 2.2 Consensus size: 47
15844144 CAAGCAGGCC
* * * *
15844154 CTTGGTGT-AGTTTTTGCCTTAGACACCTCTTTGGTAAAATGCTGGCA
1 CTTGGTGTGAGTTGTTACCTCAGACACCTCTTTGGT-AAATGCTAGCA
* *
15844201 CTTGGTGTGAGTTGTTACCTCAGACAGCTCTTTGGTAGATGCTAGCA
1 CTTGGTGTGAGTTGTTACCTCAGACACCTCTTTGGTAAATGCTAGCA
*
15844248 CTTAGTGTG
1 CTTGGTGTG
15844257 GCATGTGTAC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
47 25 0.52
48 23 0.48
ACGTcount: A:0.18, C:0.18, G:0.26, T:0.37
Consensus pattern (47 bp):
CTTGGTGTGAGTTGTTACCTCAGACACCTCTTTGGTAAATGCTAGCA
Found at i:15860445 original size:19 final size:20
Alignment explanation
Indices: 15860416--15860463 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
15860406 ATCAAATATG
* *
15860416 GTCAAACTTAGTC-AATAAA
1 GTCAAAATTAGTCAAACAAA
*
15860435 GTTAAAATTAGTCAAACAAA
1 GTCAAAATTAGTCAAACAAA
15860455 GTCAAAATT
1 GTCAAAATT
15860464 TCATAAAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.27
Consensus pattern (20 bp):
GTCAAAATTAGTCAAACAAA
Found at i:15860920 original size:143 final size:142
Alignment explanation
Indices: 15860610--15861007 Score: 441
Period size: 143 Copynumber: 2.8 Consensus size: 142
15860600 CAAAATTATG
* * * * * * * *
15860610 AAAATACCCTTTAAGGGTATTTTCATAATTTAGCCTTCTTGATCTTAAATTTTTATGAAAC-TTT
1 AAAATAACCTTTTAGGGTATTTTCATAATTTGGCCTT-TTAAGCTCAGATTTTCATGAAACTTTT
* * *
15860674 CTAGATTTCAATTTTATAATATTTCATAATTTTTGGTGCATTTCAAATCATAACAATACCCCGAG
65 C-AGATTTCAATTTTATAATATTTCATGATTTTTGGTGCATTTCAAATCACAACAATACCCCGAA
15860739 AGATGTGAAATTAC
129 AGATGTGAAATTAC
*
15860753 AAAAT-ACCTTTTAAGGGTATTTTCATAATTTGGCCTTTTTAGCTCAGATTTTCATG-AACTTTT
1 AAAATAACCTTTT-AGGGTATTTTCATAATTTGGCCTTTTAAGCTCAGATTTTCATGAAACTTTT
* * * *** *
15860816 CAGATCTT-AATTTCATAATATTTCATGATTTTTGGTGTATTTGAAATCACGGTAGTACCCCCGA
65 CAGAT-TTCAATTTTATAATATTTCATGATTTTTGGTGCATTTCAAATCACAACAATA-CCCCGA
15860880 AATG-TGTGAAATTAC
128 AA-GATGTGAAATTAC
* * *
15860895 AAAAATAACCTTTTAGGGTATTTTCATAATTTGACATTTCTAAGCACAGATTTTCATGAAACTTT
1 -AAAATAACCTTTTAGGGTATTTTCATAATTTGGCCTTT-TAAGCTCAGATTTTCATGAAACTTT
* * *
15860960 AT-ATATTTCAATTTTATAATATTTCATGATATTTGGTGC-TTTAAAATC
64 -TCAGATTTCAATTTTATAATATTTCATGATTTTTGGTGCATTTCAAATC
15861008 TCAAAAATGA
Statistics
Matches: 217, Mismatches: 27, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
141 47 0.22
142 43 0.20
143 57 0.26
144 33 0.15
145 36 0.17
146 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (142 bp):
AAAATAACCTTTTAGGGTATTTTCATAATTTGGCCTTTTAAGCTCAGATTTTCATGAAACTTTTC
AGATTTCAATTTTATAATATTTCATGATTTTTGGTGCATTTCAAATCACAACAATACCCCGAAAG
ATGTGAAATTAC
Found at i:15862027 original size:88 final size:86
Alignment explanation
Indices: 15861921--15862103 Score: 287
Period size: 88 Copynumber: 2.1 Consensus size: 86
15861911 AAAAAAGAAG
15861921 AAAGCCATGTAAAGAAGAAAACAAAGCTTTGTGGGGCTACACGG-TTGCATGACTTTTAAGATTG
1 AAAGCCATGTAAAGAAGAAAACAAAGCTTTGTGGGGCTACACGGCTTGCATGACTTTTAAGATTG
15861985 AAGAATAGAATAAATATTAAAAAA
66 AAGAA-A-AA-AAATATTAAAAAA
* * * *
15862009 AAAGCTATGTAAAGAAGAAAACAAAGCTTTGTGGGGCTACATGGCTTGCATGATTTTTAGGATTG
1 AAAGCCATGTAAAGAAGAAAACAAAGCTTTGTGGGGCTACACGGCTTGCATGACTTTTAAGATTG
15862074 AAGAAAAAAAATATTAAAAAAA
66 AAGAAAAAAAATATT-AAAAAA
15862096 AAAGCCAT
1 AAAGCCAT
15862104 CGTGTGCGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
86 7 0.08
87 15 0.17
88 43 0.49
89 23 0.26
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (86 bp):
AAAGCCATGTAAAGAAGAAAACAAAGCTTTGTGGGGCTACACGGCTTGCATGACTTTTAAGATTG
AAGAAAAAAAATATTAAAAAA
Found at i:15862607 original size:3 final size:3
Alignment explanation
Indices: 15862599--15862630 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
15862589 AAAGTTATGC
*
15862599 ATA ATA ATA ATA ATA ATA ATA ACA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
15862631 TTTAAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:15870075 original size:36 final size:36
Alignment explanation
Indices: 15869975--15870112 Score: 124
Period size: 36 Copynumber: 3.9 Consensus size: 36
15869965 TTTTTGATTG
* * * *
15869975 TTGGTGTTGT-CCAGTCATC-TTTACTTCCTAACCA
1 TTGGTGTTGTCCCAGTCATCTTTTATTTCTTGACTA
* *
15870009 TTGGTGTTGTCCTTA-TCA-CTTCTATTTCTTGACTA
1 TTGGTGTTGTCC-CAGTCATCTTTTATTTCTTGACTA
* ** *
15870044 TTGGTGTTATCCCAGTCATCTTTTATTTCTTGGTTG
1 TTGGTGTTGTCCCAGTCATCTTTTATTTCTTGACTA
*
15870080 TTGGTGTTGTCCCAATCAT-TTTTATCTTCTTGA
1 TTGGTGTTGTCCCAGTCATCTTTTAT-TTCTTGA
15870113 TCGACCCTTT
Statistics
Matches: 83, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
34 12 0.14
35 34 0.41
36 37 0.45
ACGTcount: A:0.14, C:0.20, G:0.16, T:0.49
Consensus pattern (36 bp):
TTGGTGTTGTCCCAGTCATCTTTTATTTCTTGACTA
Found at i:15870424 original size:35 final size:36
Alignment explanation
Indices: 15870348--15870424 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 36
15870338 TCTTTCCAAC
* *
15870348 GTTGGTGTTATTTTAATCATCTTTATCTTCTTGACT
1 GTTGGTGTTATCTTAATCATCTTTATCTTCTTAACT
* *
15870384 ATTGGTGTTATCTTGATCA-CTTCTAT-TTCTTAACT
1 GTTGGTGTTATCTTAATCATCTT-TATCTTCTTAACT
15870419 GTTGGT
1 GTTGGT
15870425 ATTGTTTCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
35 16 0.46
36 19 0.54
ACGTcount: A:0.17, C:0.14, G:0.16, T:0.53
Consensus pattern (36 bp):
GTTGGTGTTATCTTAATCATCTTTATCTTCTTAACT
Found at i:15870760 original size:71 final size:71
Alignment explanation
Indices: 15870685--15870927 Score: 181
Period size: 71 Copynumber: 3.4 Consensus size: 71
15870675 TCATTTCGAT
*
15870685 CATTGGTTTTATCTTGATCATCTTTATCTTCTCAAACATTAGTGTTGTCTCAATCA-TCTTTACT
1 CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAACATTAGTGTTGTC-CAATCATTCTTTA-T
15870749 TT-CTAAC
64 TTCCTAAC
* * * * * * * *
15870756 CATTGGTGTTGTCTTGGA-CATTTTTATCTTTTTAACCATTGGTGTTGTCCTATCATTTTTTATT
1 CATTGGTGTTATCTT-GATCATCTTTATCTTCTCAAACATTAGTGTTGTCCAATCATTCTTTATT
*
15870820 TCCTGAC
65 TCCTAAC
** * * * * * ** *
15870827 TGTTGGTGTCATCTTGATCATCTTTATCTT-TCTGATCGTTGGTGTTGTACCTGTCACT-TTTAT
1 CATTGGTGTTATCTTGATCATCTTTATCTTCTC-AAACATTAGTGTTGT-CCAATCATTCTTTAT
*
15870890 TTCTTAAC
64 TTCCTAAC
* * **
15870898 CATTAGTCTTATCTCAATCATCTTTATCTT
1 CATTGGTGTTATCTTGATCATCTTTATCTT
15870928 TTTGACCATT
Statistics
Matches: 136, Mismatches: 30, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
70 11 0.08
71 116 0.85
72 9 0.07
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.50
Consensus pattern (71 bp):
CATTGGTGTTATCTTGATCATCTTTATCTTCTCAAACATTAGTGTTGTCCAATCATTCTTTATTT
CCTAAC
Found at i:15870816 original size:36 final size:35
Alignment explanation
Indices: 15870480--15870939 Score: 130
Period size: 35 Copynumber: 13.0 Consensus size: 35
15870470 TGATCATCGA
* * * * *
15870480 TGTTGTCTCGATCATCTTTATCTTTTTTACTATTAG
1 TGTTGTC-CTATCATTTTTATCTTTTTAACCATTGG
* * * * * *
15870516 -GTTATCCTGGTCATCTTTATCTTCTCAACTATTGG
1 TGTTGTCCT-ATCATTTTTATCTTTTTAACCATTGG
*
15870551 TGTTGACC-AGTCATTTTTAT-TTTTTAACCATTGG
1 TGTTGTCCTA-TCATTTTTATCTTTTTAACCATTGG
* * * **
15870585 TGTTGT-CTCAGTTATTTTTA-CTTTCTGACCATTTA
1 TGTTGTCCT-A-TCATTTTTATCTTTTTAACCATTGG
* * ** **
15870620 TGTTATCCTACTCATCTTTA-CTTTTCGACTGTTGG
1 TGTTGTCCTA-TCATTTTTATCTTTTTAACCATTGG
* * * * * ** *
15870655 TATTGTCTCAATCATATTTGTCATTTCGATCATTGG
1 TGTTGTC-CTATCATTTTTATCTTTTTAACCATTGG
* * * * * * * *
15870691 TTTTATCTTGATCATCTTTATCTTCTCAAACATTAG
1 TGTTGTCCT-ATCATTTTTATCTTTTTAACCATTGG
* * *
15870727 TGTTGTCTCAATCATCTTTA-CTTTCTAACCATTGG
1 TGTTGTC-CTATCATTTTTATCTTTTTAACCATTGG
*
15870762 TGTTGTCTTGGA-CATTTTTATCTTTTTAACCATTGG
1 TGTTGTCCT--ATCATTTTTATCTTTTTAACCATTGG
** * **
15870798 TGTTGTCCTATCATTTTTTAT-TTCCTGACTGTTGG
1 TGTTGTCCTATCA-TTTTTATCTTTTTAACCATTGG
** * * * * * *
15870833 TGTCATCTTGATCATCTTTATCTTTCTGATCGTTGG
1 TGTTGTCCT-ATCATTTTTATCTTTTTAACCATTGG
* * * *
15870869 TGTTGTACCTGTCACTTTTAT-TTCTTAACCATTAG
1 TGTTGT-CCTATCATTTTTATCTTTTTAACCATTGG
* * * * *
15870904 TCTTATCTCAATCATCTTTATCTTTTTGACCATTGG
1 TGTTGTC-CTATCATTTTTATCTTTTTAACCATTGG
15870940 GGACTTTACC
Statistics
Matches: 306, Mismatches: 97, Indels: 42
0.69 0.22 0.09
Matches are distributed among these distances:
33 1 0.00
34 19 0.06
35 157 0.51
36 127 0.42
37 2 0.01
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.50
Consensus pattern (35 bp):
TGTTGTCCTATCATTTTTATCTTTTTAACCATTGG
Found at i:15871024 original size:35 final size:35
Alignment explanation
Indices: 15870977--15871184 Score: 114
Period size: 35 Copynumber: 5.9 Consensus size: 35
15870967 GTGCTGGTCC
* ** * *
15870977 GACTGTTGGTGTTGTCATGGTCATTTTATCTTTTT
1 GACTGTTAGTGTTGTCACAGTCATCTTATCTTCTT
15871012 GACTGTTAGTGTTGTCACAGTCATCTTATCTTCTT
1 GACTGTTAGTGTTGTCACAGTCATCTTATCTTCTT
** * ** * * * * *
15871047 GACCATTGGTGTCATCTCAATCATCTTTACCTTATA
1 GACTGTTAGTGTTGTCACAGTCATC-TTATCTTCTT
* * * * **
15871083 GAC-ATCAGAGTTATCTTAGTCATCTTATCTT-TT
1 GACTGTTAGTGTTGTCACAGTCATCTTATCTTCTT
* * *
15871116 AACTGTTAGTGTTGTCCCAATCATCTTTATCTTCTT
1 GACTGTTAGTGTTGTCACAGTCATC-TTATCTTCTT
* * * * *
15871152 AATTGTTAGTGTTATCTCAGTTATCTTTATCTT
1 GACTGTTAGTGTTGTCACAGTCATC-TTATCTT
15871185 TTCAACCTTT
Statistics
Matches: 133, Mismatches: 36, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
33 3 0.02
34 20 0.15
35 70 0.53
36 40 0.30
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (35 bp):
GACTGTTAGTGTTGTCACAGTCATCTTATCTTCTT
Found at i:15871290 original size:35 final size:35
Alignment explanation
Indices: 15871232--15871305 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
15871222 CGACCGTTAA
* * *
15871232 TGTTGTCCTGGTCATCTTCACTTCATAACCATTTG
1 TGTTATCCTGATCATCTTCACTTCATAACCATTGG
*
15871267 TGTTATCCTGATCATCATT-ACTTCCTAACCATTGG
1 TGTTATCCTGATCATC-TTCACTTCATAACCATTGG
15871302 TGTT
1 TGTT
15871306 CTTCTAGTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 32 0.94
36 2 0.06
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (35 bp):
TGTTATCCTGATCATCTTCACTTCATAACCATTGG
Found at i:15871490 original size:37 final size:36
Alignment explanation
Indices: 15871435--15871529 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 36
15871425 TTCTTAACTG
* *
15871435 TTAGTGTTATCCTAGTCATCTTTATATTTCAGATCA
1 TTAGTGTTATCCTAGTCATCTTTATATTGCAGACCA
* * * *
15871471 TTGGTGTTATCCTTGGTCATCTTTATCTTGCTGACCA
1 TTAGTGTTATCC-TAGTCATCTTTATATTGCAGACCA
*
15871508 TTAGTGTTATCCAAGTCA-CTTT
1 TTAGTGTTATCCTAGTCATCTTT
15871530 TCTTTTTTGA
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
35 4 0.08
36 15 0.31
37 30 0.61
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.46
Consensus pattern (36 bp):
TTAGTGTTATCCTAGTCATCTTTATATTGCAGACCA
Found at i:15871772 original size:35 final size:35
Alignment explanation
Indices: 15871438--15872100 Score: 196
Period size: 35 Copynumber: 18.8 Consensus size: 35
15871428 TTAACTGTTA
* * *
15871438 GTGTTATCCTAGTCATCTTTA-TATTTCAGATCATTG
1 GTGTTGTCCTAGTCATCTTTACT-TTT-TGACCATTG
* * ** *
15871474 GTGTTATCCTTGGTCATCTTTATCTTGCTGACCATTA
1 GTGTTGTCC-TAGTCATCTTTA-CTTTTTGACCATTG
* * * *
15871511 GTGTTATCCAAGTCA-CTTTTCTTTTTTGACTATTG
1 GTGTTGTCCTAGTCATCTTTAC-TTTTTGACCATTG
* *
15871546 GTGTTGTCCTTA-TCATCTTTTACTTTTTAACCGTTG
1 GTGTTGTCC-TAGTCATC-TTTACTTTTTGACCATTG
* * *
15871582 GTGTTATCCTGGTCATCTTTATCTTTTCGACCATTG
1 GTGTTGTCCTAGTCATCTTTA-CTTTTTGACCATTG
** * * *
15871618 GCATTAT-CTCGGTCA-CTTTTATTTTTTGACCATTG
1 GTGTTGTCCT-AGTCATC-TTTACTTTTTGACCATTG
* * * *
15871653 GTGTTGT-CTCGGTCA-CTTT-TTTTTCTCGACTATTA
1 GTGTTGTCCT-AGTCATCTTTACTTTT-T-GACCATTG
* *
15871688 GTGTTGTCCTAGTCATCTTTA-TCTTCTGACCATTA
1 GTGTTGTCCTAGTCATCTTTACT-TTTTGACCATTG
* * * *
15871723 GTGTTATCCCAATCATCTTTACGTTTTGACCATTG
1 GTGTTGTCCTAGTCATCTTTACTTTTTGACCATTG
* * **** * *
15871758 GTGTTGTCCTAATCATC-CTATCTTCCCAACTATTA
1 GTGTTGTCCTAGTCATCTTTA-CTTTTTGACCATTG
* * * ** * *** *
15871793 GTGCTAT-CTTGATCATCTTTATCTTCCTAATTGTTC
1 GTGTTGTCCTAG-TCATCTTTA-CTTTTTGACCATTG
* * *
15871829 ATGTTGTCCTTGTTATC-TTATCTTTTTGACCATTG
1 GTGTTGTCCTAGTCATCTTTA-CTTTTTGACCATTG
* * *
15871864 GTGTTGTCC-CGATCATC-TTACCTCTTGACCATTG
1 GTGTTGTCCTAG-TCATCTTTACTTTTTGACCATTG
* * ** * *
15871898 GTGTTATCCTGGTCATCTTT-CTACTCCTGATCAATG
1 GTGTTGTCCTAGTCATCTTTACT--TTTTGACCATTG
* * * * * *
15871934 GTGTTATCTTGGTCATC-TTACCTCTTGACCGTTG
1 GTGTTGTCCTAGTCATCTTTACTTTTTGACCATTG
* * * ** **
15871968 GTGTTGTTCC-GGTTATCTTTATCTTCTTGATTAACG
1 GTGTTG-TCCTAGTCATCTTTA-CTTTTTGACCATTG
* *
15872004 GTGTTGTCCTAGTTATCTTTATCTTCTTGACCATT-
1 GTGTTGTCCTAGTCATCTTTA-CTTTTTGACCATTG
* * *
15872039 GTGTTAG-CCCAGTCAT-TTTATCTTTTCGACCATTA
1 GTGTT-GTCCTAGTCATCTTTA-CTTTTTGACCATTG
* * * *
15872074 GTGTTATCCGAGTAATCTTTATTTTTT
1 GTGTTGTCCTAGTCATCTTTACTTTTT
15872101 AACCTACAGT
Statistics
Matches: 479, Mismatches: 112, Indels: 73
0.72 0.17 0.11
Matches are distributed among these distances:
33 5 0.01
34 71 0.15
35 208 0.43
36 157 0.33
37 36 0.08
38 1 0.00
39 1 0.00
ACGTcount: A:0.16, C:0.21, G:0.15, T:0.47
Consensus pattern (35 bp):
GTGTTGTCCTAGTCATCTTTACTTTTTGACCATTG
Found at i:15871790 original size:105 final size:104
Alignment explanation
Indices: 15871474--15871818 Score: 302
Period size: 105 Copynumber: 3.2 Consensus size: 104
15871464 CAGATCATTG
* *
15871474 GTGTTATCCTTGGTCATCTTTATCTTGCTGACCATTAGTGTTAT-CCAAGTCACTTTTCTTTTTT
1 GTGTTATCC-TAGTCATCTTTATCTT-CTGACCATTAGTGTTATCCCAA-TCACTTTAC-TTTTT
* * * * ** *
15871538 GACTATTGGTGTTGTCCTTATCATCTTTTACTTTTTAACCGTTG
62 GACCATTGGTGTTGTCCTAATCATCTTTT-CTTCTCAACTATTA
* * * ** * ** *
15871582 GTGTTATCCTGGTCATCTTTATCTTTTCGACCATTGGCATTATCTCGGTCACTTTTATTTTTTGA
1 GTGTTATCCTAGTCATCTTTATCTTCT-GACCATTAGTGTTATCCCAATCAC-TTTACTTTTTGA
** * *
15871647 CCATTGGTGTTGT-CTCGGTCA-CTTTTTTTTCTCGACTATTA
64 CCATTGGTGTTGTCCT-AATCATC-TTTTCTTCTCAACTATTA
* *
15871688 GTGTTGTCCTAGTCATCTTTATCTTCTGACCATTAGTGTTATCCCAATCATCTTTACGTTTTGAC
1 GTGTTATCCTAGTCATCTTTATCTTCTGACCATTAGTGTTATCCCAATCA-CTTTACTTTTTGAC
* * *
15871753 CATTGGTGTTGTCCTAATCATCCTATCTTCCCAACTATTA
65 CATTGGTGTTGTCCTAATCATCTTTTCTTCTCAACTATTA
* *
15871793 GTGCTAT-CTTGATCATCTTTATCTTC
1 GTGTTATCCTAG-TCATCTTTATCTTC
15871819 CTAATTGTTC
Statistics
Matches: 188, Mismatches: 40, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
104 3 0.02
105 75 0.40
106 39 0.21
107 58 0.31
108 13 0.07
ACGTcount: A:0.17, C:0.22, G:0.14, T:0.48
Consensus pattern (104 bp):
GTGTTATCCTAGTCATCTTTATCTTCTGACCATTAGTGTTATCCCAATCACTTTACTTTTTGACC
ATTGGTGTTGTCCTAATCATCTTTTCTTCTCAACTATTA
Found at i:15871897 original size:34 final size:34
Alignment explanation
Indices: 15871854--15871972 Score: 139
Period size: 34 Copynumber: 3.4 Consensus size: 34
15871844 TCTTATCTTT
* * *
15871854 TTGACCATTGGTGTTGTCCCGATCATCTTACCTC
1 TTGACCATTGGTGTTATCCTGGTCATCTTACCTC
*
15871888 TTGACCATTGGTGTTATCCTGGTCATCTTTCTACTC
1 TTGACCATTGGTGTTATCCTGGTCATCTTAC--CTC
* * * *
15871924 CTGATCAATGGTGTTATCTTGGTCATCTTACCTC
1 TTGACCATTGGTGTTATCCTGGTCATCTTACCTC
*
15871958 TTGACCGTTGGTGTT
1 TTGACCATTGGTGTT
15871973 GTTCCGGTTA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
34 41 0.59
36 29 0.41
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.42
Consensus pattern (34 bp):
TTGACCATTGGTGTTATCCTGGTCATCTTACCTC
Found at i:15871986 original size:34 final size:33
Alignment explanation
Indices: 15871854--15871986 Score: 122
Period size: 34 Copynumber: 3.8 Consensus size: 33
15871844 TCTTATCTTT
* *
15871854 TTGACCATTGGTGTTGTCCCGATCATCTTACCTC
1 TTGACCATTGGTGTTAT-CCGGTCATCTTACCTC
*
15871888 TTGACCATTGGTGTTATCCTGGTCATCTTTCTACTC
1 TTGACCATTGGTGTTATCC-GGTCATCTTAC--CTC
* * * *
15871924 CTGATCAATGGTGTTATCTTGGTCATCTTACCTC
1 TTGACCATTGGTGTTATC-CGGTCATCTTACCTC
* * *
15871958 TTGACCGTTGGTGTTGTTCCGGTTATCTT
1 TTGACCATTGGTGTT-ATCCGGTCATCTT
15871987 TATCTTCTTG
Statistics
Matches: 79, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
33 2 0.03
34 47 0.59
35 2 0.03
36 28 0.35
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.43
Consensus pattern (33 bp):
TTGACCATTGGTGTTATCCGGTCATCTTACCTC
Found at i:15872187 original size:36 final size:35
Alignment explanation
Indices: 15872088--15872223 Score: 96
Period size: 36 Copynumber: 3.8 Consensus size: 35
15872078 TATCCGAGTA
* * * *
15872088 ATCTTTATTTTTTAACCTAC-AGTGCTATCTCAATC
1 ATCTTTATTTTTTGACCTACGA-TGTTGTCCCAATC
* * ** **
15872123 ATATTTGTTTTCTTGA-CTATTAATGTTGTCCCGGTC
1 ATCTTTATTTT-TTGACCTA-CGATGTTGTCCCAATC
* *
15872159 ATCTTTATTTTTCTGACCTACGGTGTTGTCTCAATC
1 ATCTTTATTTTT-TGACCTACGATGTTGTCCCAATC
* *
15872195 ATTTTTATTTTTTGACTTACGATGTTGTC
1 ATCTTTATTTTTTGACCTACGATGTTGTC
15872224 TTGGTTATCT
Statistics
Matches: 76, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
35 28 0.37
36 44 0.58
37 4 0.05
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (35 bp):
ATCTTTATTTTTTGACCTACGATGTTGTCCCAATC
Found at i:15872234 original size:71 final size:70
Alignment explanation
Indices: 15872088--15872223 Score: 168
Period size: 72 Copynumber: 1.9 Consensus size: 70
15872078 TATCCGAGTA
*
15872088 ATCTTTATTTTTTAACCTACAGTGCTATCTCAATCATATTTGTTTTCTTGACTATTAATGTTGTC
1 ATCTTTATTTTTTAACCTACAGTGCTATCTCAATCATATTTATTTTCTTGAC-ATTAATGTTGTC
15872153 CCGGTC
65 CCGGTC
* * * * *
15872159 ATCTTTATTTTTCTGACCTACGGTGTTGTCTCAATCATTTTTATTTT-TTGAC-TTACGATGTTG
1 ATCTTTATTTTT-TAACCTACAGTGCTATCTCAATCATATTTATTTTCTTGACATTA--ATGTTG
15872222 TC
63 TC
15872224 TTGGTTATCT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
69 3 0.05
71 25 0.45
72 28 0.50
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.50
Consensus pattern (70 bp):
ATCTTTATTTTTTAACCTACAGTGCTATCTCAATCATATTTATTTTCTTGACATTAATGTTGTCC
CGGTC
Found at i:15873344 original size:143 final size:143
Alignment explanation
Indices: 15873123--15873665 Score: 460
Period size: 145 Copynumber: 3.8 Consensus size: 143
15873113 GGGAATTACA
* ** * * *** * *
15873123 AAATTACCAAAATACGTTTTAGGGGTATTTTCGTAATTTAGCTTTCTTGAGCT-TGAATTTTCAT
1 AAATTACTAAAATACCCTTTAGGGGTATTTTCATAATTTAGCATTCCCAAGCTCAG-ATTGTCAT
15873187 GAAACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTTGTGCATTTGAAATCATAGCAAT
65 GAAACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTTGTGCATTTGAAATCATAGCAAT
*
15873252 -CCCCGAA-ATATGTG
130 ACCCC-AAGAGA-GTG
* ** *
15873266 AAATTACTAAAATGCCCTTTAGGGGTATTTTTGTAATTT-GATATTCTCGC-A-CTCAGATTGTC
1 AAATTACTAAAATACCCTTTAGGGGTATTTTCATAATTTAG-CATTC-C-CAAGCTCAGATTGTC
* * * * *
15873328 ATGAAAC-TTTCTAGATCTCAGTTTCATAATATTTTTTATGATTTTTAGTGCAATTGAAATCACA
63 ATGAAACTTTTC-AGATCTCAATTTCATAATA--TTTCATGATTTTTTGTGCATTTGAAATCATA
* *
15873392 TCAATACCCCAAGGGAGTG
125 GCAATACCCCAAGAGAGTG
* * * * *
15873411 AAATTACTAAAATACCCTTTAGGGGTATTTTCATAATTTAGCCTTCCCAAGGTTAGATTTTTATG
1 AAATTACTAAAATACCCTTTAGGGGTATTTTCATAATTTAGCATTCCCAAGCTCAGATTGTCATG
* * * *
15873476 AAACTTTTCATATCTTAATTTCATAATATTTCATGA-TTTTTGATGCATTTGAAATCATAACAGT
66 AAACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTTG-TGCATTTGAAATCATAGCAAT
* * *
15873540 ATCTCAAGAAGTGTG
130 ACCCCAAG-AGAGTG
* **** * *
15873555 AAATTAAC-AAAATACCCTTTAGGGATATTTTCATAATTT-GACATTTTTTAGCTC-GAATTTTT
1 AAATT-ACTAAAATACCCTTTAGGGGTATTTTCATAATTTAG-CATTCCCAAGCTCAG-ATTGTC
* * * * * *
15873617 ACGAAACTTTTCAAATCTCAATTTTATAATATTTTATAATTTTTGGTGC
63 ATGAAACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTTGTGC
15873666 TTTAATATCC
Statistics
Matches: 325, Mismatches: 56, Indels: 37
0.78 0.13 0.09
Matches are distributed among these distances:
142 10 0.03
143 102 0.31
144 91 0.28
145 112 0.34
146 10 0.03
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.41
Consensus pattern (143 bp):
AAATTACTAAAATACCCTTTAGGGGTATTTTCATAATTTAGCATTCCCAAGCTCAGATTGTCATG
AAACTTTTCAGATCTCAATTTCATAATATTTCATGATTTTTTGTGCATTTGAAATCATAGCAATA
CCCCAAGAGAGTG
Found at i:15887825 original size:10 final size:10
Alignment explanation
Indices: 15887810--15887839 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
15887800 TTTTATGTTG
15887810 ATTTGTTCAT
1 ATTTGTTCAT
15887820 ATTTGTTCAT
1 ATTTGTTCAT
*
15887830 ACTTGTTCAT
1 ATTTGTTCAT
15887840 TCAATTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.20, C:0.13, G:0.10, T:0.57
Consensus pattern (10 bp):
ATTTGTTCAT
Found at i:15890174 original size:11 final size:11
Alignment explanation
Indices: 15890158--15890231 Score: 76
Period size: 11 Copynumber: 6.4 Consensus size: 11
15890148 TATCTGTCAG
15890158 TATAAGTATGT
1 TATAAGTATGT
15890169 TATAAGTATGT
1 TATAAGTATGT
15890180 TATAAGTATGT
1 TATAAGTATGT
15890191 CAGTATAAGTATGT
1 ---TATAAGTATGT
** **
15890205 TATATCTATCAA
1 TATAAGTAT-GT
15890217 TATAAGTATGT
1 TATAAGTATGT
15890228 TATA
1 TATA
15890232 TAACTATCTC
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
11 33 0.65
12 7 0.14
14 11 0.22
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.43
Consensus pattern (11 bp):
TATAAGTATGT
Found at i:15890224 original size:23 final size:23
Alignment explanation
Indices: 15890169--15890233 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
15890159 ATAAGTATGT
* *
15890169 TATAAGTATGTTATAAGTATGTCAG
1 TATAAGTATGTTAT-A-TATATCAA
*
15890194 TATAAGTATGTTATATCTATCAA
1 TATAAGTATGTTATATATATCAA
15890217 TATAAGTATGTTATATA
1 TATAAGTATGTTATATA
15890234 ACTATCTCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 21 0.58
24 1 0.03
25 14 0.39
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (23 bp):
TATAAGTATGTTATATATATCAA
Found at i:15890234 original size:36 final size:36
Alignment explanation
Indices: 15890152--15890227 Score: 107
Period size: 36 Copynumber: 2.1 Consensus size: 36
15890142 TATAACTATC
* **
15890152 TGTCAGTATAAGTATGTTATAAGTATGTTATAAGTA
1 TGTCAGTATAAGTATGTTATAACTATAATATAAGTA
*
15890188 TGTCAGTATAAGTATGTTATATCTATCAATATAAGTA
1 TGTCAGTATAAGTATGTTATAACTAT-AATATAAGTA
15890225 TGT
1 TGT
15890228 TATATAACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
36 24 0.69
37 11 0.31
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (36 bp):
TGTCAGTATAAGTATGTTATAACTATAATATAAGTA
Found at i:15895592 original size:16 final size:17
Alignment explanation
Indices: 15895568--15895601 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
15895558 GTTTGAAGTT
15895568 TCTACAC-TTTATTTTC
1 TCTACACTTTTATTTTC
*
15895584 TCTATACTTTTATTTTC
1 TCTACACTTTTATTTTC
15895601 T
1 T
15895602 TACTTTCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.18, C:0.21, G:0.00, T:0.62
Consensus pattern (17 bp):
TCTACACTTTTATTTTC
Found at i:15896268 original size:6 final size:6
Alignment explanation
Indices: 15896259--15896360 Score: 87
Period size: 6 Copynumber: 17.0 Consensus size: 6
15896249 ACTTTGACTC
* * * * *
15896259 AAAAAT AAAAAT AAAATC AAAATC AAAATT ACAATT AAAATT AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
* ** ** * * *
15896307 AAAATC AAAAGC AAAAGC AAAATT AAATTT AAAATC AAATTT AAAATT
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT
15896355 AAAATT
1 AAAATT
15896361 TTTGGGCTTT
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 81 1.00
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.25
Consensus pattern (6 bp):
AAAATT
Found at i:15896304 original size:30 final size:30
Alignment explanation
Indices: 15896259--15896360 Score: 114
Period size: 30 Copynumber: 3.4 Consensus size: 30
15896249 ACTTTGACTC
* * *
15896259 AAAAATAAAAATAAAATCAAAATCAAAATT
1 AAAATTAAAATTAAAATTAAAATCAAAATT
* **
15896289 ACAATTAAAATTAAAATTAAAATCAAAAGC
1 AAAATTAAAATTAAAATTAAAATCAAAATT
** * *
15896319 AAAAGCAAAATTAAATTTAAAATCAAATTT
1 AAAATTAAAATTAAAATTAAAATCAAAATT
15896349 AAAATTAAAATT
1 AAAATTAAAATT
15896361 TTTGGGCTTT
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.66, C:0.07, G:0.02, T:0.25
Consensus pattern (30 bp):
AAAATTAAAATTAAAATTAAAATCAAAATT
Found at i:15911168 original size:27 final size:27
Alignment explanation
Indices: 15911130--15911182 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
15911120 ACACACATAC
15911130 ATTTGTACACACATCGTTCACGTAAAT
1 ATTTGTACACACATCGTTCACGTAAAT
*
15911157 ATTTGTTCACACATCGTTCACGTAAA
1 ATTTGTACACACATCGTTCACGTAAA
15911183 CACTCATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (27 bp):
ATTTGTACACACATCGTTCACGTAAAT
Found at i:15911421 original size:27 final size:27
Alignment explanation
Indices: 15911383--15911435 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
15911373 ACACACATAC
15911383 ATTTGTACACACATCGTTCACGTAAAT
1 ATTTGTACACACATCGTTCACGTAAAT
*
15911410 ATTTGTTCACACATCGTTCACGTAAA
1 ATTTGTACACACATCGTTCACGTAAA
15911436 CACTCATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (27 bp):
ATTTGTACACACATCGTTCACGTAAAT
Found at i:15911550 original size:253 final size:253
Alignment explanation
Indices: 15911102--15911595 Score: 979
Period size: 253 Copynumber: 2.0 Consensus size: 253
15911092 TTTTTGGCAT
15911102 CATATGATATTATGCACAACACACATACATTTGTACACACATCGTTCACGTAAATATTTGTTCAC
1 CATATGATATTATGCACAACACACATACATTTGTACACACATCGTTCACGTAAATATTTGTTCAC
15911167 ACATCGTTCACGTAAACACTCATGTACAAGCATTAATTCACTTGTCCATGTATATAAAAAGGATG
66 ACATCGTTCACGTAAACACTCATGTACAAGCATTAATTCACTTGTCCATGTATATAAAAAGGATG
15911232 TGGATCGTCAATTAAGGGCACTCTACTTTTTTGAGTTTCAATTTAATTGAAAATGAATCTTGTTT
131 TGGATCGTCAATTAAGGGCACTCTACTTTTTTGAGTTTCAATTTAATTGAAAATGAATCTTGTTT
15911297 CTTATTATTACATTATTCCATTTGCTCTCTTCGATTTTGTATAAAAATGAATCTTGTA
196 CTTATTATTACATTATTCCATTTGCTCTCTTCGATTTTGTATAAAAATGAATCTTGTA
*
15911355 CATATGATATTATGCACTACACACATACATTTGTACACACATCGTTCACGTAAATATTTGTTCAC
1 CATATGATATTATGCACAACACACATACATTTGTACACACATCGTTCACGTAAATATTTGTTCAC
15911420 ACATCGTTCACGTAAACACTCATGTACAAGCATTAATTCACTTGTCCATGTATATAAAAAGGATG
66 ACATCGTTCACGTAAACACTCATGTACAAGCATTAATTCACTTGTCCATGTATATAAAAAGGATG
15911485 TGGATCGTCAATTAAGGGCACTCTACTTTTTTGAGTTTCAATTTAATTGAAAATGAATCTTGTTT
131 TGGATCGTCAATTAAGGGCACTCTACTTTTTTGAGTTTCAATTTAATTGAAAATGAATCTTGTTT
15911550 CTTATTATTACATTATTCCATTTGCTCTCTTCGATTTTGTATAAAA
196 CTTATTATTACATTATTCCATTTGCTCTCTTCGATTTTGTATAAAA
15911596 TTTTAAATAT
Statistics
Matches: 240, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
253 240 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (253 bp):
CATATGATATTATGCACAACACACATACATTTGTACACACATCGTTCACGTAAATATTTGTTCAC
ACATCGTTCACGTAAACACTCATGTACAAGCATTAATTCACTTGTCCATGTATATAAAAAGGATG
TGGATCGTCAATTAAGGGCACTCTACTTTTTTGAGTTTCAATTTAATTGAAAATGAATCTTGTTT
CTTATTATTACATTATTCCATTTGCTCTCTTCGATTTTGTATAAAAATGAATCTTGTA
Found at i:15915366 original size:22 final size:22
Alignment explanation
Indices: 15915325--15915371 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
15915315 ATTATTCTTA
** *
15915325 AAGAGTTTTGGGCATTATTTGT
1 AAGAGTTTTGGGCACAATTTCT
*
15915347 AAGATTTTTGGGCACAATTTCT
1 AAGAGTTTTGGGCACAATTTCT
15915369 AAG
1 AAG
15915372 GTCATTGGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
AAGAGTTTTGGGCACAATTTCT
Found at i:15915570 original size:32 final size:33
Alignment explanation
Indices: 15915509--15915593 Score: 93
Period size: 32 Copynumber: 2.6 Consensus size: 33
15915499 CACTTTTATT
* *
15915509 TTTTACTTTAG-TGTAGTCCCATCATCTTCAT-G
1 TTTTACTTTAGCT-TAGTCCAATCACCTTCATCG
* *
15915541 TTTTACTTTAGCTTAGTTCAATCACCTTCATCT
1 TTTTACTTTAGCTTAGTCCAATCACCTTCATCG
* *
15915574 TTTTACCTTGGCTTAGTCCA
1 TTTTACTTTAGCTTAGTCCA
15915594 GTTACTTTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 26 0.59
33 18 0.41
ACGTcount: A:0.19, C:0.24, G:0.11, T:0.47
Consensus pattern (33 bp):
TTTTACTTTAGCTTAGTCCAATCACCTTCATCG
Found at i:15915588 original size:33 final size:32
Alignment explanation
Indices: 15915529--15915781 Score: 101
Period size: 32 Copynumber: 7.9 Consensus size: 32
15915519 GTGTAGTCCC
* * * *
15915529 ATCATCTTCATGTTTTACTTTAGCTTAGTTCA
1 ATCACCTTCATTTTTTACCTTGGCTTAGTTCA
*
15915561 ATCACCTTCATCTTTTTACCTTGGCTTAGTCCA
1 ATCACCTTCAT-TTTTTACCTTGGCTTAGTTCA
* * * * * * *
15915594 GTTACTTTCATTTTGTACCTTGGCTCA-ATCTG
1 ATCACCTTCATTTTTTACCTTGGCTTAGTTC-A
* *
15915626 TTCACCTTTATTTTTTACCTTGGCTTAG-TCTA
1 ATCACCTTCATTTTTTACCTTGGCTTAGTTC-A
* * * ** * * *
15915658 GTCACCCTGA-TTTCAACCTTGAG-TCAATCCA
1 ATCACCTTCATTTTTTACCTTG-GCTTAGTTCA
* * * *
15915689 ATTACCTTCATTTTTTA-CTTTGATTCA-ATCTA
1 ATCACCTTCATTTTTTACCTTGGCTT-AGTTC-A
* * * *
15915721 GTTATCTTCATTTTTTACCTT-ACTTAG-TCAA
1 ATCACCTTCATTTTTTACCTTGGCTTAGTTC-A
15915752 ATCACCTT-ATTTTTTAACCTTGGCTTAGTT
1 ATCACCTTCATTTTTT-ACCTTGGCTTAGTT
15915782 TGGTCACCCT
Statistics
Matches: 160, Mismatches: 47, Indels: 27
0.68 0.20 0.12
Matches are distributed among these distances:
30 8 0.05
31 38 0.24
32 85 0.53
33 29 0.18
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (32 bp):
ATCACCTTCATTTTTTACCTTGGCTTAGTTCA
Found at i:15915618 original size:32 final size:34
Alignment explanation
Indices: 15915535--15915663 Score: 110
Period size: 32 Copynumber: 4.0 Consensus size: 34
15915525 TCCCATCATC
* * * * *
15915535 TTCATGTTTTACTTTAGCTTAGTTCA-ATCACC-
1 TTCATTTTTTACCTTGGCTTAGTCCAGTTCACCT
15915567 TTCATCTTTTTACCTTGGCTTAGTCCAGTT-A-CT
1 TTCAT-TTTTTACCTTGGCTTAGTCCAGTTCACCT
* * * *
15915600 TTCATTTTGTACCTTGGCTCAAT-CTGTTCACCT
1 TTCATTTTTTACCTTGGCTTAGTCCAGTTCACCT
*
15915633 TT-ATTTTTTACCTTGGCTTAGTCTAG-TCACC
1 TTCATTTTTTACCTTGGCTTAGTCCAGTTCACC
15915664 CTGATTTCAA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
31 4 0.05
32 44 0.57
33 28 0.36
34 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.12, T:0.47
Consensus pattern (34 bp):
TTCATTTTTTACCTTGGCTTAGTCCAGTTCACCT
Found at i:15915771 original size:95 final size:94
Alignment explanation
Indices: 15915530--15915776 Score: 225
Period size: 95 Copynumber: 2.6 Consensus size: 94
15915520 TGTAGTCCCA
* * * *
15915530 TCATCTTCATGTTTTACTTTAGCTTAGTTCAATCACCTTCATCTTTTT-ACCTTGGCTTAGTCCA
1 TCATCTTCATTTTTTACCTTA-CTTAG-TCAATCACCTT-AT-TTTTTAACCTTGGCTCAATCCA
* * *
15915594 GTTACTTTCATTTTGTACCTTGGCTCAATCTGT
62 ATTACCTTCATTTTGTACCTTGACTCAATCTGT
* * * * * *
15915627 TCACCTTTATTTTTTACCTTGGCTTAGTCTAGTCACCCTGA--TTTCAACCTTGAG-TCAATCCA
1 TCATCTTCATTTTTTACCTT-ACTTAGTC-AATCA-CCTTATTTTTTAACCTTG-GCTCAATCCA
* * *
15915689 ATTACCTTCATTTTTTACTTTGATTCAATCTAGT
62 ATTACCTTCATTTTGTACCTTGACTCAATCT-GT
15915723 T-ATCTTCATTTTTTACCTTACTTAGTCAAATCACCTTATTTTTTAACCTTGGCT
1 TCATCTTCATTTTTTACCTTACTTAGTC-AATCACCTTATTTTTTAACCTTGGCT
15915777 TAGTTTGGTC
Statistics
Matches: 118, Mismatches: 23, Indels: 20
0.73 0.14 0.12
Matches are distributed among these distances:
93 4 0.03
94 15 0.13
95 64 0.54
96 6 0.05
97 26 0.22
98 3 0.03
ACGTcount: A:0.20, C:0.23, G:0.09, T:0.47
Consensus pattern (94 bp):
TCATCTTCATTTTTTACCTTACTTAGTCAATCACCTTATTTTTTAACCTTGGCTCAATCCAATTA
CCTTCATTTTGTACCTTGACTCAATCTGT
Found at i:15918152 original size:13 final size:13
Alignment explanation
Indices: 15918136--15918167 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15918126 TTCTTTTACC
15918136 TTTTTCTCTTTTT
1 TTTTTCTCTTTTT
*
15918149 TTTTTCTTTTTTT
1 TTTTTCTCTTTTT
15918162 TTTTTC
1 TTTTTC
15918168 CCCTTTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTCTTTTT
Found at i:15918963 original size:144 final size:142
Alignment explanation
Indices: 15918515--15919059 Score: 513
Period size: 144 Copynumber: 3.8 Consensus size: 142
15918505 AAATTTAACT
* * * * * * *
15918515 ATGATCTAGAGGTTTTCACTAAAAATCAACCTTGAA-AAAGTTAAATTACAAAATTACACCTAAA
1 ATGATCTAGAGCTTTTC-GTAAAAATCAACC-TCAAGAAGGTCAAATTATAAAAATACACCTAAA
* * * * *
15918579 GGGCATTTTAATAATTTCACCACTTTCTGAGGTGCAATCAAGGTTTCAATGCATTAAAATTCATG
64 GGGCATTTTGATAATTTCAAC-CTTTCTGAGATGCAATCAAGTTTTCAATGCATCAAAATTCATG
15918644 GAATAATATTAAAAC
128 GAATAATATTAAAAC
* * * * * * * *
15918659 AAGATATGGAGCTTCTCGCAAAAAACCAACCTCAAGAAGGTCAAATTATAAAAATACACTTGAAG
1 ATGATCTAGAGCTTTTCG-TAAAAATCAACCTCAAGAAGGTCAAATTATAAAAATACACCTAAAG
* * * * *
15918724 GGTATTTTGATAATTTC-ACCACTTCTGAAATGCAATCAAAGTTGTCAATGGATCAAAATTCATG
65 GGCATTTTGATAATTTCAACC-TTTCTGAGATGCAATC-AAGTTTTCAATGCATCAAAATTCATG
*
15918788 AAATAATATTAAAAC
128 GAATAATATTAAAAC
* * * *
15918803 ATAATCTAGAGCTTTTCGTAAAAAGTCAACCTCAAGAAGGTCGAATTATAAAAATACCCCTAAAT
1 ATGATCTAGAGCTTTTCGTAAAAA-TCAACCTCAAGAAGGTCAAATTATAAAAATACACCTAAAG
* * * *
15918868 GACATTTTGATAATTTCAACCTTTTTGAGATGCAATCAATGTTTTTAATGCATCAAAATTTATGG
65 GGCATTTTGATAATTTCAACCTTTCTGAGATGCAATCAA-GTTTTCAATGCATCAAAATTCATGG
15918933 AATAATATTAAAAC
129 AATAATATTAAAAC
* * ** * * * ** * *
15918947 ATGATCTAGAGTTTTTCATAAAAAAATTGACCTTAAAAAAGTCAAATTACGAAAATACTCTTAAA
1 ATGATCTAGAGCTTTTCGT--AAAAATCAACCTCAAGAAGGTCAAATTATAAAAATACACCTAAA
* * * *
15919012 GAGAATTTTGCTAATTTC-ACCTTTAC-GAGATGCAATCAAAATTTTCAA
64 GGGCATTTTGATAATTTCAACCTTT-CTGAGATGCAATC-AAGTTTTCAA
15919060 GAATCTAAAT
Statistics
Matches: 321, Mismatches: 69, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
142 1 0.00
143 24 0.07
144 244 0.76
145 47 0.15
146 5 0.02
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (142 bp):
ATGATCTAGAGCTTTTCGTAAAAATCAACCTCAAGAAGGTCAAATTATAAAAATACACCTAAAGG
GCATTTTGATAATTTCAACCTTTCTGAGATGCAATCAAGTTTTCAATGCATCAAAATTCATGGAA
TAATATTAAAAC
Found at i:15920617 original size:95 final size:95
Alignment explanation
Indices: 15920503--15920682 Score: 220
Period size: 95 Copynumber: 1.9 Consensus size: 95
15920493 ATATTTCAAA
** * * * *
15920503 TCAATCCTACTAATTTATTGGAGGATTTAAATCTCAAAT-TAAATTTTGCCAAACTATTGGAAGA
1 TCAATCCTACTAAACTATTGGAGGATATAAATC-CAAATAAAAATCTTACCAAACTATTGGAAGA
*
15920567 TTTGA-TGATTTATAAAAATAAAATAAAATTT
65 TTTGATTAATTT-TAAAAATAAAATAAAATTT
* ** *
15920598 TCAATCCTACTAAACTATTGGCGGATATGCATCGAAATAAAAATCTTACCAAACTATTGGAAGAT
1 TCAATCCTACTAAACTATTGGAGGATATAAATCCAAATAAAAATCTTACCAAACTATTGGAAGAT
*
15920663 TTTATTAATTTTAAAAATAA
66 TTGATTAATTTTAAAAATAA
15920683 TTAATTTCTT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
94 4 0.06
95 62 0.87
96 5 0.07
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.36
Consensus pattern (95 bp):
TCAATCCTACTAAACTATTGGAGGATATAAATCCAAATAAAAATCTTACCAAACTATTGGAAGAT
TTGATTAATTTTAAAAATAAAATAAAATTT
Found at i:15924324 original size:22 final size:22
Alignment explanation
Indices: 15924283--15924325 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15924273 GGACTAAAAC
*
15924283 TTTATTTTTTAGTTATTTTATT
1 TTTATTTTTTAGTTACTTTATT
15924305 TTTATTTTTTA-TTAACTTTAT
1 TTTATTTTTTAGTT-ACTTTAT
15924326 CTGAAGCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTATTTTTTAGTTACTTTATT
Found at i:15924656 original size:85 final size:84
Alignment explanation
Indices: 15924504--15924953 Score: 357
Period size: 85 Copynumber: 5.2 Consensus size: 84
15924494 ACCCAAAGAT
* * * * *
15924504 GGATTTGACATAGGCCAAAATTCAAAACAAAATGACCTGGATAGAA-TCAAAGTTTGAAATAAAT
1 GGATTTGGCATAGGCCAAAATCCAAAACAAAATGACCTGGATGGAACT-AAAGTCT-AAATAAGT
*
15924568 AACTTGAACTGAACCGAAAAA
64 AACTTGGACTGAACCGAAAAA
** ** * *
15924589 GGATTTGGCATAGGCCAAAATCCAAAACAAAATGACCTAAATAAAACCAAAGTATAAGATAAGTA
1 GGATTTGGCATAGGCCAAAATCCAAAACAAAATGACCTGGATGGAACTAAAGTCTAA-ATAAGTA
*
15924654 ACTTGGGCTGAACC-AAAGAA
65 ACTTGGACTGAACCGAAA-AA
* * * * * * * *
15924674 AGATTGGGCATAAGTCAAAATCTAAAAAAAAAAAAAAGACCTGAATGGAACTAAAGTCTAAAATA
1 GGATTTGGCATAGGCCAAAATC----CAAAACAAAATGACCTGGATGGAACTAAAGTCT-AAATA
* * *
15924739 AGTAACTTGGACTTAATCGAAGAA
61 AGTAACTTGGACTGAACCGAAAAA
* * *** * * *
15924763 GGATCTAGCATAGGTTGAAATCCAAAACAAAATTACTTGGATGGAACTGAAGTCTTAAATAAGTA
1 GGATTTGGCATAGGCCAAAATCCAAAACAAAATGACCTGGATGGAACTAAAGTC-TAAATAAGTA
* * *
15924828 ACTTGGACTTAATCGAAGAA
65 ACTTGGACTGAACCGAAAAA
* * *** * *
15924848 GGATATAGCATAGGTTGAAATCCAAAACAAAATGACTTAGATGGAACTAAAGTCTAAAATAAGTA
1 GGATTTGGCATAGGCCAAAATCCAAAACAAAATGACCTGGATGGAACTAAAGTCT-AAATAAGTA
* *
15924913 ACTTGGATTAAACCGAAGAAA
65 ACTTGGACTGAACCGAA-AAA
* *
15924934 -GATCTGGCATAAGCCAAAAT
1 GGATTTGGCATAGGCCAAAAT
15924954 TAAAATGACC
Statistics
Matches: 299, Mismatches: 54, Indels: 24
0.79 0.14 0.06
Matches are distributed among these distances:
84 6 0.02
85 226 0.76
86 3 0.01
89 60 0.20
90 4 0.01
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (84 bp):
GGATTTGGCATAGGCCAAAATCCAAAACAAAATGACCTGGATGGAACTAAAGTCTAAATAAGTAA
CTTGGACTGAACCGAAAAA
Found at i:15936472 original size:112 final size:113
Alignment explanation
Indices: 15936340--15936641 Score: 367
Period size: 113 Copynumber: 2.7 Consensus size: 113
15936330 AATGCCTTTA
* *
15936340 TTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCA-ATTTTGAAA-TTTTATCTTCAAGGA
1 TTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCATATTTTAAAATTTTTATCTTCAAAGA
* * * **
15936403 AAATTGATTCTTTCAACTTTTCCTTAAAGCATTTTTTTTAATTTTTATT
66 AAATTGATACTTTCAACTTTTCCTTAAA-AATTATTTGAAATTTTTATT
* * * *
15936452 TTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAGCATTTTTTAAAATTTTTATTTTGAAAGA
1 TTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCATATTTTAAAATTTTTATCTTCAAAGA
15936517 AAATTGATACTTTCAACTTTTCCTTAAAAATTATTTGAAATTTTTATT
66 AAATTGATACTTTCAACTTTTCCTTAAAAATTATTTGAAATTTTTATT
** * * * ** * * * *
15936565 TTCAAAAAAAATTGATACTTTAAACTTTTTCTCAAA-AATATTTTTTGAACTTTTGTTTTCAAAA
1 TTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCATA-TTTTAAAATTTTTATCTTCAAAG
15936629 AAAATTGATACTT
65 AAAATTGATACTT
15936642 CAATTTCTCT
Statistics
Matches: 163, Mismatches: 24, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
112 40 0.25
113 84 0.52
114 39 0.24
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (113 bp):
TTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCATATTTTAAAATTTTTATCTTCAAAGA
AAATTGATACTTTCAACTTTTCCTTAAAAATTATTTGAAATTTTTATT
Found at i:15936584 original size:56 final size:57
Alignment explanation
Indices: 15936340--15936641 Score: 362
Period size: 57 Copynumber: 5.4 Consensus size: 57
15936330 AATGCCTTTA
* * *
15936340 TTCAAGGAAAATTGATACTTTCAACTTTTTCTTAAAGCAA--TTTTGAAA-TTTTATC
1 TTCAAAGAAAATTGATACTTTCAACTTTTCCTTAAAG-AATTTTTTGAAATTTTTATT
* * * **
15936395 TTCAAGGAAAATTGATTCTTTCAACTTTTCCTTAAAGCATTTTTTTTAATTTTTATT
1 TTCAAAGAAAATTGATACTTTCAACTTTTCCTTAAAGAATTTTTTGAAATTTTTATT
* * *
15936452 TTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAGCATTTTTTAAAATTTTTATT
1 TTCAAAGAAAATTGATACTTTCAACTTTTCCTTAAAGAATTTTTTGAAATTTTTATT
* *
15936509 TTGAAAGAAAATTGATACTTTCAACTTTTCCTTAAA-AATTATTTGAAATTTTTATT
1 TTCAAAGAAAATTGATACTTTCAACTTTTCCTTAAAGAATTTTTTGAAATTTTTATT
* * * * * * *
15936565 TTCAAAAAAAATTGATACTTTAAACTTTTTCTCAAAAATATTTTTTG-AACTTTTGTT
1 TTCAAAGAAAATTGATACTTTCAACTTTTCCTTAAAGA-ATTTTTTGAAATTTTTATT
*
15936622 TTCAAAAAAAATTGATACTT
1 TTCAAAGAAAATTGATACTT
15936642 CAATTTCTCT
Statistics
Matches: 220, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
54 1 0.00
55 35 0.16
56 54 0.25
57 123 0.56
58 7 0.03
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (57 bp):
TTCAAAGAAAATTGATACTTTCAACTTTTCCTTAAAGAATTTTTTGAAATTTTTATT
Found at i:15939909 original size:22 final size:22
Alignment explanation
Indices: 15939882--15939932 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
15939872 ATATGAAAAT
* *
15939882 AAAATAATTTA-AAATTTTATTA
1 AAAATAATATATAAATTTT-GTA
15939904 AAAATAATATATAAATTTTGTA
1 AAAATAATATATAAATTTTGTA
15939926 AAAATAA
1 AAAATAA
15939933 AAAAATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATAATATATAAATTTTGTA
Found at i:15940113 original size:11 final size:11
Alignment explanation
Indices: 15940097--15940132 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
15940087 TCAGATGAAG
15940097 ATATATTTAAC
1 ATATATTTAAC
15940108 ATATATTTAAC
1 ATATATTTAAC
15940119 ATATATTTAAC
1 ATATATTTAAC
15940130 ATA
1 ATA
15940133 CTTCACGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATATTTAAC
Found at i:15940652 original size:1 final size:1
Alignment explanation
Indices: 15940646--15940675 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
15940636 TTTCTACGCG
*
15940646 TTTTTTTTTTCTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
15940676 ATAAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:15951540 original size:39 final size:39
Alignment explanation
Indices: 15951483--15951560 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
15951473 TGAGATTGGT
15951483 ATCCGAGTTGAACATGAAAAACATTATTGGATCTAGTGA
1 ATCCGAGTTGAACATGAAAAACATTATTGGATCTAGTGA
*
15951522 ATCCGAGTTGAACGTGAAAAACATTATTGGATCTAGTGA
1 ATCCGAGTTGAACATGAAAAACATTATTGGATCTAGTGA
15951561 CTCACAACTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (39 bp):
ATCCGAGTTGAACATGAAAAACATTATTGGATCTAGTGA
Found at i:15964110 original size:15 final size:16
Alignment explanation
Indices: 15964081--15964116 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
15964071 TAAAATATCT
15964081 TAAATAATCCTTTTTA
1 TAAATAATCCTTTTTA
15964097 TAAATAAT-CTTTTTA
1 TAAATAATCCTTTTTA
15964112 TAAAT
1 TAAAT
15964117 TAAAATAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.60
16 8 0.40
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (16 bp):
TAAATAATCCTTTTTA
Found at i:15972836 original size:163 final size:163
Alignment explanation
Indices: 15972566--15972889 Score: 621
Period size: 163 Copynumber: 2.0 Consensus size: 163
15972556 TGTACATATC
*
15972566 ATAGGCTCCTTTGTTGATAATTTTTTCTTAGCTATACAATCTTAGGTTTCCATTTATGGGTTATT
1 ATAGGCTCCCTTGTTGATAATTTTTTCTTAGCTATACAATCTTAGGTTTCCATTTATGGGTTATT
15972631 CTCTTGGTCTAGTGCACTTGTGGCCCATATATGAACTTAGTTAGGAATCATAAGTTGATCCCTTT
66 CTCTTGGTCTAGTGCACTTGTGGCCCATATATGAACTTAGTTAGGAATCATAAGTTGATCCCTTT
15972696 AGATCTTGAGCTTGAGGTTACTCGTAGGAGGTA
131 AGATCTTGAGCTTGAGGTTACTCGTAGGAGGTA
*
15972729 ATAGGCTCCCTTGTTGATAATTTTTTCTTAGCTATACAATCTTAGGTTTCCATTTATGGGTTGTT
1 ATAGGCTCCCTTGTTGATAATTTTTTCTTAGCTATACAATCTTAGGTTTCCATTTATGGGTTATT
*
15972794 CTCTTGGTCTAGTGCACTTGTGGCCCATATATGAACTTAGTTAGGAATCGTAAGTTGATCCCTTT
66 CTCTTGGTCTAGTGCACTTGTGGCCCATATATGAACTTAGTTAGGAATCATAAGTTGATCCCTTT
15972859 AGATCTTGAGCTTGAGGTTACTCGTAGGAGG
131 AGATCTTGAGCTTGAGGTTACTCGTAGGAGG
15972890 ATTAGAAAGG
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 158 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (163 bp):
ATAGGCTCCCTTGTTGATAATTTTTTCTTAGCTATACAATCTTAGGTTTCCATTTATGGGTTATT
CTCTTGGTCTAGTGCACTTGTGGCCCATATATGAACTTAGTTAGGAATCATAAGTTGATCCCTTT
AGATCTTGAGCTTGAGGTTACTCGTAGGAGGTA
Done.