Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 35 of 105
Found at i:6769718 original size:28 final size:28
Alignment explanation
Indices: 6769678--6769732 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
6769668 TAAGATTTTC
*
6769678 TTAGGGGCCAGCTAAACTGAGCTTAAAA
1 TTAGGGACCAGCTAAACTGAGCTTAAAA
* *
6769706 TTAGGGACCAGCTACACTGGGCTTAAA
1 TTAGGGACCAGCTAAACTGAGCTTAAA
6769733 TCTTATGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (28 bp):
TTAGGGACCAGCTAAACTGAGCTTAAAA
Found at i:6770000 original size:32 final size:32
Alignment explanation
Indices: 6769964--6770034 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
6769954 GGCTTAACTT
*
6769964 TTCATTGGTACCAATTAA-TCTGGGCTTAAAAC
1 TTCATTGGTACCAAATAATTC-GGGCTTAAAAC
* *
6769996 TTCATTAGTGCCAAATAATTCGGGCTTAAAAC
1 TTCATTGGTACCAAATAATTCGGGCTTAAAAC
6770028 TTCATTG
1 TTCATTG
6770035 ATGTCAGATC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 32 0.94
33 2 0.06
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (32 bp):
TTCATTGGTACCAAATAATTCGGGCTTAAAAC
Found at i:6770988 original size:16 final size:15
Alignment explanation
Indices: 6770942--6770991 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
6770932 CACTCATTTA
*
6770942 TTTCTTTTCTTTTTC
1 TTTCTTTTATTTTTC
*
6770957 CTTCTTTTATTCTTTC
1 TTTCTTTTATT-TTTC
6770973 TTTCCTTTTATTTTTC
1 TTT-CTTTTATTTTTC
6770989 TTT
1 TTT
6770992 TTTCTTTTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
15 9 0.30
16 13 0.43
17 8 0.27
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTTTATTTTTC
Found at i:6770989 original size:20 final size:18
Alignment explanation
Indices: 6770951--6770999 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
6770941 ATTTCTTTTC
6770951 TTTTTCCTTCTTTTATTCT
1 TTTTTCCTT-TTTTATTCT
*
6770970 TTCTTTCCTTTTATTTTTCT
1 TT-TTTCCTTTT-TTATTCT
6770990 TTTTT-CTTTT
1 TTTTTCCTTTT
6771000 GCATTCTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 5 0.19
19 7 0.26
20 15 0.56
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTCCTTTTTTATTCT
Found at i:6775506 original size:19 final size:17
Alignment explanation
Indices: 6775482--6775526 Score: 63
Period size: 19 Copynumber: 2.5 Consensus size: 17
6775472 TCCATGAGAA
6775482 CTTTTTTTTCTTTGCCTTT
1 CTTTTTTTTCTTT--CTTT
*
6775501 CTTTTTTTTCTTTTTTT
1 CTTTTTTTTCTTTCTTT
6775518 CTTTTTTTT
1 CTTTTTTTT
6775527 TCAATGACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 12 0.48
19 13 0.52
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (17 bp):
CTTTTTTTTCTTTCTTT
Found at i:6775510 original size:9 final size:9
Alignment explanation
Indices: 6775482--6775526 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
6775472 TCCATGAGAA
6775482 CTTTTTTTT
1 CTTTTTTTT
**
6775491 CTTTGCCTTT
1 CTTT-TTTTT
6775501 CTTTTTTTT
1 CTTTTTTTT
6775510 C-TTTTTTT
1 CTTTTTTTT
6775518 CTTTTTTTT
1 CTTTTTTTT
6775527 TCAATGACTG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
8 8 0.27
9 15 0.50
10 7 0.23
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:6777493 original size:35 final size:35
Alignment explanation
Indices: 6777485--6777570 Score: 145
Period size: 35 Copynumber: 2.5 Consensus size: 35
6777475 TAAGAGCTTT
6777485 GATTTTAGGGTTTAAATTTTGGGGTTTAAGGTTTG
1 GATTTTAGGGTTTAAATTTTGGGGTTTAAGGTTTG
* **
6777520 GATTTTAGGGTTTAAATTTTGGTGTTTAAAATTTG
1 GATTTTAGGGTTTAAATTTTGGGGTTTAAGGTTTG
6777555 GATTTTAGGGTTTAAA
1 GATTTTAGGGTTTAAA
6777571 GGATTTATGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (35 bp):
GATTTTAGGGTTTAAATTTTGGGGTTTAAGGTTTG
Found at i:6777512 original size:21 final size:21
Alignment explanation
Indices: 6777488--6777534 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
6777478 GAGCTTTGAT
* *
6777488 TTTAGGGTTTAAATTTTGGGG
1 TTTAAGGTTTAAATTTTAGGG
**
6777509 TTTAAGGTTTGGATTTTAGGG
1 TTTAAGGTTTAAATTTTAGGG
6777530 TTTAA
1 TTTAA
6777535 ATTTTGGTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (21 bp):
TTTAAGGTTTAAATTTTAGGG
Found at i:6777540 original size:21 final size:21
Alignment explanation
Indices: 6777500--6777570 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 21
6777490 TAGGGTTTAA
* **
6777500 ATTTTGGGGTTTAAGGTTTGG
1 ATTTTAGGGTTTAAAATTTGG
*
6777521 ATTTTAGGGTTTAAATTTTGG
1 ATTTTAGGGTTTAAAATTTGG
6777542 ----T---GTTTAAAATTTGG
1 ATTTTAGGGTTTAAAATTTGG
6777556 ATTTTAGGGTTTAAA
1 ATTTTAGGGTTTAAA
6777571 GGATTTATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
14 12 0.31
17 1 0.03
18 1 0.03
21 25 0.64
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (21 bp):
ATTTTAGGGTTTAAAATTTGG
Found at i:6777617 original size:28 final size:28
Alignment explanation
Indices: 6777586--6777653 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
6777576 TATGGTTTCA
6777586 ATTTTAGGATTTGAAGTTTGAA-GTTTTG
1 ATTTTAGGATTTGAAGTTT-AAGGTTTTG
* *
6777614 ATTTTAGGGTTTGAGGTTTAAGGTTTTG
1 ATTTTAGGATTTGAAGTTTAAGGTTTTG
6777642 ATTTTAGGATTT
1 ATTTTAGGATTT
6777654 AGGGGATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.06
28 34 0.94
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.51
Consensus pattern (28 bp):
ATTTTAGGATTTGAAGTTTAAGGTTTTG
Found at i:6777724 original size:37 final size:36
Alignment explanation
Indices: 6777674--6777743 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
6777664 CGGTTTAGTT
* *
6777674 TTTTAAGGTTTATGGTTTTTTATTTTTGGATTTTGGA
1 TTTTAAGGTTTATGG-GTTTAATTTTTGGATTTTGGA
*
6777711 TTTTAGGGTTTATGGGTTTAATTTTTGGATTTT
1 TTTTAAGGTTTATGGGTTTAATTTTTGGATTTT
6777744 AAAGACGTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 16 0.53
37 14 0.47
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.61
Consensus pattern (36 bp):
TTTTAAGGTTTATGGGTTTAATTTTTGGATTTTGGA
Found at i:6777870 original size:3 final size:3
Alignment explanation
Indices: 6777864--6777914 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
6777854 TTATGAAAAT
*
6777864 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6777912 TTA
1 TTA
6777915 ACTTTTTTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:6778027 original size:3 final size:3
Alignment explanation
Indices: 6778009--6778074 Score: 73
Period size: 3 Copynumber: 22.3 Consensus size: 3
6777999 ATAAAAAAAA
* * * *
6778009 ATT ATT -TT ATT CTT ATT ATC ATT AATT TTT A-G ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT
6778053 ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
6778075 AGCATTTTAG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
2 3 0.06
3 46 0.88
4 3 0.06
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:6781095 original size:18 final size:18
Alignment explanation
Indices: 6781068--6781102 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6781058 AAAGTTACTT
6781068 TATTTAATAATTTTTTAA
1 TATTTAATAATTTTTTAA
*
6781086 TATTTTATAATTTTTTA
1 TATTTAATAATTTTTTA
6781103 TTTAAGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTAATAATTTTTTAA
Found at i:6781442 original size:5 final size:6
Alignment explanation
Indices: 6781427--6781451 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6781417 AAAATTAACA
6781427 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
6781452 GCAATATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:6782740 original size:31 final size:29
Alignment explanation
Indices: 6782705--6782776 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
6782695 TGAATGATCG
*
6782705 TTAAATTATAATGAAATATTCAATGTGATAT
1 TTAAATTATAA--AAATATTCAATATGATAT
* * *
6782736 TTAAATTTTAAAAATATTTACTATGATAT
1 TTAAATTATAAAAATATTCAATATGATAT
*
6782765 TTAAATTTTAAA
1 TTAAATTATAAA
6782777 TCTGTTAACT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 27 0.73
31 10 0.27
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (29 bp):
TTAAATTATAAAAATATTCAATATGATAT
Found at i:6782750 original size:29 final size:29
Alignment explanation
Indices: 6782718--6782776 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
6782708 AATTATAATG
*
6782718 AAATATTCAATGTGATATTTAAATTTTAA
1 AAATATTCAATATGATATTTAAATTTTAA
* *
6782747 AAATATTTACTATGATATTTAAATTTTAA
1 AAATATTCAATATGATATTTAAATTTTAA
6782776 A
1 A
6782777 TCTGTTAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (29 bp):
AAATATTCAATATGATATTTAAATTTTAA
Found at i:6784281 original size:14 final size:14
Alignment explanation
Indices: 6784264--6784313 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
6784254 AATATTAAAA
6784264 TATTAAAAATTATT
1 TATTAAAAATTATT
*
6784278 TATTATTAAATTA--
1 TATTA-AAAATTATT
6784291 TATT-AAAATTATT
1 TATTAAAAATTATT
6784304 ATATTAAAAA
1 -TATTAAAAA
6784314 ATAATTATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
11 6 0.21
13 4 0.14
14 9 0.31
15 10 0.34
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TATTAAAAATTATT
Found at i:6784285 original size:25 final size:22
Alignment explanation
Indices: 6784255--6784312 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 22
6784245 ATTAATATAA
6784255 ATATTAAAATATTAAAAATTATTT
1 ATATTAAAATATT-AAAATTA-TT
6784279 ATTATTAAATTATATTAAAATTATT
1 A-TATTAAA--ATATTAAAATTATT
6784304 ATATTAAAA
1 ATATTAAAA
6784313 AATAATTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
22 1 0.03
24 8 0.26
25 10 0.32
26 7 0.23
27 5 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTAAAATATTAAAATTATT
Found at i:6784293 original size:27 final size:25
Alignment explanation
Indices: 6784256--6784309 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 25
6784246 TTAATATAAA
6784256 TATTAAAATATTAAAAATTATT-TAT
1 TATTAAAATATT-AAAATTATTATAT
6784281 TATTAAATTATATTAAAATTATTATAT
1 TATTAAA--ATATTAAAATTATTATAT
6784308 TA
1 TA
6784310 AAAAATAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 7 0.27
26 9 0.35
27 10 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TATTAAAATATTAAAATTATTATAT
Found at i:6784314 original size:16 final size:14
Alignment explanation
Indices: 6784286--6784324 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
6784276 TTTATTATTA
6784286 AATTATATTAAAAT
1 AATTATATTAAAAT
*
6784300 TATTATATTAAAAAAT
1 AATTATATT--AAAAT
6784316 AATTATATT
1 AATTATATT
6784325 TTGATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 8 0.38
16 13 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AATTATATTAAAAT
Found at i:6784315 original size:27 final size:27
Alignment explanation
Indices: 6784263--6784315 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
6784253 AAATATTAAA
**
6784263 ATATTAAAAATTATTTATTATTAAATT
1 ATATTAAAAATTATTTATTAAAAAATT
6784290 ATATT-AAAATTATTATATTAAAAAAT
1 ATATTAAAAATTATT-TATTAAAAAAT
6784316 AATTATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.39
27 14 0.61
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
ATATTAAAAATTATTTATTAAAAAATT
Found at i:6784429 original size:18 final size:17
Alignment explanation
Indices: 6784390--6784436 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
6784380 AAAATTATTG
*
6784390 ATTATTT-TTGATATAT
1 ATTATTTATTAATATAT
6784406 -TTATTTATTAATATAAT
1 ATTATTTATTAATAT-AT
*
6784423 ATTATTTATAAATA
1 ATTATTTATTAATA
6784437 AAATTATACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 6 0.23
16 6 0.23
17 2 0.08
18 12 0.46
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTATTTATTAATATAT
Found at i:6785320 original size:14 final size:14
Alignment explanation
Indices: 6785301--6785328 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6785291 GATGTTTATC
6785301 AATTTTTAAAATTT
1 AATTTTTAAAATTT
6785315 AATTTTTAAAATTT
1 AATTTTTAAAATTT
6785329 TTATAGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATTTTTAAAATTT
Found at i:6785421 original size:21 final size:22
Alignment explanation
Indices: 6785397--6785441 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
6785387 TACTTTAGTT
*
6785397 TATAAAATCTAATAA-AATATA
1 TATAAAAACTAATAACAATATA
6785418 TATAAAAACTAATAACAATATA
1 TATAAAAACTAATAACAATATA
6785440 TA
1 TA
6785442 ATTTGTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (22 bp):
TATAAAAACTAATAACAATATA
Found at i:6785801 original size:16 final size:17
Alignment explanation
Indices: 6785780--6785818 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
6785770 AAATTTTGTT
*
6785780 AATATTT-TTTACTAAA
1 AATATTTATTTAATAAA
6785796 AATATTTATTTAATAAA
1 AATATTTATTTAATAAA
*
6785813 TATATT
1 AATATT
6785819 AAAATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATTTATTTAATAAA
Found at i:6785886 original size:6 final size:6
Alignment explanation
Indices: 6785871--6785904 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
6785861 GTGATTAAAT
*
6785871 TTTTAC TTTTAA TTTTAA TTTTAA TTTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
6785905 TATTCACTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:6789778 original size:31 final size:31
Alignment explanation
Indices: 6789714--6789792 Score: 83
Period size: 33 Copynumber: 2.6 Consensus size: 31
6789704 GGTCTCATTT
6789714 AAATATAACAATTTATATATTCATATCAAATA
1 AAATATAACAATTTATATATTCATAT-AAATA
* * *
6789746 AAATATTAATAATTTATATATTTATAT-TATA
1 AAATA-TAACAATTTATATATTCATATAAATA
*
6789777 AAA-ATAA-AATATATAT
1 AAATATAACAATTTATAT
6789793 TTTATTTGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
28 8 0.19
29 3 0.07
30 1 0.02
31 6 0.14
32 5 0.12
33 19 0.45
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (31 bp):
AAATATAACAATTTATATATTCATATAAATA
Found at i:6796919 original size:24 final size:24
Alignment explanation
Indices: 6796888--6797079 Score: 71
Period size: 24 Copynumber: 8.1 Consensus size: 24
6796878 AATTATTTGC
6796888 TTATATTTGTTTGCATGATTAATA
1 TTATATTTGTTTGCATGATTAATA
** * *
6796912 TTATATTTGCATG-ATAATTTATTTGCTA
1 TTATATTTGTTTGCATGA-TTA----ATA
*
6796940 ATATATTTGTTTGCATGATT-A-A
1 TTATATTTGTTTGCATGATTAATA
* *
6796962 -TATATTTATTTGTATGATT--TA
1 TTATATTTGTTTGCATGATTAATA
* * *
6796983 TTA-ATATGTTTGAATGATTATTA
1 TTATATTTGTTTGCATGATTAATA
* * **
6797006 ATATATTTATTTATATGATTACAT-
1 TTATATTTGTTTGCATGATTA-ATA
* * *
6797030 TTA-ATTTGATTGCATCATTATTA
1 TTATATTTGTTTGCATGATTAATA
* *
6797053 ATAT-TATTATTTGCATGATTATATA
1 TTATAT-TTGTTTGCATGATTA-ATA
6797078 TT
1 TT
6797080 TAATTGCATG
Statistics
Matches: 119, Mismatches: 33, Indels: 31
0.65 0.18 0.17
Matches are distributed among these distances:
21 31 0.26
22 4 0.03
23 22 0.18
24 41 0.34
25 4 0.03
28 14 0.12
29 3 0.03
ACGTcount: A:0.32, C:0.04, G:0.10, T:0.54
Consensus pattern (24 bp):
TTATATTTGTTTGCATGATTAATA
Found at i:6796922 original size:20 final size:20
Alignment explanation
Indices: 6796897--6797013 Score: 70
Period size: 20 Copynumber: 6.2 Consensus size: 20
6796887 CTTATATTTG
6796897 TTTGCATGATTAATATTATA
1 TTTGCATGATTAATATTATA
6796917 TTTGCATGA-T-A-ATT-TA
1 TTTGCATGATTAATATTATA
* *
6796933 TTTGC-T-AAT-ATATT-TG
1 TTTGCATGATTAATATTATA
*
6796949 TTTGCATGATTAATATATTTA
1 TTTGCATGATTAATAT-TATA
* * * *
6796970 TTTGTATGATTTATTAATATG
1 TTTGCATGA-TTAATATTATA
* * *
6796991 TTTGAATGATTATTAATATA
1 TTTGCATGATTAATATTATA
6797011 TTT
1 TTT
6797014 ATTTATATGA
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
14 1 0.01
15 3 0.04
16 16 0.20
17 4 0.05
18 3 0.04
19 5 0.06
20 23 0.29
21 19 0.24
22 5 0.06
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.54
Consensus pattern (20 bp):
TTTGCATGATTAATATTATA
Found at i:6796951 original size:52 final size:49
Alignment explanation
Indices: 6796859--6796979 Score: 174
Period size: 52 Copynumber: 2.4 Consensus size: 49
6796849 TTTTACTGAT
6796859 TTAATATTATATTTGCAT--TAATTATTTGCTTATATTTGTTTGCATGA
1 TTAATATTATATTTGCATGATAATTATTTGCTTATATTTGTTTGCATGA
6796906 TTAATATTATATTTGCATGATAATTTATTTGCTAATATATTTGTTTGCATGA
1 TTAATATTATATTTGCATGATAA-TTATTTGCT--TATATTTGTTTGCATGA
* *
6796958 TTAATATATTTATTTGTATGAT
1 TTAATAT-TATATTTGCATGAT
6796980 TTATTAATAT
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
47 18 0.27
49 3 0.05
50 9 0.14
52 24 0.36
53 12 0.18
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.55
Consensus pattern (49 bp):
TTAATATTATATTTGCATGATAATTATTTGCTTATATTTGTTTGCATGA
Found at i:6796968 original size:21 final size:21
Alignment explanation
Indices: 6796889--6796935 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
6796879 ATTATTTGCT
*
6796889 TATATTTGTTTGCATGATTAA
1 TATATTTATTTGCATGATTAA
*
6796910 TAT-TATATTTGCATGA-TAA
1 TATATTTATTTGCATGATTAA
*
6796929 TTTATTT
1 TATATTT
6796936 GCTAATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
19 5 0.24
20 13 0.62
21 3 0.14
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.55
Consensus pattern (21 bp):
TATATTTATTTGCATGATTAA
Found at i:6796978 original size:21 final size:21
Alignment explanation
Indices: 6796938--6797026 Score: 72
Period size: 21 Copynumber: 4.1 Consensus size: 21
6796928 ATTTATTTGC
* *
6796938 TAATATATTTGTTTGCATGAT
1 TAATATATTTATTTGTATGAT
6796959 TAATATATTTATTTGTATGAT
1 TAATATATTTATTTGTATGAT
* * * *
6796980 TTAT-TAATATGTTTGAATGATTAT
1 TAATAT-ATTTATTTG--T-ATGAT
*
6797004 TAATATATTTATTTATATGAT
1 TAATATATTTATTTGTATGAT
6797025 TA
1 TA
6797027 CATTTAATTT
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
20 1 0.02
21 35 0.67
22 1 0.02
23 1 0.02
24 13 0.25
25 1 0.02
ACGTcount: A:0.34, C:0.01, G:0.10, T:0.55
Consensus pattern (21 bp):
TAATATATTTATTTGTATGAT
Found at i:6797014 original size:45 final size:47
Alignment explanation
Indices: 6796957--6797073 Score: 141
Period size: 47 Copynumber: 2.5 Consensus size: 47
6796947 TGTTTGCATG
* * *
6796957 ATTAATATATTTATTTGTATGATT-TA-TTAATATGTTTGAATGATT
1 ATTAATATATTTATTTGTATGATTACATTTAATATGATTGAATCATT
* * *
6797002 ATTAATATATTTATTTATATGATTACATTTAATTTGATTGCATCATT
1 ATTAATATATTTATTTGTATGATTACATTTAATATGATTGAATCATT
*
6797049 ATTAATAT-TATTATTTGCATGATTA
1 ATTAATATAT-TTATTTGTATGATTA
6797074 TATATTTAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 23 0.38
46 2 0.03
47 36 0.59
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.54
Consensus pattern (47 bp):
ATTAATATATTTATTTGTATGATTACATTTAATATGATTGAATCATT
Found at i:6797099 original size:32 final size:32
Alignment explanation
Indices: 6797063--6797202 Score: 129
Period size: 32 Copynumber: 4.4 Consensus size: 32
6797053 ATATTATTAT
* *
6797063 TTGCATGATTATATATTTAATTGCATGTCTAA
1 TTGCATGATTATATATTTAATTACATGTTTAA
* * ** * *
6797095 TTGCATGAGTAT-TAATTTATTTATTTGTGTGA
1 TTGCATGATTATAT-ATTTAATTACATGTTTAA
** * *
6797127 TTATATGATTATATATTTAATTGCATGTTTAT
1 TTGCATGATTATATATTTAATTACATGTTTAA
* * *
6797159 TTGCATGATCATATATTTAATTATATGTTTAT
1 TTGCATGATTATATATTTAATTACATGTTTAA
6797191 TTGCATGATTAT
1 TTGCATGATTAT
6797203 TAATATTAGT
Statistics
Matches: 83, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
31 1 0.01
32 81 0.98
33 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.13, T:0.52
Consensus pattern (32 bp):
TTGCATGATTATATATTTAATTACATGTTTAA
Found at i:6797177 original size:64 final size:62
Alignment explanation
Indices: 6797067--6797256 Score: 189
Period size: 64 Copynumber: 3.1 Consensus size: 62
6797057 TATTATTTGC
* *
6797067 ATGATTATATATTTAATTGCATGTCTAATTGCATGAGTATTAATTTATTTATTTGTGTGATTAT
1 ATGATTATATATTTAATTGCATGTTTATTTGCATGA-TATTAATTTATTTATTTGTGTGATT-T
* * *
6797131 ATGATTATATATTTAATTGCATGTTTATTTGCATGATCA-TATATTTAATTATATGT-TTATTT
1 ATGATTATATATTTAATTGCATGTTTATTTGCATGAT-ATTA-ATTTATTTATTTGTGTGATTT
* *
6797193 GCATGATTAT-TA-AT-ATT--A-GTTTTTTTGCATGATTATTAATTTATTTATTTGTGTGATTG
1 --ATGATTATATATTTAATTGCATGTTTATTTGCATGA-TATTAATTTATTTATTTGTGTGATT-
6797252 T
62 T
6797253 ATGA
1 ATGA
6797257 GTATTAATAT
Statistics
Matches: 108, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
58 30 0.28
59 8 0.07
60 1 0.01
61 3 0.03
62 2 0.02
63 9 0.08
64 55 0.51
ACGTcount: A:0.29, C:0.04, G:0.13, T:0.54
Consensus pattern (62 bp):
ATGATTATATATTTAATTGCATGTTTATTTGCATGATATTAATTTATTTATTTGTGTGATTT
Found at i:6797235 original size:58 final size:57
Alignment explanation
Indices: 6797153--6797278 Score: 141
Period size: 58 Copynumber: 2.2 Consensus size: 57
6797143 TTAATTGCAT
* *
6797153 GTTTATTTGCATGATCATATATTTAATTATATGT-TTATTTGCATGATTATTAATATTA
1 GTTTATTTGCATGATCATATATTTAATTATATGTGTGA-TTGCATGAGTATTAATA-TA
* * * * *
6797211 GTTTTTTTGCATGATTAT-TAATTTATTTATTTGTGTGATTGTATGAGTATTAATATA
1 GTTTATTTGCATGATCATAT-ATTTAATTATATGTGTGATTGCATGAGTATTAATATA
6797268 -TTTATTTGCAT
1 GTTTATTTGCAT
6797279 AGTTATTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
56 10 0.17
57 3 0.05
58 43 0.74
59 2 0.03
ACGTcount: A:0.28, C:0.04, G:0.13, T:0.56
Consensus pattern (57 bp):
GTTTATTTGCATGATCATATATTTAATTATATGTGTGATTGCATGAGTATTAATATA
Found at i:6797335 original size:19 final size:19
Alignment explanation
Indices: 6797298--6797336 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
6797288 TTATTTATTA
* *
6797298 TTATTGCATGATTTTATAT
1 TTATTGCATGATATGATAT
6797317 TTATTGCATGATATGATAT
1 TTATTGCATGATATGATAT
6797336 T
1 T
6797337 ATATGTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.13, T:0.54
Consensus pattern (19 bp):
TTATTGCATGATATGATAT
Found at i:6797345 original size:25 final size:24
Alignment explanation
Indices: 6797305--6797367 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
6797295 TTATTATTGC
*
6797305 ATGATTTTATATTTATTGCATGAT
1 ATGATATTATATTTATTGCATGAT
6797329 ATGATATTATATGTTATTGCATGAT
1 ATGATATTATAT-TTATTGCATGAT
* *
6797354 -TAAAATTATATTTA
1 ATGATATTATATTTA
6797368 AATGATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 3 0.09
24 20 0.57
25 12 0.34
ACGTcount: A:0.35, C:0.03, G:0.11, T:0.51
Consensus pattern (24 bp):
ATGATATTATATTTATTGCATGAT
Found at i:6797521 original size:20 final size:19
Alignment explanation
Indices: 6797487--6797596 Score: 94
Period size: 18 Copynumber: 6.0 Consensus size: 19
6797477 CATGAATGGC
6797487 TATTA-ATATATTTGCATGA
1 TATTATATATA-TTGCATGA
*
6797506 TATTTTATATTATTGCATGA
1 TATTATATA-TATTGCATGA
6797526 TA--ATATAT-TTGCATGA
1 TATTATATATATTGCATGA
*
6797542 TATTATATAT-TTACATGA
1 TATTATATATATTGCATGA
6797560 T-TGT-TAT-TATTGCATGA
1 TAT-TATATATATTGCATGA
6797577 TAATTA-ATATATTTGCATGA
1 T-ATTATATATA-TTGCATGA
6797597 CATTCTTGCA
Statistics
Matches: 76, Mismatches: 4, Indels: 21
0.75 0.04 0.21
Matches are distributed among these distances:
16 11 0.14
17 13 0.17
18 22 0.29
19 7 0.09
20 21 0.28
21 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (19 bp):
TATTATATATATTGCATGA
Found at i:6797697 original size:25 final size:24
Alignment explanation
Indices: 6797652--6797701 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
6797642 AGATGATATT
6797652 TGGTATGATTTATAATATATTTGCA
1 TGGTATGATTTATAATATA-TTGCA
* *
6797677 TGGTATTATTTGAT-ATTTATTGCA
1 TGGTATGATTT-ATAATATATTGCA
6797701 T
1 T
6797702 AATTGCTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 6 0.27
25 14 0.64
26 2 0.09
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.52
Consensus pattern (24 bp):
TGGTATGATTTATAATATATTGCA
Found at i:6799568 original size:4 final size:4
Alignment explanation
Indices: 6799554--6799661 Score: 85
Period size: 4 Copynumber: 26.5 Consensus size: 4
6799544 GTATTTGTAT
* *
6799554 TTTA TTTTA TTTA TTTA -TTA -TTA TTTA TTTA TTTA TTAATA TATA TTTG
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA
** * * * * *
6799603 TATTA TTTA TCAA TTAA TATA TTTA TTTA TTTA TCTA TTAA TATA TTTA
1 T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
6799652 TTTA TTTA TT
1 TTTA TTTA TT
6799662 AATTATCTAT
Statistics
Matches: 83, Mismatches: 16, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
3 6 0.07
4 67 0.81
5 7 0.08
6 3 0.04
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:6799637 original size:24 final size:24
Alignment explanation
Indices: 6799554--6799666 Score: 137
Period size: 24 Copynumber: 4.8 Consensus size: 24
6799544 GTATTTGTAT
*
6799554 TTTATTTTATTTATTTATT-AT-TA
1 TTTA-TTTATTTATTAATTAATATA
6799577 TTTATTTATTTATTAA-T-ATATA
1 TTTATTTATTTATTAATTAATATA
* *
6799599 TTTGTATTATTTATCAATTAATATA
1 TTTAT-TTATTTATTAATTAATATA
6799624 TTTATTTATTTATCT-ATTAATATA
1 TTTATTTATTTAT-TAATTAATATA
6799648 TTTATTTATTTATTAATTA
1 TTTATTTATTTATTAATTA
6799667 TCTATTAGTA
Statistics
Matches: 79, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
21 3 0.04
22 17 0.22
23 15 0.19
24 35 0.44
25 9 0.11
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.65
Consensus pattern (24 bp):
TTTATTTATTTATTAATTAATATA
Found at i:6800628 original size:61 final size:62
Alignment explanation
Indices: 6800537--6800670 Score: 191
Period size: 62 Copynumber: 2.2 Consensus size: 62
6800527 TGATTCTCCT
* * * *
6800537 AAAATAAAAATTCCAAAAAAATATACTTTTAG-GGAAAAGTTGAAAGTATCAATTTT-TCTTA
1 AAAATAAAATTTCAAAAAAAAAATACTTTTAGTGAAAAAGTTGAAAGTATCAATTTTCT-TTA
* *
6800598 AAAATAAAATTTCAAAAAAAAAATATTTTTAGTGAAAAAGTTGAAAGTATCAATTTTCTTTG
1 AAAATAAAATTTCAAAAAAAAAATACTTTTAGTGAAAAAGTTGAAAGTATCAATTTTCTTTA
6800660 AAAATAAAATT
1 AAAATAAAATT
6800671 ACTAAAATAA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
61 28 0.43
62 36 0.55
63 1 0.02
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (62 bp):
AAAATAAAATTTCAAAAAAAAAATACTTTTAGTGAAAAAGTTGAAAGTATCAATTTTCTTTA
Found at i:6800683 original size:62 final size:59
Alignment explanation
Indices: 6800537--6800670 Score: 171
Period size: 61 Copynumber: 2.2 Consensus size: 59
6800527 TGATTCTCCT
* *
6800537 AAAATAAAAATTCCAAAAAAATATACTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTA
1 AAAAT-AAAATT-CAAAAAAAAATACTTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTA
* *
6800598 AAAATAAAATTTCAAAAAAAAAATATTTTTAGTGAAAAAGTTGAAAGTATCAA-TTTTCTTTG
1 AAAATAAAA-TTC-AAAAAAAAATACTTTTAG-GAAAAAGTTGAAAGTATCAATTTTTC-TTA
6800660 AAAATAAAATT
1 AAAATAAAATT
6800671 ACTAAAATAA
Statistics
Matches: 65, Mismatches: 4, Indels: 8
0.84 0.05 0.10
Matches are distributed among these distances:
60 5 0.08
61 30 0.46
62 30 0.46
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (59 bp):
AAAATAAAATTCAAAAAAAAATACTTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTA
Found at i:6800698 original size:62 final size:62
Alignment explanation
Indices: 6800571--6800700 Score: 138
Period size: 62 Copynumber: 2.1 Consensus size: 62
6800561 ACTTTTAGGG
* *** ***
6800571 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAAAAATATTTTTAGTGA
1 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTACAAAAAAAAAATATTCAAAAAAA
* * *
6800633 AAAAGTTGAAAGTATCAA-TTTTCTTTGAAAATAAAATTACTAAAATAAAAT-TTCCAAAAAAA
1 AAAAGTTGAAAGTATCAATTTTTC-TTAAAAATAAAATTACAAAAAAAAAATATT-CAAAAAAA
6800695 AAAAGT
1 AAAAGT
6800701 ATTTTGAGGA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
61 7 0.12
62 49 0.88
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.32
Consensus pattern (62 bp):
AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTACAAAAAAAAAATATTCAAAAAAA
Found at i:6800716 original size:77 final size:76
Alignment explanation
Indices: 6800598--6800769 Score: 242
Period size: 76 Copynumber: 2.2 Consensus size: 76
6800588 ATTTTTCTTA
* *
6800598 AAAATAAAATTTC-AAAAAAAAAATATTTTTAGTGAAAAAGTTGAAAGTATCAATTTTCTTTGAA
1 AAAATAAAATTTCAAAAAAAAAAATATTTTGAGTGAAAAAGTTGAAAGTATCAATTTTCCTT-AA
6800662 AATAAAATTACT
65 AATAAAATTACT
6800674 AAAATAAAATTTCCAAAAAAAAAAAGTATTTTGAG-G-AAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATAAAATTT-CAAAAAAAAAAA-TATTTTGAGTGAAAAAGTTGAAAGTATCAATTTTCCTTA
** *
6800737 AAATGCAATTTCT
64 AAATAAAATTACT
6800750 AAAATAAAATTTTCAAAAAA
1 AAAATAAAA-TTTCAAAAAA
6800770 TACATTTTGG
Statistics
Matches: 87, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
76 39 0.45
77 29 0.33
78 11 0.13
79 8 0.09
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.32
Consensus pattern (76 bp):
AAAATAAAATTTCAAAAAAAAAAATATTTTGAGTGAAAAAGTTGAAAGTATCAATTTTCCTTAAA
ATAAAATTACT
Found at i:6804181 original size:15 final size:17
Alignment explanation
Indices: 6804144--6804189 Score: 69
Period size: 15 Copynumber: 2.8 Consensus size: 17
6804134 TCTTCATGCA
*
6804144 TGCATTTTCATTCATTG
1 TGCATTTTCATTCAGTG
6804161 TGCATTTTCATTC-GT-
1 TGCATTTTCATTCAGTG
6804176 TGCATTTTCATTCA
1 TGCATTTTCATTCA
6804190 ATACATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 13 0.48
16 1 0.04
17 13 0.48
ACGTcount: A:0.17, C:0.20, G:0.11, T:0.52
Consensus pattern (17 bp):
TGCATTTTCATTCAGTG
Found at i:6811433 original size:15 final size:16
Alignment explanation
Indices: 6811415--6811444 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6811405 ACTATGCTTA
6811415 AAAAAATAA-AAAAAT
1 AAAAAATAATAAAAAT
6811430 AAAAAATAATAAAAA
1 AAAAAATAATAAAAA
6811445 CAAAGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAAAATAATAAAAAT
Found at i:6812164 original size:21 final size:19
Alignment explanation
Indices: 6812136--6812190 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 19
6812126 ATTAGCCAGC
6812136 ATTTGCATAGCATGCATTGA
1 ATTTGCAT-GCATGCATTGA
6812156 ATTT-C--GCATGCATTGA
1 ATTTGCATGCATGCATTGA
6812172 ATTTCGCATGCATTGCATT
1 ATTT-GCATGCA-TGCATT
6812191 TTGCATAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
16 15 0.50
18 1 0.03
19 1 0.03
20 7 0.23
21 6 0.20
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (19 bp):
ATTTGCATGCATGCATTGA
Found at i:6812166 original size:16 final size:16
Alignment explanation
Indices: 6812145--6812201 Score: 87
Period size: 16 Copynumber: 3.5 Consensus size: 16
6812135 CATTTGCATA
6812145 GCATGCATTGAATTTC
1 GCATGCATTGAATTTC
6812161 GCATGCATTGAATTTC
1 GCATGCATTGAATTTC
* *
6812177 GCATGCATTGCATTTT
1 GCATGCATTGAATTTC
6812193 GCATAGCAT
1 GCAT-GCAT
6812202 ATACTGCATA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
16 34 0.89
17 4 0.11
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (16 bp):
GCATGCATTGAATTTC
Found at i:6812633 original size:42 final size:42
Alignment explanation
Indices: 6812450--6812783 Score: 202
Period size: 42 Copynumber: 7.9 Consensus size: 42
6812440 ATGATTTTCA
*
6812450 AGGAGCCATTTA-TTTTT-AAAGTTCTGTT--GCCTCTATTTAG
1 AGGAGCAATTTATTTTTTCAAAG-T-TGTTGAGCCTCTATTTAG
* *
6812490 AGGAGCCATTTA-TTTTTCAAAAGTTCTGTT--GCCTCTGTTTAG
1 AGGAGCAATTTATTTTTTC-AAAG-T-TGTTGAGCCTCTATTTAG
* ** * ** * *
6812532 AGAAAAAATTTATTTTTTCAAAATTACTGAGCCTTTGTTTAG
1 AGGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTATTTAG
*
6812574 AAGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTATTTAG
1 AGGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTATTTAG
* * ** * *
6812616 AGGAGCAATTTATTTTTTTAAAATCATTGAGCTTCTATTTAA
1 AGGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTATTTAG
* ** * *
6812658 AGGAGCTTTATTTATTTTTTTCAAAGTCATTGAGTCTCTGTTTAG
1 AGGAGC--AATTTA-TTTTTTCAAAGTTGTTGAGCCTCTATTTAG
* * *
6812703 AGGAGCTTTATTTATTTTTCCAAAGTCT-TTAAGCCTCTGA-TTAG
1 AGGAGC--AATTTATTTTTTCAAAGT-TGTTGAGCCTCT-ATTTAG
* * * *
6812747 AGGAGTTATGTTTATTTTTT-TAAGTCGTTGAGCCTCT
1 AGGAG-CA-ATTTATTTTTTCAAAGTTGTTGAGCCTCT
6812784 GCTTAAATGA
Statistics
Matches: 237, Mismatches: 44, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
40 19 0.08
41 1 0.00
42 118 0.50
43 19 0.08
44 42 0.18
45 38 0.16
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (42 bp):
AGGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTATTTAG
Found at i:6812647 original size:84 final size:84
Alignment explanation
Indices: 6812481--6812720 Score: 224
Period size: 84 Copynumber: 2.8 Consensus size: 84
6812471 TTCTGTTGCC
* * * **
6812481 TCTATTTAGAGGAGCCATTTA-TTTTTCAAAAGTTCTGTT--GCCTCTGTTTAGAGAAAAAATTT
1 TCTATTTAGAAGAGCAATTTATTTTTTC-AAAG-T-TGTTGAGCCTCTGTTTAGAGGAGCAATTT
* *
6812543 ATTTTTTCAAAATTACTGAGCCT
63 ATTTTTTTAAAATCACTGAG-CT
* *
6812566 T-TGTTTAGAAGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGCAATTTATT
1 TCTATTTAGAAGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCAATTTATT
*
6812630 TTTTTAAAATCATTGAGCT
66 TTTTTAAAATCACTGAGCT
* ** *
6812649 TCTATTTA-AAGGAGCTTTATTTATTTTTTTCAAAGTCATTGAGTCTCTGTTTAGAGGAGC--TT
1 TCTATTTAGAA-GAGC--AATTTA-TTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCAATT
6812711 TATTTATTTT
62 TATTT-TTTT
6812721 TCCAAAGTCT
Statistics
Matches: 130, Mismatches: 16, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
82 4 0.03
83 6 0.05
84 65 0.50
85 14 0.11
86 9 0.07
87 32 0.25
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46
Consensus pattern (84 bp):
TCTATTTAGAAGAGCAATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAGGAGCAATTTATT
TTTTTAAAATCACTGAGCT
Found at i:6812707 original size:45 final size:45
Alignment explanation
Indices: 6812539--6812843 Score: 227
Period size: 42 Copynumber: 7.0 Consensus size: 45
6812529 TAGAGAAAAA
* * * * * *
6812539 ATTTA-TTTTTTCAAAATTACTGAGCCTTTGTTTAGAAGAGC--A
1 ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTT
** * *
6812581 ATTTA-TTTTTTCAAAGTTGTTGAGCCTCTATTTAGAGGAGC--A
1 ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTT
* * * *
6812623 ATTTATTTTTTT-AAAATCATTGAGCTTCTATTTAAAGGAGCTTT
1 ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTT
*
6812667 ATTTATTTTTTTCAAAGTCATTGAGTCTCTGTTTAGAGGAGCTTT
1 ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTT
* * * *
6812712 ATTTA-TTTTTCCAAAGTCTTTAAGCCTCTGATTAGAGGAG-TTAT
1 ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTT-T
* * * * * *
6812756 GTTTATTTTTTT--AAGTCGTTGAGCCTCTGCTTAAATGAGTTTT
1 ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTT
* * * * * * * *
6812799 GTTTATGTTTCTCAAAGGCGTTAAACCTCTGCTTAGAGGAGCTTT
1 ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTT
6812844 GATCAAAATT
Statistics
Matches: 217, Mismatches: 37, Indels: 15
0.81 0.14 0.06
Matches are distributed among these distances:
42 65 0.30
43 41 0.19
44 49 0.23
45 62 0.29
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.45
Consensus pattern (45 bp):
ATTTATTTTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTT
Found at i:6812838 original size:88 final size:88
Alignment explanation
Indices: 6812668--6812839 Score: 211
Period size: 87 Copynumber: 1.9 Consensus size: 88
6812658 AGGAGCTTTA
* * * * * *
6812668 TTTATTTTTTTCAAAGTCATTGAGTCTCTGTTTAGAGGAGCTTTATTTATTTTTCCAAAGTCTTT
1 TTTATTTTTTT-AAAGTCATTGAGCCTCTGCTTAAAGGAGCTTTATTTATGTTTCCAAAGGCGTT
*
6812733 AAGCCTCTGATTAGAGGAGTTATG
65 AAACCTCTGATTAGAGGAGTTATG
* * * *
6812757 TTTATTTTTTT-AAGTCGTTGAGCCTCTGCTTAAATGAGTTTTGTTTATGTTTCTCAAAGGCGTT
1 TTTATTTTTTTAAAGTCATTGAGCCTCTGCTTAAAGGAGCTTTATTTATGTTTC-CAAAGGCGTT
*
6812821 AAACCTCTGCTTAGAGGAG
65 AAACCTCTGATTAGAGGAG
6812840 CTTTGATCAA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
87 34 0.49
88 25 0.36
89 11 0.16
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.45
Consensus pattern (88 bp):
TTTATTTTTTTAAAGTCATTGAGCCTCTGCTTAAAGGAGCTTTATTTATGTTTCCAAAGGCGTTA
AACCTCTGATTAGAGGAGTTATG
Found at i:6813039 original size:6 final size:6
Alignment explanation
Indices: 6813028--6813055 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
6813018 GGGTAAGCCC
6813028 ATTTGT ATTTGT ATTTGT ATTTGT ATTT
1 ATTTGT ATTTGT ATTTGT ATTTGT ATTT
6813056 ATTTTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.14, T:0.68
Consensus pattern (6 bp):
ATTTGT
Found at i:6813076 original size:4 final size:4
Alignment explanation
Indices: 6813051--6813125 Score: 50
Period size: 4 Copynumber: 19.0 Consensus size: 4
6813041 TTTGTATTTG
* *
6813051 TATT TATT TTTAT TA-T TA-T TATT TATT AATATC TATT T-TT TA-T TATT
1 TATT TATT TAT-T TATT TATT TATT TATT --TATT TATT TATT TATT TATT
* * *
6813098 TATC TATT AATA TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT
6813126 ATCTATTAGT
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
3 12 0.22
4 38 0.69
5 2 0.04
6 3 0.05
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (4 bp):
TATT
Found at i:6813119 original size:27 final size:27
Alignment explanation
Indices: 6813059--6813149 Score: 93
Period size: 27 Copynumber: 3.4 Consensus size: 27
6813049 TGTATTTATT
*
6813059 TTTA-TTATTA-TTATTTATTAATATCTA
1 TTTATTTATTATTTATCTATTAATA--TA
6813086 TTT-TTTATTATTTATCTATTAATATA
1 TTTATTTATTATTTATCTATTAATATA
*
6813112 TTTATTTATT-TATTATCTATTAGTATA
1 TTTATTTATTAT-TTATCTATTAATATA
*
6813139 TATATTT-TTAT
1 TTTATTTATTAT
6813150 CTTTTTTTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
26 8 0.14
27 36 0.64
28 12 0.21
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTATTTATTATTTATCTATTAATATA
Found at i:6813971 original size:11 final size:11
Alignment explanation
Indices: 6813948--6813986 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
6813938 TTATTCCTTA
6813948 ATTTTTATCTTT
1 ATTTTTAT-TTT
6813960 ATTTTTATTTT
1 ATTTTTATTTT
*
6813971 ATTTTTTTTTT
1 ATTTTTATTTT
*
6813982 CTTTT
1 ATTTT
6813987 CTTAATGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 17 0.68
12 8 0.32
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:6814164 original size:69 final size:68
Alignment explanation
Indices: 6814044--6814183 Score: 192
Period size: 69 Copynumber: 2.0 Consensus size: 68
6814034 AGAAAAGTTG
* **
6814044 AAAGTATCAATTTTCCTTGAAAATAAAATTACTAAAATAAAATTTCCAAAAAAAAAGTATTTTGA
1 AAAGTATCAATTTTCCTTGAAAATAAAATTACTAAAATAAAATTT-AAAAAAAAAAACATTTTG-
6814109 GGAAA
64 GGAAA
** * *
6814114 AAAGTATCAATTTTCCTT-AAAATGTAATTTCTAAAATAAAATTTAAAAAAAAATACATTTTGGG
1 AAAGTATCAATTTTCCTTGAAAATAAAATTACTAAAATAAAATTTAAAAAAAAAAACATTTTGGG
6814178 AAA
66 AAA
6814181 AAA
1 AAA
6814184 TTAGAAGTAC
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
67 8 0.13
68 14 0.22
69 23 0.37
70 18 0.29
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (68 bp):
AAAGTATCAATTTTCCTTGAAAATAAAATTACTAAAATAAAATTTAAAAAAAAAAACATTTTGGG
AAA
Found at i:6814914 original size:63 final size:62
Alignment explanation
Indices: 6814815--6814940 Score: 189
Period size: 63 Copynumber: 2.0 Consensus size: 62
6814805 TATAATATAG
* *
6814815 AATAACTTTATATATTGTTAATTACATATATAAATAAAAAGTTACAACATTATAAATACATAA
1 AATAACTTTATATATTATTAATTACATATATAAATAAAAA-TTACAACATTACAAATACATAA
* * * *
6814878 AATAATTTTATATATTATTAATTGCATATATAAATAAACATTACAGCATTACAAATACATAA
1 AATAACTTTATATATTATTAATTACATATATAAATAAAAATTACAACATTACAAATACATAA
6814940 A
1 A
6814941 TACAAAAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
62 21 0.37
63 36 0.63
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.37
Consensus pattern (62 bp):
AATAACTTTATATATTATTAATTACATATATAAATAAAAATTACAACATTACAAATACATAA
Found at i:6817661 original size:57 final size:57
Alignment explanation
Indices: 6817586--6817698 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 57
6817576 AACCAAACAA
* *
6817586 AAGAAAAGTATATTAGACGAAATCTAAAAACCTTTGTAATG-TAAATAAA-AACTAGCG
1 AAGAAAAATATACTAGACGAAATCTAAAAACCTTTGTAA-GCTAAA-AAAGAACTAGCG
6817643 AAGAAAAATATACTAGACGAAATCTAAAAACCTTTGTAAGCTAAAAAAGAACTAGC
1 AAGAAAAATATACTAGACGAAATCTAAAAACCTTTGTAAGCTAAAAAAGAACTAGC
6817699 AACCTGCCCA
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
56 4 0.08
57 48 0.92
ACGTcount: A:0.52, C:0.12, G:0.13, T:0.22
Consensus pattern (57 bp):
AAGAAAAATATACTAGACGAAATCTAAAAACCTTTGTAAGCTAAAAAAGAACTAGCG
Found at i:6818502 original size:24 final size:24
Alignment explanation
Indices: 6818470--6818525 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
6818460 GAGGTATTTG
6818470 ATGGATAG-ATGCTATTGAAGTTTT
1 ATGGATAGAATGCTA-TGAAGTTTT
* *
6818494 ATGGATAGATATGTTATGATGTTTT
1 ATGGATAGA-ATGCTATGAAGTTTT
6818519 ATGGATA
1 ATGGATA
6818526 CTATGGATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 8 0.29
25 15 0.54
26 5 0.18
ACGTcount: A:0.30, C:0.02, G:0.25, T:0.43
Consensus pattern (24 bp):
ATGGATAGAATGCTATGAAGTTTT
Found at i:6818679 original size:21 final size:19
Alignment explanation
Indices: 6818628--6818670 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
6818618 AAATTGTAAT
6818628 TTATAGGTTTTTTAAATAA
1 TTATAGGTTTTTTAAATAA
*
6818647 TTATAGGTTTTTTGAATAA
1 TTATAGGTTTTTTAAATAA
6818666 TTATA
1 TTATA
6818671 AATGTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (19 bp):
TTATAGGTTTTTTAAATAA
Found at i:6821076 original size:15 final size:16
Alignment explanation
Indices: 6821056--6821085 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
6821046 ACACATTGTG
6821056 ATTTATT-TTTTTATT
1 ATTTATTGTTTTTATT
6821071 ATTTATTGTTTTTAT
1 ATTTATTGTTTTTAT
6821086 ACTATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
ATTTATTGTTTTTATT
Found at i:6821346 original size:17 final size:16
Alignment explanation
Indices: 6821324--6821355 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
6821314 ATTATTTTGC
6821324 TTTTAAAAAATTAATTT
1 TTTTAAAAAA-TAATTT
6821341 TTTTAAAAAATAATT
1 TTTTAAAAAATAATT
6821356 AGTTTTGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTTAAAAAATAATTT
Found at i:6821361 original size:17 final size:17
Alignment explanation
Indices: 6821324--6821361 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
6821314 ATTATTTTGC
*
6821324 TTTTAAAAAATTAATTT
1 TTTTAAAAAATTAATTG
6821341 TTTTAAAAAA-TAATTAG
1 TTTTAAAAAATTAATT-G
6821358 TTTT
1 TTTT
6821362 GCAAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTTAAAAAATTAATTG
Found at i:6821440 original size:17 final size:16
Alignment explanation
Indices: 6821418--6821464 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
6821408 TCATTGCTAA
*
6821418 AAAATATGAATAGTAAT
1 AAAATAT-AATAATAAT
6821435 AAAATAATAATAATAAT
1 AAAAT-ATAATAATAAT
*
6821452 AATA-ATAATAATA
1 AAAATATAATAATA
6821465 TCATTATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 9 0.33
17 16 0.59
18 2 0.07
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (16 bp):
AAAATATAATAATAAT
Found at i:6821445 original size:3 final size:3
Alignment explanation
Indices: 6821426--6821464 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
6821416 AAAAAATATG
*
6821426 AAT AGT AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
6821465 TCATTATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:6821487 original size:20 final size:21
Alignment explanation
Indices: 6821470--6821527 Score: 66
Period size: 20 Copynumber: 2.8 Consensus size: 21
6821460 TAATATCATT
6821470 ATAAAA-AAATAAAAATCAAC
1 ATAAAATAAATAAAAATCAAC
*
6821490 ATAAAATAAAT-AAAATCAAA
1 ATAAAATAAATAAAAATCAAC
*
6821510 ATCAAAACAAAATAAAAA
1 AT-AAAA-TAAATAAAAA
6821528 AAAAGAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 16 0.50
21 8 0.25
22 4 0.12
23 4 0.12
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.16
Consensus pattern (21 bp):
ATAAAATAAATAAAAATCAAC
Found at i:6821510 original size:26 final size:25
Alignment explanation
Indices: 6821470--6821529 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 25
6821460 TAATATCATT
* *
6821470 ATAAAAAAATAAAAATCAACATAAA
1 ATAAAAAAATAAAAATCAAAACAAA
*
6821495 ATAAATAAAATCAAAATCAAAACAAA
1 ATAAA-AAAATAAAAATCAAAACAAA
6821521 ATAAAAAAA
1 ATAAAAAAA
6821530 AAGAAAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 9 0.29
26 22 0.71
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (25 bp):
ATAAAAAAATAAAAATCAAAACAAA
Found at i:6821536 original size:26 final size:25
Alignment explanation
Indices: 6821470--6821536 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 25
6821460 TAATATCATT
* * *
6821470 ATAAAAAAATAAAAATCAACATAAA
1 ATAAAAAAAAAAAAATCAAAACAAA
**
6821495 ATAAATAAAATCAAAATCAAAACAAA
1 ATAAA-AAAAAAAAAATCAAAACAAA
6821521 ATAAAAAAAAAGAAAA
1 ATAAAAAAAAA-AAAA
6821537 AGAAAAGGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 9 0.26
26 26 0.74
ACGTcount: A:0.78, C:0.07, G:0.01, T:0.13
Consensus pattern (25 bp):
ATAAAAAAAAAAAAATCAAAACAAA
Found at i:6822442 original size:41 final size:42
Alignment explanation
Indices: 6822394--6822474 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
6822384 TTTTTGAAAA
* *
6822394 AAATTTAAAGGGCT-TTTTAAGC-AAAGGCTATGAAACTTTTG
1 AAATTTAAAAGACTCTTTTAA-CTAAAGGCTATGAAACTTTTG
* *
6822435 AAATTTAAAAGACTCTTTTGACTAGAGGCTATGAAACTTT
1 AAATTTAAAAGACTCTTTTAACTAAAGGCTATGAAACTTT
6822475 AAATTCAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 13 0.38
42 21 0.62
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (42 bp):
AAATTTAAAAGACTCTTTTAACTAAAGGCTATGAAACTTTTG
Found at i:6822710 original size:41 final size:39
Alignment explanation
Indices: 6822623--6822715 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 39
6822613 AGAAGCTATA
* *
6822623 AAACTTTAAATTCAAAAGGTTTATTTGCCTAGAGGTAAT
1 AAACTTTAAATTCAAAAGATTTATTTGCCTAGAGGCAAT
6822662 AAGACTTTAAATTCAAAA-ATTCTCATTTGACC-AGAGGCAAT
1 AA-ACTTTAAATTCAAAAGATT-T-ATTTG-CCTAGAGGCAAT
6822703 GAAACTTTAAATT
1 -AAACTTTAAATT
6822716 GCTTTTCTGA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
39 4 0.09
40 16 0.34
41 23 0.49
42 4 0.09
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
AAACTTTAAATTCAAAAGATTTATTTGCCTAGAGGCAAT
Found at i:6822771 original size:75 final size:75
Alignment explanation
Indices: 6822689--6822832 Score: 193
Period size: 75 Copynumber: 1.9 Consensus size: 75
6822679 AATTCTCATT
* * *
6822689 TGACCAGAGGCAATGAAACTT-TAAATTGCT-TTTCTGATCAGAGGCAATAAAAATTTAGAATTT
1 TGACCAGAGGCAATGAAA-TTGTAAATGGCTCCTT-TGACCAGAGGCAATAAAAATTTAGAATTT
6822752 AAAAGGCTCCTC
64 AAAAGGCTCCTC
* * * *
6822764 TGACCAGAGGTAATGAAATTGTAAATGGCTCCTTTGACCAGAGGTAATGAAATTTTAGAATTTAA
1 TGACCAGAGGCAATGAAATTGTAAATGGCTCCTTTGACCAGAGGCAATAAAAATTTAGAATTTAA
6822829 AAGG
66 AAGG
6822833 ACACTTTAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
74 2 0.03
75 56 0.93
76 2 0.03
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (75 bp):
TGACCAGAGGCAATGAAATTGTAAATGGCTCCTTTGACCAGAGGCAATAAAAATTTAGAATTTAA
AAGGCTCCTC
Found at i:6822802 original size:34 final size:33
Alignment explanation
Indices: 6822747--6822818 Score: 117
Period size: 34 Copynumber: 2.2 Consensus size: 33
6822737 AAAAATTTAG
6822747 AATTTAAAAGGCTCCTCTGACCAGAGGTAATGA
1 AATTTAAAAGGCTCCTCTGACCAGAGGTAATGA
* *
6822780 AATTGTAAATGGCTCCTTTGACCAGAGGTAATGA
1 AATT-TAAAAGGCTCCTCTGACCAGAGGTAATGA
6822814 AATTT
1 AATTT
6822819 TAGAATTTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
33 5 0.14
34 31 0.86
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (33 bp):
AATTTAAAAGGCTCCTCTGACCAGAGGTAATGA
Found at i:6829782 original size:21 final size:20
Alignment explanation
Indices: 6829740--6829782 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
6829730 TGAATTTTTA
*
6829740 GAAAAAGAAAATTTTGATTT
1 GAAAAAGAAAATTTTGAATT
6829760 GAAAAAG-AAATTTGATGAATT
1 GAAAAAGAAAATTT--TGAATT
6829781 GA
1 GA
6829783 TGAATGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 7 0.35
21 7 0.35
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (20 bp):
GAAAAAGAAAATTTTGAATT
Found at i:6837883 original size:3 final size:3
Alignment explanation
Indices: 6837875--6837936 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
6837865 TACTCATTTC
6837875 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6837923 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
6837937 TCATCATCAT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:6839162 original size:18 final size:17
Alignment explanation
Indices: 6839141--6839180 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
6839131 TTATCTAATT
*
6839141 AAAAAAGTCAAAAACAA
1 AAAAAAGACAAAAACAA
*
6839158 AAAAAAGACAAAAAGAA
1 AAAAAAGACAAAAACAA
6839175 AAAAAA
1 AAAAAA
6839181 AGCCAAATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.82, C:0.07, G:0.07, T:0.03
Consensus pattern (17 bp):
AAAAAAGACAAAAACAA
Found at i:6839181 original size:18 final size:17
Alignment explanation
Indices: 6839141--6839187 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
6839131 TTATCTAATT
* *
6839141 AAAAAAGTCAAAAACAA
1 AAAAAAGACAAAAAAAA
6839158 AAAAAAGACAAAAAGAAA
1 AAAAAAGACAAAAA-AAA
*
6839176 AAAAAAGCCAAA
1 AAAAAAGACAAA
6839188 TGGATATGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.79, C:0.11, G:0.09, T:0.02
Consensus pattern (17 bp):
AAAAAAGACAAAAAAAA
Found at i:6839466 original size:7 final size:6
Alignment explanation
Indices: 6839457--6839492 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
6839447 AAAAAAGTAA
6839457 AAAAGG AAAAAGG AAAAGG AAAAGG AAAAGG AAAAG
1 AAAAGG -AAAAGG AAAAGG AAAAGG AAAAGG AAAAG
6839493 AAAGAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 23 0.79
7 6 0.21
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:6839503 original size:18 final size:18
Alignment explanation
Indices: 6839457--6839492 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
6839447 AAAAAAGTAA
6839457 AAAAGGAAAAAGGAAAAGG
1 AAAAGGAAAAA-GAAAAGG
*
6839476 AAAAGGAAAAGGAAAAG
1 AAAAGGAAAAAGAAAAG
6839493 AAAGAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (18 bp):
AAAAGGAAAAAGAAAAGG
Found at i:6843310 original size:3 final size:3
Alignment explanation
Indices: 6843302--6843345 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
6843292 TGGACCTAAT
6843302 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6843346 TTGGAATATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6844109 original size:12 final size:12
Alignment explanation
Indices: 6844092--6844141 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
6844082 GCGCCAAAGG
6844092 TTTTTTT-TTTA
1 TTTTTTTATTTA
6844103 TTTTTTTCA-TTA
1 TTTTTTT-ATTTA
*
6844115 GTTTTATTATTTA
1 -TTTTTTTATTTA
*
6844128 TTTATTTATTTA
1 TTTTTTTATTTA
6844140 TT
1 TT
6844142 AAATTGAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
11 7 0.22
12 16 0.50
13 9 0.28
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTTTTTATTTA
Found at i:6844264 original size:60 final size:59
Alignment explanation
Indices: 6844200--6844432 Score: 237
Period size: 60 Copynumber: 3.9 Consensus size: 59
6844190 GATCTCTTCA
* *
6844200 AAAATAAAAATTTTAAAATATATATTTTTTAAAAAAAGTTGAAAGTATCAA-TTTCTTTTG
1 AAAATAAAAATTTTAAAA-ATATATTTTTTAGAAAAAGTTGAAAGTATCAATTTTC-CTTG
*
6844260 AAAATAAAAATTTTAAAAA-ATTATTTTTTTGAGAAAAAGTTGAAAATATCAATTTTCCTTG
1 AAAATAAAAATTTTAAAAATA-TA-TTTTTT-AGAAAAAGTTGAAAGTATCAATTTTCCTTG
* * * *
6844321 AAGATAAAGATTTCTAAAAA-ATATTTTTGAGGAAAAAGTTGAAAGTATCAAATTTTCCTTA
1 AAAATAAAAATTT-TAAAAATATATTTTTTA-GAAAAAGTTGAAAGTATC-AATTTTCCTTG
* * * *
6844382 AAAAT-AAAATTGTT-AACA-A-ACTTTTAAGGAAAAGTTGAAAGTATCAATTTT
1 AAAATAAAAATT-TTAAAAATATATTTTTTAGAAAAAGTTGAAAGTATCAATTTT
6844433 TCTTTTTAAA
Statistics
Matches: 151, Mismatches: 14, Indels: 20
0.82 0.08 0.11
Matches are distributed among these distances:
56 6 0.04
57 17 0.11
58 7 0.05
59 8 0.05
60 52 0.34
61 50 0.33
62 11 0.07
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (59 bp):
AAAATAAAAATTTTAAAAATATATTTTTTAGAAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:6844312 original size:61 final size:60
Alignment explanation
Indices: 6844200--6844432 Score: 241
Period size: 61 Copynumber: 3.9 Consensus size: 60
6844190 GATCTCTTCA
* * *
6844200 AAAATAAAAATTTTAAAATATATATTTTTT-AAAAAAAGTTGAAAGTATCAA-TTTCTTTTG
1 AAAATAAAAATTTTAAAAAATAT-TTTTTTGAGAAAAAGTTGAAAGTATCAATTTTC-CTTG
*
6844260 AAAATAAAAATTTTAAAAAATTATTTTTTTGAGAAAAAGTTGAAAATATCAATTTTCCTTG
1 AAAATAAAAATTTTAAAAAA-TATTTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
* * *
6844321 AAGATAAAGATTTCTAAAAAATA--TTTTTGAGGAAAAAGTTGAAAGTATCAAATTTTCCTTA
1 AAAATAAAAATTT-TAAAAAATATTTTTTTGA-GAAAAAGTTGAAAGTATC-AATTTTCCTTG
* * * *
6844382 AAAAT-AAAATTGTT-AACAA-A--CTTTTAAGGAAAAGTTGAAAGTATCAATTTT
1 AAAATAAAAATT-TTAAAAAATATTTTTTTGAGAAAAAGTTGAAAGTATCAATTTT
6844433 TCTTTTTAAA
Statistics
Matches: 152, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
56 6 0.04
57 17 0.11
58 6 0.04
59 11 0.07
60 48 0.32
61 53 0.35
62 11 0.07
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.37
Consensus pattern (60 bp):
AAAATAAAAATTTTAAAAAATATTTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:6844504 original size:45 final size:45
Alignment explanation
Indices: 6844407--6844504 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
6844397 ACAAACTTTT
* * ** * *
6844407 AAGGAAAAGTTGAAAGTATCAATTTTTCTTTTTAAAAAACATTTT
1 AAGGAAAAATTAAAAGTATCAATTTTTCTTTAAAAAAAAAATTTC
6844452 AAGGAAAAATTAAAAGTATCAATTTTTC-TTAAAAATAAAAATTATC
1 AAGGAAAAATTAAAAGTATCAATTTTTCTTTAAAAA-AAAAATT-TC
6844498 AA-GAAAA
1 AAGGAAAA
6844505 GTATTTTGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 5 0.11
45 37 0.82
46 3 0.07
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (45 bp):
AAGGAAAAATTAAAAGTATCAATTTTTCTTTAAAAAAAAAATTTC
Found at i:6844528 original size:105 final size:103
Alignment explanation
Indices: 6844335--6844541 Score: 267
Period size: 105 Copynumber: 2.0 Consensus size: 103
6844325 TAAAGATTTC
* * * * * *
6844335 TAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAAATTTTCCTTAAAAATAAAATTGTTAACA
1 TAAAAAACATTTTTAAGGAAAAAGTTAAAAGTATCAAATTTTCCTTAAAAATAAAATTATCAAAA
*
6844400 AACTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTTT
66 AAATTTTAAGGAAAAGTTGAAAGTATCAA-TTTTCTTTT
*
6844439 TAAAAAACA-TTTTAAGGAAAAA-TTAAAAGTATC-AATTTTTCTTAAAAATAAAAATTATCAAG
1 TAAAAAACATTTTTAAGGAAAAAGTTAAAAGTATCAAATTTTCCTTAAAAAT-AAAATTATCAA-
*
6844501 AAAAGTATTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTT
64 AAAA--ATTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTT
6844542 GAAATTAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
101 15 0.17
102 19 0.21
103 15 0.17
104 16 0.18
105 25 0.28
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.36
Consensus pattern (103 bp):
TAAAAAACATTTTTAAGGAAAAAGTTAAAAGTATCAAATTTTCCTTAAAAATAAAATTATCAAAA
AAATTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTT
Found at i:6844551 original size:60 final size:60
Alignment explanation
Indices: 6844441--6844669 Score: 236
Period size: 60 Copynumber: 3.9 Consensus size: 60
6844431 TTTCTTTTTA
* * *
6844441 AAAAACATTTTAAGGAAAAATTAAAAGTATCAATTTT-TCTTAAAAATAAAAATTATCAAG
1 AAAAGCATTTTAAGGAAAAGTTGAAAGTATCAATTTTCT-TTAAAAATAAAAATTATCAAG
* * * * * * *
6844501 AAAAGTATTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTT-GAAATTAAAATTTTAGAAA
1 AAAAGCATTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAAATTAT-CAAG
* * * *
6844561 AAAAGCATTTTGAGGAAAAGTTGGAAA--ACCAATTTTCCTTAAAAGTAAAAATTATCAAG
1 AAAAGCATTTTAAGGAAAAGTT-GAAAGTATCAATTTTCTTTAAAAATAAAAATTATCAAG
* *
6844620 AAAAACATTATAAGGAAAAGTTGAAAGTATCAAATTTTC-TT-AAAATAAAA
1 AAAAGCATTTTAAGGAAAAGTTGAAAGTATC-AATTTTCTTTAAAAATAAAA
6844670 GCTCCTAAGT
Statistics
Matches: 138, Mismatches: 24, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
58 4 0.03
59 51 0.37
60 71 0.51
61 12 0.09
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.31
Consensus pattern (60 bp):
AAAAGCATTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAAAATTATCAAG
Found at i:6854893 original size:15 final size:14
Alignment explanation
Indices: 6854873--6854903 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
6854863 GAGGGTTCTA
6854873 AAAGAAGTTGAACTG
1 AAAGAAGTTGAA-TG
6854888 AAAGAAGTTGAATG
1 AAAGAAGTTGAATG
6854902 AA
1 AA
6854904 TTCGAGAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.52, C:0.03, G:0.26, T:0.19
Consensus pattern (14 bp):
AAAGAAGTTGAATG
Found at i:6855274 original size:25 final size:23
Alignment explanation
Indices: 6855223--6855273 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
6855213 ACTATGCTTG
6855223 AAAAGAAAAAGAAAAAAATAAAA
1 AAAAGAAAAAGAAAAAAATAAAA
6855246 AAAAGCAAAGAAG-AAAAAATAAAA
1 AAAAG-AAA-AAGAAAAAAATAAAA
6855270 AAAA
1 AAAA
6855274 AAGACTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 5 0.19
24 18 0.69
25 3 0.12
ACGTcount: A:0.84, C:0.02, G:0.10, T:0.04
Consensus pattern (23 bp):
AAAAGAAAAAGAAAAAAATAAAA
Found at i:6856338 original size:40 final size:40
Alignment explanation
Indices: 6856283--6856361 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
6856273 TATTTTTTAA
* * *
6856283 AAAGTTGTTGAGCCTCTAATTAGAGGAGCTTTGTTTATTC
1 AAAGTTGTTAAGCCTCTAATTAGAGGAGCTATATTTATTC
*
6856323 AAAGTTGTTAAGCCTCTGATTAGAGGAGCTATATTTATT
1 AAAGTTGTTAAGCCTCTAATTAGAGGAGCTATATTTATT
6856362 TTCTCATAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (40 bp):
AAAGTTGTTAAGCCTCTAATTAGAGGAGCTATATTTATTC
Found at i:6856419 original size:41 final size:42
Alignment explanation
Indices: 6856355--6856445 Score: 121
Period size: 41 Copynumber: 2.2 Consensus size: 42
6856345 GAGGAGCTAT
* * *
6856355 ATTTATTTTCTCATAGTTCTGTTGCC-CTATTTAGATGAGCC
1 ATTTATTTTCTCAAAGTTCTGTTGCCTCTATTCAGAGGAGCC
* * *
6856396 ATTTGTTTTTTCAAAGTTCTGTTGCCTCTATTCAGAGGATCC
1 ATTTATTTTCTCAAAGTTCTGTTGCCTCTATTCAGAGGAGCC
6856438 ATTTATTT
1 ATTTATTT
6856446 ATTTATTTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
41 23 0.55
42 19 0.45
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (42 bp):
ATTTATTTTCTCAAAGTTCTGTTGCCTCTATTCAGAGGAGCC
Found at i:6856503 original size:37 final size:37
Alignment explanation
Indices: 6856451--6856522 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
6856441 TATTTATTTA
*
6856451 TTTATTTATTAAAAGTTTTGTTACCTCTATTCAGATG
1 TTTATTTATTAAAAGTTGTGTTACCTCTATTCAGATG
* * * *
6856488 TTTATTTTTTCAAAGTTGTGTTGCCTTTATTCAGA
1 TTTATTTATTAAAAGTTGTGTTACCTCTATTCAGA
6856523 AGAGCAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.24, C:0.11, G:0.12, T:0.53
Consensus pattern (37 bp):
TTTATTTATTAAAAGTTGTGTTACCTCTATTCAGATG
Found at i:6856791 original size:3 final size:3
Alignment explanation
Indices: 6856769--6856846 Score: 113
Period size: 3 Copynumber: 26.0 Consensus size: 3
6856759 GGGCCCAATT
* * *
6856769 TTA TTT TTA TT- TTCA TTA TTA TTA TTA TTA CTA TTA TTA TCA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6856814 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
6856847 ATTTTTTTAG
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
2 2 0.03
3 63 0.94
4 2 0.03
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:6857069 original size:20 final size:21
Alignment explanation
Indices: 6857046--6857084 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
6857036 CACAGATCAG
*
6857046 AACACACG-AAAAAAAAAGAA
1 AACAAACGCAAAAAAAAAGAA
*
6857066 AACAAAGGCAAAAAAAAAG
1 AACAAACGCAAAAAAAAAG
6857085 GTTCTGATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.74, C:0.13, G:0.13, T:0.00
Consensus pattern (21 bp):
AACAAACGCAAAAAAAAAGAA
Found at i:6857742 original size:61 final size:61
Alignment explanation
Indices: 6857647--6857841 Score: 206
Period size: 61 Copynumber: 3.2 Consensus size: 61
6857637 AAAATTAGAT
* *
6857647 TTTTTAAAAAATATATATATTTTTAAAAGAAAGTTGAAAGTATCAATTTCTTTTGAAAATAAAA
1 TTTTCAAAAAAT-TAT-T-TTTTTGAAAGAAAGTTGAAAGTATCAATTTCTTTTGAAAATAAAA
* *
6857711 TTTTCAAAAAATTATTTTTTTGAAAGAAAGTTGAAAGTATAAATTT-TCCTTGAAAAT-AAA
1 TTTTCAAAAAATTATTTTTTTGAAAGAAAGTTGAAAGTATCAATTTCT-TTTGAAAATAAAA
**
6857771 TATTTCTAAAAAA-TATTTTTGAGAAA-AAAGTTGAAAGTATCAATTTTTCTTTT-AAAA-AAAA
1 T-TTTC-AAAAAATTATTTTTTTGAAAGAAAGTTGAAAGTATCAA--TTTCTTTTGAAAATAAAA
*
6857832 TTCT-AAAAAA
1 TTTTCAAAAAA
6857842 CATTTTAAGG
Statistics
Matches: 115, Mismatches: 9, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
58 6 0.05
60 23 0.20
61 59 0.51
62 12 0.10
63 4 0.03
64 11 0.10
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.39
Consensus pattern (61 bp):
TTTTCAAAAAATTATTTTTTTGAAAGAAAGTTGAAAGTATCAATTTCTTTTGAAAATAAAA
Found at i:6857876 original size:56 final size:57
Alignment explanation
Indices: 6857676--6858048 Score: 303
Period size: 57 Copynumber: 6.4 Consensus size: 57
6857666 TTTTTAAAAG
* * * *
6857676 AAAGTTGAAAGTATCAATTTCTT-TTGAAAAT-AAAATTTTCAAAAAATTATTTTTTTGAAAG-
1 AAAGTTGAAAGTATCAATTT-TTCTTAAAAATAAAAATTCT-AAAAAA-CA---TTTT-AAGGA
* * * * * * *
6857737 AAAGTTGAAAGTATAAATTTTCCTTGAAAATAAATATTTCTAAAAAATATTTTTGAGAAA
1 AAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-AATTCTAAAAAACA-TTTTAAG-GA
**
6857797 AAAGTTGAAAGTATCAATTTTTCTTTTAAA-AAAAATTCTAAAAAACATTTTAAGGA
1 AAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTCTAAAAAACATTTTAAGGA
* * * * *
6857853 AAAGTTAAAAATATCAATTTTTCTTAAAAATAAAAATTATAAAAAAAATTTTGAGGA
1 AAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTCTAAAAAACATTTTAAGGA
* * *
6857910 AAAGTTGGAAA-TACCAATTTTTTTTAAAAATAAAAATTATCAAGAAAAACATTTTAAGGA
1 AAAGTT-GAAAGTATCAATTTTTCTTAAAAATAAAAA-T-TCTA-AAAAACATTTTAAGGA
* * * * * ***
6857970 AAAATTAAAAGTAT-TATTTTT-TTAAAAATAAAAACTC-ACAAAATGCTTTAAGGA
1 AAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTCTAAAAAACATTTTAAGGA
6858024 AAAGTTGAAAGTATCAATTTTTCTT
1 AAAGTTGAAAGTATCAATTTTTCTT
6858049 GTAGAAAAGT
Statistics
Matches: 258, Mismatches: 41, Indels: 31
0.78 0.12 0.09
Matches are distributed among these distances:
54 24 0.09
55 7 0.03
56 31 0.12
57 58 0.22
58 30 0.12
59 19 0.07
60 48 0.19
61 29 0.11
62 8 0.03
63 4 0.02
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.36
Consensus pattern (57 bp):
AAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAAATTCTAAAAAACATTTTAAGGA
Found at i:6858143 original size:16 final size:16
Alignment explanation
Indices: 6858119--6858155 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
6858109 TCATTATTCC
*
6858119 TCTTTTTTTATTTTTTT
1 TCTTTTTTT-TTTCTTT
6858136 TCTTTTTTTTTTCTTT
1 TCTTTTTTTTTTCTTT
6858152 TCTT
1 TCTT
6858156 GAAAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (16 bp):
TCTTTTTTTTTTCTTT
Found at i:6859228 original size:2 final size:2
Alignment explanation
Indices: 6859183--6859208 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6859173 TTAACTTCAT
6859183 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
6859209 CACACACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:6861422 original size:15 final size:15
Alignment explanation
Indices: 6861404--6861434 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
6861394 AATTTAATAA
6861404 ATAAATTTATTTAAT
1 ATAAATTTATTTAAT
6861419 ATAAATTTATTTAAT
1 ATAAATTTATTTAAT
6861434 A
1 A
6861435 AATTATCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAAATTTATTTAAT
Found at i:6861661 original size:2 final size:2
Alignment explanation
Indices: 6861654--6861681 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6861644 ATCCAACACG
6861654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6861682 CATGTTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6862412 original size:17 final size:18
Alignment explanation
Indices: 6862372--6862418 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
6862362 TAAAATTTTC
*
6862372 TTAAAACAAAAAAATTAA
1 TTAAAACTAAAAAATTAA
* *
6862390 TAAAAACTAAAAAA-TAT
1 TTAAAACTAAAAAATTAA
6862407 TTAAAA-TAAAAA
1 TTAAAACTAAAAA
6862419 TATAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 6 0.24
17 7 0.28
18 12 0.48
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (18 bp):
TTAAAACTAAAAAATTAA
Found at i:6862436 original size:24 final size:23
Alignment explanation
Indices: 6862388--6862435 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
6862378 CAAAAAAATT
6862388 AATAAAAACTAAAAAATATTTAA
1 AATAAAAACTAAAAAATATTTAA
*
6862411 AATAAAAA-TATAAAAATTTTTAA
1 AATAAAAACTA-AAAAATATTTAA
6862434 AA
1 AA
6862436 AAATCTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (23 bp):
AATAAAAACTAAAAAATATTTAA
Found at i:6862451 original size:20 final size:20
Alignment explanation
Indices: 6862414--6862450 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
6862404 TATTTAAAAT
6862414 AAAAATATAAAAATTTTTAA
1 AAAAATATAAAAATTTTTAA
*
6862434 AAAAATCT-AAAATTTTT
1 AAAAATATAAAAATTTTT
6862451 TCATTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATATAAAAATTTTTAA
Found at i:6862606 original size:19 final size:21
Alignment explanation
Indices: 6862584--6862633 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
6862574 AAATTATTTC
6862584 ATTTTCAAAAA-ATTTTAGA-
1 ATTTTCAAAAAGATTTTAGAT
* *
6862603 ATTTTTAAAAAGTTTTTAGAT
1 ATTTTCAAAAAGATTTTAGAT
6862624 ATTTTCAAAA
1 ATTTTCAAAA
6862634 TTTTTGGTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 10 0.38
20 7 0.27
21 9 0.35
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (21 bp):
ATTTTCAAAAAGATTTTAGAT
Found at i:6862637 original size:19 final size:18
Alignment explanation
Indices: 6862584--6862638 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 18
6862574 AAATTATTTC
*
6862584 ATTTTCAAAAAATTTTAGA
1 ATTTTC-AAAATTTTTAGA
*
6862603 ATTTTTAAAAAGTTTTTAGA
1 A-TTTTCAAAA-TTTTTAGA
6862623 TATTTTCAAAATTTTT
1 -ATTTTCAAAATTTTT
6862639 GGTGAGTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 10 0.33
20 19 0.63
21 1 0.03
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTTTCAAAATTTTTAGA
Found at i:6862857 original size:31 final size:29
Alignment explanation
Indices: 6862780--6862927 Score: 95
Period size: 31 Copynumber: 4.9 Consensus size: 29
6862770 AATATATTTC
* * *
6862780 ATATTCTT-TAATTTTTTATAAATTTAAAA
1 ATATT-TTATAATTTTTTAGAATTTTTAAA
* *
6862809 AAATTTTAAAAAGTTTTTTAGAATTTATTAAA
1 ATATTTT-ATAA-TTTTTTAGAATTT-TTAAA
6862841 ATATTTTATAACTTTTTTAGAATTGTTTTAAA
1 ATATTTTATAA-TTTTTTAGAA-T-TTTTAAA
* * *
6862873 AT-TTTCATAATATTTTAAAATTTTTGAAA
1 ATATTTTATAATTTTTTAGAATTTTT-AAA
* * *
6862902 A-ATTTTAAAAAGTTTTTATAATTTTT
1 ATATTTT-ATAATTTTTTAGAATTTTT
6862928 TTTATTTTTA
Statistics
Matches: 94, Mismatches: 16, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
28 6 0.06
29 12 0.13
30 25 0.27
31 31 0.33
32 18 0.19
33 2 0.02
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (29 bp):
ATATTTTATAATTTTTTAGAATTTTTAAA
Found at i:6862906 original size:19 final size:19
Alignment explanation
Indices: 6862866--6862911 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
6862856 TTTAGAATTG
*
6862866 TTTTAAAATTTTCATAATA
1 TTTTAAAATTTTCATAAAA
*
6862885 TTTTAAAATTTTTGA-AAAA
1 TTTTAAAA-TTTTCATAAAA
6862904 TTTTAAAA
1 TTTTAAAA
6862912 AGTTTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (19 bp):
TTTTAAAATTTTCATAAAA
Found at i:6862918 original size:11 final size:10
Alignment explanation
Indices: 6862792--6862919 Score: 50
Period size: 11 Copynumber: 12.6 Consensus size: 10
6862782 ATTCTTTAAT
*
6862792 TTTTTATAAA
1 TTTTTAAAAA
*
6862802 -TTTAAAAAA
1 TTTTTAAAAA
*
6862811 ATTTTAAAAA
1 TTTTTAAAAA
* *
6862821 GTTTTTTAGAA
1 -TTTTTAAAAA
6862832 TTTATT-AAAA
1 TTT-TTAAAAA
* *
6862842 TATTTTATAAC
1 T-TTTTAAAAA
* *
6862853 TTTTTTAGAA
1 TTTTTAAAAA
*
6862863 TTGTTTTAAAA
1 TT-TTTAAAAA
* *
6862874 -TTTTCATAA
1 TTTTTAAAAA
6862883 TATTTT-AAAA
1 T-TTTTAAAAA
6862893 TTTTTGAAAAA
1 TTTTT-AAAAA
6862904 -TTTTAAAAA
1 TTTTTAAAAA
6862913 GTTTTTA
1 -TTTTTA
6862920 TAATTTTTTT
Statistics
Matches: 89, Mismatches: 17, Indels: 23
0.69 0.13 0.18
Matches are distributed among these distances:
9 22 0.25
10 33 0.37
11 34 0.38
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:6862925 original size:30 final size:29
Alignment explanation
Indices: 6862807--6862927 Score: 109
Period size: 30 Copynumber: 4.0 Consensus size: 29
6862797 ATAAATTTAA
6862807 AAAAATTTTAAAAAGTTTTTTAGAATTTATT
1 AAAAATTTTAAAAAG-TTTTTAGAATTT-TT
* **
6862838 AAAATATTTTATAACTTTTTTAGAATTGTTT
1 AAAA-ATTTTAAAAAGTTTTTAGAATT-TTT
* * * *
6862869 TAAAATTTTCATAA-TATTTTAAAATTTTT
1 AAAAATTTTAAAAAGT-TTTTAGAATTTTT
*
6862898 GAAAAATTTTAAAAAGTTTTTATAATTTTT
1 -AAAAATTTTAAAAAGTTTTTAGAATTTTT
6862928 TTTATTTTTA
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
29 4 0.06
30 38 0.53
31 21 0.29
32 9 0.12
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (29 bp):
AAAAATTTTAAAAAGTTTTTAGAATTTTT
Found at i:6862927 original size:10 final size:10
Alignment explanation
Indices: 6862789--6862928 Score: 77
Period size: 10 Copynumber: 13.8 Consensus size: 10
6862779 CATATTCTTT
6862789 AATTTTTTATA
1 AATTTTTTA-A
**
6862800 AA-TTTAAAA
1 AATTTTTTAA
* *
6862809 AAATTTTAAA
1 AATTTTTTAA
*
6862819 AAGTTTTTTAG
1 AA-TTTTTTAA
*
6862830 AATTTATTAA
1 AATTTTTTAA
*
6862840 AATATTTTATA
1 AATTTTTTA-A
* *
6862851 ACTTTTTTAG
1 AATTTTTTAA
6862861 AATTGTTTTAA
1 AATT-TTTTAA
* *
6862872 AA-TTTTCAT
1 AATTTTTTAA
*
6862881 AATATTTTAA
1 AATTTTTTAA
*
6862891 AATTTTTGAA
1 AATTTTTTAA
* *
6862901 AAATTTTAAA
1 AATTTTTTAA
* *
6862911 AAGTTTTTAT
1 AATTTTTTAA
6862921 AATTTTTT
1 AATTTTTT
6862929 TTATTTTTAG
Statistics
Matches: 96, Mismatches: 28, Indels: 11
0.71 0.21 0.08
Matches are distributed among these distances:
9 9 0.09
10 63 0.66
11 24 0.25
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.53
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:6862969 original size:18 final size:19
Alignment explanation
Indices: 6862933--6863011 Score: 90
Period size: 18 Copynumber: 4.2 Consensus size: 19
6862923 TTTTTTTTAT
*
6862933 TTTTAGAATTTTA-AAAAA
1 TTTTAGAATTTTATTAAAA
* *
6862951 ATTTAGAATTTTCTTAAAA
1 TTTTAGAATTTTATTAAAA
*
6862970 TTTTAGAACTTTTATGAAAA
1 TTTTAGAA-TTTTATTAAAA
*
6862990 TTTTA-AATTTTTTTAAAA
1 TTTTAGAATTTTATTAAAA
6863008 TTTT
1 TTTT
6863012 CTTATAACAA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
18 24 0.47
19 13 0.25
20 14 0.27
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.52
Consensus pattern (19 bp):
TTTTAGAATTTTATTAAAA
Found at i:6862973 original size:38 final size:39
Alignment explanation
Indices: 6862931--6863011 Score: 105
Period size: 38 Copynumber: 2.1 Consensus size: 39
6862921 AATTTTTTTT
6862931 ATTTTTAGAA-TTTTA-AAAAAATTTAGAATTTTCTTAAA
1 ATTTTTAGAACTTTTATAAAAAATTTA-AATTTTCTTAAA
* * *
6862969 A-TTTTAGAACTTTTATGAAAATTTTAAATTTTTTTAAA
1 ATTTTTAGAACTTTTATAAAAAATTTAAATTTTCTTAAA
6863007 ATTTT
1 ATTTT
6863012 CTTATAACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
37 8 0.22
38 18 0.49
39 11 0.30
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (39 bp):
ATTTTTAGAACTTTTATAAAAAATTTAAATTTTCTTAAA
Found at i:6873305 original size:13 final size:12
Alignment explanation
Indices: 6873289--6873322 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
6873279 ATATTTAAAA
6873289 TTTTATTTATATT
1 TTTTATTTA-ATT
6873302 TTTTATTTAATT
1 TTTTATTTAATT
6873314 TTATTATTT
1 TT-TTATTT
6873323 TTAGATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATTTAATT
Found at i:6873567 original size:38 final size:38
Alignment explanation
Indices: 6873520--6873598 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
6873510 GGCATCGGGA
* *
6873520 TTTTGCTTAGAGTTTAG-GATTTCACCTAAGATTTAAAG
1 TTTTACTTAGAGTTTCGAG-TTTCACCTAAGATTTAAAG
* * *
6873558 TTTTACTTAGAGTTTCGAGTTTCACTTAAGGTTTAAGG
1 TTTTACTTAGAGTTTCGAGTTTCACCTAAGATTTAAAG
6873596 TTT
1 TTT
6873599 CAACTAAGGT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 34 0.97
39 1 0.03
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.46
Consensus pattern (38 bp):
TTTTACTTAGAGTTTCGAGTTTCACCTAAGATTTAAAG
Found at i:6873833 original size:12 final size:11
Alignment explanation
Indices: 6873805--6873835 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
6873795 ACTTTTCTCT
6873805 TTTTTATTAAA
1 TTTTTATTAAA
6873816 TTTTTATTAAA
1 TTTTTATTAAA
6873827 TTATTTATT
1 TT-TTTATT
6873836 TACTATTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.68
12 6 0.32
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTATTAAA
Found at i:6881400 original size:32 final size:32
Alignment explanation
Indices: 6881359--6881424 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
6881349 ATATCTACAA
6881359 TGAGATGAGCTTCTAGAGACTTCTTTCCTCCT
1 TGAGATGAGCTTCTAGAGACTTCTTTCCTCCT
*
6881391 TGAGATGAGCTTTTAGAGACTTCTTTCCTCCT
1 TGAGATGAGCTTCTAGAGACTTCTTTCCTCCT
6881423 TG
1 TG
6881425 TTTCTGCACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.23, G:0.20, T:0.39
Consensus pattern (32 bp):
TGAGATGAGCTTCTAGAGACTTCTTTCCTCCT
Found at i:6882242 original size:26 final size:27
Alignment explanation
Indices: 6882210--6882269 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
6882200 TTTACTATTA
*
6882210 TTATTATTAAGCCAAGCTCTTTT-TTTT
1 TTATTATTAAGCCAAACT-TTTTATTTT
*
6882237 TT-TTATTAGGCCAAACTTTTTATTTT
1 TTATTATTAAGCCAAACTTTTTATTTT
6882263 TTATTAT
1 TTATTAT
6882270 ATTTTTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 4 0.14
26 19 0.66
27 6 0.21
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.58
Consensus pattern (27 bp):
TTATTATTAAGCCAAACTTTTTATTTT
Found at i:6883553 original size:18 final size:19
Alignment explanation
Indices: 6883532--6883570 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
6883522 TCTAAATTAA
6883532 AACCCTA-AATAAAATCCT
1 AACCCTAGAATAAAATCCT
*
6883550 AACCCTAGAATGAAATCCT
1 AACCCTAGAATAAAATCCT
6883569 AA
1 AA
6883571 TATGAAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.49, C:0.26, G:0.05, T:0.21
Consensus pattern (19 bp):
AACCCTAGAATAAAATCCT
Done.