Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167955.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_215, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50203
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.27
Warning! 1000 characters in sequence are not A, C, G, or T
Found at i:1930 original size:26 final size:26
Alignment explanation
Indices: 1894--1945 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1884 TTGACTTAGC
*
1894 CATACGGAGTTCATTTCC-AGTCTAAG
1 CATACAGAGTTCA-TTCCTAGTCTAAG
1920 CATACAGAGTTCATTCCTAGTCTAAG
1 CATACAGAGTTCATTCCTAGTCTAAG
1946 ATCGGACAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCTAGTCTAAG
Found at i:2795 original size:26 final size:26
Alignment explanation
Indices: 2766--2818 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2756 GTTGACTTAG
2766 GCATACGGAGTTCATTCCCTA-TCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
2792 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2818 G
1 G
2819 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:4416 original size:717 final size:717
Alignment explanation
Indices: 3043--5139 Score: 3440
Period size: 717 Copynumber: 2.9 Consensus size: 717
3033 GAACGCACAC
*
3043 CCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
**
3108 GGACACATTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTG
66 GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
3172 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTACTTCTGAAAAAAT
131 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTACTTCTGAAAAAAT
*
3237 TTTAAAAAAATCTCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
196 TTTTAAAAAATCTCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
3302 CCTTGAAACTTCAGATGAACGCTTAAGAGACCATTGTTGAATTTACAAGCCATAAAAATGGCATT
261 CCTTGAAACTTCACATGAACGCTTAAGAGACCATTGTTGAATTTACAAGCCATAAAAATGGCATT
3367 GGCACGGCAAAAATATGAAGCTGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
326 GGCACGGCAAAAATATGAAGCTGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
3432 ATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGATTGGCTTAGG
391 ATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGATTGGCTTAGG
* *
3497 TATCGGAGTTCATTCCCAGTTTAAGATCAGACCAGACCGATGGTTGTGGCAGCAGGATCGATAGC
456 CATCGGAGTTCATTCCCAGTTTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATCGATAGC
3562 ACGCTGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGACGGCTGAGCGCCT
521 ACGCTGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGACGGCTGAGCGCCT
3627 GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAATTCATTCCCAGTCTAAGCATATGGAGTT
586 GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAATTCATTCCCAGTCTAAGCATATGGAGTT
3692 CATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGTGAACTCA
651 CATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGTGAACTCA
3757 TA
716 TA
3759 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
3824 GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
66 GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
3889 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTACTTCTGAAAAAAT
131 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTACTTCTGAAAAAAT
*
3954 TTTTAAAAAATCTCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
196 TTTTAAAAAATCTCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
4019 CCTTGAAACTTCACATGAACGCTTAAGAGACCATTGTTGAATTTACAAGCCATAAAAATGGCATT
261 CCTTGAAACTTCACATGAACGCTTAAGAGACCATTGTTGAATTTACAAGCCATAAAAATGGCATT
*
4084 GGCACGGCAAAAATATGAAGCTGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGG
326 GGCACGGCAAAAATATGAAGCTGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
4149 ATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGATTGGCTTAGG
391 ATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGATTGGCTTAGG
4214 CATCGGAGTTCATTCCCAGTTTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATCGATAGC
456 CATCGGAGTTCATTCCCAGTTTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATCGATAGC
4279 ACGCTGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGACGGCTGAGCGCCT
521 ACGCTGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGACGGCTGAGCGCCT
4344 GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAATTCATTCCCAGTCTAAGCATATGGAGTT
586 GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAATTCATTCCCAGTCTAAGCATATGGAGTT
4409 CATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGTGAACTCA
651 CATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGTGAACTCA
4474 TA
716 TA
4476 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
1 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
4541 GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
66 GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * * *
4606 GATGCCAACCAAAATACAAGGATCACGTCTACCAAACTTTGGGGCAAAAACTCCTTC-GAAAAAA
131 CATGCCAACAAAAATACAAGGATCATGTCTACC-AAGTTTGGAGCCAAAACTACTTCTGAAAAAA
* * *
4670 GTTTTTAAAAAATCAT-G-AACCTGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
195 -TTTTTAAAAAATC-TCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
4733 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
258 TTGCCTTGAAACTTCACATGAACGCTTAAGAGACCATTGT-TGAATTTACAAGCCATAAAAATGG
* * *
4798 CATTGGCATGGCAGAAAA-ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
322 CATTGGCACGGCA-AAAATATGAAGCTGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
4862 TGCGCATCCCGCCTCTCTGGCCAGCATAGTGCCCG--C-CT-GCCTGCTCGTTTTGTCGGTTGGC
386 TGCGCATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGATTGGC
* ** ** ** * * *** * *
4923 TTAGGCATACGGAGTTCATTCCCAGTCTACCATTGGACTGGATTGAGGGTTGCATCAGTAGGATT
451 TTAGGCAT-CGGAGTTCATTCCCAGTTTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATC
** * * * * * **
4988 GGCAGCACGCAGAGAGGGACCCGATCGATCCCAGGCTT-TCGCATCCTGCCCCTCTGGCCGATTG
515 GATAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGT-GCATCCTGCCCCTCTGGACGGCTG
** * * * * * * *
5052 AGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTTCCAATCTAAGCATA
579 AGCGCCTGCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAATTCATTCCCAGTCTAAGCATA
*** * *
5117 CAAAGTTCATTTCTAGTCTAAGA
644 TGGAGTTCATTCCCAGTCTAAGA
5140 GCAGACAGGA
Statistics
Matches: 1302, Mismatches: 71, Indels: 17
0.94 0.05 0.01
Matches are distributed among these distances:
714 29 0.02
715 171 0.13
716 118 0.09
717 836 0.64
718 143 0.11
719 5 0.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (717 bp):
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTACTTCTGAAAAAAT
TTTTAAAAAATCTCGAAACGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCTTGAAACTTCACATGAACGCTTAAGAGACCATTGTTGAATTTACAAGCCATAAAAATGGCATT
GGCACGGCAAAAATATGAAGCTGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGACCGGCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGATTGGCTTAGG
CATCGGAGTTCATTCCCAGTTTAAGATCAGACCAGACTGATGGTTGTGGCAGCAGGATCGATAGC
ACGCTGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGACGGCTGAGCGCCT
GCACGCTCATTTCGTGGGTTAACTTAGGCATACAGAATTCATTCCCAGTCTAAGCATATGGAGTT
CATTCCCAGTCTAAGATTGAATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGTGAACTCA
TA
Found at i:7889 original size:877 final size:877
Alignment explanation
Indices: 4462--11561 Score: 7879
Period size: 876 Copynumber: 8.0 Consensus size: 877
4452 ACATGCTGGG
* *
4462 CTCGTGAACTCATA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
4526 AAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* * * * *
4591 CTGAATTTTTTTGTGGATGCCAACCAAAATACAAGGATCACGTCTACCAAACTTTGGGGCAAAAA
131 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC-AAGTTTGGGGCCAAAA
* *
4656 CTCCTTC-GAAAAAAGTTTTTAAAAAATCAT-GAACC-TGAAAAGTTTCAAAAATCGTGAAAAAT
195 CTCCTTCTGAAAAAA-TTTTAAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT
4718 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
258 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
*
4783 AAGCCATAAAAATGGCATTGGCATGGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCT
323 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
4848 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-AGCATAGT----GCCCGCCTGCCTGCTC
388 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTC
* ** ** ** ***
4908 GTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTACCATTGGACTGGATTGAGGGT
452 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGT
*** * * * * * * *
4973 TGCATCAGTAGGATTGGCAGCACGCAGAGAGGGACCCGATCGATCCCAGGCTTTCGCATCCTGCC
517 TGTGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * * *
5038 CCTCTGGCCGATTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTT
582 CCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
* *
5103 CCAATCTAAGCATACAAAGTTCATTTCTAGTCTAAGAGCAGACAGGATCGAGGGTTA-TGGGTGC
647 CCAGTCTAAG-AT-C--AG-T-A---C----C--AGA-C---C---A---AGGGTTACAGGGTGC
* * * * * *** * *
5167 ATATGCTGGGCTTGAGCATGTACTGGTGCCGTATTTTTTTTTATCCGGGCCACAATCG-CAGGAG
687 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTC-GGAG
* ** * *
5231 CATCATCGGAGAACCTGACCGACGGTATTTTGGTTCTGACGATTGGGGGGGCAGGGGGTGTGGTG
751 CAT-ATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGGT-GTG
* *
5296 TGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
813 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
5361 CTCGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * *
5426 AAGTGTCTGAAATGGGAAAACTTTTCTCAAATGGTCACAAATTCCTGTACACTTCGAGTATTTAG
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* * * *
5491 CTGAATTTTTTTTTGCATGCCAATAAAAATACGAGGATCATGTCTACCAAGTTTGGGGCCAAAAT
131 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
5556 TCTTTCT-AAAAAAATTTAAAAAAATCTCAAATCGTAAAAAGTTTCAAAAATCGTAAAAAATAGA
196 TCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
5620 AAACGAGTCATCTTGCCATGAAAC-T----T-----C-------A-C-----ATGAATTTACAAA
261 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
5662 CCATAAAAATGGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
326 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
5727 AATCCACGGCTTGTGCATCCCGCCTTTCTGGCCGACGTAGTGCCCGTCCGCCCGTCTGCTCGTTT
391 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * ** * * * *
5792 CGTCGATCGGATTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCGAGGGCTATG
456 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTG
* * * * * * * *
5857 GTAGCAGCATCAGCAGCA-TCTAAGGGGAACCCGGCC-ATTCCCCTGCTTGCGCATCCTGCCCCT
521 GCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGA-TCCCCGGCTTGCGCATCCTGCCCCT
** * *
5920 C-GGCCGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
585 CTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
*
5984 GTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCGGTTTGGACCAAGGGTTACAGGTGCACAT
650 GTCTAAG-AT-C--AG-T-A---CCAGACCAAG---GG-TT--A-C-A--G-----GGTGCACAT
* * ** *
6049 GCTTGGG-TCGGGCATGTGCTGGTGCCGTA-TTTTTTTCGCCCGAGGCACCATCACCGAAGCATC
691 GC-TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCAT-
* * * * * **
6112 ACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGGTTGGGGGGATGGTGGGGGTGTGCGCAC
754 ATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGG-GGGGGTGTGCGCAC
* * *
6177 ATGATGTCCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAAC
818 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
6237 CTTGAGAACTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
**
6302 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTTC
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
*
6367 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAAC
131 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
** * * **
6432 TAATTCTGAAAATATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
196 TCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
6497 AAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-TGAATTTACAAA
261 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
6561 CCATAAAAATGGCATTGGCATGGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATC
326 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
6626 GATCCACGACTTGCGCATCCCGCCTCTCTGGTCGATGTAGTGCCCGCCCGCCTGCCCGCTCGTTT
391 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * * * *
6691 CATCGGTTGGCTTAGGCATGCAGAGTTCATTCCTAGTCTAAGATC-GAACCAGACCAAGGTTTGA
456 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTTGT
* * * * *
6755 GGCAGCAGGATCGGCAGGACGCTGAGGGGCACCCGACCGATCCCCAGCTTACGCATCCT-ACCCT
520 GGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCT
* * * ** * * *
6819 CTGGCAGGCTAAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCA
585 CTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
* * * *
6884 GTCTAAGATC-GGACCAGACCGATGGTTGC-GGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
650 GTCTAAGATCAGTACCAGACCAAGGGTTACAGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * * * *
6947 CCACTTTTTTTTTTTGTCCGGGGCACCATCGTCGAAGCATCGTCAGAGAACCTAATCGACGGCAT
715 CCGC-ATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCAT-ATCGGAGAACCTGACCGACGGCAT
* * * * * *
7012 TGGTGTTCCGACGATTGGGGGTGCCGGGGGGTTTGCGCACATGATGTACGATGGGTGTTGGTACT
778 TGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
7077 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
843 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
7112 CTCAAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
7177 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAGACTTTGAGTTTTTAG
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* * *
7242 CTGAATATTTTTGTGCATGCCAAAAAAATATATAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
131 CTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
** * *
7307 CTCCTTCTGAAAAAATTTTAAAAAAATCTCGAATTGTAAAAAGTTTCTAAAATCGTGAAAAATAT
195 CTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
7372 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
260 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
7437 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTAT
325 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * ** * *
7502 CGATCTACGGCTTGCGCATCCCGCCTGTTTGGCCGACGTGGTGCCCGCCTACCCACCCGCTCATT
390 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * *
7567 TCGTCGATTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGT
455 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGT
* * * * * **
7632 GGCAGCAAGATCGACAGCACGCTGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCAGCCATT
520 GGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCT
* ** * *
7697 CTGGCCGACTGAGGGCCCACACAATCGTTTCGAGGGTTGACTTAGGGATACGAAGTTCATTCCCA
585 CTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
*
7762 GTCTAAGATCAG-ACCAGACCAAGGGTTACAGGG-GCACATGCTAGGCTCGGGCATGTGCTGGTG
650 GTCTAAGATCAGTACCAGACCAAGGGTTACAGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * ** *
7825 CCGTATTTTTTTTTGCTTGGGGCACCATCGTCGGAGCATATTCGGAGAACCTGACCGGCGGCATT
715 CCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATA-TCGGAGAACCTGACCGACGGCATT
* * * * * * *
7890 GGGGTTCCGGCGATTGAGGGCGTC-AGGTGGTGTGCACACATGATGTGCAATGGGTGCTGGTACT
779 GGGGTTCCGACGATTG-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
7954 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
843 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * * * *
7989 CTCAAGAACTCACCCCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGTTGCCAATAACAATTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
8054 AAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTT-G
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* * *
8118 CTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCATGTCAAGCCAAGTTTGGGGCAAAAA
131 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTA-CCAAGTTTGGGGCCAAAA
*
8183 CTCCTTCTGAAAAAATTTTAAAAAAATC-CAGAACCGTAATAAGTTTCAAAAATCGT-AACAAAT
195 CTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAA-AAAT
* * *
8246 AGAAAATGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAA
258 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
8311 AAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCT
323 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
8376 ATCTATCCACGGCTTGCACATCCCCCCACTCTGGCC-A-GT-GTAG--TGCCCGCCAGCCCGCTC
388 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT-GCCCGCCCGCCCGCCCGCTC
* * * * *
8436 GTTTCGTCGGTTGGCTTAAGCGTGCGGAGTTCATTCCTAGTCTAAGATCAAACC-GAACCAAGGG
452 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGG
* * * * *
8500 TTGTGGCAGCAGGATCAGAAGCACGTTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGC
516 TTGTGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* * ** *
8565 CCTTCTGGTCGGTTGAGCGCCCCCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATT
581 CCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTG-G--G---T-----T---GA---C--T
* * *
8630 CCTAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATC-GAACCAGACTAAGGGTTAC-GGGT
627 --TAG-----GCATACGAAGTTCATTCCCAGTCTAAGATCAGTACCAGACCAAGGGTTACAGGGT
* * * * *
8693 GCACATGCTGGGCTTGCGCATGTGCTGGTGCCACATTTTTTTTGGCCCGGGCCACCATCGT----
685 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGA
* * * * *
8754 -C--A---GAGAACCTAACCGACAGCATTGGGGTTCTGACGATTGGGGGGGCGGAGGGGGTCTAC
750 GCATATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGG-GGGGGTGTGC
*
8813 GCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
814 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * **
8877 CTCGAGAAGTCACACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGATATTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
8942 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* *
9007 CTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAA
131 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
9071 CTCATTCTAAAAAAATTTTAAAAAAATCTCAAACTGTAAAAACTTTCCAAAATCGTGAAAAATAG
195 CTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
9136 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-TCAATTTAGAA
260 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
9200 GCCATAAAAATGGCATTGCCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
325 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * * * *
9265 CGATGCACGGCTTGCGCATCCTGCCTCTCTGGCTGGCGTAGTGCTCGCCCACCTGGCCGCTCGTT
390 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * *
9330 TCATCGGTTGGCTTAGGCATACGAAATTCATTCCCAGTCTAGGATCAGACC-GAACCAAGAGTTG
455 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTG
* * * * * * *
9394 CGACAGTAGGATTGGTAGCACGCT-ATGGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCC
519 TGGCAGCAGGATCGGCAGCACGCTGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC
* * * * * * *
9458 CTCTGGCCGGCTGAGCACGCGCACGGTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCC
583 CTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T--
* * **
9523 CACTCTAAGCATACGGAATTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTT-GTGGGTGC
634 -A--C---G-A-A--G--TTCATTCCCAGTCTAAGATCAGTACCAGACCAAGGGTTACAGGGTGC
** * * * * *
9586 ACATGCTGGG-TGCCAGCATGTGCTGGTGCCGCATTTTTTTTCACCTGGGGCACCATCATCGAAA
687 ACATGCTGGGCT-CGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAG
* * * *
9650 CATCGA-CGGAGAACCTTACCGGCGACGTTGGGGTTCCGACGATT-GGGGGGCTGGGGGGGTGTG
751 CAT--ATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGGTGTG
* *
9713 CGCACATGATGTGCGATGGGTGCTAGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAAC
813 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
9778 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTACCAGTAGCAATTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
9843 AAGTGTCTGAAATGGGG-CACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCAATTTTTTAG
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* *
9907 CTGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
131 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
* *
9972 TCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
196 TCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
10037 AAACGAGTCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGGGATCATTGTATGAATTTACAAG
261 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * * * *
10102 CCATAAAAATTTCATTGGCAAGGCATAAATATAAAGATGTACCTAAACCCACCTACCACCCTATC
326 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
10167 GATCCATGGCTTACGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCCGCTCGTTT
391 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* * * ** **
10232 CATCAGTTGGCTTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTATG
456 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG-T-T-
* * * * * * ***
10297 GTAGCAGGATCGATAGTAGGATCGGCAGCATGCAGATGGGGTCCCGATCGATCCTTTGCTTGCGC
518 GT----GG--C---AGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * * *
10362 ATCTTGCCCTTCTGGCCGACTGAGCGCCCACGCACTCGTTTCGTGGGTTGACTTAGGTATACGGA
574 ATCCTGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAA
* * * * * *
10427 GTTCATTCCCTGTCTAAGATC-GGATCGGACGGAA-GGTTGCA-GGTGCACATGCTGGGCTCGGG
639 GTTCATTCCCAGTCTAAGATCAGTACCAGAC-CAAGGGTTACAGGGTGCACATGCTGGGCTCGGG
* * * * *
10489 CATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGAAAAACCTG
703 CATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCAT-ATCGGAGAACCTG
* * *
10554 ACCGACGGCACT-GGGTTTCGACGATT-GGGGGGCGGGGGGGTGTGCACACATGATGTGC-AGTG
767 ACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA-TG
*
10616 GGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAAC
831 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
10663 CTTGAGAACTGACACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
1 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
10728 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTGTTTAG
66 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
* *
10793 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAAA
131 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
*
10858 TCCTTCTGAAAAAA-TTTAAAAAAAGTCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAG
196 TCCTTCTGAAAAAATTTTAAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
10922 AGAACGAGTCGTCTTGCCATGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
260 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
10987 GCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTAT
325 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
** * * * * * *
11052 CGATCCACAACTTGCACATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCAGCTCATT
390 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * *
11117 TTGAT-GGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGAT-TGAACCAGACCAAGGGTT
455 TCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTT
*** * ** * * *
11180 GCAACAGCAGGATCGGCAGCAC-ATAGAGGAAGACCCGATCGATCTCCGGCTTACGCATCCTGCC
518 GTGGCAGCAGGATCGGCAGCACGCT-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * * *
11244 CCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA-TAGAGTTCATT
582 CCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATT
11308 CCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACA-GGTG
646 CCCAGTCTAAG-AT-C--AG-T-A----C---C--AGA-C----C--A---AGGGTTACAGGGTG
* * ** * *
11372 CACATGCTAGGCTCAGGCATGTGCTGGTATCGCATTTTTTTTCACCCGGGGCACCATCGCCGGAG
686 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAG
* * * * **
11437 CATCACCGGTGAACCTGACCAACGGCATTAGGGTTCCGGTGATTGGGGGGGCGGGGGGGTCTGTG
751 CAT-ATCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGG--TGTG
11502 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT-ATCA
813 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
11562 TAACATCTAG
Statistics
Matches: 5273, Mismatches: 719, Indels: 415
0.82 0.11 0.06
Matches are distributed among these distances:
862 2 0.00
865 3 0.00
866 2 0.00
868 2 0.00
871 2 0.00
872 151 0.03
873 10 0.00
874 145 0.03
875 240 0.05
876 821 0.16
877 623 0.12
878 227 0.04
879 44 0.01
880 79 0.01
881 2 0.00
882 3 0.00
883 3 0.00
884 2 0.00
885 161 0.03
886 401 0.08
887 241 0.05
888 308 0.06
889 50 0.01
890 15 0.00
891 238 0.05
892 1 0.00
893 6 0.00
894 2 0.00
895 2 0.00
896 3 0.00
897 5 0.00
898 114 0.02
899 289 0.05
900 543 0.10
901 335 0.06
902 53 0.01
903 11 0.00
904 48 0.01
905 2 0.00
907 2 0.00
908 1 0.00
910 1 0.00
912 1 0.00
913 78 0.01
914 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (877 bp):
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTG
GCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTC
TGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
TCTAAGATCAGTACCAGACCAAGGGTTACAGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CGCATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATATCGGAGAACCTGACCGACGGCATTGG
GGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAAC
Found at i:8653 original size:26 final size:24
Alignment explanation
Indices: 8624--8673 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
8614 GCATACAGAG
*
8624 TTCATTCCTAGTCTAAGCATACGAAC
1 TTCATTCCCAGTCTAAG-AT-CGAAC
8650 TTCATTCCCAGTCTAAGATCGAAC
1 TTCATTCCCAGTCTAAGATCGAAC
8674 CAGACTAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.22
25 2 0.09
26 16 0.70
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (24 bp):
TTCATTCCCAGTCTAAGATCGAAC
Found at i:9544 original size:26 final size:26
Alignment explanation
Indices: 9505--9557 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
9495 GTTGACTTAG
* *
9505 GCATATGGAGTTCATTCCCACTCTAA
1 GCATACGGAATTCATTCCCACTCTAA
*
9531 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCACTCTAA
9557 G
1 G
9558 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCACTCTAA
Found at i:10165 original size:901 final size:897
Alignment explanation
Indices: 7744--11561 Score: 4609
Period size: 886 Copynumber: 4.3 Consensus size: 897
7734 TGACTTAGGG
*
7744 ATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGGG-GCACATGCTAGG
1 ATACGGAA-TTCATTCCCAGTCTAAGATC-GACCGGACCAAGGGTTAC-GGGTGCACATGCT-GG
* ** * * *
7807 CT-CGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTTGGGGCACCATCGTCGGAGCAT-ATTCGG
62 GTGCCAGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCA--CGG
* * * * * *
7870 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATT-GAGGGCGTCAGGTGGTGTGCACACATGAT
125 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCG--GGGGGGTGTGCGCACATGAT
* *
7934 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
188 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
7999 CACCCCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGTTGCCAATAACAATTAAAGTGCCTGA
253 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGA
8064 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTT-GCTGAATTTTT
318 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTT
* * * *
8128 TTGGGCATGCCAACAAAAATACAAGGATCATGTCAAGCCAAGTTTGGGGCAAAAACTCCTTCTGA
383 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAACTCCTTCTGA
* *
8193 AAAAATTTTAAAAAAATC-CAGAACCGTAATAAGTTTCAAAAATCGT-AACAAATAGAAAATGAG
447 AAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAA-AAATAGAAAACGAG
* *
8256 TTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAA
510 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
8321 AATGGCATTGGCATGACAGAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCTATCCAC
575 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
8386 GGCTTGCACATCCCCCCACTCTGGCCAGTGTAGTGCCCG-CCA--GCCCGCTCGTTTCGTCGGTT
640 GGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCGCCCGCTCGTTTCATCGGTT
* * * * * * * * *
8448 GGCTTAAGCGTGCGGAGTTCATTCCTAGTCTAAGATCAAACCGAACCAAGGGTTGTGGCAGCAGG
705 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGAGTTGCGACAGCAGG
* * * * * * * **
8513 ATCAGAAGCACGTTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCTTCTGGTCGGT
770 ATCGGCAGCACGCT-AGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGAC
* *
8578 TGAGCGCCCCCACGCTCGTTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGC
834 TGAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* *
8642 ATAC-GAACTTCATTCCCAGTCTAAGATCGAACCAGACTAAGGGTTACGGGTGCACATGCTGGGC
1 ATACGGAA-TTCATTCCCAGTCTAAGATCG-ACCGGACCAAGGGTTACGGGTGCACATGCTGGG-
* * * *
8706 TTG-C-GCATGTGCTGGTGCCACATTTTTTTTGGCCCGGGCCACCA---TC---G--TCA--GAG
63 -TGCCAGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCACGGAG
* * * * *
8759 AACCTAACCGACAGCATTGGGGTTCTGACGATTGGGGGGGCGGAGGGGGTCTACGCACATGATGT
127 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGG-GGGGGTGTGCGCACATGATGT
* *
8824 GAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCA
190 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
8889 CACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-ATATTAAAGTGTCTAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCA-ATTAAAGTGTCTGAA
*
8953 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * * *
9018 TATGCATGCCAAAAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCATTCTAAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
9083 AAATTTTAAAAAAATCTCAAACTGTAAAAACTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGT
449 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
9148 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-TCAATTTAGAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
9212 GCATTGCCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCT
579 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
9277 TGCGCATCCTGCCTCTCTGGCTGGCGTAGTGCTCGCCCACCTGGCCGCTCGTTTCATCGGTTGGC
644 TGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACC-GCCCGCTCGTTTCATCGGTTGGC
* * * *
9342 TTAGGCATACGAAATTCATTCCCAGTCTAGGATCAGACCGAACCAAGAGTTGCGACAGTAGGATT
708 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGAGTTGCGACAGCAGGATC
* * * *
9407 GGTAGCACGCTATGGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGCTGA
773 GGCAGCACGCTA-GGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGA
* * * * * * ** *
9472 GCACGCGCACGGTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCACTCTAAGC
837 GCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* **
9533 ATACGGAATTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGTG
1 ATACGGAATTCATTCCCAGTCTAAGATC-GACCGGACCAAGGGTTACGGGTGCACATGCTGGGTG
* * * *
9598 CCAGCATGTGCTGGTGCCGCATTTTTTTTCACCTGGGGCACCATCATCGAAACATCGACGGAGAA
65 CCAGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATC-ACGGAGAA
* * * *
9663 CCTTACCGGCGACGTTGGGGTTCCGACGATTGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCG
129 CCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGC-GGGGGGGTGTGCGCACATGATGTGCG
* * *
9728 ATGGGTGCTAGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
9793 CCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTACCAGTAGCAATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
* *
9858 GG-CACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCAATTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
*
9922 CGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* *
9987 TTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * **
10052 GCATGAAACTTCACATGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATTTCAT
518 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * *
10117 TGGCAAGGCATAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTACG
583 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
* * * *
10182 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCCGCTCGTTTCATCAGTTGGCTTAG
648 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC-ACCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * * * *
10247 CCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTATGGTAGCAGGATCGATA
712 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAC-CA-AG--A--GTTGC--GA-C---A
* * * *** * * *
10312 GTAGGATCGGCAGCATGC-AGATGGGGTCCCGATCGATCCTTTGCTTGCGCATCTTGCCCTTCTG
765 GCAGGATCGGCAGCACGCTAG--GGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTG
* * * * * *
10376 GCCGACTGAGCGCCCACGCACTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCTGTC
828 GCCGACTGAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
10441 TAAG-
893 TAAGC
* *
10445 AT-CGG-----------A-TC---G---GA-CGG---AA-GGTTGCAGGTGCACATGCTGGGCT-
1 ATACGGAATTCATTCCCAGTCTAAGATCGACCGGACCAAGGGTTACGGGTGCACATGCTGGG-TG
** * * * *
10485 CGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCGTCGAAAAA
65 CCAGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATC-ACGGAGAA
* * *
10550 CCTGACCGACGGCACT-GGGTTTCGACGATTGGGGGGCGGGGGGGTGTGCACACATGATGTGC-A
129 CCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGA
* * *
10613 GTGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTGACAC
194 -TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
10678 CCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
** *
10743 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTGTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
* * *
10808 CATGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA-
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* *
10872 TTTAAAAAAAGTCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTT
453 TTTAAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
10937 GCCATGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
11002 TTGGCATGGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAACTTGC
582 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
11067 ACATCCCACCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-CACCAGCTCATTTTGAT-GGTTGGCT
647 ACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCGC-CC-GCTC-GTTTCATCGGTTGGCT
* * * *
11130 TAGGCATATGAAGTTCATTCCCAGTCTAAGAT-TGAACC-AGACCAAGGGTTGCAACAGCAGGAT
709 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCAAGAGTTGCGACAGCAGGAT
* * * *
11193 CGGCAGCAC-ATAGAGGAAGACCCGATCGATCTCCGGCTTACGCATCCTGCCCCTCTGGTCGACT
772 CGGCAGCACGCTAG-GG-GGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACT
* * *
11257 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGC
835 GAGCGCCCCCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
* * * * * *
11320 ATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACAGGTGCACATGCT-AG-G
1 ATACGGAATTCATTCCCAGTCTAAGATC-GACCGGACCAAGGGTTACGGGTGCACATGCTGGGTG
** * * * *
11383 CTCAGGCATGTGCTGGTATCGCATTTTTTTTCACCCGGGGCACCATCGCCGGAGCATCACCGGTG
65 C-CA-GCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCA-CGGAG
* * **
11448 AACCTGACCAACGGCATTAGGGTTCCGGTGATTGGGGGGGCGGGGGGGTCTGTGCGCACATGATG
127 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGG--TGTGCGCACATGATG
11513 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCT-ATCA
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
11562 TAACATCTAG
Statistics
Matches: 2502, Mismatches: 321, Indels: 190
0.83 0.11 0.06
Matches are distributed among these distances:
873 2 0.00
874 108 0.04
875 2 0.00
876 3 0.00
877 1 0.00
878 1 0.00
880 4 0.00
884 3 0.00
885 162 0.06
886 378 0.15
887 230 0.09
888 311 0.12
889 52 0.02
890 3 0.00
891 268 0.11
892 7 0.00
894 2 0.00
895 4 0.00
896 4 0.00
897 6 0.00
898 87 0.03
899 7 0.00
900 297 0.12
901 329 0.13
902 53 0.02
903 11 0.00
904 46 0.02
905 2 0.00
907 4 0.00
909 2 0.00
910 1 0.00
911 4 0.00
912 3 0.00
913 105 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
ATACGGAATTCATTCCCAGTCTAAGATCGACCGGACCAAGGGTTACGGGTGCACATGCTGGGTGC
CAGCATGTGCTGGTGCCGCATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCATCACGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
ACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGAGTTGCGACAGCAGGATCGGCAGCAC
GCTAGGGGGACCCGATCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCCCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
Found at i:11322 original size:26 final size:26
Alignment explanation
Indices: 11292--11344 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11282 GTTGACTTAG
* *
11292 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
11318 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
11344 G
1 G
11345 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:12108 original size:58 final size:58
Alignment explanation
Indices: 12036--12435 Score: 445
Period size: 59 Copynumber: 6.7 Consensus size: 58
12026 TGCGCAGCGA
* *
12036 AAAATTGATACTTTCAACTTTTCC-CTAAAAATATTCTTTTGAAACTTT-AATTTAGAGG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAACTTTGATTTTA-AGG
* *
12094 AAGATTGATACTTTCAACTTTTCCTCAAAAAT-TGATTTTTTGAAAATTT-ATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATAT--TTTTTTGAAACTTTGA-TTTTAAGG
* *
12153 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA---TATTTTTTT-GAAACTTTGATTTT-AAGG
* *
12216 AAAATTGATACTTTCAACTTTTCCTCAAAAATA-TATTTGGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTT-AAGG
*** *
12274 AAAATTGATACTTTCAACTTTTCCTCAAAACCCCTTTTTTTGAAA-TTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAA-ATATTTTTTTGAAACTTTGA-TTTTAAGG
**
12333 AAAATTGATACTTTCAACTTTTTCC-CAAAAATATATTTTTTTTTGGAAACTTTCTTTTTAAGG
1 AAAATTGATACTTTCAAC-TTTTCCTC-AAAA-ATA--TTTTTTT-GAAACTTTGATTTTAAGG
*
12396 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
12436 TATTTTTATT
Statistics
Matches: 299, Mismatches: 22, Indels: 41
0.83 0.06 0.11
Matches are distributed among these distances:
57 1 0.00
58 77 0.26
59 85 0.28
60 27 0.09
61 9 0.03
62 29 0.10
63 68 0.23
64 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTTAAGG
Found at i:12128 original size:27 final size:27
Alignment explanation
Indices: 12097--12185 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
12087 TTAGAGGAAG
12097 ATTGATACTTTCAACTTTTCCTCAAAA
1 ATTGATACTTTCAACTTTTCCTCAAAA
** * * ** *
12124 ATTGATTTTTTGAAAATTTATTTTTAAGGAAA
1 ATTGATACTTT--CAACTT-TTCCTCA--AAA
12156 ATTGATACTTTCAACTTTTCCTCAAAA
1 ATTGATACTTTCAACTTTTCCTCAAAA
12183 ATT
1 ATT
12186 TTTTTTTTTT
Statistics
Matches: 43, Mismatches: 14, Indels: 10
0.64 0.21 0.15
Matches are distributed among these distances:
27 15 0.35
29 8 0.19
30 8 0.19
32 12 0.28
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (27 bp):
ATTGATACTTTCAACTTTTCCTCAAAA
Found at i:12164 original size:59 final size:57
Alignment explanation
Indices: 12036--12434 Score: 455
Period size: 58 Copynumber: 6.7 Consensus size: 57
12026 TGCGCAGCGA
*
12036 AAAATTGATACTTTCAACTTTTCC-CTAAAAATATTCTTTTGAAACTTTA-ATTTAGAGG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATT-TTTTGAAACTTTATTTTTA-AGG
* *
12094 AAGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-T-ATTTTTTGAAACTTTATTTTTAAGG
* * *
12153 AAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTTTGGAAATTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA----TATTTTTT-GAAACTTT-ATTTTTAAGG
* * *
12216 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTGGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTT-ATTTTTAAGG
* *
12274 AAAATTGATACTTTCAACTTTTCCTCAAAACCCCT-TTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAA---ATATTTTTTGAAACTTTATTTTTAAGG
*
12333 AAAATTGATACTTTCAACTTTTTCC-CAAAAATATATTTTTTTTTGGAAACTTTCTTTTTAAGG
1 AAAATTGATACTTTCAAC-TTTTCCTC-AAAA-ATA---TTTTTT-GAAACTTTATTTTTAAGG
*
12396 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
12435 TTATTTTTAT
Statistics
Matches: 301, Mismatches: 20, Indels: 40
0.83 0.06 0.11
Matches are distributed among these distances:
58 83 0.28
59 80 0.27
60 28 0.09
61 10 0.03
62 25 0.08
63 75 0.25
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTATTTTTAAGG
Found at i:12338 original size:180 final size:178
Alignment explanation
Indices: 12036--12429 Score: 569
Period size: 180 Copynumber: 2.2 Consensus size: 178
12026 TGCGCAGCGA
* * *
12036 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAGATTG
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATA-TATTTGGAAACTTTAATTTAGAGGAAAATTG
***
12101 ATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTT
64 ATACTTTCAACTTTTCCTCAAAAACCCATTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTT
* *
12166 TCAAC-TTTTCCTCAAAAAT-TTTTTTTTTTTGGAAATTTTGATTTTCAAGG
129 TCAACTTTTTCC-CAAAAATATATTTTTTTTTGGAAACTTT-ATTTTCAAGG
*
12216 AAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTGGAAACTTTGATTTTCA-AGGAAAATT
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATATTTGGAAACTTT-AATTT-AGAGGAAAATT
* * *
12280 GATACTTTCAACTTTTCCTCAAAACCCCTTTTTTTGAAATTTTATTTTTAAGGAAAATTGATACT
63 GATACTTTCAACTTTTCCTCAAAAACCCATTTTTTGAAAATTTATTTTTAAGGAAAATTGATACT
* *
12345 TTCAACTTTTTCCCAAAAATATATTTTTTTTTGGAAACTTTCTTTTTAAGG
128 TTCAACTTTTTCCCAAAAATATATTTTTTTTTGGAAACTTTATTTTCAAGG
12396 AAAATTGATACTTTCAACTTTTCCCCAAAAATAT
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATAT
12430 TTTTTTTATT
Statistics
Matches: 194, Mismatches: 14, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
179 12 0.06
180 154 0.79
181 28 0.14
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (178 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATATTTGGAAACTTTAATTTAGAGGAAAATTGAT
ACTTTCAACTTTTCCTCAAAAACCCATTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
AACTTTTTCCCAAAAATATATTTTTTTTTGGAAACTTTATTTTCAAGG
Found at i:12459 original size:5 final size:5
Alignment explanation
Indices: 12451--12534 Score: 81
Period size: 5 Copynumber: 17.6 Consensus size: 5
12441 TTATTTAAAG
* *
12451 AAAAT AAAAT --AAT AAAAC AAAAT AAAAT AAAAT AAAAT AAAGA- AAAGT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT
*
12499 AAAA- AAAA- AATAAA AAAAT AAAA- AAAAT AAAAT AAA
1 AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAA
12535 GGTGAAAAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
3 3 0.04
4 10 0.15
5 51 0.76
6 3 0.04
ACGTcount: A:0.82, C:0.01, G:0.02, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:12476 original size:10 final size:9
Alignment explanation
Indices: 12446--12530 Score: 77
Period size: 9 Copynumber: 9.6 Consensus size: 9
12436 TATTTTTATT
*
12446 TAAAGAAAA
1 TAAAAAAAA
*
12455 T-AAAATAA
1 TAAAAAAAA
12463 TAAAACAAAA
1 TAAAA-AAAA
12473 TAAAATAAAA
1 TAAAA-AAAA
*
12483 TAAAATAAA
1 TAAAAAAAA
* **
12492 GAAAAGTAA
1 TAAAAAAAA
12501 -AAAAAAAA
1 TAAAAAAAA
12509 T-AAAAAAA
1 TAAAAAAAA
12517 TAAAAAAAA
1 TAAAAAAAA
12526 TAAAA
1 TAAAA
12531 TAAAGGTGAA
Statistics
Matches: 62, Mismatches: 10, Indels: 8
0.77 0.12 0.10
Matches are distributed among these distances:
8 20 0.32
9 25 0.40
10 17 0.27
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:12526 original size:43 final size:42
Alignment explanation
Indices: 12446--12535 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 42
12436 TATTTTTATT
* * *
12446 TAAAGAAAATAAAATAATAAAACAAAATAAAATAAAATAAAA
1 TAAAGAAAATAAAAAAAAAAAAAAAAATAAAATAAAATAAAA
12488 TAAAGAAAAGTAAAAAAAAAATAAAAAAATAAAA-AAAATAAAA
1 TAAAGAAAA-TAAAAAAAAAA-AAAAAAATAAAATAAAATAAAA
12531 TAAAG
1 TAAAG
12536 GTGAAAAGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
42 9 0.21
43 23 0.53
44 11 0.26
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (42 bp):
TAAAGAAAATAAAAAAAAAAAAAAAAATAAAATAAAATAAAA
Found at i:12570 original size:14 final size:11
Alignment explanation
Indices: 12549--12606 Score: 57
Period size: 12 Copynumber: 5.0 Consensus size: 11
12539 AAAAGGATAC
12549 TAAATAAACCTAA
1 TAAATAAA--TAA
12562 TATAATAAATAA
1 TA-AATAAATAA
12574 TAAATAAATAAA
1 TAAATAAAT-AA
12586 TAAATAACA-AA
1 TAAATAA-ATAA
12597 T-AATAAATAA
1 TAAATAAATAA
12607 AAAAAAGGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 11
0.79 0.00 0.21
Matches are distributed among these distances:
9 1 0.02
10 7 0.17
11 10 0.24
12 14 0.34
13 3 0.07
14 6 0.15
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (11 bp):
TAAATAAATAA
Found at i:12572 original size:4 final size:4
Alignment explanation
Indices: 12560--12607 Score: 57
Period size: 4 Copynumber: 12.5 Consensus size: 4
12550 AAATAAACCT
*
12560 AATA TAATA AAT- AATA AATA AATA AATA AAT- AACA AAT- AATA AATA
1 AATA -AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
12606 AA
1 AA
12608 AAAAAGGGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
3 8 0.21
4 26 0.68
5 4 0.11
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:12575 original size:7 final size:7
Alignment explanation
Indices: 12563--12606 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
12553 TAAACCTAAT
12563 ATAATAA
1 ATAATAA
12570 ATAATAA
1 ATAATAA
*
12577 ATAA-AT
1 ATAATAA
12583 A-AATAA
1 ATAATAA
*
12589 ATAACAA
1 ATAATAA
12596 ATAATAA
1 ATAATAA
12603 ATAA
1 ATAA
12607 AAAAAAGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
5 2 0.06
6 4 0.13
7 25 0.81
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (7 bp):
ATAATAA
Found at i:12597 original size:26 final size:28
Alignment explanation
Indices: 12549--12607 Score: 86
Period size: 26 Copynumber: 2.1 Consensus size: 28
12539 AAAAGGATAC
*
12549 TAAATAAACCTAATATAATAAATAATAAA
1 TAAATAAA-CTAATATAACAAATAATAAA
12578 TAAATAAA-TAA-ATAACAAATAATAAA
1 TAAATAAACTAATATAACAAATAATAAA
12604 TAAA
1 TAAA
12608 AAAAAGGGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 18 0.62
27 3 0.10
29 8 0.28
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.25
Consensus pattern (28 bp):
TAAATAAACTAATATAACAAATAATAAA
Found at i:13685 original size:26 final size:25
Alignment explanation
Indices: 13646--13697 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
13636 GTTGACTTAG
13646 GCATAGGACTTCATTCCCAGTCTAA
1 GCATAGGACTTCATTCCCAGTCTAA
*
13671 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATA-GGACTTCATTCCCAGTCTAA
13697 G
1 G
13698 ATCGGACCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATAGGACTTCATTCCCAGTCTAA
Found at i:15396 original size:875 final size:886
Alignment explanation
Indices: 12618--15685 Score: 3906
Period size: 875 Copynumber: 3.5 Consensus size: 886
12608 AAAAAGGGAA
* ** ** * *
12618 ACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACCGAGGGTTGCGATAGCAGGATCGACAACAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCAC
* ** * * *
12683 GCTGAAGGGGG-CCCGACCGATCCCCGGCTTATGCATCCTACCCCTCTGGCCGGCTGAGCACCCG
66 GCTG-AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
12747 CACGCTCATTTCGCGTGTTGACTTAGGCATACGAAGTTCATTCCCAG-T-C-TA-A--AAT-C--
130 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGCTACATAGAGTATTCCAG
* * * * *
12803 AGA-CTGGACCGAGGGTT-CTAGGTGCACATGCTAGGTTC-AGGCATGTGCTGGTG-CTGCATTT
195 AGATCAGGACCGAGGGTTGC-GGGTGCACATGTTAGGCTCGA-GCATGTGCTGGTGTC-ACATTT
* * ** * * * * * *
12864 TTTTTCACCCGGGGCACTATCGTCGGAGCATCGCCGGAGAACCTAATCAGTGGCATTGAGGTTCT
257 TTTTTCACCCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCTGCGGCATTGGGGTTCC
12929 GACGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC-CTTT
322 GACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTC-TT
*
12992 ATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
386 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
13057 TTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
451 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
13122 AAAATCCTGTACACTTCGAGTTCTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGAT
516 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGAT
* * * *
13187 CACGTCTACCAAGTTT-GGGCTAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCATAA
581 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCGAACCATAA
* *
13251 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGACT
646 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCT
* * *
13316 TAAGGGACCATTGTATGAATTTGCAAGACATAAAAATGGAATTGGCATGGAAGAAATATGAAGAT
711 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGAT
*
13381 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTTCTCTGGCCGGCGT
776 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
** ** *
13446 AGT-CCCGCCCGCCCGTCCGCTTATTTCGTCAGTTGGCTTAGGCAT
841 AGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** * **
13491 ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAAAATTGGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCAC
* * * ** * * *
13556 GCAGAGGAGGACCTGGTTGATCCCCGGCATGCGCATCTTGCCCCTCCGGCCGGCTGAGCGCCTGC
66 GCTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * * *
13621 ACACTCCTTTCTTGGGTTGACTTAGGCATA-GGACTTCATTCCCAGTCTAAGCATATGGAGTTCA
131 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG-CT-A-CATA--GAG-T-A
* *
13685 TTCCCAGTCTAAGATC-GGACCACATCGAGGGTTGTGGGTGCACATGTTAGGCTCGAGCAAGTGC
189 TT-CCAG----AGATCAGG---AC--CGAGGGTTGCGGGTGCACATGTTAGGCTCGAGCATGTGC
* * * * * *
13749 TGGTGTCACATTTTTTTTCGCCTGGGGCACCATCGCCAGAGCATCATTGGAGAACCTGACCTACA
244 TGGTGTCACATTTTTTTTCACCCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCTGCG
* ** * * * * *
13814 GCATTGGGGTTTCGGTGATTGGGAGGGCCAGGGGGTGCGCGCAGATGATGTGCGATGGGTGTTGG
309 GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
13879 TACTTGG-TCCTTATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAG
374 TACTTGGCT-CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
13943 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTT
438 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
14008 TTCAAATGGTCACAAAATCCAGTACACTTCGAGTTTTTAGCTG-ACTTTTTTCTGCATGCCAACA
503 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACA
* *
14072 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAATTTTTTAAAAAT
568 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAA
* * *
14137 TCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
633 TCTCGAACCATAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
*
14202 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATAGGGCATGGA
698 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT-TGGCATGGA
* *
14267 AGAAATATGAAGATGTGCCTGAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACC
762 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* ** ** * * * *
14332 TCTCTGGTCGGCGTAGTGCCCGCCAACCCACCAACTCGTTTCATTGGTCGACTTAGGCAT
827 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
14392 ATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAATAGGATCGACAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCAC
* * * *** *
14457 GCTGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATTTTGTCCC-CTGGCCAAATGAGTGCCCGC
66 GCTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGC
*
14521 ACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAG-T-C-TA-AG-A-T-C-G-
131 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGCTACATAGAGTATTCCAGA
* * **
14577 GATC-GGACCGAGGGTTGCGGGTGCATATGTTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTTT
196 GATCAGGACCGAGGGTTGCGGGTGCACATGTTAGGCTCGAGCATGTGCTGGTGTCACATTTTTTT
* * * * **
14641 TCGCCCGGGGCACCATCGTCAGAGCATCGTCGGAAAACCTGACCGGCGGCATTGGGGTTCCGGTG
261 TCACCCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCTGCGGCATTGGGGTTCCGACG
14706 ATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATT
326 ATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATT
* *
14771 GGCCCACTATCCCTCACCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
391 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
14836 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
456 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
14901 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGAATGCCAA-AAAAATACAAGGATCACGT
521 CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGT
* * * * *
14965 TTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTTAAAAAATCTCGAATCGTAAAAGGT
586 CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCGAACCATAAAAAGT
* *
15030 TTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTACCATGAAACTTAACATGAAGGCTTAAGG
651 TTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGG
*
15095 GACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGGCAA-AAATATGAAGATGTGC
716 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG-AAGAAATATGAAGATGTGC
* * * *
15159 ATAAACCCACCTACCACACTATTGATCCACGGCTTTCGCATCCCGCCTCTCTGGCCGGCGTAGTG
780 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG
*
15224 CCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGTAT
845 CCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
15266 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGCAACAGGATTGGCAGCAT
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCAC
* * * * * * *
15331 GCTGAGGGGGTCCCAGTCGATCCCAGGCTTGCGCATCTTGCCCCTCTGGCTGGTTAAGCGCCCGC
66 GCTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGC
*
15396 ACGCTCGTTTCGTGTGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
131 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAG-CT-A-CATA--GAG-T-
* *
15460 ATTCCCAGTCTAAGATCAGGCTAGACCGAGGGTTGCGGGTGCACATGTTGGGCTCGAGCATGTGT
188 ATT-CCAG----AGATCA-G---GACCGAGGGTTGCGGGTGCACATGTTAGGCTCGAGCATGTGC
* * ** * * *
15525 TGGCGCCACA-TTTTTTTCACCTAGGGCACCATCGTCGGAGCATCATCGGGGAACCTGACCTGTG
244 TGGTGTCACATTTTTTTTCACCCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCTGCG
* *
15589 GCATTGGGGTTCCGACGATTGGGGGGACCGGGGGGGTGTGCGCACATGATGTGCGATGGATGCTG
309 GCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
15654 GTACTTGGCCCTTATATTGGCCCCCTATCCCT
373 GTACTTGGCTCTTATATTGGCCCCCTATCCCT
15686 GTCATAACGT
Statistics
Matches: 1884, Mismatches: 241, Indels: 112
0.84 0.11 0.05
Matches are distributed among these distances:
872 18 0.01
873 124 0.07
874 210 0.11
875 543 0.29
876 17 0.01
877 4 0.00
878 2 0.00
880 7 0.00
881 3 0.00
884 2 0.00
885 3 0.00
886 1 0.00
887 2 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 2 0.00
893 5 0.00
894 1 0.00
895 2 0.00
896 7 0.00
898 143 0.08
899 343 0.18
900 199 0.11
901 241 0.13
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAACAGGATCGACAGCAC
GCTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGCTACATAGAGTATTCCAGA
GATCAGGACCGAGGGTTGCGGGTGCACATGTTAGGCTCGAGCATGTGCTGGTGTCACATTTTTTT
TCACCCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGACCTGCGGCATTGGGGTTCCGACG
ATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATCTCGAACCATAAAAAGT
TTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGAAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
Found at i:15457 original size:26 final size:26
Alignment explanation
Indices: 15421--15473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411 GTTGACTTAG
15421 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15473 G
1 G
15474 ATCAGGCTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:16292 original size:59 final size:58
Alignment explanation
Indices: 16162--16677 Score: 607
Period size: 59 Copynumber: 8.7 Consensus size: 58
16152 TCTTGCGTAG
*
16162 GGAAAATTGATACTTTCAACTTTTTCCT-AAAAA-TATTCTTTTGAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATTATT-TTTTGAAACTTTATTTTTA-A
* *
16220 GGAAGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATT-ATTTTTTGAAACTTTATTTTTAA
* * * *
16279 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ATTATTTTTT-GAAACTTT-ATTTTTAA
* * *
16341 GGAAAATTGATACTTTCAACTTGTCCTCAAAAA-TATTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTGAAACTTT-ATTTTTAA
* *
16399 AGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTT-TTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA--TTATTTTTTGAAACTTTATTTTTAA
* * *
16458 GGAAAATTGATACTTTCAACTTTTCCCCAAAAGTATT-TTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA--ATTATTTTTTGAAACTTT-ATTTTTAA
* ** *
16518 GGAAGATTGATACTTTCAACTTTTCCTCAGAAACCCT-TTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCA-AAA-ATTATTTTTTGAAACTTTATTTTTAA
* * *
16577 TGAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-TA-TTTTTTGAAACTTTATTTTTAA
*
16637 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTT
16678 TTATTTTTAT
Statistics
Matches: 402, Mismatches: 38, Indels: 37
0.84 0.08 0.08
Matches are distributed among these distances:
57 13 0.03
58 77 0.19
59 130 0.32
60 130 0.32
61 19 0.05
62 33 0.08
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTGAAACTTTATTTTTAA
Found at i:16462 original size:179 final size:175
Alignment explanation
Indices: 16162--16679 Score: 747
Period size: 179 Copynumber: 2.9 Consensus size: 175
16152 TCTTGCGTAG
* * *
16162 GGAAAATTGATACTTTCAACTTTTTCCT-AAAAATATTCTTTTGAAACTTTAATTTAGAGGAAGA
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATT-TTTTGAAACTTTATTTTA-AAGAAAA
16226 TTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAAGGAAAATTGATA
63 TTGATACTTTCAACTTTTCCTCAAAAATT--TTTTTTGAAAATTTATTTTTAAGGAAAATTGATA
*
16291 CTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTTGATTTTCAA
126 CTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTGATTTTCAA
* *
16341 GGAAAATTGATACTTTCAACTTGTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAAAGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTT-ATTTT-AAAGAAAAT
*
16406 TGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAATTGATAC
64 TGATACTTTCAACTTTTCCTCAAAAA--TTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATAC
*
16471 TTTCAACTTTTCCCCAAAAGTA--TTTTTTTGGAAACTTTGATTTTCAA
127 TTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTGATTTTCAA
* * * *
16518 GGAAGATTGATACTTTCAACTTTTCCTCAGAAACCCT-TTTTTTGAAATTTTATTTTTAATGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCA-AAA--ATATTTTTTGAAACTTTA-TTTTAAAGAAA
*
16582 ATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTGAAAATTTATTTTTAAGGAAAATTGA
62 ATTGATACTTTCAACTTTTCCTC-AAAA-AT-TTTTTTTGAAAATTTATTTTTAAGGAAAATTGA
16647 TACTTTCAACTTTTCCCCAAAAATATTTTTTTT
124 TACTTTCAACTTTTCCCCAAAAATATTTTTTTT
16680 ATTTTTATTT
Statistics
Matches: 308, Mismatches: 17, Indels: 26
0.88 0.05 0.07
Matches are distributed among these distances:
177 51 0.17
178 50 0.16
179 196 0.64
180 3 0.01
181 8 0.03
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (175 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAACTTTATTTTAAAGAAAATTG
ATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
AACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTGATTTTCAA
Found at i:16537 original size:119 final size:116
Alignment explanation
Indices: 16162--16679 Score: 639
Period size: 119 Copynumber: 4.4 Consensus size: 116
16152 TCTTGCGTAG
* * *
16162 GGAAAATTGATACTTTCAACTTTTTCCT-AAAAA--TATTCTTTTGAAACTTTA-ATTTAGAGGA
1 GGAAAATTGATACTTTCAAC-TTTTCCTCAAAAACCT-TTTTTTTGAAATTTTATTTTTA-AGGA
* * * *
16223 AGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAA
63 AAATTGATACTTTCAACTTTTCCCCAAAAATT--TTTTTGGAAAATTTATTTTCAA
* ** *
16279 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTTGATTTTCAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTT-GAAATTTT-ATTTTTAAGGA
* * * *
16344 AAATTGATACTTTCAACTTGTCCTCAAAAATATTTTTGGAAACTTTGATTTTCAA
63 AAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTGGAAAATTT-ATTTTCAA
*
16399 AGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
*
16464 TTGATACTTTCAACTTTTCCCCAAAAGTATTTTTTTGGAAACTTTGATTTTCAA
66 TTGATACTTTCAACTTTTCCCCAAAA--ATTTTTTTGGAAAATTT-ATTTTCAA
* * * *
16518 GGAAGATTGATACTTTCAACTTTTCCTCAGAAACCCTTTTTTTGAAATTTTATTTTTAATGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
* *
16583 TTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTGAAAATTTATTTTTAA
66 TTGATACTTTCAACTTTTCCCC-AAAA-AT-TTTTTTGGAAAATTTATTTTCAA
* **
16637 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTT
16680 ATTTTTATTT
Statistics
Matches: 356, Mismatches: 33, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
116 6 0.02
117 62 0.17
118 8 0.02
119 180 0.51
120 63 0.18
121 34 0.10
122 3 0.01
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAAATTTTTTTGGAAAATTTATTTTCAA
Found at i:16702 original size:5 final size:5
Alignment explanation
Indices: 16694--16786 Score: 56
Period size: 5 Copynumber: 18.8 Consensus size: 5
16684 TTATTTAAAG
*
16694 AAAAT AAAAT --AAT AAAAG AAAAT AAAAGT GAAAAT -AAA- AAAAT AAAGA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAA-AT
* *
16742 AAAGT AAAACA AAAAT AAAAT -AAAT AATAA- AATAAT AAAAT AAAA
1 AAAAT AAAA-T AAAAT AAAAT AAAAT AA-AAT AA-AAT AAAAT AAAA
16787 GGTAAAAAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 24
0.70 0.06 0.24
Matches are distributed among these distances:
3 3 0.04
4 10 0.14
5 42 0.60
6 11 0.16
7 4 0.06
ACGTcount: A:0.77, C:0.01, G:0.05, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:16728 original size:30 final size:29
Alignment explanation
Indices: 16693--16781 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 29
16683 TTTATTTAAA
*
16693 GAAAATAAAATAATAAAAGAAAATAAAAGT
1 GAAAATAAAATAATAAAAGAAAATAAAA-C
*
16723 GAAAATAAAAAAAT-AAAGAAAAGTAAAAC
1 GAAAATAAAATAATAAAAGAAAA-TAAAAC
*
16752 AAAAATAAAATAAATAATAA-AATAATAAAA
1 GAAAATAAAAT-AATAA-AAGAA-AATAAAA
16782 TAAAAGGTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
29 17 0.34
30 21 0.42
31 8 0.16
32 4 0.08
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (29 bp):
GAAAATAAAATAATAAAAGAAAATAAAAC
Found at i:16756 original size:29 final size:29
Alignment explanation
Indices: 16694--16776 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 29
16684 TTATTTAAAG
* **
16694 AAAATAAAATAATAAAAGAAAATAAAAGTG
1 AAAATAAAAAAAT-AAAGAAAATAAAAGCA
16724 AAAATAAAAAAATAAAGAAAAGTAAAA-CA
1 AAAATAAAAAAATAAAGAAAA-TAAAAGCA
*
16753 AAAATAAAATAAAT-AATAAAATAA
1 AAAATAAAA-AAATAAAGAAAATAA
16777 TAAAATAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
28 3 0.06
29 23 0.49
30 21 0.45
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.16
Consensus pattern (29 bp):
AAAATAAAAAAATAAAGAAAATAAAAGCA
Found at i:16762 original size:46 final size:47
Alignment explanation
Indices: 16689--16785 Score: 119
Period size: 46 Copynumber: 2.1 Consensus size: 47
16679 TATTTTTATT
*
16689 TAAAGAAAATAAAATAATAAAAGAAAATAAA-AGTGAAAATAAAAAAA
1 TAAAGAAAATAAAATAATAAAAGAAAATAAATAAT-AAAATAAAAAAA
* * *
16736 TAAAGAAAAGTAAAA-CA-AAAATAAAATAAATAATAAAATAATAAAA
1 TAAAGAAAA-TAAAATAATAAAAGAAAATAAATAATAAAATAAAAAAA
16782 TAAA
1 TAAA
16786 AGGTAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
46 27 0.61
47 12 0.27
48 5 0.11
ACGTcount: A:0.76, C:0.01, G:0.06, T:0.16
Consensus pattern (47 bp):
TAAAGAAAATAAAATAATAAAAGAAAATAAATAATAAAATAAAAAAA
Found at i:16793 original size:20 final size:20
Alignment explanation
Indices: 16696--16785 Score: 66
Period size: 20 Copynumber: 4.5 Consensus size: 20
16686 ATTTAAAGAA
16696 AATAAAAT-AATAA-AAGAA-
1 AATAAAATAAATAATAA-AAT
* *
16714 AATAAAAGTGAA-AATAAAAA
1 AATAAAA-TAAATAATAAAAT
*
16734 AATAAAGA-AAAGTAA-AACAAA
1 AATAAA-ATAAA-TAATAA-AAT
16755 AATAAAATAAATAATAAAAT
1 AATAAAATAAATAATAAAAT
16775 AATAAAATAAA
1 AATAAAATAAA
16786 AGGTAAAAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 18
0.75 0.03 0.22
Matches are distributed among these distances:
18 7 0.12
19 7 0.12
20 29 0.48
21 17 0.28
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.17
Consensus pattern (20 bp):
AATAAAATAAATAATAAAAT
Found at i:16824 original size:4 final size:4
Alignment explanation
Indices: 16817--16859 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
16807 AACCTAATCT
*
16817 AATA AAT- AATA AATA AATA AATA AA-A AACA AAT- AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
16860 AGAAAAAAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
3 9 0.26
4 26 0.74
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:16833 original size:11 final size:11
Alignment explanation
Indices: 16816--16859 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
16806 AAACCTAATC
16816 TAATAAAT-AA
1 TAATAAATAAA
16826 TAAATAAATAAA
1 T-AATAAATAAA
* *
16838 TAAAAAACAAA
1 TAATAAATAAA
16849 TAATAAATAAA
1 TAATAAATAAA
16860 AGAAAAAAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
10 1 0.04
11 24 0.86
12 3 0.11
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (11 bp):
TAATAAATAAA
Found at i:16835 original size:15 final size:15
Alignment explanation
Indices: 16817--16855 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
16807 AACCTAATCT
* *
16817 AATAAATAATAAATA
1 AATAAATAAAAAACA
16832 AATAAATAAAAAACA
1 AATAAATAAAAAACA
16847 AAT-AATAAA
1 AATAAATAAA
16856 TAAAAGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AATAAATAAAAAACA
Found at i:17688 original size:30 final size:30
Alignment explanation
Indices: 17645--17702 Score: 107
Period size: 31 Copynumber: 1.9 Consensus size: 30
17635 ACAGCCTCAA
17645 AAAAAGAAAAAAAATAATAATCAGATAAACG
1 AAAAAGAAAAAAAATAATAA-CAGATAAACG
17676 AAAAAGAAAAAAAATAATAACAGATAA
1 AAAAAGAAAAAAAATAATAACAGATAA
17703 TCAAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (30 bp):
AAAAAGAAAAAAAATAATAACAGATAAACG
Found at i:17731 original size:43 final size:42
Alignment explanation
Indices: 17684--17766 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
17674 CGAAAAAGAA
17684 AAAAAATAATAAC-AGATAATCAAAAA-TAA-AATAAGATAAATCC
1 AAAAAAT-ATAACAAGATAA--AAAAATTAATAATAA-ATAAATCC
*
17727 AAAAAATATTACAAGATAAAAAAATTAATAATAAATAAAT
1 AAAAAATATAACAAGATAAAAAAATTAATAATAAATAAAT
17767 AAATTATAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 5 0.14
42 13 0.36
43 18 0.50
ACGTcount: A:0.69, C:0.06, G:0.04, T:0.22
Consensus pattern (42 bp):
AAAAAATATAACAAGATAAAAAAATTAATAATAAATAAATCC
Found at i:17764 original size:19 final size:19
Alignment explanation
Indices: 17742--17783 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
17732 ATATTACAAG
17742 ATAAAAAAATTAATAATA-A
1 ATAAAAAAATT-ATAATATA
*
17761 ATAAATAAATTATAATATA
1 ATAAAAAAATTATAATATA
17780 ATAA
1 ATAA
17784 TAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAAAAAAATTATAATATA
Found at i:17917 original size:6 final size:6
Alignment explanation
Indices: 17906--17931 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
17896 TAAAATACAA
17906 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
17932 TACAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:17938 original size:22 final size:22
Alignment explanation
Indices: 17897--17941 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
17887 TAAAATGCCT
17897 AAAATACAAAAAAATAAAAATA
1 AAAATACAAAAAAATAAAAATA
*
17919 AAAATA-AAAATAATACAAAATA
1 AAAATACAAAAAAATA-AAAATA
17941 A
1 A
17942 GAACCAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (22 bp):
AAAATACAAAAAAATAAAAATA
Found at i:18103 original size:1 final size:1
Alignment explanation
Indices: 18097--18168 Score: 63
Period size: 1 Copynumber: 72.0 Consensus size: 1
18087 AACATTTTCA
* * ** * * * *
18097 TTTTTTTATTTTTTTATTTTTTTACTTTTTTATTTTTTGTTTTTTTTTTTTTTATTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
18162 TGTTTTT
1 TTTTTTT
18169 GACCAAAGCT
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.07, C:0.01, G:0.04, T:0.88
Consensus pattern (1 bp):
T
Found at i:18107 original size:8 final size:8
Alignment explanation
Indices: 18091--18156 Score: 91
Period size: 8 Copynumber: 8.5 Consensus size: 8
18081 CAACTCAACA
*
18091 TTTTCATT
1 TTTTTATT
18099 TTTTTATT
1 TTTTTATT
18107 TTTTTATT
1 TTTTTATT
*
18115 TTTTTACT
1 TTTTTATT
18123 TTTTTA-T
1 TTTTTATT
*
18130 TTTTTGTT
1 TTTTTATT
18138 TTTTT-TT
1 TTTTTATT
18145 TTTTTATT
1 TTTTTATT
18153 TTTT
1 TTTT
18157 GTTTTTGTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
7 13 0.25
8 40 0.75
ACGTcount: A:0.09, C:0.03, G:0.02, T:0.86
Consensus pattern (8 bp):
TTTTTATT
Found at i:18115 original size:16 final size:16
Alignment explanation
Indices: 18091--18156 Score: 91
Period size: 15 Copynumber: 4.2 Consensus size: 16
18081 CAACTCAACA
*
18091 TTTTCATTTTTTTATT
1 TTTTTATTTTTTTATT
*
18107 TTTTTATTTTTTTACT
1 TTTTTATTTTTTTATT
*
18123 TTTTTA-TTTTTTGTT
1 TTTTTATTTTTTTATT
18138 TTTTT-TTTTTTTATT
1 TTTTTATTTTTTTATT
18153 TTTT
1 TTTT
18157 GTTTTTGTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
15 24 0.55
16 20 0.45
ACGTcount: A:0.09, C:0.03, G:0.02, T:0.86
Consensus pattern (16 bp):
TTTTTATTTTTTTATT
Found at i:18157 original size:22 final size:22
Alignment explanation
Indices: 18097--18168 Score: 101
Period size: 22 Copynumber: 3.2 Consensus size: 22
18087 AACATTTTCA
18097 TTTTTTTATTTTTT-TATTTTTT
1 TTTTTTTATTTTTTGT-TTTTTT
18119 TACTTTTTTATTTTTTGTTTTTTT
1 T--TTTTTTATTTTTTGTTTTTTT
*
18143 TTTTTTTATTTTTTGTTTTTGT
1 TTTTTTTATTTTTTGTTTTTTT
18165 TTTT
1 TTTT
18169 GACCAAAGCT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
22 25 0.54
24 20 0.43
25 1 0.02
ACGTcount: A:0.07, C:0.01, G:0.04, T:0.88
Consensus pattern (22 bp):
TTTTTTTATTTTTTGTTTTTTT
Found at i:18270 original size:41 final size:41
Alignment explanation
Indices: 18176--18307 Score: 174
Period size: 41 Copynumber: 3.1 Consensus size: 41
18166 TTTGACCAAA
* * * *
18176 GCTCCTCTAAATAGAGGCTCAACGACTTTGAGAAACCTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-GTAAATT
*
18219 GCTCCCCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
* *
18260 GCTCCTCTAAACAGAGCCACCATGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAGTAAATT
18302 GCTCCT
1 GCTCCT
18308 TGACAAACAT
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
41 29 0.36
42 25 0.31
43 26 0.32
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
Found at i:19346 original size:8 final size:8
Alignment explanation
Indices: 19335--19402 Score: 75
Period size: 8 Copynumber: 7.9 Consensus size: 8
19325 CTTTTTTTTC
19335 TTTTTCAT
1 TTTTTCAT
19343 TTTTTCAT
1 TTTTTCAT
19351 TTTTTCAT
1 TTTTTCAT
19359 CATTTTTCATT
1 --TTTTTCA-T
19370 TTTTTCATT
1 TTTTTCA-T
19379 TTTTTCACCT
1 TTTTTCA--T
19389 TTTTT-AT
1 TTTTTCAT
19396 TTTTTCA
1 TTTTTCA
19403 AGCATAGTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 10
0.83 0.02 0.15
Matches are distributed among these distances:
7 6 0.11
8 17 0.31
9 17 0.31
10 13 0.24
11 1 0.02
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTTCAT
Found at i:19373 original size:27 final size:27
Alignment explanation
Indices: 19335--19400 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
19325 CTTTTTTTTC
19335 TTTTTCA-TTTTTTCA-TTTTTTCATCA
1 TTTTTCATTTTTTTCATTTTTTTCA-CA
*
19361 TTTTTCATTTTTTTCATTTTTTTCACC
1 TTTTTCATTTTTTTCATTTTTTTCACA
*
19388 TTTTTTATTTTTT
1 TTTTTCATTTTTT
19401 CAAGCATAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 7 0.19
27 21 0.58
28 8 0.22
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (27 bp):
TTTTTCATTTTTTTCATTTTTTTCACA
Found at i:19382 original size:18 final size:17
Alignment explanation
Indices: 19335--19402 Score: 77
Period size: 18 Copynumber: 3.9 Consensus size: 17
19325 CTTTTTTTTC
19335 TTTTTCATTTTTTCA-T
1 TTTTTCATTTTTTCATT
19351 TTTTTCATCATTTTTCATT
1 TTTTTCAT--TTTTTCATT
*
19370 TTTTTCATTTTTTTCACCT
1 TTTTTCA-TTTTTTCA-TT
19389 TTTTT-ATTTTTTCA
1 TTTTTCATTTTTTCA
19403 AGCATAGTAT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
16 8 0.17
17 8 0.17
18 15 0.33
19 14 0.30
20 1 0.02
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTCATTTTTTCATT
Found at i:22925 original size:19 final size:19
Alignment explanation
Indices: 22876--22925 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
22866 TATTTATATG
22876 TATTTTATTTA-TATAGTTA
1 TATTTT-TTTATTATAGTTA
*
22895 TATATTTATTATTATA-TTA
1 TAT-TTTTTTATTATAGTTA
22914 TAATTTTTTTAT
1 T-ATTTTTTTAT
22926 CTTGTAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 17 0.65
20 9 0.35
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (19 bp):
TATTTTTTTATTATAGTTA
Found at i:22987 original size:39 final size:39
Alignment explanation
Indices: 22944--23032 Score: 119
Period size: 39 Copynumber: 2.3 Consensus size: 39
22934 ATTTTTTGGA
22944 TTTATCTTATTTTATTTTT-GATTATCTG-TTATTATTTTT
1 TTTAT-TT-TTTTATTTTTCGATTATCTGATTATTATTTTT
* *
22983 TTTATTTTTTTCTTTTTCGTTTATCTGATTATTATTTTT
1 TTTATTTTTTTATTTTTCGATTATCTGATTATTATTTTT
*
23022 TTTTTTTTTTT
1 TTTATTTTTTT
23033 TGAGGCTGTG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
37 9 0.20
38 10 0.22
39 26 0.58
ACGTcount: A:0.13, C:0.06, G:0.04, T:0.76
Consensus pattern (39 bp):
TTTATTTTTTTATTTTTCGATTATCTGATTATTATTTTT
Found at i:23931 original size:10 final size:10
Alignment explanation
Indices: 23904--23980 Score: 63
Period size: 10 Copynumber: 7.6 Consensus size: 10
23894 TCTGTTACCT
23904 ATTTTATTTTA
1 ATTTT-TTTTA
23915 A--TTTTTTA
1 ATTTTTTTTA
23923 ATTTTTTTTA
1 ATTTTTTTTA
23933 ATTTTATTTTTTA
1 A--TT-TTTTTTA
*
23946 ATTTTGTTT-
1 ATTTTTTTTA
23955 ATTTTCTTTT-
1 ATTTT-TTTTA
*
23965 ATTTTTTTTT
1 ATTTTTTTTA
23975 ATTTTT
1 ATTTTT
23981 CAACTTTTAT
Statistics
Matches: 57, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
8 6 0.11
9 11 0.19
10 27 0.47
11 3 0.05
12 2 0.04
13 8 0.14
ACGTcount: A:0.18, C:0.01, G:0.01, T:0.79
Consensus pattern (10 bp):
ATTTTTTTTA
Found at i:23931 original size:23 final size:22
Alignment explanation
Indices: 23905--23979 Score: 91
Period size: 23 Copynumber: 3.4 Consensus size: 22
23895 CTGTTACCTA
23905 TTTTATTTTAATTTTTTAATTTT
1 TTTTATTTT-ATTTTTTAATTTT
23928 TTTTAATTTTATTTTTTAATTTT
1 TTTT-ATTTTATTTTTTAATTTT
* * *
23951 GTTTA-TTT-TCTTTTATTTTT
1 TTTTATTTTATTTTTTAATTTT
23971 TTTTATTTT
1 TTTTATTTT
23980 TCAACTTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
20 14 0.30
21 6 0.13
22 1 0.02
23 20 0.43
24 5 0.11
ACGTcount: A:0.17, C:0.01, G:0.01, T:0.80
Consensus pattern (22 bp):
TTTTATTTTATTTTTTAATTTT
Found at i:23975 original size:37 final size:37
Alignment explanation
Indices: 23928--24011 Score: 98
Period size: 37 Copynumber: 2.2 Consensus size: 37
23918 TTTTAATTTT
* * *
23928 TTTTAATTTTATTTTTTAA-TTTTGTTTATTTTCTTTTA
1 TTTT-ATTTTATTTTTCAACTTTTATTTATTTTC-ATTA
* *
23966 TTTTTTTTTATTTTTCAACTTTTATTTGTTTTCATTA
1 TTTTATTTTATTTTTCAACTTTTATTTATTTTCATTA
24003 TTTTATTTT
1 TTTTATTTT
24012 CTTAAATAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
37 23 0.59
38 16 0.41
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (37 bp):
TTTTATTTTATTTTTCAACTTTTATTTATTTTCATTA
Found at i:24114 original size:60 final size:59
Alignment explanation
Indices: 24033--24427 Score: 489
Period size: 60 Copynumber: 6.6 Consensus size: 59
24023 TAAAAAATAT
24033 ATATTTTTGGGCGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTCAAAAAA
1 ATATTTTTGGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCAAAAAA
** * * * *
24092 AGGGTTTATGGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTTCCAAAAA
1 A-TATTTTTGG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAG-TTTCAAAAAA
* *
24154 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTCAAAAAA
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCAAAAAA
* *
24213 A-AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAA-TTTCCAAAAAAAA
1 ATA--TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTT-C--AAAAAA
*
24275 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC-AAAAA
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCAAAAAA
* * * *
24332 ATCAATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT--AAATTAAAGTTTCAAAAGA
1 AT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATCAAAGTTTCAAAAAA
*
24392 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
24428 CTGCGCAAGA
Statistics
Matches: 294, Mismatches: 26, Indels: 33
0.83 0.07 0.09
Matches are distributed among these distances:
57 7 0.02
58 36 0.12
59 54 0.18
60 126 0.43
61 53 0.18
62 17 0.06
63 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (59 bp):
ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTTCAAAAAA
Found at i:24178 original size:120 final size:118
Alignment explanation
Indices: 24033--24427 Score: 595
Period size: 120 Copynumber: 3.3 Consensus size: 118
24023 TAAAAAATAT
* *
24033 ATATTTTTGGGCGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCAAAAAAAGGGTT
1 ATATTTTTGGG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAGGTT
*
24098 TATGGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTTCCAAAAA
65 T-TTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAG-TTTCCAAAAA
24154 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTTCAAAAAAAAGGTT
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAAAAAGGTT
*
24219 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAA-TTTCCAAAAAAAA
65 TTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC---AAAAA
24275 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAATCAA--T
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA--AAGGT
*
24338 TTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT--AAATTAAAGTTT-CAAAAGA
64 TTTTGAGGAAAAGTTGAAAGTATCAATCTTCCT-TGAAAATCAAAGTTTCCAAAA-A
*
24392 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
24428 CTGCGCAAGA
Statistics
Matches: 258, Mismatches: 7, Indels: 22
0.90 0.02 0.08
Matches are distributed among these distances:
116 4 0.02
117 36 0.14
118 5 0.02
119 8 0.03
120 123 0.48
121 80 0.31
122 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (118 bp):
ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAGGTTT
TTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCCAAAAA
Found at i:25157 original size:26 final size:26
Alignment explanation
Indices: 25121--25173 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25111 CCGGTCCGAT
*
25121 CTTAGATTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
25147 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
25173 C
1 C
25174 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:27395 original size:853 final size:853
Alignment explanation
Indices: 25147--30458 Score: 4727
Period size: 853 Copynumber: 6.0 Consensus size: 853
25137 ACTTCGTATG
* *
25147 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG-TTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTT-AG
* * * *
25211 CCGACCAGAGGGGCAGGATGCGCAAGTCGGTGATCGATCGGGTCCCCCTCTA-CGTGCTGCCGAT
65 CCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGAACGGGTCCCCCTCTAGCGTGCTGCCAAT
* * * * * *
25275 CCTACTGTCGCAACCCTCCGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
130 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *** * *
25340 AACCGATGAAATGAGCTGGTGGGTGGGTGGGCACTACACCGGCCAAAGAGGCGGGATGCGCAAGT
195 AACCGATGAAACGAGC----------G-GGGCACTACGTAGGCCAGAGAGGCGGGATGCGCAAGC
* * * * *
25405 TGTGGATCGAGAGGGTGGTAGGTGGGTTTAGGCT-CATCTTCATATATCTACCGTGCCAATGCCA
249 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGG-TACATCTTCATATTTCTACCTTGCCAATGCCA
* *
25469 TTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGAC
313 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
25534 AATTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGACTTTTTTAAAAATTTT
378 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTAAAAATTTT
* *
25599 TT-AGAAGGATTTTTAGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
442 TTCAGAAGGATTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
25663 AAAATTCAGCTAAACACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTT
507 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
25728 CAGACACTTTAATGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCA
572 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
25793 GTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAAGGCCAAGTACCAGCACCCATTGCACA
637 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
25858 TCATGTGTGCACACCCCCCACCCCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAGGTTTTCCG
702 TCATGTGCGCACACCCCCC-GCCCCCCAATCGTCGGAACCCCAAT---GCCAGTCA-G--TT-CG
* * * * * *
25923 ACGATGCTCCGGCGATGGTGCCTCAGGTGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAG
759 --G-TTCTCCGACGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAG
* * *
25988 CATGTGCACCTGCAA-CTTTCGGTCCGATCCGAT
821 CATGTGCACCTGCAATCCTT-GATCCGGTCCGAT
* * * * * *
26021 CTTAGACAGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGCGCAAGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTTAGC
* * *
26086 CGGCCAGAGGGGCAGGATGCGCAAGTAGGGGATC-AACCGGGTCCACCTCT-GCATGCTGCCAAT
66 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGAA-CGGGTCCCCCTCTAGCGTGCTGCCAAT
* ** * ** * ** *
26149 CTTATTACCGTAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATG-CTAAGCC
130 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * *
26213 AACCGATAAAACGAGCGGGCGGACGGGCGGGCACTATGCCGACCAGAGAGGTGGGATGCACAAGC
195 AACCGATGAAACGAGCGGG-GCAC-TAC--G---TA-G--G-CCAGAGAGGCGGGATGCGCAAGC
**
26278 CGTGGATCAATAGGGTGGTAGGTGGGTTTA-GTCACATCTTCATATTTCTACCTTGCCAATGAAA
249 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGT-ACATCTTCATATTTCTACCTTGCCAATGCCA
* * * * * * * *
26342 TTTTTATGGCCTGCAAATTGATACAATGGTCCCTTAAACCTTTATTTGAAGTTGCATAGCAAGAC
313 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * * *
26407 GACTCGATTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTCTT
378 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTT
* * *
26472 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTTTTGGCACGCACAAA
443 TCAGAAGGATTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
26537 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
507 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
26602 TAGACACTTTAATGGCTACTAGCAACAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGA
572 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
26667 GTTCTGGAGGTTTGAT-ATGGAATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATTGCAC
637 GTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
26731 ATCATGTGTGCACACCCCCTCGGCCCCCCCAATCGCCGGAACCCCAATGTC-GTTAG-TCGGTTC
701 ATCATGTGCGCACACCCCC-C-G-CCCCCCAATCGTCGGAACCCCAATGCCAGTCAGTTCGGTTC
* * * *
26794 TCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCTCAAGCCCAGCATTTGC
763 TCCGACGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
26859 ACCCGCAATCCTTGGTTCGGTCTGAT
828 ACCTGCAATCCTTGATCCGGTCCGAT
* *** * * *
26885 CTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAAAAAAATGAAATGAGCGTGCGGGCGTTTAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAATGAGCGTGCAGGCGCTTAG
* * * ** *
26950 CCGGCTAGAAGGGCAGGATGCGCAAGTCGGGGATGGGCCGGGTCCCCCT-TAGTGTGCTGCCAAT
65 CCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGAACGGGTCCCCCTCTAGCGTGCTGCCAAT
*
27014 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
130 CCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
27079 AATCGATGAAATGAGC-GGGCACTACGTAGGCCAGAGAGGTGGGATGCGTAA-CCGTGGATCAAT
195 AACCGATGAAACGAGCGGGGCACTACGTAGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAAT
* * * * *
27142 AGAGTGGTGGGTGGGTTTAGGTACATATTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
260 AGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCTTGCCAATGCCATTTTTATGGCTT
* * *
27207 GTAAATTCATACAATGGTCCCTTAAGCCGTCATGTGAAGTTTGATGGCAAGACGACTCCTTTTCT
325 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
27272 ATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTT
390 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGATTT
* *
27337 TTGGTCCCAAACATGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
455 TTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
27402 AAAACTCAAAGTGTACAGGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
519 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * * *
27467 CGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGAGTGAGTTCTCAAGGTT
584 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
27532 TGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCAT
649 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--
* * * * * **
27597 ACCCCCCCCGCCCCCCAATCGTCGGAACCTCAATACC-GTCGGTTAGGTTCTCCGGTGATGGTGC
712 ACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCAGTCAGTTCGGTTCTCCGACGATGGTGC
* * * * *
27661 CTCGGGCG-AAAAAAATACGGCACCAACATATGCCCGAGCGCAGTATGTGCACCTGCAATCCTTG
777 CCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAATCCTTG
*
27725 ATCCGGTCTGAT
842 ATCCGGTCCGAT
* *
27737 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAGACTTGGAA
1 CTTAGACTGGGAATGAACTCCGTATGC-----CTA--AGTCAAC-CC--A--C---GA-----AA
* * ** * ** *** * * **** * *
27802 TGAAC-T-CCGTATGCTTAGACTGGGAATGA-ACTCCGTATGC-CTAAGTCAACCCA-CAAAATG
46 TGAGCGTGCAG-GCGCTTAG-CCGGCCA-GAGGGGCAGGATGCGC-AAGTC-GGGGATC-GAACG
* * ** * * * ** * *
27862 AGCGTACGGGCCCTCCA-C---CTGCCAGATGGGCAGGATG-CGCAAGCCGGGGAT-TGGTCGGG
105 -G-GT-C--CCCCTCTAGCGTGCTGCCA-AT---CCTGCTGCCACAACCCTCGG-TCTGGTCTGA
*** ** * * * * * *
27921 TCCCCCTTAG-CGTCCTACCG-A-TCC-TACTGCCATAACCCTCGATCTGGCCTG-ATCTTAGAT
160 T----CTTAGAC-TGGGAATGAACTCCGTA-TGCC-TAA-GC-C-AAC-CG-ATGAAAC---GAG
* * * * * * **
27981 TGGGAATGAACTCCGTATTTCTAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGAGCAC-TAC
210 CGGG---GCACTACG------TAGGCC-A--GA-G--A-G-GCGGG-ATGC--GCAAGC-CGTGG
* *** * * * * ** ** ** **** *
28045 ACCGGCCAGAGAGGCAGGATGCGCAAGTCGT-GG-ATCGATAGGGTGGTAGGT-GGGTTTAGGCA
254 ATC-AATAGGGTGGTAGG-TG-G---GT-TTAGGTA-C-AT--CTTCATATTTCTACCTT-GCCA
* * * ** * * **
28107 CAT-CTTCATATTTCTACCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
307 -ATGC--CAT-TTT-TA---TGGC-TTG-TAAATTCAT-AC-----AA-TGGT--------CCCT
* * * * *
28171 TAAGCCTTCATGTGATGTTTCGTGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAAATT
347 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
28236 TTTTACGGTTCAAGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTAGCCCTAAACTTGGTAGACG
412 TTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGATTTTTGGCCC-AAACTTGGTAGACG
* * * *
28301 TGATCCTTGTATTTTTTTTGGCATGCGCAAAACAATTCAGCTAAAAACTCAAACTGTACAGGATT
476 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* * * * * * *
28366 TTGTGACCAATTGAAAACAGTGTCCCCATTTCAGAAACTTTAATGGCTATTAGTAGCAAACCTAT
541 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* ** * *
28431 AAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAAGGGGCCGAT
606 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
28496 ATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCCCCTGCCCCCCAATCGTC
671 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCAATCGTC
* * * * *
28561 GGAACCCCAATG-CTGTCGGTTAGGTTATCC-AGCGATGGTGCCCCGGGCG-AAAACAATACGGC
735 GGAACCCCAATGCCAGTCAGTTCGGTTCTCCGA-CGATGGTGCCCCGGGCGAAAAAAAATACGGC
* * ** ** * *
28623 ACTAGCACATGCCTGAGCATAGCATGTGCACCTATAACCCTTGATCCGATCCGAT
799 ACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAATCCTTGATCCGGTCCGAT
* * * * * *
28678 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCATGCCCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTTAGC
* * * * *
28743 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTGCCCCTC-AGTGTGCTGTCGATC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGAACGGGTCCCCCTCTAGCGTGCTGCCAATC
* ** * * * *
28807 CGGCTATCACAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* **
28872 ACCGACGAAACGAGCGGGCGGGTGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
196 ACCGATGAAACGA----GC-----GG--GGCACTACGTAGGCCAGAGAGGCGGGATGCGCAAGCC
* * * * *
28937 ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATT
250 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCTTGCCAATGCCATT
** * * * *
29002 TTTATGTATTGTAAATTCATACAATGATCCCTTGAGCCTTCATGTGAAGTTTCATAGCAAGATGA
315 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
29067 CTAC-TTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTT
380 CT-CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTT
* * * *
29131 CAGAAGGATTTTTGGCAGCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAA
444 CAGAAGGATTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * * *
29196 AAATTCAGCCAAAAACTCGAAGTGTACAGGATTTTGCGACCATTTGAAAAATGTGTCCCCATTTA
508 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
29261 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
573 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
29326 GTCTTGAGGTTTGATGATGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
638 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
29391 CATGTGTGCACACCCCCCCGCCCCTGCAATCATCGAAACCCCAATGCC-GTC-GGTCAGGTTCTT
703 CATGTGCGCACA-CCCCCCGCCCC-CCAATCGTCGGAACCCCAATGCCAGTCAGTTC-GGTTCTC
* * **
29454 CGATGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCTTGCATGTGCAC
765 CGACGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
29519 CTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
830 CTGCAA---TC---C---T-TGATC-----C---G---G---TCCG-AT
* * * *
29568 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCTGGTGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTTAG
* * * *
29633 CCGACCAGAGGGGCAGGATGAGCAAGCCGGGGATCGGACGGGTCCCCCT-TAGCGTGCTGCCAAT
65 CCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGAACGGGTCCCCCTCTAGCGTGCTGCCAAT
* ** * *
29697 CCTGCTGCCACAACCTTTAGTCT-GTTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
130 CCTGCTGCCACAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
29761 CAACCGATGAAACAAGCGGGCGAGCGGGCGGGCACTACGCT-GGCCAGAGAGGTGGGATGCACAA
194 CAACCGATG--A-AA-----CGAGC--G-GGGCACTACG-TAGGCCAGAGAGGCGGGATGCGCAA
* * * * * *
29825 GCCATGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATGTTCATATTTCTGCCTTGCCAATGCC
247 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCTTGCCAATGCC
* *
29890 ATGTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGA
312 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
** *
29955 CGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
377 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTT
* * * *
30020 TTCAGAAGGATTTTTGGGTCCAAATTTGGTAGACGTGATCCTTGTA-TTTTTTAGGCATGCATAA
442 TTCAGAAGGATTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
30084 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTAACCATTTGAAAAAAGTGTCCCTATT
506 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
30149 TTAGACACTTTAATGCCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
571 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
30214 AGTTCTCGAGGTTTGATGAGGGATAAGAGGCCAATATAAGTGCCAAATACCAGCACCCATCGCAC
636 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
30279 ATCATGTGCGCACACCCCCATCGCCCCCCAATCGCCAGAACCCTAAT-CCAGCCAG-TCAGGTTC
701 ATCATGTGCGCACACCCCC--CGCCCCCCAATCGTCGGAACCCCAATGCCAGTCAGTTC-GGTTC
* * ** * *
30342 TCC-AGCGATGGTGCCCCGAGC-AAAAAAAATGCTACACCAGCACTTGCCCGAGCCTAGCATGTG
763 TCCGA-CGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
30405 CACCCGTAACCCTCGATCCGGTCCGAT
827 CACCTGCAATCCTTGATCCGGTCCGAT
* *
30432 CTTAGACTAGGAATGAACTTCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
30459 TTAGATTGAG
Statistics
Matches: 3603, Mismatches: 603, Indels: 475
0.77 0.13 0.10
Matches are distributed among these distances:
852 109 0.03
853 438 0.12
854 23 0.01
855 8 0.00
857 4 0.00
858 4 0.00
859 2 0.00
861 2 0.00
862 2 0.00
863 365 0.10
864 164 0.05
865 172 0.05
866 22 0.01
867 2 0.00
868 3 0.00
869 2 0.00
870 8 0.00
871 28 0.01
872 27 0.01
873 210 0.06
874 404 0.11
875 11 0.00
876 22 0.01
877 20 0.01
878 13 0.00
879 12 0.00
880 9 0.00
881 9 0.00
882 1 0.00
883 5 0.00
884 5 0.00
885 5 0.00
886 3 0.00
887 10 0.00
888 3 0.00
889 60 0.02
890 257 0.07
891 425 0.12
892 4 0.00
893 3 0.00
894 4 0.00
895 12 0.00
896 8 0.00
897 5 0.00
898 4 0.00
899 8 0.00
900 3 0.00
901 2 0.00
903 2 0.00
904 3 0.00
905 6 0.00
906 4 0.00
907 4 0.00
908 5 0.00
909 6 0.00
910 10 0.00
911 11 0.00
912 6 0.00
913 13 0.00
914 11 0.00
915 23 0.01
916 4 0.00
917 4 0.00
918 14 0.00
919 3 0.00
920 8 0.00
921 22 0.01
922 9 0.00
923 1 0.00
925 3 0.00
926 4 0.00
927 5 0.00
928 1 0.00
929 1 0.00
931 1 0.00
933 4 0.00
934 7 0.00
936 3 0.00
940 9 0.00
941 139 0.04
942 335 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (853 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTTAGC
CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGAACGGGTCCCCCTCTAGCGTGCTGCCAATC
CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGATGAAACGAGCGGGGCACTACGTAGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATA
GGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACCTTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGATTTT
TGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGCCCCCCAATCGTCGGAACCCCAATGCCAGTCAGTTCGGTTCTCCGACGATGGTGCCCCG
GGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAATCCTTGATCC
GGTCCGAT
Found at i:27766 original size:26 final size:26
Alignment explanation
Indices: 27737--27841 Score: 192
Period size: 26 Copynumber: 4.0 Consensus size: 26
27727 CCGGTCTGAT
27737 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27763 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
27789 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27815 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27841 C
1 C
27842 CTAAGTCAAC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29579 original size:26 final size:26
Alignment explanation
Indices: 29543--29595 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
29533 CTGGTCTGAT
29543 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
29595 C
1 C
29596 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:29984 original size:891 final size:889
Alignment explanation
Indices: 28678--30503 Score: 2617
Period size: 891 Copynumber: 2.1 Consensus size: 889
28668 CCGATCCGAT
* ** * *
28678 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTGTGCATGCCCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCATGCCCTCAGC
* * * * * * *
28743 CGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTGCCCCTCAGTGTGCTGTCGATCC
66 CGACCAGAGGGGCAGGATGAGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGCCAATCC
* *
28808 GGCTATCACAACCCTTGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 GGCTACCACAACCCTTGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
28873 CCGACGAAACGAGCGGGCGGGTGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCA
196 CCGACGAAACAAGCGGGCGAGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCA
* * *
28938 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTT
261 TGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATGT
* ** *
29003 TTATGTATTGTAAATTCATACAATGATCCCTTGAGCCTTCATGTGAAGTTTCATAGCAAGATGAC
326 TTATGGATTGTAAATTCATACAATGATCCCTCAAGCCTTCATGTGAAGTTTCATAGCAAGACGAC
* *
29068 TACTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAATTTTTTCA
391 TACTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCA
* *
29133 GAAGGATTTTTGGCAGCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
456 GAAGGATTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTT-TAGGCATGCAAAAAAAA
* *
29198 ATTCAGCCAAAAACTCGAAGTGTACAGGATTTTGCGACCATTTGAAAAATGTGTCCCCATTTAAG
520 ATTCAGCCAAAAACTCGAAGTGTACAGGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTAAG
* *
29263 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGT
585 ACACTTTAATGCCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGT
* * * * * *
29328 CTTGAGGTTTGATGATGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
650 CTCGAGGTTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCA
* * ** * * *
29393 TGTGTGCACACCCCC-CCGCCCCTGCAATCATC-GAAACCCCAATGCC-GTCGGTCAGGTTCTTC
715 TGTGCGCACACCCCCACCGCCCC-CCAATCGCCAG-AACCCCAAT-CCAGCCAGTCAGGTTCTCC
* * * *
29455 -GATGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCTTGCATGTGCAC
777 AG-CGATGGTGCCCCGAGC-AAAAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCAC
* * * *
29519 CTGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
840 CCGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
* **
29569 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGC-TGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAT-GCCCTCAG
*
29633 CCGACCAGAGGGGCAGGATGAGCAAGCCGGGGATCGGA-CGGGTCCCCCTTAGCGTGCTGCCAAT
65 CCGACCAGAGGGGCAGGATGAGCAAGCCGGGGATC-GATCGGGTCCCCCTCAGCGTGCTGCCAAT
* * * * * *
29697 CCTGCTGCCACAA-CCTTTAGTCTGTTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCGGCTACCACAACCCTTGA-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
29761 CAACCGATGAAACAAGCGGGCGAGCGGGCGGGCACTACGCTGGCCAGAGAGGTGGGATGCACAAG
193 CAACCGACGAAACAAGCGGGCGAGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAG
* * *
29826 CCATGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATGTTCATATTTCTGCCTTGCCAATGCCA
258 CCATGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
* * *
29891 TGTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGAC
323 TGTTTATGGATTGTAAATTCATACAATGATCCCTCAAGCCTTCATGTGAAGTTTCATAGCAAGAC
*
29956 GACT-CGTTTTCTATTTTTCATA-ATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTT
388 GACTAC-TTTTCTATTTTTCA-AGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTT
** * * *
30019 TTTCAGAAGGATTTTTGGGTCCAAATTTGGTAGACGTGATCCTTGTATTTTTTAGGCATGCATAA
451 TTTCAGAAGGATTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTAGGCATGCAAAA
* * *
30084 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTAACCATTTGAAAAAAGTGTCCCTATT
516 AAAAATTCAGCCAAAAACTCGAAGTGTACAGGATTTTGCAACCATTTGAAAAAAGTGTCCCCATT
*
30149 TTAGACACTTTAATGCCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TAAGACACTTTAATGCCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
30214 AGTTCTCGAGGTTTGATGAGGGATAAGAGGCCAATATAAGTGCCAAATACCAGCACCCATCGCAC
646 AGGTCTCGAGGTTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAATACCAGCACCCATCGCAC
* *
30279 ATCATGTGCGCACACCCCCATCGCCCCCCAATCGCCAGAACCCTAATCCAGCCAGTCAGGTTCTC
711 ATCATGTGCGCACACCCCCACCGCCCCCCAATCGCCAGAACCCCAATCCAGCCAGTCAGGTTCTC
* *
30344 CAGCGATGGTGCCCCGAGCAAAAAAAATGCTACACCAGCACTTGCCCGAGCCTAGCATGTGCACC
776 CAGCGATGGTGCCCCGAGCAAAAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCACC
* *
30409 CGTAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTTCGTATG
841 CGCAACCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
* * * * *
30458 CTTAGATTGAGAATGAACTCCGTATCCCTAAGTCAACGCATGAAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
30504 AAGCGTGCGG
Statistics
Matches: 828, Mismatches: 98, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
889 127 0.15
890 256 0.31
891 442 0.53
892 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (889 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCATGCCCTCAGC
CGACCAGAGGGGCAGGATGAGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGCCAATCC
GGCTACCACAACCCTTGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACAAGCGGGCGAGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCA
TGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATGT
TTATGGATTGTAAATTCATACAATGATCCCTCAAGCCTTCATGTGAAGTTTCATAGCAAGACGAC
TACTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCA
GAAGGATTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTTAGGCATGCAAAAAAAAA
TTCAGCCAAAAACTCGAAGTGTACAGGATTTTGCAACCATTTGAAAAAAGTGTCCCCATTTAAGA
CACTTTAATGCCTAATGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTC
TCGAGGTTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCACCGCCCCCCAATCGCCAGAACCCCAATCCAGCCAGTCAGGTTCTCCAGCG
ATGGTGCCCCGAGCAAAAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAA
CCCTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:31002 original size:26 final size:26
Alignment explanation
Indices: 30973--31025 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30963 CTGGTCCGAT
30973 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
30999 CTTAGACTTGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
31025 C
1 C
31026 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:34795 original size:874 final size:871
Alignment explanation
Indices: 31401--35246 Score: 4822
Period size: 863 Copynumber: 4.4 Consensus size: 871
31391 TTTTCTATTT
* ** * *
31401 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGTTTAATGGTAG
1 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
31466 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTC-TGGTTTGATGAGGGATA
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCAAGGTTTGATGAGGGATA
* * *
31530 GGGGGCCAA-ACAAGGGCCAAGAACCAGAACCCATCGCACATCATGTGCGCACACCCCCT-GGCC
130 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-C
* * * * * ** *
31593 CCCCTAATCGTCGGAACCCCAATTCCGGT-AGTCAGGTTCTTCGATGATGCTTTGACGATAGTGC
194 CCCCTAATCGTCGGAACCCTAATGCC-GTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-
* * * * *
31657 CCCGGGTGAAAAAAATACGGTACCAACACATGCCCGAGCCTAGCATGTACAGCCGCAACCGTCGG
257 CCCGGGTGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CC-CAACCCTCGG
* * *
31722 TCTCATCCGATCTTGGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGC
320 TC-CATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGC
** * * * * * * * * *
31787 GGGTGCTCAACC-GACCAGAGGGGCAGGATGCGGAAGCCGGGGATCGATCGAGTCCCCATCAGTG
384 GGGCACTCAGCCAGA-CAGAGGGGTAGGATGCGCAAGCCAGGGATCAACCGGGTCCCCCTCAGCG
** * ** * * *
31851 TGCTGTTGATCCTGCTATCGCAACCCTCAGTCCAGTCCGATCTTACACTAGGAATGAACTCCGTA
448 TGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
31916 TGCCTAAGCCAACTTACGAAATG-A-------GCGGGCGGGCACTACGTCGGCCAGAGAGACGGG
513 TGCCTAAGCCAACTAACAAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * *
31973 ATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTG
578 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTGCCATG
* * *
32038 CCAATGCCATTTTTTTGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCATATGAAGTTTCA
643 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * *
32103 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGA-TTTTTT
708 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTAGGAGATTTTT
*
32167 TTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGG
772 TTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGG
* *
32232 CATGCATAAAAAAGA-TCAGCTAAAAGCTCGAAGTG
837 CATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTG
* *
32267 TACAGGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGTTACTGGCAG
1 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
**
32332 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* *
32397 GGGGCCAATTTAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCC
* * * * * * **
32461 CCTCAATCGTCGGAACCCAAATGCCATCGATCAGGTTCTCTGGCAATGCTCCGGTGATGGTGGCC
196 CCT-AATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT-GCC
* * * ** * *
32526 TGGGTGAAAAAAAATGCAGCACCAGCACATGCTTGAGGCCAACATGTGCACCCGCAACCCTCGGT
259 CGGGTG-AAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CC-CAACCCTCGGT
* *
32591 CCAGTCCGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAACGCACG--A-AA-----C-
321 CCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCG
* * * *
32647 -G-----A---AG--AGA--GGTAGGATGCGCAAG-CTGAGGATCGATCGGGTCCCCCTCAGCAT
385 GGCACTCAGCCAGACAGAGGGGTAGGATGCGCAAGCCAG-GGATCAACCGGGTCCCCCTCAGCGT
* * *
32698 GCTACCAATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
449 GCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * *
32763 GCCTAAGCCAA-TCGACAAAATGAGCAGGTGAGCGGGAGGGCGGGCGGGCACTACGCCGGCCAGA
514 GCCTAAGCCAACT-AAC-AAA--A-C----GAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
* * * *
32827 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGTTGTTTGGTGGGTTTAGGCACATCTTCATATTT
570 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTT
* * *
32892 CTGCCACGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCTCTTAAGCCTTCATGTG
635 CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
*
32957 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAAC-TTTTACGGTTCGG
700 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTG-AAACTTTTTACGGTTAGG
*
33021 -GATTTTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTA
764 AGATTTTTTT--AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
33085 TTATTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
827 TTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
33130 CACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAG
1 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
33195 CAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTGCTCGAGGTTTGATGAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* * * *
33260 GGAGCCAATATAAGGGCCAAGTACCAGCATCCATCGCATATCATGTGCGCACACTCCCCCCGGCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCTCGGCC
* * * * **
33325 GCCCCAATCGTCGGAATCCTAATGCCGTCGGTCAAGTTCTTCGGTGATGCT---ACGATGGTGCC
195 -CCCTAATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-C
* * * *
33387 CCGGGCGAAAAAAATATGACACGAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGT
258 CCGGGTGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC--AACCCTCGGT
* * * * * *
33452 CTGATCCAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCT
321 C-CATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCG
** * *
33517 GGCACTCAGCCACCCAGAGGGGAAGGATGCGCAAGCCAGGGATCAGCCGGGTCCCCCTCAGC--G
385 GGCACTCAGCCAGACAGAGGGGTAGGATGCGCAAGCCAGGGATCAACCGGGTCCCCCTCAGCGTG
* * *
33580 -T---G---CTGCT---GCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATG
450 CTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
33635 CCTAAGCCAACCGAA-AAAATGAGCGGGCGGGCGGGCGAGCACTACACCGGCCAGAGAGGCGGGA
515 CCTAAGCCAA-CTAACAAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGA
* * * * ** *
33699 TGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAA-GCACATCTTGATATTTCTACTGTT
579 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTAAGGCACATCTTCATATTTCTGCCATG
** *
33763 TTAATGCCATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
643 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * *
33828 TGGCAAGAC-ATTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATT-CGAGATTTTTT
708 TGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTAGGAGATTTTTT
* ** *
33891 TAAATTTTTTCAGACGGAGTTTTGGCCCCAAACTTCTTAGACGTGGTCCTTGTATTTTTGTGGGC
773 TAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGC
*
33956 ATGCACAAAAAAATTTAGCTAAAAACTCGAAGTG
838 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
33990 TATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
1 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
34055 CAAACCTGTAAAATCTAAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAT
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
* ** * *
34120 GGAGCCAATATAAGGGCCAAGTTGCAGCACCCATCGCACATCATGTGCACATACTCCCCTCGGCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCTCGGCC
* *
34185 CCCTAATCGTCAGAACTCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
195 CCCTAATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* *
34250 GTGGCGAAAAAAATTACGGCACCAGCACATTCCCGAGCCCAGCATGTGCACCACAACCCTCGGTC
260 G-GGTGAAAAAAA-TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC-CAACCCTCGGTC
* * *
34315 CGATCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCTTGCGG
322 C-ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGG
*
34380 GCACTCAGCCAGACAGAGGGGTAGGATGCACAAGCCAGGGATCAACCGGGTCCCCCTCAGCGTGC
386 GCACTCAGCCAGACAGAGGGGTAGGATGCGCAAGCCAGGGATCAACCGGGTCCCCCTCAGCGTGC
* * *
34445 TGCCGATCCTGCTACCGTAACCTTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTTCGTATG
451 TGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATG
* * ****
34509 CCTAAGCCAACTAACGAAACGAACGGGCGGGCAGGCGGGCACTACGTTACCCAGAGAGGCGGGAT
515 CCTAAGCCAACTAACAAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT
* * *
34574 GCGCAATCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTTTGTCATGCC
580 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTGCCATGCC
34639 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
645 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
*
34704 GCAAGACGACTCATTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTT-GGAGATTTTTTT-
710 GCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTAGGAGATTTTTTTA
*
34767 AATTTTTTCAGAAGGAGTTTTGGCCCCAAA-TTGGTAGACGTGATCCTTATATTTTTG-GGGCAT
775 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCAT
* *
34830 GCACAAAAAAATTCAGCTAAAAACTTGAAGTT
840 GCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * * * *
34862 TATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATAGCAACGGGCAG
1 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
34927 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAG
66 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
34992 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCC
131 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGG-CC
* * ** *
35056 CCCCAATCGTC-GAAACCTGAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTACC
195 CCCTAATCGTCGGAACCCT-AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT-GC
* *
35120 CCGGGTGAAAAAAATTACGACACCAGCACATGCCCGAGCCTAGCATGTGCACCCGTAACCCTCGG
258 CCGGGTGAAAAAAA-TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC--AACCCTCGG
* * * * *
35185 TCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
320 TCCA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
35247 GGCAGGCGGT
Statistics
Matches: 2589, Mismatches: 295, Indels: 186
0.84 0.10 0.06
Matches are distributed among these distances:
845 3 0.00
846 101 0.04
847 2 0.00
848 3 0.00
849 1 0.00
851 1 0.00
853 1 0.00
854 1 0.00
858 1 0.00
859 43 0.02
860 273 0.11
861 109 0.04
862 397 0.15
863 457 0.18
864 6 0.00
865 50 0.02
866 144 0.06
867 90 0.03
868 93 0.04
869 1 0.00
870 12 0.00
871 163 0.06
872 269 0.10
873 31 0.01
874 243 0.09
875 51 0.02
876 1 0.00
879 1 0.00
880 1 0.00
881 4 0.00
883 34 0.01
884 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCC
CCTAATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCG
GGTGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCAACCCTCGGTCCATC
CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACT
CAGCCAGACAGAGGGGTAGGATGCGCAAGCCAGGGATCAACCGGGTCCCCCTCAGCGTGCTGCCG
ATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACTAACAAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCATATTTCTGCCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTAGGAGATTTTTTTAAATTTT
TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTG
Found at i:35940 original size:26 final size:26
Alignment explanation
Indices: 35911--35963 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
35901 CCAGTCCGAT
35911 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
35937 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
35963 C
1 C
35964 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:37694 original size:163 final size:158
Alignment explanation
Indices: 37419--37777 Score: 407
Period size: 163 Copynumber: 2.2 Consensus size: 158
37409 ACTCCGTTTG
* * *
37419 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTATGGGCGCTCACC
1 CTTAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCATGAAACGAGCATATGGGCGCTCAAC
* * * *** *
37484 CGACTAGAGGGGCAGGATGCGTAAGCTGGGGATCGGTCGATTCCCCCTCAGCT-TGCTGCCGATC
65 CGACCAAAGGGGCAGGATGCGCAAGCCAAGGATCGGTCGAGTCCCCCTCAG-TGTGCTGCCGATC
* *
37548 CTGCTACCGTAACCCTCGGTCTAGTTTGATCTGAT
129 CTGCTACCGGAACCCTCGG-CCAG---G-TCTGAT
* * *
37583 CTTAGACTGGGAATGAACTCCTATGCCTAGGTCAACCCATTAAACGAGCATGTGGGCGCTCAACC
1 CTTAGACTGGGAATGAACTCCTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCGCTCAACC
* * * * *
37648 GGCCAAAGGGGCAGGATGTGCAGGCCAAGGATCGG-CTGGGTCCCCCTCAGTGTGCTGTCGATCC
66 GACCAAAGGGGCAGGATGCGCAAGCCAAGGATCGGTC-GAGTCCCCCTCAGTGTGCTGCCGATCC
* *
37712 TGCTGCCGGAACCCTCGGCCCGGTCTGAT
130 TGCTACCGGAACCCTCGGCCAGGTCTGAT
* *
37741 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
1 CTTAGACTGGGAATGAACTC-CTATGCCTAAGTCAAC
37778 TGACAAAACG
Statistics
Matches: 167, Mismatches: 25, Indels: 11
0.82 0.12 0.05
Matches are distributed among these distances:
158 26 0.16
159 14 0.08
162 4 0.02
163 103 0.62
164 20 0.12
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCTATGCCTAAGTCAACCCATGAAACGAGCATATGGGCGCTCAACC
GACCAAAGGGGCAGGATGCGCAAGCCAAGGATCGGTCGAGTCCCCCTCAGTGTGCTGCCGATCCT
GCTACCGGAACCCTCGGCCAGGTCTGAT
Found at i:38474 original size:26 final size:26
Alignment explanation
Indices: 38445--38497 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
38435 CCGGTCCGAT
38445 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
38471 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
38497 C
1 C
38498 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:41648 original size:890 final size:885
Alignment explanation
Indices: 37583--42616 Score: 6198
Period size: 864 Copynumber: 5.7 Consensus size: 885
37573 TTGATCTGAT
* ** * * *
37583 CTTAGACTGGGAATGAACTCC-TATGCCTAGGTCAACCCATTAAACGAGCATGTGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
37647 CGGCCAAAGGGGCAGGATGTGCAGGCCAAGGATCGGCTGGGTCCCCCTCAGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCAGGGATCGG-TGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** ** ** *
37712 TGCTGCCGGAACCCTCGGCCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTTGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
37777 CTGACAAAACGAGTGGGCAGACGGGC-GAGTACTACGTC-AGCCAGAGAGGCGGGATGCGCAAGC
195 CCGACGAAACGAGCGGGCTGGCGGGCAG-GCACTAC-TCGA-CCAGAGAGGCGGGATGCGCAAGT
* * **
37840 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGCGCCAATGCCAT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
37905 TTTTATGGCTTGTAAATT-ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCTA-ACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** ** *
37968 ACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGA-TTTGTTAAAATTTTTT
* * * *
38033 CAAAAGGAGTTTTGGCCCCAAACATGGTAGT-CGTGATCCTTGTATTTTTTTTTGGCATGCACAA
451 CAGAAGGAGTTTTGGCCCCAAACTTGGTA-TACATGATCCTTGTA-TTTTTGTTGGCATGCACAA
* *
38097 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
38162 TCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
38227 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
38292 ATCATGTGCGCACACCCCCCTTGCCCCCCAAATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT
708 ATCATGTGCGCACACCCCCC-CGCCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAAGTTCT
* * * * *
38357 CCGACGATGGTGCCCTGGGCGAA-AAAAATACGGCA-CAGCACATGACCAAGCCCAGCATGTCCA
772 CCGACGATGGTGCCCCGGGCAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCA
* *
38420 C-CTGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 CTC-GCAACCCTCGATCC-GTCCGATCTTAGACTGGGAATGAA-TCCGTATG
* *
38471 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
38536 CGACCAGAGGGGTAGGATGCGCAAG-CCGGGAATCGGTCGGGTCCCCCTCAGCGTGTTGCCAACC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCAGGG-ATCGGT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * ** * * *
38600 CAGCTGCTGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAATGAACTCTGTATGCCTAAGCTA
129 CTGCTACCGCAACCCTTGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * *
38665 GCCTATGAAACGAGCGGGAGGGCGGGCAGGTGGGCACTACGCCGTCCAGAGAGGCGGGATGCGCA
194 ACCGACGAAACGAGCGGGCTGGCGGGCA----GGCACTAC-TCGACCAGAGAGGCGGGATGCGCA
* *
38730 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCCATGCCAATGC
254 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
* *
38795 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
38860 ACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTC-GAGATTTTTTTAAAATT
384 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAG-GA-TTTGTTAAAATT
* * * * * * *
38924 TTTTCAGAAAGAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGAATGCAT
447 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTGTTGGCATGCAC
*** *
38989 AAAAAAATTCAGCTAAAAACTCGAAGTGTATTGGATTTTGTGGCCATTTGAAAAAAGTGTCCCCA
512 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
39054 TTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATGTCAAATGCTCTTTAAGAGGGTG
577 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
39119 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
642 TGAGTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * *
39184 ACATCATGTGCACACACCCCCCCGCCCCTCCAATTGCCGGAAACCCAATGCC-GCTAGTCAGGTT
706 ACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCATC-GGTCAAGTT
* * *
39248 CTCCGACGATGGTGCCCCGAGCGAA-AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
770 CTCCGACGATGGTGCCCCGGGCAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
*
39312 CAC-CTGTAA----C---CC-T-CGATC-----C---G---G--TCCG-AT-
835 CACTC-GCAACCCTCGATCCGTCCGATCTTAGACTGGGAATGAATCCGTATG
*
39339 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
39404 CGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCAGGTCCCCCTCAGTGTGCTACCAATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCAGGGATCGGT-GGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
39469 TGCTACCGCAACCCTTGATC-CGATCTC-ATCTTAAACTGGGAATGAACTCCGTATGCCTAAGTC
130 TGCTACCGCAACCCTTGATCTAG-TC-CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * ** * * *
39532 AACCGATGAAATGAGCAGGCGGGTGGGTGGGCACTATGTCGGCCAGAGAGGCGGGATGCGTAAGT
193 AACCGACGAAACGAGCGGGCTGGCGGGCAGGCACTA-CTCGACCAGAGAGGCGGGATGCGCAAGT
* *
39597 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAAGCCAT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
*
39662 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
39727 ACTCGTTTTCTATTTTTCACGATTTTGGAAAA-TTTTTACGGTTCAAGATTTTTTTTAATTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTT-CAAAACTTTTTACGGTTCAGGA-TTTGTTAAAATTTTT
*
39791 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
450 TCAGAAGGAGTTTTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
39856 ACAATTCAGCTAAAAACTCGTAGTGTACAGGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
39921 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
39986 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGCGCCAAGTACCAGCACCCATCACACT
645 GTTCTCGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
40051 TCATGTGCGCACACCCCCTCGGCCCCCCAATCACCGGAACCCCAATGCCATCGGTC-AGCTTCTC
709 TCATGTGCGCACACCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAAG-TTCTC
* * *
40115 TGACGATGCTCCGGCGATGCTGCCCCTGGCAAA-AAAAATGCGGCACCAGCACATGCCCGAGCCC
773 ---CGA--------CGATGGTGCCCCGGGCAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCC
* * * *
40179 AGCATGTGCAGTCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAGTGGACTCTGTATG
827 AGCATGTGCACTCGCAACCCTCGATCCG-TCCGATCTTAGACTGGGAAT-GAATCCGTATG
* * * *
40240 CTTAGACAGGGAATAAACTCCGCATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
40305 CGGCCAGAGGGTCAGGATGCGCAAGTTAGGGATTGGTTGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCAGGGATCGG-TGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * * ** *
40370 TACAACCATAATCTTTAGTTC-AGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTACCGCAACCCTT-GATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
40434 ACTGATGAAACTAGC--G--GGC--G--GGCACTACGTCGACCAGAGACGCGGGATGCGCAAGTC
194 ACCGACGAAACGAGCGGGCTGGCGGGCAGGCACTAC-TCGACCAGAGAGGCGGGATGCGCAAGTC
* * *
40491 ATGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
40556 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTA-ACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
40620 CTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-GAGATTT-TTGAAAAATTTTT
388 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAG-GATTTGTT--AAAATTTTT
* * *
40683 TCAGAAGGAGTTTTGGCCCGAAACATGGTAGT-CATGATCCTTGTATTTTTTTTGGCATGCACAA
450 TCAGAAGGAGTTTTGGCCCCAAACTTGGTA-TACATGATCCTTGTATTTTTGTTGGCATGCACAA
** * *
40747 AAAAATTCAGCTAAAAACTCGAAGTGTGTAGGATTTTGTGACCATTTGAGAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
40812 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
40877 AGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
40942 ATCATGTGCGCACACCCCCCCGCCCCTCCCAATCGCCGGAACCCCAATACCGTCGGTCAAGTTCT
708 ATCATGTGCGCACACCCCCCCGCCCC-CCCAATCGCCGGAACCCCAATGCCATCGGTCAAGTTCT
* * *
41007 CCGACGATGGTGCCCCGGGCAAAGAAAAATGCGGCACCAGCAGATGGCCAAGCCTAGCATGTGCA
772 CCGACGATGGTGCCCCGGGCAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCA
* * *
41072 CTCGCAACCCTTGATCCAGTCCGATCTTTGACTGGGAATGAATCCGTGTG
837 CTCGCAACCCTCGATCC-GTCCGATCTTAGACTGGGAATGAATCCGTATG
* * * * *
41122 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACAAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * *
41187 CGGCCAGAGGGGCAGGACACGCATGTCAGGGATCGGTGAGGTTCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGTCAGGGATCGGTG-GGTCCCCCTCTGCGTGCTGCCGATCC
* * ** *
41252 TGCTGCTGCAACCCTCCATCTAGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTTGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
41317 CTGACGAAACGAGCGGGCTGGCGGGCAGGCACTACACGGGCCAAAGAGGCAGGATGCGCAAGTTG
195 CCGACGAAACGAGCGGGCTGGCGGGCAGGCACTACTC-GACCAGAGAGGCGGGATGCGCAAGTCG
* *
41382 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGGCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
41447 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
41512 TCGTTTTCTATTTTTTACAATTTTCAAAACTTTTTGCTGTTCAGGATTTGTTAAAATATTTTCAG
389 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTGTTAAAATTTTTTCAG
* * * *
41577 AAGGAGTTTTGGCTCCAAACTTGGTATACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAT
454 AAGGAGTTTTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
41642 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
41707 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
41772 TCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATTGCACATCAT
649 TCGAGGTTTGATGAGG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
41837 GTGCGCACAGCCCCCGGCCCCCCCAATCGTCGGAACCCCAATG-CATTCGGTTAGGTTCTCTGAC
713 GTGCGCACACCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCA-TCGGTCAAGTTCTCCGAC
* * * *
41901 GACGGTGCCCCGGTG--AAGAAAAATGCCGCACCAACACATGCCCAAGCCCAGCATGTGCTGC-C
777 GATGGTGCCCCGG-GCAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGC-ACTC
*
41963 GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
840 GCAACCCTCGATCC-GTCCGATCTTAGACTGGGAATGAA-TCCGTATG
* * *
42011 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
42076 CGGCCAGAGGGGC-GCGATGCGCAAG-CCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGAT
66 CGGCCAGAGGGGCAG-GATGCGCAAGTCAG-GGATCGGT-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * ** *
42139 CTTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCC
128 CCTGCTACCGCAACCCTTGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
42204 AACCGACGAAACGAGCAAGCGTGCGGGTGGACGGGCGGGTAAGCACTACCCTGACTAGAGAGACG
193 AACCGACGAAACGAGC--G-G-GC---TGG-CGGGC----AGGCACTACTC-GACCAGAGAGGCG
* * * ** * * *
42269 GGATGCGCAAGCCGTGGATCGATACGATGGTAGGTGGGTTTATACACATCTACATATTTCT-ACG
245 GGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
42333 TGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACGTGAAGTTT
310 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
42398 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCTGTTCGGGATTTGT
375 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTGT
** * *
42463 TAAAATTTTTTCAGAAATAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTTTTGG
440 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTGTTGG
* * * *
42528 CGTGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAAAAGATTTTGTGACCAATTGAAAAAAGT
505 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
42593 GTCCTCATTTCGGACACTTTAATG
570 GTCCCCATTTCAGACACTTTAATG
42617 ACCATTTGAA
Statistics
Matches: 3631, Mismatches: 405, Indels: 208
0.86 0.10 0.05
Matches are distributed among these distances:
863 1 0.00
864 498 0.14
865 5 0.00
867 4 0.00
868 183 0.05
869 7 0.00
870 4 0.00
873 1 0.00
875 59 0.02
876 2 0.00
879 2 0.00
881 4 0.00
882 197 0.05
883 70 0.02
884 8 0.00
885 6 0.00
886 3 0.00
887 2 0.00
888 103 0.03
889 392 0.11
890 427 0.12
891 54 0.01
892 317 0.09
893 361 0.10
894 294 0.08
895 100 0.03
896 3 0.00
897 8 0.00
899 4 0.00
900 266 0.07
901 241 0.07
902 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (885 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGTCAGGGATCGGTGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTACCGCAACCCTTGATCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCTGGCGGGCAGGCACTACTCGACCAGAGAGGCGGGATGCGCAAGTCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTGTTAAAATTTTTTCAGAA
GGAGTTTTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGCCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAAGTTCTCCGACGATG
GTGCCCCGGGCAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACTCGCAACC
CTCGATCCGTCCGATCTTAGACTGGGAATGAATCCGTATG
Found at i:42014 original size:26 final size:26
Alignment explanation
Indices: 41985--42037 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
41975 CCGGTCTGAT
41985 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
42011 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
42037 C
1 C
42038 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:44323 original size:877 final size:869
Alignment explanation
Indices: 42626--45400 Score: 3852
Period size: 877 Copynumber: 3.2 Consensus size: 869
42616 GACCATTTGA
* * **
42626 AAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCACACCCCCCCGACCCCCCTGATCACC
1 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCAATCACC
* * ** * * *
42691 GAAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCTGGTGAAGAAA
65 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCAGGTGAAGAAA
* * * * ** **
42756 AATACGGCAACAACACATGCCTGAGCCCAGTATGTGTTGTCACAACCCTCGGTCCGGTCCGATCT
130 AATACGACACCAACACATGCC-GAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGT-CGATCT
* * * *
42821 TAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGTTCAGTCG
193 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCG
* ** *
42886 GCCAGAGGGGCGGGATTGCCCAAGTCGGGGATCGACTGGGTCCCTTTCTACGTACTGTCGATCTT
258 GCCAGAGGGGCGGGA-TGCACAAGTCGGGGATCGAC-GGGTCCCCCTCTACGTACTGTCGATCCT
* * * *
42951 GCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTCGAATGAACTCCATATGCCTAAGCCAA-A
321 GCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACA
* * *
43015 TGACAAAACGAGCGGGCGGGTGG-G-CGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCC
385 -GACGAAACGAGCGGGCGGGCGGCGAGGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCC
43078 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
449 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
43143 TTATTACTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
514 TTATTACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGAC
* *
43208 TCGTTTTCTGTTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGAATTTTTGAAAATTTTTTTG
579 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-AATTTTTGAAAATTTTTTCG
* * *
43272 AAAGGAGTTTTAGCCGCAAACCTGTTAGACGTGATCCTCATATTTTTGTTGGCATGCACAAAAAA
643 GAAGGAGTTTTAGCC-CAAACTTGTTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAA
43337 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
707 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
43402 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGCT
772 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
43467 CTCGAGGTTTGATAAGGGATAGGGGGCCAATAT
837 CTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
** * * * * *
43500 AAGGGTTAAGTACCAGCATCCATAGCACATCATGTGCGTACACCCCGCCGGCCCCCCCGATCGCC
1 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCAATCACC
*
43565 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTG-CCACGGTGAAGAA
65 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCA-GGTGAAGAA
* * *
43629 AAATACAACACCAACACATGTCCGAGCCCAGCATGTGCTACCGTAACCCTTGGTCTGGTCGAATC
129 AAATACGACACCAACACATG-CCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCG-ATC
43694 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG-C
192 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC
* * * * *
43758 TAGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGATCGGTTCCCCGTCTACGTGCTGTCGATCC
257 -GGCCAGAGGGGCGGGATGCACAAGTCGGGGATCGA-CGGGTCCCCCTCTACGTACTGTCGATCC
** * *
43823 TATTGCCGTAACCCTCGGTCTGGTCCGATCTTAGGCTGGTAATGAACTCCGTATGCCTAAGCCAA
320 TGCTGCCGCAACCCTCGGTC-GGTCCGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAA
*
43888 CAGACGAAATGAGCGGGCGGGCAGGCGAGTGGGCACTACGCCGGCCAAAGAGACGGGATGCACAA
383 CAGACGAAACGAGCGGGCGGGC-GGCGAG-GGGCACTACGCCGGCCAAAGAGACGGGATGCACAA
43953 GCCGTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
446 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
44017 TTTTTATTACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
511 TTTTTATTACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
44082 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAAATTTTTGAAAATTTTTT
576 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAAATTTTTGAAAATTTTTT
44147 CGGAAGGAGTTTTAGCCACAAACTTGTTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAA
641 CGGAAGGAGTTTTAGCC-CAAACTTGTTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAA
44212 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
705 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* **
44277 AGACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGATTGTGAG
770 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
44342 TTCTCGAGGTTTGATGAGGGATAGGGTGCCAATAT
835 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * **
44377 AAGGCCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCGG-CCCCCCAATCGTCG
1 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACCG
* * * *
44441 GAACCCCAATGCCGTCGGTCAGGTTCTCC-GTCGATACTCCGACGATGGTGGCCCAGGCGAAAAA
66 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGT-GATGCTCCGACGATGGT-GCCCAGGTGAAGAA
* * * *
44505 AAATGCGACACCAGCAAATGCTCGAGCCCAGCATGTGC-ACCCGTAACCCTCGGTCCGATTCGAT
129 AAATACGACACCAACACATGC-CGAGCCCAGCATGTGCTA-CCGTAACCCTCGGTCCG-GTCGAT
* *
44569 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGT
191 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGT
** * * * * *
44634 CGGCCAGAGGGGTAGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGCGTTCTG-CTAATC
256 CGGCCAGAGGGGCGGGATGCACAAGTCGGGGATC-GACGGGTCCCCCTCTACGTACTGTC-GATC
* * *
44698 CTGCTGCCGCAACCCTCGGTGCGATCCGATCTCAGATTGGGAATGAACTCCGTATGCCTAAGCCA
319 CTGCTGCCGCAACCCTCGGT-CGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * * **
44763 ACCGACGAAACGAGCGGGCGGGCGGAC-A--GGCATTACGCCGGCCAGAGAGACGGGATGCGTAA
382 ACAGACGAAACGAGCGGGCGGGCGG-CGAGGGGCACTACGCCGGCCAAAGAGACGGGATGCACAA
*
44825 GCCGGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCGTGCCAATGCC
446 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CGTGCCAATGCC
** ** *
44890 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGA
510 ATTTTTATTACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* * ** * * * * *
44955 CTACTCGTTTTTTACATTTCATGATTTTCGAAACTTTTTATGGTTCAGGATTTTTTTAAAATTTT
575 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAAATTTTTGAAAATTTT
* * * ** *
45020 GTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGATTTGATCCTTGTATTTTTGTTGGCATGCACAA
639 TTCGGAAGGAGTTTTAGCCC-AAACTTGTTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAA
* * * *
45085 AAACATTCAGCTAAAAACTCAAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
703 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
45150 TCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTCAGGGGGTGTG
768 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
45215 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCGAATAT
833 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
45252 AAGGGCCAAGTACCAGCACCCATCGAACATCATGTGTGCACACCCCCC-GACCCCTCAATCACCG
1 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACCG
* * * * * * * *
45316 GAACCCTAATGCCGTCGATCAGGTTCTTCGGTGATGCTCCGACGATGGGGCCCCGGGCGAAAAAA
66 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG-CCCAGGTGAAGAAA
* * *
45381 AATGCGGCACCAGCACATGC
130 AATACGACACCAACACATGC
45401 TCGGGCTGGC
Statistics
Matches: 1709, Mismatches: 159, Indels: 65
0.88 0.08 0.03
Matches are distributed among these distances:
872 58 0.03
873 101 0.06
874 387 0.23
875 419 0.25
876 249 0.15
877 431 0.25
878 64 0.04
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (869 bp):
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACCG
GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCAGGTGAAGAAAA
ATACGACACCAACACATGCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCC
AGAGGGGCGGGATGCACAAGTCGGGGATCGACGGGTCCCCCTCTACGTACTGTCGATCCTGCTGC
CGCAACCCTCGGTCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACAGACGAA
ACGAGCGGGCGGGCGGCGAGGGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATTAC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAAATTTTTGAAAATTTTTTCGGAAGGAGT
TTTAGCCCAAACTTGTTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATAT
Found at i:46104 original size:26 final size:26
Alignment explanation
Indices: 46054--46106 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
46044 CTGGTCCGAT
**
46054 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
46080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
46106 C
1 C
46107 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:47544 original size:874 final size:880
Alignment explanation
Indices: 45425--47731 Score: 3308
Period size: 890 Copynumber: 2.6 Consensus size: 880
45415 ACTACATCGA
* *
45425 CCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTA
1 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
45490 TCTTTTTGCCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 TATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * * * *
45555 GTGTGAAGTTTCATGGCAAGGCGACTCGTTCTCTATTTTTTAGGCTTTTCGAAACTTTTTACGAT
131 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGT
* * * *
45620 TTAAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTG
196 TCAGGATTTTTTTAAAATTTTTTTAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * ** *
45685 AATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGGCGAAGTGTACAGGATTTTGTGACCA
261 TATTTTTGTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGAATTTTGTGACCA
*
45750 TTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
326 TTTGAAAAA-GTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
45815 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * * *
45880 AAGTG-CCAGCACCCGTCGTACATCATGTGCGCACACCCTCCGGCCCCACTATCGTCGGAACCCC
455 AAG-GACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCC
* * ** * * *
45944 AATGCCGTCGATCAGGTTCTCTGGTGATGGTGCCCTGTGCAAAAAAAAATGTGGCACCAGCACAT
519 AATGCCGTCGGTCAGGTTCTCCGGCAATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACAT
* * *
46009 GCCCGAGCCAAGCATTTACACCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTT
584 GCCCGAGCCAAGCATGTACACCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTT
** * * *
46074 TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACAAGCGTACGGGCT
649 CATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTACGGGCG
** * *
46139 CTTAGCTGGCCAGAGGGGCAGCATGCGCAAACCGGGGATCGATCGGGTCCCCCTCAGCGTGCTAT
714 CTTAGCCAGCCAGAGGGGCAGCATGCGCAAACCGAGGATCGATCAGGT----CT-AGCGTG--AT
* * * *
46204 CGATCCTGCTGTTGCAACCCTCATTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
772 CGATCCTGCTGCTGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
** * *
46269 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGAGCACTATGCCGG
837 AGCCAACCGACGAAACGAGCGAACGGGC--GAGAGCACTACGCCGG
*
46315 CCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
46380 TATTTTTACCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTCAGCCTTC
66 TATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
46445 ATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGT
131 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGT
* * * *
46510 TCGGGATTTTTTAAAAATTTTTTTAGAAGGGGTTTTGGCACCAAACTTAGTAGACGTGATCCTTG
196 TCAGGATTTTTTTAAAATTTTTTTAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
46575 TATTTTTGTTGGT-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA-AGATTTTGTAAC
261 TATTTTTGTT-GTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGA-ATTTTGTGAC
*
46638 CATTTGAAAAAAGTGTCCCCACTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
324 CATTTG-AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * * **
46703 CAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTCATGAGGGATAGAGGGTGAATATAAGGG
388 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
46768 CCAAGGACCAGCACCCATTGCACATCATGTGCGCACACCCGCCGCCCCCCCAATCGCCGGAACCC
453 CCAAGGACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCC
* *
46833 CAATGCC-ACTGGTCAGGTTCTCCGGCAATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCAC
518 CAATGCCGTC-GGTCAGGTTCTCCGGCAATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCAC
* * *
46897 ATGCCCGAGCCTAGCATGTGCACCTGCAACCCTC-AGTCCGGTCCAATCTTAGACTGGGAATGAA
582 ATGCCCGAGCCAAGCATGTACACCCGCAACCCTCGA-TCCGGTCCAATCTTAGACTGGGAATGAA
* * * * *
46961 CTTCATATGCTTAGACAGGGAATGAACTCTGTATGCCTAAGTCGACCCACAAAACGAGCGTGCGG
646 CTTCATATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTACGG
* *
47026 GCGCTTAGCCAGCTAGAGGGGCATG-ATGCGCAAGCCGAGGATCGAT-AGGT-T-GC-TG-TCGA
711 GCGCTTAGCCAGCCAGAGGGGCA-GCATGCGCAAACCGAGGATCGATCAGGTCTAGCGTGATCGA
* * *
47085 TCCTGCTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAGCTGCGTATGCCTAAGC
775 TCCTGCTGCTGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
47150 CAACCGACGAAACGAGCGAACGGGC-AG-GCACTGCGCCGG
840 CAACCGACGAAACGAGCGAACGGGCGAGAGCACTACGCCGG
47189 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
1 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
47254 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTC
66 TATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
47319 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGT
131 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGT
* * *
47384 TCAGGATTTTTTTAAAATTTTTTCAGATGGGGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
196 TCAGGATTTTTTTAAAATTTTTTTAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * *
47449 TATTTTTGTTATCATGCACAAAAAAAGTCAGGTAAAAACTCGTAGTGCACAGAATTTTGTGACCA
261 TATTTTTGTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGAATTTTGTGACCA
** * *
47514 TTTGACAAAAGTGTCCCCATTTTTGACACTTTAATGGCTACTGACAGCAAACTTGTAAAATCTCA
326 TTTGA-AAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * *
47579 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATCGGGGGCCAATATGAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
47644 AAGTAGCAGCACCCACTGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCTA
455 AAGGACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCA
*
47709 ATACCGTCGGTCAGGTTCTCCGG
520 ATGCCGTCGGTCAGGTTCTCCGG
47732 TGATGCTCCA
Statistics
Matches: 1269, Mismatches: 137, Indels: 38
0.88 0.09 0.03
Matches are distributed among these distances:
873 2 0.00
874 500 0.39
875 3 0.00
878 85 0.07
881 2 0.00
882 2 0.00
884 1 0.00
889 6 0.00
890 661 0.52
891 7 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (880 bp):
CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
TATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGT
TCAGGATTTTTTTAAAATTTTTTTAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGAATTTTGTGACCA
TTTGAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGGACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAA
TGCCGTCGGTCAGGTTCTCCGGCAATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGC
CCGAGCCAAGCATGTACACCCGCAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTTCA
TATGCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTACGGGCGCT
TAGCCAGCCAGAGGGGCAGCATGCGCAAACCGAGGATCGATCAGGTCTAGCGTGATCGATCCTGC
TGCTGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGAACGGGCGAGAGCACTACGCCGG
Found at i:48457 original size:26 final size:26
Alignment explanation
Indices: 48421--48473 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
48411 TTTGACTTAG
* *
48421 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
48447 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
48473 G
1 G
48474 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.