Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167958.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 49044
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Found at i:1791 original size:12 final size:12
Alignment explanation
Indices: 1774--1801 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
1764 CCGGCGTAGT
1774 GCCCACCCGCCC
1 GCCCACCCGCCC
1786 GCCCACCCGCCC
1 GCCCACCCGCCC
1798 GCCC
1 GCCC
1802 GCTCGTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.75, G:0.18, T:0.00
Consensus pattern (12 bp):
GCCCACCCGCCC
Found at i:3771 original size:26 final size:26
Alignment explanation
Indices: 3734--3786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3724 GTTGACTTAC
*
3734 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3760 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3786 G
1 G
3787 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:4683 original size:26 final size:26
Alignment explanation
Indices: 4631--4683 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
4621 GTTGACTTAG
* *
4631 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
* *
4657 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGCTCATTCCCAATCTAA
4683 G
1 G
4684 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Found at i:5553 original size:26 final size:26
Alignment explanation
Indices: 5523--5573 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
5513 TGACTTAGGG
*
5523 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCACAGTCTAAGC
*
5549 ATACGGAGTTCATTCACAGTCTAAG
1 ATACGAAGTTCATTCACAGTCTAAG
5574 ATCGACCAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCACAGTCTAAGC
Found at i:6445 original size:26 final size:26
Alignment explanation
Indices: 6416--6467 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
6406 GTTGACTTAG
*
6416 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
*
6442 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
6468 AATCGGACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:7337 original size:26 final size:26
Alignment explanation
Indices: 7301--7353 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
7291 GTCGGCTTAG
*
7301 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
7327 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
7353 G
1 G
7354 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:7834 original size:894 final size:892
Alignment explanation
Indices: 2873--10159 Score: 9573
Period size: 885 Copynumber: 8.1 Consensus size: 892
2863 GTTGACTTAG
* *
2873 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * *
2938 CTCGGGCATGTGGTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-CTAGAG
66 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * *
3002 AACCTGACCGGCGGCATTGGGGTTCTGACGATC-GGGGGGCGAGGGGTGTGCGCACAGGATGTGC
129 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
3066 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTAT-CCTCATCAAACCTCCAA-AACTCAC
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGAACTCAC
* * *
3128 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGTCTTAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
3193 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
3258 TGCATGCCAGAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * * *
3323 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAGCGAGTCGTCTT
452 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
3388 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
3453 TTGGCACATAAAAATATGAAGAGGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCG
582 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
3518 CATCCCGTCTCTCTTGGCCGGCATAGT----GCCCGCCCGCTCGTTTCGTCGGTTGACTTAGGCA
647 CATCCCGTCTCTC-TGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCA
** * *
3579 TACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTTGTGGCAGCAAGATGGGCAGC
711 TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGC
* * * * * *
3643 ACGCAAAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCGCCCCTTTGG-TGACTGAGCGCCC
775 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
3707 GCACGTTCATTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAA
840 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
3760 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * * * *
3825 CTCCGGCATCTGCTGGAGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATCGTAGA
66 CT-CGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
3890 ACCTGACCGGCGGCATTGCGGTTCCGACGATCCGGGGGGGTCGGGGGGTGTGCACACATGATGTG
130 ACCTGACC-GCGGCATTGGGGTTCCGACGAT-CGGGGGGG-CGGGGGGTGTGCGCACATGATGTG
* *
3955 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCACTCATCAAACCTCAAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * * *
4020 TCCCCCTAAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
4085 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
4149 TGCAAGCGAACAAAAATAC-AGGATCACGTCT-CCAGGTTTGGGGCC-AAAATCCTTCC-AAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
*
4210 ATTTTAAAAAATCCCGAAACCTCAAAAAGTTTCGAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 ATTTTAAAAAATCCC-AAACCGCAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTC
4275 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
4340 CATTGGCCTGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
4405 CGCATCCCGTCTCTCTGGCCCG-CGTAGTGCCCGCCCGCCCGTCCAC-TCGTTCGTCGGTTGGCT
645 CGCATCCCGTCTCTCTGG-CCGACGTAGTGCCCGCCCGCCCG-CC-CGT--TTCGTCGGTTGGCT
* **
4468 TAGGCATACGGAGTTCAATCCCAGTCTAAGATCAGATCC-GTACTGAGGGTTGTGGCAGCAGGAT
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAG-ACTGAGGGTTACGGCAGCAGGAT
* * * * * **
4532 CGGTAGCATGTAGAGAGGGACCCGACCGATCCCCGGCTTGCGCATCCCGTCTTTCTGGCCGGCTG
768 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
4597 AGTGCCCGCACGCTCATTCCGTGGGTTGACTTAGGCATATGGAGCTCATTCCCAGTCTAA
833 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
4657 GCATACGGAGTTCATTCCCAATTTAAGATCGGACCAGACCGAGGGTTTCTG-TAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG-TTGTGACAGCACATGCTGG
4721 GCTCGGGCATGTGCTGGTGCCGCA--TTT-TTC-T----------TCGTCGGAGCATCGTCGGAG
65 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
4772 AACCTGACCGAAGGCATTGGGGTTCCGGCGATCGGGGAGGCCGGGGGGCAGTGTGCGCACATCAT
129 AACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGG-GGGC-GGGGG--GTGTGCGCACATGAT
*
4837 GTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
189 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * * *
4902 CAAACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTTTGA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
4967 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
** * * * * *
5032 TTGTGCATGCCACGAAAAATAAAAGGATCACATCTGCCAAGTTTGGGACCAAAACTCCTTCCAAA
384 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* *
5097 AAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCCAAAATC-TAGAAAAATAGAAAACGAGTCG
449 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCAT-GAAAAATAGAAAACGAGTCG
* *
5161 TCTTGCAATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
**
5226 GGCATTGGCATGCAAAAATACAAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCT
578 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
5290 TGCGCATCCCGTCTCTTTGGTCGGTGTAGTGCCCGCCCGCCTGCCCGCCCGCTCGTTTCGTCTGT
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCG--C-C-CGTTTCGTCGGT
* * * * *
5355 TGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAAACCAGA-TCGAGGGTTGCAGCAGCA
700 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTACGGCAGCA
* * * *
5419 GGATCGACAGCACGCAGAGTGGGACCTGACCGATCCCCGGCTT-CGTATCCCGCCCCTCTGGCCG
764 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
5483 GCTGAGAGCCCGTACGCTCGTTTCATGGGTTGACTTAGGGATACGAAGTTCATTCCCAGTCTAA
829 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
5547 GCATACGGAGTTCATTCACAGTCTAAGATC-GACCAGACCAAGGGTTGCGGCAGCATATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * * * *
5611 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGAACCATTGCCAGAGCATCATCGGAGA
66 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
5676 ACCTGATCGACGGCATTGTGGTTCCAACGATTGGGGGGCGGGGGGGCGGTGTGCGCACATGATGT
130 ACCTGACCG-CGGCATTGGGGTTCCGACGA-TCGGGGG-GGCGGGG-GGTGTGCGCACATGATGT
* * * * * *
5741 GCGATGGGTGCTGGTACTTGACCCCTATGTTGGCCCCCTATGCCTCATCAAACCTCGAGAAGTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
5806 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
5871 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
5936 GTGCATGCCAGAAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAA
* * * * * *
6001 AATTTTAAAAAATCTCGAACCGTAAATAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCGTCT
451 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
6066 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
6131 ATTGGCATGCAAAAATATGAAGAAATGCCTTAACCCATCTACCACCCTATCGATCCACGGCTTGC
581 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * ***
6196 GCATCCCGTCTCTCTGGCCAACATAGTGCCCGACCGTCCATTCGTTTCGTCGGTTGGCTTAGGCA
646 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCA
* **
6261 TACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGATAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCA
* ** * * * *
6325 CGCAGAGGGGGAACCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAACGCCTG
776 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
6390 CATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
6442 GCATAAGGAGTTCATTCCTAGTCTAAAATCGGACCCGACCGAGGGTT-ACAGCAGCACATGCTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGA-CAGCACATGCTGG
* * * * * * * *
6506 GCTCGAGCATGTGCTGGTGTCGTATTTTTCTTTGCCAGGGCACCATCGCCAGAGCATCGCCGGAG
65 GCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
6571 AACCTGACCGGTGGCATTGGGGTTCCGGCGAT--------CGGGGGGTGTGCGCACATGATGTGC
129 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* *
6628 GATGGGAGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
6693 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
6758 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
6823 GCATGCCAAAAAAAATACAAGTATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAGAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
*
6888 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
6953 CCATGAAACTTTACGTGGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
7018 TTGCATGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGCTTGCGC
583 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * *
7083 ATCCAGTCTCTCTGGCCGGGGTAGTGCCCGCCTGCCCGCCCGTTTTGTCGGTTGGCTAAGGCATA
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATA
* ** ** * * * **
7148 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGCATT-TTGTAGTAGGATTGATAGCACG
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACG
* * * * * *
7212 CAGAGGGGGACCCGACCGATGCCTGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGTGCTCGAA
778 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
7277 CGCTCATTTCGTGGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
7327 GCATACCGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGGGGGTTGTGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
*
7392 CTCTGGCATGTGCTGGTGCCGCCTTTTTCTTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTC-GGCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *** * *
7457 AACTTGACCAGCGATGTTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATTATGTGT
129 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
* * *
7522 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCGTATCCCTCAGCAAACCTTC-AGAACTCAC
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTCAC
* *
7586 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
7651 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGACTTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
7716 TGCATGCCAAAAAAAATATAAGGATCATGTCTACTAAGTTTGGGGCTAAAAATCCTTCCAAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
* * * *
7781 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
452 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
7846 GCAATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
7911 TTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCAGGGCTTGCG
582 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
7975 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCTCATTTCGTCGGTTGGCTGAGGCA
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC-CGTTTCGTCGGTTGGCTTAGGCA
** * ** * * * *
8039 TACGGAGTTCATTCCCAAACTGAGATCAGACGGGACTGAGGGTTACAGCAGTAGGATTGGTAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCA
* * * * ** *
8104 CGCAGAGGGGGAACTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTTGGCAGAGCGCCCG
776 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
8169 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
8221 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* ** * * *
8286 CTCGTGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGTACCATCGTCGGAGCTTCGCCCGGAG
66 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG-TCGGAG
* *
8351 AACCTGACCGACGGCATTGGGGTTCC-AGCGATCGAGGGGGCCGGGGGGTTGTGTGCGTACATGA
129 AACCTGACCG-CGGCATTGGGGTTCCGA-CGATCG-GGGGGGC-GGGGG--GTGTGCGCACATGA
* * * *
8415 TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTAAGCAC
188 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * * *
8480 TAACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTTAAAGTGTCTG
253 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
8545 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
318 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
8610 TTTGTACATACCAAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CA
383 TTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
* *
8674 GAAAAAA-TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGT
447 -AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
8738 CGTCTTGTCATGAAACTTCACGTGAATGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAA
511 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
8803 ATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCGATCCACGG
576 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
8868 CTTGCACATCCCGTCTCCCAGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTG
641 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG--C-C-CGTTTCGTCGGTTG
* * * * * * *
8933 GCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTTA-ATCGGATTGAGGGTTATGGTAGCAGG
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACTGAGGGTTACGGCAGCAGG
** * * * * *
8997 ATCGGCAGCACATAGAGGGGGACTC-AGCCGATCCTCAGCTTGCGCATCCCACCCCTCTGGCCGA
766 ATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
9061 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * **
9124 GCGTATGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGCAGCACATGCTATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
* * * **
9189 CTTGGGCATGTACTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 C-TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* **
9254 ACCTGACCGACGACATTAAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
* * **
9319 AATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
9384 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
9449 GGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
9514 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCTGAAAAAA
388 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
* ** ** *
9579 TTCTAAAAAATCCTGAACCGCAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
9644 CCATGAAAC-TCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCAATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
9708 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATTCACGGCTTGTGC
583 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** **
9773 ATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCACCCGCTCGTTTTATCAATTGGCT
648 ATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG----CCCGCCCGCCCGTTTCGTCGGTTGGCT
* * * * * * * *
9838 TCGGCATACAGAGTTCATTCCTAGTCTAAAATCGGACCAGACCGAGGGTTACGGTAGCATGATCG
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCG
* * * * * ** * *
9903 GCAGCACGCAGAGGGGGACTCGGCTGATCCCCAGCTTGTGCATCCTACCCCTCTGGTCGACTGAG
770 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
9968 TGCCCGTATGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * ** *
10026 GCATACGGAGTAAATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT-ACAGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGA-CAGCACATGCTGG
* * * *
10090 GATCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGAAG
65 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
10155 AACCT
129 AACCT
10160 ATCCGGTAGT
Statistics
Matches: 5619, Mismatches: 659, Indels: 229
0.86 0.10 0.04
Matches are distributed among these distances:
882 7 0.00
883 52 0.01
885 824 0.15
886 166 0.03
887 220 0.04
888 182 0.03
889 258 0.05
890 185 0.03
891 148 0.03
892 138 0.02
893 143 0.03
894 729 0.13
895 194 0.03
896 180 0.03
897 133 0.02
898 544 0.10
899 375 0.07
900 3 0.00
901 12 0.00
902 738 0.13
903 369 0.07
904 12 0.00
906 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGG
CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTT
TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGCAGCAGGATCGGCAGCACGCAG
AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:8231 original size:26 final size:26
Alignment explanation
Indices: 8195--8247 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
8185 GTTGACTTAG
8195 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8221 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
8247 G
1 G
8248 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:10030 original size:26 final size:26
Alignment explanation
Indices: 10000--10052 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9990 GTTGACTTAG
**
10000 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTAAATTCCCAGTCTAA
10026 GCATACGGAGTAAATTCCCAGTCTAA
1 GCATACGGAGTAAATTCCCAGTCTAA
10052 G
1 G
10053 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTAAATTCCCAGTCTAA
Found at i:10736 original size:59 final size:58
Alignment explanation
Indices: 10647--10821 Score: 226
Period size: 58 Copynumber: 2.9 Consensus size: 58
10637 TTGTGTAGAG
10647 AAAATTGATACTTTCAACTTTTCCCCAAAAATACTTTTTTTGGAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATACTTTTTTTGGAAATTTATTTTTAAGA
* * * ** *
10706 AAAATTGATACTTTCATCTTTTCCTCAAAAA-CCCTTTTTTCAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATACTTTTTTTGGAAATTTATTTTTAAGA
**
10764 AAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTTGGAAATTTTGATTTTTA
1 AAAATTGATACTTTCAACTTTTCCC-AAAAATACTTTTTTTGGAAA-TTT-ATTTTTA
10822 TTTAAAGAAA
Statistics
Matches: 99, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
57 1 0.01
58 52 0.53
59 36 0.36
60 3 0.03
61 7 0.07
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATACTTTTTTTGGAAATTTATTTTTAAGA
Found at i:10848 original size:14 final size:14
Alignment explanation
Indices: 10829--10858 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10819 TTATTTAAAG
*
10829 AAAATAGAATAATA
1 AAAATAGAAAAATA
10843 AAAATAGAAAAATA
1 AAAATAGAAAAATA
10857 AA
1 AA
10859 GAAAAGTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (14 bp):
AAAATAGAAAAATA
Found at i:10863 original size:17 final size:17
Alignment explanation
Indices: 10824--10863 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 17
10814 GATTTTTATT
*
10824 TAAAGAAAATAGAATAA
1 TAAAGAAAATAGAAAAA
10841 T--A-AAAATAGAAAAA
1 TAAAGAAAATAGAAAAA
10855 TAAAGAAAA
1 TAAAGAAAA
10864 GTAAAACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 6
0.73 0.04 0.23
Matches are distributed among these distances:
14 12 0.63
15 1 0.05
16 1 0.05
17 5 0.26
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (17 bp):
TAAAGAAAATAGAAAAA
Found at i:11364 original size:11 final size:11
Alignment explanation
Indices: 11348--11386 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
11338 TCTGGGTTTT
11348 TTCACCGGAAG
1 TTCACCGGAAG
11359 TTCACCGGAAG
1 TTCACCGGAAG
**
11370 TTCGTCGGAAG
1 TTCACCGGAAG
*
11381 GTCACC
1 TTCACC
11387 AGTTTCTGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (11 bp):
TTCACCGGAAG
Found at i:11987 original size:10 final size:10
Alignment explanation
Indices: 11961--12092 Score: 65
Period size: 10 Copynumber: 12.5 Consensus size: 10
11951 TTACAAGAAA
*
11961 AATAATAAAA
1 AATAATAAAT
11971 AATAAT-AAT
1 AATAATAAAT
11980 AATAAATAAAT
1 AAT-AATAAAT
* *
11991 TATAATATAT
1 AATAATAAAT
* *
12001 AATAAATATAG
1 AAT-AATAAAT
12012 AACTATATAAAT
1 AA-TA-ATAAAT
12024 AA-AATACATAT
1 AATAATA-A-AT
* *
12035 AAATATTAACAA
1 -AATAATAA-AT
*
12047 AAAAATAAAT
1 AATAATAAAT
12057 AAGTAA-AAAT
1 AA-TAATAAAT
12067 -ATACATATAAT
1 AATA-ATA-AAT
12078 AATAATAAAT
1 AATAATAAAT
12088 AATAA
1 AATAA
12093 AATACATAAA
Statistics
Matches: 94, Mismatches: 14, Indels: 28
0.69 0.10 0.21
Matches are distributed among these distances:
8 2 0.02
9 10 0.11
10 35 0.37
11 30 0.32
12 14 0.15
13 3 0.03
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.29
Consensus pattern (10 bp):
AATAATAAAT
Found at i:12087 original size:21 final size:21
Alignment explanation
Indices: 11972--12088 Score: 74
Period size: 21 Copynumber: 5.8 Consensus size: 21
11962 ATAATAAAAA
11972 ATAATAATAATAAATA-A-ATT
1 ATAATAATAATAAATATACA-T
*
11992 ATAATATATAATAAATATAGA-
1 ATAATA-ATAATAAATATACAT
12013 ACT-AT-ATAAATAAA-ATACAT
1 A-TAATAAT-AATAAATATACAT
* * *
12033 ATAAATATTAACAAA-A-AAAT
1 AT-AATAATAATAAATATACAT
12053 A-AATAAGTAA-AAATATACAT
1 ATAATAA-TAATAAATATACAT
12073 ATAATAATAATAAATA
1 ATAATAATAATAAATA
12089 ATAAAATACA
Statistics
Matches: 77, Mismatches: 6, Indels: 27
0.70 0.05 0.25
Matches are distributed among these distances:
18 7 0.09
19 11 0.14
20 24 0.31
21 31 0.40
22 3 0.04
23 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (21 bp):
ATAATAATAATAAATATACAT
Found at i:12097 original size:27 final size:27
Alignment explanation
Indices: 11959--12105 Score: 79
Period size: 27 Copynumber: 5.2 Consensus size: 27
11949 TATTACAAGA
* * *
11959 AAAATAATAAAAAATAATAATAATAAAT
1 AAAATAATAATAAATAAAAAT-ATACAT
* *
11987 AAATTATAAT-ATATAATAAATATAGAACTAT
1 AAA--ATAATAATA-AATAAAAATA-TAC-AT
* *
12018 ATAAATAA-AATACATATAAATATTAACA-
1 A-AAATAATAATAAATAAAAATA-T-ACAT
*
12046 AAAA-AATAAATAAGTAAAAATATACAT
1 AAAATAAT-AATAAATAAAAATATACAT
*
12073 ATAATAATAATAAATAATAAA-ATACAT
1 AAAATAATAATAAATAA-AAATATACAT
12100 AAAATA
1 AAAATA
12106 CAAAAGAAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 27
0.68 0.12 0.20
Matches are distributed among these distances:
26 5 0.06
27 26 0.29
28 21 0.23
29 11 0.12
30 22 0.24
31 3 0.03
32 2 0.02
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.28
Consensus pattern (27 bp):
AAAATAATAATAAATAAAAATATACAT
Found at i:12194 original size:20 final size:21
Alignment explanation
Indices: 12169--12209 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
12159 GGGCTTACCC
12169 ATTTGGGCCAGG-CCCAATTG
1 ATTTGGGCCAGGACCCAATTG
12189 ATTTGGGCCAGGACCCAATTG
1 ATTTGGGCCAGGACCCAATTG
12210 GGTGTCTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.24
Consensus pattern (21 bp):
ATTTGGGCCAGGACCCAATTG
Found at i:12316 original size:7 final size:7
Alignment explanation
Indices: 12311--12353 Score: 63
Period size: 7 Copynumber: 6.3 Consensus size: 7
12301 TCATTTTTTG
12311 TTTT-TT
1 TTTTGTT
12317 TTTTGTT
1 TTTTGTT
12324 TTTTGTT
1 TTTTGTT
12331 TTTTGTT
1 TTTTGTT
12338 TTTTGGTT
1 TTTT-GTT
12346 TTTT-TT
1 TTTTGTT
12352 TT
1 TT
12354 ACCAAAGCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
6 8 0.23
7 20 0.57
8 7 0.20
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTGTT
Found at i:12327 original size:18 final size:19
Alignment explanation
Indices: 12304--12339 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
12294 AACATTGTCA
12304 TTTTTTGTTTTTT-TTTTG
1 TTTTTTGTTTTTTGTTTTG
12322 TTTTTTGTTTTTTGTTTT
1 TTTTTTGTTTTTTGTTTT
12340 TTGGTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (19 bp):
TTTTTTGTTTTTTGTTTTG
Found at i:12350 original size:25 final size:25
Alignment explanation
Indices: 12304--12353 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
12294 AACATTGTCA
*
12304 TTTTTTGTTTTTTTTTTGTTTTTTG
1 TTTTTTGTTTTTTGTTTGTTTTTTG
*
12329 TTTTTTGTTTTTTGGTTTTTTTTTT
1 TTTTTTGTTTTTT-GTTTGTTTTTT
12354 ACCAAAGCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (25 bp):
TTTTTTGTTTTTTGTTTGTTTTTTG
Found at i:12497 original size:42 final size:42
Alignment explanation
Indices: 12360--12738 Score: 576
Period size: 41 Copynumber: 9.1 Consensus size: 42
12350 TTTTACCAAA
* *
12360 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-ATAAATT
12403 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
* *
12444 GCTCTTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
12486 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
*
12527 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAATAAATT
12569 GCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
* * *
12610 TCTCCTCTAAACAGAGGCACCACAACTTTGAGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
12652 GCT-CTCT-AACAGAGGCACCACGACTTTG-GAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
* * *
12691 ACTCCTCTAAACAGAGGTACCACGACTTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAATAAATT
12733 GCTCCT
1 GCTCCT
12739 TGACAATCAT
Statistics
Matches: 310, Mismatches: 18, Indels: 17
0.90 0.05 0.05
Matches are distributed among these distances:
39 12 0.04
40 24 0.08
41 134 0.43
42 111 0.36
43 29 0.09
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAATAAATT
Found at i:12506 original size:83 final size:83
Alignment explanation
Indices: 12360--12738 Score: 622
Period size: 83 Copynumber: 4.6 Consensus size: 83
12350 TTTTACCAAA
* * *
12360 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCA
12425 CGACTTTGAAAAATAAATT
65 CGACTTTGAAAAATAAATT
*
12444 GCTCTTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
12509 GACTTTGAAAAATAAATT
66 GACTTTGAAAAATAAATT
12527 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCA
12591 CGACTTTGAAAAATAAATT
65 CGACTTTGAAAAATAAATT
* *
12610 TCTCCTCTAAACAGAGGCACCACAACTTTGAGAAAGTAAATTGCT-CTCT-AACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
*
12673 GACTTTGGAAAATAAATT
66 GACTTTGAAAAATAAATT
* *
12691 ACTCCTCTAAACAGAGGTACCACGACTTTTG-GAAAGTAAATTGCTCCT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAGAAAGTAAATTGCTCCT
12739 TGACAATCAT
Statistics
Matches: 280, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
81 68 0.24
82 14 0.05
83 162 0.58
84 36 0.13
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.23
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
GACTTTGAAAAATAAATT
Found at i:14002 original size:17 final size:17
Alignment explanation
Indices: 13982--14047 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 17
13972 TTAATTTGAA
13982 TCTCTTTTTTTTCATTT
1 TCTCTTTTTTTTCATTT
* * *
13999 TCTCATTTCTTTCTTTT
1 TCTCTTTTTTTTCATTT
14016 TCT-TTTTTCTTTC-TTT
1 TCTCTTTTT-TTTCATTT
* *
14032 TTTATTCTTTTTTCAT
1 TCTCTT-TTTTTTCAT
14048 CATCTTTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
16 8 0.21
17 27 0.69
18 4 0.10
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (17 bp):
TCTCTTTTTTTTCATTT
Found at i:14015 original size:22 final size:21
Alignment explanation
Indices: 13984--14071 Score: 97
Period size: 22 Copynumber: 4.0 Consensus size: 21
13974 AATTTGAATC
13984 TCTTTTTTTTCATTTTCTCATT
1 TCTTTTTTTTC-TTTTCTCATT
*
14006 TCTTTCTTTTTCTTTTTTC-TT
1 TCTTT-TTTTTCTTTTCTCATT
* *
14027 TCTTTTTTATTCTTTTTTCATCA
1 TCTTTTTT-TTCTTTTCTCAT-T
*
14050 TCTTTTTTCTCTTTTCTCATT
1 TCTTTTTTTTCTTTTCTCATT
14071 T
1 T
14072 TTCATCCATT
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
20 3 0.05
21 18 0.32
22 22 0.39
23 14 0.25
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (21 bp):
TCTTTTTTTTCTTTTCTCATT
Found at i:14044 original size:10 final size:9
Alignment explanation
Indices: 13984--14044 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 9
13974 AATTTGAATC
13984 TCTTTTTTT
1 TCTTTTTTT
13993 TCATTTTCTCATT
1 TC-TTTT-T--TT
14006 TCTTTCTTTT
1 TCTTT-TTTT
14016 TCTTTTTTCTT
1 TC-TTTTT-TT
14027 TCTTTTTTAT
1 TCTTTTTT-T
14037 TCTTTTTT
1 TCTTTTTT
14045 CATCATCTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
9 3 0.07
10 24 0.55
11 8 0.18
12 4 0.09
13 5 0.11
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:18024 original size:59 final size:59
Alignment explanation
Indices: 17932--18168 Score: 354
Period size: 58 Copynumber: 4.0 Consensus size: 59
17922 TCTTGTGTAG
*
17932 GGAAAATTGATACTTTCAATTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
17991 GGAAAATTGATACTTTCAACTTTTCCCAAAAA-ATATTTTTTTGGAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATAT-TTTTTTTGAAAATTTGATTTTTAA
* **
18049 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAAAATTTGATTTTTAA
*
18109 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTT-GAAAATTTGATTTTTA
18169 TTTAAAGAAA
Statistics
Matches: 163, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
57 2 0.01
58 56 0.34
59 43 0.26
60 49 0.30
61 13 0.08
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.46
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAAATTTGATTTTTAA
Found at i:18209 original size:17 final size:17
Alignment explanation
Indices: 18189--18232 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
18179 ATAGAATAAT
18189 AAAAATAAAA-AATAAAG
1 AAAAATAAAACAA-AAAG
* *
18206 AAAAGTAAAACAAAAAT
1 AAAAATAAAACAAAAAG
18223 AAAAATAAAA
1 AAAAATAAAA
18233 TTAAGATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.82, C:0.02, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAATAAAACAAAAAG
Found at i:18241 original size:17 final size:16
Alignment explanation
Indices: 18219--18258 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
18209 AGTAAAACAA
*
18219 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
18235 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
18252 AAATAAA
1 AAATAAA
18259 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:18688 original size:20 final size:20
Alignment explanation
Indices: 18663--18711 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
18653 GGTTGGAGAT
* *
18663 TCATCGGATTTTGGGTTTTG
1 TCATCGGAATCTGGGTTTTG
*
18683 TCATCGGAATCTGGGTTTTT
1 TCATCGGAATCTGGGTTTTG
18703 TCATCGGAA
1 TCATCGGAA
18712 GTTCGTCGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.27, T:0.43
Consensus pattern (20 bp):
TCATCGGAATCTGGGTTTTG
Found at i:19321 original size:13 final size:13
Alignment explanation
Indices: 19304--19443 Score: 59
Period size: 14 Copynumber: 9.8 Consensus size: 13
19294 ATTACAAGAA
19304 AAATAATAAAAAT
1 AAATAATAAAAAT
* *
19317 TAATAATAATAAT
1 AAATAATAAAAAT
* *
19330 AAATAAATTATAAT
1 AAAT-AATAAAAAT
* *
19344 ATATAATAAATAT
1 AAATAATAAAAAT
*
19357 AGAACT-ATATAAAT
1 A-AA-TAATAAAAAT
19371 AAAATACATATAAATAT
1 -AAATA-ATA-AAA-AT
* *
19388 TAATAGAAAAAAAT
1 AAATA-ATAAAAAT
19402 AAATAAGTAAAAAT
1 AAATAA-TAAAAAT
19416 ATACAT-ATAAGAATAAT
1 A-A-ATAAT-A-AA-AAT
19433 AAATAATAAAA
1 AAATAATAAAA
19444 TACATAAAAT
Statistics
Matches: 95, Mismatches: 17, Indels: 30
0.67 0.12 0.21
Matches are distributed among these distances:
13 24 0.25
14 36 0.38
15 14 0.15
16 15 0.16
17 6 0.06
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (13 bp):
AAATAATAAAAAT
Found at i:20344 original size:26 final size:26
Alignment explanation
Indices: 20308--20360 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20298 GTTGACTTAG
20308 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20334 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
20360 G
1 G
20361 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:20842 original size:27 final size:26
Alignment explanation
Indices: 20785--20842 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
20775 CTCCTTCCGA
* * **
20785 AAAAATTTTAAAAAATCCTGAACCGC
1 AAAAAGTTTAAAAAATCATGAAAAGC
*
20811 AAAAAGTTTCAAAAATCATGAAAAGC
1 AAAAAGTTTAAAAAATCATGAAAAGC
20837 AGAAAA
1 A-AAAA
20843 CGAGTCGCCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.57, C:0.14, G:0.10, T:0.19
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAGC
Found at i:21242 original size:26 final size:26
Alignment explanation
Indices: 21206--21258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21196 GTTGACTGAG
21206 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
* *
21232 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
21258 G
1 G
21259 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:21579 original size:897 final size:897
Alignment explanation
Indices: 19570--22058 Score: 3538
Period size: 897 Copynumber: 2.8 Consensus size: 897
19560 GGTGTCTACA
* * * *
19570 GGTAGGATTGGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATCATATGCGATGGGT
1 GGTAGGATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
19635 GCTGGTACTTGGCCCTTATGTT-GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
66 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
19699 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTAGAATGGGGACAC
131 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATGGGGACAC
*
19764 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
196 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCC
* * * *
19829 AAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCGAAAACACCTTCTGAAAAAATTTTAAA
261 AACAAAAATACAAGGATCACGTCTACAAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * * * * *
19894 AAGTCCTGAACCGTAAAAAGTTTCAAGAATCGTGAAAAATTGAAAACGATTCGTCTT-CCATTAA
325 AAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
19958 ACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
390 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
20023 CAGAAATATGAAGATGTGTCTAAACCCACCAACCACCCTATCGATCCACAGCTTCCGCATCCCAT
455 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
* * *
20088 CTCTCTGGTCGGCATAGTGACCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
520 CTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * *
20153 ACAGAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTGTGGATTCAAGATCGACAGCAC
581 ACGGAGTTCATTCCCAGTCTAAGATCACACCAGACCAAGGGTTGCGGA-GCAAGATCGGCAGCAC
* ** * *
20218 GCAGAGGGGGACCCGGTTGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCTAGCTGAGCGCCCGC
645 GCAGAGGGGGACCCGGTCGATCCC-AGCTTACGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGC
** * *
20283 ACGTTCATTTCGTAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCA
709 ACACTCATTTCGTAGGTTGACTGAGGCATACAGAGTTCAGTCCCAGTCTAAGCATACAGAGTTCA
* * * *
20348 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTGGCGACAGCACAAGCTGGGCTCAGGCATGAGCT
774 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTGACGACAACACAAGCTAGGCTCAGGCATGAGCT
* * ** ** * * *
20413 GGTGCCGCATTTTTCTTCGTCGAAGCACCATCGTCAGAGCATTGCTGGAGAACCTGACC
839 GGTGCCGAATTTTTCTTCGCCGAAGCACCATCAACAGAGCATCACCGAAAAACCTGACC
*
20472 GAT-GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
1 GGTAGG-ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
20536 TGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
65 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
20601 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GCAATGGGGAC
130 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAG-AATGGGGAC
* * *
20665 ACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCAAG
194 ACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAG
* *
20730 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTA
259 CCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTA
* ** *
20795 AAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAGCAGAAAACGAGTCGCCTTGCCATG
323 AAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
20860 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCA
388 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
20925 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
453 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
** * *
20990 GTCTCTCTGGCCGGCGTAGTGCCCGTTCGCCCGTCCGCTCGTTTCGTCTGTTGGCTTAGGCATAC
518 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * *
21055 GGAGTTCATTCCCTGTCTAAGACCGCACAAGACCAATGGTTGCGGCAGCAAGATCGGCAGCACGT
583 GGAGTTCATTCCCAGTCTAAGATCACACCAGACCAAGGGTTGCGG-AGCAAGATCGGCAGCACGC
* * * *
21120 AGAGGGGGACCC-ATCGATCCCCGGTTACGCATCCCG-CCCTACTGGCCGGCTGAACGCCCGCAC
647 AGAGGGGGACCCGGTCGATCCCAGCTTACGCATCCCGCCCCT-CTGGCCAGCTGAACGCCCGCAC
* * * **
21183 ACTCGTTTCGTGGGTTGACTGAGGCATACGGAGTTCAGTCCCAGTCTAAGCATATGGAGTTCATT
711 ACTCATTTCGTAGGTTGACTGAGGCATACAGAGTTCAGTCCCAGTCTAAGCATACAGAGTTCATT
* * * ** * * *
21248 CCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGCAACACGTGCTAGTCTCGGGCATGTGCTGG
776 CCCAGTCTAAGATCGGACCAGACCGAGGGTGACGACAACACAAGCTAGGCTCAGGCATGAGCTGG
* * * **
21313 TGCCGAATTTTTCTTTGCCGAGGCACCATCAACGGAGCATCACCGAAAAACCTGATT
841 TGCCGAATTTTTCTTCGCCGAAGCACCATCAACAGAGCATCACCGAAAAACCTGACC
*
21370 GGTAGGATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTACGATGGGT
1 GGTAGGATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
21434 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCAAGAACTCACACCCCCTT
66 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
21499 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTAGAATGGGGACAC
131 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATGGGGACAC
* * *
21564 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTATGCCTA-T
196 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTG-CAAGC
* *
21628 CAACAAAAATACAAGGATCACGTCTAAAAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAA
260 CAACAAAAATACAAGGATCACGTCTACAAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * *
21693 AAAATCCCGAACCACAAAACA-TTTCGAAAATCGTAAAAAATAGAAAATGAGTCATCTTGCCATG
324 AAAATCCTGAACCGCAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
21757 AAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCA
388 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
21822 TGCAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCTACGGCTTGTGCATCCC
453 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCC
* * *
21887 GTCTCTCTGGCAGGCGTAGTACCCGCCCGCCCGTCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
518 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGT----CCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * **
21952 ATACGGAGTTCATTCCCAGTCTAAGATTAAACCAGACCAAGGGTTGCAGTAGCAGGATCAGTGGC
579 ATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACCAAGGGTTGC-GGAGCAAGATCGGCAGC
*
22017 ACGCAGAGGGGGACCCGGTCGATCCCTGACTTACGCATCCCG
643 ACGCAGAGGGGGACCCGGTCGATCCCAG-CTTACGCATCCCG
22059 TGGGTTGAGT
Statistics
Matches: 1411, Mismatches: 157, Indels: 37
0.88 0.10 0.02
Matches are distributed among these distances:
897 473 0.34
898 218 0.15
899 9 0.01
900 104 0.07
901 93 0.07
902 91 0.06
903 279 0.20
904 144 0.10
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GGTAGGATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCC
AACAAAAATACAAGGATCACGTCTACAAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCACACCAGACCAAGGGTTGCGGAGCAAGATCGGCAGCACGCAGAG
GGGGACCCGGTCGATCCCAGCTTACGCATCCCGCCCCTCTGGCCAGCTGAACGCCCGCACACTCA
TTTCGTAGGTTGACTGAGGCATACAGAGTTCAGTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCGAGGGTGACGACAACACAAGCTAGGCTCAGGCATGAGCTGGTGCCG
AATTTTTCTTCGCCGAAGCACCATCAACAGAGCATCACCGAAAAACCTGACC
Found at i:23862 original size:26 final size:26
Alignment explanation
Indices: 23826--23878 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23816 GTTGACTTAG
*
23826 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
23852 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
23878 G
1 G
23879 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:24476 original size:897 final size:895
Alignment explanation
Indices: 22949--24590 Score: 2491
Period size: 897 Copynumber: 1.8 Consensus size: 895
22939 GTTGACTTAG
* * * * *
22949 GCATACAGAGTTCATTTCCAGTCTAAGATCAGACAGGACCGAGGGTTGCAGTAGCACATTCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTACAGCAGCACATGCTGGG
* * *
23014 CTCGAGATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGGGAA
66 CTCGACATGTGCTGGTGACACATTTTTCTTCGCCGGGGCACCA-C-T----GCATCG-CGGAGAA
* * *
23079 CCTGACTGGCGACATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGTGTGTGCACAAGATGTGCG
124 CCTGACTGGCGACATTGGAGTTCCGACGATCGAGGGGGCGGGGGGGGGTGTGCACAAGATGTGCG
* *
23144 ATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
189 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
23209 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
254 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAATGG
* *
23274 GGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGATTTTTTAGCTGAATTGTTTTGAG
319 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGAG
* * * *
23339 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCAAAAAATT
384 CATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAAT
* * *
23404 TTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
449 TTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCATCTTGC
* * * *
23469 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCGTT
514 CATGAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAAAGGCATT
*
23534 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCT-T
579 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-TGC
* *
23598 ATCCCGTCTCTCTGGTC-GGAGTAGTGCCCGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGC
643 ATCCCGTCTCTCTGG-CAGGAGTAGTGCCCG-CCCGCCCGCCCGCCCGCTAGTTTCATCGGTTGC
23662 CTTAGGCATACGGAGTTCATTCCC-AGTCTAAGAATAGACCCGATCGAGGGTTGTGGTAGCAGGA
706 CTTAGGCATACGGAGTTCATTCCCAAG-CTAAGAATAGACCCGATCGAGGGTTGTGGTAGCAGGA
23726 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCAGGCTTGCGCATCCCACCCCTCTGGCCGGTT
770 TCGGCAGCACACAGAGGGGGACCCGACCGATCCCAGGCTTGCGCATCCCACCCCTCTGGCCGGTT
23791 GAGTGCCCTCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
835 GAGTGCCCTCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * *
23852 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCATATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTACAGCAGCACATGCTGGG
* * * *
23917 CTCAGACATGTGCTGGTGACGCATTTTTCTTTGTCGGGGCACCA-T-CA-C-CGGAGACCCTGAC
66 CTC-GACATGTGCTGGTGACACATTTTTCTTCGCCGGGGCACCACTGCATCGCGGAGAACCTGAC
* * *
23978 TGGTGGCATTGGAGTTCCGACGATCGGGGGGGCGGGGTGGGGGGTGTGCACCCATA-ATGTGCGA
130 TGGCGACATTGGAGTTCCGACGATCGAGGGGGC-GGG-GGGGGGTGTGCA--CA-AGATGTGCGA
*
24042 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCAAGAACTCACACC
190 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
*
24107 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGGAATGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAATGGG
* *
24172 GACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATT-TTTTTATG
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGA-G
* * *
24236 CCTATCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAAT
384 CATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAAT
*
24301 TTTAAAAAATC-CTGAACCACAAAACA-TTTTGAAAATCATAAAAAATAGAAAACGAGTCATCTT
449 TTTAAAAAATCTC-GAACCACAAAA-AGTTTTAAAAATCATAAAAAATAGAAAACGAGTCATCTT
*
24364 GCCATGAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAATGGCA
512 GCCATGAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAAAGGCA
* * *
24429 TTGG-A-ATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCTATGGCTTG
577 TTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
24492 TGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTAGTTTCATCGGTTG
640 TGCATCCCGTCTCTCTGGCAGGAGTAGTGCCCGCCCGCCCGCCCGCCCGCTAGTTTCATCGGTTG
*
24557 GCTTAGGCATACGGAGTTCATTCCCAAGCTAAGA
705 CCTTAGGCATACGGAGTTCATTCCCAAGCTAAGA
24591 TTGAACCAGA
Statistics
Matches: 669, Mismatches: 56, Indels: 35
0.88 0.07 0.05
Matches are distributed among these distances:
893 40 0.06
894 2 0.00
895 14 0.02
896 70 0.10
897 446 0.67
898 2 0.00
901 1 0.00
903 59 0.09
904 35 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACAGGACCAAGGGTTACAGCAGCACATGCTGGG
CTCGACATGTGCTGGTGACACATTTTTCTTCGCCGGGGCACCACTGCATCGCGGAGAACCTGACT
GGCGACATTGGAGTTCCGACGATCGAGGGGGCGGGGGGGGGTGTGCACAAGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGACAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGAGCATACCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTAAAA
AATCTCGAACCACAAAAAGTTTTAAAAATCATAAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGCACCATTGTATGAAGTTACAAGCCATAAAAAAGGCATTGGCACAT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
TCTCTGGCAGGAGTAGTGCCCGCCCGCCCGCCCGCCCGCTAGTTTCATCGGTTGCCTTAGGCATA
CGGAGTTCATTCCCAAGCTAAGAATAGACCCGATCGAGGGTTGTGGTAGCAGGATCGGCAGCACA
CAGAGGGGGACCCGACCGATCCCAGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGTGCCCTCA
TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:26487 original size:876 final size:870
Alignment explanation
Indices: 24672--26774 Score: 2756
Period size: 876 Copynumber: 2.4 Consensus size: 870
24662 ACGCATCCCG
* * * * * *
24672 TGGGTTGAGTTAGGCATACGAGTTCATTCCCAGTCTAAAATCGGACCGGACCAAGGGTTATGGCA
1 TGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCA
* * * *
24737 GCACATGCTAGGCTCAGGCATGTGCTGGTGCCACATTTTTCATCACC-GGG------G-CAC-CA
66 GCACATGCTGGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCACCGGGGACCATCGTCACACA
* * *
24793 TCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCCACGATCGGAGGGGCCGAGGGGTGTGTGCA
131 TCACCGGAGAACCTGACCGACGGCATTGGGG-TTCCACGATCGG-GGGGCCGGGGGGTGTGCGCA
* * *
24858 CATGATGCGCGATGGGTGCTGGTACTTGGCCGTTATATTGTCCCCCTATCCCTCATCAAACCTCG
194 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG-CCCCCTATCCCTCATCAAACCTTG
* * * *
24923 AGAACTCAC-TCACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAATAGCTATTAAAG
258 AGAACTCACAAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
24987 TGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAAACTTGTACACTCTGAGTTTTTAGCTG
322 TGTTTGAAATGGGGACATTTTTTTCAAATGGTCACACAAACTTGTACACTCTGAGTTTTTAGCTG
25052 AATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
387 AATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCC
* * ** * *
25117 TTTCAAAAAAATTTAAAATATCTCAAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATG
452 TTTCAAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
** *
25182 AGTCGTCTTCCCATGAAACTTCACGTGAGGTCTTAAGGGACCATTGTATGAATTTACAAGCCATA
517 AGTCACCTTCCCATGAAACTTCACGTGAGGTCATAAGGGACCATTGTATGAATTTACAAGCCATA
* *
25247 AAAATGGCATTGGCACACAGGAATATGAAGATGTGCCTAAACCCACCTGCCACCTTATCGATCCA
582 AAAATGGCATTGGCACACAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * ** * * * *
25312 CGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCTGCCCGTTCGTTTCG
647 CGACTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCG
* * **
25377 TCTGTTGGCTCAGGCATACGGAGTTCATTCCTTGTCTAAGATCAGACCAGACCAAGGGTTGCGGC
712 TCTGTTGGCTCAGGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGC
* ** * * *
25442 AGTAGGATCGGTAGCACGCAGAGGGGAACCCAACCGATCATCGGCTTGCGCATCCTAGCCCTCTG
777 AATAGGATCGACAACACGCAGAGGGGAACCCAACCGATCACCGGCTTACGCATCCTAGCCCTCTG
* * *
25507 GCTGGCTGAGCGCCCGCACGCTCGTTTCG
842 GCCGGCTGAGCGCCCGCACACTCGTTTCA
* * ** *
25536 TGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTGTAAGATCGGATTAGATCGAGGGTTGCGGC
1 TGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGC
* *
25601 AGCACATGCTGGGC-CTAGGAATGTGCTGGTGTCGCATTTTTCTTCACCGGGGTACCATCGTCAC
65 AGCACATGCTGGGCTC-AGGCATGTGCTGGTGACGCATTTTTCTTCACCGGGG-ACCATCGTCAC
* * * * *
25665 AGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTAGCAATCGGGGGGATCGGGGGGGCGT
128 A-CATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCA-CGATCGGGGGG--CCGGGGGGTGT
* * * *
25730 GCGCACATGATGTGTGATGGATGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAAC
189 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAAC
*
25795 CTTGAGAACTCACAACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
254 CTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
25860 AAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACACAAACTTGTACACT-TCGAGTTTTTA
319 AAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACACAAACTTGTACACTCT-GAGTTTTTA
**
25924 GCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCATGTCGT-CCAAGTTTGGGGCCAAA
383 GCTGAATTTTTTTGTGCACGCCAACAAAAATACAAGGATCACATC-TACCAAGTTTGGGGCCAAA
** *
25988 ACTCCTTTTGAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
447 ACTCCTTTCAAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
26053 AAACGAGTCACCTTCCCATGAAACTTCACGTGAGGTCATAAGGGACCATTGTATGAATTTACAAG
512 AAACGAGTCACCTTCCCATGAAACTTCACGTGAGGTCATAAGGGACCATTGTATGAATTTACAAG
**
26118 CCATAAAAATGGCATTGGCATGC-GGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
577 CCATAAAAATGGCATTGGCACACAGG-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
26182 GATTCATGACTTGTGCATCCCATCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCACGCTC
641 GATCCACGACTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCACGCTC
* * * *
26247 GTTTCGT-TGGTTGGCTTAGGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCGGATCGAGGG
706 GTTTCGTCT-GTTGGCTCAGGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * * * *
26311 TTGCGGCAATAGGATCGACAACACGCAGAGGGGGACTCGACGGATCCCCGAG-TTAC-CTATCC-
770 TTGCGGCAATAGGATCGACAACACGCAGAGGGGAACCCAACCGATCACCG-GCTTACGC-ATCCT
* *
26373 CGCCCCTCTGGCCGGCT-ATGCGCCCGCACACTCGTTTTA
833 AG-CCCTCTGGCCGGCTGA-GCGCCCGCACACTCGTTTCA
*
26412 TGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACCGC
1 TGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGC
* * * * * ** ***
26477 AGTACATGCTGGGCTCGGGCATGTGCTGGTAACGTATTTTTCTTCATCGAGCCACCATCGTTGGA
65 AGCACATGCTGGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCACCG-GGGACCATCGTCACA
* ** **
26542 TCATCATCGGAGAACCTGACCGACAACA-TGGAGGTTCCATCGATCGGGGGGGCTAGGGGGTGTG
129 -CATCACCGGAGAACCTGACCGACGGCATTGG-GGTTCCA-CGATC-GGGGGGCCGGGGGGTGTG
* * *
26606 CGCACAAGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTTACCCCCTATCCCTCATCAAAC
190 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA-TTGCCCCCTATCCCTCATCAAAC
* *
26671 C-TGAAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
254 CTTG-AGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
26735 AAAGTGTTTGAAATGGGGATAATTTTTTCAAAT-GTCACAC
318 AAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAC
26775 GCAGAGGGCG
Statistics
Matches: 1071, Mismatches: 137, Indels: 51
0.85 0.11 0.04
Matches are distributed among these distances:
864 19 0.02
865 76 0.07
866 3 0.00
873 1 0.00
874 3 0.00
875 72 0.07
876 839 0.78
877 58 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (870 bp):
TGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCA
GCACATGCTGGGCTCAGGCATGTGCTGGTGACGCATTTTTCTTCACCGGGGACCATCGTCACACA
TCACCGGAGAACCTGACCGACGGCATTGGGGTTCCACGATCGGGGGGCCGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGCCCCCTATCCCTCATCAAACCTTGAGA
ACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTT
TGAAATGGGGACATTTTTTTCAAATGGTCACACAAACTTGTACACTCTGAGTTTTTAGCTGAATT
TTTTTGTGCACGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTC
AAAAAAATTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
ACCTTCCCATGAAACTTCACGTGAGGTCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACACAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
TTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCACGCTCGTTTCGTCTG
TTGGCTCAGGCATACAGAGTTAATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGCAATA
GGATCGACAACACGCAGAGGGGAACCCAACCGATCACCGGCTTACGCATCCTAGCCCTCTGGCCG
GCTGAGCGCCCGCACACTCGTTTCA
Found at i:26896 original size:26 final size:26
Alignment explanation
Indices: 26866--26918 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26856 GTTGACTTAG
*
26866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
26892 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
26918 G
1 G
26919 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:27797 original size:26 final size:26
Alignment explanation
Indices: 27761--27816 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
27751 TGGGTTGACT
*
27761 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
27787 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
27813 TAAG
1 TAAG
27817 ATCAGACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:29483 original size:26 final size:26
Alignment explanation
Indices: 29453--29505 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29443 GTTGACTTAG
* *
29453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
29479 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
29505 G
1 G
29506 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:30280 original size:885 final size:886
Alignment explanation
Indices: 28379--30743 Score: 3179
Period size: 885 Copynumber: 2.6 Consensus size: 886
28369 TGCCGGTTCA
* * *
28379 CCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATTAGACC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
28444 AGATTGAGGGTTGCGACAGTAAGATCGGCAGTAGGTAGAGAGGGACCCGACCGATCCAGGGCTTG
66 AGACTGAGGGTTGCAACAGTAAGATCGGCAGCACGCAGAG-GGGA-CCGACCGAT------C---
* * * *
28509 CGCATCCCCACCC-TCTAGCCGGCTGAGCGCCCACACGCTTGTTTCGGGGGTTGACTTAGGCATA
120 CGCATCCCCACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* ** ** * *
28573 CGAAGTTCATTCCCAGTCTAAGCACGCGGAGTTCATTCTTAGTCTAAGATTGGACGGGATCGAGG
185 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TGGACCGGACCGAGG
* * * *
28638 GTTACGGCAGCACATGCTTGGCTCGGGCTTGTTCTGGT-CCACATTTTTCTTCACCGGGGCACCA
249 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA
* * * * *
28702 TCGTCGGTGCATCGTCAGAGAACCTAATCGACGGCATTGGGGTTCCGACGATCGGTGTGGCCGGA
314 TCGTCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGGGGATCCGACGATCGGGGCGGCCGG-
*
28767 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
378 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * *
28832 TCATAAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAG
443 TCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
28897 TAGCCATTAAAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCG
508 TAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
28962 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
573 AGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
** *
29027 GACAAAAACTCCTTCTGGAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATAA
638 GACAAAAAAACCTTCTGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATAA
* * * *
29092 AAAATAAAAAACTAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
703 AAAATAAAAAACTAATCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCACTGTATGAA
29157 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCA
768 TTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCA
* *
29222 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCCCGCC
833 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCG-C
* * * *
29277 CACCTGCCCACTCGTTTCATCGATTGGCTTAGGCATATGGAGTTCATTCACAGTCTAAGATCAGA
1 C-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* *
29342 CCAGACTGAGGGTTGCAGCAGCAAGATCGGCAGCACGCAGAGGGG---GAACCGAT-CG-ATCCC
64 CCAGACTGAGGGTTGCAACAGTAAGATCGGCAGCACGCAGAGGGGACCG-ACCGATCCGCATCCC
* * * * *
29402 CGCCCTTCTGGCTGGCTGAGCG-TCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTC
128 CACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
** * * * **
29466 ATTCCCAGTCTAAGCATATAGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCGAA
193 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-GGACCGGACCGAGGGTTGCGGC
** * **
29531 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCACCGGA
257 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGA
** ** * * ** * * *
29596 GCATCACCAGAGAATGTGACCGGCGGCATTGGGGATCCGGTGATTGGGGGGGCCGGGGGGGTGTA
322 GCATCGTCAGAGAACCTAACCGACGGCATTGGGGATCCGACGATCGGGGCGGCCGGGGGGGTGTG
* * * * * * *
29661 CGAACATTATATGCGATGGATGCTGGCACTTGCCCCTTATATCGGCCCCCTATCCCTCATCAAAC
387 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
29726 CTCGAGAATTCACACCATCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
452 CTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
29791 AAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTTGAGTTTTTAG
517 AAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* * * *
29856 CTGAAT-TGTTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCTAGTTTAGGGCCAAAA
582 CTGAATGT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGACAAAA
* * * *
29920 AAACTTTCTGAAAAAATTTTGAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
645 AAACCTTCTGAAAAAATTTTAAAAAATCTC-AAACCGCAAAAAGTTTCAAAAATCATAAAAAATA
* * *
29984 GAAAA-TGAATCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCACTGTATGAGTTTAT
709 AAAAACT-AATCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCACTGTATGAATTTAC
* * ** * **
30048 AGGGCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAATTCCACCTACCACCCTA
773 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTA
* * *
30113 TTGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCTG-
838 TCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGC
* *
30161 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * *
30226 AGACCAAGGATTGCAACAGTAGGATCGGTAGCATGCAGAGGGGACCTGACCGATCCCCAGCATGC
66 AGACTGAGGGTTGCAACAGTAAGATCGGCAGCACGCAGAGGGGACC-GACCGAT--CC-GCAT--
*
30291 GCATCCCACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACT
125 -C--CCCACCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
30356 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGAGACTGGACCGAGGGT
187 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATG-GACCGGACCGAGGGT
*
30421 TGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC
251 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATC
* * *
30486 GTCGAAGCATCGTCGGAGAACCTAACCGACGGCTTTGGGGATCCGACGATCGGGGCGGCCGGGGG
316 GTCGGAGCATCGTCAGAGAACCTAACCGACGGCATTGGGGATCCGACGATCGGGGCGGCC--GGG
*
30551 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCT
379 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
30616 CATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGT
444 CATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
30681 AGCCATTAAAGTGTCTGAAATGGGAAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
509 AGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
30744 TTTCATATGG
Statistics
Matches: 1266, Mismatches: 173, Indels: 56
0.85 0.12 0.04
Matches are distributed among these distances:
882 91 0.07
883 2 0.00
884 3 0.00
885 360 0.28
886 307 0.24
888 1 0.00
889 1 0.00
890 2 0.00
893 1 0.00
895 24 0.02
896 199 0.16
898 181 0.14
899 5 0.00
900 89 0.07
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (886 bp):
CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACTGAGGGTTGCAACAGTAAGATCGGCAGCACGCAGAGGGGACCGACCGATCCGCATCCCCAC
CCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATGGACCGGACCGAGGGTTGCGGCAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT
CGTCAGAGAACCTAACCGACGGCATTGGGGATCCGACGATCGGGGCGGCCGGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
ATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACAAAAAAACCT
TCTGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATAAAAAATAAAAAACT
AATCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCACATAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGC
Found at i:30385 original size:26 final size:26
Alignment explanation
Indices: 30349--30401 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30339 GTTGACTTAG
*
30349 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30375 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30401 G
1 G
30402 ATGAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30926 original size:26 final size:26
Alignment explanation
Indices: 30890--30942 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30880 GTTGACTTAG
*
30890 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30916 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
30942 G
1 G
30943 ATGAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:32228 original size:26 final size:26
Alignment explanation
Indices: 32192--32244 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
32182 GTTGACTTAG
32192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32218 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
32244 G
1 G
32245 ATCGGACTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:33709 original size:26 final size:26
Alignment explanation
Indices: 33673--33725 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
33663 GTTGACTTAG
*
33673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
33699 GCATACGGAGTTAATTCTCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
33725 G
1 G
33726 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:34631 original size:27 final size:26
Alignment explanation
Indices: 34581--34631 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
34571 GACTTAGGCA
* * *
34581 TACGGAGTTCATTCCTAGTGTAAGCG
1 TACGAAGTTCATTCCAAGTCTAAGCG
34607 TACGAAGTTCCATTCCAAGTCTAAG
1 TACGAAGTT-CATTCCAAGTCTAAG
34632 ATTGGACTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.38
27 13 0.62
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
TACGAAGTTCATTCCAAGTCTAAGCG
Found at i:35534 original size:26 final size:26
Alignment explanation
Indices: 35482--35534 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
35472 TTTGACTTAG
* *
35482 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
35508 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
35534 G
1 G
35535 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:36081 original size:900 final size:901
Alignment explanation
Indices: 33018--36312 Score: 4520
Period size: 905 Copynumber: 3.7 Consensus size: 901
33008 GCTTGGGCAT
33018 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
1 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
**
33083 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGT
66 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
33148 ACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTATTTTGTGCATA
131 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATG
* * ** **
33213 CCAACAAAAATACAAGGATCACGTCCACTAAGTTTGGGAACAAAGGTCCTTCC-AAAGAAATTTT
196 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAA-AAATTTT
* * * ** *
33277 AAAAAATCTCGAACTGTAAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGTATTGCCA
260 AAAAAATCCCGAACCG-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
33342 TGAAAC-T----T-----C-------ACC------TGAATTTACAAGCCATAAAAATGGCATTGG
324 TGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
33384 CATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGA-GCGT
389 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-ACGCAT
* * * * * * *
33448 CCCGTGTTTTTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGCCTTA
453 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
* * * *
33513 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-AGACCGAGTGTTACGGCAGCAGGGTTGG
518 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGA-ACCGAGGGTTACGGCAGCAGGATTGA
* **
33577 CAGCACGTAAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
582 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGC
* * * *
33642 GCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
646 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGA
* * * * * *
33707 AGTTAATTCTCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGTAGCACATGCTAGCCTTG-GAC
711 AGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAG-C
* * * * * * *
33771 ATGTGCTGGTGCCACATTTTTCTTCGTCAGTGCACCATCGTCTGAGCGTCGCCGGATAACCTGAC
775 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGAC
* * * *
33836 CG--GTAGCATTGAGGTTTCGACGATCGGGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGG
840 CGACG-A-CATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
33899 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
1 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
33964 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
66 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
34029 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
131 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATG
* * *
34094 CCAAAAAAAATATATGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTT-CGAAAAAATT
196 CCAACAAAAATACA--AGGATCACGTCTACCAAGTTTGGGGTCAAAACT-CCTTCCGAAAAAATT
** * ** * *
34158 TTAAAAAATTTCTAACAACAAAAAGTTTCGAAAATCGTCAAAAATAGAAAACGAGTCGTCTTGCC
258 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
34223 ATGAAACTTCACATGAAGGCTTAAGGGACCATTTTGTGAATTTACAAGCCATAAAAATGGCATTG
323 ATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
34288 GCATGCAGAAATATGAAGATGTGCCTCAACCCACCTACAACCCTATCGATCCACAGCTTACGCAT
388 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT
* * * * *
34353 CCCATCTCTCTGGCCAGCATAGTGCCCGCCCGCCCGCCCGTCCGCTCATTTCGTCGGTTGGCTTA
453 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTA
* * * * * * * *
34418 GGCATACGGAGTTCATTCCCA-TGCTAAGGTCAGAC-CAGATCGAGAGTTACGGTAGCAGTATCG
518 GGCATACGGAGTTCATTCCCAGT-CTAAGATCGGACTGA-ACCGAGGGTTACGGCAGCAGGATTG
** * * * *
34481 GTAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGACTGAG
581 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC-TCTGGCCGGCTGAG
* * *
34546 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTGTAAGCGTACG
645 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACG
* * *
34611 AAGTTCCATTCCAAGTCTAAGATTGGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTC-AG
710 AAGTT-CATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGA-
* * * * *
34675 GCATCTGTTGCTGCCGCATTTTTCTTCATCGGGGCACCATC-CCAGAGCATCGTCGGAGAACCTG
773 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTG
* * *
34739 ACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC-AG
838 ACCGACGACATTGGGGTTCCGACGA-T-CGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGA-
34803 TGG
899 TGG
*
34806 GTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
1 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
34871 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGACATGGGGAC
66 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
34935 ACTTTTTTCAAATGGTCACAAAATATTGTACACTTTGAGTTTTTAGCTGAATTATTTTGTGCATG
131 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATG
*
35000 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTA
196 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTT-
* * * **
35065 AAAAAAACCCGAACCGTAAAAAATTTTGAAAATCGTGAAAAATAGAAAATTAGTCGTCTTGCCAT
260 AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
35130 GAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
325 GAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
35195 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTT-CTGCATC
390 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC-GCATC
* *
35259 CCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCACCCGCCCGCTCATTTCATCGGTTGGCTTAG
454 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
* * **
35324 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGAACTGAGGGTTGTGGCAGCAGGATTGACA
519 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCAGGATTGACA
* * * ** * *
35389 GCACGTAGAGTGGGACCCGGCCGATCCCCGGCTTGCGCTTTGCGCCACTCT-GTCGGCTGAGCAC
584 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGGCTGAGCGC
* ** *
35453 CCGCACGCTCGTTTCATGTTTTGACTTAGGCATACGGAGTTCATTCCCAATGTAAGCATACGAAG
648 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGAAG
* * * *
35518 TTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGTTTCCGGTAGTACATGCTGGGCTCGAGCAT
713 TTCATTCCCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCAT
* *
35582 GTGCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCG
777 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCG
35647 ACGACATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
842 ACGACATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
* ** *
35707 GTGCTCGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCT
1 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
35771 TTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
66 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
35836 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTATGCATG
131 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATG
* *
35901 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTA
196 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTA
35966 AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
261 AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * *
36031 AAACGTCACGGGAAGGCTTAAAGGACCATTGTATGAATTTACAGGCCATAAAAATGGGATTGGAA
326 AAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
36096 CGTAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
391 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
36161 GTCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
456 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
** * * * * *
36222 ATATAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCAGGATCGGA-AG
521 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCAGGAT-TGACAG
* *
36286 CACATCGAGGGGGACCCGACCGATCCC
585 CACGTAGAGGGGGACCCGACCGATCCC
36313 TGACTTACTC
Statistics
Matches: 2142, Mismatches: 219, Indels: 91
0.87 0.09 0.04
Matches are distributed among these distances:
881 201 0.09
882 49 0.02
883 48 0.02
884 7 0.00
887 1 0.00
892 1 0.00
896 114 0.05
897 2 0.00
899 3 0.00
900 294 0.14
901 178 0.08
902 8 0.00
903 87 0.04
904 165 0.08
905 663 0.31
906 177 0.08
907 144 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAACCGAGGGTTACGGCAGCAGGATTGACAGC
ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGAAGTTC
ATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGA
CATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
Found at i:37090 original size:26 final size:26
Alignment explanation
Indices: 37060--37115 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
37050 TGTGTTCACT
37060 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
37086 TAAGCATACGGAGTTCCTTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
37112 TAAG
1 TAAG
37116 ATCGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:38710 original size:171 final size:164
Alignment explanation
Indices: 38422--38887 Score: 387
Period size: 171 Copynumber: 2.8 Consensus size: 164
38412 TACCACCCTA
* * *
38422 TCGATCCACGGCTTGCGCATCTCGTCTCTCTAGTCAGCGTAGTGCCTGCCCGCCCGCGCCCGTTT
1 TCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCAGCGTAGTGCCCGCCCACCCGCGCCCGTTT
* * * * **
38487 CGTCAGTTGGCTTAGGCTTACGGAGTTCATTCCTAGTCTAAGATTGGACCAGA-TCGAGGGTTGC
66 CGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCAGACT-GAGGGTTGC
* *
38551 AGCAGCAGGATCGGA-AGCACGCAGAGGGGGACCCGG
130 AGCAGCAGGAT-GAACAGCACACAGAGGGGGACCC-G
* * * *
38587 TCGATCCCCGGCTTGCGCATCAT-GTCTCTTTGGCCGGCGTAGTGCCCGCCCACCCGCACGCCCG
1 TCGATCCACGGCTTGCGCATC-TCGTCTCTCTAGCCAGCGTAGTGCCCGCCCACCCG--CGCCCG
*
38651 CTCATTTCGTCAGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAG
63 ----TTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAG
** * * *
38716 GGTTGTGGTAGCAGGATTAACAGCACACATAGGGGGACCCG
124 GGTTGCAGCAGCAGGATGAACAGCACACAGAGGGGGACCCG
* * * * * * * * * **
38757 ACAGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-T-GAGCACCG-GCA----CGCTAGT
1 TC-GATCCACGGCTTGCGCATCTCGTCTCTCTAGCCAGCGTAGTGC-CCGCCCACCCGCGCCCGT
** * * * *
38815 TTCGTGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTT
64 TTCGTCAGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTT
*
38879 GCGGCAGCA
128 GCAGCAGCA
38888 CATGCTGGGC
Statistics
Matches: 248, Mismatches: 40, Indels: 32
0.77 0.12 0.10
Matches are distributed among these distances:
158 1 0.00
159 63 0.25
163 4 0.02
165 47 0.19
166 1 0.00
167 6 0.02
169 5 0.02
170 7 0.03
171 113 0.46
172 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (164 bp):
TCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCAGCGTAGTGCCCGCCCACCCGCGCCCGTTT
CGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCAGACCAGACTGAGGGTTGCA
GCAGCAGGATGAACAGCACACAGAGGGGGACCCG
Found at i:40834 original size:899 final size:896
Alignment explanation
Indices: 38834--41372 Score: 3060
Period size: 899 Copynumber: 2.8 Consensus size: 896
38824 TGACTTAGGC
* **
38834 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCTG-ACCGAGGGT-TGCGGCAGCACATGCTGGG
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACCGA-GGTCTGCGGCAGCACATGCAAGG
* * * * ** * * * *
38897 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACTGCAGA
64 CTCGGGCATGCGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
38962 ACCTGACCGGCTGCATTGGGGTTCCGACGATCGGGGGTGCC-AGGGGGTGTGCCCACATGA-TGT
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGT-CCGAGGGGGTGTGCACACATGATTGT
* * * *
39025 ACGATTGGTTCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCG-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
39090 CACCCCCGT-AAAGAGCATTTGAGATTTTACAGGATTGCTGCGAGTAGCAATTACAGTGTATGAA
257 CA-CCCCTTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTAAA
* *
39154 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
321 ATGGGGACACTTTTTTC-AATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTT
* ** * * *
39219 TGTGCATGTCGAAAAAAATACAAGGATCACACCCACCAAGTTTGGGGCCAAAAATCCTTCCTAAA
385 TGTGCATGAC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** *
39284 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATTGAAAACGAGTCGTC
449 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
39349 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
39414 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* * * * * * * *
39479 CGCATCCCATCTCTCTAGTCTGCATAGTG-C-TCGCCCGCCCGCCTGCTAGTTTCGTCGGTTGGC
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGC
* * *
39542 TTAGGCTTACGGAGTTCATTCCCAGTCTAAGATTAAACCGGATGAAAGGTTGCGGCAGCAGGATT
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATGAAAGGTTGCGACAGCAGGATT
* *
39607 GGCAGCACGCATAGGGGGACGCGGTCGATCCCCAACTTTCGCATCTCGCCCCTCTGGCCGGCTGA
774 GGCAGCACG-ATAGGGGGACGCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
39672 GCGCCGGCACGCTCGTTTCATGGGTTGACTTAGGCAAATGGAGTTTATTCCTAGTCTAAGA
838 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAAA--GAGTTCATTCCCAGTCTAAGA
* * * * *
39733 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGTGGCAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGTCTGCGGCAGCACATGCAAGGCT
* * * **
39798 CGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTTGGAGAAC
66 CGGGCATGCGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
** ** * * * *
39863 CTGACCGGTGGCATTGGGGTTCCGGTGATTGGGGGGGCCG-GAGGGGTGTGCGCACATGATGTAT
131 CTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGTCCGAG-GGGGTGTGCACACATGAT-TGT
* * **
39927 G-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCCGCAAACCTCGAGAACTCAC
193 GCGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ** * * * *
39991 ACCCCTTCAAAGAGCATTTTAGATTTTAGGGGTTTGCTGCCAGTAGCCACTAAAGTGTCTCAAAT
258 ACCCCTTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTAAAAT
* * *
40056 GGGGACACTTTTCTCAATTGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTCTTT-
323 GGGGACACTTTTTTCAA-TGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTG
* * *
40120 TGCATAACAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTTC-AAAAA
387 TGCATGACAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
40184 TATTTTAAAAAATCCCGAACAGCAAATAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCT
451 -ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
40249 TGCCATGAAATTTCATGCGAAGGCTTAAGGGACCATTGTATGAATTTAC-AGCCCACAAAAATGG
515 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CCATAAAAATGG
40313 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
*
40378 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGACCGCCCGCCCGCCCGCTCGTTTCGTCAGTTG
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG-CCGCCCGCCCGCCTGCTCGTTTCGTCAGTTG
* * ** * *
40443 GCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCGGACCGGAATG-AGGGTTGCGATAGCAGG
707 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGG-ATGAAAGGTTGCGACAGCAGG
* *
40507 ATTGAG-AGCACG-TAGAGGGGAC-C-TTGCGATCCCCAGCTTGCGCATGCCCGCCCCTCTGG-C
771 ATTG-GCAGCACGATAG-GGGGACGCGGT-CGATCCCCAACTTGCGCAT-CCCGCCCCTCTGGCC
* *
40567 GGCTGAGCGCCCTCACGCTCGTTTTCGTGGGTTGAACTT-GGCTACAA-AGTTCATTCCCAGTCT
832 GGCTGAGCGCCCGCACGCTCG-TTTCATGGGTTG-ACTTAGGC-A-AAGAGTTCATTCCCAGTCT
*
40630 AAGCC
893 AAG-A
* * * * *
40635 ATA-TGAGTTCATT-CCA-TCTAA-CTGCAGACC-AATCGGAGGGTCTGCCGGTAGCACGTGCAA
1 ATACGGAGTTCATTCCCAGTCTAAGAT-CAGACCGAA-CCGA-GGTCTG-CGGCAGCACATGCAA
*** * *
40695 GGCTC-GGCATGCGCTGGTGCCCTGCATTTCTCTTCGTTGGGGCACCATTTG-CGGAGCTTC-CC
62 GGCTCGGGCATGCGCTGGTG-CC-GCATTTCTCTTCACCGGGGCACCA-TCGCCGGAGCATCGCC
40757 GGAG-A-CTGA-CGACGGCATTGGGGTTCCGACGATCGGGGGTCCGAGTGGGGTGTGCACACCAT
124 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCGAG-GGGGTGTGCACA-CAT
* *
40819 GATTGTGCGTGGGTGC-GGTACTT-GCCTTTATATTGG--CCCTAT-CCTCATCAAA-CTCAAGA
187 GATTGTGCGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
40878 A-TCTACA-TCCTTC-AAGAGCATTTGAGATTTTACAGGTTTGTTGGCAAGTAAGCAATTAAAGT
252 ACTC-ACACCCCTTCAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCAAGT-AGCAATTAAAGT
40940 GTCTAAAATGGGGACA-TTTTTTCACATGGTCACAAAATCCTTGTAACACTATAGAG-TTTT-GC
314 GTCTAAAATGGGGACACTTTTTTCA-ATGGTCACAAAAT-CTTGT-ACACT-TAGAGTTTTTAGC
* * *
41002 TGAATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAAC
375 TGAA-TTTTTTTGTGCATGAC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* **
41067 TCCTTCCGAAAAAATTTCAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAA
438 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAA
41132 AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
503 AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
41197 CATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
568 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
41262 TCCACAGCTTGCGCATCCTGTCTCTCTGGCCGACGTTGCGTCGACCGTCCGCCCGCCCGCCTGCT
633 TCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCG-T-AGT-G-CCG-CCGCCCGCCCGCCTGCT
*
41327 CGTTTCGTCAGTTGGCTTA-GTATACGGAGTTCATTCCCAGTCTAAG
693 CGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
41373 CATACGAAGT
Statistics
Matches: 1418, Mismatches: 171, Indels: 104
0.84 0.10 0.06
Matches are distributed among these distances:
891 25 0.02
892 31 0.02
893 47 0.03
894 22 0.02
895 258 0.18
896 10 0.01
897 47 0.03
898 95 0.07
899 422 0.30
900 206 0.15
901 90 0.06
902 64 0.05
903 95 0.07
904 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGTCTGCGGCAGCACATGCAAGGCT
CGGGCATGCGCTGGTGCCGCATTTCTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTCCGAGGGGGTGTGCACACATGATTGTGCG
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCA
TGACAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCGCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATGAAAGGTTGCGACAGCAGGATTGGCAGCA
CGATAGGGGGACGCGGTCGATCCCCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCAAAGAGTTCATTCCCAGTCTAAGA
Found at i:42232 original size:26 final size:26
Alignment explanation
Indices: 42196--42248 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
42186 GTTGACTTAG
42196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
42222 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
42248 G
1 G
42249 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:42960 original size:26 final size:26
Alignment explanation
Indices: 42930--42980 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
42920 TGGCTTAGGT
*
42930 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
42956 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
42981 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:43578 original size:733 final size:724
Alignment explanation
Indices: 42172--43679 Score: 2179
Period size: 733 Copynumber: 2.1 Consensus size: 724
42162 AGTGCCCTCA
* * *
42172 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
* *
42237 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTAGGGTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTAGGGTCGGGCATGTGCTG
* * * * *
42302 GTGCCGCATTTCTCTTCGCCGGGGCACCATTGCCGGAGCATTCTGGAGAACCTGATCGATGGCAT
131 GTGCCGCATTTCTCTTCGCCGGGACACCATCGCCGGAGCATACTGGAGAACCGGATCGATCGCAT
* ** *
42367 TGGGGTTCCGAGGGGGTGTGCACACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGG
196 CGGGGGGCCGAGGGGGTGTG-ACACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGG
* ** * * * *
42432 CCCCCTATCCCTCATCAAACCTCAAGATGTCACACCTCCTTCAAGAGCATTTGAGATTTTACAGG
260 CCCCCTATCCCTCATCAAACCTCAACAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAG
* **
42497 TTTGTTGGCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
325 TTTGCTACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
42562 TATACATTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTC
390 TATACATTCAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTC
42627 TACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCCCAAACCGCAAAAAGTTT
455 TACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCCCAAACCGCAAAAAGTTT
** *
42692 TGAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
520 CAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
42757 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGACTAA
585 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGACTAA
* * * *
42822 ACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTTGCGCCAA
650 ACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCG-C--
42887 TCGTTCGCCCGCCCGCC
712 -C---CGCCCGCCCGCC
* * *
42904 TGCTCATTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
*
42969 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCT-GGGCTCGGGCATGTGTT
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTAGGG-TCGGGCATGTGCT
* * * * * * * * *
43033 GGTGTCGCATTTTTCTTCGCTGGGAC-CCATCGTCGGAGAACCTGACTGGTGGCATCGGGGTTCT
130 GGTGCCGCATTTCTCTTCGCCGGGACACCATCGCCGGAG--CAT-ACTGG-AG-AAC-CGGATC-
43097 GA-CG-ATCGGAGGGGCCG-GGGGGTGTG-CACATGATGTGCGATGGGTGGTGGTACTTGGCCCT
188 GATCGCATCGG-GGGGCCGAGGGGGTGTGACACATGATGTGCGATGGGTGGTGGTACTTGGCCCT
* *
43158 TATATTGGCCCCCTATCCCTTATCAAACCTCGACAACTCACACCCCCTTAAAAAGCATTTGAGAT
252 TATATTGGCCCCCTATCCCTCATCAAACCTCAACAACTCACACCCCCTTAAAAAGCATTTGAGAT
* *
43223 TTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
317 TTTACAAGTTTGCTACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA
* * * * *
43288 CAAAATCTTGTGCACTTCA-AGTTTTTAGCTGAATTTTTTTGTGCATTCC-AACAAAAATACGAG
382 CAAAATCTTATACA-TTCAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAG
* * * *
43351 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT
446 GATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCCCAAACCGC
*
43416 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
511 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGG
*
43481 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAGGA
576 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGA
*
43546 TGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
641 TGTGACTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
*
43611 TAGTGCCCGCCCGCCCGCC
706 TAGCGCCCGCCCGCCCGCC
* * * *
43630 CGCTCATTTCGTCGGTTGGCTTAGGCATGCAGAGCTCATT-CTAGTCTAAG
1 CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
43680 ATCGGACCAG
Statistics
Matches: 695, Mismatches: 71, Indels: 27
0.88 0.09 0.03
Matches are distributed among these distances:
725 9 0.01
726 46 0.07
729 1 0.00
731 13 0.02
732 139 0.20
733 262 0.38
734 195 0.28
735 4 0.01
736 15 0.02
737 9 0.01
738 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (724 bp):
CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTAGGGTCGGGCATGTGCTG
GTGCCGCATTTCTCTTCGCCGGGACACCATCGCCGGAGCATACTGGAGAACCGGATCGATCGCAT
CGGGGGGCCGAGGGGGTGTGACACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCAACAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAAGT
TTGCTACCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
ATACATTCAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCT
ACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTCAAAAAATCCCAAACCGCAAAAAGTTTC
AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGACTAAA
CCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGC
CCGCCCGCC
Found at i:43832 original size:26 final size:26
Alignment explanation
Indices: 43796--43848 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
43786 GTTGACTTAG
* *
43796 GCATACGGAGTTCATTCTCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
43822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
43848 G
1 G
43849 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:45122 original size:882 final size:878
Alignment explanation
Indices: 42917--45359 Score: 3635
Period size: 883 Copynumber: 2.8 Consensus size: 878
42907 TCATTTCATC
* * *
42917 GGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
42982 TCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCGCATTTTT
66 TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
43047 CTTCGCTGGG----A---CC---CATCGTCGGAGAACCTGACTGGTGGCATCGGGGTTCTGACGA
131 CTTCCCGGGGCACCATCGCCGAGCATCGTCGGAGAACCTGACTGGTGGCATTGGGGTTCAGACGA
*
43102 TCGGAGGGGCCGGGGGGTGT--GCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTG
196 TC-GAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
43165 GCCCCCTATCCCTTATCAAACCTCGACAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAA
260 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
*
43230 GTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
325 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * *
43295 TTGTGCACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATTCCAACAAAAATACGAGGATCACGTC
390 TTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
*
43360 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
455 TACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
43425 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
519 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
43490 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAGGATGTGCCTAA
584 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* * * *
43555 ACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
649 ACCCACCTACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTCCCTAGCCGACGTAGTGCCCG
* * *
43620 CCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATGCAGAGCTCATTCTAGTCTAAGATCGG
714 CCCACCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACAGAGCTCATTCTAGTCTAAGATCGG
* * * ** * *
43685 ACCAGACCAAGGGTTGCGGTAGTAGGATTGGCAGCACGTAGAGGGGGACTTGCTCATCCCGCCCC
779 ACCAGACCAAGGGTTGCAGCAGCAGGATCAGCAGCACGTAGAGGGGGACTTACGCATCCCGCCCC
43750 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTA
844 TCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTA
* *
43785 GGTTGACTTAGGCATACGGAGTTCATTCTCATTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * **
43850 TCAGACCGGACTGAGGGTTGCTGTAGCAGATGCTAAGCTCGGGCATGTGCTGGTGCCGCATTTTT
66 TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
43915 CTTCACCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGA-TCGGTGGCATTGGGGTTCCGA
131 CTTC-CCGGGGCACCATCG-CCGAGCATCGTCGGAGAACCTGACT-GGTGGCATTGGGGTTCAGA
* * * *
43979 CGATCGGGGGGCCCGAGGGGGTGTGCGCACATGATGCGCAATGGGTGCTGGGACTTGGCCCTTAT
193 CGATCGAGGGG-CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
** * *
44044 ATTGGCCCCCTATCCCTCATCAAACCTAAAGAACTCACACCCCCTTAAAGAGCATTTGATATCTT
256 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
44109 ATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
321 ACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
44174 AATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTTGTGCATGCCAACAAAAATACAAGGATC
386 AATCTTGTACACTTCGAGTTTTTAGCTGAATTG-TTTTGTGCATGCCAACAAAAATACAAGGATC
* *
44238 ATGTCTACCAAGTTTAGGGCCAAAACTCCTCTCGAAAATATTTTAAAAAATCCTGAACCGTAAAA
450 ATGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTAAAAAATCCTGAACCGTAAAA
* * * * * *
44303 AGTTTGAAAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGATTA
514 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
44368 AGGGACCATTGTATGAATTTACAAGCTAT-AAAATGGCATTGGCACACAGAAATATGAAGATGTG
579 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* * *
44432 TCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTCCCTAGTCGGCGTAGT
644 CCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTCCCTAGCCGACGTAGT
* * * *
44497 GCCCGCCCACCTGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
709 GCCCGCCCACCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACAGAGCTCATT-CTAGTCTAA
* *
44562 GATCGGA-CAGGACCACGGGTTGCAGCAGCAGGATCAGTAGCACGTAGAGGGGGACTTACGCATC
773 GATCGGACCA-GACCAAGGGTTGCAGCAGCAGGATCAGCAGCACGTAGAGGGGGACTTACGCATC
* * *
44626 CCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTG
837 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTA
** *
44668 GGTTGACTTAGGCATATTGAGTTCATTCCCAGTCTAAGCCTACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
44733 TCGGACCAGACCGAGGGATGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
66 TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
44798 CTTTCTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACTTGACTGATGGCATTAGGGTTTCAG-
131 C-TTCCCGGGGCACCATCGCC-GAGCATCGTCGGAGAACCTGACTGGTGGCATT-GGGGTTCAGA
44862 CGATCGACGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
193 CGATCGA-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
44927 TTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
257 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
44992 CAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
322 CAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
45057 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAAGCCAAGAAAAATACAAGGATCAT
387 ATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* ** * *
45122 GTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTAAAAAAAATCCTGAACCGCAACAAG
452 GTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAG
* *
45187 TTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTGAAG
516 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * *
45252 GGACAATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACTCATAAATATGAAGATGTGCC
581 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* *
45317 TAAACCCACCTAGCACCCTATCGATTG-ACGGCTTACGCATCCC
646 TAAACCCACCTACCACCCTATCGA-TGCACGGCTTGCGCATCCC
45360 ATCACTCTGG
Statistics
Matches: 1407, Mismatches: 138, Indels: 45
0.88 0.09 0.03
Matches are distributed among these distances:
868 120 0.09
869 4 0.00
873 1 0.00
877 1 0.00
879 6 0.00
880 42 0.03
881 8 0.01
882 510 0.36
883 697 0.50
884 18 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (878 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
CTTCCCGGGGCACCATCGCCGAGCATCGTCGGAGAACCTGACTGGTGGCATTGGGGTTCAGACGA
TCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTCCCTAGCCGACGTAGTGCCCGCC
CACCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATACAGAGCTCATTCTAGTCTAAGATCGGAC
CAGACCAAGGGTTGCAGCAGCAGGATCAGCAGCACGTAGAGGGGGACTTACGCATCCCGCCCCTC
TGGCCGACTGAGCGCCCGCACGCTCGTTTCGTA
Found at i:45863 original size:12 final size:12
Alignment explanation
Indices: 45846--45872 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45836 CGACGTAGTG
45846 CCCGCTCGTCCA
1 CCCGCTCGTCCA
45858 CCCGCTCGTCCA
1 CCCGCTCGTCCA
45870 CCC
1 CCC
45873 ACTCATTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.63, G:0.15, T:0.15
Consensus pattern (12 bp):
CCCGCTCGTCCA
Found at i:46799 original size:26 final size:26
Alignment explanation
Indices: 46763--46815 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
46753 GTTGACTTAG
46763 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
46789 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
46815 G
1 G
46816 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:48388 original size:26 final size:26
Alignment explanation
Indices: 48352--48404 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
48342 GTTGACTTAG
48352 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
48378 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
48404 G
1 G
48405 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.