Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 36 of 105
Found at i:6883579 original size:26 final size:26
Alignment explanation
Indices: 6883550--6883605 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
6883540 ATAAAATCCT
*
6883550 AACCCTAGAATGAAA-TCCTAATATGA
1 AACCCTAAAATGAAAGTCCTAA-ATGA
* * *
6883576 AACCTTAAAATTAAAGTCCTCAATGA
1 AACCCTAAAATGAAAGTCCTAAATGA
6883602 AACC
1 AACC
6883606 TTGGTAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.46, C:0.21, G:0.09, T:0.23
Consensus pattern (26 bp):
AACCCTAAAATGAAAGTCCTAAATGA
Found at i:6887245 original size:30 final size:30
Alignment explanation
Indices: 6887185--6887251 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
6887175 TAGCTTAAAC
* *
6887185 TTTTATACCAACATTGGTAGTATCTCTTCT
1 TTTTATACCAACATTGGCAGTATCTATTCT
* *
6887215 TTTTGTACCAACATTGGCATTAATC-ATTCT
1 TTTTATACCAACATTGGCAGT-ATCTATTCT
*
6887245 TCTTATA
1 TTTTATA
6887252 TAACACTACT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.46
Consensus pattern (30 bp):
TTTTATACCAACATTGGCAGTATCTATTCT
Found at i:6888109 original size:12 final size:12
Alignment explanation
Indices: 6888092--6888123 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
6888082 GTCTAACAAT
6888092 TCATGTTTCATG
1 TCATGTTTCATG
*
6888104 TCATGTCTCATG
1 TCATGTTTCATG
6888116 TCATGTTT
1 TCATGTTT
6888124 GACACGTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.50
Consensus pattern (12 bp):
TCATGTTTCATG
Found at i:6888344 original size:69 final size:69
Alignment explanation
Indices: 6888265--6888397 Score: 257
Period size: 69 Copynumber: 1.9 Consensus size: 69
6888255 ATTAATCCAT
6888265 TTAAAGATTAAAAAATAAAATAATAATGTATAGGACTAATATTAATATTTATATTGTATTTATAA
1 TTAAAGATTAAAAAATAAAATAATAATGTATAGGACTAATATTAATATTTATATTGTATTTATAA
6888330 ACTA
66 ACTA
*
6888334 TTAAAGATTAAAGAATAAAATAATAATGTATAGGACTAATATTAATATTTATATTGTATTTATA
1 TTAAAGATTAAAAAATAAAATAATAATGTATAGGACTAATATTAATATTTATATTGTATTTATA
6888398 TTATTAATAT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (69 bp):
TTAAAGATTAAAAAATAAAATAATAATGTATAGGACTAATATTAATATTTATATTGTATTTATAA
ACTA
Found at i:6890925 original size:2 final size:2
Alignment explanation
Indices: 6890918--6890950 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6890908 TCAATCATAT
6890918 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
6890951 TAATGGAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:6896835 original size:22 final size:20
Alignment explanation
Indices: 6896810--6896854 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
6896800 TCTTAATAAA
6896810 GATGGATTTATGTGAATATGTT
1 GATGGATTTAT-T-AATATGTT
* *
6896832 GATGTATTTATTAATTTGTT
1 GATGGATTTATTAATATGTT
6896852 GAT
1 GAT
6896855 AAAATTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 10 0.48
21 1 0.05
22 10 0.48
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (20 bp):
GATGGATTTATTAATATGTT
Found at i:6900231 original size:124 final size:124
Alignment explanation
Indices: 6900011--6900386 Score: 671
Period size: 124 Copynumber: 3.0 Consensus size: 124
6900001 TGATTTCTAG
* *
6900011 TTCAAATCTATTAATTTTTCATTGATACCCAAATCTGTTTTTGAATTTGTCAGTTCTGACCTACT
1 TTCAAATCTATTAATTTTTCATTGATACCCAAATCTGTTTTTAAATCTGTCAGTTCTGACCTACT
6900076 TGCAATTTTTTGATGATATCTTATTCAAATTTTACTTCTTTTTTTGTTCAAAGTTATTT
66 TGCAATTTTTTGATGATATCTTATTCAAATTTTACTTCTTTTTTTGTTCAAAGTTATTT
*
6900135 TTCAAATTTATTAATTTTTCATTGATACCCAAATCTGTTTTTAAATCTGTCAGTTCTGACCTACT
1 TTCAAATCTATTAATTTTTCATTGATACCCAAATCTGTTTTTAAATCTGTCAGTTCTGACCTACT
**
6900200 TGCAATTTTTTGATGATATCTTATTCAAATTTTACTTCTTTTTTCATTCAAAGTTATTT
66 TGCAATTTTTTGATGATATCTTATTCAAATTTTACTTCTTTTTTTGTTCAAAGTTATTT
* * *
6900259 TTCAAATCTATTAATTTTTCATTGATACCCAAATCTGTTTTTTAATCTATCAGTTTTGACCTACT
1 TTCAAATCTATTAATTTTTCATTGATACCCAAATCTGTTTTTAAATCTGTCAGTTCTGACCTACT
*
6900324 TGCAATTTTTTTATGATATCTTATTCAAATTTTACTTCTTTTTTTGTTCAAAGTTATTT
66 TGCAATTTTTTGATGATATCTTATTCAAATTTTACTTCTTTTTTTGTTCAAAGTTATTT
6900383 TTCA
1 TTCA
6900387 TAGTTTCCTA
Statistics
Matches: 240, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 240 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (124 bp):
TTCAAATCTATTAATTTTTCATTGATACCCAAATCTGTTTTTAAATCTGTCAGTTCTGACCTACT
TGCAATTTTTTGATGATATCTTATTCAAATTTTACTTCTTTTTTTGTTCAAAGTTATTT
Found at i:6904549 original size:19 final size:19
Alignment explanation
Indices: 6904525--6904566 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
6904515 TTGAGTAAAA
6904525 CCTTTGGCAACAAGTCTAG
1 CCTTTGGCAACAAGTCTAG
*
6904544 CCTTTGGCAATAAGTCTAG
1 CCTTTGGCAACAAGTCTAG
6904563 CCTT
1 CCTT
6904567 GTTTCGATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (19 bp):
CCTTTGGCAACAAGTCTAG
Found at i:6908422 original size:26 final size:30
Alignment explanation
Indices: 6908391--6908458 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 30
6908381 TGTAAGTATT
6908391 ATATTA-ATTAATAAA-TTTAT-AA-TTAA
1 ATATTAGATTAATAAATTTTATAAATTTAA
* *
6908417 ATATTAGACTAA-AAATTTTTTAAATTTAA
1 ATATTAGATTAATAAATTTTATAAATTTAA
*
6908446 ATATTATATTAAT
1 ATATTAGATTAAT
6908459 TTGGTTTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
26 9 0.27
27 8 0.24
28 2 0.06
29 14 0.42
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
ATATTAGATTAATAAATTTTATAAATTTAA
Found at i:6909307 original size:125 final size:125
Alignment explanation
Indices: 6909012--6909308 Score: 323
Period size: 125 Copynumber: 2.4 Consensus size: 125
6909002 ATTCAATGTA
* * * **
6909012 TTTTTG-GTCAAAAACACTTTTAATAATTCACTCATAAAAATTTAAGGGGATTATTCAAGGTATT
1 TTTTTGAG-CAAAAACACTTTGAATAATTCACTCATAAAAATTGAAAGGGATTATTCAAAATATT
* * * *
6909076 TTTTACCAAAAACACCTTCAATAACCCCATTCAACTTTTTGTAAAGGATTATCCAATGCAG
65 TTTTACCAAAAACACCTTCAATAACCCCATGCAACTTTTTATAAAGGATTATCAAAGGCAG
** * *
6909137 TTTTTGAGCAAAAATGCATTGAATAATT-ATCTCATAAAATTTGAAAGGGATTATTCAAAATATT
1 TTTTTGAGCAAAAACACTTTGAATAATTCA-CTCATAAAAATTGAAAGGGATTATTCAAAATATT
* * ** * * *
6909201 TTTTGCCTAAAATGCCTTCAATAATCCCATGCAATTTTTTATAAAGGATTATTAAAGGCA-
65 TTTTACCAAAAACACCTTCAATAACCCCATGCAACTTTTTATAAAGGATTATCAAAGGCAG
* * *
6909261 TTTTCT-ACGCTAAAACACTTTGAATAATTCCCTCATAAAAAATGAAAG
1 TTTT-TGA-GCAAAAACACTTTGAATAATTCACTCATAAAAATTGAAAG
6909309 ATTATTAAAG
Statistics
Matches: 140, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
124 6 0.04
125 133 0.95
126 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.35
Consensus pattern (125 bp):
TTTTTGAGCAAAAACACTTTGAATAATTCACTCATAAAAATTGAAAGGGATTATTCAAAATATTT
TTTACCAAAAACACCTTCAATAACCCCATGCAACTTTTTATAAAGGATTATCAAAGGCAG
Found at i:6909362 original size:61 final size:61
Alignment explanation
Indices: 6909247--6909361 Score: 150
Period size: 61 Copynumber: 1.9 Consensus size: 61
6909237 TTTTATAAAG
* *
6909247 GATTATTAAAGGCATTTTCTACGCTAAAACACTTTGAATAATTCCCTCATAAAAAATGAAA
1 GATTATTAAAGGCATTTTCTACGCTAAAACACCTTCAATAATTCCCTCATAAAAAATGAAA
6909308 GATTATTAAAGGCATTTT-TA-G-TAGAAAACACCTTCAATAA-T-CCTCTATAAAAAA
1 GATTATTAAAGGCATTTTCTACGCT--AAAACACCTTCAATAATTCCCTC-ATAAAAAA
6909362 ATTTTGGGGA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
58 5 0.10
59 10 0.20
60 16 0.33
61 18 0.37
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (61 bp):
GATTATTAAAGGCATTTTCTACGCTAAAACACCTTCAATAATTCCCTCATAAAAAATGAAA
Found at i:6909408 original size:21 final size:21
Alignment explanation
Indices: 6909362--6909402 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
6909352 CTATAAAAAA
*
6909362 ATTTTGGGGATTATTGAAGGC
1 ATTTTGAGGATTATTGAAGGC
6909383 ATTTTGAGGATTATTGAAGG
1 ATTTTGAGGATTATTGAAGG
6909403 TGTTTTTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.32, T:0.39
Consensus pattern (21 bp):
ATTTTGAGGATTATTGAAGGC
Found at i:6910401 original size:25 final size:24
Alignment explanation
Indices: 6910326--6910402 Score: 59
Period size: 25 Copynumber: 3.2 Consensus size: 24
6910316 CATTTGTGAA
*
6910326 TATTTATTATTATTATTGCATTAAC
1 TATTTATTATT-TTATTACATTAAC
* ** * * *
6910351 TATGTCCTATTAT-TTAGATGAA-
1 TATTTATTATTTTATTACATTAAC
6910373 TATTTATTATTCTTATTACATTAAC
1 TATTTATTATT-TTATTACATTAAC
6910398 TATTT
1 TATTT
6910403 CCCCATCTTT
Statistics
Matches: 36, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
22 8 0.22
23 7 0.19
24 8 0.22
25 13 0.36
ACGTcount: A:0.31, C:0.09, G:0.05, T:0.55
Consensus pattern (24 bp):
TATTTATTATTTTATTACATTAAC
Found at i:6914778 original size:15 final size:15
Alignment explanation
Indices: 6914758--6914793 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
6914748 AATGTAACTA
*
6914758 TTTATCTATGTTTAT
1 TTTATCGATGTTTAT
*
6914773 TTTATCGATGTTTGT
1 TTTATCGATGTTTAT
6914788 TTTATC
1 TTTATC
6914794 AGACTTGGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.17, C:0.08, G:0.11, T:0.64
Consensus pattern (15 bp):
TTTATCGATGTTTAT
Found at i:6915155 original size:55 final size:55
Alignment explanation
Indices: 6915070--6915213 Score: 157
Period size: 55 Copynumber: 2.7 Consensus size: 55
6915060 GTCAATAAAA
* * * *
6915070 TATAA-TAA-AAAATTAAAACATATAAGTCTATACTGGGAATATCTAACCGTTAG
1 TATAAGTAAGAAAATTAAAAAATACAAGTCTATACTGAGAATATCTAACCGTGAG
** * * * * * *
6915123 TATAAGTAAGAAAATTAAAGTATACAATTCTATACTGATAGTCTCTAATCGTGGG
1 TATAAGTAAGAAAATTAAAAAATACAAGTCTATACTGAGAATATCTAACCGTGAG
*
6915178 TATAGGTAAGAAAATTAAAAAATACAAGTCTATACT
1 TATAAGTAAGAAAATTAAAAAATACAAGTCTATACT
6915214 AACGGATGCT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
53 5 0.07
54 3 0.04
55 66 0.89
ACGTcount: A:0.46, C:0.10, G:0.13, T:0.31
Consensus pattern (55 bp):
TATAAGTAAGAAAATTAAAAAATACAAGTCTATACTGAGAATATCTAACCGTGAG
Found at i:6915391 original size:159 final size:159
Alignment explanation
Indices: 6915178--6915479 Score: 430
Period size: 159 Copynumber: 1.9 Consensus size: 159
6915168 TAATCGTGGG
* * * * *
6915178 TATAGGTAAGAAAATTAAAAAATACAAGTCTATACTAACGGATGCTAAGTGTCAGTATAGATAAG
1 TATAGGTAAGAAAATTAAAAAATACAAATATATACTAACAGATGCTAAGCGTCAGTATAGATAAA
* *
6915243 AAAAATTACAAGTC-ATACTGATAGGCATTAACCATTGGTATAGGTAAGAAAAATTAAAACATAT
66 AAAAATTA-AAGTCTATACTAATAGGCATTAACCATCGGTATAGGTAAGAAAAATTAAAACATAT
*
6915307 ATGTCTATACTGATGAGCGTTAGCCGTTGA
130 AAGTCTATACTGATGAGCGTTAGCCGTTGA
* * *
6915337 TATAGGTGAGAAAATTAAAACATACAAATATATACTAACAG-T-CTTTAAGCGTCAGTATAGGTA
1 TATAGGTAAGAAAATTAAAAAATACAAATATATACTAACAGATGC--TAAGCGTCAGTATAGATA
* * *
6915400 AAAAAAATTAAAGTCTATACTAATGGGCATTAACCGTCGGTATAGGTAAGAAAAATTAAAATATA
64 AAAAAAATTAAAGTCTATACTAATAGGCATTAACCATCGGTATAGGTAAGAAAAATTAAAACATA
6915465 TAAGTCTATACTGAT
129 TAAGTCTATACTGAT
6915480 AGGTGTTAAC
Statistics
Matches: 126, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
157 1 0.01
158 6 0.05
159 119 0.94
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (159 bp):
TATAGGTAAGAAAATTAAAAAATACAAATATATACTAACAGATGCTAAGCGTCAGTATAGATAAA
AAAAATTAAAGTCTATACTAATAGGCATTAACCATCGGTATAGGTAAGAAAAATTAAAACATATA
AGTCTATACTGATGAGCGTTAGCCGTTGA
Found at i:6916075 original size:27 final size:24
Alignment explanation
Indices: 6916029--6916086 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 24
6916019 TTTTTAATCA
*
6916029 ATATAT-TATATATTCTTTAATAT
1 ATATATATATATATTCTTTAAAAT
6916052 ATATATATATATATTCATTATTAAAAT
1 ATATATATATATATTC--T-TTAAAAT
6916079 ATATATAT
1 ATATATAT
6916087 TCATTAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 6 0.20
24 9 0.30
26 1 0.03
27 14 0.47
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (24 bp):
ATATATATATATATTCTTTAAAAT
Found at i:6916082 original size:21 final size:23
Alignment explanation
Indices: 6916056--6916116 Score: 83
Period size: 21 Copynumber: 2.7 Consensus size: 23
6916046 TAATATATAT
6916056 ATATATATATTCATTAT-TAA-A
1 ATATATATATTCATTATCTAATA
6916077 ATATATATATTCATTAATCTAATA
1 ATATATATATTCATT-ATCTAATA
*
6916101 A-ATATTTATTCATTAT
1 ATATATATATTCATTAT
6916117 GTTATACGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 15 0.42
24 2 0.06
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (23 bp):
ATATATATATTCATTATCTAATA
Found at i:6916105 original size:23 final size:23
Alignment explanation
Indices: 6916022--6916115 Score: 88
Period size: 23 Copynumber: 4.1 Consensus size: 23
6916012 GTTATCTTTT
* *
6916022 TTAATC-AATATATTATATATTCT
1 TTAATCTAATA-AATATATATTCA
* *
6916045 TTAATATATATATATATATATTCA
1 TTAATCTA-ATAAATATATATTCA
6916069 TT-AT-TAA-AATATATATATTCA
1 TTAATCTAATAA-ATATATATTCA
*
6916090 TTAATCTAATAAATATTTATTCA
1 TTAATCTAATAAATATATATTCA
6916113 TTA
1 TTA
6916116 TGTTATACGT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
20 1 0.02
21 14 0.24
22 4 0.07
23 23 0.39
24 14 0.24
25 3 0.05
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (23 bp):
TTAATCTAATAAATATATATTCA
Found at i:6918920 original size:4 final size:4
Alignment explanation
Indices: 6918913--6918943 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
6918903 AAAATAAGCC
6918913 AATT AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AATT AAT
6918944 CTTCTTAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:6926902 original size:3 final size:3
Alignment explanation
Indices: 6926882--6926929 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
6926872 TTGAGAGTCC
* * *
6926882 ATG ATTG ATG ATG GTG ATG ATG GTG ATG ATG ATG ACG ATG ATG A-G
1 ATG A-TG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
6926927 ATG
1 ATG
6926930 TAACAAAGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
2 2 0.05
3 32 0.86
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.38, T:0.31
Consensus pattern (3 bp):
ATG
Found at i:6931629 original size:19 final size:19
Alignment explanation
Indices: 6931605--6931647 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
6931595 ATTCTTCTTG
6931605 AAAAGAAAATAATA-AAATA
1 AAAAGAAAATAA-AGAAATA
*
6931624 AAAAG-ATATAAAGAAATA
1 AAAAGAAAATAAAGAAATA
6931642 AAAAGA
1 AAAAGA
6931648 TGAAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 15 0.71
19 5 0.24
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (19 bp):
AAAAGAAAATAAAGAAATA
Found at i:6933316 original size:22 final size:22
Alignment explanation
Indices: 6933269--6933364 Score: 86
Period size: 23 Copynumber: 4.2 Consensus size: 22
6933259 TTTTAAATAA
* *
6933269 GAATCTTTGAACTTTTCGAATGT
1 GAATCTTTGAAATTTTAG-ATGT
6933292 GAATCTTTGAAATTTTAGATGT
1 GAATCTTTGAAATTTTAGATGT
* *
6933314 GAATCTGT-AAAGTTTTTAAAATGT
1 GAATCTTTGAAA--TTTT-AGATGT
* *
6933338 GAATATTTGAAATTTTGGATGT
1 GAATCTTTGAAATTTTAGATGT
*
6933360 AAATC
1 GAATC
6933365 CCAAAATTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 9
0.76 0.13 0.12
Matches are distributed among these distances:
21 3 0.05
22 18 0.31
23 24 0.41
24 11 0.19
25 3 0.05
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.43
Consensus pattern (22 bp):
GAATCTTTGAAATTTTAGATGT
Found at i:6933337 original size:46 final size:46
Alignment explanation
Indices: 6933287--6933437 Score: 144
Period size: 46 Copynumber: 3.3 Consensus size: 46
6933277 GAACTTTTCG
*
6933287 AATGTGAATCTTTGAAATTTTAGATGTGAATCTGTAAAGTTTTTAA
1 AATGTGAATCTTTGAAATTTTAGATGTGAATCTCTAAAGTTTTTAA
* * * * * * **
6933333 AATGTGAATATTTGAAATTTTGGATGTAAATCCCAAAATTTTTTTG
1 AATGTGAATCTTTGAAATTTTAGATGTGAATCTCTAAAGTTTTTAA
* * * * * *
6933379 AATGAGAATCTTT-AAATTGTAGATATGAATATCT-AAGGTTTTCA
1 AATGTGAATCTTTGAAATTTTAGATGTGAATCTCTAAAGTTTTTAA
*
6933423 CATGTGAATCTTTGA
1 AATGTGAATCTTTGA
6933438 TTCCTTGATG
Statistics
Matches: 80, Mismatches: 24, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
44 17 0.21
45 15 0.19
46 48 0.60
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (46 bp):
AATGTGAATCTTTGAAATTTTAGATGTGAATCTCTAAAGTTTTTAA
Found at i:6933353 original size:23 final size:22
Alignment explanation
Indices: 6933259--6933353 Score: 84
Period size: 23 Copynumber: 4.2 Consensus size: 22
6933249 TTTGTAAAAT
** *
6933259 TTTTAAATAAGAATCTTTGAAC
1 TTTTAAATGTGAATCTTTGAAA
*
6933281 TTTTCGAATGTGAATCTTTGAAA
1 TTTT-AAATGTGAATCTTTGAAA
* *
6933304 TTTTAGATGTGAATCTGT-AAA
1 TTTTAAATGTGAATCTTTGAAA
*
6933325 GTTTTTAAAATGTGAATATTTGAAA
1 --TTTT-AAATGTGAATCTTTGAAA
6933350 TTTT
1 TTTT
6933354 GGATGTAAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
21 3 0.05
22 15 0.26
23 26 0.45
24 11 0.19
25 3 0.05
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (22 bp):
TTTTAAATGTGAATCTTTGAAA
Found at i:6933678 original size:43 final size:43
Alignment explanation
Indices: 6933539--6933873 Score: 173
Period size: 43 Copynumber: 7.6 Consensus size: 43
6933529 TTTGATCTCA
* * * *
6933539 TTTTAT-ATTTCTTAAAAGTTGTTGAGCCTTTGATGCGACGAGTC
1 TTTTATAATTT-TTCAAAGTTGTTGAGCCTCTGATGAGAGGAG-C
* ** * ** **
6933583 TTTTATATTTTTTTTCAAAAGTCATTGTGTTTCTGATGAGATAAGC
1 TTTTATA--ATTTTTC-AAAGTTGTTGAGCCTCTGATGAGAGGAGC
*
6933629 ATTTTATAACTTTT-AAAGTTGTTGAGCCTCTGATGAGAGGAGC
1 -TTTTATAATTTTTCAAAGTTGTTGAGCCTCTGATGAGAGGAGC
* * ** * **
6933672 TATTTATATTTTTTCAAAAGACT-AAGAAGCCTCTAATGAGAATAGC
1 T-TTTATAATTTTTC-AAAG-TTGTTG-AGCCTCTGATGAGAGGAGC
* * * *
6933718 TTATTA-AA-CTTTCAAAGTTGTTGAGCCTTTGATGAAAGGAAC
1 TT-TTATAATTTTTCAAAGTTGTTGAGCCTCTGATGAGAGGAGC
* * * ** *
6933760 TTTTTTTAATTTTTTCAAAGTTATTGAGCCTCTAATGA-AATATC
1 -TTTTATAA-TTTTTCAAAGTTGTTGAGCCTCTGATGAGAGGAGC
* * * *
6933804 TTTT-TAATTTTATAAAAGTTGTTAAGCCTCTTATGAGTGGAGCC
1 TTTTATAATTTT-TCAAAGTTGTTGAGCCTCTGATGAGAGGAG-C
6933848 TTTTAT-ATTTTTCAAAGTTGTTGAGC
1 TTTTATAATTTTTCAAAGTTGTTGAGC
6933874 TTCTATTTAG
Statistics
Matches: 214, Mismatches: 57, Indels: 41
0.69 0.18 0.13
Matches are distributed among these distances:
41 4 0.02
42 40 0.19
43 59 0.28
44 23 0.11
45 35 0.16
46 24 0.11
47 29 0.14
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (43 bp):
TTTTATAATTTTTCAAAGTTGTTGAGCCTCTGATGAGAGGAGC
Found at i:6933744 original size:88 final size:85
Alignment explanation
Indices: 6933550--6933863 Score: 242
Period size: 88 Copynumber: 3.6 Consensus size: 85
6933540 TTTATATTTC
* * * * * **
6933550 TTAAAAGTTGTTGAGCCTTTGATGCGACGAGTCTTTTATATTTTTTTTCAAAAG-TCATTGTGTT
1 TTAAAAGTTGTTGAGCCTCTGATGAGAGGAG-CTTTTATA--TTTTTTCAAAAGCT-ATAGAGCC
* *
6933614 TCTGATGAGATAAGCATT-TTATAACT
62 TCTAATGAAAT-AGC-TTATTA-AACT
*
6933640 TTTAAAGTTGTTGAGCCTCTGATGAGAGGAGCTATTTATATTTTTTCAAAAGACTA-AGAAGCCT
1 TTAAAAGTTGTTGAGCCTCTGATGAGAGGAGCT-TTTATATTTTTTCAAAAG-CTATAG-AGCCT
6933704 CTAATGAGAATAGCTTATTAAACT
63 CTAATGA-AATAGCTTATTAAACT
* * * * * * *
6933728 TTCAAAGTTGTTGAGCCTTTGATGAAAGGAACTTTTTTTAATTTTTTC-AAAGTTATTGAGCCTC
1 TTAAAAGTTGTTGAGCCTCTGATGAGAGGAGC-TTTTAT-ATTTTTTCAAAAGCTATAGAGCCTC
* * **
6933792 TAATGAAATATCTTTTTAATTT
64 TAATGAAATAGCTTATTAAACT
* * *
6933814 TATAAAAGTTGTTAAGCCTCTTATGAGTGGAGCCTTTTATA-TTTTTCAAA
1 T-TAAAAGTTGTTGAGCCTCTGATGAGAGGAG-CTTTTATATTTTTTCAAA
6933864 GTTGTTGAGC
Statistics
Matches: 183, Mismatches: 29, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
85 6 0.03
86 16 0.09
87 42 0.23
88 57 0.31
89 26 0.14
90 36 0.20
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (85 bp):
TTAAAAGTTGTTGAGCCTCTGATGAGAGGAGCTTTTATATTTTTTCAAAAGCTATAGAGCCTCTA
ATGAAATAGCTTATTAAACT
Found at i:6933778 original size:45 final size:44
Alignment explanation
Indices: 6933727--6933873 Score: 124
Period size: 42 Copynumber: 3.4 Consensus size: 44
6933717 CTTATTAAAC
6933727 TTTCAAAGTTGTTGAGCCTTTGATGAAAGGAACTTTTTTTAATTT
1 TTTCAAAGTTGTTGAGCCTTT-ATGAAAGGAACTTTTTTTAATTT
* * * *
6933772 TTTCAAAGTTATTGAGCCTCTAATGAAA--TA-TCTTTTTAATTT
1 TTTCAAAGTTGTTGAGCCT-TTATGAAAGGAACTTTTTTTAATTT
* * * ** * * *
6933814 TATAAAAGTTGTTAAGCCTCTTATGAGTGGAGCCTTTTAT-A-TT
1 TTTCAAAGTTGTTGAGCCT-TTATGAAAGGAACTTTTTTTAATTT
6933857 TTTCAAAGTTGTTGAGC
1 TTTCAAAGTTGTTGAGC
6933874 TTCTATTTAG
Statistics
Matches: 79, Mismatches: 19, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
42 32 0.41
43 17 0.22
44 1 0.01
45 28 0.35
46 1 0.01
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (44 bp):
TTTCAAAGTTGTTGAGCCTTTATGAAAGGAACTTTTTTTAATTT
Found at i:6933832 original size:87 final size:84
Alignment explanation
Indices: 6933630--6933947 Score: 230
Period size: 87 Copynumber: 3.6 Consensus size: 84
6933620 GAGATAAGCA
* * * * * * *
6933630 TTTTATAACTTTTAAAGTTGTTGAGCCTCTGATGAGAGGAGCTATTTAT-ATTTTTTCAAAAGAC
1 TTTT-TAATTTTTAAAGTTGTTAAGCCT-TTATGAAAGGAGCTTTTTTTAATTTTTTC-AAAG-T
*
6933694 TA-AGAAGCCTCTAATGAGAATAGC
62 TATTG-AGCCTCTAATGA-AATAGC
* * * * *
6933718 TTATTAAACTTTCAAAGTTGTTGAGCCTTTGATGAAAGGAACTTTTTTTAATTTTTTCAAAGTTA
1 TT-TTTAATTTTTAAAGTTGTTAAGCCTTT-ATGAAAGGAGCTTTTTTTAATTTTTTCAAAGTTA
*
6933783 TTGAGCCTCTAATGAAATATC
64 TTGAGCCTCTAATGAAATAGC
** * *
6933804 TTTTTAATTTTATAAAAGTTGTTAAGCCTCTTATGAGTGGAGCCTTTTAT-A-TTTTTCAAAGTT
1 TTTTTAATTTT-T-AAAGTTGTTAAGCCT-TTATGAAAGGAGCTTTTTTTAATTTTTTCAAAGTT
* * * * *
6933867 GTTGAGCTTCTATTTAGATAAGC
63 ATTGAGCCTCTAATGAAAT-AGC
* * *
6933890 CTTTTATATTTCTTAAAGTGGTTAAGCCTTTAATGAAAAGAGCTTTTTTTTAATTTTT
1 TTTTTA-ATTT-TTAAAGTTGTTAAGCCTTT-ATGAAAGGAGC-TTTTTTTAATTTTT
6933948 CTGAAGTTGT
Statistics
Matches: 184, Mismatches: 32, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
85 35 0.19
86 37 0.20
87 52 0.28
88 46 0.25
89 14 0.08
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (84 bp):
TTTTTAATTTTTAAAGTTGTTAAGCCTTTATGAAAGGAGCTTTTTTTAATTTTTTCAAAGTTATT
GAGCCTCTAATGAAATAGC
Found at i:6935069 original size:10 final size:11
Alignment explanation
Indices: 6935035--6935076 Score: 52
Period size: 10 Copynumber: 3.9 Consensus size: 11
6935025 TCTCTTTTCT
6935035 ATTTTCATTTG
1 ATTTTCATTTG
*
6935046 ATTTTCCTTTTG
1 ATTTT-CATTTG
6935058 ATTTT-ATTTG
1 ATTTTCATTTG
6935068 ATTTT-ATTT
1 ATTTTCATTT
6935077 ACTTTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 13 0.46
11 5 0.18
12 10 0.36
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.69
Consensus pattern (11 bp):
ATTTTCATTTG
Found at i:6935112 original size:14 final size:14
Alignment explanation
Indices: 6935095--6935129 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
6935085 ATTTTTTTCT
6935095 TTTATTTTGATTAA
1 TTTATTTTGATTAA
*
6935109 TTTATGTTGATTAA
1 TTTATTTTGATTAA
*
6935123 GTTATTT
1 TTTATTT
6935130 ATTGTTTTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (14 bp):
TTTATTTTGATTAA
Found at i:6936317 original size:20 final size:20
Alignment explanation
Indices: 6936300--6936358 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 20
6936290 ATATCATACA
6936300 ATATCATGCAATAACATAAT
1 ATATCATGCAATAACATAAT
*
6936320 ATATCAT---ATAATTATAAT
1 ATATCATGCAATAA-CATAAT
*
6936338 ATAATCATGCAATAATATAAT
1 AT-ATCATGCAATAACATAAT
6936359 GTAATATATA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
17 4 0.12
18 7 0.21
19 5 0.15
20 7 0.21
21 6 0.18
22 4 0.12
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (20 bp):
ATATCATGCAATAACATAAT
Found at i:6936390 original size:21 final size:21
Alignment explanation
Indices: 6936364--6936407 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
6936354 ATAATGTAAT
*
6936364 ATATAAATTACCATACAATTA
1 ATATAAAATACCATACAATTA
* *
6936385 ATATAAAATATCATGCAATTA
1 ATATAAAATACCATACAATTA
6936406 AT
1 AT
6936408 TAATAAACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (21 bp):
ATATAAAATACCATACAATTA
Found at i:6936501 original size:3 final size:3
Alignment explanation
Indices: 6936493--6936534 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
6936483 CTTTTAAATT
6936493 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6936535 CATAAAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6936549 original size:8 final size:8
Alignment explanation
Indices: 6936538--6936623 Score: 108
Period size: 8 Copynumber: 11.0 Consensus size: 8
6936528 ATAATAACAT
6936538 AAAAAAAG
1 AAAAAAAG
6936546 AAAAAAAG
1 AAAAAAAG
6936554 AAAAAAAG
1 AAAAAAAG
6936562 AAAAAAAG
1 AAAAAAAG
6936570 AAAAAAAG
1 AAAAAAAG
*
6936578 -AAAACAG
1 AAAAAAAG
6936585 -AAAAAAG
1 AAAAAAAG
6936592 -AAAAAAG
1 AAAAAAAG
*
6936599 AAAAAAGG
1 AAAAAAAG
6936607 AAAAGAAA-
1 AAAA-AAAG
6936615 ATAAAAAAG
1 A-AAAAAAG
6936624 GAGAAACCTG
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
7 19 0.27
8 46 0.66
9 5 0.07
ACGTcount: A:0.84, C:0.01, G:0.14, T:0.01
Consensus pattern (8 bp):
AAAAAAAG
Found at i:6936622 original size:1 final size:1
Alignment explanation
Indices: 6936538--6936604 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
6936528 ATAATAACAT
* * * * * * * * *
6936538 AAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAACAGAAAAAAGAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6936603 AA
1 AA
6936605 GGAAAAGAAA
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.87, C:0.01, G:0.12, T:0.00
Consensus pattern (1 bp):
A
Found at i:6938243 original size:17 final size:17
Alignment explanation
Indices: 6938221--6938324 Score: 84
Period size: 17 Copynumber: 6.0 Consensus size: 17
6938211 TCAAGTTTCT
6938221 CAAAGGTTCTAGATTCA
1 CAAAGGTTCTAGATTCA
*
6938238 CAAAGGTTCTAAGTTTCA
1 CAAAGGTTCT-AGATTCA
* * *
6938256 TAGAGATTCTAGATTCA
1 CAAAGGTTCTAGATTCA
* * *
6938273 C-AAGATTTCAAGTTTCA
1 CAAAG-GTTCTAGATTCA
* *
6938290 CAAAGGTTTTAGATTCG
1 CAAAGGTTCTAGATTCA
*
6938307 CAAAGGTTTTTAGATTCA
1 CAAAGG-TTCTAGATTCA
6938325 TAAGAGTTTT
Statistics
Matches: 67, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
16 2 0.03
17 39 0.58
18 26 0.39
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (17 bp):
CAAAGGTTCTAGATTCA
Found at i:6938266 original size:35 final size:35
Alignment explanation
Indices: 6938175--6938315 Score: 124
Period size: 35 Copynumber: 4.0 Consensus size: 35
6938165 GCAAGAATTC
* * * * *
6938175 CAAGTTTCACAAAGATTTCAAAAGTTCATAAATGATT
1 CAAGTTTCACAAAGA-TTCTAGA-TTCACAAAGGTTT
* *
6938212 CAAGTTTCTCAAAGGTTCTAGATTCACAAAGG-TT
1 CAAGTTTCACAAAGATTCTAGATTCACAAAGGTTT
* * *
6938246 CTAAGTTTCATAGAGATTCTAGATTCAC-AAGATTT
1 C-AAGTTTCACAAAGATTCTAGATTCACAAAGGTTT
* * *
6938281 CAAGTTTCACAAAGGTTTTAGATTCGCAAAGGTTT
1 CAAGTTTCACAAAGATTCTAGATTCACAAAGGTTT
6938316 TTAGATTCAT
Statistics
Matches: 84, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
34 27 0.32
35 39 0.46
36 5 0.06
37 13 0.15
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (35 bp):
CAAGTTTCACAAAGATTCTAGATTCACAAAGGTTT
Found at i:6938319 original size:18 final size:17
Alignment explanation
Indices: 6938290--6938323 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
6938280 TCAAGTTTCA
6938290 CAAAGGTTTTAGATTCG
1 CAAAGGTTTTAGATTCG
6938307 CAAAGGTTTTTAGATTC
1 CAAAGG-TTTTAGATTC
6938324 ATAAGAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (17 bp):
CAAAGGTTTTAGATTCG
Found at i:6938325 original size:69 final size:70
Alignment explanation
Indices: 6938210--6938357 Score: 183
Period size: 69 Copynumber: 2.1 Consensus size: 70
6938200 TCATAAATGA
* *
6938210 TTCAAGTTTCTCAAAGGTTCTAGATTCACAAAGGTTCTAAGTTTCAT-AGAGATTCTAGATTCAC
1 TTCAAGTTTCACAAAGGTTCTAGATTCACAAAGGTTCTAAGATTCATAAGAG-TTCTAGATTCAC
6938274 AAG-AT
65 AAGAAT
* * * * * * *
6938279 TTCAAGTTTCACAAAGGTTTTAGATTCGCAAAGGTTTTTAGATTCATAAGAGTTTTAGGTTCTCA
1 TTCAAGTTTCACAAAGGTTCTAGATTCACAAAGGTTCTAAGATTCATAAGAGTTCTAGATTCACA
6938344 AGAAT
66 AGAAT
*
6938349 TCCAAGTTT
1 TTCAAGTTT
6938358 GCAAGAATTT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
69 53 0.79
70 14 0.21
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
TTCAAGTTTCACAAAGGTTCTAGATTCACAAAGGTTCTAAGATTCATAAGAGTTCTAGATTCACA
AGAAT
Found at i:6938715 original size:22 final size:22
Alignment explanation
Indices: 6938655--6938766 Score: 102
Period size: 22 Copynumber: 5.0 Consensus size: 22
6938645 AGGTTTACAA
*
6938655 CCAAAA-TTCAAAGATTCTCATT
1 CCAAAATTTCAAAGATTCACA-T
* *
6938677 CGAAAAATTT-AAGGATTCACAT
1 C-CAAAATTTCAAAGATTCACAT
6938699 CCAAAATTTCAAAGATTCACATTT
1 CCAAAATTTCAAAGATTCACA--T
** * *
6938723 AAAAAATTTTAGAGATTCACAT
1 CCAAAATTTCAAAGATTCACAT
*
6938745 CCAAAGTTTCAAAGATTCACAT
1 CCAAAATTTCAAAGATTCACAT
6938767 TTGAAAAATT
Statistics
Matches: 71, Mismatches: 14, Indels: 10
0.75 0.15 0.11
Matches are distributed among these distances:
21 7 0.10
22 31 0.44
23 13 0.18
24 20 0.28
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (22 bp):
CCAAAATTTCAAAGATTCACAT
Found at i:6938755 original size:46 final size:45
Alignment explanation
Indices: 6938655--6938897 Score: 208
Period size: 45 Copynumber: 5.4 Consensus size: 45
6938645 AGGTTTACAA
* * *
6938655 CCAAAA-TTCAAAGATTCTCATTCGAAAAATTTAAGGATTCACAT
1 CCAAAATTTCAAAGATTCACATTTGAAAAATTTTAGGATTCACAT
*
6938699 CCAAAATTTCAAAGATTCACATTTAAAAAATTTTAGAGATTCACAT
1 CCAAAATTTCAAAGATTCACATTTGAAAAATTTTAG-GATTCACAT
* *
6938745 CCAAAGTTTCAAAGATTCACATTTGAAAAA--TTAGAGATT-AGAT
1 CCAAAATTTCAAAGATTCACATTTGAAAAATTTTAG-GATTCACAT
* * ** * * *
6938788 CCAAAGTTTAAAAGATTC-TTTTTTAAAAACTTTATGGCTTCACAT
1 CCAAAATTTCAAAGATTCACATTTGAAAAATTTTA-GGATTCACAT
* ** * ** * *
6938833 CCAAAATTTTAAAGATTCTTATTGGAAAAAAAATTAGGGTTTCGCAT
1 CCAAAATTTCAAAGATTCACATTTG-AAAAATTTTA-GGATTCACAT
*
6938880 CCAAAATTTTAAAGATTC
1 CCAAAATTTCAAAGATTC
6938898 TGATTCGAAA
Statistics
Matches: 168, Mismatches: 23, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
42 8 0.05
43 20 0.12
44 21 0.12
45 45 0.27
46 40 0.24
47 34 0.20
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.33
Consensus pattern (45 bp):
CCAAAATTTCAAAGATTCACATTTGAAAAATTTTAGGATTCACAT
Found at i:6938782 original size:22 final size:22
Alignment explanation
Indices: 6938711--6938783 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
6938701 AAAATTTCAA
6938711 AGATTCACATTTAAAAAATTTTAG
1 AGATTCACATTTAAAAAA--TTAG
** ** *
6938735 AGATTCACA-TCCAAAGTTTCAA
1 AGATTCACATTTAAAAAATT-AG
*
6938757 AGATTCACATTTGAAAAATTAG
1 AGATTCACATTTAAAAAATTAG
6938779 AGATT
1 AGATT
6938784 AGATCCAAAG
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
21 2 0.05
22 16 0.43
23 10 0.27
24 9 0.24
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (22 bp):
AGATTCACATTTAAAAAATTAG
Found at i:6939107 original size:34 final size:34
Alignment explanation
Indices: 6939063--6939148 Score: 154
Period size: 34 Copynumber: 2.5 Consensus size: 34
6939053 AAATGCCTTT
*
6939063 TAAATTATGCAAATGCAACAATCTAGATTCTCAA
1 TAAATGATGCAAATGCAACAATCTAGATTCTCAA
*
6939097 TAAATGATGCAAATGCAACAATCTAGATTTTCAA
1 TAAATGATGCAAATGCAACAATCTAGATTCTCAA
6939131 TAAATGATGCAAATGCAA
1 TAAATGATGCAAATGCAA
6939149 ATGTCATACA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (34 bp):
TAAATGATGCAAATGCAACAATCTAGATTCTCAA
Found at i:6940245 original size:10 final size:10
Alignment explanation
Indices: 6940230--6940263 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
6940220 TTTCTTTTTC
6940230 TTTTTCATTT
1 TTTTTCATTT
6940240 TTTTTCA-TT
1 TTTTTCATTT
6940249 TTTTTCATTT
1 TTTTTCATTT
6940259 TTTTT
1 TTTTT
6940264 TTTTGCACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTCATTT
Found at i:6940250 original size:9 final size:9
Alignment explanation
Indices: 6940230--6940262 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
6940220 TTTCTTTTTC
6940230 TTTTTCATTT
1 TTTTTCA-TT
6940240 TTTTTCATT
1 TTTTTCATT
6940249 TTTTTCATT
1 TTTTTCATT
6940258 TTTTT
1 TTTTT
6940263 TTTTTGCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.70
10 7 0.30
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTTTCATT
Found at i:6940836 original size:29 final size:29
Alignment explanation
Indices: 6940797--6940853 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
6940787 GCATCATATT
* *
6940797 TGTCACTTTTATTAAAATGATGAAAAATA
1 TGTCACTTTTAGTAAAACGATGAAAAATA
*
6940826 TGTCATTTTTAGTAAAACGATGAAAAAT
1 TGTCACTTTTAGTAAAACGATGAAAAAT
6940854 TAAATGAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (29 bp):
TGTCACTTTTAGTAAAACGATGAAAAATA
Found at i:6944936 original size:27 final size:28
Alignment explanation
Indices: 6944901--6944955 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
6944891 TTGCAAAAAA
*
6944901 AAATAATCATGCAA-TAATATAATATAT
1 AAATAATCATGCAATTAATATAAAATAT
*
6944928 AAATTATCATGCAATTAATATAAAATAT
1 AAATAATCATGCAATTAATATAAAATAT
6944956 CATGCAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.35
Consensus pattern (28 bp):
AAATAATCATGCAATTAATATAAAATAT
Found at i:6944950 original size:21 final size:21
Alignment explanation
Indices: 6944924--6944967 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
6944914 ATAATATAAT
*
6944924 ATATAAATTATCATGCAATTA
1 ATATAAAATATCATGCAATTA
6944945 ATATAAAATATCATGCAATTA
1 ATATAAAATATCATGCAATTA
6944966 AT
1 AT
6944968 TAATGCAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (21 bp):
ATATAAAATATCATGCAATTA
Found at i:6945101 original size:14 final size:15
Alignment explanation
Indices: 6945091--6945130 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
6945081 CAGAAAATGG
6945091 AAATAA-AAAAATCC
1 AAATAAGAAAAATCC
6945105 AAATAAGAAAAAT-C
1 AAATAAGAAAAATCC
*
6945119 AAA-AATAAAAAT
1 AAATAAGAAAAAT
6945131 AAAAAAGAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 8 0.33
14 10 0.42
15 6 0.25
ACGTcount: A:0.75, C:0.07, G:0.03, T:0.15
Consensus pattern (15 bp):
AAATAAGAAAAATCC
Found at i:6945124 original size:16 final size:14
Alignment explanation
Indices: 6945091--6945129 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
6945081 CAGAAAATGG
*
6945091 AAATAAAAAAATCC
1 AAATAAAAAAATCA
6945105 AAATAAGAAAAATCAA
1 AAATAA-AAAAATC-A
6945121 AAATAAAAA
1 AAATAAAAA
6945130 TAAAAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 6 0.27
15 10 0.45
16 6 0.27
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.13
Consensus pattern (14 bp):
AAATAAAAAAATCA
Found at i:6946138 original size:17 final size:18
Alignment explanation
Indices: 6946112--6946145 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
6946102 TTACTTTTAA
6946112 AAAAAGTTAAATTAAATC
1 AAAAAGTTAAATTAAATC
6946130 AAAAA-TTAAATTAAAT
1 AAAAAGTTAAATTAAAT
6946146 TAAATTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (18 bp):
AAAAAGTTAAATTAAATC
Found at i:6948868 original size:24 final size:22
Alignment explanation
Indices: 6948833--6948876 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 22
6948823 GCTTAAGGCT
6948833 TTACCCTATA-CCATTCTTATTC
1 TTACCCTATACCCA-TCTTATTC
6948855 TTACCCTATCTACCCATCTTAT
1 TTACCCTA--TACCCATCTTAT
6948877 GACCAATTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (22 bp):
TTACCCTATACCCATCTTATTC
Found at i:6950063 original size:16 final size:13
Alignment explanation
Indices: 6950028--6950054 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6950018 AATTCTTCTT
6950028 AAAAAAATTATGA
1 AAAAAAATTATGA
6950041 AAAAAAATTATGA
1 AAAAAAATTATGA
6950054 A
1 A
6950055 GAAATAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.22
Consensus pattern (13 bp):
AAAAAAATTATGA
Found at i:6950425 original size:23 final size:23
Alignment explanation
Indices: 6950384--6950433 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
6950374 AATAATGAAT
* *
6950384 AAAATGAGAATGAAATGAAAAGA
1 AAAATGAGAAAGAAATGAAAAAA
**
6950407 AAAATGAGAAAGATGTGAAAAAA
1 AAAATGAGAAAGAAATGAAAAAA
6950430 AAAA
1 AAAA
6950434 AAAAGAGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12
Consensus pattern (23 bp):
AAAATGAGAAAGAAATGAAAAAA
Found at i:6951139 original size:13 final size:14
Alignment explanation
Indices: 6951109--6951161 Score: 63
Period size: 13 Copynumber: 3.8 Consensus size: 14
6951099 ACAATTAGAG
6951109 TTGCATTCATGACA
1 TTGCATTCATGACA
*
6951123 TTGCATTCTTG-CA
1 TTGCATTCATGACA
* *
6951136 TTGCATTCATAAAAA
1 TTGCATTCAT-GACA
6951151 TTGCATTCATG
1 TTGCATTCATG
6951162 TAATTTGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
13 11 0.34
14 10 0.31
15 11 0.34
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (14 bp):
TTGCATTCATGACA
Found at i:6951582 original size:21 final size:21
Alignment explanation
Indices: 6951556--6951597 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
6951546 CCTTAGGACA
*
6951556 TTGAATTTTAGATGTGAATCT
1 TTGAATTTTAGATGAGAATCT
*
6951577 TTGAATTTTGGATGAGAATCT
1 TTGAATTTTAGATGAGAATCT
6951598 CTAAAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (21 bp):
TTGAATTTTAGATGAGAATCT
Found at i:6951676 original size:46 final size:46
Alignment explanation
Indices: 6951624--6951762 Score: 179
Period size: 46 Copynumber: 3.0 Consensus size: 46
6951614 AAAATCTTTT
*
6951624 AACTTTTCAAATGCGAATATTTGAAAATTTGGATGTGAATCCAAAA
1 AACTTTTCAAATGCGAATATTTGAAATTTTGGATGTGAATCCAAAA
* ***
6951670 AACTTTTCTAATGCGAATATTTGAAATTTTGGATGTGAATCTTTAA
1 AACTTTTCAAATGCGAATATTTGAAATTTTGGATGTGAATCCAAAA
** ** * *
6951716 AGTTTTTCAAATATGAATATTTGAAATTTTGGATGTAAATCCCAAA
1 AACTTTTCAAATGCGAATATTTGAAATTTTGGATGTGAATCCAAAA
6951762 A
1 A
6951763 GGTTTCAAAT
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (46 bp):
AACTTTTCAAATGCGAATATTTGAAATTTTGGATGTGAATCCAAAA
Found at i:6951745 original size:24 final size:23
Alignment explanation
Indices: 6951684--6951745 Score: 56
Period size: 24 Copynumber: 2.7 Consensus size: 23
6951674 TTTCTAATGC
** *
6951684 GAATATTTGAAA-TTTTGGATGT
1 GAATATTTGAAATTTTTAAATAT
*
6951706 GAATCTTT-AAAGTTTTTCAAATAT
1 GAATATTTGAAA-TTTTT-AAATAT
6951730 GAATATTTGAAATTTT
1 GAATATTTGAAATTTT
6951746 GGATGTAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 3 0.10
22 7 0.23
23 4 0.13
24 14 0.45
25 3 0.10
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (23 bp):
GAATATTTGAAATTTTTAAATAT
Found at i:6952038 original size:45 final size:44
Alignment explanation
Indices: 6951984--6952109 Score: 139
Period size: 45 Copynumber: 2.9 Consensus size: 44
6951974 TTATGGGAGA
* * *
6951984 AGCCTTTTATATTTTTTCCAAAGTTGTTGAGCCTTTGATGATATG
1 AGCCTTTTATATTTTTT-CAAAGTTGTTGAGCCTTTGATAAAAGG
** *
6952029 AGCCTTTTATATTTTTTCAAATGAAGTTAAGCCTTTGATAAAAGG
1 AGCCTTTTATATTTTTTCAAA-GTTGTTGAGCCTTTGATAAAAGG
** *
6952074 AG-CTTTT-TAAATTTTCAAAGTTATTGAGCCTTTGAT
1 AGCCTTTTATATTTTTTCAAAGTTGTTGAGCCTTTGAT
6952110 TAGATGAATT
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 13 0.19
43 10 0.15
44 9 0.13
45 36 0.53
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (44 bp):
AGCCTTTTATATTTTTTCAAAGTTGTTGAGCCTTTGATAAAAGG
Found at i:6952145 original size:87 final size:87
Alignment explanation
Indices: 6951981--6952192 Score: 208
Period size: 87 Copynumber: 2.4 Consensus size: 87
6951971 CTCTTATGGG
* * * *
6951981 AGAAGCCTTTTATATTTTTTCCAAAGTTGTTGAGCCTTTGATGATATGAGCCTTTTATATTTTTT
1 AGAAGCCTTTTA-A-ATTTT-CAAAGTTGTTGAGCCTTTGATGAGATGAACCTTTTATAATTTTT
* * *
6952046 CAAATGAAGTTAAGCCTTTGATAAA
63 CAAAAGAAGTTAAGCCTCTAATAAA
* * * * ** *
6952071 AGGAGCTTTTTAAATTTTCAAAGTTATTGAGCCTTTGATTAGATGAATTTTTTTTAATTTTTCAA
1 AGAAGCCTTTTAAATTTTCAAAGTTGTTGAGCCTTTGATGAGATGAACCTTTTATAATTTTTCAA
** * *
6952136 AAGTTGTTAAGTCTCTAATGAA
66 AAGAAGTTAAGCCTCTAATAAA
* *
6952158 ATAAGCCTTTTAAATTTTCTAAAGTTGTTAAGCCT
1 AGAAGCCTTTTAAATTTTC-AAAGTTGTTGAGCCT
6952193 CTCTTTAGAG
Statistics
Matches: 98, Mismatches: 23, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
87 70 0.71
88 17 0.17
89 1 0.01
90 10 0.10
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (87 bp):
AGAAGCCTTTTAAATTTTCAAAGTTGTTGAGCCTTTGATGAGATGAACCTTTTATAATTTTTCAA
AAGAAGTTAAGCCTCTAATAAA
Found at i:6952245 original size:42 final size:43
Alignment explanation
Indices: 6952161--6952247 Score: 106
Period size: 42 Copynumber: 2.0 Consensus size: 43
6952151 TAATGAAATA
* * *
6952161 AGCCTTTTAAATTTTCTAAAGTTGTTAAGCCTCTCTTTAGAGG
1 AGCCTTTTAAATTTTCTAAAGTGGTTAAACCTCTCTTGAGAGG
* *
6952204 AGCCTTTTATA-TTTCTCAAGTGGTTAAACCTCTGC-TGAGAGG
1 AGCCTTTTAAATTTTCTAAAGTGGTTAAACCTCT-CTTGAGAGG
6952246 AG
1 AG
6952248 TTTTTTTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
42 27 0.71
43 11 0.29
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (43 bp):
AGCCTTTTAAATTTTCTAAAGTGGTTAAACCTCTCTTGAGAGG
Found at i:6953265 original size:18 final size:19
Alignment explanation
Indices: 6953228--6953269 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
6953218 AATTTCGATT
6953228 GAAAAAAGAGAAAAAGGAA
1 GAAAAAAGAGAAAAAGGAA
* *
6953247 GAAAAAAGTGAAGAA-GAA
1 GAAAAAAGAGAAAAAGGAA
6953265 GAAAA
1 GAAAA
6953270 TTTTAGCTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.02
Consensus pattern (19 bp):
GAAAAAAGAGAAAAAGGAA
Found at i:6953475 original size:14 final size:13
Alignment explanation
Indices: 6953451--6953484 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
6953441 ATTTTTTTCT
6953451 TTTATTTGATTAA
1 TTTATTTGATTAA
6953464 TTTATGTTGATTAA
1 TTTAT-TTGATTAA
*
6953478 GTTATTT
1 TTTATTT
6953485 ATTGTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62
Consensus pattern (13 bp):
TTTATTTGATTAA
Found at i:6954570 original size:20 final size:21
Alignment explanation
Indices: 6954545--6954588 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
6954535 AATAATATTT
6954545 AACAAAACAAACAAAAAA-AA
1 AACAAAACAAACAAAAAACAA
6954565 AACAAAACAAACAAAAAACAA
1 AACAAAACAAACAAAAAACAA
6954586 AAC
1 AAC
6954589 GGAAATAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (21 bp):
AACAAAACAAACAAAAAACAA
Found at i:6954574 original size:16 final size:16
Alignment explanation
Indices: 6954548--6954588 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
6954538 AATATTTAAC
6954548 AAAAC-AAACAAAAAA
1 AAAACAAAACAAAAAA
*
6954563 AAAACAAAACAAACAA
1 AAAACAAAACAAAAAA
6954579 AAAACAAAAC
1 AAAACAAAAC
6954589 GGAAATAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 5 0.21
16 19 0.79
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAACAAAACAAAAAA
Found at i:6954695 original size:21 final size:21
Alignment explanation
Indices: 6954655--6954696 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6954645 CCTGTCAGCC
*
6954655 ACCCAACCAACTCTCCGACCA
1 ACCCAACCAACTCCCCGACCA
6954676 ACCCAACCAA-TCCCCTGACCA
1 ACCCAACCAACTCCCC-GACCA
6954697 GCTCTCTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.33, C:0.52, G:0.05, T:0.10
Consensus pattern (21 bp):
ACCCAACCAACTCCCCGACCA
Found at i:6955572 original size:12 final size:13
Alignment explanation
Indices: 6955540--6955577 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
6955530 TCAATTTTCA
6955540 ATTTTTTTATATT
1 ATTTTTTTATATT
* *
6955553 ATTATTTT-TGTT
1 ATTTTTTTATATT
6955565 ATTTTTTTATATT
1 ATTTTTTTATATT
6955578 TATGCATGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
ATTTTTTTATATT
Found at i:6955980 original size:16 final size:15
Alignment explanation
Indices: 6955949--6956026 Score: 57
Period size: 16 Copynumber: 4.8 Consensus size: 15
6955939 ATAGGTTTCT
6955949 AAAACTCCTAAAAATCC
1 AAAA-TCCT-AAAATCC
6955966 AAAATCCCTAAAATCC
1 AAAAT-CCTAAAATCC
* *
6955982 AAAACCCCCAAAAGTCC
1 AAAA-TCCTAAAA-TCC
* *
6955999 ACAATCCTCGAAATCC
1 AAAATCCT-AAAATCC
*
6956015 AAAGTCCTAAAA
1 AAAATCCTAAAA
6956027 AATCCTAAGG
Statistics
Matches: 48, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
15 3 0.06
16 29 0.60
17 16 0.33
ACGTcount: A:0.49, C:0.32, G:0.04, T:0.15
Consensus pattern (15 bp):
AAAATCCTAAAATCC
Found at i:6955986 original size:33 final size:33
Alignment explanation
Indices: 6955949--6956027 Score: 81
Period size: 33 Copynumber: 2.4 Consensus size: 33
6955939 ATAGGTTTCT
6955949 AAAACTCCTAAAAATCCAAAATCC-CTAAAATCC
1 AAAACTCCTAAAAATCCAAAATCCTC-AAAATCC
* * * * *
6955982 AAAACCCCCAAAAGTCCACAATCCTCGAAATCC
1 AAAACTCCTAAAAATCCAAAATCCTCAAAATCC
*
6956015 -AAAGTCCTAAAAA
1 AAAACTCCTAAAAA
6956028 ATCCTAAGGA
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
32 9 0.25
33 26 0.72
34 1 0.03
ACGTcount: A:0.49, C:0.32, G:0.04, T:0.15
Consensus pattern (33 bp):
AAAACTCCTAAAAATCCAAAATCCTCAAAATCC
Found at i:6977940 original size:49 final size:48
Alignment explanation
Indices: 6977763--6978011 Score: 342
Period size: 47 Copynumber: 5.2 Consensus size: 48
6977753 AAATTTGAAA
* * *
6977763 TTTCAAAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGGGGATGAGCT
1 TTTCCAAGATGAG-ATTTTAAAGTTGTGGAGCCTCTGTT-GAGAGGAGCT
* * *
6977813 TTTCC-AGATGAGATTTTAAAATTGTGGAGCCTCTATTGAAAGGAGCT
1 TTTCCAAGATGAGATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCT
* *
6977860 TTTCC-GGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT
1 TTTCCAAGATGAGATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCT
6977907 TTTCCAAGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCT
1 TTTCCAAGATGAG-ATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCT
* * *
6977956 TTTCCAA-ATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGCT
1 TTTCCAAGATGAGATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCT
*
6978003 TTTTCAAGA
1 TTTCCAAGA
6978012 GAATTTATTT
Statistics
Matches: 179, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 92 0.51
48 35 0.20
49 48 0.27
50 4 0.02
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (48 bp):
TTTCCAAGATGAGATTTTAAAGTTGTGGAGCCTCTGTTGAGAGGAGCT
Found at i:6977953 original size:96 final size:95
Alignment explanation
Indices: 6977769--6978011 Score: 353
Period size: 96 Copynumber: 2.5 Consensus size: 95
6977759 GAAATTTCAA
* * *
6977769 AGATGAGAATTTTAAAGTTGTGGAGCCTCTGTTGGGGATGAGCTTTTCC-AGATGAGATTTTAAA
1 AGATGAG-ATTTTAAAGTTGTTGAGCCTCTGTT-GAGAGGAGCTTTTCCAAGATGAGATTTTAAA
6977833 ATTGTGGAGCCTCTATTGAAAGGAGCTTTTCC
64 ATTGTGGAGCCTCTATTGAAAGGAGCTTTTCC
* *
6977865 GGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAGATGAGAATTTTAAAG
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAGATGAG-ATTTTAAAA
* *
6977930 TTGTGGAGCCTCTGTTGAGAGGAGCTTTTCC
65 TTGTGGAGCCTCTATTGAAAGGAGCTTTTCC
* * * *
6977961 AAATGAGATTTTAAAGTTATTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGA
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAGA
6978012 GAATTTATTT
Statistics
Matches: 133, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 13 0.10
95 31 0.23
96 89 0.67
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.34
Consensus pattern (95 bp):
AGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTCCAAGATGAGATTTTAAAAT
TGTGGAGCCTCTATTGAAAGGAGCTTTTCC
Found at i:6978160 original size:5 final size:5
Alignment explanation
Indices: 6978150--6978200 Score: 56
Period size: 5 Copynumber: 10.8 Consensus size: 5
6978140 AATAATATTT
*
6978150 AACAA AAC-A AAC-A AA-AA AACAA AAC-A AACAA AACAA ACAAAA AACAA
1 AACAA AACAA AACAA AACAA AACAA AACAA AACAA AACAA A-ACAA AACAA
6978197 AACA
1 AACA
6978201 GAAATAAGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
4 14 0.35
5 22 0.55
6 4 0.10
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (5 bp):
AACAA
Found at i:6978162 original size:9 final size:9
Alignment explanation
Indices: 6978150--6978200 Score: 81
Period size: 9 Copynumber: 6.0 Consensus size: 9
6978140 AATAATATTT
6978150 AACAAAACA
1 AACAAAACA
6978159 AACAAAA-A
1 AACAAAACA
6978167 AACAAAACA
1 AACAAAACA
6978176 AACAAAACA
1 AACAAAACA
6978185 AAC-AAA-A
1 AACAAAACA
6978192 AACAAAACA
1 AACAAAACA
6978201 GAAATAAGAC
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
7 4 0.10
8 14 0.36
9 21 0.54
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (9 bp):
AACAAAACA
Found at i:6978163 original size:4 final size:4
Alignment explanation
Indices: 6978154--6978197 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
6978144 ATATTTAACA
*
6978154 AAAC AAAC AAAA AAAC AAAAC AAAC AAAAC AAAC AAA- AAAC AAA
1 AAAC AAAC AAAC AAAC -AAAC AAAC -AAAC AAAC AAAC AAAC AAA
6978198 ACAGAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 3 0.09
4 24 0.69
5 8 0.23
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (4 bp):
AAAC
Found at i:6978186 original size:26 final size:25
Alignment explanation
Indices: 6978150--6978200 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
6978140 AATAATATTT
6978150 AACAAAACAAACAAAAAAACAAAACA
1 AACAAAACAAAC-AAAAAACAAAACA
6978176 AACAAAACAAACAAAAAACAAAACA
1 AACAAAACAAACAAAAAACAAAACA
6978201 GAAATAAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.52
26 12 0.48
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (25 bp):
AACAAAACAAACAAAAAACAAAACA
Found at i:6978309 original size:21 final size:21
Alignment explanation
Indices: 6978261--6978301 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
6978251 AACTCCCTGT
*
6978261 CAACC-ACTCAACCAACTCCC
1 CAACCAACCCAACCAACTCCC
6978281 CAACCAACCCAACCAA-TCCC
1 CAACCAACCCAACCAACTCCC
6978301 C
1 C
6978302 TGACCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.37, C:0.56, G:0.00, T:0.07
Consensus pattern (21 bp):
CAACCAACCCAACCAACTCCC
Found at i:6978514 original size:18 final size:19
Alignment explanation
Indices: 6978487--6978546 Score: 70
Period size: 18 Copynumber: 3.2 Consensus size: 19
6978477 CATCTAGCCG
*
6978487 AAAAAGAAAAAAAAAACAC
1 AAAAACAAAAAAAAAACAC
*
6978506 AAAAA-AAAATAAAAACAC
1 AAAAACAAAAAAAAAACAC
*
6978524 AAAAACAGAAACAAAAAC-C
1 AAAAACA-AAAAAAAAACAC
6978543 AAAA
1 AAAA
6978547 CGAAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.46
19 11 0.30
20 9 0.24
ACGTcount: A:0.82, C:0.13, G:0.03, T:0.02
Consensus pattern (19 bp):
AAAAACAAAAAAAAAACAC
Found at i:6978546 original size:26 final size:26
Alignment explanation
Indices: 6978498--6978547 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
6978488 AAAAGAAAAA
*
6978498 AAAAACACAAAAAAAAATAAAAACAC
1 AAAAACACAAAAAAAAACAAAAACAC
* * *
6978524 AAAAACAGAAACAAAAACCAAAAC
1 AAAAACACAAAAAAAAACAAAAAC
6978548 GAAATCATAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.78, C:0.18, G:0.02, T:0.02
Consensus pattern (26 bp):
AAAAACACAAAAAAAAACAAAAACAC
Found at i:6979185 original size:9 final size:8
Alignment explanation
Indices: 6979164--6979212 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
6979154 AAAAAAAAAT
6979164 TTTTTTTA
1 TTTTTTTA
* *
6979172 ATTTTCTA
1 TTTTTTTA
6979180 TTTTTTTA
1 TTTTTTTA
* *
6979188 TATTATTA
1 TTTTTTTA
6979196 TTTTTGTTA
1 TTTTT-TTA
6979205 TTTTTTTA
1 TTTTTTTA
6979213 ATATTTATGC
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
8 24 0.75
9 8 0.25
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (8 bp):
TTTTTTTA
Found at i:6979625 original size:33 final size:34
Alignment explanation
Indices: 6979588--6979666 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
6979578 ATAGGTTTCT
6979588 AAAACTCCTAAAAA-TCCAAAATCC-CTAAAATCC
1 AAAACTCCTAAAAAGTCCAAAATCCTC-AAAATCC
* *
6979621 AAAAC-CCCAAAAAGTCCAAAATCCTCGAAATCC
1 AAAACTCCTAAAAAGTCCAAAATCCTCAAAATCC
*
6979654 -AAAGTCCTAAAAA
1 AAAACTCCTAAAAA
6979667 ATCCTAAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
32 10 0.26
33 28 0.72
34 1 0.03
ACGTcount: A:0.52, C:0.29, G:0.04, T:0.15
Consensus pattern (34 bp):
AAAACTCCTAAAAAGTCCAAAATCCTCAAAATCC
Found at i:6979670 original size:17 final size:16
Alignment explanation
Indices: 6979588--6979666 Score: 79
Period size: 16 Copynumber: 4.8 Consensus size: 16
6979578 ATAGGTTTCT
6979588 AAAACTCCTAAAAATCC
1 AAAA-TCCTAAAAATCC
6979605 AAAATCCCT-AAAATCC
1 AAAAT-CCTAAAAATCC
* *
6979621 AAAACCCCAAAAAGTCC
1 AAAATCCTAAAAA-TCC
**
6979638 AAAATCCTCGAAATCC
1 AAAATCCTAAAAATCC
*
6979654 AAAGTCCTAAAAA
1 AAAATCCTAAAAA
6979667 ATCCTAAGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
15 2 0.04
16 29 0.58
17 19 0.38
ACGTcount: A:0.52, C:0.29, G:0.04, T:0.15
Consensus pattern (16 bp):
AAAATCCTAAAAATCC
Found at i:6982737 original size:47 final size:47
Alignment explanation
Indices: 6982658--6982902 Score: 357
Period size: 47 Copynumber: 5.1 Consensus size: 47
6982648 AAATTTGAAA
*
6982658 TTTCCAAGATGAGAATTTTAAAGTTGTAGAGCCTCTGTT-AGGAGGAGCT
1 TTTCC-AGATGAG-ATTTTAAAGTTGTTGAGCCTCTGTTGA-GAGGAGCT
* * *
6982707 TTTCTAGATGAGATTTTAAAGTTGTGGAGCCTCTATTGAGAGGAGCT
1 TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT
*
6982754 TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTTTGTTGAGAGGAGCT
1 TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT
*
6982801 TTTCCAAGATGAGAATTTTAAAGTTATTGAGCCTCTGTTGAGAGGAGCT
1 TTTCC-AGATGAG-ATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT
* * *
6982850 TTTCCAAATGAGATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCT
1 TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT
6982897 TTTCCA
1 TTTCCA
6982903 AGAGAATTTA
Statistics
Matches: 180, Mismatches: 13, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
47 117 0.65
48 21 0.12
49 42 0.23
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (47 bp):
TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCT
Found at i:6982843 original size:96 final size:95
Alignment explanation
Indices: 6982658--6982905 Score: 374
Period size: 96 Copynumber: 2.6 Consensus size: 95
6982648 AAATTTGAAA
* * *
6982658 TTTCCAAGATGAGAATTTTAAAGTTGTAGAGCCTCTGTT-AGGAGGAGCTTTT-CTAGATGAGAT
1 TTTCC-AGATGAG-ATTTTAAAGTTGTTGAGCCTTTGTTGA-GAGGAGCTTTTCCAAGATGAGAT
*
6982721 TTTAAAGTTGTGGAGCCTCTATTGAGAGGAGCT
63 TTTAAAGTTATGGAGCCTCTATTGAGAGGAGCT
6982754 TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTTTGTTGAGAGGAGCTTTTCCAAGATGAGAATTT
1 TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTTTGTTGAGAGGAGCTTTTCCAAGATGAG-ATTT
* *
6982819 TAAAGTTATTGAGCCTCTGTTGAGAGGAGCT
65 TAAAGTTATGGAGCCTCTATTGAGAGGAGCT
* *
6982850 TTTCCAAATGAGATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTCCAAGA
1 TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTTTGTTGAGAGGAGCTTTTCCAAGA
6982906 GAATTTATTT
Statistics
Matches: 141, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
94 34 0.24
95 16 0.11
96 91 0.65
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.35
Consensus pattern (95 bp):
TTTCCAGATGAGATTTTAAAGTTGTTGAGCCTTTGTTGAGAGGAGCTTTTCCAAGATGAGATTTT
AAAGTTATGGAGCCTCTATTGAGAGGAGCT
Found at i:6983815 original size:27 final size:27
Alignment explanation
Indices: 6983763--6983815 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
6983753 CTGTCACTAG
*
6983763 CCAAAACAACGTCGTTTCAATAAAAGC
1 CCAAAACAACGTCGTTTCAACAAAAGC
* * *
6983790 CCAAAACGACGTCGTTTTAACCAAAG
1 CCAAAACAACGTCGTTTCAACAAAAG
6983816 AAGGATCCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.19
Consensus pattern (27 bp):
CCAAAACAACGTCGTTTCAACAAAAGC
Found at i:6984042 original size:8 final size:8
Alignment explanation
Indices: 6984021--6984071 Score: 57
Period size: 8 Copynumber: 6.1 Consensus size: 8
6984011 AAACAAAATT
6984021 TTTTTTTGA
1 TTTTTTT-A
*
6984030 ATTTTTTA
1 TTTTTTTA
6984038 TTTTTTTA
1 TTTTTTTA
* *
6984046 TATTATTA
1 TTTTTTTA
6984054 TTTTTGTTA
1 TTTTT-TTA
6984063 TTTTTTTA
1 TTTTTTTA
6984071 T
1 T
6984072 ATTTATGCAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
8 21 0.60
9 14 0.40
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (8 bp):
TTTTTTTA
Found at i:6984478 original size:16 final size:15
Alignment explanation
Indices: 6984447--6984524 Score: 66
Period size: 16 Copynumber: 4.8 Consensus size: 15
6984437 ATAGGTTTCT
6984447 AAAACTCCTAAAAATCC
1 AAAA-TCCT-AAAATCC
6984464 AAAATCCCTAAAATCC
1 AAAAT-CCTAAAATCC
* *
6984480 AAAACCCCCAAAAGTCC
1 AAAA-TCCTAAAA-TCC
*
6984497 AAAATCCTCGAAATCC
1 AAAATCCT-AAAATCC
*
6984513 AAAGTCCTAAAA
1 AAAATCCTAAAA
6984525 AATCCTAAGG
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
15 3 0.06
16 30 0.60
17 17 0.34
ACGTcount: A:0.50, C:0.31, G:0.04, T:0.15
Consensus pattern (15 bp):
AAAATCCTAAAATCC
Found at i:6984484 original size:33 final size:33
Alignment explanation
Indices: 6984447--6984525 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 33
6984437 ATAGGTTTCT
6984447 AAAACTCCTAAAAATCCAAAATCC-CTAAAATCC
1 AAAACTCCTAAAAATCCAAAATCCTC-AAAATCC
* * * *
6984480 AAAACCCCCAAAAGTCCAAAATCCTCGAAATCC
1 AAAACTCCTAAAAATCCAAAATCCTCAAAATCC
*
6984513 -AAAGTCCTAAAAA
1 AAAACTCCTAAAAA
6984526 ATCCTAAGGA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
32 9 0.24
33 27 0.73
34 1 0.03
ACGTcount: A:0.51, C:0.30, G:0.04, T:0.15
Consensus pattern (33 bp):
AAAACTCCTAAAAATCCAAAATCCTCAAAATCC
Found at i:6991210 original size:32 final size:32
Alignment explanation
Indices: 6991164--6991227 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
6991154 AACGATCGCA
*
6991164 ATTAGGATATTCATATCAAATTTAGTAGATAT
1 ATTAAGATATTCATATCAAATTTAGTAGATAT
*
6991196 ATTAAGATATTCATATCAAATTTATTAGATAT
1 ATTAAGATATTCATATCAAATTTAGTAGATAT
6991228 CGTATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.42
Consensus pattern (32 bp):
ATTAAGATATTCATATCAAATTTAGTAGATAT
Found at i:6993335 original size:13 final size:13
Alignment explanation
Indices: 6993317--6993341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6993307 GAAAGAGAAT
6993317 GAAAAAAAAAAAA
1 GAAAAAAAAAAAA
6993330 GAAAAAAAAAAA
1 GAAAAAAAAAAA
6993342 CAAGAAAAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:6993355 original size:15 final size:15
Alignment explanation
Indices: 6993318--6993349 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6993308 AAAGAGAATG
6993318 AAAAAAAAAAAAGAA
1 AAAAAAAAAAAAGAA
*
6993333 AAAAAAAAACAAGAA
1 AAAAAAAAAAAAGAA
6993348 AA
1 AA
6993350 GGAAAAGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAGAA
Found at i:7003977 original size:22 final size:21
Alignment explanation
Indices: 7003921--7003963 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
7003911 ATTATATAAC
7003921 AATGCTAGATGTAAAAAGCTA
1 AATGCTAGATGTAAAAAGCTA
7003942 AATGCTAGATGTAAAAAGCTA
1 AATGCTAGATGTAAAAAGCTA
7003963 A
1 A
7003964 CTTGCTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.23
Consensus pattern (21 bp):
AATGCTAGATGTAAAAAGCTA
Found at i:7008485 original size:27 final size:27
Alignment explanation
Indices: 7008435--7008506 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
7008425 AATCCGTAAT
* *
7008435 ATTAAAATACATAA-ATTAT-GATAAA
1 ATTAAAATAAATAATATTATAAATAAA
*
7008460 A-TAAAATAAGATGATATTATAAATAAA
1 ATTAAAATAA-ATAATATTATAAATAAA
*
7008487 ATTAAATTAAATAATATTAT
1 ATTAAAATAAATAATATTAT
7008507 TTTATTTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
24 7 0.18
25 4 0.11
26 5 0.13
27 15 0.39
28 7 0.18
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (27 bp):
ATTAAAATAAATAATATTATAAATAAA
Found at i:7019424 original size:33 final size:35
Alignment explanation
Indices: 7019387--7019456 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
7019377 GTAGGCACTT
7019387 AGAACCTTTCTTGTTTCAC-A-ACATCTCTTTATA
1 AGAACCTTTCTTGTTTCACAAGACATCTCTTTATA
7019420 AGAACCTTTCTTGTTTCACAAGACATCTCTTTATA
1 AGAACCTTTCTTGTTTCACAAGACATCTCTTTATA
7019455 AG
1 AG
7019457 GCATCTGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 19 0.54
34 1 0.03
35 15 0.43
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.40
Consensus pattern (35 bp):
AGAACCTTTCTTGTTTCACAAGACATCTCTTTATA
Found at i:7024696 original size:11 final size:11
Alignment explanation
Indices: 7024680--7024721 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
7024670 AATCTCATAA
7024680 GAGATTTGTTT
1 GAGATTTGTTT
*
7024691 GAGATTTGTTA
1 GAGATTTGTTT
7024702 GAGATTTGTTT
1 GAGATTTGTTT
*
7024713 GGGATTTGT
1 GAGATTTGT
7024722 CAGATATTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:7024707 original size:22 final size:22
Alignment explanation
Indices: 7024679--7024721 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7024669 AAATCTCATA
7024679 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
*
7024701 AGAGATTTGTTTGGGATTTGT
1 AGAGATTTGTTTGAGATTTGT
7024722 CAGATATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:7024833 original size:52 final size:52
Alignment explanation
Indices: 7024756--7024902 Score: 181
Period size: 52 Copynumber: 2.8 Consensus size: 52
7024746 GATTTGCAAA
* * *
7024756 AGAAGAATTCCAAGAA--AAAGAGGATTCTTAATAGGTAAGTTTGACTTGCAAG
1 AGAAGAATTCTAA-AAGGAAAG-GGATTCTTAATAGGCAAGTTTGACTTACAAG
* * *
7024808 AGAAGAATTGTAAAAGGAAATGGATTCTTAATAGGCAAGTTTGACTTACAGG
1 AGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTTGACTTACAAG
* * *
7024860 AGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTTG
1 AGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTTG
7024903 TATGATTATA
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.02
52 77 0.94
53 3 0.04
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.26
Consensus pattern (52 bp):
AGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTTGACTTACAAG
Found at i:7031862 original size:4 final size:4
Alignment explanation
Indices: 7031855--7031883 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
7031845 TATGTATATA
7031855 TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
7031884 GAAGAGGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:7039035 original size:358 final size:356
Alignment explanation
Indices: 7038147--7039387 Score: 1750
Period size: 357 Copynumber: 3.5 Consensus size: 356
7038137 AAAGTGATTT
* * * *
7038147 ATAATAAAAGACGCCTTTAATAATCCA-AAAATTTTTTTTTGAGGGAAATTATTGAAGGTATTGT
1 ATAATAAAAGATGCCTTTAATAATCCAGAAAA--TTTTTTT-AGGAAAATTATTGAAGGCATTAT
* * * *
7038211 TTTCTGCAATAGTCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCGT
63 TTTCTACAATCGCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTT
* * *
7038276 GGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAGAAGGTATTTTACAATA
128 GGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTA
* ** *
7038341 GAAGACGCCTTTAATAATTCTCAAAATATTAAGTGGGAAAATTTTAAAGGCGTCTGTTATTAACA
193 GAAGATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACA
* * * * * *
7038406 AATACCTTCAGTAATGGATTATTAAGTTTAAAGATATATTGAAAGTGCCTTTTCTGATAAACACT
258 AATGCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCCTTTTCTAATAAACACA
*
7038471 TTCCATTACCATCGTGGTATATTGAAGGCGTGTC
323 TTCCATTACCATCGTGGTATATTGAAGGTGTGTC
* * * *
7038505 ATAATAAAATATGCCTTTAATAATCCAAAAAAGTTTTTTAGGAAAATTATTGAAGGCATTGTTTT
1 ATAATAAAAGATGCCTTTAATAATCCAGAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTTT
** * * *
7038570 CTGTAA-CAGCCTTAAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCCTAG
66 CTACAATC-GCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTGG
* * * *
7038634 ATATACGCCTTTAATAATAGTTTTAAAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGA
130 ATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGA
* * * *
7038699 AGATGCCTTTAATAATTCCCAAACTATTAAGTGAAAAAATTTTGAAGGCGTCTGTTACTAATAAA
195 AGATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAA
* * *
7038764 CGCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCATTTTTCTAATAAACACCT
260 TGCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGC-CTTTTCTAATAAACACAT
* *
7038829 TCCATTACCATCATGGTATATTAAAGGTGTGTC
324 TCCATTACCATCGTGGTATATTGAAGGTGTGTC
* * *
7038862 ATAATAAAAGATGCCTTTAATAATCTAGGAAAATTTTTTTAGAAAAATTATTGAAGGCGTTATTT
1 ATAATAAAAGATGCCTTTAATAATCCA-GAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTT
* *
7038927 TTTACAATCGCCTTCAGTAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTGG
65 TCTACAATCGCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTGG
* *
7038992 ATATACGCCTTCAATAACAGTGTTAGAATTTGTGTAACGGTATATAAAAGGCATTTTACAGTATA
130 ATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGA
* * * * * *
7039057 AGATGCCTTTAATAGTTCTAAAAATTTTTAGTGAAAAAAATTTGAAGGAGTCTGTTATTAACAAA
195 AGATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAA
* *
7039122 TGCCTTTAGTAATTGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTCTAATAAACACATT
260 TGCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCCTTTTCTAATAAACACATT
* * * *
7039187 TCATTACCATGGTGGTATATTGAAGGTATCTC
325 CCATTACCATCGTGGTATATTGAAGGTGTGTC
*
7039219 ATAATAAAAGATGCCTTTAATAATCTAGGAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTT
1 ATAATAAAAGATGCCTTTAATAATCCA-GAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTT
* * * * * *
7039284 TCTACAACCGCCTTTAGTAATTAACTACAAACTGTGAT-AGAAATTATTAAAGGCTTCTTTCTTG
65 TCTACAATCGCCTTCAATAATTATCTACAAACTATGATAAG-AATTATTAAAGGCATCTTTCTTG
*
7039348 GATATACGCCTTCAGTAACAGTGTTAGAATTTGTGTGACG
129 GATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACG
7039388 ATATGTTTAA
Statistics
Matches: 789, Mismatches: 88, Indels: 13
0.89 0.10 0.01
Matches are distributed among these distances:
356 239 0.30
357 275 0.35
358 270 0.34
359 5 0.01
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (356 bp):
ATAATAAAAGATGCCTTTAATAATCCAGAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTTT
CTACAATCGCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTGGA
TATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGAA
GATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAAT
GCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCCTTTTCTAATAAACACATTC
CATTACCATCGTGGTATATTGAAGGTGTGTC
Found at i:7039345 original size:357 final size:355
Alignment explanation
Indices: 7038147--7039387 Score: 1741
Period size: 358 Copynumber: 3.5 Consensus size: 355
7038137 AAAGTGATTT
* * * *
7038147 ATAATAAAAGACGCCTTTAATAATCCA-AAAATTTTTTTTTGAGGGAAATTATTGAAGGTATTGT
1 ATAATAAAAGATGCCTTTAATAATCCAGAAAA--TTTTTTT-AGGAAAATTATTGAAGGCATTAT
* * * *
7038211 TTTCTGCAATAGTCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCGT
63 TTTCTACAACAGCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTT
* * *
7038276 GGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAGAAGGTATTTTACAATA
128 GGATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTA
* ** *
7038341 GAAGACGCCTTTAATAATTCTCAAAATATTAAGTGGGAAAATTTTAAAGGCGTCTGTTATTAACA
193 GAAGATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACA
* * * * *
7038406 AATACCTTCAGTAATGGATTATTAAGTTTAAAGATATATTGAAAGTGCCTTTTCTGATAAACACT
258 AATGCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCCTTTTCTAATAAACACT
*
7038471 TTCCATTACCATCGTGGTATATTGAAGGCGTGTC
323 TT-CATTACCATCGTGGTATATTGAAGGTGTGTC
* * * *
7038505 ATAATAAAATATGCCTTTAATAATCCAAAAAAGTTTTTTAGGAAAATTATTGAAGGCATTGTTTT
1 ATAATAAAAGATGCCTTTAATAATCCAGAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTTT
** * * *
7038570 CTGTAACAGCCTTAAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCCTAGA
66 CTACAACAGCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTGGA
* * * *
7038635 TATACGCCTTTAATAATAGTTTTAAAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGAA
131 TATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGAA
* * * * *
7038700 GATGCCTTTAATAATTCCCAAACTATTAAGTGAAAAAATTTTGAAGGCGTCTGTTACTAATAAAC
196 GATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAAT
*
7038765 GCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCATTTTTCTAATAAACACCTT
261 GCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGC-CTTTTCTAATAAACA-CTT
* * *
7038830 CCATTACCATCATGGTATATTAAAGGTGTGTC
324 TCATTACCATCGTGGTATATTGAAGGTGTGTC
* * *
7038862 ATAATAAAAGATGCCTTTAATAATCTAGGAAAATTTTTTTAGAAAAATTATTGAAGGCGTTATTT
1 ATAATAAAAGATGCCTTTAATAATCCA-GAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTT
* *
7038927 TTTACAATC-GCCTTCAGTAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTG
65 TCTACAA-CAGCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTG
* *
7038991 GATATACGCCTTCAATAACAGTGTTAGAATTTGTGTAACGGTATATAAAAGGCATTTTACAGTAT
129 GATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAG
* * * * * *
7039056 AAGATGCCTTTAATAGTTCTAAAAATTTTTAGTGAAAAAAATTTGAAGGAGTCTGTTATTAACAA
194 AAGATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAA
* *
7039121 ATGCCTTTAGTAATTGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTCTAATAAACACAT
259 ATGCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCCTTTTCTAATAAACAC-T
* * *
7039186 TTCATTACCATGGTGGTATATTGAAGGTATCTC
323 TTCATTACCATCGTGGTATATTGAAGGTGTGTC
*
7039219 ATAATAAAAGATGCCTTTAATAATCTAGGAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTT
1 ATAATAAAAGATGCCTTTAATAATCCA-GAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTT
* * * * * *
7039284 TCTACAACCGCCTTTAGTAATTAACTACAAACTGTGAT-AGAAATTATTAAAGGCTTCTTTCTTG
65 TCTACAACAGCCTTCAATAATTATCTACAAACTATGATAAG-AATTATTAAAGGCATCTTTCTTG
*
7039348 GATATACGCCTTCAGTAACAGTGTTAGAATTTGTGTGACG
129 GATATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACG
7039388 ATATGTTTAA
Statistics
Matches: 789, Mismatches: 86, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
356 242 0.31
357 269 0.34
358 273 0.35
359 5 0.01
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (355 bp):
ATAATAAAAGATGCCTTTAATAATCCAGAAAATTTTTTTAGGAAAATTATTGAAGGCATTATTTT
CTACAACAGCCTTCAATAATTATCTACAAACTATGATAAGAATTATTAAAGGCATCTTTCTTGGA
TATACGCCTTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGAA
GATGCCTTTAATAATTCTCAAAATATTAAGTGAAAAAATTTTGAAGGCGTCTGTTATTAACAAAT
GCCTTTAGTAATGGATTACTAAGTTTAAAGGTATATTGAAAGTGCCTTTTCTAATAAACACTTTC
ATTACCATCGTGGTATATTGAAGGTGTGTC
Found at i:7041572 original size:159 final size:159
Alignment explanation
Indices: 7041278--7041594 Score: 526
Period size: 159 Copynumber: 2.0 Consensus size: 159
7041268 AAGACCTATG
** * * *
7041278 ATGCATTAAAAGTAGAGAACTTTAATATGCATGCTATTTTATTATGGACTATCAACGATTTTTTT
1 ATGCATTAAAAACAGAGAACTTTAATATGCATGCTACTTTATTATGAACTATCAACGATTTTTCT
*
7041343 GCTTATGCAAATTTATCTGGTTGGAGTACAAAAGGTTATTATGCTTTTCCATGTTATGCTGTACA
66 GCTTATGCAAATTTATCTGGTTGGAGTACAAAAGGTTATTATGCTTGTCCATGTTATGCTGTACA
*
7041408 GACATGTTCGACGTAGTTACGTAATGGTT
131 GACATGTTCGACGTAGTTACATAATGGTT
* * * *
7041437 ATGCATTAAAAACAGAGATCTTTAATATGTATGCTGCTTTATTATGAACTATCAATGATTTTTCT
1 ATGCATTAAAAACAGAGAACTTTAATATGCATGCTACTTTATTATGAACTATCAACGATTTTTCT
7041502 GCTTATGCAAATTTATCTGGTTGGAGTACAAAAGGTTATTATGCTTGTCCATGTTATGCTGTACA
66 GCTTATGCAAATTTATCTGGTTGGAGTACAAAAGGTTATTATGCTTGTCCATGTTATGCTGTACA
*
7041567 TACATGTTCGACGTAGTTACATAATGGT
131 GACATGTTCGACGTAGTTACATAATGGT
7041595 ATGAAGTTTT
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
159 146 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (159 bp):
ATGCATTAAAAACAGAGAACTTTAATATGCATGCTACTTTATTATGAACTATCAACGATTTTTCT
GCTTATGCAAATTTATCTGGTTGGAGTACAAAAGGTTATTATGCTTGTCCATGTTATGCTGTACA
GACATGTTCGACGTAGTTACATAATGGTT
Found at i:7049040 original size:158 final size:156
Alignment explanation
Indices: 7048515--7049287 Score: 703
Period size: 158 Copynumber: 4.9 Consensus size: 156
7048505 ATTGAATACG
* * * * **
7048515 CAATAGTTTTTACCTTTCATAAAGTCATTGCATCTCAATGCACACAAAATGCTATCTAGTTCAAT
1 CAATAATTTTCACCTTTCATAAAGTCATTGCAT-TCAATACACACAATACACTATCTAGTTCAAT
** * * * * * *
7048580 ATTGAATTTCTTACAAATTTTAGGCTTTGAATTACTTTCAAAGTAGTTCATCAATAAGCACAATA
65 AAAGAA-TTCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAACAAGCACAATA
* * * *
7048645 CATAACAAGAATCACAAAGCAAAATATG
129 CACAACAAGAAACAGAAAGCAAAATATA
* * ** * * *
7048673 CAATAATTTTCATCTTTCACAAAGTCATAACATCTCATTACGCACAATACACTATCTAGTTTAAT
1 CAATAATTTTCACCTTTCATAAAGTCATTGCAT-TCAATACACACAATACACTATCTAGTTCAAT
* * * * *
7048738 AAAGAATTTTATACAAAATTTAGGCTTTAAATTACA-ATAAAAGTAG-TCATCAACAAGCATAAT
65 AAAGAATTCTA-ACAAATTTTATGCTTTGAATTA-ATATAAAAGTAGTTCATCAACAAGCACAAT
* * * *
7048801 ACACAAAAATAAATAGAAAGCAAAATAAA
128 ACACAACAAGAAACAGAAAGCAAAATATA
* * *
7048830 TAATAATTTTCACCTTTCACAAAGTCATTGCA-TCATAATACACATAATACACTATCTAGTTCAA
1 CAATAATTTTCACCTTTCATAAAGTCATTGCATTC--AATACACACAATACACTATCTAGTTCAA
* *
7048894 TAAAGAATATCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAATATGCACAAT
64 TAAAGAAT-TCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAACAAGCACAAT
* * *
7048959 ACA-AAGCAAGAAACAAAAAGTAAAACATA
128 ACACAA-CAAGAAACAGAAAGCAAAATATA
* * * *
7048988 CAACAATTTTCACCTTTTATAAAGTCATTACATTGCAATACACATAATACACTATCTAGTTCAAT
1 CAATAATTTTCACCTTTCATAAAGTCATTGCATT-CAATACACACAATACACTATCTAGTTCAAT
**** * * *
7049053 -ATTTTTCTCTCCAACAAATTTTGTGCTTTGAATTACTATAAAAGCAGTTCATCAACAAGCACAA
65 AAAGAAT-TCT--AACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAACAAGCACAA
* * *
7049117 TACACAATAAGAAATAGAAAGCAAAATACA
127 TACACAACAAGAAACAGAAAGCAAAATATA
* * * * * * *
7049147 TAATAATTTTCACCATTCATAGAGTTATGGCA-TCATAATACATACAATACACTACCTAGTTCAA
1 CAATAATTTTCACCTTTCATAAAGTCATTGCATTC--AATACACACAATACACTATCTAGTTCAA
* * * * * * * * *
7049211 TAAAAAATTTTCAACAAATTTTATGCTTTGAATTATTGTAACAGTAGTTCAACAAAAAACATAAT
64 TAAAGAATTCT-AACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAACAAGCACAAT
*
7049276 ATACAACAAGAA
128 ACACAACAAGAA
7049288 TAAAATATAT
Statistics
Matches: 497, Mismatches: 102, Indels: 32
0.79 0.16 0.05
Matches are distributed among these distances:
155 2 0.00
156 1 0.00
157 136 0.27
158 232 0.47
159 121 0.24
160 5 0.01
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.31
Consensus pattern (156 bp):
CAATAATTTTCACCTTTCATAAAGTCATTGCATTCAATACACACAATACACTATCTAGTTCAATA
AAGAATTCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAACAAGCACAATACA
CAACAAGAAACAGAAAGCAAAATATA
Found at i:7049210 original size:317 final size:313
Alignment explanation
Indices: 7048516--7049261 Score: 836
Period size: 315 Copynumber: 2.4 Consensus size: 313
7048506 TTGAATACGC
* * * * * * * ** *
7048516 AATAGTTTTTACCTTTCATAAAGTCATTGCATC-TCAATGCACACAAAATGCTATCTAGTTCAAT
1 AATAATTTTCACCATTCACAAAGTCATGGCATCAT-AATACACACAATACACTACCTAGTTCAAT
** * * * * *
7048580 ATTGAATTTCTTACAAATTTTAGGCTTTGAATTACTTTCAAAGTAGTTCATCAATAAGCACAATA
65 AAAGAA-TTCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAATAAGCACAATA
* * * * * *
7048645 CATAACAAGAATCACAAAGCAAAATATGCAATAATTTTCATCTTTCACAAAGTCATAACATCTCA
129 CATAACAAGAAACAAAAAGCAAAACATACAACAATTTTCACCTTTCACAAAGTCATAACATCTCA
* * *
7048710 TTACGCACAATACACTATCTAGTTTAATAAAGAATTTTATACAAAATTTAGGCTTTAAATTACAA
194 ATACACACAATACACTATCTAGTTCAAT-AAGAATTTTATACAAAATTTAGGCTTTAAATTACAA
* * *
7048775 TAAAAGTAGTCATCAACAAGCATAATACACAAAAATAAATAGAAAGCAAAATAAAT
258 TAAAAGCAGTCATCAACAAGCACAATACACAAAAAGAAATAGAAAGCAAAATAAAT
* * * *
7048831 AATAATTTTCACCTTTCACAAAGTCATTGCATCATAATACACATAATACACTATCTAGTTCAATA
1 AATAATTTTCACCATTCACAAAGTCATGGCATCATAATACACACAATACACTACCTAGTTCAATA
*
7048896 AAGAATATCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAATATGCACAATAC
66 AAGAAT-TCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAATAAGCACAATAC
* * * *
7048961 A-AAGCAAGAAACAAAAAGTAAAACATACAACAATTTTCACCTTTTATAAAGTCATTACAT-TGC
130 ATAA-CAAGAAACAAAAAGCAAAACATACAACAATTTTCACCTTTCACAAAGTCATAACATCT-C
* ** * * * *
7049024 AATACACATAATACACTATCTAGTTCAAT-A-TTTTTCTCTCCAACAAATTTTGTGCTTTGAATT
193 AATACACACAATACACTATCTAGTTCAATAAGAATTT-TATAC-A-AAATTTAG-GCTTTAAATT
* * *
7049087 ACTATAAAAGCAGTTCATCAACAAGCACAATACACAATAAGAAATAGAAAGCAAAATACAT
254 ACAATAAAAGCAG-TCATCAACAAGCACAATACACAAAAAGAAATAGAAAGCAAAATAAAT
* * * *
7049148 AATAATTTTCACCATTCATAGAGTTATGGCATCATAATACATACAATACACTACCTAGTTCAATA
1 AATAATTTTCACCATTCACAAAGTCATGGCATCATAATACACACAATACACTACCTAGTTCAATA
* * * * *
7049213 AAAAATTTTCAACAAATTTTATGCTTTGAATTATTGTAACAGTAGTTCA
66 AAGAATTCT-AACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCA
7049262 ACAAAAAACA
Statistics
Matches: 366, Mismatches: 55, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
312 3 0.01
313 4 0.01
314 5 0.01
315 190 0.52
316 23 0.06
317 141 0.39
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (313 bp):
AATAATTTTCACCATTCACAAAGTCATGGCATCATAATACACACAATACACTACCTAGTTCAATA
AAGAATTCTAACAAATTTTATGCTTTGAATTAATATAAAAGTAGTTCATCAATAAGCACAATACA
TAACAAGAAACAAAAAGCAAAACATACAACAATTTTCACCTTTCACAAAGTCATAACATCTCAAT
ACACACAATACACTATCTAGTTCAATAAGAATTTTATACAAAATTTAGGCTTTAAATTACAATAA
AAGCAGTCATCAACAAGCACAATACACAAAAAGAAATAGAAAGCAAAATAAAT
Found at i:7051040 original size:3 final size:3
Alignment explanation
Indices: 7051032--7051179 Score: 141
Period size: 3 Copynumber: 51.7 Consensus size: 3
7051022 AGGATCATTT
*
7051032 TTA TTA TTA TT- TTA TTA -TA TTA -TA TTA GTA TTA -TA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * *
7051075 -TA GTA -TA GTA -TA TTA ATA TTA TAA TAA TAA TAA TATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
7051118 CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
7051166 TTG TTA TTA TTA TT
1 TTA TTA TTA TTA TT
7051180 GTTTTCCTTA
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
2 16 0.13
3 108 0.86
4 2 0.02
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:7051987 original size:6 final size:5
Alignment explanation
Indices: 7051977--7052028 Score: 59
Period size: 5 Copynumber: 10.2 Consensus size: 5
7051967 TTCTTTTTCC
****
7051977 ATTTT ATTTTT ATTTT ATTTT ATTTT AACCC ATTTT ATTTT ATTTT ATTTT
1 ATTTT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
7052028 A
1 A
7052029 ATTAATTTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 33 0.87
6 5 0.13
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (5 bp):
ATTTT
Found at i:7057076 original size:120 final size:119
Alignment explanation
Indices: 7056860--7057148 Score: 303
Period size: 120 Copynumber: 2.4 Consensus size: 119
7056850 ATTATCACTT
* * * * * * *
7056860 ACTTGATCTTGGCTTAGTTCAGATAATTTCTTATGAGTCGTAGTTTTATCTCGATCATTTGTTTT
1 ACTTGATTTTGGCTCAATTCAGATAATTTCTTATGACTCGTAGTTTCATCCCGATCATTTATTTT
* * * *
7056925 CGATCTTGACTCGGTCATGGTCACTTCATTTTGACTCGTGGTTTTTAT-CTCAGTC
66 CGATCTTGACTCGATCATGGTCACTTAATTTTGACTCAT-GATTTTATCCT-AGTC
* *
7056980 ACTTGATTTTGGCTCAATTTAGATAATTTCTTATGACTCGT-GATTTCGTCCCGATCATTTATTT
1 ACTTGATTTTGGCTCAATTCAGATAATTTCTTATGACTCGTAG-TTTCATCCCGATCATTTATTT
** * * * *
7057044 TTTATCTTGACTCGATCTTGTTCACTTAATTTTGACTCATGATTTTGTCCTGGTC
65 TCGATCTTGACTCGATCATGGTCACTTAATTTTGACTCATGATTTTATCCTAGTC
* * * * * * *
7057099 ACTTGATTTTAGCTCAATCCAAATCATTTCTTATGGCTTGTGGTTTCATC
1 ACTTGATTTTGGCTCAATTCAGATAATTTCTTATGACTCGTAGTTTCATC
7057149 TCGGTTATTT
Statistics
Matches: 139, Mismatches: 27, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
119 50 0.36
120 89 0.64
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (119 bp):
ACTTGATTTTGGCTCAATTCAGATAATTTCTTATGACTCGTAGTTTCATCCCGATCATTTATTTT
CGATCTTGACTCGATCATGGTCACTTAATTTTGACTCATGATTTTATCCTAGTC
Found at i:7057535 original size:3 final size:3
Alignment explanation
Indices: 7057527--7057660 Score: 78
Period size: 3 Copynumber: 48.7 Consensus size: 3
7057517 AGGGTCATTT
* *
7057527 TTA TTA TTA TT- TTG TTA -TA TTA -TA TTA TTA GTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
7057571 -TA TTA -TA TTA TTA TTA -TA TTA -TA TTA -AA GTA -TA GTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
7057612 ATA TAA TAA TATA TTA -TA GTA TTA TTA GTA -TA TTA TTA TTA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7057656 TTA TT
1 TTA TT
7057661 TTTGTTTTCC
Statistics
Matches: 106, Mismatches: 11, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
2 25 0.24
3 79 0.75
4 2 0.02
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:7057551 original size:5 final size:5
Alignment explanation
Indices: 7057541--7057656 Score: 90
Period size: 5 Copynumber: 21.8 Consensus size: 5
7057531 TATTATTTTG
*
7057541 TTATA TTATA TTATTA GTATTA TTATA TTATA TTATA TTATTA TTATA
1 TTATA TTATA TTA-TA TTA-TA TTATA TTATA TTATA TTA-TA TTATA
* * * * * *
7057589 TTATA TTAAA GTATA GTATA TTAATA TAATA ATATA TTATA GTATTA TTAGTA
1 TTATA TTATA TTATA TTATA TT-ATA TTATA TTATA TTATA TTA-TA TTA-TA
7057642 -TATTA TTATTA TTAT
1 TTA-TA TTA-TA TTAT
7057657 TATTTTTGTT
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
5 60 0.65
6 32 0.35
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (5 bp):
TTATA
Found at i:7057555 original size:8 final size:8
Alignment explanation
Indices: 7057544--7057659 Score: 76
Period size: 8 Copynumber: 13.8 Consensus size: 8
7057534 TATTTTGTTA
7057544 TATTATAT
1 TATTATAT
7057552 TATTAGTAT
1 TATTA-TAT
7057561 TATTATATT
1 TATTATA-T
7057570 ATATTATAT
1 -TATTATAT
7057579 TATTAT-T
1 TATTATAT
7057586 ATATTATAT
1 -TATTATAT
*
7057595 TA-AAGTA-
1 TATTA-TAT
*
7057602 TAGTATAT
1 TATTATAT
* *
7057610 TAATATAA
1 TATTATAT
*
7057618 TAATATAT
1 TATTATAT
7057626 TATAGTATTAT
1 TAT--TA-TAT
*
7057637 TAGTATAT
1 TATTATAT
7057645 TATTATTAT
1 TATTA-TAT
7057654 TATTAT
1 TATTAT
7057660 TTTTGTTTTC
Statistics
Matches: 88, Mismatches: 8, Indels: 24
0.73 0.07 0.20
Matches are distributed among these distances:
7 6 0.07
8 47 0.53
9 21 0.24
10 9 0.10
11 5 0.06
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (8 bp):
TATTATAT
Found at i:7058004 original size:22 final size:22
Alignment explanation
Indices: 7057979--7058020 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
7057969 TGAAAATTTT
7057979 GGATTTAG-TTTAGGATTTCTGG
1 GGATTTAGTTTTA-GATTTCTGG
7058001 GGATTTAGTTTTAGATTTCT
1 GGATTTAGTTTTAGATTTCT
7058021 AAAGGTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.19, C:0.05, G:0.26, T:0.50
Consensus pattern (22 bp):
GGATTTAGTTTTAGATTTCTGG
Found at i:7058447 original size:19 final size:19
Alignment explanation
Indices: 7058416--7058466 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
7058406 CGATCATAGG
*
7058416 TTTTT-TTTT-TTTTCCTT
1 TTTTTATTTTATTTTCATT
*
7058433 TTTTTATTTTATTTTTATT
1 TTTTTATTTTATTTTCATT
*
7058452 TTTTGATTTTATTTT
1 TTTTTATTTTATTTT
7058467 AACCCATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 20 0.69
ACGTcount: A:0.10, C:0.04, G:0.02, T:0.84
Consensus pattern (19 bp):
TTTTTATTTTATTTTCATT
Found at i:7062200 original size:99 final size:98
Alignment explanation
Indices: 7062009--7062212 Score: 372
Period size: 98 Copynumber: 2.1 Consensus size: 98
7061999 ATTGTAAAAC
*
7062009 ATCATGCGATTGTTTTTGCATACATGAATTTTTTTATAACCAAGTCCAAGTTTTGTCATTTTTTT
1 ATCAT-CGATTGTTTTTGCATACATGAATTTTCTTATAACCAAGTCCAAGTTTTGTCATTTTTTT
7062074 TTTTTATTATTTTATAGAAGCTTTTTTATAATTT
65 TTTTTATTATTTTATAGAAGCTTTTTTATAATTT
7062108 ATCATCGATTGTTTTTGCATACATGAATTTTCTTATAACCAAGTCCAAGTTTTGTCATCTTTTTT
1 ATCATCGATTGTTTTTGCATACATGAATTTTCTTATAACCAAGTCCAAGTTTTGTCAT-TTTTTT
*
7062173 TTTTTTTTATTTTATAGAAGCTTTTTTATAATTT
65 TTTTTATTATTTTATAGAAGCTTTTTTATAATTT
7062207 ATCATC
1 ATCATC
7062213 CACTGGTGAC
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
98 52 0.51
99 50 0.49
ACGTcount: A:0.25, C:0.12, G:0.09, T:0.54
Consensus pattern (98 bp):
ATCATCGATTGTTTTTGCATACATGAATTTTCTTATAACCAAGTCCAAGTTTTGTCATTTTTTTT
TTTTATTATTTTATAGAAGCTTTTTTATAATTT
Found at i:7062242 original size:99 final size:96
Alignment explanation
Indices: 7062025--7062225 Score: 278
Period size: 99 Copynumber: 2.1 Consensus size: 96
7062015 CGATTGTTTT
* **
7062025 TGCATACATGAATTTTTTTATAACCAAGTCCAAGTTTTGTCATTTTTTTTTTTTATTATTTTATA
1 TGCATACATCAATTTACTTATAACCAAGTCCAAGTTTTGTCATTTTTTTTTTTTATTATTTTATA
* * *
7062090 GAAGCTTTTTTATAATTTATCATCGATTGTTTT
66 GAAGCTTTTTTATAATTTATCATCCACTG--TG
* * *
7062123 TGCATACATGAATTTTCTTATAACCAAGTCCAAGTTTTGTCATCTTTTTTTTTTTTTTATTTTAT
1 TGCATACATCAATTTACTTATAACCAAGTCCAAGTTTTGTCAT-TTTTTTTTTTTATTATTTTAT
7062188 AGAAGCTTTTTTATAATTTATCATCCACTG-G
65 AGAAGCTTTTTTATAATTTATCATCCACTGTG
7062219 TGACATA
1 TG-CATA
7062226 TCCTTCACTT
Statistics
Matches: 96, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
96 2 0.02
97 4 0.04
98 42 0.44
99 48 0.50
ACGTcount: A:0.26, C:0.12, G:0.09, T:0.52
Consensus pattern (96 bp):
TGCATACATCAATTTACTTATAACCAAGTCCAAGTTTTGTCATTTTTTTTTTTTATTATTTTATA
GAAGCTTTTTTATAATTTATCATCCACTGTG
Found at i:7062814 original size:29 final size:29
Alignment explanation
Indices: 7062781--7062840 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
7062771 TTCAACCCTA
7062781 ATTGAATCATCATAAAAGTCCAAAAAAAT
1 ATTGAATCATCATAAAAGTCCAAAAAAAT
7062810 ATTGAATCATCATAAAAGTCCAAAAAAAT
1 ATTGAATCATCATAAAAGTCCAAAAAAAT
7062839 AT
1 AT
7062841 AACTCTTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.55, C:0.13, G:0.07, T:0.25
Consensus pattern (29 bp):
ATTGAATCATCATAAAAGTCCAAAAAAAT
Found at i:7064455 original size:10 final size:10
Alignment explanation
Indices: 7064440--7064476 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
7064430 TAAAATTAAA
7064440 AAAATTTTTG
1 AAAATTTTTG
7064450 AAAATTTTTG
1 AAAATTTTTG
7064460 AAAATATTTT-
1 AAAAT-TTTTG
7064470 AAAATTT
1 AAAATTT
7064477 ATAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 2 0.08
10 20 0.77
11 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (10 bp):
AAAATTTTTG
Found at i:7064483 original size:20 final size:20
Alignment explanation
Indices: 7064426--7064488 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
7064416 AATAGATTTA
*
7064426 ATTTTAAAA-TTAAAAAAAT
1 ATTTTAAAATTTATAAAAAT
* *
7064445 -TTTTGAAAATTTTTGAAAAT
1 ATTTT-AAAATTTATAAAAAT
*
7064465 ATTTTAAAATTTATAAAAAA
1 ATTTTAAAATTTATAAAAAT
7064485 ATTT
1 ATTT
7064489 AATTTTAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 4 0.11
19 4 0.11
20 23 0.66
21 4 0.11
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTTAAAATTTATAAAAAT
Found at i:7064557 original size:19 final size:20
Alignment explanation
Indices: 7064530--7064570 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
7064520 TGTTTACAAG
*
7064530 TTATCAAAAAAAATTAAAAA
1 TTATCAAAAAAAACTAAAAA
*
7064550 TTAT-AAAAAATACTAAAAA
1 TTATCAAAAAAAACTAAAAA
7064569 TT
1 TT
7064571 TTATAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (20 bp):
TTATCAAAAAAAACTAAAAA
Found at i:7065081 original size:87 final size:84
Alignment explanation
Indices: 7064975--7065205 Score: 225
Period size: 86 Copynumber: 2.7 Consensus size: 84
7064965 TTTTATTACT
* * *
7064975 TTAAATTTTTTGGATATTTTTTAAAATTTCAAAAACTTTTGAAAATTTTTAAATTTCCTTA-ATT
1 TTAAA-TTTTTAGAAATTTTTTAAAATTTCAAAAATTTTTGAAAATTTTTAAATTT-CTTAGATT
7065039 CTTTTTGC-ATTTTTAAAATTTTC
64 -TTTTT-CAATTTTTAAAA-TTTC
* * * * * *
7065062 TTAAATTTTTAGAAAATTTTTAAATTTTTAAAAATTTTTTGAAAGTTTTTAGATTTTTTAGATTT
1 TTAAATTTTTAGAAATTTTTTAAAATTTCAAAAA-TTTTTGAAAATTTTTAAATTTCTTAGATTT
7065127 TTTTCAAATTTTTAAAATTTC
65 TTTTC-AATTTTTAAAATTTC
* * * *
7065148 TAAAATTTTATAG-AATTTTTTAAAAAATTCTAAAATTTTTTAAAAAATTTTTAAATTT
1 TTAAATTTT-TAGAAATTTTTT-AAAATTTC-AAAAATTTTT-GAAAATTTTTAAATTT
7065206 TTTTGAATTT
Statistics
Matches: 118, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
85 1 0.01
86 51 0.43
87 49 0.42
88 17 0.14
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (84 bp):
TTAAATTTTTAGAAATTTTTTAAAATTTCAAAAATTTTTGAAAATTTTTAAATTTCTTAGATTTT
TTTCAATTTTTAAAATTTC
Found at i:7065155 original size:29 final size:29
Alignment explanation
Indices: 7064992--7065202 Score: 121
Period size: 29 Copynumber: 7.3 Consensus size: 29
7064982 TTTTGGATAT
** *
7064992 TTTTTAAAATTTC-AAAAACTTTTGAAAA
1 TTTTTAAAATTTCTAAAATTTTTTTAAAA
* **
7065020 TTTTT-AAATTTCCT-TAATTCTTTTT-GCA
1 TTTTTAAAATTT-CTAAAATT-TTTTTAAAA
* **
7065048 TTTTTAAAATTTTCTTAAATTTTTAGAAAA
1 TTTTTAAAA-TTTCTAAAATTTTTTTAAAA
* * *
7065078 TTTTT-AAATTTTTAAAAATTTTTTGAAAG
1 TTTTTAAAATTTCT-AAAATTTTTTTAAAA
* * * * *
7065107 TTTTT-AGATTTTTTAGATTTTTTTCAAA
1 TTTTTAAAATTTCTAAAATTTTTTTAAAA
* *
7065135 TTTTTAAAATTTCTAAAA-TTTTATAGAAT
1 TTTTTAAAATTTCTAAAATTTTTTTA-AAA
* *
7065164 TTTTTAAAAAATTCTAAAATTTTTTAAAAAA
1 TTTTT-AAAATTTCTAAAATTTTTT-TAAAA
7065195 TTTTTAAA
1 TTTTTAAA
7065203 TTTTTTTGAA
Statistics
Matches: 138, Mismatches: 32, Indels: 24
0.71 0.16 0.12
Matches are distributed among these distances:
27 6 0.04
28 38 0.28
29 54 0.39
30 28 0.20
31 11 0.08
32 1 0.01
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.54
Consensus pattern (29 bp):
TTTTTAAAATTTCTAAAATTTTTTTAAAA
Found at i:7065221 original size:19 final size:18
Alignment explanation
Indices: 7065193--7065231 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7065183 TTTTTTAAAA
**
7065193 AATTTTTAAATTTTTTTG
1 AATTTTTAAAACTTTTTG
7065211 AATTTTCTAAAACTTTTTG
1 AATTTT-TAAAACTTTTTG
7065230 AA
1 AA
7065232 ATTATTTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (18 bp):
AATTTTTAAAACTTTTTG
Done.