Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167838.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_11, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23775123
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 69000 characters in sequence are not A, C, G, or T
File 90 of 129
Found at i:16119354 original size:20 final size:20
Alignment explanation
Indices: 16119331--16119381 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
16119321 ACCTCAATTG
16119331 TAAACCTTAAATCTTAAACC
1 TAAACCTTAAATCTTAAACC
* **
16119351 TAAACCTTAATTCTTATCCC
1 TAAACCTTAAATCTTAAACC
*
16119371 TAAACCCTAAA
1 TAAACCTTAAA
16119382 CTCAAAACCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.31
Consensus pattern (20 bp):
TAAACCTTAAATCTTAAACC
Found at i:16119437 original size:19 final size:20
Alignment explanation
Indices: 16119413--16119451 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
16119403 TGAATTAGCC
*
16119413 CCAAACC-TTAAACCAACCT
1 CCAAACCGTAAAACCAACCT
16119432 CCAAACCGTAAAACCAACCT
1 CCAAACCGTAAAACCAACCT
16119452 TTAACCCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.44, C:0.41, G:0.03, T:0.13
Consensus pattern (20 bp):
CCAAACCGTAAAACCAACCT
Found at i:16120513 original size:14 final size:14
Alignment explanation
Indices: 16120494--16120542 Score: 80
Period size: 14 Copynumber: 3.4 Consensus size: 14
16120484 TAGCTATCTA
16120494 ATTGTACTTTGCTT
1 ATTGTACTTTGCTT
16120508 ATTGTACTTTGCTT
1 ATTGTACTTTGCTT
16120522 ATTGTGTACTTTGCTT
1 A-T-TGTACTTTGCTT
16120538 ATTGT
1 ATTGT
16120543 TGGTTTTGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
14 18 0.55
15 2 0.06
16 13 0.39
ACGTcount: A:0.14, C:0.12, G:0.16, T:0.57
Consensus pattern (14 bp):
ATTGTACTTTGCTT
Found at i:16120531 original size:16 final size:16
Alignment explanation
Indices: 16120496--16120542 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
16120486 GCTATCTAAT
16120496 TGTACTTTGCTTA-T-
1 TGTACTTTGCTTATTG
16120510 TGTACTTTGCTTATTG
1 TGTACTTTGCTTATTG
16120526 TGTACTTTGCTTATTG
1 TGTACTTTGCTTATTG
16120542 T
1 T
16120543 TGGTTTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 13 0.42
15 1 0.03
16 17 0.55
ACGTcount: A:0.13, C:0.13, G:0.17, T:0.57
Consensus pattern (16 bp):
TGTACTTTGCTTATTG
Found at i:16121729 original size:20 final size:20
Alignment explanation
Indices: 16121692--16121741 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
16121682 AGTCAAACCT
* * *
16121692 AGTCAAACTTAGTCAAATAA
1 AGTCAAAATTAATAAAATAA
**
16121712 AGTCAAAATTAATAAAATTT
1 AGTCAAAATTAATAAAATAA
16121732 AGTCAAAATT
1 AGTCAAAATT
16121742 GATCAAATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.30
Consensus pattern (20 bp):
AGTCAAAATTAATAAAATAA
Found at i:16121749 original size:20 final size:20
Alignment explanation
Indices: 16121712--16121751 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
16121702 AGTCAAATAA
16121712 AGTCAAAATTAATAAAATTT
1 AGTCAAAATTAATAAAATTT
* *
16121732 AGTCAAAATTGATCAAATTT
1 AGTCAAAATTAATAAAATTT
16121752 TATAAAACGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (20 bp):
AGTCAAAATTAATAAAATTT
Found at i:16122411 original size:146 final size:146
Alignment explanation
Indices: 16122012--16122415 Score: 398
Period size: 145 Copynumber: 2.8 Consensus size: 146
16122002 ACACCATAAG
* * * *
16122012 AGGTATGAAATTACCAAAATA-CCCTTTAGGGGTATTTTCATAATTTGACCTTTCCAATGTCAGA
1 AGGTGTGAAATTACCAAAATACCCCTTTAGGGGTATTTTGATAATTTGACCTTTCCAAGGTCGGA
* ** * * *
16122076 ATTTTACGAAAA-GCTTCAGATCATGA-TTTTATAATATTTGATTATTTTTAGAAATTTAAAAAC
66 TTTTTAC-AAAATTTTTCAGATCTTGATTTTTATAATATTTGATGATTTTTAGAAATTCAAAAAC
* * *
16122139 CTTGATAGTACCTCGAA
130 ATAGACAGTACCTCGAA
* *
16122156 AGGTGTGAAATTACCAAAATACCCC-CTAGGGGTAATTTTG-TAATTTGACC-TTCCAAAGGTTG
1 AGGTGTGAAATTACCAAAATACCCCTTTAGGGGT-ATTTTGATAATTTGACCTTTCC-AAGGTCG
* **
16122218 G-TTTTT-CATGAAACTTTTT-AGGT-TGTGATTTTTATAATATTTGATGATTTTTAGTGCATTC
64 GATTTTTACA--AAA-TTTTTCAGATCT-TGATTTTTATAATATTTGATGATTTTTAG-AAATTC
* * * *
16122279 AGAATCATAG-CAGTATCTCGGA
124 AAAAACATAGACAGTACCTCGAA
* * *
16122301 TGGTGTGAAATTTCTAAAATACCCCTTTAGGGGTATTTTGATAATTTGACCTTTCCAAGGTCGGA
1 AGGTGTGAAATTACCAAAATACCCCTTTAGGGGTATTTTGATAATTTGACCTTTCCAAGGTCGGA
* * * *
16122366 TTTTTACAAAATTTTTCATATCTTAATTTTTATAATATCTCATGATTTTT
66 TTTTTACAAAATTTTTCAGATCTTGATTTTTATAATATTTGATGATTTTT
16122416 GATGCTTTAA
Statistics
Matches: 211, Mismatches: 32, Indels: 32
0.77 0.12 0.12
Matches are distributed among these distances:
141 1 0.00
142 1 0.00
143 11 0.05
144 48 0.23
145 76 0.36
146 62 0.29
147 10 0.05
148 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (146 bp):
AGGTGTGAAATTACCAAAATACCCCTTTAGGGGTATTTTGATAATTTGACCTTTCCAAGGTCGGA
TTTTTACAAAATTTTTCAGATCTTGATTTTTATAATATTTGATGATTTTTAGAAATTCAAAAACA
TAGACAGTACCTCGAA
Found at i:16124126 original size:13 final size:14
Alignment explanation
Indices: 16124108--16124142 Score: 63
Period size: 13 Copynumber: 2.6 Consensus size: 14
16124098 TTTTATTTCA
16124108 AAAAAAAGAAAAG-
1 AAAAAAAGAAAAGT
16124121 AAAAAAAGAAAAGT
1 AAAAAAAGAAAAGT
16124135 AAAAAAAG
1 AAAAAAAG
16124143 GAGTTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 13 0.62
14 8 0.38
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (14 bp):
AAAAAAAGAAAAGT
Found at i:16125684 original size:19 final size:20
Alignment explanation
Indices: 16125664--16125701 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
16125654 AATCTAGAAA
*
16125664 TTTTCTAGATTTCGATGAAT
1 TTTTCCAGATTTCGATGAAT
*
16125684 TTTTCCATATTTCGATGA
1 TTTTCCAGATTTCGATGA
16125702 TGATTCCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (20 bp):
TTTTCCAGATTTCGATGAAT
Found at i:16132532 original size:188 final size:188
Alignment explanation
Indices: 16132215--16132777 Score: 1108
Period size: 188 Copynumber: 3.0 Consensus size: 188
16132205 AGGCAGGTTT
16132215 TAACAAATGCTGAAGTGTCTATGACTAACTAGCCATCAAAATTGTTTCCAAAACCGATAACAATT
1 TAACAAATGCTGAAGTGTCTATGACTAACTAGCCATCAAAATTGTTTCCAAAACCGATAACAATT
16132280 TACTATAGAGATAAACCAAAGTCGATCATAGACAAGCTTATCCCTAGGTTGGTAACTTTTAAAGT
66 TACTATAGAGATAAACCAAAGTCGATCATAGACAAGCTTATCCCTAGGTTGGTAACTTTTAAAGT
16132345 CCCTACTCTATTCCCTTACAAGGATGATAAAGATGTGCCATGAAAATATGGCTATGAC
131 CCCTACTCTATTCCCTTACAAGGATGATAAAGATGTGCCATGAAAATATGGCTATGAC
*
16132403 TAACAAATGCTGAAGTGTCTATGACTAACTAGCCATCAAAATTGTTTCCAAAATCGATAACAATT
1 TAACAAATGCTGAAGTGTCTATGACTAACTAGCCATCAAAATTGTTTCCAAAACCGATAACAATT
16132468 TACTATAGAGATAAACCAAAGTCGATCATAGACAAGCTTATCCCTAGGTTGGTAACTTTTAAAGT
66 TACTATAGAGATAAACCAAAGTCGATCATAGACAAGCTTATCCCTAGGTTGGTAACTTTTAAAGT
16132533 CCCTACTCTATTCCCTTACAAGGATGATAAAGATGTGCCATGAAAATATGGCTATGAC
131 CCCTACTCTATTCCCTTACAAGGATGATAAAGATGTGCCATGAAAATATGGCTATGAC
16132591 TAACAAATGCTGAAGTGTCTATGACTAACTAGCCATCAAAATTGTTTCCAAAACCGATAACAATT
1 TAACAAATGCTGAAGTGTCTATGACTAACTAGCCATCAAAATTGTTTCCAAAACCGATAACAATT
16132656 TACTATAGAGATAAACCAAAGTCGATCATAGACAAGCTTATCCCTAGGTTGGTAACTTTTAAAGT
66 TACTATAGAGATAAACCAAAGTCGATCATAGACAAGCTTATCCCTAGGTTGGTAACTTTTAAAGT
*
16132721 CCCTACTCTATTCGCTTACAAGGATGATAAAGATGTGCCATGAAAATATGGCTATGA
131 CCCTACTCTATTCCCTTACAAGGATGATAAAGATGTGCCATGAAAATATGGCTATGA
16132778 ATTGGTCAAT
Statistics
Matches: 372, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 372 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (188 bp):
TAACAAATGCTGAAGTGTCTATGACTAACTAGCCATCAAAATTGTTTCCAAAACCGATAACAATT
TACTATAGAGATAAACCAAAGTCGATCATAGACAAGCTTATCCCTAGGTTGGTAACTTTTAAAGT
CCCTACTCTATTCCCTTACAAGGATGATAAAGATGTGCCATGAAAATATGGCTATGAC
Found at i:16136913 original size:9 final size:10
Alignment explanation
Indices: 16136890--16136915 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
16136880 ACTAGCTTAA
16136890 AAAAAAGAAT
1 AAAAAAGAAT
16136900 AAAAAAGAAT
1 AAAAAAGAAT
16136910 AAAAAA
1 AAAAAA
16136916 TGAGAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAAGAAT
Found at i:16138151 original size:48 final size:47
Alignment explanation
Indices: 16137953--16138222 Score: 169
Period size: 44 Copynumber: 6.0 Consensus size: 47
16137943 GTCTTATTTA
* * * *
16137953 TTTCTTAAAGTTTTTGAGCCTCTGTTTAGAGGAGCTTTATTTA----T
1 TTTC-TAAAGTTGTTGAGCCTCTATTTAAATGAGCTTTATTTATTTTT
* * * *
16137997 TTT-TAAAGTTGTTGAGTCTTTGTTTAGAA-GAGCCTTATTTA---TT
1 TTTCTAAAGTTGTTGAGCCTCTATTTA-AATGAGCTTTATTTATTTTT
* * * * * * *
16138040 TCTC-AAAGTTGTTAAGACTTTGTTTATAA-GAGCCTTATCTA--TTT
1 TTTCTAAAGTTGTTGAGCCTCTATTTA-AATGAGCTTTATTTATTTTT
* * * *
16138084 TTCCTAAAGTTGGTAAGCCTCTATTTAAATGAGCCTTATTTATTTTT
1 TTTCTAAAGTTGTTGAGCCTCTATTTAAATGAGCTTTATTTATTTTT
* *
16138131 TTTTTCAAAGTTGTTGAGCCTCTATTTAGATGAGCTTTATTTA---TT
1 TTTCT-AAAGTTGTTGAGCCTCTATTTAAATGAGCTTTATTTATTTTT
* *
16138176 TTTCTAAAGTTATTGAGCCTCTAATTAGAA-GAGCTTTATTTATTTTT
1 TTTCTAAAGTTGTTGAGCCTCTATTTA-AATGAGCTTTATTTATTTTT
16138223 CAAAGTCATT
Statistics
Matches: 186, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
42 31 0.17
43 37 0.20
44 41 0.22
45 36 0.19
47 8 0.04
48 33 0.18
ACGTcount: A:0.24, C:0.11, G:0.15, T:0.49
Consensus pattern (47 bp):
TTTCTAAAGTTGTTGAGCCTCTATTTAAATGAGCTTTATTTATTTTT
Found at i:16138303 original size:178 final size:177
Alignment explanation
Indices: 16137946--16138308 Score: 401
Period size: 180 Copynumber: 2.0 Consensus size: 177
16137936 TAGAGGAGTC
* * * *
16137946 TTATTTATTTCTTAAAGTTTTTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTAAAGTTGTTG
1 TTATTTTTTTCTTAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTTAAAGTTATTG
* * ** ** *
16138011 AGTCTTTGTTTAGAAGAGCCTTATTTATTTCTCAAAGTTGTTAAGACTTTGTTTATAAGAGCCTT
66 AGCCTCTAATTAGAAGAGCCTTATTTATTTCTCAAAGTCATTAAGACTTTGCTTATAAGAGCCTT
* * * *
16138076 ATCTATTTTTCCTAAAGTTGGTAAGCCTCTATTTAAATGAGCCTTAT
131 ATCTATTTATCCAAAAGTTCGTAAGCCTCTATTTAAAGGAGCCTTAT
* *
16138123 TTATTTTTTTTTTCAAAGTTGTTGAGCCTCTATTTAGATGAGCTTTATTTATTTTTCTAAAGTTA
1 TTATTTTTTTCTT-AAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTA-TTTT-TAAAGTTA
* * * *
16138188 TTGAGCCTCTAATTAGAAGAGCTTTATTTATTTTTCAAAGTCATTGAGCCTTTGCTTA-AAGAAG
63 TTGAGCCTCTAATTAGAAGAGCCTTATTTATTTCTCAAAGTCATTAAGACTTTGCTTATAAG-AG
* * * * ** *
16138252 CTTTATGC-ATTTAT-CAAAAG-TCGTGAGCTTCTGTTTAGGGGAGCTTTAT
127 CCTTAT-CTATTTATCCAAAAGTTCGTAAGCCTCTATTTAAAGGAGCCTTAT
16138301 TTATTTTT
1 TTATTTTT
16138309 CAAAGTCATA
Statistics
Matches: 153, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
177 11 0.07
178 63 0.41
179 12 0.08
180 66 0.43
181 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.16, T:0.47
Consensus pattern (177 bp):
TTATTTTTTTCTTAAAGTTGTTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTTAAAGTTATTG
AGCCTCTAATTAGAAGAGCCTTATTTATTTCTCAAAGTCATTAAGACTTTGCTTATAAGAGCCTT
ATCTATTTATCCAAAAGTTCGTAAGCCTCTATTTAAAGGAGCCTTAT
Found at i:16138353 original size:43 final size:43
Alignment explanation
Indices: 16137936--16138355 Score: 283
Period size: 43 Copynumber: 9.6 Consensus size: 43
16137926 GAAATGATTA
** *
16137936 TAGAGGAG-TCTTATTTATTTCTT-AAAGTTTTTGAGCCTCTGTT
1 TAGAGGAGCT-TTATTTATTT-TTCAAAGTCGTTGAGCCTTTGTT
* *
16137979 TAGAGGAGCTTTATTTATTTTT-AAAGTTGTTGAGTCTTTGTT
1 TAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTTTGTT
* * * * * *
16138021 TAGAAGAGCCTTATTTATTTCTCAAAGTTGTTAAGACTTTGTT
1 TAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTTTGTT
* * * * * * * * *
16138064 TATAAGAGCCTTATCTATTTTTCCTAAAGTTGGTAAGCCTCTATT
1 TAGAGGAGCTTTATTTATTTTT-C-AAAGTCGTTGAGCCTTTGTT
* * * * * *
16138109 TAAATGAGCCTTATTTATTTTTTTTTTCAAAGTTGTTGAGCCTCTATT
1 TAGAGGAG-C---TTTA-TTTATTTTTCAAAGTCGTTGAGCCTTTGTT
* ** * **
16138157 TAGATGAGCTTTATTTATTTTTCTAAAGTTATTGAGCCTCTAAT
1 TAGAGGAGCTTTATTTATTTTTC-AAAGTCGTTGAGCCTTTGTT
* * *
16138201 TAGAAGAGCTTTATTTATTTTTCAAAGTCATTGAGCCTTTGCT
1 TAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTTTGTT
* * ** *
16138244 TAAAGAAGCTTTATGCATTTATCAAAAGTCG-TGAG-CTTCTGTT
1 TAGAGGAGCTTTATTTATTTTTC-AAAGTCGTTGAGCCTT-TGTT
* * **
16138287 TAGGGGAGCTTTATTTATTTTTCAAAGTCATAAAGCCTTTGTT
1 TAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTTTGTT
* *
16138330 TAGAGGAGCCTTATTTATGTTTCAAA
1 TAGAGGAGCTTTATTTATTTTTCAAA
16138356 AGTCATTAAG
Statistics
Matches: 312, Mismatches: 51, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
42 47 0.15
43 150 0.48
44 55 0.18
45 22 0.07
46 1 0.00
47 1 0.00
48 25 0.08
49 4 0.01
50 7 0.02
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (43 bp):
TAGAGGAGCTTTATTTATTTTTCAAAGTCGTTGAGCCTTTGTT
Found at i:16139295 original size:5 final size:5
Alignment explanation
Indices: 16139287--16139322 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
16139277 CCATTTCTGT
16139287 TTTTA TTTTA TTTTA TTTTA -TTTA -TTTA -TTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
16139323 CTTTATGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 12 0.40
5 18 0.60
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:16139316 original size:8 final size:9
Alignment explanation
Indices: 16139288--16139328 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
16139278 CATTTCTGTT
16139288 TTTATTTTA
1 TTTATTTTA
16139297 TTTTATTTTA
1 -TTTATTTTA
16139307 TTTA-TTTA
1 TTTATTTTA
*
16139315 TTTATTTTC
1 TTTATTTTA
16139324 TTTAT
1 TTTAT
16139329 GTATTTGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 8 0.28
9 12 0.41
10 9 0.31
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTATTTTA
Found at i:16139316 original size:13 final size:13
Alignment explanation
Indices: 16139288--16139334 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
16139278 CATTTCTGTT
16139288 TTTATTTTATTTTA
1 TTTATTTTA-TTTA
16139302 TTT-TATTTATTTA
1 TTTAT-TTTATTTA
*
16139315 TTTATTTTCTTTA
1 TTTATTTTATTTA
*
16139328 TGTATTT
1 TTTATTT
16139335 GTTTTAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 21 0.72
14 8 0.28
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:16140055 original size:48 final size:47
Alignment explanation
Indices: 16139974--16140071 Score: 142
Period size: 48 Copynumber: 2.1 Consensus size: 47
16139964 ATAAAAAAAC
* *
16139974 AAAAAAAATTTTTTAAATAGACCTAAATGGTGAAAAATTTAGAAATA
1 AAAAAAAATTTTCTAAATAGACCGAAATGGTGAAAAATTTAGAAATA
* * *
16140021 AAAAATAAATTTTCTAAATTGCCCGAAATTGTGAAAAATTTAGAAATA
1 AAAAA-AAATTTTCTAAATAGACCGAAATGGTGAAAAATTTAGAAATA
16140069 AAA
1 AAA
16140072 CTTGTAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
47 5 0.11
48 40 0.89
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.30
Consensus pattern (47 bp):
AAAAAAAATTTTCTAAATAGACCGAAATGGTGAAAAATTTAGAAATA
Found at i:16140600 original size:23 final size:23
Alignment explanation
Indices: 16140570--16140613 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
16140560 GGCCAATCAT
16140570 ACCTTAATAAAAATTTGGTTGCG
1 ACCTTAATAAAAATTTGGTTGCG
*
16140593 ACCTTAATACAAATTTGGTTG
1 ACCTTAATAAAAATTTGGTTG
16140614 TGACTCCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (23 bp):
ACCTTAATAAAAATTTGGTTGCG
Found at i:16142252 original size:18 final size:18
Alignment explanation
Indices: 16142229--16142268 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
16142219 GAGAACAAGG
*
16142229 ATATAACCATCAATATCA
1 ATATAACCATCAATAGCA
*
16142247 ATATAACTATCAATAGCA
1 ATATAACCATCAATAGCA
16142265 ATAT
1 ATAT
16142269 CATCAAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (18 bp):
ATATAACCATCAATAGCA
Found at i:16150872 original size:13 final size:13
Alignment explanation
Indices: 16150854--16150927 Score: 71
Period size: 13 Copynumber: 5.7 Consensus size: 13
16150844 TAGGATTTCA
**
16150854 TTTAAGGTTTCGT
1 TTTAAGGTTTAAT
* *
16150867 TTTAAGGTTTTAG
1 TTTAAGGTTTAAT
*
16150880 TTTAAGGTTTCAT
1 TTTAAGGTTTAAT
16150893 TTT-AGCGCTTT-AT
1 TTTAAG-G-TTTAAT
16150906 TTTAAGGTTTAAT
1 TTTAAGGTTTAAT
16150919 TTTAAGGTT
1 TTTAAGGTT
16150928 CACATTAGGG
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
12 5 0.10
13 42 0.81
14 5 0.10
ACGTcount: A:0.22, C:0.05, G:0.19, T:0.54
Consensus pattern (13 bp):
TTTAAGGTTTAAT
Found at i:16150884 original size:26 final size:26
Alignment explanation
Indices: 16150854--16150927 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
16150844 TAGGATTTCA
*
16150854 TTTAAGGTTTCGTTTTAAGGTTTTAG
1 TTTAAGGTTTCATTTTAAGGTTTTAG
* *
16150880 TTTAAGGTTTCATTTT-AGCGCTTTAT
1 TTTAAGGTTTCATTTTAAG-GTTTTAG
*
16150906 TTTAAGGTTTAATTTTAAGGTT
1 TTTAAGGTTTCATTTTAAGGTT
16150928 CACATTAGGG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 37 0.90
27 2 0.05
ACGTcount: A:0.22, C:0.05, G:0.19, T:0.54
Consensus pattern (26 bp):
TTTAAGGTTTCATTTTAAGGTTTTAG
Found at i:16153765 original size:30 final size:29
Alignment explanation
Indices: 16153726--16153828 Score: 73
Period size: 30 Copynumber: 3.4 Consensus size: 29
16153716 CTAGGTTTAT
*
16153726 GTGCTAGCTAATACTAGGCTTAAAACTTAG
1 GTGCCAGCTAATA-TAGGCTTAAAACTTAG
* * **
16153756 GTGCCAGCTAAT-TTGAACTTAAATTTTCATTG
1 GTGCCAGCTAATATAG-GCTTAAAACTT-A--G
* *
16153788 GTGCTAGCTAATATTGGGCTTAAAACTTAG
1 GTGCCAGCTAATA-TAGGCTTAAAACTTAG
*
16153818 GTACCAGCTAA
1 GTGCCAGCTAA
16153829 ATTGGACTTA
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
28 2 0.04
29 8 0.15
30 22 0.40
32 13 0.24
33 8 0.15
34 2 0.04
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (29 bp):
GTGCCAGCTAATATAGGCTTAAAACTTAG
Found at i:16153825 original size:62 final size:62
Alignment explanation
Indices: 16153726--16153844 Score: 193
Period size: 62 Copynumber: 1.9 Consensus size: 62
16153716 CTAGGTTTAT
* *
16153726 GTGCTAGCTAATACTAGGCTTAAAACTTAGGTGCCAGCTAATTTGAACTTAAATTTTCATTG
1 GTGCTAGCTAATACTAGGCTTAAAACTTAGGTACCAGCTAAATTGAACTTAAATTTTCATTG
* * *
16153788 GTGCTAGCTAATATTGGGCTTAAAACTTAGGTACCAGCTAAATTGGACTTAAATTTT
1 GTGCTAGCTAATACTAGGCTTAAAACTTAGGTACCAGCTAAATTGAACTTAAATTTT
16153845 TATTAATACC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 52 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.35
Consensus pattern (62 bp):
GTGCTAGCTAATACTAGGCTTAAAACTTAGGTACCAGCTAAATTGAACTTAAATTTTCATTG
Found at i:16153838 original size:29 final size:29
Alignment explanation
Indices: 16153744--16153840 Score: 95
Period size: 29 Copynumber: 3.2 Consensus size: 29
16153734 TAATACTAGG
* *
16153744 CTTAAAACTTAGGTGCCAGCTAATTTGAA
1 CTTAAAACTTAGGTGCCAGCTAAATTGGA
** * *
16153773 CTTAAATTTTCATTGGTGCTAGCTAATATTGGG
1 CTTAAAACTT-A--GGTGCCAGCTAA-ATTGGA
*
16153806 CTTAAAACTTAGGTACCAGCTAAATTGGA
1 CTTAAAACTTAGGTGCCAGCTAAATTGGA
16153835 CTTAAA
1 CTTAAA
16153841 TTTTTATTAA
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
29 19 0.36
30 11 0.21
32 12 0.23
33 11 0.21
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (29 bp):
CTTAAAACTTAGGTGCCAGCTAAATTGGA
Found at i:16153861 original size:32 final size:33
Alignment explanation
Indices: 16153819--16153905 Score: 88
Period size: 32 Copynumber: 2.7 Consensus size: 33
16153809 AAAACTTAGG
* *
16153819 TACCAGCTAAATTGGACTTAAAT-TTTTATTAA
1 TACCAACTAAATTGGACTTAAATCTTTCATTAA
** *
16153851 TACCAACTAAATTAAACTTAAATCTTTCATTGA
1 TACCAACTAAATTGGACTTAAATCTTTCATTAA
* *
16153884 TGCCAAC-AATATTGGGCTTAAA
1 TACCAACTAA-ATTGGACTTAAA
16153906 ACCTAGATGC
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
32 22 0.50
33 22 0.50
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (33 bp):
TACCAACTAAATTGGACTTAAATCTTTCATTAA
Found at i:16153966 original size:94 final size:94
Alignment explanation
Indices: 16153771--16153959 Score: 213
Period size: 94 Copynumber: 2.0 Consensus size: 94
16153761 AGCTAATTTG
* * * * * **
16153771 AACTTAAATTTTCATTGGTGCTAGCTAATATTGGGCTTAAAACTTAGGTACCAGCTAAATTGGAC
1 AACTTAAATTTTCATTGATGCCAACTAATATTGGGCTTAAAACCTAGATACCAGCTAAATAAGAC
* *
16153836 TTAAATTTTTATTAATACCAACTAAATTA
66 TTAAATTTTCATTAATACCAACTAAACTA
*
16153865 AACTTAAATCTTTCATTGATGCCAAC-AATATTGGGCTTAAAACCTAGATGCCAGCTAAACTAAG
1 AACTTAAAT-TTTCATTGATGCCAACTAATATTGGGCTTAAAACCTAGATACCAGCTAAA-TAAG
* * *
16153929 -CTT-AATTTTCATTGATGCCAGCTAATACTA
64 ACTTAAATTTTCATTAATACCAACTAA-ACTA
16153959 A
1 A
16153960 GGTTAAAACC
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
93 18 0.23
94 46 0.58
95 15 0.19
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (94 bp):
AACTTAAATTTTCATTGATGCCAACTAATATTGGGCTTAAAACCTAGATACCAGCTAAATAAGAC
TTAAATTTTCATTAATACCAACTAAACTA
Found at i:16154080 original size:33 final size:33
Alignment explanation
Indices: 16154043--16154130 Score: 97
Period size: 33 Copynumber: 2.6 Consensus size: 33
16154033 CATTACTGCT
*
16154043 AGCTAAAGTGGGCTTAAATTTTCACAAGG-TGCC
1 AGCTAAACTGGGCTTAAATTTTCA-AAGGATGCC
* * * **
16154076 AGCTAAATTGGACTTAAATCTTCATTGGATGCC
1 AGCTAAACTGGGCTTAAATTTTCAAAGGATGCC
16154109 AGCTAATACTGGGCTTAAATTT
1 AGCTAA-ACTGGGCTTAAATTT
16154131 GGGTGTCAGA
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
32 2 0.04
33 31 0.69
34 12 0.27
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (33 bp):
AGCTAAACTGGGCTTAAATTTTCAAAGGATGCC
Found at i:16154432 original size:32 final size:33
Alignment explanation
Indices: 16154395--16154545 Score: 114
Period size: 32 Copynumber: 4.6 Consensus size: 33
16154385 AAAAAATTGA
* *
16154395 GCTTAAACTTTCATTGGATGCCAAC-AAACTGG
1 GCTTAAATTTTCATTGAATGCCAACTAAACTGG
* * *
16154427 GCTTAAATTTTCA-TCAAGTGCCAAATAATCTGG
1 GCTTAAATTTTCATTGAA-TGCCAACTAAACTGG
* * **
16154460 GTTTAAATTTTTATTGAATGCCAACTAAACTAA
1 GCTTAAATTTTCATTGAATGCCAACTAAACTGG
* * *
16154493 G-TGTAAA-TTGCATTGGATGCCAACTAAATTGG
1 GCT-TAAATTTTCATTGAATGCCAACTAAACTGG
*
16154525 GCTTTTAAA-TCTCATTGAATG
1 GC--TTAAATTTTCATTGAATG
16154546 ATAGATAATT
Statistics
Matches: 91, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
31 2 0.02
32 39 0.43
33 33 0.36
34 16 0.18
35 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (33 bp):
GCTTAAATTTTCATTGAATGCCAACTAAACTGG
Found at i:16154482 original size:33 final size:32
Alignment explanation
Indices: 16154395--16154490 Score: 97
Period size: 33 Copynumber: 2.9 Consensus size: 32
16154385 AAAAAATTGA
* *
16154395 GCTTAAACTTTCATTGGATGCCAACAAACTGG
1 GCTTAAATTTTCATTGAATGCCAACAAACTGG
*
16154427 GCTTAAATTTTCA-TCAAGTGCCAA-ATAATCTGG
1 GCTTAAATTTTCATTGAA-TGCCAACA-AA-CTGG
* *
16154460 GTTTAAATTTTTATTGAATGCCAACTAAACT
1 GCTTAAATTTTCATTGAATGCCAAC-AAACT
16154491 AAGTGTAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
31 3 0.06
32 20 0.38
33 23 0.44
34 5 0.10
35 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (32 bp):
GCTTAAATTTTCATTGAATGCCAACAAACTGG
Found at i:16155485 original size:26 final size:25
Alignment explanation
Indices: 16155442--16155508 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
16155432 ATTTTTTTTC
* *
16155442 TTTTTTTTTCTTCCTTTCCTTT-GTTCT
1 TTTTTTTTTCTT--TTTTCTTTCATT-T
16155469 TTTTTTTTTCTTTTTTCTTTCATTT
1 TTTTTTTTTCTTTTTTCTTTCATTT
16155494 TTTTTCTTTTCTTTT
1 TTTTT-TTTTCTTTT
16155509 CCTTTTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
25 13 0.36
26 11 0.31
27 12 0.33
ACGTcount: A:0.01, C:0.16, G:0.01, T:0.81
Consensus pattern (25 bp):
TTTTTTTTTCTTTTTTCTTTCATTT
Found at i:16155509 original size:20 final size:21
Alignment explanation
Indices: 16155470--16155515 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
16155460 CTTTGTTCTT
*
16155470 TTTTTTTTCTTTTTTCTTTCA
1 TTTTTTTTCTTTTCTCTTTCA
*
16155491 TTTTTTTTCTTTTCT-TTTCC
1 TTTTTTTTCTTTTCTCTTTCA
16155511 TTTTT
1 TTTTT
16155516 CATTATTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTTTTTTCTTTTCTCTTTCA
Found at i:16155519 original size:27 final size:25
Alignment explanation
Indices: 16155436--16155516 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 25
16155426 CTATGCATTT
* *
16155436 TTTTTCTTTTTTTTTCTTCCTTTCC
1 TTTTTCTTTTTTTTTTTTCTTTTCC
16155461 TTTGTTC--TTTTTTTTTTCTTTT--
1 TTT-TTCTTTTTTTTTTTTCTTTTCC
16155483 TTCTTTCATTTTTTTTCTTTTCTTTTCC
1 TT-TTTC-TTTTTTTT-TTTTCTTTTCC
16155511 TTTTTC
1 TTTTTC
16155517 ATTATTTCAC
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
22 5 0.11
23 1 0.02
24 13 0.28
25 9 0.20
26 12 0.26
27 4 0.09
28 2 0.04
ACGTcount: A:0.01, C:0.19, G:0.01, T:0.79
Consensus pattern (25 bp):
TTTTTCTTTTTTTTTTTTCTTTTCC
Found at i:16155529 original size:27 final size:28
Alignment explanation
Indices: 16155473--16155538 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 28
16155463 TGTTCTTTTT
* **
16155473 TTTTTCTTTT-TTCTTTCATTTTTTTTC
1 TTTTTCTTTTCTTCTTTCATTATTTCAC
16155500 -TTTTCTTTTCCTT-TTTCATTATTTCAC
1 TTTTTCTTTT-CTTCTTTCATTATTTCAC
16155527 TTTTTCTTTTCT
1 TTTTTCTTTTCT
16155539 CTAAATGGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
26 9 0.27
27 13 0.39
28 11 0.33
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (28 bp):
TTTTTCTTTTCTTCTTTCATTATTTCAC
Found at i:16155899 original size:14 final size:13
Alignment explanation
Indices: 16155880--16155923 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
16155870 TTTTCTTGGC
16155880 TTTTGGATTTTTCT
1 TTTTGG-TTTTTCT
*
16155894 TTTTGGGTTTTTGGT
1 TTTT-GGTTTTT-CT
16155909 TTTTGGTTTTTCT
1 TTTTGGTTTTTCT
16155922 TT
1 TT
16155924 GTTTCTTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.12
14 16 0.62
15 7 0.27
ACGTcount: A:0.02, C:0.05, G:0.20, T:0.73
Consensus pattern (13 bp):
TTTTGGTTTTTCT
Found at i:16156040 original size:24 final size:24
Alignment explanation
Indices: 16156013--16156064 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
16156003 ATTTTTCCAT
16156013 TTTTCCCTTTTTTT-TTATCCTTTC
1 TTTT-CCTTTTTTTCTTATCCTTTC
* * *
16156037 TTTTTCTTTTTTTCTTTTTCTTTC
1 TTTTCCTTTTTTTCTTATCCTTTC
16156061 TTTT
1 TTTT
16156065 TTTTTTGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.33
24 16 0.67
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTCCTTTTTTTCTTATCCTTTC
Found at i:16156041 original size:18 final size:19
Alignment explanation
Indices: 16156020--16156067 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
16156010 CATTTTTCCC
16156020 TTTTTTTTTATC-CTTTCT
1 TTTTTTTTTATCTCTTTCT
* *
16156038 TTTTCTTTTTTTCTTTTTCT
1 TTTT-TTTTTATCTCTTTCT
16156058 TTCTTTTTTT
1 TT-TTTTTTT
16156068 TTTGTTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 4 0.16
19 7 0.28
20 12 0.48
21 2 0.08
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (19 bp):
TTTTTTTTTATCTCTTTCT
Found at i:16156050 original size:14 final size:15
Alignment explanation
Indices: 16156033--16156069 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
16156023 TTTTTTATCC
16156033 TTTCTTTTTCTTT-T
1 TTTCTTTTTCTTTCT
16156047 TTTCTTTTTCTTTCT
1 TTTCTTTTTCTTTCT
16156062 TTT-TTTTT
1 TTTCTTTTT
16156070 TGTTTGTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTCTTTTTCTTTCT
Found at i:16156079 original size:24 final size:24
Alignment explanation
Indices: 16156019--16156070 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
16156009 CCATTTTTCC
* *
16156019 CTTTTTTT-TTATCCTTTCTTTTT
1 CTTTTTTTCTTTTTCTTTCTTTTT
16156042 CTTTTTTTCTTTTTCTTTCTTTTT
1 CTTTTTTTCTTTTTCTTTCTTTTT
16156066 -TTTTT
1 CTTTTT
16156071 GTTTGTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 13 0.50
24 13 0.50
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (24 bp):
CTTTTTTTCTTTTTCTTTCTTTTT
Found at i:16158517 original size:12 final size:12
Alignment explanation
Indices: 16158490--16158530 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
16158480 TAAATGGACG
**
16158490 AATGAATACATG
1 AATGAATACACA
16158502 AATGAATACACA
1 AATGAATACACA
*
16158514 AATGAATGCACA
1 AATGAATACACA
16158526 AATGA
1 AATGA
16158531 CCAAGCTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.20
Consensus pattern (12 bp):
AATGAATACACA
Found at i:16160263 original size:21 final size:23
Alignment explanation
Indices: 16160229--16160270 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
16160219 AAATACTATA
16160229 TAAATAAAAGAAATAA-AAAATC
1 TAAATAAAAGAAATAATAAAATC
*
16160251 TAAA-AAAATAAATAATAAAA
1 TAAATAAAAGAAATAATAAAA
16160271 ATAACAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (23 bp):
TAAATAAAAGAAATAATAAAATC
Found at i:16161772 original size:17 final size:18
Alignment explanation
Indices: 16161732--16161773 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
16161722 AAAACTTTGA
*
16161732 ATTTTCGAATGGTCTTAAG
1 ATTTT-GAATGGTATTAAG
*
16161751 GTTTTGAATGG-ATTAAG
1 ATTTTGAATGGTATTAAG
16161768 ATTTTG
1 ATTTTG
16161774 GACTTCACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 10 0.50
18 6 0.30
19 4 0.20
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (18 bp):
ATTTTGAATGGTATTAAG
Found at i:16164087 original size:21 final size:20
Alignment explanation
Indices: 16164050--16164092 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
16164040 TGAATTTTTA
*
16164050 GAAAAAGAAAATTATGATTT
1 GAAAAAGAAAATTATGAATT
*
16164070 GAAAAAGAAATTTGATGAATT
1 GAAAAAGAAAATT-ATGAATT
16164091 GA
1 GA
16164093 TGAATGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (20 bp):
GAAAAAGAAAATTATGAATT
Found at i:16169456 original size:13 final size:13
Alignment explanation
Indices: 16169425--16169498 Score: 51
Period size: 13 Copynumber: 5.8 Consensus size: 13
16169415 TAGGATTTCA
* *
16169425 TTTAAGGTTTCAG
1 TTTAGGGTTTAAG
* *
16169438 TCTAGGGTTTTAG
1 TTTAGGGTTTAAG
* *
16169451 TTTA-GGATTAAT
1 TTTAGGGTTTAAG
* *
16169463 TTTATGGTTTTAG
1 TTTAGGGTTTAAG
* *
16169476 TTTAGGGATTAAT
1 TTTAGGGTTTAAG
16169489 TTTAGGGTTT
1 TTTAGGGTTT
16169499 CACATTAAGG
Statistics
Matches: 45, Mismatches: 15, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
12 9 0.20
13 36 0.80
ACGTcount: A:0.22, C:0.03, G:0.24, T:0.51
Consensus pattern (13 bp):
TTTAGGGTTTAAG
Found at i:16169458 original size:38 final size:39
Alignment explanation
Indices: 16169415--16169512 Score: 92
Period size: 38 Copynumber: 2.6 Consensus size: 39
16169405 GATTTTTACC
* *
16169415 TAGGATTTCA-TTTAAGGTTTCAGTCTAGGGTTTTAGTT
1 TAGGATTTCACTTTAAGGTTTCAGTCTAGGGATTAAGTT
* * * * * *
16169453 TAGGA-TTAATTTTATGGTTTTAGTTTAGGGATTAATTT
1 TAGGATTTCACTTTAAGGTTTCAGTCTAGGGATTAAGTT
* *
16169491 TAGGGTTTCACATTAAGGTTTC
1 TAGGATTTCACTTTAAGGTTTC
16169513 GGGTATTCAC
Statistics
Matches: 45, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
37 3 0.07
38 31 0.69
39 11 0.24
ACGTcount: A:0.23, C:0.06, G:0.22, T:0.48
Consensus pattern (39 bp):
TAGGATTTCACTTTAAGGTTTCAGTCTAGGGATTAAGTT
Found at i:16169471 original size:25 final size:26
Alignment explanation
Indices: 16169440--16169498 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
16169430 GGTTTCAGTC
16169440 TAGGGTTTTAGTTTA-GGATTAATTT
1 TAGGGTTTTAGTTTAGGGATTAATTT
*
16169465 TATGGTTTTAGTTTAGGGATTAATTT
1 TAGGGTTTTAGTTTAGGGATTAATTT
16169491 TAGGGTTT
1 TAGGGTTT
16169499 CACATTAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 14 0.45
26 17 0.55
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (26 bp):
TAGGGTTTTAGTTTAGGGATTAATTT
Found at i:16171800 original size:22 final size:20
Alignment explanation
Indices: 16171776--16171814 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
16171766 GTTTTGTTTT
*
16171776 TTTTTTTTATTTATATATTTA
1 TTTTTTGTATTT-TATATTTA
16171797 TTTTTTGTATTTTATATT
1 TTTTTTGTATTTTATATT
16171815 ATTACTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTTTTGTATTTTATATTTA
Found at i:16171823 original size:26 final size:25
Alignment explanation
Indices: 16171772--16171823 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
16171762 TGTTGTTTTG
* *
16171772 TTTTTTTTTTTTATTTATATATTTA
1 TTTTTTTATTTTATTTATATACTTA
16171797 TTTTTTGTATTTTATATTAT-TACTTA
1 TTTTTT-TATTTTAT-TTATATACTTA
16171823 T
1 T
16171824 ATTATTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 6 0.26
26 13 0.57
27 4 0.17
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (25 bp):
TTTTTTTATTTTATTTATATACTTA
Found at i:16171851 original size:34 final size:33
Alignment explanation
Indices: 16171765--16171851 Score: 83
Period size: 34 Copynumber: 2.6 Consensus size: 33
16171755 AGCTTTTTGT
*
16171765 TGTTTTGTTTTTT-TTTT-TTATTTATATATTTA
1 TGTTTT-TTTTTTATTTTATTACTTATATATTTA
*
16171797 T-TTTTTGTATTTTATATTATTACTTATAT-TATTA
1 TGTTTTT-T-TTTTATTTTATTACTTATATAT-TTA
16171831 TGTTTTTTTTTTACTTTTATT
1 TGTTTTTTTTTTA-TTTTATT
16171852 TGGATATTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
30 1 0.02
31 5 0.11
32 5 0.11
33 9 0.20
34 20 0.44
35 5 0.11
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (33 bp):
TGTTTTTTTTTTATTTTATTACTTATATATTTA
Found at i:16173451 original size:3 final size:3
Alignment explanation
Indices: 16173443--16173495 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
16173433 GAAACCATTT
16173443 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
16173491 TTA TT
1 TTA TT
16173496 TTGTAAGGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:16173691 original size:21 final size:21
Alignment explanation
Indices: 16173667--16173707 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
16173657 ATAATAACAA
*
16173667 TAAAACTAAAAATTAAAAAAT
1 TAAAACAAAAAATTAAAAAAT
*
16173688 TAAATCAAAAAATTAAAAAA
1 TAAAACAAAAAATTAAAAAA
16173708 AAAATGAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAAACAAAAAATTAAAAAAT
Found at i:16176196 original size:104 final size:104
Alignment explanation
Indices: 16175984--16176175 Score: 249
Period size: 104 Copynumber: 1.8 Consensus size: 104
16175974 AGACTTAGAG
* * * * * * *
16175984 ATTATGTCCAGAGGTCTTGCAAATCTCGACATCTTTGAATGCTCCTTGTATTAGAGACATTAAAA
1 ATTATGTCCAGAGGTCTTACAAATCTCAACATCTTTGAATGCTCATCGCATCAAAGACATTAAAA
* *
16176049 TTTTAAAAATTTAAAATGTTTTGTCCAAAGGTCTTGAAA
66 CTTTAAAAATTTAAAATATTTTGTCCAAAGGTCTTGAAA
* *** *
16176088 ATTATGTCCTGAGGTCTTACAAATCTCAACATCTTTGAATGCTCATCGCATCAAAGGTGTTGAAA
1 ATTATGTCCAGAGGTCTTACAAATCTCAACATCTTTGAATGCTCATCGCATCAAAGACATTAAAA
*
16176153 CTTTAAAAATTTAAATTATTTTG
66 CTTTAAAAATTTAAAATATTTTG
16176176 CTTTGAGGTC
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
104 73 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (104 bp):
ATTATGTCCAGAGGTCTTACAAATCTCAACATCTTTGAATGCTCATCGCATCAAAGACATTAAAA
CTTTAAAAATTTAAAATATTTTGTCCAAAGGTCTTGAAA
Found at i:16176384 original size:104 final size:102
Alignment explanation
Indices: 16176203--16176539 Score: 344
Period size: 104 Copynumber: 3.3 Consensus size: 102
16176193 TTATTCTCGG
* * * * *
16176203 AGGTCTTAAAGATTATGCCCAAAGGTTTTACAAATTTCAACATCTTTGAATGTTTCTTGTATTAG
1 AGGTCTTAAAGATTATG-CCAAAGGTCTTACAAATATCAACATCTTTGAATGTTACTCGTATCAG
* *
16176268 AGGCATTGAAACTTTGAAAATTTAAAATGTTTTACCCAG
65 A-ACATTGAAACTTTGAAAATTTAAAATGTTTTACCCAA
* ** *
16176307 TGGTCTTAAAGATTATGCTCGGAGGTCTTACAAATATCAACATCTTTGAATGTTCCTCGTATCAG
1 AGGTCTTAAAGATTATGC-CAAAGGTCTTACAAATATCAACATCTTTGAATGTTACTCGTATCAG
* * *
16176372 AATAATTGAAACTTTAAAAATTTTAAATGTTTTACCCAA
65 AA-CATTGAAACTTTGAAAATTTAAAATGTTTTACCCAA
* * * * ** * *
16176411 AGGTC----AGATTATGCCTAAGGTCTTATAAATCTTAACATCTTTGAATACTATTCATATCAGA
1 AGGTCTTAAAGATTATGCCAAAGGTCTTACAAATATCAACATCTTTGAATGTTACTCGTATCAGA
*
16176472 GACATTGAAACTTTGAAAATTTAAAATGTTTTGCCCAA
66 -ACATTGAAACTTTGAAAATTTAAAATGTTTTACCCAA
*
16176510 AGG-CTTTACAA-ATTATGCCCAAAAGTCTTA
1 AGGTC-TTA-AAGATTATG-CCAAAGGTCTTA
16176540 AAGATTATAC
Statistics
Matches: 193, Mismatches: 30, Indels: 20
0.79 0.12 0.08
Matches are distributed among these distances:
98 1 0.01
99 72 0.37
100 10 0.05
103 7 0.04
104 103 0.53
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (102 bp):
AGGTCTTAAAGATTATGCCAAAGGTCTTACAAATATCAACATCTTTGAATGTTACTCGTATCAGA
ACATTGAAACTTTGAAAATTTAAAATGTTTTACCCAA
Found at i:16176385 original size:230 final size:230
Alignment explanation
Indices: 16175977--16176399 Score: 566
Period size: 230 Copynumber: 1.8 Consensus size: 230
16175967 GTCCGAAAGA
* * * * *
16175977 CTTAGAGATTATGTCCAGAGGTCTTGCAAATCTCGACATCTTTGAATGCTCCTTGTATTAGAGAC
1 CTTAAAGATTATGCCCAAAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTTGTATTAGAGAC
* ** *
16176042 ATTAAAATTTTAAAAATTTAAAATGTTTTGTCCAAAGGTCTTGAAAATTATGTCCTGAGGTCTTA
66 ATTAAAACTTTAAAAATTTAAAATGTTTTACCCAAAGGTCTTGAAAATTATGTCCGGAGGTCTTA
* *
16176107 CAAATCTCAACATCTTTGAATGCTCATCGCATCAAAGGTGTTGAAACTTTAAAAA-TTTAAATTA
131 CAAATATCAACATCTTTGAATGCTCATCGCATCAAA-GTATTGAAACTTTAAAAATTTTAAATTA
16176171 TTTTGCTTTGAGGTCTTGTAAATTATTCTCGGAGGT
195 TTTTGCTTTGAGGTCTTGTAAATTATTCTCGGAGGT
* * * * *
16176207 CTTAAAGATTATGCCCAAAGGTTTTACAAATTTCAACATCTTTGAATGTTTCTTGTATTAGAGGC
1 CTTAAAGATTATGCCCAAAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTTGTATTAGAGAC
* * **
16176272 ATTGAAACTTTGAAAATTTAAAATGTTTTACCCAGTGGTCTT-AAAGATTATG-CTCGGAGGTCT
66 ATTAAAACTTTAAAAATTTAAAATGTTTTACCCAAAGGTCTTGAAA-ATTATGTC-CGGAGGTCT
* * *
16176335 TACAAATATCAACATCTTTGAATGTTCCTCGTATCAGAA-TAATTGAAACTTTAAAAATTTTAAA
129 TACAAATATCAACATCTTTGAATGCTCATCGCATCA-AAGT-ATTGAAACTTTAAAAATTTTAAA
16176399 T
192 T
16176400 GTTTTACCCA
Statistics
Matches: 165, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
229 5 0.03
230 151 0.92
231 9 0.05
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (230 bp):
CTTAAAGATTATGCCCAAAGGTCTTACAAATCTCAACATCTTTGAATGCTCCTTGTATTAGAGAC
ATTAAAACTTTAAAAATTTAAAATGTTTTACCCAAAGGTCTTGAAAATTATGTCCGGAGGTCTTA
CAAATATCAACATCTTTGAATGCTCATCGCATCAAAGTATTGAAACTTTAAAAATTTTAAATTAT
TTTGCTTTGAGGTCTTGTAAATTATTCTCGGAGGT
Found at i:16176574 original size:225 final size:226
Alignment explanation
Indices: 16176309--16176732 Score: 552
Period size: 225 Copynumber: 1.9 Consensus size: 226
16176299 TTACCCAGTG
* * * *
16176309 GTCTTAAAGATTATGCTCGGAGGTCTTACAAATATCAACATCTTTGAATGTTCCTCGTATCAGAA
1 GTCTTAAAGATTATACTCGGAAGTCTTACAAATATCAACATCTTTGAATGCTCCTCATATCAGAA
* * * * *
16176374 TAATTGAAACTTTAAAAATTTTAA-ATGTTTTACCC-AAAGGTC-AGATTATGCCT-AAGGTCTT
66 GAATTAAAACTTTAAAAA-TTTAATATGTTTTACCCGAAA-GTCAAGATTATACCTGAAAGTCAT
* * *
16176435 ATAAATCTTAACATCTTTGAATACTATTCA-TATCAGAGACATTGAAACTTTGAAAATTTAAAAT
129 ACAAATCTCAACATCTTTGAAT-CT-TCCACTATCAGAGACATTGAAACTTTGAAAATTTAAAAT
16176499 GTTTTGCCCAAAGGCTTTACAAATTATGCCCAAAA
192 GTTTTGCCCAAAGGCTTTACAAATTATGCCCAAAA
* *
16176534 GTCTTAAAGATTATACTCGGAAGTCTTACAAATCTCAACATCTTTGAATGCTCCTCATATCAGAG
1 GTCTTAAAGATTATACTCGGAAGTCTTACAAATATCAACATCTTTGAATGCTCCTCATATCAGAA
* * *
16176599 GCATTAAAACTTTGAAAATTTAATATGTTTTGCCCGAAAGTCTTAAAGATTATACCTGAAAGTCA
66 GAATTAAAACTTTAAAAATTTAATATGTTTTACCCGAAAGTC---AAGATTATACCTGAAAGTCA
* ** *
16176664 TACAAATCTCAACATCTTTGAATGTTCCACGTATCAGAGGTATTGAAACTTTGAAATTTTAAAAT
128 TACAAATCTCAACATCTTTGAATCTTCCAC-TATCAGAGACATTGAAACTTTGAAAATTTAAAAT
16176729 GTTT
192 GTTT
16176733 GGTCAGGAGG
Statistics
Matches: 169, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
224 5 0.03
225 86 0.51
226 3 0.02
228 3 0.02
229 11 0.07
230 61 0.36
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (226 bp):
GTCTTAAAGATTATACTCGGAAGTCTTACAAATATCAACATCTTTGAATGCTCCTCATATCAGAA
GAATTAAAACTTTAAAAATTTAATATGTTTTACCCGAAAGTCAAGATTATACCTGAAAGTCATAC
AAATCTCAACATCTTTGAATCTTCCACTATCAGAGACATTGAAACTTTGAAAATTTAAAATGTTT
TGCCCAAAGGCTTTACAAATTATGCCCAAAA
Found at i:16176713 original size:104 final size:104
Alignment explanation
Indices: 16176525--16176732 Score: 310
Period size: 104 Copynumber: 2.0 Consensus size: 104
16176515 TTACAAATTA
* * *
16176525 TGCCCAAAAGTCTTAAAGATTATACTCGGAAGTCTTACAAATCTCAACATCTTTGAATGCTCCTC
1 TGCCCAAAAGTCTTAAAGATTATACTCGAAAGTCATACAAATCTCAACATCTTTGAATGCTCCAC
*
16176590 ATATCAGAGGCATTAAAACTTTGAAAATTTAATATGTTT
66 ATATCAGAGGCATTAAAACTTTGAAAATTTAAAATGTTT
* *
16176629 TGCCCGAAAGTCTTAAAGATTATAC-CTGAAAGTCATACAAATCTCAACATCTTTGAATGTTCCA
1 TGCCCAAAAGTCTTAAAGATTATACTC-GAAAGTCATACAAATCTCAACATCTTTGAATGCTCCA
* * * *
16176693 CGTATCAGAGGTATTGAAACTTTGAAATTTTAAAATGTTT
65 CATATCAGAGGCATTAAAACTTTGAAAATTTAAAATGTTT
16176733 GGTCAGGAGG
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
103 1 0.01
104 92 0.99
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (104 bp):
TGCCCAAAAGTCTTAAAGATTATACTCGAAAGTCATACAAATCTCAACATCTTTGAATGCTCCAC
ATATCAGAGGCATTAAAACTTTGAAAATTTAAAATGTTT
Found at i:16177466 original size:146 final size:144
Alignment explanation
Indices: 16177089--16177623 Score: 566
Period size: 145 Copynumber: 3.7 Consensus size: 144
16177079 GAAAAGTACA
* * * *
16177089 AAATTACTAAAATGCCCTTGAGAGGGTATTTTCGTAATTTGGCCTT-ATTGAGCTTGAATTTTCA
1 AAATTACTAAAATGCCCTTTAG-GGGTATTTTTGTAATTTGGCCTTCATCGAGCTTGGATTTTCA
* *
16177153 T-AAAATATTTTAGATCTCAATTTTATAATATTTCATAATTTTTTGTGTATTTGAAATCACAGCA
65 TGAAAAT-TTTTAGATCTCAATTTTATAATATTTCATAA-CTTTTGTGTATTTGAAATCACAGCT
* * * *
16177217 ATATCCCGAGAAGTATA
128 GTACCCCGAGAAGTGTG
** * **
16177234 AAATTACTTGAATGCCTTTTAGGGGATATTTTTGTAATTTGGCCTTC-TCGAGCTCAGATTTTCA
1 AAATTACTAAAATGCCCTTTAGGGG-TATTTTTGTAATTTGGCCTTCATCGAGCTTGGATTTTCA
* * * * * **
16177298 TTAAACTTTTTAGATTTTAATTTTATAATATTTCATGA-TTTATGATACATTTGAAATCACAGCT
65 TGAAAATTTTTAGATCTCAATTTTATAATATTTCATAACTTT-TG-TGTATTTGAAATCACAGCT
* *
16177362 GTACCCCAATAAGTGTG
128 GTACCCCGAGAAGTGTG
* * *
16177379 AAATTACCAAAATACCCTTACAGGGGTATTTTTCGTAATTTGGCCTTCAT-GAGCTTGGATTTTC
1 AAATTACTAAAATGCCCTT-TAGGGGTATTTTT-GTAATTTGGCCTTCATCGAGCTTGGATTTTC
* *
16177443 ATGAAAATTTTTAGATCTCAATTTCATAATATTTCATAACTTTTGGTGTATTTGAAATTACTA--
64 ATGAAAATTTTTAGATCTCAATTTTATAATATTTCATAACTTTT-GTGTATTTGAAATCAC-AGC
*
16177506 TAGTACCCCGAGAGGTGTG
127 T-GTACCCCGAGAAGTGTG
* * ** *
16177525 AAATTA-TGAAAATGCTCTTTAGGGGTATTTTTGTAATTTGG-TTTTTTCGAGCTTGGATTTCCA
1 AAATTACT-AAAATGCCCTTTAGGGGTATTTTTGTAATTTGGCCTTCATCGAGCTTGGATTTTCA
* *
16177588 TGAAACTTTTCAGATCTCAATTTTATAATATTTCAT
65 TGAAAATTTTTAGATCTCAATTTTATAATATTTCAT
16177624 GATTTTTGGT
Statistics
Matches: 323, Mismatches: 53, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
143 6 0.02
144 61 0.19
145 140 0.43
146 110 0.34
147 6 0.02
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (144 bp):
AAATTACTAAAATGCCCTTTAGGGGTATTTTTGTAATTTGGCCTTCATCGAGCTTGGATTTTCAT
GAAAATTTTTAGATCTCAATTTTATAATATTTCATAACTTTTGTGTATTTGAAATCACAGCTGTA
CCCCGAGAAGTGTG
Found at i:16179966 original size:23 final size:23
Alignment explanation
Indices: 16179940--16179993 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
16179930 AGCTAGACTA
*
16179940 GGCTTAATGTGCTAGCCAAAATG
1 GGCTTAAAGTGCTAGCCAAAATG
*
16179963 GGCTTAAAGTGCTAGCTAAAATG
1 GGCTTAAAGTGCTAGCCAAAATG
16179986 GGCTTAAA
1 GGCTTAAA
16179994 ATCTTAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (23 bp):
GGCTTAAAGTGCTAGCCAAAATG
Found at i:16180000 original size:31 final size:32
Alignment explanation
Indices: 16179965--16180025 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
16179955 CCAAAATGGG
*
16179965 CTTAA-AGTGCTAGCTAAAATGGGCTTAAAAT
1 CTTAATAGTGCTAGCTAAAATAGGCTTAAAAT
* *
16179996 CTTAATTGTGCTAGCTAAACTAGGCTTAAA
1 CTTAATAGTGCTAGCTAAAATAGGCTTAAA
16180026 TATCATTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 5 0.19
32 21 0.81
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (32 bp):
CTTAATAGTGCTAGCTAAAATAGGCTTAAAAT
Found at i:16180071 original size:22 final size:22
Alignment explanation
Indices: 16180043--16180173 Score: 118
Period size: 22 Copynumber: 5.9 Consensus size: 22
16180033 TGGGTACCAA
*
16180043 CTAATCTAGGCTTAGGTGCCAG
1 CTAATCTAGGCTTAAGTGCCAG
*
16180065 CTAATCTAGGCTTAAGTGCTAG
1 CTAATCTAGGCTTAAGTGCCAG
* * * **
16180087 CTAATTTGGGCTTAAAATGTTAG
1 CTAATCTAGGCTT-AAGTGCCAG
*
16180110 CTAATCTAGGCTTAGGTGCCAG
1 CTAATCTAGGCTTAAGTGCCAG
* * * *
16180132 CTAATTTGGGCTGAAAGGGCCAG
1 CTAATCTAGGCT-TAAGTGCCAG
* *
16180155 CTAATTTGGGCTTAAGTGC
1 CTAATCTAGGCTTAAGTGC
16180174 TAGTTGATCT
Statistics
Matches: 88, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
22 51 0.58
23 37 0.42
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (22 bp):
CTAATCTAGGCTTAAGTGCCAG
Found at i:16180118 original size:45 final size:45
Alignment explanation
Indices: 16180060--16180176 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
16180050 AGGCTTAGGT
* *
16180060 GCCAGCTAATCTAGGCTTAAGTGCTAGCTAATTTGGGCTTAAAAT
1 GCCAGCTAATCTAGGCTTAAGTGCTAGCTAATTTGGGCTGAAAAG
** * * *
16180105 GTTAGCTAATCTAGGCTTAGGTGCCAGCTAATTTGGGCTGAAAGG
1 GCCAGCTAATCTAGGCTTAAGTGCTAGCTAATTTGGGCTGAAAAG
* *
16180150 GCCAGCTAATTTGGGCTTAAGTGCTAG
1 GCCAGCTAATCTAGGCTTAAGTGCTAG
16180177 TTGATCTAGG
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (45 bp):
GCCAGCTAATCTAGGCTTAAGTGCTAGCTAATTTGGGCTGAAAAG
Found at i:16180184 original size:67 final size:67
Alignment explanation
Indices: 16180043--16180193 Score: 196
Period size: 67 Copynumber: 2.3 Consensus size: 67
16180033 TGGGTACCAA
* * * *
16180043 CTAATCTAGGCTTAGGTGCCAGCTAATCTAGGCTTAAGTGCTAGCTAATTTGGGCTTAAAATGTT
1 CTAATCTAGGCTTAGGTGCCAGCTAATCTAGGCTAAAGGGCCAGCTAATTTGGGCTTAAAATGCT
16180108 AG
66 AG
* * *
16180110 CTAATCTAGGCTTAGGTGCCAGCTAATTTGGGCTGAAAGGGCCAGCTAATTTGGGCTT-AAGTGC
1 CTAATCTAGGCTTAGGTGCCAGCTAATCTAGGCT-AAAGGGCCAGCTAATTTGGGCTTAAAATGC
16180174 TAG
65 TAG
* * *
16180177 TTGATCTAGGTTTAGGT
1 CTAATCTAGGCTTAGGT
16180194 CTTATTTTGT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
67 53 0.73
68 20 0.27
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (67 bp):
CTAATCTAGGCTTAGGTGCCAGCTAATCTAGGCTAAAGGGCCAGCTAATTTGGGCTTAAAATGCT
AG
Found at i:16180797 original size:15 final size:15
Alignment explanation
Indices: 16180777--16180805 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16180767 GTCTTTCTTA
16180777 TGATGCAAATGCAAG
1 TGATGCAAATGCAAG
16180792 TGATGCAAATGCAA
1 TGATGCAAATGCAA
16180806 ATGTCTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (15 bp):
TGATGCAAATGCAAG
Found at i:16183575 original size:14 final size:14
Alignment explanation
Indices: 16183556--16183586 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
16183546 TTGTGAATCA
16183556 ATTTTTATTTTCTT
1 ATTTTTATTTTCTT
*
16183570 ATTTTTATTTTTTT
1 ATTTTTATTTTCTT
16183584 ATT
1 ATT
16183587 ATATATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (14 bp):
ATTTTTATTTTCTT
Found at i:16187856 original size:20 final size:20
Alignment explanation
Indices: 16187828--16187865 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
16187818 ATAAGAATAT
*
16187828 ATGCAAAAGATCAAATAAAA
1 ATGCAAAAGATAAAATAAAA
*
16187848 ATGCGAAAGATAAAATAA
1 ATGCAAAAGATAAAATAA
16187866 CATTCAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.08, G:0.13, T:0.16
Consensus pattern (20 bp):
ATGCAAAAGATAAAATAAAA
Found at i:16188786 original size:59 final size:59
Alignment explanation
Indices: 16188672--16189065 Score: 386
Period size: 59 Copynumber: 6.6 Consensus size: 59
16188662 TGCTTTTATA
* * * * *
16188672 CAAGGAAAATTGATATTTTCAACTTTTTCTTAAAAATA-TTTTTCCTAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTT--TAAAATTTTTATTTT
* * *
16188732 CGAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATTCCTTTTTAAAATTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTAAAATTTTTATTTT
* * * ** ** *
16188791 TAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATGTTTTTTTTTTAA-TTTTATCTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ACTTTTTTAAAATTTTTATTTT
* * * *
16188850 CAAGCAAAATTGATACTTTCAACTTTTTCTCAAAAATACATTTTTTTGAAATTTTTATTTC
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATAC--TTTTTTAAAATTTTTATTTT
* * * *
16188911 CAA-AAAAAGTTGATACTTTCAATTTTTCCTTAGAAACACTTTTTTCAAAA-TTTTATTTT
1 CAAGAAAAA-TTGATACTTTCAACTTTTCCTCAAAAATACTTTTTT-AAAATTTTTATTTT
* ** * * *
16188970 AAAGAAAAATTGATACTTTTGACTTTT-CTCAAAAATACCTTTTCAAAATCTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTAAAATTTTTATTTT
* *
16189028 CAA-AGAAAATTGATACCTTCAACTTTTCCTAAAAAATA
1 CAAGA-AAAATTGATACTTTCAACTTTTCCTCAAAAATA
16189066 TATATATTTT
Statistics
Matches: 273, Mismatches: 50, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
57 5 0.02
58 41 0.15
59 128 0.47
60 60 0.22
61 39 0.14
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.45
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTAAAATTTTTATTTT
Found at i:16189039 original size:178 final size:178
Alignment explanation
Indices: 16188676--16189065 Score: 441
Period size: 178 Copynumber: 2.2 Consensus size: 178
16188666 TTTATACAAG
* * * *
16188676 GAAAATTGATATTTTCAACTTTTTCTTAAAAAT-ATTTTTCCTAAAAATTTTATTTTCGAGAAAA
1 GAAAATTGATACTTTCAACTTTTTCTAAAAAATAATTTTTCCTAAAAATTTTATTTTCCAAAAAA
** * *
16188740 ATTGATACTTTCAACTTTTCCTCAAAAATTCCTTTTTAAAATTTTTATTTTTAAGGAAAATTGAT
66 ATTGATACTTTCAACTTTTCCTCAAAAACACCTTTTTAAAATTTTTATTTTAAAGAAAAATTGAT
*** ***
16188805 ACTTTCAACTTTTCTTCAAAAATGTTTTTTTTTTAATTTTATCTTCAA
131 ACTTTCAACTTTTCTTCAAAAATGACCTTTTCAAAATTTTATCTTCAA
* * * *
16188853 GCAAAATTGATACTTTCAACTTTTTCTCAAAAATACATTTTT-TTGAAATTTTTA-TTTCCAAAA
1 G-AAAATTGATACTTTCAACTTTTTCTAAAAAATA-ATTTTTCCTAAAAATTTTATTTTCCAAAA
* * * *
16188916 AAAGTTGATACTTTCAATTTTTCCTTAGAAACACTTTTTTCAAAA-TTTTATTTTAAAGAAAAAT
64 AAA-TTGATACTTTCAACTTTTCCTCAAAAACACCTTTTT-AAAATTTTTATTTTAAAGAAAAAT
** *
16188980 TGATACTTTTGACTTTTC-TCAAAAAT-ACCTTTTCAAAATCTTTATTTTCAAA
127 TGATACTTTCAACTTTTCTTCAAAAATGACCTTTTCAAAAT-TTTATCTTC-AA
* *
16189032 GAAAATTGATACCTTCAACTTTTCCTAAAAAATA
1 GAAAATTGATACTTTCAACTTTTTCTAAAAAATA
16189066 TATATATTTT
Statistics
Matches: 179, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
177 8 0.04
178 86 0.48
179 75 0.42
180 10 0.06
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (178 bp):
GAAAATTGATACTTTCAACTTTTTCTAAAAAATAATTTTTCCTAAAAATTTTATTTTCCAAAAAA
ATTGATACTTTCAACTTTTCCTCAAAAACACCTTTTTAAAATTTTTATTTTAAAGAAAAATTGAT
ACTTTCAACTTTTCTTCAAAAATGACCTTTTCAAAATTTTATCTTCAA
Found at i:16189090 original size:16 final size:18
Alignment explanation
Indices: 16189059--16189091 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
16189049 ACTTTTCCTA
16189059 AAAAATATATATATTTTT
1 AAAAATATATATATTTTT
16189077 AAAAAT-TA-ATATTTT
1 AAAAATATATATATTTT
16189092 CAATTTCTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAAAATATATATATTTTT
Found at i:16189153 original size:60 final size:59
Alignment explanation
Indices: 16189077--16189293 Score: 222
Period size: 60 Copynumber: 3.6 Consensus size: 59
16189067 ATATATTTTT
* * *
16189077 AAAAATTAATATTTTCAA-TTTCTCCTCAAAAATGCTTTTTGAATTTTTTTTATTTTCAAG
1 AAAAATTGATACTTTCAACTTT-TCCTCAAAAATACTTTTTGAATTTTTTTTATTTT-AAG
*
16189137 AAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTTTTTTTATTTTTAAG
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTG--AA-TTTTTTTTA-TTTTAAG
* * * * * *
16189200 GAAAATCGATGCTTTCAACTTTTCCTTAAAAATACATTTTTTGAAGTTTTTGT-TTTTAAG
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATAC--TTTTTGAATTTTTTTTATTTTAAG
* * * *
16189260 GAAAATTGATATTTTTAAGTTTTCCTCAAAAATA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATA
16189294 TATATTTTTT
Statistics
Matches: 133, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
60 68 0.51
61 3 0.02
62 8 0.06
63 44 0.33
64 4 0.03
65 6 0.05
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (59 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTGAATTTTTTTTATTTTAAG
Found at i:16189928 original size:11 final size:10
Alignment explanation
Indices: 16189887--16189926 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
16189877 ATTTGGAATT
*
16189887 TCCAAAAAAT
1 TCCAAAAAAA
*
16189897 TTCAAAAAAA
1 TCCAAAAAAA
*
16189907 TGCAAAAAAA
1 TCCAAAAAAA
16189917 TCCAAAAAAA
1 TCCAAAAAAA
16189927 ATTTAATCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.68, C:0.15, G:0.03, T:0.15
Consensus pattern (10 bp):
TCCAAAAAAA
Found at i:16190601 original size:31 final size:33
Alignment explanation
Indices: 16190539--16190601 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 33
16190529 TAAGTTAAAA
* *
16190539 TCTGAAAACAAAATGACTTGGATTGAATCGAAG
1 TCTGAAAACAAAATAACTTGGACTGAATCGAAG
16190572 TCTG-AAAC-AAATAACTTGGACT-AAGTCGAA
1 TCTGAAAACAAAATAACTTGGACTGAA-TCGAA
16190602 AAAAGATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 2 0.07
31 17 0.63
32 4 0.15
33 4 0.15
ACGTcount: A:0.43, C:0.14, G:0.19, T:0.24
Consensus pattern (33 bp):
TCTGAAAACAAAATAACTTGGACTGAATCGAAG
Found at i:16190782 original size:86 final size:85
Alignment explanation
Indices: 16190524--16191020 Score: 343
Period size: 86 Copynumber: 5.8 Consensus size: 85
16190514 AAGAAAGATT
* * * * * **
16190524 TGACATAAGT-TAAAATCTGAAAACAAAATGACTTGGATTGAATCGAAGTCTGAAACAAATAACT
1 TGACATAAGTCGAAAA-CCGAAAACAAAAAGACTTGGACTGAATC-AAATCTGAAATGAATAACT
* * * *
16190588 TGGACT-AAGTCGAAAAAAGATC
64 TGGACTAAACT-GAAGAAGGACC
* * * * *
16190610 T-AGCATAGGTC-AAAATTCGAAAACAAAATGACTTGGATTGAAT---ATCTGAAATGAATATCT
1 TGA-CATAAGTCGAAAA-CCGAAAACAAAAAGACTTGGACTGAATCAAATCTGAAATGAATAACT
* * *
16190670 TGGACTGAACTGAAAAAAGACC
64 TGGACTAAACTGAAGAAGGACC
* ** * *
16190692 TGACATAAATCGAAGGCCAAAAACAAAAGGACTTGGACTGAATCGAAATCTGAAATGAATAACTT
1 TGACATAAGTCGAAAACCGAAAACAAAAAGACTTGGACTGAATC-AAATCTGAAATGAATAACTT
* * *
16190757 GGAATAAATTGAAGAAGGACT
65 GGACTAAACTGAAGAAGGACC
* * * * * * *
16190778 TGACATAAGTTGAAACCCGAAAATAAAAAAACCTGGACT-AAACATAAGTTTGAAATGAATAACT
1 TGACATAAGTCGAAAACCGAAAACAAAAAGACTTGGACTGAATCA-AA-TCTGAAATGAATAACT
* * * *
16190842 TAGACTAAGCCGAAGATGGACC
64 TGGACTAAACTGAAGAAGGACC
* * ** * * * *
16190864 TGACATAAGTAG-AAACCTGAAAACAAAAAGACTTGGGCAAAACTGAAGTCTAAAATTAATAACT
1 TGACATAAGTCGAAAACC-GAAAACAAAAAGACTTGGACTGAA-TCAAATCTGAAATGAATAACT
* *
16190928 TGGACT-AAGTAGAAGAAGGACT
64 TGGACTAAACT-GAAGAAGGACC
* *
16190950 TGACATAAGTC-AAAACTCGAAAACAAAAGGACCTGGACTGAATCAAAGTC-GAAATGAATAACT
1 TGACATAAGTCGAAAAC-CGAAAACAAAAAGACTTGGACTGAATCAAA-TCTGAAATGAATAACT
16191013 TGGACTAA
64 TGGACTAA
16191021 GCCAACATAC
Statistics
Matches: 321, Mismatches: 71, Indels: 38
0.75 0.17 0.09
Matches are distributed among these distances:
82 59 0.18
83 6 0.02
84 1 0.00
85 31 0.10
86 219 0.68
87 4 0.01
88 1 0.00
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (85 bp):
TGACATAAGTCGAAAACCGAAAACAAAAAGACTTGGACTGAATCAAATCTGAAATGAATAACTTG
GACTAAACTGAAGAAGGACC
Found at i:16190899 original size:172 final size:171
Alignment explanation
Indices: 16190711--16191023 Score: 414
Period size: 172 Copynumber: 1.8 Consensus size: 171
16190701 TCGAAGGCCA
* ** * *
16190711 AAAACAAAAGGACTTGGACTGAA-TCGAAATCTGAAATGAATAACTTGGAATAAATTGAAGAAGG
1 AAAACAAAAAGACTTGGACAAAACT-GAAATCTAAAATGAATAACTTGGAATAAATAGAAGAAGG
** * *
16190775 ACTTGACATAAGTTGAAACCCGAAAATAAAAAAACCTGGACT-AAACATAAGTTTGAAATGAATA
65 ACTTGACATAAGTCAAAACCCGAAAACAAAAAAACCTGGACTGAAACA-AAG-TCGAAATGAATA
16190839 ACTTAGACTAAGCCGAAGATGGACCTGACATAAGTAGAAACCTG
128 ACTTAGACTAAGCCGAAGATGGACCTGACATAAGTAGAAACCTG
* * * * *
16190883 AAAACAAAAAGACTTGGGCAAAACTGAAGTCTAAAATTAATAACTTGGACTAAGTAGAAGAAGGA
1 AAAACAAAAAGACTTGGACAAAACTGAAATCTAAAATGAATAACTTGGAATAAATAGAAGAAGGA
* ** *
16190948 CTTGACATAAGTCAAAACTCGAAAACAAAAGGACCTGGACTGAATCAAAGTCGAAATGAATAACT
66 CTTGACATAAGTCAAAACCCGAAAACAAAAAAACCTGGACTGAAACAAAGTCGAAATGAATAACT
*
16191013 TGGACTAAGCC
131 TAGACTAAGCC
16191024 AACATACATT
Statistics
Matches: 120, Mismatches: 19, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
171 24 0.20
172 91 0.76
173 5 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (171 bp):
AAAACAAAAAGACTTGGACAAAACTGAAATCTAAAATGAATAACTTGGAATAAATAGAAGAAGGA
CTTGACATAAGTCAAAACCCGAAAACAAAAAAACCTGGACTGAAACAAAGTCGAAATGAATAACT
TAGACTAAGCCGAAGATGGACCTGACATAAGTAGAAACCTG
Found at i:16201622 original size:119 final size:119
Alignment explanation
Indices: 16201408--16201741 Score: 412
Period size: 119 Copynumber: 2.8 Consensus size: 119
16201398 TGCTTTTATA
* * *** *
16201408 CAAGGAAAATTGATACTTTCAATTTTTCCT-TAAAATTGTTTTTCTTGAAAATTTTATTTTCAAT
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTT-TTGAAATTTTTATTTTCAA-
* *
16201472 GAAAATTCATACTT-TCAACTTTTCCTTAAAAATC-CCTTTTT-AAAATCTTTATTTT
64 GAAAATTGATACTTCT-AACTTTTCCTCAAAAATCACCTTTTTGAAAAT-TTTATTTT
*
16201527 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTGAAATTTTTATTTCCAAGA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTGAAATTTTTATTTTCAAGA
* *
16201592 AAAGTTGATACTTCTAATTTTTCCTCAAAAA-CACTTTTTTGAAAATTTTATTTT
66 AAA-TTGATACTTCTAACTTTTCCTCAAAAATCACCTTTTTGAAAATTTTATTTT
* ** * *
16201646 CAAGAAAAATTGATACTTTTGACTTTTCCTCAAAAATACC-TTTTTGGAATCTTTATTTTCAAGA
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTGAAATTTTTATTTTCAAG-
16201710 AAAATTGATACCTTC-AACTTTTCCTCAAAAAT
65 AAAATTGATA-CTTCTAACTTTTCCTCAAAAAT
16201742 ATATATTTTT
Statistics
Matches: 189, Mismatches: 18, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
118 47 0.25
119 127 0.67
120 15 0.08
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (119 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTGAAATTTTTATTTTCAAGA
AAATTGATACTTCTAACTTTTCCTCAAAAATCACCTTTTTGAAAATTTTATTTT
Found at i:16201742 original size:59 final size:59
Alignment explanation
Indices: 16201408--16201742 Score: 390
Period size: 59 Copynumber: 5.6 Consensus size: 59
16201398 TGCTTTTATA
* * * * ***
16201408 CAAGGAAAATTGATACTTTCAATTTTTCCTTAAAATTGTTTTTCTTGAAAAT-TTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTT-TTG-AAATCTTTATTTT
* * * *
16201468 CAATG-AAAATTCATACTTTCAACTTTTCCTTAAAAATCCCTTTTTAAAATCTTTATTTT
1 CAA-GAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATCTTTATTTT
* * *
16201527 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTTGAAATTTTTATTTC
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACC-TTTTTGAAATCTTTATTTT
* * * *
16201587 CAAGAAAAGTTGATAC-TTCTAATTTTTCCTCAAAAACACTTTTTTGAAAAT-TTTATTTT
1 CAAGAAAAATTGATACTTTC-AACTTTTCCTCAAAAATACCTTTTTG-AAATCTTTATTTT
** *
16201646 CAAGAAAAATTGATACTTTTGACTTTTCCTCAAAAATACCTTTTTGGAATCTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATCTTTATTTT
*
16201705 CAAGAAAAATTGATACCTTCAACTTTTCCTCAAAAATA
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
16201743 TATATTTTTT
Statistics
Matches: 238, Mismatches: 29, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
58 8 0.03
59 141 0.59
60 88 0.37
61 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.44
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATACCTTTTTGAAATCTTTATTTT
Found at i:16201883 original size:167 final size:164
Alignment explanation
Indices: 16201607--16201919 Score: 459
Period size: 167 Copynumber: 1.9 Consensus size: 164
16201597 TGATACTTCT
**
16201607 AATTTTTCCTCAAAAACACTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTTGACTTT
1 AATTTTTCCTCAAAAACACTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTT
* *
16201672 TCCTCAAAAATACCTTTTTGGAATCTTTATTTTCAAGAAAAATTGATACCTTCAACTTTTCCTCA
66 TCCTCAAAAATACATTTTTGGAATCTTTATTTTCAAGAAAAATTGACACCTTCAACTTTTCCTCA
16201737 AAAATATATATTTTTTAGAAAAATTAATATTTTC
131 AAAATATATATTTTTTAGAAAAATTAATATTTTC
* *
16201771 AATTTTTCCTCAAAAATAC-TTTTTGAAAAAATTTTTTATTTTCAAGAAAAATTTATACTTTCAA
1 AATTTTTCCTCAAAAACACTTTTTTG--AAAA--TTTTATTTTCAAGAAAAATTGATACTTTCAA
* * * * * *
16201835 CTTTTCCTCAAAAATACATTTTTTGAAGTTTTTGTTTT-AAGGAAAATTGACACTTTTAACTTTT
62 CTTTTCCTCAAAAATACATTTTTGGAA-TCTTTATTTTCAAGAAAAATTGACACCTTCAACTTTT
16201899 CCTCAAAAATATATATTTTTT
126 CCTCAAAAATATATATTTTTT
16201920 TAATTATTAT
Statistics
Matches: 132, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
163 6 0.05
164 18 0.14
165 4 0.03
167 96 0.73
168 8 0.06
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.45
Consensus pattern (164 bp):
AATTTTTCCTCAAAAACACTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTT
TCCTCAAAAATACATTTTTGGAATCTTTATTTTCAAGAAAAATTGACACCTTCAACTTTTCCTCA
AAAATATATATTTTTTAGAAAAATTAATATTTTC
Found at i:16201896 original size:59 final size:61
Alignment explanation
Indices: 16201803--16201918 Score: 164
Period size: 59 Copynumber: 1.9 Consensus size: 61
16201793 TTGAAAAAAT
* *
16201803 TTTTTATTTTCAAGAAAAATTTATACTTTCAACTTTTCCTCAAAAATACAT-TTTTTGAAG
1 TTTTTATTTTCAAGAAAAATTGACACTTTCAACTTTTCCTCAAAAATACATATTTTTGAAG
* * * *
16201863 TTTTTGTTTT-AAGGAAAATTGACACTTTTAACTTTTCCTCAAAAATATATATTTTT
1 TTTTTATTTTCAAGAAAAATTGACACTTTCAACTTTTCCTCAAAAATACATATTTTT
16201919 TTAATTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
59 35 0.71
60 14 0.29
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (61 bp):
TTTTTATTTTCAAGAAAAATTGACACTTTCAACTTTTCCTCAAAAATACATATTTTTGAAG
Found at i:16201940 original size:59 final size:59
Alignment explanation
Indices: 16201745--16201940 Score: 161
Period size: 59 Copynumber: 3.3 Consensus size: 59
16201735 CAAAAATATA
* * * * *
16201745 TATT-TTTT-AGAAAAATTAATATTTTCAATTTTTCCTCAAAAATAC--TTTTTGAAAAAATT
1 TATTATTTTAAGAAAAATTGACACTTTCAACTTTTCCTCAAAAATACATTTTTTG----AAGT
* * *
16201804 TTTTATTTTCAAGAAAAATTTATACTTTCAACTTTTCCTCAAAAATACATTTTTTGAAGT
1 TATTATTTT-AAGAAAAATTGACACTTTCAACTTTTCCTCAAAAATACATTTTTTGAAGT
* * * * * *
16201864 TTTTGTTTTAAGGAAAATTGACACTTTTAACTTTTCCTCAAAAATATATATTTTTTTAA-T
1 TATTATTTTAAGAAAAATTGACACTTTCAACTTTTCCTC-AAAA-ATACATTTTTTGAAGT
16201924 TATTATTTTAA-AAAAAT
1 TATTATTTTAAGAAAAAT
16201941 CATTGAAAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
59 34 0.30
60 29 0.25
61 12 0.10
62 34 0.30
64 6 0.05
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.48
Consensus pattern (59 bp):
TATTATTTTAAGAAAAATTGACACTTTCAACTTTTCCTCAAAAATACATTTTTTGAAGT
Found at i:16201997 original size:22 final size:21
Alignment explanation
Indices: 16201958--16202000 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
16201948 AATTTAAGGA
16201958 TGTTTAATTAAATAAATAAAT
1 TGTTTAATTAAATAAATAAAT
* *
16201979 TGTTTCAATTTAATCAATAAAT
1 TGTTT-AATTAAATAAATAAAT
16202001 AAATAAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (21 bp):
TGTTTAATTAAATAAATAAAT
Found at i:16204659 original size:200 final size:201
Alignment explanation
Indices: 16204302--16204672 Score: 432
Period size: 200 Copynumber: 1.9 Consensus size: 201
16204292 TATCATGTGA
* *
16204302 AAAAAAGAGAAATTTTATTATATTAAAAATTTTTATAAATACTCAAATATATTGGTGGTGTTTAA
1 AAAAAAGAGAAATTTTATTATATTAAAAATTTTTATAAATACTCAAATATATTGGTAGTATTTAA
* * ***
16204367 AAAAAATCTTCTTAGCTAGAGATTTTTAAAGCACACTACTTGGAATACCTTAAAATCCCATCATC
66 AAAAAATCTTCTCACCTAGAGATTTTTAAAGCACACTACTCAAAATACCTTAAAATCCCATCATC
* * * * *
16204432 GGGCAAAATTCTCTTTTCCTTCA-TTTTTATTATTTTTATTAATAATTTTAGTTAATTTTATTTT
131 AGACAAAATTCTCCTTTCCTACATTTTTTAATATTTTTATTAATAATTTTAGTTAATTTTATTTT
16204496 TTATAG
196 TTATAG
* * * *
16204502 AAAAAGGA-AAATTTTATTGTATTGAAAACA-TTTTATAAATACTCCAATATGTTGGTAGTATTT
1 AAAAAAGAGAAATTTTATTATATT-AAAA-ATTTTTATAAATACTCAAATATATTGGTAGTATTT
* * * * * *
16204565 -AAAAAAATCTTCTCACCTAGAGATTTTGT-AGGTATTACTACTCAAAATATCTTAGAATCTCAT
64 AAAAAAAATCTTCTCACCTAGAGATTTT-TAAAGCA-CACTACTCAAAATACCTTAAAATCCCAT
*
16204628 CATCAGATAAATATT-TCCTTT-CTCACATTTTTTAATATTTTTATT
127 CATCAGACAAA-ATTCTCCTTTCCT-ACATTTTTTAATATTTTTATT
16204673 TCAAAATTAT
Statistics
Matches: 141, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
199 44 0.31
200 77 0.55
201 20 0.14
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.43
Consensus pattern (201 bp):
AAAAAAGAGAAATTTTATTATATTAAAAATTTTTATAAATACTCAAATATATTGGTAGTATTTAA
AAAAAATCTTCTCACCTAGAGATTTTTAAAGCACACTACTCAAAATACCTTAAAATCCCATCATC
AGACAAAATTCTCCTTTCCTACATTTTTTAATATTTTTATTAATAATTTTAGTTAATTTTATTTT
TTATAG
Found at i:16204960 original size:16 final size:15
Alignment explanation
Indices: 16204941--16204989 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
16204931 AACTAAAAAT
16204941 AATAAAAAAAGTTAAA
1 AATAAAAAAA-TTAAA
* *
16204957 AATAATTAAATTTAAA
1 AATAA-AAAAATTAAA
*
16204973 AATTAAAAAATTAAA
1 AATAAAAAAATTAAA
16204988 AA
1 AA
16204990 AATTACTTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
15 10 0.37
16 14 0.52
17 3 0.11
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (15 bp):
AATAAAAAAATTAAA
Found at i:16209486 original size:70 final size:70
Alignment explanation
Indices: 16209386--16209526 Score: 185
Period size: 70 Copynumber: 2.0 Consensus size: 70
16209376 ACCACCTTAT
* *
16209386 TGGCTAGCTTGGTAGGTAAGGGCCTAGCTAGTATAAAATGAGTAACTTTTAGGCACATGTGGAGT
1 TGGCTAGCTTGGTAGGTAAGGGCCTAGCTAGTATAAAATGAGCAACTTCTAGGCACATGTGGAGT
*
16209451 TTAGG
66 CTAGG
* * * * * *
16209456 TGGCTAGCTTGGTAGG-CAGGAGCCTGGCTAGTCTGAAGTGAGCAACTTCTAGGCACATGTGGTG
1 TGGCTAGCTTGGTAGGTAAGG-GCCTAGCTAGTATAAAATGAGCAACTTCTAGGCACATGTGGAG
16209520 TCTAGG
65 TCTAGG
16209526 T
1 T
16209527 AGGCAGGCTT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
69 3 0.05
70 58 0.95
ACGTcount: A:0.23, C:0.15, G:0.33, T:0.28
Consensus pattern (70 bp):
TGGCTAGCTTGGTAGGTAAGGGCCTAGCTAGTATAAAATGAGCAACTTCTAGGCACATGTGGAGT
CTAGG
Found at i:16216144 original size:67 final size:67
Alignment explanation
Indices: 16216073--16216235 Score: 197
Period size: 67 Copynumber: 2.4 Consensus size: 67
16216063 TTTTCTTCAA
* * * *
16216073 TTTAAAACTAATATTTATCTATTAATTGTGT-TTTCTTGACTTTCTTTACCCTTTCATTTTCTTT
1 TTTAAAAATAATATTTATCTATTAATTGTATATAT-TTGACTCTCTTTA-CCTTTCATTTTCTTT
16216137 TA-T
64 TAGT
* * ** *
16216140 TTTAAAAATAATATTTAT-TAATTAATTGTATATATTTGGCTCTCTTTATCTTTTTTTTTTTTTT
1 TTTAAAAATAATATTTATCT-ATTAATTGTATATATTTGACTCTCTTTACCTTTCATTTTCTTTT
16216204 AGT
65 AGT
16216207 TTTAAAAATAATATTTATCTATTAATTGT
1 TTTAAAAATAATATTTATCTATTAATTGT
16216236 TATCATTGCT
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
66 14 0.17
67 66 0.80
68 3 0.04
ACGTcount: A:0.28, C:0.09, G:0.05, T:0.58
Consensus pattern (67 bp):
TTTAAAAATAATATTTATCTATTAATTGTATATATTTGACTCTCTTTACCTTTCATTTTCTTTTA
GT
Found at i:16218000 original size:22 final size:22
Alignment explanation
Indices: 16217967--16218020 Score: 90
Period size: 22 Copynumber: 2.4 Consensus size: 22
16217957 TTAATTATTT
*
16217967 ATATATTTATATTTTAAACAATA
1 ATAT-TTTATATTTTAAAAAATA
16217990 ATATTTTATATTTTAAAAAATA
1 ATATTTTATATTTTAAAAAATA
16218012 ATATTTTAT
1 ATATTTTAT
16218021 TAATTTCAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 26 0.87
23 4 0.13
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
ATATTTTATATTTTAAAAAATA
Found at i:16219477 original size:3 final size:3
Alignment explanation
Indices: 16219466--16219509 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
16219456 AAGAAAAAAA
*
16219466 AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16219510 ATCCAAATCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16221554 original size:23 final size:21
Alignment explanation
Indices: 16221500--16221599 Score: 125
Period size: 23 Copynumber: 4.7 Consensus size: 21
16221490 AAACCCTTTC
*
16221500 TTTTCTTTTTGTTTTG-TTTCA
1 TTTT-TTTTTGTTTTGTTTTTA
16221521 --TTTTTTTGTTTTGTTTTTA
1 TTTTTTTTTGTTTTGTTTTTA
16221540 TTTTTTTATTGGTTTTGTTTTTA
1 TTTTTTT-TT-GTTTTGTTTTTA
16221563 TTTTTTTATTGGTTTTGTTTTTA
1 TTTTTTT-TT-GTTTTGTTTTTA
16221586 TTTTTTTTTGTTTT
1 TTTTTTTTTGTTTT
16221600 CATAAGTCAA
Statistics
Matches: 73, Mismatches: 1, Indels: 10
0.87 0.01 0.12
Matches are distributed among these distances:
18 11 0.15
19 6 0.08
21 10 0.14
22 4 0.05
23 42 0.58
ACGTcount: A:0.06, C:0.02, G:0.11, T:0.81
Consensus pattern (21 bp):
TTTTTTTTTGTTTTGTTTTTA
Found at i:16221727 original size:35 final size:35
Alignment explanation
Indices: 16221688--16223916 Score: 626
Period size: 35 Copynumber: 63.6 Consensus size: 35
16221678 TTGAAGAATA
16221688 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* ** * * *
16221723 AAAATAATTGGGAATAAACCATGAGTTGAGTTAAAGAATA
1 AAAATGATAAGGATTAAACCATGAG-TCA---AAAG-ATG
* * * * *
16221763 AAAATGATTGAA--ATTGAATCACGAGTCAAAAAATA
1 AAAATGA-T-AAGGATTAAACCATGAGTCAAAAGATG
* * * * * * *
16221798 AAAACGACCAA-GAGTAAATCATGAGT-TAGAGAATA
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAG-ATG
* * * *
16221833 AAAATGATTAGGATTAAACCATGGGTTAAAAAATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * * ** *
16221868 AAAACGACCAA-GATTAAATCACAAGTCAAAAAATG
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
** *** * * *
16221903 AAAACAACCGGGATTAAACCACGAATCAAAATATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * * *
16221938 AAAATGACCAA-AATTAAATCGCA--AG-CCAGAGAATG
1 AAAATGA-TAAGGATTAAA-C-CATGAGTCAAAAG-ATG
** * * *
16221973 AAAACAATCAGGATTAAATCATGAGTCAGAAGATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * * *
16222008 AAAATGACT-GGGATTAAACTATGAGT-AAGAGAATA
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAG-ATG
* * * * *
16222043 AAAATGATGAGGATTAAACCACGAATCAAAAAATA
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
** *
16222078 AAAATGACCAGGATTAAACCATGAGTCAAAAAATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * * * *
16222113 AAAACGATCAA-GATTAAATCACGAATCAGAAGATG
1 AAAATGAT-AAGGATTAAACCATGAGTCAAAAGATG
* * *
16222148 AAAACGATCAA-GATT-AACCACGAGTCAAAAAATG
1 AAAATGAT-AAGGATTAAACCATGAGTCAAAAGATG
** * * *
16222182 AAAATGATTGGGATTAAATCATGAATCAAAATATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * *
16222217 AAAATGACCAA-GATTAAACAATGAGTC-AGAGAAT-
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAG-ATG
* * * * *
16222251 ATAAATAACT-AGAATTAAACCATGAATAAAAAAATG
1 A-AAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
** **
16222287 AAAACAATAA-GATTAAACCACAAGTCAGAAA-ATG
1 AAAATGATAAGGATTAAACCATGAGTCA-AAAGATG
* * *
16222321 AAAACGAT-CGAGATTAAACCATGAATCAAAAGATG
1 AAAATGATAAG-GATTAAACCATGAGTCAAAAGATG
** * *
16222356 AAAATGATCGGGATTAAACTATGAGTCAAAAGATA
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * *
16222391 AAAATGATCAGGATTAAACTATGAGTCAAAAAATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * *
16222426 AAAATGACT-GGGATTAAACCACGAGTC-AGAGAATG
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAG-ATG
** * *
16222461 AAAATGATTGGGATTAAACCATGAGTTAGAAGATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* ** * **
16222496 AAAACGATTGGGATTAAACCATGAGTC-AGAGAAA
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * *
16222530 AAAATAACAATAGAGATTAAACCAT-AGGTCAAAAAATG
1 AAAATGA-TA-AG-GATTAAACCATGA-GTCAAAAGATG
* * *
16222568 AAAATGATAGGGATTAAACCATAAGTC-AGAGA--
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * *
16222600 AACAATGATGACCGAGATTAAACTATGAGTTAGAAA-ATG
1 AA-AATGAT-A-AG-GATTAAACCATGAGTCA-AAAGATG
* *
16222639 AAAATGACT--GGATTAAACCATGAGTC-AGAGAATA
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAG-ATG
** ** * * *
16222673 AAAACAACT-AGGATTAAACCACAAGT-TAGAGAATA
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAG-ATG
** * *
16222708 AAAATGACCAGGATTAAACTATGAGTCAGAAA-ATA
1 AAAATGATAAGGATTAAACCATGAGTCA-AAAGATG
* *
16222743 AAAATGACT--GGATTAAACCATGAATTAGAAA-ATG
1 AAAATGA-TAAGGATTAAACCATGAGTCA-AAAGATG
** * * *
16222777 AAAATGACT-AGGATTAAACCACAAATTAGAAGATG
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
* * * ** * *
16222812 AAAACGATCAGGATTAAACTAAAAGTCTACAA-ATA
1 AAAATGATAAGGATTAAACCATGAGTC-AAAAGATG
* ** * *
16222847 AAAATGACTGA-GATTAAACTGTGAGT-TAGAGAATG
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAG-ATG
*
16222882 AAAATGAT-TGAGATTAAACCATGAGTCAAAAGATG
1 AAAATGATAAG-GATTAAACCATGAGTCAAAAGATG
* *
16222917 AAAATGACT-AGGATTAAACCATGAGTC-AGAGA-A
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
* * * *
16222950 AAAATGATGATCAAGATTAAATCGTAAGTCAAAA-ATG
1 AAAATGAT-A--AGGATTAAACCATGAGTCAAAAGATG
*** * * * *
16222987 AAAAT-AGCGGGGATTAAACCACGAATTAGAAGATG
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
** *
16223022 AAAATGATCAA-GATTAAACCACAAATCAGAAA-ATG
1 AAAATGAT-AAGGATTAAACCATGAGTCA-AAAGATG
** *
16223057 AAAATGATCGGGATTAAACCATGAGTC-AGAGAATG
1 AAAATGATAAGGATTAAACCATGAGTCAAAAG-ATG
* *
16223092 AAAATAATTAA-GATTAAATCA-GAGTCAAAAGATG
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
* * * *
16223126 AAAATAATCAA-GATTAAACCATTAGTC-AGAGA-A
1 AAAATGAT-AAGGATTAAACCATGAGTCAAAAGATG
* * *
16223159 AAAATGATGACCAAGATTAAACCATGAGTC-AGAGA-A
1 AAAATGAT-A--AGGATTAAACCATGAGTCAAAAGATG
* **
16223195 AAAATGACAACAGGGATTAAACCACAAGTCAAAA-ATG
1 AAAATGA-TA-A-GGATTAAACCATGAGTCAAAAGATG
* * *
16223232 AAAA-CA-ACTGGATTAAACCACGAGTCAGACAA-AT-
1 AAAATGATA-AGGATTAAACCATGAGTCA-A-AAGATG
* * * * *
16223266 -AAAT-ACAACTGAGATTAAGCTACGAGTCAAAAAATG
1 AAAATGATAA--G-GATTAAACCATGAGTCAAAAGATG
* * * *
16223302 AAAAGGACTAA-GATTAAACCACGAATCGAAAGATG
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
** * * *
16223337 AAAACAATCAA-AATTAAACCACGAGTTAGAAA-ATG
1 AAAATGAT-AAGGATTAAACCATGAGTCA-AAAGATG
* ** * *
16223372 AAAATAACCAGGATTAAACTATGAGTC-AAAGAATA
1 AAAATGATAAGGATTAAACCATGAGTCAAAAG-ATG
** * * *
16223407 AAAACAAT-CGAGCTTAAATCATGAGTCAAAAGATG
1 AAAATGATAAG-GATTAAACCATGAGTCAAAAGATG
* * *
16223442 AAAATGATAGGGATTAAACCACGAGTTAGGAAA-A--
1 AAAATGATAAGGATTAAACCATGAGTCA--AAAGATG
* * * * *
16223476 AATGATGACAAGGATTAAACCATGAATTAAAAAATG
1 AA-AATGATAAGGATTAAACCATGAGTCAAAAGATG
* * * *
16223512 AAAATGACT--GTGATTAAACTACGAGTC-AGAGAATA
1 AAAATGA-TAAG-GATTAAACCATGAGTCAAAAG-ATG
** * * *
16223547 AAAATGACCAGGATTAATCTATGAGTCAGAAA-ATA
1 AAAATGATAAGGATTAAACCATGAGTCA-AAAGATG
* * * *
16223582 AAAATGACT-AGAATTAAA-CTTCGAGCCAAAAAATG
1 AAAATGA-TAAGGATTAAACCAT-GAGTCAAAAGATG
* * * *
16223617 AAAACGACT-AGGATTAAACCA-CAATCAAAAGATA
1 AAAATGA-TAAGGATTAAACCATGAGTCAAAAGATG
* * * * *
16223651 AAAATAATTAGGATTAAACCATAAGTCAAAAAATA
1 AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
* * *
16223686 AAAATGAT-CGAGATTACACCACGAGTCAAAAGATG
1 AAAATGATAAG-GATTAAACCATGAGTCAAAAGATG
* * * *
16223721 AAAATGAT-TGAGATTAAATCATGAGTC-AGAGA-A
1 AAAATGATAAG-GATTAAACCATGAGTCAAAAGATG
* * * *
16223754 AAAATGACAACCAAGTTTAAACCACGAGTCAGAAA-ATG
1 AAAATGA-TA--AGGATTAAACCATGAGTCA-AAAGATG
* * *
16223792 AAAATGACT-GGGATTAAACCATAAGTCAAACA-ATA
1 AAAATGA-TAAGGATTAAACCATGAGTCAAA-AGATG
* ** *
16223827 AAAATGATCAA-GATTAAATCACAAGTTAAAAGATG
1 AAAATGAT-AAGGATTAAACCATGAGTCAAAAGATG
* * * * *
16223862 AAAACGACTGAGG-TTAAACCACGAATTAGAAA-ATG
1 AAAATGA-TAAGGATTAAACCATGAGTCA-AAAGATG
* *
16223897 AAAACGATTAGGATTAAACC
1 AAAATGATAAGGATTAAACC
16223917 GTGGATCAAA
Statistics
Matches: 1649, Mismatches: 387, Indels: 316
0.70 0.16 0.13
Matches are distributed among these distances:
32 5 0.00
33 62 0.04
34 246 0.15
35 1075 0.65
36 163 0.10
37 42 0.03
38 27 0.02
39 11 0.01
40 17 0.01
41 1 0.00
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (35 bp):
AAAATGATAAGGATTAAACCATGAGTCAAAAGATG
Found at i:16223041 original size:245 final size:241
Alignment explanation
Indices: 16222264--16223254 Score: 720
Period size: 245 Copynumber: 4.0 Consensus size: 241
16222254 AATAACTAGA
* * * * * *
16222264 ATTAAACCATGAATAAAAAAATGAAAA-CAATAAGATTAAACCACAAGTCAGAAAATGAAAACGA
1 ATTAAACCACGAATTAGAAAATGAAAATGACTAAGATTAAACCACAAATCAGAAAATGAAAACGA
* * * * *
16222328 TC-GAGATTAAACCATGAA-TCA-AAAGATGAAAATGA-TCGGGATTAAACTATGAGTCA-AAAG
66 TCAG-GATTAAACCA-AAAGTCACAGA-ATAAAAATGACT-GAGATTAAACTATGAGTTAGAAA-
* * * * * * * *
16222388 ATAAAAATGA-TCAGGATTAAACTATGAGTCAAAAAATGAAAATGACTGGGATTAAACCACGAGT
126 ATGAAAATGATTGA-GATTAAACCATGAGTC-AGAGATAAAAATGACTAGGATTAAACCATGAGT
* * * * *
16222452 CAGAGAATGAAAATGATTG----GGATTAAACCATGAGTTAGAAGATGAAAA-CGATTGGG
189 CAGAGAA--AAAATGA-TGAACAGGATTAAA-C-TAAGTCA-AAAATGAAAATAG-CT-GG
* * * * * ** *
16222508 ATTAAACCATGAGTCAGAGAAA--AAAATAACAATAGAGATTAAACCATAGGTCAAAAAATGAAA
1 ATTAAACCACGAATTAGA-AAATGAAAATGAC--TA-AGATTAAACCACAAATCAGAAAATGAAA
* * * * *
16222571 ATGAT-AGGGATTAAACCATAAGTCAGAGAA-ACAATGATGACCGAGATTAAACTATGAGTTAGA
62 ACGATCA-GGATTAAACCAAAAGTCACAGAATA-AA-AATGACTGAGATTAAACTATGAGTTAGA
* ** **
16222634 AAATGAAAATGACTG-GATTAAACCATGAGTCAGAGAATAAAAACAACTAGGATTAAACCACAAG
124 AAATGAAAATGATTGAGATTAAACCATGAGTCAGAG-ATAAAAATGACTAGGATTAAACCATGAG
* * *
16222698 TTAGAGAATAAAA--ATGACCAGGATTAAACTATGAGTCAGAAAATAAAAAT-GACTGG
188 TCAGAGAA-AAAATGATGAACAGGATTAAACTA--AGTCA-AAAATGAAAATAG-CTGG
* * * *
16222754 ATTAAACCATGAATTAGAAAATGAAAATGACTAGGATTAAACCACAAATTAGAAGATGAAAACGA
1 ATTAAACCACGAATTAGAAAATGAAAATGACTAAGATTAAACCACAAATCAGAAAATGAAAACGA
* * *
16222819 TCAGGATTAAACTAAAAGTCTACA-AATAAAAATGACTGAGATTAAACTGTGAGTTAGAGAATGA
66 TCAGGATTAAACCAAAAGTC-ACAGAATAAAAATGACTGAGATTAAACTATGAGTTAGAAAATGA
* *
16222883 AAATGATTGAGATTAAACCATGAGTCAAAAGATGAAAATGACTAGGATTAAACCATGAGTCAGAG
130 AAATGATTGAGATTAAACCATGAGTC-AGAGATAAAAATGACTAGGATTAAACCATGAGTCAGAG
* * *
16222948 AAAAAATGATGATCAAGATTAAATCGTAAGTCAAAAATGAAAATAGCGGGG
194 AAAAAATGATGAACAGGATTAAA-C-TAAGTCAAAAATGAAAATAGC-TGG
* *
16222999 ATTAAACCACGAATTAGAAGATGAAAATGA-TCAAGATTAAACCACAAATCAGAAAATGAAAATG
1 ATTAAACCACGAATTAGAAAATGAAAATGACT-AAGATTAAACCACAAATCAGAAAATGAAAACG
* ** * * * * * *
16223063 ATCGGGATTAAACCATGAGTCAGAGAATGAAAATAATTAAGATTAAA-TCA-GAGTCA-AAAGAT
65 ATCAGGATTAAACCAAAAGTCACAGAATAAAAATGACTGAGATTAAACT-ATGAGTTAGAAA-AT
* ** * * * *
16223125 GAAAATAATCAAGATTAAACCATTAGTCAGAGAAAAAATGATGACCAAGATTAAACCATGAGTCA
128 GAAAATGATTGAGATTAAACCATGAGTCAGAGATAAAA--ATGACTAGGATTAAACCATGAGTCA
* * * *
16223190 GAGAAAAAATGA-CAACAGGGATTAAACCACAAGTCAAAAATGAAAACAACTGG
191 GAGAAAAAATGATGAACA-GGATTAAA-C-TAAGTCAAAAATGAAAATAGCTGG
16223243 ATTAAACCACGA
1 ATTAAACCACGA
16223255 GTCAGACAAA
Statistics
Matches: 606, Mismatches: 99, Indels: 84
0.77 0.13 0.11
Matches are distributed among these distances:
243 57 0.09
244 170 0.28
245 189 0.31
246 30 0.05
247 123 0.20
248 33 0.05
249 4 0.01
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.20
Consensus pattern (241 bp):
ATTAAACCACGAATTAGAAAATGAAAATGACTAAGATTAAACCACAAATCAGAAAATGAAAACGA
TCAGGATTAAACCAAAAGTCACAGAATAAAAATGACTGAGATTAAACTATGAGTTAGAAAATGAA
AATGATTGAGATTAAACCATGAGTCAGAGATAAAAATGACTAGGATTAAACCATGAGTCAGAGAA
AAAATGATGAACAGGATTAAACTAAGTCAAAAATGAAAATAGCTGG
Found at i:16223225 original size:36 final size:36
Alignment explanation
Indices: 16223136--16223294 Score: 125
Period size: 36 Copynumber: 4.5 Consensus size: 36
16223126 AAAATAATCA
** * *
16223136 AGATTAAACCATTAGTCAGAGAAA-AAATGATGACCA-
1 AGATTAAACCACGAGTCAGAGAAATAAAT-A-CAACAG
*
16223172 AGATTAAACCATGAGTCAGAGAAA-AAATGACAACAG
1 AGATTAAACCACGAGTCAGAGAAATAAAT-ACAACAG
* * *
16223208 GGATTAAACCACAAGTCA-A-AAATGAAA-ACAACTG
1 AGATTAAACCACGAGTCAGAGAAAT-AAATACAACAG
* *
16223242 -GATTAAACCACGAGTCAGACAAATAAATACAACTG
1 AGATTAAACCACGAGTCAGAGAAATAAATACAACAG
* *
16223277 AGATTAAGCTACGAGTCA
1 AGATTAAACCACGAGTCA
16223295 AAAAATGAAA
Statistics
Matches: 106, Mismatches: 10, Indels: 14
0.82 0.08 0.11
Matches are distributed among these distances:
33 16 0.15
34 13 0.12
35 15 0.14
36 62 0.58
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.17
Consensus pattern (36 bp):
AGATTAAACCACGAGTCAGAGAAATAAATACAACAG
Found at i:16224487 original size:18 final size:19
Alignment explanation
Indices: 16224466--16224507 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
16224456 GCAAATGTTG
*
16224466 ATGCGAATGT-GAATATCA
1 ATGCAAATGTAGAATATCA
*
16224484 ATGCAAATGTAAGAATATGA
1 ATGCAAATGT-AGAATATCA
16224504 ATGC
1 ATGC
16224508 TTAATACAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 9 0.45
20 11 0.55
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (19 bp):
ATGCAAATGTAGAATATCA
Found at i:16224847 original size:34 final size:34
Alignment explanation
Indices: 16224796--16225116 Score: 187
Period size: 34 Copynumber: 9.6 Consensus size: 34
16224786 TATCGAGGGA
* *
16224796 GCCAACTAATCTAGGCTTAAATATTTCTTTAAAG
1 GCCAGCTAATCTGGGCTTAAATATTTCTTTAAAG
* * **
16224830 GCCAGCTAATCTGGGCTT--ACA-TTCATTGGAG
1 GCCAGCTAATCTGGGCTTAAATATTTCTTTAAAG
* * * *
16224861 G-TAGCTAATCTAGGCTCAAATCTTTCTTTGAAA-
1 GCCAGCTAATCTGGGCTTAAATATTTCTTT-AAAG
* * *
16224894 GCTAGCTAATCTGGGCTTAAATCTTTTCTTGAAA-
1 GCCAGCTAATCTGGGCTTAAAT-ATTTCTTTAAAG
* * * * * *
16224928 GCCAACTAATATGGGCTT-TATATTTCATTGATG
1 GCCAGCTAATCTGGGCTTAAATATTTCTTTAAAG
* * *
16224961 ACCAGCTAATTTGGGCTTAAATCTTTCTTTAAAG
1 GCCAGCTAATCTGGGCTTAAATATTTCTTTAAAG
* * * *
16224995 GCCAACTAATCTAGGCTT-AATATTTCATT-AGG
1 GCCAGCTAATCTGGGCTTAAATATTTCTTTAAAG
** * ** *
16225027 GACCAATTAATTTGGGCTT-AATATTTAATCAGAA-
1 G-CCAGCTAATCTGGGCTTAAATATTTCTTTA-AAG
** * *
16225061 GTTAGCTAATCTGGGCTTAAATCTTTCTTTGAAG
1 GCCAGCTAATCTGGGCTTAAATATTTCTTTAAAG
* *
16225095 GCTAGCTAATCTAGGCTTAAAT
1 GCCAGCTAATCTGGGCTTAAAT
16225117 TTTGTATCAT
Statistics
Matches: 214, Mismatches: 60, Indels: 26
0.71 0.20 0.09
Matches are distributed among these distances:
30 13 0.06
31 8 0.04
32 12 0.06
33 69 0.32
34 105 0.49
35 7 0.03
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (34 bp):
GCCAGCTAATCTGGGCTTAAATATTTCTTTAAAG
Found at i:16224977 original size:67 final size:67
Alignment explanation
Indices: 16224897--16225047 Score: 198
Period size: 67 Copynumber: 2.3 Consensus size: 67
16224887 TTTGAAAGCT
* * * *
16224897 AGCTAATCTGGGCTTAAATCTTTTCTTGAAA-GCCAACTAATATGGGCTTTATATTTCATT-GAT
1 AGCTAATTTGGGCTTAAATC-TTTCTTGAAAGGCCAACTAATATAGGCTTAATATTTCATTAG-G
16224960 GACC
64 GACC
* *
16224964 AGCTAATTTGGGCTTAAATCTTTCTTTAAAGGCCAACTAATCTAGGCTTAATATTTCATTAGGGA
1 AGCTAATTTGGGCTTAAATCTTTCTTGAAAGGCCAACTAATATAGGCTTAATATTTCATTAGGGA
16225029 CC
66 CC
**
16225031 AATTAATTTGGGCTTAA
1 AGCTAATTTGGGCTTAA
16225048 TATTTAATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
66 9 0.12
67 64 0.86
68 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (67 bp):
AGCTAATTTGGGCTTAAATCTTTCTTGAAAGGCCAACTAATATAGGCTTAATATTTCATTAGGGA
CC
Found at i:16225047 original size:33 final size:33
Alignment explanation
Indices: 16224929--16225052 Score: 117
Period size: 33 Copynumber: 3.7 Consensus size: 33
16224919 TTCTTGAAAG
* * *
16224929 CCAACTAATATGGGCTTTATATTTCATT-GATGA
1 CCAACTAATTTGGGCTTAATATTTCATTAG-GGA
* * * *
16224962 CCAGCTAATTTGGGCTTAAATCTTTCTTTAAAGG-
1 CCAACTAATTTGGGCTT-AATATTTCATT-AGGGA
* *
16224996 CCAACTAATCTAGGCTTAATATTTCATTAGGGA
1 CCAACTAATTTGGGCTTAATATTTCATTAGGGA
*
16225029 CCAATTAATTTGGGCTTAATATTT
1 CCAACTAATTTGGGCTTAATATTT
16225053 AATCAGAAGT
Statistics
Matches: 71, Mismatches: 16, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
32 3 0.04
33 45 0.63
34 22 0.31
35 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (33 bp):
CCAACTAATTTGGGCTTAATATTTCATTAGGGA
Found at i:16225646 original size:25 final size:26
Alignment explanation
Indices: 16225612--16225671 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
16225602 GATGTAAGCA
**
16225612 ATGCAAATGCAAAT-TTTTTTTCATG
1 ATGCAAATGCAAATGCCTTTTTCATG
16225637 ATGCAAATGCAAATGCCTTTTTCATG
1 ATGCAAATGCAAATGCCTTTTTCATG
16225663 ATGCAAATG
1 ATGCAAATG
16225672 TGCAGGCTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 14 0.44
26 18 0.56
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (26 bp):
ATGCAAATGCAAATGCCTTTTTCATG
Found at i:16226988 original size:11 final size:10
Alignment explanation
Indices: 16226968--16227025 Score: 53
Period size: 11 Copynumber: 5.2 Consensus size: 10
16226958 CATTCATTTC
16226968 TTTTCTTTTT
1 TTTTCTTTTT
16226978 TTTTCCTTTTT
1 TTTT-CTTTTT
16226989 TCTTTCATTTCATT
1 T-TTTC-TTT--TT
*
16227003 TTTTCTTCGTT
1 TTTTCTT-TTT
16227014 TTTTCTTTTT
1 TTTTCTTTTT
16227024 TT
1 TT
16227026 CCTTCTTTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
10 8 0.20
11 17 0.43
12 8 0.20
13 4 0.10
14 3 0.08
ACGTcount: A:0.03, C:0.16, G:0.02, T:0.79
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:16227004 original size:28 final size:27
Alignment explanation
Indices: 16226964--16227021 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
16226954 CACCCATTCA
* * *
16226964 TTTCTTTTCTTTTTTTTTCCTTTTTTC
1 TTTCATTTCATTTTTTCTCCTTTTTTC
*
16226991 TTTCATTTCATTTTTTCTTCGTTTTTTC
1 TTTCATTTCATTTTTTC-TCCTTTTTTC
16227019 TTT
1 TTT
16227022 TTTTCCTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (27 bp):
TTTCATTTCATTTTTTCTCCTTTTTTC
Found at i:16227035 original size:35 final size:35
Alignment explanation
Indices: 16226968--16227035 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
16226958 CATTCATTTC
* *
16226968 TTTTCTTTTTTTTTCCTTTTTTCTTTCATTTCATT
1 TTTTCTTGTTTTTTCCTTTTTTCCTTCATTTCATT
*
16227003 TTTTCTTCGTTTTTTCTTTTTTTCCTTC-TTTCA
1 TTTTCTT-GTTTTTTCCTTTTTTCCTTCATTTCA
16227036 CTCAGTGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 12 0.41
36 17 0.59
ACGTcount: A:0.04, C:0.19, G:0.01, T:0.75
Consensus pattern (35 bp):
TTTTCTTGTTTTTTCCTTTTTTCCTTCATTTCATT
Found at i:16228424 original size:2 final size:2
Alignment explanation
Indices: 16228417--16228444 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
16228407 ATGAGGGTTT
16228417 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
16228445 GTAATCACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:16229516 original size:20 final size:21
Alignment explanation
Indices: 16229488--16229530 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
16229478 TAAAAAATGT
16229488 ATGTAAAAGAT-CAAATGAAA
1 ATGTAAAAGATCCAAATGAAA
* *
16229508 ATGTGAAAGATCCAAATTAAA
1 ATGTAAAAGATCCAAATGAAA
16229529 AT
1 AT
16229531 TCTTTTTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.56, C:0.07, G:0.14, T:0.23
Consensus pattern (21 bp):
ATGTAAAAGATCCAAATGAAA
Found at i:16238236 original size:42 final size:41
Alignment explanation
Indices: 16238152--16238242 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 41
16238142 AAAAATTCCC
* *
16238152 AAAAAAACAAAATTAAGATTAAAAATAAAATTAAACCCAAAA
1 AAAAAAATAAAATTAAGATTAAAAATAAAA-TAAAACCAAAA
* * *
16238194 AATAAAATAAAATTAAGATT-AAAATTAAATCAAAACTAAAA
1 AAAAAAATAAAATTAAGATTAAAAATAAAAT-AAAACCAAAA
16238235 AAAAAAAT
1 AAAAAAAT
16238243 TGTTTGGGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
40 1 0.02
41 23 0.55
42 18 0.43
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.20
Consensus pattern (41 bp):
AAAAAAATAAAATTAAGATTAAAAATAAAATAAAACCAAAA
Found at i:16238355 original size:3 final size:3
Alignment explanation
Indices: 16238347--16238379 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
16238337 TGAAATATTT
16238347 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
16238380 TATTAAATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16241179 original size:28 final size:28
Alignment explanation
Indices: 16241139--16241194 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
16241129 ATAAATATTA
16241139 GACAATAAAAAAATTATTATGTTTTATG
1 GACAATAAAAAAATTATTATGTTTTATG
16241167 GACAATAAAAAAATTATTATGTTTTATG
1 GACAATAAAAAAATTATTATGTTTTATG
16241195 TAATAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (28 bp):
GACAATAAAAAAATTATTATGTTTTATG
Found at i:16242280 original size:26 final size:29
Alignment explanation
Indices: 16242223--16242277 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
16242213 AACATTTTAA
* * *
16242223 TATTTTAATAATAATTAGTAGTATATTAT
1 TATTTTAATAATAAATAATAGAATATTAT
16242252 TATTTTAATAATAAATAATA-AATATT
1 TATTTTAATAATAAATAATAGAATATT
16242278 TATATAGTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (29 bp):
TATTTTAATAATAAATAATAGAATATTAT
Found at i:16242280 original size:29 final size:28
Alignment explanation
Indices: 16242218--16242280 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
16242208 ATTTTAACAT
* * * *
16242218 TTTAATATTTTAATAATAATTAGTAGTA
1 TTTATTATTTTAATAATAAATAATAATA
16242246 TATTATTATTTTAATAATAAATAATAAATA
1 T-TTATTATTTTAATAATAAATAAT-AATA
16242276 TTTAT
1 TTTAT
16242281 ATAGTACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 1 0.03
29 24 0.83
30 4 0.14
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
TTTATTATTTTAATAATAAATAATAATA
Found at i:16242703 original size:32 final size:31
Alignment explanation
Indices: 16242633--16242703 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 31
16242623 GATTTTCCGA
*
16242633 AAAC-ATCCAAACACCAAAAAAATTTTTTTAT
1 AAACTATCCAAACA-CAAAAAAATTTTTTTAG
*
16242664 AAGACTATCCAAACA-ACAAAAATTATTTTTAGG
1 AA-ACTATCCAAACACAAAAAAATT-TTTTTA-G
16242697 AAACTAT
1 AAACTAT
16242704 TTTCAATGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
31 10 0.29
32 13 0.38
33 11 0.32
ACGTcount: A:0.51, C:0.17, G:0.04, T:0.28
Consensus pattern (31 bp):
AAACTATCCAAACACAAAAAAATTTTTTTAG
Found at i:16242793 original size:2 final size:2
Alignment explanation
Indices: 16242786--16242820 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
16242776 GATTCGGATA
*
16242786 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16242821 AAAGATAGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:16243710 original size:19 final size:20
Alignment explanation
Indices: 16243682--16243732 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 20
16243672 TTATTAAAAA
*
16243682 TATGAAAAAAATTTTA-TAT
1 TATGATAAAAATTTTATTAT
*
16243701 TATGAT-AAAACTTTATTAT
1 TATGATAAAAATTTTATTAT
*
16243720 TA-CATAAAAATTT
1 TATGATAAAAATTT
16243733 ATTGTTACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (20 bp):
TATGATAAAAATTTTATTAT
Found at i:16243735 original size:18 final size:18
Alignment explanation
Indices: 16243705--16243743 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
16243695 TTATATTATG
*
16243705 ATAAAACTTTATTATTAC
1 ATAAAAATTTATTATTAC
*
16243723 ATAAAAATTTATTGTTAC
1 ATAAAAATTTATTATTAC
16243741 ATA
1 ATA
16243744 TATTATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (18 bp):
ATAAAAATTTATTATTAC
Found at i:16246439 original size:40 final size:41
Alignment explanation
Indices: 16246352--16246441 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 41
16246342 ATTTTATTTT
* * *
16246352 TTCATATTTTCAATAAAAATTACATTTTTTATTTTAAAGAA
1 TTCATCTTTTCAATAAAAAGTACATTTTTTATCTTAAAGAA
* * *
16246393 TACATCTTTTCAATAAAAAGTATA-TTTTTATCTTAGA-AA
1 TTCATCTTTTCAATAAAAAGTACATTTTTTATCTTAAAGAA
16246432 TGTCATCTTT
1 T-TCATCTTT
16246442 ATTAAATTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.07
40 18 0.44
41 20 0.49
ACGTcount: A:0.38, C:0.10, G:0.04, T:0.48
Consensus pattern (41 bp):
TTCATCTTTTCAATAAAAAGTACATTTTTTATCTTAAAGAA
Found at i:16246477 original size:72 final size:73
Alignment explanation
Indices: 16246399--16246574 Score: 241
Period size: 72 Copynumber: 2.4 Consensus size: 73
16246389 AGAATACATC
* * * *
16246399 TTTTCAATAAAAAGTATATTTTTATCTTAGAAATGTCATCT-TTATTAAATTAT-AAAAAATATA
1 TTTTCAATAAAAACTATGTTTTTAACTTAGAAATATCAT-TATTATTAAATTATAAAAAAATATA
*
16246462 TTTTTCATG
65 GTTTTCATG
* * *
16246471 TTTTCAATAAAAACTATGTTTTTAACTTAGAAATATCGTTATTATTGAATTTTAAAAAAATATAG
1 TTTTCAATAAAAACTATGTTTTTAACTTAGAAATATCATTATTATTAAATTATAAAAAAATATAG
16246536 TTTTCATG
66 TTTTCATG
*
16246544 -TTTCAACAAAAACTATGTTTTTAACTTAGAA
1 TTTTCAATAAAAACTATGTTTTTAACTTAGAA
16246575 TCGTTGTCTT
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 1 0.01
72 74 0.80
73 18 0.19
ACGTcount: A:0.40, C:0.08, G:0.07, T:0.45
Consensus pattern (73 bp):
TTTTCAATAAAAACTATGTTTTTAACTTAGAAATATCATTATTATTAAATTATAAAAAAATATAG
TTTTCATG
Found at i:16246709 original size:41 final size:41
Alignment explanation
Indices: 16246664--16246745 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
16246654 AATTTTTATT
* * *
16246664 ATATTTTTAACAAATATTACATTTTTTATATTAAAAACATC
1 ATATTTTAAACAAAGATTACATTTTCTATATTAAAAACATC
* * * *
16246705 ATATTTTAAATAAAGATTATATTTTCTATTTTAGAAACATC
1 ATATTTTAAACAAAGATTACATTTTCTATATTAAAAACATC
16246746 GTTTTTGTTG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.46
Consensus pattern (41 bp):
ATATTTTAAACAAAGATTACATTTTCTATATTAAAAACATC
Found at i:16246959 original size:74 final size:74
Alignment explanation
Indices: 16246839--16246981 Score: 207
Period size: 74 Copynumber: 1.9 Consensus size: 74
16246829 GAATATGTTC
* ** *
16246839 TTTATATTAAAAATATTGTTTTTGTTAAATTCTGAAAAATAATTTTTTTTGTATTTTTAACAAAA
1 TTTATATTAAAAATATTGTTTTTGTTAAATTATGAAAAATAATTTTTTTCATATTTTCAACAAAA
16246904 ATCACATTT
66 ATCACATTT
* * *
16246913 TTTAT-TTAAAAAATGTTGTTTTTGTTGAATTATGAAAAATAATTTTTTTCATCTTTTCAACAAA
1 TTTATATT-AAAAATATTGTTTTTGTTAAATTATGAAAAATAATTTTTTTCATATTTTCAACAAA
16246977 AATCA
65 AATCA
16246982 TGTTTTTAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
73 2 0.03
74 59 0.97
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (74 bp):
TTTATATTAAAAATATTGTTTTTGTTAAATTATGAAAAATAATTTTTTTCATATTTTCAACAAAA
ATCACATTT
Found at i:16249586 original size:17 final size:18
Alignment explanation
Indices: 16249564--16249599 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
16249554 TTGATTTGTT
*
16249564 AAATAAATAAAT-AAAAA
1 AAATAAAAAAATGAAAAA
16249581 AAATAAAAAAATGAAAAA
1 AAATAAAAAAATGAAAAA
16249599 A
1 A
16249600 GAAAATCGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (18 bp):
AAATAAAAAAATGAAAAA
Found at i:16250376 original size:13 final size:13
Alignment explanation
Indices: 16250348--16250396 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 13
16250338 TGAGCTGATT
*
16250348 TTTATTTT-TGTA
1 TTTATTTTATTTA
16250360 TTTATTTTATTTA
1 TTTATTTTATTTA
*
16250373 TTTATTTTTGTTTA
1 TTTA-TTTTATTTA
16250387 TTTATCTTTA
1 TTTAT-TTTA
16250397 AAGTATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
12 8 0.26
13 8 0.26
14 15 0.48
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:16250386 original size:18 final size:18
Alignment explanation
Indices: 16250347--16250391 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
16250337 CTGAGCTGAT
16250347 TTTTATTT-TTGTATTTA
1 TTTTATTTATTGTATTTA
*
16250364 TTTTATTTATT-TATTTT
1 TTTTATTTATTGTATTTA
16250381 TGTTTATTTAT
1 T-TTTATTTAT
16250392 CTTTAAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (18 bp):
TTTTATTTATTGTATTTA
Found at i:16250452 original size:17 final size:17
Alignment explanation
Indices: 16250432--16250465 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
16250422 ATGAAAAATT
16250432 AAAGAA-AAAAATTAAAA
1 AAAGAACAAAAA-TAAAA
16250449 AAAGAACAAAAATAAAA
1 AAAGAACAAAAATAAAA
16250466 CATTAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.82, C:0.03, G:0.06, T:0.09
Consensus pattern (17 bp):
AAAGAACAAAAATAAAA
Found at i:16260796 original size:44 final size:43
Alignment explanation
Indices: 16260717--16261214 Score: 312
Period size: 43 Copynumber: 11.3 Consensus size: 43
16260707 AAAAAAAGCC
* * *
16260717 TTATTTATTTTTCAAAAGTTTTGAGCCTTTGTTTAGAAGAGCT
1 TTATTTATTTTTTAAAAGTATTGAGCCTCTGTTTAGAAGAGCT
* * * *
16260760 TTATTTATTTTTTAAAACTCATTAAGCCTCTATTTAGAGGAGCT
1 TTATTTATTTTTTAAAAGT-ATTGAGCCTCTGTTTAGAAGAGCT
* * ** *
16260804 TTATTTATTTATTTTTCAAAAGTCGTTAAGCCTCTGTTTAGGGGTGCT
1 TTATTTA--T-TTTTT-AAAAGT-ATTGAGCCTCTGTTTAGAAGAGCT
* *
16260852 TTATTTATATATTTTTTCAAAAGTCATTGAGCCTTTGTTTAG-AGAAGCC
1 TTA--T-T-TATTTTTT-AAAAGT-ATTGAGCCTCTGTTTAGAAG-AGCT
* * * ** * *
16260901 TTCTATATTTTTCAAAAGTTATTGAGTTTCTATTTAGATGAGCCT
1 TTATTTATTTTTTAAAAG-TATTGAGCCTCTGTTTAGAAGAG-CT
* * * * * *
16260946 TT-TATATTTTTTAGAA-TTTGTGAGACTCTGTTTAGAAAAGCC
1 TTATTTATTTTTTAAAAGTAT-TGAGCCTCTGTTTAGAAGAGCT
* * *
16260988 TTATTTATTTTTCAAAAGT-TGTGAGCCTCTATTTAGAGGAGCT
1 TTATTTATTTTTTAAAAGTAT-TGAGCCTCTGTTTAGAAGAGCT
* * * *
16261031 TTATTTATTTGTCAAAAGT-TGTGAGCCTCTGTTTAGAAAAACT
1 TTATTTATTTTTTAAAAGTAT-TGAGCCTCTGTTTAGAAGAGCT
* * * *
16261074 TTATTTATTTTTTAGAAGT-TGTAAAGCCTTTGTTTAGAGGAGCT
1 TTATTTATTTTTTAAAAGTAT-T-GAGCCTCTGTTTAGAAGAGCT
* *
16261118 TTATTTA-TTTTTAAAAGTAGTGAGCCTCTGTTTAG-GGAAGCT
1 TTATTTATTTTTTAAAAGTATTGAGCCTCTGTTTAGAAG-AGCT
* * * * *
16261160 TTATTTATTTTTCAAAAAT-TGTAGAGCCTCTATTTAAAAGAGCC
1 TTATTTATTTTTTAAAAGTAT-T-GAGCCTCTGTTTAGAAGAGCT
*
16261204 TTATATATTTT
1 TTATTTATTTT
16261215 CAAAAAATTG
Statistics
Matches: 363, Mismatches: 69, Indels: 45
0.76 0.14 0.09
Matches are distributed among these distances:
41 2 0.01
42 28 0.08
43 140 0.39
44 107 0.29
45 13 0.04
46 1 0.00
47 6 0.02
48 30 0.08
49 31 0.09
50 2 0.01
51 1 0.00
52 2 0.01
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (43 bp):
TTATTTATTTTTTAAAAGTATTGAGCCTCTGTTTAGAAGAGCT
Found at i:16260833 original size:48 final size:48
Alignment explanation
Indices: 16260717--16260895 Score: 206
Period size: 48 Copynumber: 3.8 Consensus size: 48
16260707 AAAAAAAGCC
* * * *
16260717 TTATTTATTTTTCAAAAGT-TTTGAGCCTTTGTTTAGAAGAGCTTTAT
1 TTATTTATTTTTCAAAAGTCATTAAGCCTCTGTTTAGAGGAGCTTTAT
* *
16260764 TTA--T-TTTTT-AAAACTCATTAAGCCTCTATTTAGAGGAGCTTTAT
1 TTATTTATTTTTCAAAAGTCATTAAGCCTCTGTTTAGAGGAGCTTTAT
* * *
16260808 TTATTTATTTTTCAAAAGTCGTTAAGCCTCTGTTTAGGGGTGCTTTAT
1 TTATTTATTTTTCAAAAGTCATTAAGCCTCTGTTTAGAGGAGCTTTAT
* * *
16260856 TTATATATTTTTTCAAAAGTCATTGAGCCTTTGTTTAGAG
1 TTATTTA-TTTTTCAAAAGTCATTAAGCCTCTGTTTAGAG
16260896 AAGCCTTCTA
Statistics
Matches: 110, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
43 5 0.05
44 31 0.28
45 1 0.01
46 1 0.01
47 8 0.07
48 36 0.33
49 28 0.25
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (48 bp):
TTATTTATTTTTCAAAAGTCATTAAGCCTCTGTTTAGAGGAGCTTTAT
Found at i:16261064 original size:86 final size:86
Alignment explanation
Indices: 16260710--16261233 Score: 419
Period size: 86 Copynumber: 5.9 Consensus size: 86
16260700 TTGTAAAAAA
* * * * *
16260710 AAAAGCCTTATTTATTTTTCAAAAGTTTTGAGCCTTTGTTTAGAAGAGCTTTATTTATTTTTTAA
1 AAAAGCCTTATTTATTTTTCAAAAGTTGTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTTCAA
* * *
16260775 AACTCAT-TAAGCCTCTATTTAG
66 AAGT--TGTGAGCCTCTGTTTAG
** * * * * * *
16260797 AGGAGCTTTATTTATTTATTTTTCAAAAGTCGTTAAGCCTCTGTTTAGGGGTGCTTTATTTATAT
1 AAAAGC----CTTATTTATTTTTCAAAAGTTG-TGAGCCTCTATTTAGAGGAGCTTTA--T-T-T
*
16260862 ATTTTTTCAAAAGTCAT-TGAGCCTTTGTTTAG
57 A-TTTTTCAAAAGT--TGTGAGCCTCTGTTTAG
* * * * ** * * *
16260894 AGAAGCCTTCTATATTTTTCAAAAGTTATTGAGTTTCTATTTAGATGAGCCTTT-TATATTTTTT
1 AAAAGCCTTATTTATTTTTCAAAAGTT-GTGAGCCTCTATTTAGAGGAG-CTTTATTTATTTTTC
* * *
16260958 AGAATTTGTGAGACTCTGTTTAG
64 AAAAGTTGTGAGCCTCTGTTTAG
*
16260981 AAAAGCCTTATTTATTTTTCAAAAGTTGTGAGCCTCTATTTAGAGGAGCTTTATTTATTTGTCAA
1 AAAAGCCTTATTTATTTTTCAAAAGTTGTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTTCAA
16261046 AAGTTGTGAGCCTCTGTTTAG
66 AAGTTGTGAGCCTCTGTTTAG
* * * * * * *
16261067 AAAAACTTTATTTATTTTTTAGAAGTTGTAAAGCCTTTGTTTAGAGGAGCTTTATTTATTTTT-A
1 AAAAGCCTTATTTATTTTTCAAAAGTTGT-GAGCCTCTATTTAGAGGAGCTTTATTTATTTTTCA
*
16261131 AAAGTAGTGAGCCTCTGTTTAG
65 AAAGTTGTGAGCCTCTGTTTAG
** * * * * * *
16261153 GGAAGCTTTATTTATTTTTCAAAAATTGTAGAGCCTCTATTTAAAAGAGCCTTATATA-TTTTCA
1 AAAAGCCTTATTTATTTTTCAAAAGTTGT-GAGCCTCTATTTAGAGGAGCTTTATTTATTTTTC-
*
16261217 AAAAATTGTGAGCCTCT
64 AAAAGTTGTGAGCCTCT
16261234 ACTTAGAGGA
Statistics
Matches: 349, Mismatches: 71, Indels: 34
0.77 0.16 0.07
Matches are distributed among these distances:
85 8 0.02
86 137 0.39
87 85 0.24
88 9 0.03
89 2 0.01
91 20 0.06
92 20 0.06
93 30 0.09
94 5 0.01
95 1 0.00
96 2 0.01
97 30 0.09
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (86 bp):
AAAAGCCTTATTTATTTTTCAAAAGTTGTGAGCCTCTATTTAGAGGAGCTTTATTTATTTTTCAA
AAGTTGTGAGCCTCTGTTTAG
Found at i:16261260 original size:129 final size:128
Alignment explanation
Indices: 16260988--16261265 Score: 301
Period size: 129 Copynumber: 2.1 Consensus size: 128
16260978 TAGAAAAGCC
* *
16260988 TTATTTATTTTTCAAAAGTTGTGAGCCTCTATTTAGAGGAGCTTTATTTATTTGTCAAAAGTTGT
1 TTATTTA-TTTT-AAAAGTAGTGAGCCTCTATTTAGAGGAGCTTTATTTATTTGTCAAAAATTGT
* * * ** * * * **
16261053 GAGCCTCTGTTTAGAAAAACTTTATTTATTTTTTAGAAGTTGTAAAGCCTTTGTTTAGAGGAGCT
64 GAGCCTCTATTTAGAAAAACCTTATATATTTTCAAAAAATTGTAAAGCCTCTACTTAGAGGAGCT
* *
16261118 TTATTTATTTTTAAAAGTAGTGAGCCTCTGTTTAG-GGAAGCTTTATTTATTTTTCAAAAATTGT
1 TTATTTA-TTTTAAAAGTAGTGAGCCTCTATTTAGAGG-AGCTTTATTTATTTGTCAAAAATTGT
* *
16261182 AGAGCCTCTATTTA-AAAGAGCCTTATATATTTTCAAAAAATTGT-GAGCCTCTACTTAGAGGAG
64 -GAGCCTCTATTTAGAAA-AACCTTATATATTTTCAAAAAATTGTAAAGCCTCTACTTAGAGGAG
*
16261245 TTT
127 -CT
*
16261248 TTATGTTATTTAAAAAGT
1 TTAT-TTATTTTAAAAGT
16261266 TTGATTATCT
Statistics
Matches: 125, Mismatches: 18, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
128 2 0.02
129 63 0.50
130 57 0.46
131 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (128 bp):
TTATTTATTTTAAAAGTAGTGAGCCTCTATTTAGAGGAGCTTTATTTATTTGTCAAAAATTGTGA
GCCTCTATTTAGAAAAACCTTATATATTTTCAAAAAATTGTAAAGCCTCTACTTAGAGGAGCT
Done.