Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 37 of 105
Found at i:7065332 original size:19 final size:20
Alignment explanation
Indices: 7065304--7065356 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
7065294 TTTTTTATTT
*
7065304 TTTTATAATTTTTAAAAAAG
1 TTTTAGAATTTTTAAAAAAG
* **
7065324 TTTT-GAATTTTTATAAATT
1 TTTTAGAATTTTTAAAAAAG
7065343 TTTTAGAATTTTTA
1 TTTTAGAATTTTTA
7065357 TTTGAATTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (20 bp):
TTTTAGAATTTTTAAAAAAG
Found at i:7065436 original size:18 final size:18
Alignment explanation
Indices: 7065413--7065506 Score: 80
Period size: 18 Copynumber: 4.8 Consensus size: 18
7065403 TTTTAGAAAC
*
7065413 ATTTTTGAATTTCTTAAA
1 ATTTTTGAATTTTTTAAA
*
7065431 ATTTTTTTTGAATTTTTTAGA
1 A---TTTTTGAATTTTTTAAA
*
7065452 TTTTTTGAATTTTTTAAA
1 ATTTTTGAATTTTTTAAA
*
7065470 ATTTTTAGAATTATTTTAGA
1 ATTTTT-GAATT-TTTTAAA
*
7065490 TTTTTATCGAATTTTTT
1 ATTTT-T-GAATTTTTT
7065507 TGAAATTTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
18 22 0.35
19 5 0.08
20 14 0.23
21 21 0.34
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (18 bp):
ATTTTTGAATTTTTTAAA
Found at i:7065448 original size:9 final size:9
Alignment explanation
Indices: 7065434--7065506 Score: 60
Period size: 9 Copynumber: 7.7 Consensus size: 9
7065424 TCTTAAAATT
7065434 TTTTTTGAA
1 TTTTTTGAA
7065443 TTTTTT-AGA
1 TTTTTTGA-A
7065452 TTTTTTGAA
1 TTTTTTGAA
*
7065461 TTTTTTAAAA
1 TTTTTT-GAA
*
7065471 TTTTTAGAA
1 TTTTTTGAA
7065480 TTATTTT-AGA
1 TT-TTTTGA-A
7065490 TTTTTATCGAA
1 TTTTT-T-GAA
7065501 TTTTTT
1 TTTTTT
7065507 TGAAATTTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 15
0.73 0.06 0.21
Matches are distributed among these distances:
8 1 0.02
9 28 0.54
10 16 0.31
11 6 0.12
12 1 0.02
ACGTcount: A:0.26, C:0.01, G:0.08, T:0.64
Consensus pattern (9 bp):
TTTTTTGAA
Found at i:7065469 original size:39 final size:40
Alignment explanation
Indices: 7065370--7065515 Score: 138
Period size: 39 Copynumber: 3.5 Consensus size: 40
7065360 GAATTCTAAA
* * *
7065370 TTTTTGTAA-TTTATAAAATATTTTTTAAAATTATTTTAGAAACA
1 TTTTTG-AATTTTTTAAAAT-TTTTTTAGAATTATTTTAG--A-T
* *
7065414 TTTTTGAATTTCTTAAAATTTTTTTTGAATT-TTTTAGAT
1 TTTTTGAATTTTTTAAAATTTTTTTAGAATTATTTTAGAT
7065453 TTTTTGAATTTTTTAAAA--TTTTTAGAATTATTTTAGAT
1 TTTTTGAATTTTTTAAAATTTTTTTAGAATTATTTTAGAT
*
7065491 TTTTATCGAATTTTTTTGAAATTTT
1 TTTT-T-GAA-TTTTTTAAAATTTT
7065516 CCTTTAAAGA
Statistics
Matches: 87, Mismatches: 8, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
37 10 0.11
38 12 0.14
39 18 0.21
40 4 0.05
41 9 0.10
42 6 0.07
43 14 0.16
44 14 0.16
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.60
Consensus pattern (40 bp):
TTTTTGAATTTTTTAAAATTTTTTTAGAATTATTTTAGAT
Found at i:7065486 original size:11 final size:10
Alignment explanation
Indices: 7065048--7065506 Score: 86
Period size: 10 Copynumber: 46.5 Consensus size: 10
7065038 TCTTTTTGCA
*
7065048 TTTTTAAAAT
1 TTTTTAGAAT
7065058 TTTCTTA-AA-
1 TTT-TTAGAAT
*
7065067 TTTTTAGAAAA
1 TTTTTAG-AAT
7065078 TTTTTA-AAT
1 TTTTTAGAAT
* *
7065087 TTTTAAAAAT
1 TTTTTAGAAT
*
7065097 TTTTT-GAAAG
1 TTTTTAG-AAT
7065107 TTTTTAG-AT
1 TTTTTAGAAT
*
7065116 TTTTTAGATT
1 TTTTTAGAAT
7065126 TTTTTCA-AA-
1 TTTTT-AGAAT
*
7065135 TTTTTA-AAA
1 TTTTTAGAAT
* *
7065144 TTTCTAAAAT
1 TTTTTAGAAT
*
7065154 TTTATAGAAT
1 TTTTTAGAAT
* *
7065164 TTTTTAAAAA
1 TTTTTAGAAT
* * *
7065174 ATTCTAAAAT
1 TTTTTAGAAT
* *
7065184 TTTTTAAAAAA
1 TTTTT-AGAAT
7065195 TTTTTA-AAT
1 TTTTTAGAAT
*
7065204 TTTTTTGAAT
1 TTTTTAGAAT
* * *
7065214 TTTCTAAAAC
1 TTTTTAGAAT
7065224 TTTTT-GAAAT
1 TTTTTAG-AAT
*
7065234 TATTTTAGTA-
1 T-TTTTAGAAT
** * *
7065244 TTTCAATAAC
1 TTTTTAGAAT
* *
7065254 TTTTGAAAAT
1 TTTTTAGAAT
7065264 TTTTTAGAAGT
1 TTTTTAGAA-T
* * *
7065275 TTTATAAAAC
1 TTTTTAGAAT
** *
7065285 AATTT--ATT
1 TTTTTAGAAT
** *
7065293 TTTTTTTATT
1 TTTTTAGAAT
*
7065303 TTTTTATAAT
1 TTTTTAGAAT
* * *
7065313 TTTTAAAAAA
1 TTTTTAGAAT
*
7065323 GTTTT-GAAT
1 TTTTTAGAAT
7065332 TTTTATA-AAT
1 TTTT-TAGAAT
7065342 TTTTTAGAATT
1 TTTTTAGAA-T
*
7065353 TTTATTTGAA-
1 TTT-TTAGAAT
*
7065363 -TTCTA-AA-
1 TTTTTAGAAT
7065370 TTTTT-GTAAT
1 TTTTTAG-AAT
* * *
7065380 TTATAAAATAT
1 TTTTTAGA-AT
*
7065391 TTTTTAAAAT
1 TTTTTAGAAT
*
7065401 TATTTTAGAAACA
1 T-TTTTAG-AA-T
7065414 TTTTT-GAAT
1 TTTTTAGAAT
* *
7065423 TTCTTAAAATT
1 TTTTTAGAA-T
*
7065434 TTTTTTGAAT
1 TTTTTAGAAT
7065444 TTTTTAG-AT
1 TTTTTAGAAT
7065453 TTTTT-GAAT
1 TTTTTAGAAT
*
7065462 TTTTTA-AAA
1 TTTTTAGAAT
7065471 TTTTTAGAAT
1 TTTTTAGAAT
7065481 TATTTTAG-AT
1 T-TTTTAGAAT
*
7065491 TTTTATCGAAT
1 TTTT-TAGAAT
7065502 TTTTT
1 TTTTT
7065507 TGAAATTTTC
Statistics
Matches: 325, Mismatches: 82, Indels: 84
0.66 0.17 0.17
Matches are distributed among these distances:
7 2 0.01
8 15 0.05
9 79 0.24
10 146 0.45
11 70 0.22
12 12 0.04
13 1 0.00
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:7065492 original size:19 final size:18
Alignment explanation
Indices: 7065434--7065506 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 18
7065424 TCTTAAAATT
*
7065434 TTTTTTGAATTTTTTAGA
1 TTTTTAGAATTTTTTAGA
* *
7065452 TTTTTTGAATTTTTTAAAA
1 TTTTTAGAATTTTTT-AGA
7065471 TTTTTAGAATTATTTTAGA
1 TTTTTAGAATT-TTTTAGA
7065490 TTTTTATCGAATTTTTT
1 TTTTTA--GAATTTTTT
7065507 TGAAATTTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
18 15 0.31
19 20 0.42
20 8 0.17
21 5 0.10
ACGTcount: A:0.26, C:0.01, G:0.08, T:0.64
Consensus pattern (18 bp):
TTTTTAGAATTTTTTAGA
Found at i:7066500 original size:3 final size:3
Alignment explanation
Indices: 7066484--7066555 Score: 60
Period size: 3 Copynumber: 25.0 Consensus size: 3
7066474 ACTATTATAC
* * *
7066484 ATT ATT A-T AGT ATT ATT AAT ATC ATT ATT ATT ATT A-T ATT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
7066529 ATT TTT ATT TTT ATT TTT ATT TTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
7066556 TTTTTTCTTT
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
2 6 0.11
3 47 0.89
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:7066566 original size:6 final size:6
Alignment explanation
Indices: 7066525--7066558 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
7066515 TATTATATTA
7066525 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
7066559 TTTCTTTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:7067434 original size:22 final size:21
Alignment explanation
Indices: 7067409--7067449 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7067399 CGCAAGGTTT
* *
7067409 TTTTTTGTTTTTTTCATTTTAG
1 TTTTTTATTTTATT-ATTTTAG
7067431 TTTTTTATTTTATTATTTT
1 TTTTTTATTTTATTATTTT
7067450 TGGTTTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.80
Consensus pattern (21 bp):
TTTTTTATTTTATTATTTTAG
Found at i:7072537 original size:22 final size:22
Alignment explanation
Indices: 7072512--7072603 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 22
7072502 GTTCAGACTC
7072512 TTAGGGTTTGGGATTTTGGATT
1 TTAGGGTTTGGGATTTTGGATT
* *
7072534 TTAGGGTTTGGGATCTTAGATT
1 TTAGGGTTTGGGATTTTGGATT
* *
7072556 TTAGGGTTT-CGA----GGTTT
1 TTAGGGTTTGGGATTTTGGATT
**
7072573 TTAGGGTTTAAGATTTTGGATT
1 TTAGGGTTTGGGATTTTGGATT
7072595 TTAGGGTTT
1 TTAGGGTTT
7072604 TAGTTTTTAG
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
17 12 0.21
18 2 0.03
21 2 0.03
22 42 0.72
ACGTcount: A:0.16, C:0.02, G:0.33, T:0.49
Consensus pattern (22 bp):
TTAGGGTTTGGGATTTTGGATT
Found at i:7072626 original size:37 final size:37
Alignment explanation
Indices: 7072532--7072655 Score: 144
Period size: 37 Copynumber: 3.3 Consensus size: 37
7072522 GGATTTTGGA
** * * *
7072532 TTTTAGGGTTTGGGATCTTAGATTTTAGGGTTTCGAGGT
1 TTTTAGGGTTTGAAATTTTGGATTTTAGGGTTT-TA-GT
7072571 TTTTAGGGTTT-AAGATTTTGGATTTTAGGGTTTTAGT
1 TTTTAGGGTTTGAA-ATTTTGGATTTTAGGGTTTTAGT
* *
7072608 TTTTAGGGTTTGAAATTTTGGATTTTAGGG-TTTCGA
1 TTTTAGGGTTTGAAATTTTGGATTTTAGGGTTTTAGT
7072644 TTTTAGGGTTTG
1 TTTTAGGGTTTG
7072656 GGGAGTTTAG
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
36 16 0.21
37 29 0.38
38 3 0.04
39 28 0.37
ACGTcount: A:0.17, C:0.02, G:0.30, T:0.51
Consensus pattern (37 bp):
TTTTAGGGTTTGAAATTTTGGATTTTAGGGTTTTAGT
Found at i:7072647 original size:14 final size:14
Alignment explanation
Indices: 7072628--7072654 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7072618 TGAAATTTTG
7072628 GATTTTAGGGTTTC
1 GATTTTAGGGTTTC
7072642 GATTTTAGGGTTT
1 GATTTTAGGGTTT
7072655 GGGGAGTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.04, G:0.30, T:0.52
Consensus pattern (14 bp):
GATTTTAGGGTTTC
Found at i:7072666 original size:16 final size:16
Alignment explanation
Indices: 7072645--7072682 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7072635 GGGTTTCGAT
7072645 TTTAGGGTTTGG-GGAG
1 TTTAGGGTTTGGAGG-G
7072661 TTTAGGGTTTGGAGGG
1 TTTAGGGTTTGGAGGG
7072677 TTTAGG
1 TTTAGG
7072683 ATTTTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 19 0.90
17 2 0.10
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.39
Consensus pattern (16 bp):
TTTAGGGTTTGGAGGG
Found at i:7072688 original size:76 final size:74
Alignment explanation
Indices: 7072512--7072688 Score: 171
Period size: 76 Copynumber: 2.4 Consensus size: 74
7072502 GTTCAGACTC
* * **
7072512 TTAGGGTTTG-GGATTTTGGATTTTAGGGTTTGGGATCTTAGATTTTAGGGTTTCGAGGTTTTTA
1 TTAGGGTTTGAGGGTTTAGGATTTTAGGGTTTGAAATCTTAGATTTTAGGGTTTCGA-G-TTTTA
7072576 GGGTTTAAGAT
64 GGGTTTAAGAT
* * * * * *
7072587 TTTGGATTTTAGGGTTTTA-GTTTTTAGGGTTTGAAATTTTGGATTTTAGGGTTTCGA-TTTTAG
1 TTAGGGTTTGAGGG-TTTAGGATTTTAGGGTTTGAAATCTTAGATTTTAGGGTTTCGAGTTTTAG
**
7072650 GGTTTGGGGAGT
65 GGTTT-AAGA-T
7072662 TTAGGGTTTGGAGGGTTTAGGATTTTA
1 TTAGGGTTT-GAGGGTTTAGGATTTTA
7072689 ATTTCAGTGT
Statistics
Matches: 80, Mismatches: 16, Indels: 11
0.75 0.15 0.10
Matches are distributed among these distances:
73 11 0.14
74 2 0.03
75 19 0.24
76 45 0.56
77 3 0.04
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (74 bp):
TTAGGGTTTGAGGGTTTAGGATTTTAGGGTTTGAAATCTTAGATTTTAGGGTTTCGAGTTTTAGG
GTTTAAGAT
Found at i:7072710 original size:98 final size:98
Alignment explanation
Indices: 7072512--7072716 Score: 218
Period size: 98 Copynumber: 2.1 Consensus size: 98
7072502 GTTCAGACTC
** * * * **
7072512 TTAGGGTTTGGGATTTTGGATTTTAGGGTTTGGGATCTTAGATTTTAGGGTTTCGAGGTTTTTAG
1 TTAGGGTTTGAAATTTTGGATTTTAGGGTTTGCGATCTTAGATTTGAGGGTTTAGAGGTTTGGAG
* * * *
7072577 GGTTTAAGATTTTGGATTTTAGGGTTTTAGTTT
66 GGTTTAAGATTTTGAATTTCAGGGTTTAAGGTT
* * *
7072610 TTAGGGTTTGAAATTTTGGATTTTAGGGTTT-CGATTTTAGGGTTTGGGGAGTTTAG-GGTTTGG
1 TTAGGGTTTGAAATTTTGGATTTTAGGGTTTGCGATCTTA-GATTTGAGG-GTTTAGAGGTTTGG
* *
7072673 AGGGTTTAGGATTTT-AATTTCAGTGTTTAAAGGTT
64 AGGGTTTAAGATTTTGAATTTCAGGGTTT-AAGGTT
7072708 TTAGGGTTT
1 TTAGGGTTT
7072717 AGTTTTAAGG
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
97 16 0.18
98 67 0.76
99 5 0.06
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (98 bp):
TTAGGGTTTGAAATTTTGGATTTTAGGGTTTGCGATCTTAGATTTGAGGGTTTAGAGGTTTGGAG
GGTTTAAGATTTTGAATTTCAGGGTTTAAGGTT
Found at i:7072717 original size:29 final size:28
Alignment explanation
Indices: 7072675--7072775 Score: 80
Period size: 29 Copynumber: 3.5 Consensus size: 28
7072665 GGGTTTGGAG
*
7072675 GGTTTAGGATTTTAATTTCAGTGTTTAAA
1 GGTTTAGGA-TTTAATTTAAGTGTTTAAA
* *
7072704 GGTTTTAGGGTTTAGTTTTAAG-GTTTAAA
1 GG-TTTAGGATTTA-ATTTAAGTGTTTAAA
* * * *
7072733 GGGTTTAGAGTTTTGATTTTAGTGTTT-GA
1 -GGTTTAG-GATTTAATTTAAGTGTTTAAA
7072762 GGTTTAGGATTTAA
1 GGTTTAGGATTTAA
7072776 GGGTTTGGAT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
27 5 0.09
28 7 0.12
29 24 0.42
30 21 0.37
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.49
Consensus pattern (28 bp):
GGTTTAGGATTTAATTTAAGTGTTTAAA
Found at i:7072723 original size:22 final size:22
Alignment explanation
Indices: 7072697--7072740 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
7072687 TAATTTCAGT
* *
7072697 GTTTAAAGGTTT-TAGGGTTTA
1 GTTTTAAGGTTTAAAGGGTTTA
7072718 GTTTTAAGGTTTAAAGGGTTTA
1 GTTTTAAGGTTTAAAGGGTTTA
7072740 G
1 G
7072741 AGTTTTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (22 bp):
GTTTTAAGGTTTAAAGGGTTTA
Found at i:7072782 original size:22 final size:21
Alignment explanation
Indices: 7072710--7072781 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 21
7072700 TAAAGGTTTT
*
7072710 AGGGTTTAGTTTTAAGG-TTTAA
1 AGGGTTTAGGTTT-AGGATTT-A
* *
7072732 AGGGTTTAGAGTTT-TGATTTT
1 AGGGTTTAG-GTTTAGGATTTA
*
7072753 AGTGTTTGAGGTTTAGGATTTA
1 AGGGTTT-AGGTTTAGGATTTA
7072775 AGGGTTT
1 AGGGTTT
7072782 GGATTTTAGG
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
21 11 0.28
22 25 0.64
23 3 0.08
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (21 bp):
AGGGTTTAGGTTTAGGATTTA
Found at i:7075127 original size:12 final size:12
Alignment explanation
Indices: 7075105--7075138 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
7075095 AGCTAAAAAA
7075105 TTTTG-TTTTGT
1 TTTTGTTTTTGT
7075116 TTTTGTTTTTGT
1 TTTTGTTTTTGT
7075128 TGTTTGTTTTT
1 T-TTTGTTTTT
7075139 TTCGTTACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 5 0.24
12 7 0.33
13 9 0.43
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (12 bp):
TTTTGTTTTTGT
Found at i:7075133 original size:7 final size:6
Alignment explanation
Indices: 7075105--7075138 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
7075095 AGCTAAAAAA
7075105 TTTTG- TTTTGT TTTTGT TTTTGT TGTTTGT TTTT
1 TTTTGT TTTTGT TTTTGT TTTTGT T-TTTGT TTTT
7075139 TTCGTTACCG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 16 0.59
7 6 0.22
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (6 bp):
TTTTGT
Found at i:7075453 original size:36 final size:36
Alignment explanation
Indices: 7075380--7075656 Score: 149
Period size: 36 Copynumber: 7.8 Consensus size: 36
7075370 ATAAGACCAA
* * *
7075380 GATTGAACTACGAGTC--AAGGAATAATGATGATTGG
1 GATTGAACCACGAGTCAAAAGG-ATAAAGATGATCGG
*
7075415 GATTGAACCACAAGTCAAAAGGATAAAGATGATCGG
1 GATTGAACCACGAGTCAAAAGGATAAAGATGATCGG
** * *
7075451 GATTGAACCGTGAGTCAAGAGGATAAAGATGA-CTGA
1 GATTGAACCACGAGTCAAAAGGATAAAGATGATC-GG
* * * *
7075487 GACTGAACCACGAGTCAAGAA-AATAATGATGATCGA
1 GATTGAACCACGAGTCAA-AAGGATAAAGATGATCGG
* * * ** * * * *
7075523 AATTAAATCGTGAGT--TAAGGAATCACGAAGA-CTGG
1 GATTGAACCACGAGTCAAAAGG-ATAAAGATGATC-GG
* * * * * *
7075558 GGTTGAACCGCGAATCAAGAGGATAAAGATGACCGA
1 GATTGAACCACGAGTCAAAAGGATAAAGATGATCGG
* * *
7075594 GATTGAACCGCGAGTC--AAGGAATAACGATGATTGG
1 GATTGAACCACGAGTCAAAAGG-ATAAAGATGATCGG
* *
7075629 GATTGAACCATGAGTCAAGAGGATAAAG
1 GATTGAACCACGAGTCAAAAGGATAAAG
7075657 GCGACCAGAA
Statistics
Matches: 178, Mismatches: 50, Indels: 27
0.70 0.20 0.11
Matches are distributed among these distances:
33 2 0.01
34 4 0.02
35 56 0.31
36 103 0.58
37 13 0.07
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.19
Consensus pattern (36 bp):
GATTGAACCACGAGTCAAAAGGATAAAGATGATCGG
Found at i:7075576 original size:71 final size:70
Alignment explanation
Indices: 7075412--7075715 Score: 239
Period size: 71 Copynumber: 4.3 Consensus size: 70
7075402 TAATGATGAT
* * * ** * * * * *
7075412 TGGGATTGAACCACAAGTCAAAAGGATAAAGATGATCGGGATTGAACCGTGAGTCAAGAGGATAA
1 TGGGGTTGAACCACGAGTCAAGAGGATAAAGATGA-CGAAATTAAACCGCGAGTTAAG-GAATCA
* *
7075477 AGATGAC
64 CGAAGAC
* ** ** * * *
7075484 TGAGACTGAACCACGAGTCAAGAAAATAATGATGATCGAAATTAAATCGTGAGTTAAGGAATCAC
1 TGGGGTTGAACCACGAGTCAAGAGGATAAAGATGA-CGAAATTAAACCGCGAGTTAAGGAATCAC
7075549 GAAGAC
65 GAAGAC
* * * * * *
7075555 TGGGGTTGAACCGCGAATCAAGAGGATAAAGATGACCGAGATTGAACCGCGAGTCAAGGAATAAC
1 TGGGGTTGAACCACGAGTCAAGAGGATAAAGATGA-CGAAATTAAACCGCGAGTTAAGGAATCAC
* *
7075620 GATGAT
65 GAAGAC
* * ** * * *
7075626 TGGGATTGAACCATGAGTCAAGAGGATAAAGGCGACCAGAATTAAACCGCAAGTTAAGGAGTCAC
1 TGGGGTTGAACCACGAGTCAAGAGGATAAAGATGACGA-AATTAAACCGCGAGTTAAGGAATCAC
7075691 GAAGAC
65 GAAGAC
*
7075697 TGGGGTTGAATCACGAGTC
1 TGGGGTTGAACCACGAGTC
7075716 CAGAATATAA
Statistics
Matches: 180, Mismatches: 51, Indels: 3
0.77 0.22 0.01
Matches are distributed among these distances:
70 2 0.01
71 132 0.73
72 46 0.26
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.18
Consensus pattern (70 bp):
TGGGGTTGAACCACGAGTCAAGAGGATAAAGATGACGAAATTAAACCGCGAGTTAAGGAATCACG
AAGAC
Found at i:7075675 original size:107 final size:107
Alignment explanation
Indices: 7075374--7075656 Score: 316
Period size: 107 Copynumber: 2.6 Consensus size: 107
7075364 AGAATAATAA
* * ** *
7075374 GACCAAGATTGAACTACGAGTCAAGGAATAATGATGATTGGGATTGAACCACAAGTCAAAAGGAT
1 GACCGAGATTGAACCACGAGTCAAGGAATAATGATGATTGGGATTGAACCATGAGTCAAGAGGAT
* * * *
7075439 AAAGATGATCGGGATTGAACCGTGAGTCAAGAGGATAAAGAT
66 AAAGAAGACCGGGATTGAACCGCGAATCAAGAGGATAAAGAT
* * * * ** * * * * *
7075481 GACTGAGACTGAACCACGAGTCAAGAAAATAATGATGATCGAAATTAAATCGTGAGTTAAG-GAA
1 GACCGAGATTGAACCACGAGTCAAG-GAATAATGATGATTGGGATTGAACCATGAGTCAAGAGGA
* * * *
7075545 TCACGAAGACTGGGGTTGAACCGCGAATCAAGAGGATAAAGAT
65 TAAAGAAGACCGGGATTGAACCGCGAATCAAGAGGATAAAGAT
* *
7075588 GACCGAGATTGAACCGCGAGTCAAGGAATAACGATGATTGGGATTGAACCATGAGTCAAGAGGAT
1 GACCGAGATTGAACCACGAGTCAAGGAATAATGATGATTGGGATTGAACCATGAGTCAAGAGGAT
7075653 AAAG
66 AAAG
7075657 GCGACCAGAA
Statistics
Matches: 135, Mismatches: 39, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
106 26 0.19
107 85 0.63
108 24 0.18
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.19
Consensus pattern (107 bp):
GACCGAGATTGAACCACGAGTCAAGGAATAATGATGATTGGGATTGAACCATGAGTCAAGAGGAT
AAAGAAGACCGGGATTGAACCGCGAATCAAGAGGATAAAGAT
Found at i:7075691 original size:142 final size:143
Alignment explanation
Indices: 7075412--7075715 Score: 353
Period size: 142 Copynumber: 2.1 Consensus size: 143
7075402 TAATGATGAT
* * * * *
7075412 TGGGATTGAACCACAAGTCAAAAGGATAAAGATGATCGGGATTGAACCGTGAGTCAAGAGGATAA
1 TGGGGTTGAACCACAAGTCAAAAGGATAAAGATGACCGAGATTGAACCGCGAGTCAAGAGAATAA
* * * * **
7075477 AGATGACTGAGACTGAACCACGAGTCAAGAAAATAATGATGATCGAAATTAAATCGTGAGTTAAG
66 AGATGACTGAGACTGAACCACGAGTCAAGAAAATAAAGACGACCGAAATTAAACCGCAAGTTAAG
7075542 GAATCACGAAGAC
131 GAATCACGAAGAC
* *
7075555 TGGGGTTGAACCGCGAA-TCAAGAGGATAAAGATGACCGAGATTGAACCGCGAGTCAAG-GAATA
1 TGGGGTTGAACCAC-AAGTCAAAAGGATAAAGATGACCGAGATTGAACCGCGAGTCAAGAGAATA
* * * * * ** *
7075618 ACGATGATTGGGATTGAACCATGAGTCAAGAGGATAAAGGCGACC-AGAATTAAACCGCAAGTTA
65 AAGATGACTGAGACTGAACCACGAGTCAAGAAAATAAAGACGACCGA-AATTAAACCGCAAGTTA
*
7075682 AGGAGTCACGAAGAC
129 AGGAATCACGAAGAC
* *
7075697 TGGGGTTGAATCACGAGTC
1 TGGGGTTGAACCACAAGTC
7075716 CAGAATATAA
Statistics
Matches: 133, Mismatches: 25, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
141 2 0.02
142 80 0.60
143 49 0.37
144 2 0.02
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.18
Consensus pattern (143 bp):
TGGGGTTGAACCACAAGTCAAAAGGATAAAGATGACCGAGATTGAACCGCGAGTCAAGAGAATAA
AGATGACTGAGACTGAACCACGAGTCAAGAAAATAAAGACGACCGAAATTAAACCGCAAGTTAAG
GAATCACGAAGAC
Found at i:7075873 original size:34 final size:33
Alignment explanation
Indices: 7075835--7076087 Score: 202
Period size: 34 Copynumber: 7.4 Consensus size: 33
7075825 TTAAATCATA
*
7075835 AGTCAAAGAATAATAAGATTAGGATTGAACCGTG
1 AGTCAAA-AATAATAAGATCAGGATTGAACCGTG
* * * * *
7075869 AGTCAAAAAATAATGATGATCAAGATTAAATCGTA
1 AGTC-AAAAATAAT-AAGATCAGGATTGAACCGTG
*
7075904 AGTCAAAGAATAATAAGATCAGAATTGAACCGTG
1 AGTCAAA-AATAATAAGATCAGGATTGAACCGTG
* * * **
7075938 AGTCAAAAAATAATGATGATCAAGATTAAACCACG
1 AGTC-AAAAATAAT-AAGATCAGGATTGAACCGTG
* * *
7075973 AGTCAGAGAATAATGAGATC-GAGATTGAACCGCG
1 AGTCA-AAAATAATAAGATCAG-GATTGAACCGTG
* * * *
7076007 AGTCATAAAATACTGACGATCAGGATTAAATCGTG
1 AGTCA-AAAATAAT-AAGATCAGGATTGAACCGTG
* **
7076042 AGTCAAAAATAATAAAATCAGGATTGAACTATG
1 AGTCAAAAATAATAAGATCAGGATTGAACCGTG
7076075 AGTCATAAAATAA
1 AGTCA-AAAATAA
7076088 CGATGACTAG
Statistics
Matches: 170, Mismatches: 39, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
33 19 0.11
34 77 0.45
35 73 0.43
36 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (33 bp):
AGTCAAAAATAATAAGATCAGGATTGAACCGTG
Found at i:7075917 original size:69 final size:69
Alignment explanation
Indices: 7075823--7076093 Score: 339
Period size: 69 Copynumber: 3.9 Consensus size: 69
7075813 TGACTACCGG
*
7075823 GATTAAATCATAAGTCAAAGAATAATAAGATTAGGATTGAACCGTGAGTCAAAAAATAATGATGA
1 GATTAAATCATAAGTCAAAGAATAATAAGATCAGGATTGAACCGTGAGTCAAAAAATAATGATGA
7075888 TCAA
66 TCAA
* *
7075892 GATTAAATCGTAAGTCAAAGAATAATAAGATCAGAATTGAACCGTGAGTCAAAAAATAATGATGA
1 GATTAAATCATAAGTCAAAGAATAATAAGATCAGGATTGAACCGTGAGTCAAAAAATAATGATGA
7075957 TCAA
66 TCAA
* ** * * * * * *
7075961 GATTAAACCACGAGTCAGAGAATAATGAGATC-GAGATTGAACCGCGAGTCATAAAATACTGACG
1 GATTAAATCATAAGTCAAAGAATAATAAGATCAG-GATTGAACCGTGAGTCAAAAAATAATGATG
*
7076025 ATCAG
65 ATCAA
* * * ** * *
7076030 GATTAAATCGTGAGTCAAA-AATAATAAAATCAGGATTGAACTATGAGTCATAAAATAACGATGA
1 GATTAAATCATAAGTCAAAGAATAATAAGATCAGGATTGAACCGTGAGTCAAAAAATAATGATGA
7076094 CTAGGATTAA
Statistics
Matches: 173, Mismatches: 27, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
68 36 0.21
69 137 0.79
ACGTcount: A:0.47, C:0.11, G:0.19, T:0.23
Consensus pattern (69 bp):
GATTAAATCATAAGTCAAAGAATAATAAGATCAGGATTGAACCGTGAGTCAAAAAATAATGATGA
TCAA
Found at i:7076113 original size:35 final size:34
Alignment explanation
Indices: 7075919--7076114 Score: 121
Period size: 35 Copynumber: 5.7 Consensus size: 34
7075909 AAGAATAATA
* * ** * *
7075919 AGATCAGAATTGAACCGTGAGTCAAAAAATAATG
1 AGATCAGGATTAAACCACGAGTCATAAAATAACG
* * * *
7075953 ATGATCAAGATTAAACCACGAGTCAGAGAATAATG
1 A-GATCAGGATTAAACCACGAGTCATAAAATAACG
* *
7075988 AGATC-GAGATTGAACCGCGAGTCATAAAAT-ACTG
1 AGATCAG-GATTAAACCACGAGTCATAAAATAAC-G
* ** **
7076022 ACGATCAGGATTAAATCGTGAGTCA-AAAATAATA
1 A-GATCAGGATTAAACCACGAGTCATAAAATAACG
* * * *
7076056 AAATCAGGATTGAACTATGAGTCATAAAATAACG
1 AGATCAGGATTAAACCACGAGTCATAAAATAACG
7076090 ATGA-CTAGGATTAAACCACGAGTCA
1 A-GATC-AGGATTAAACCACGAGTCA
7076115 GGAATAAGTT
Statistics
Matches: 124, Mismatches: 29, Indels: 17
0.73 0.17 0.10
Matches are distributed among these distances:
33 19 0.15
34 41 0.33
35 63 0.51
36 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.21
Consensus pattern (34 bp):
AGATCAGGATTAAACCACGAGTCATAAAATAACG
Found at i:7077488 original size:10 final size:9
Alignment explanation
Indices: 7077473--7077558 Score: 68
Period size: 10 Copynumber: 9.0 Consensus size: 9
7077463 AATCACTTCC
7077473 CTTTTTTTCT
1 CTTTTTTT-T
7077483 CTTTTTTTT
1 CTTTTTTTT
*
7077492 -TTTATATTT
1 CTTT-TTTTT
*
7077501 -TTTTTCTT
1 CTTTTTTTT
7077509 CTTTTTTTT
1 CTTTTTTTT
7077518 CTTCTTTTTT
1 CTT-TTTTTT
*
7077528 GTATTTTTTT
1 CT-TTTTTTT
7077538 ACATTTTTTCTT
1 -C-TTTTTT-TT
7077550 CTTTTTTTT
1 CTTTTTTTT
7077559 TTAAGCAAAA
Statistics
Matches: 63, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.10
9 20 0.32
10 27 0.43
11 7 0.11
12 3 0.05
ACGTcount: A:0.06, C:0.12, G:0.01, T:0.81
Consensus pattern (9 bp):
CTTTTTTTT
Found at i:7077520 original size:12 final size:12
Alignment explanation
Indices: 7077473--7077527 Score: 69
Period size: 12 Copynumber: 4.6 Consensus size: 12
7077463 AATCACTTCC
7077473 CTTTTTTTCTCTT
1 CTTTTTTT-TCTT
7077486 -TTTTTTTT-TAT
1 CTTTTTTTTCT-T
*
7077497 ATTTTTTTTCTT
1 CTTTTTTTTCTT
7077509 CTTTTTTTTCTT
1 CTTTTTTTTCTT
7077521 CTTTTTT
1 CTTTTTT
7077528 GTATTTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
10 1 0.03
11 2 0.05
12 34 0.89
13 1 0.03
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.84
Consensus pattern (12 bp):
CTTTTTTTTCTT
Found at i:7077537 original size:12 final size:12
Alignment explanation
Indices: 7077474--7077560 Score: 60
Period size: 11 Copynumber: 7.6 Consensus size: 12
7077464 ATCACTTCCC
*
7077474 TTTTTTTCTCTT
1 TTTTTTTCTATT
*
7077486 TTTTTTTTTATAT
1 TTTTTTTCTAT-T
7077499 TTTTTTTCT-TCT
1 TTTTTTTCTAT-T
7077511 TTTTTTTC--TT
1 TTTTTTTCTATT
* *
7077521 CTTTTTTGTA-T
1 TTTTTTTCTATT
*
7077532 TTTTTTAC-ATT
1 TTTTTTTCTATT
*
7077543 TTTTCTTCT-TT
1 TTTTTTTCTATT
7077554 TTTTTTT
1 TTTTTTT
7077561 AAGCAAAATA
Statistics
Matches: 58, Mismatches: 12, Indels: 11
0.72 0.15 0.14
Matches are distributed among these distances:
10 8 0.14
11 22 0.38
12 19 0.33
13 9 0.16
ACGTcount: A:0.06, C:0.10, G:0.01, T:0.83
Consensus pattern (12 bp):
TTTTTTTCTATT
Found at i:7078316 original size:15 final size:16
Alignment explanation
Indices: 7078286--7078318 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7078276 AAGAAAACTC
7078286 AAAAAGGAAAAGAAAT
1 AAAAAGGAAAAGAAAT
*
7078302 AAAATGGAAAA-AAAT
1 AAAAAGGAAAAGAAAT
7078317 AA
1 AA
7078319 TGATTCAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (16 bp):
AAAAAGGAAAAGAAAT
Found at i:7078555 original size:57 final size:58
Alignment explanation
Indices: 7078494--7078717 Score: 244
Period size: 58 Copynumber: 3.9 Consensus size: 58
7078484 AAAAGTTGGT
* * * * *
7078494 ACTTTCAACTTTTTCTC-AAAATGTTTTTCT-AAAACTTTAATTTCGAGAAAAATTGAA
1 ACTTTCAACTTTTCCTCAAAAATATTTTT-TAAAAACTTTATTTTCAAGGAAAATTGAA
* * * * *
7078551 ACTTTTAAATTTTTCTCAAAAATATTTTTTAAAAAATTTATTTTTAAGGAAAATTG-A
1 ACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAACTTTATTTTCAAGGAAAATTGAA
* * *
7078608 TCTTTCAACTTTTCCTCGAAAATATTTTTTAGAAAAC-TTATTTTCAAGGAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAATATTTTTTA-AAAACTTTATTTTCAAGGAAAATTGAA
* * *
7078666 ACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAATTTTATTTT-AA-GAAAAT
1 ACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAACTTTATTTTCAAGGAAAAT
7078718 CATTTTAAAA
Statistics
Matches: 141, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
56 6 0.04
57 66 0.47
58 69 0.49
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (58 bp):
ACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAACTTTATTTTCAAGGAAAATTGAA
Found at i:7078607 original size:58 final size:58
Alignment explanation
Indices: 7078476--7078717 Score: 235
Period size: 57 Copynumber: 4.2 Consensus size: 58
7078466 TTAAAACATT
** * * *
7078476 TTTTTAA-GAAAAGTTGGTACTTTCAACTTTTTCTC-AAAATGTTTTTCT-AAAACTTTA
1 TTTTTAAGGAAAA-TTGAAACTTTCAACTTTTCCTCAAAAATATTTTT-TAAAAAATTTA
* ** * * * *
7078533 ATTTCGAGAAAAATTGAAACTTTTAAATTTTTCTCAAAAATATTTTTTAAAAAATTTA
1 TTTTTAAGGAAAATTGAAACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAAATTTA
* * * *
7078591 TTTTTAAGGAAAATTG-ATCTTTCAACTTTTCCTCGAAAATATTTTTTAGAAAACTTA
1 TTTTTAAGGAAAATTGAAACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAAATTTA
* * * * *
7078648 TTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAATTTTA
1 TTTTTAAGGAAAATTGAAACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAAATTTA
7078706 -TTTTAA-GAAAAT
1 TTTTTAAGGAAAAT
7078718 CATTTTAAAA
Statistics
Matches: 150, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
56 6 0.04
57 77 0.51
58 67 0.45
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.45
Consensus pattern (58 bp):
TTTTTAAGGAAAATTGAAACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAAATTTA
Found at i:7078636 original size:115 final size:113
Alignment explanation
Indices: 7078476--7078717 Score: 292
Period size: 115 Copynumber: 2.1 Consensus size: 113
7078466 TTAAAACATT
* * * *
7078476 TTTTTAAGAAAAGTTGGTACTTTCAACTTTTTCTCAAAATGTTTTTCT-AAAACTTTAATTTCGA
1 TTTTTAAGAAAA-TTGATACTTTCAACTTTTCCTCAAAATATTTTT-TAAAAAC-TTAATTTCAA
* *
7078540 GAAAAATTGAAACTTTTAAATTTTTCTCAAAAATATTTTTTAAAAAATTTA
63 GAAAAATTGAAACTTTCAAATTTTCCTCAAAAATATTTTTTAAAAAATTTA
*
7078591 TTTTTAAGGAAAATTGAT-CTTTCAACTTTTCCTCGAAAATATTTTTTAGAAAACTTATTTTCAA
1 TTTTTAA-GAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTA-AAAACTTAATTTCAA
* * * * * *
7078655 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAGAATTTTA
63 GAAAAATTGAAACTTTCAAATTTTCCTCAAAAATATTTTTTAAAAAATTTA
7078706 -TTTTAAGAAAAT
1 TTTTTAAGAAAAT
7078718 CATTTTAAAA
Statistics
Matches: 110, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
113 6 0.05
114 22 0.20
115 72 0.65
116 10 0.09
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.45
Consensus pattern (113 bp):
TTTTTAAGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTAAAAACTTAATTTCAAGAA
AAATTGAAACTTTCAAATTTTCCTCAAAAATATTTTTTAAAAAATTTA
Found at i:7078755 original size:5 final size:6
Alignment explanation
Indices: 7078725--7078752 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7078715 AATCATTTTA
7078725 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
7078753 TAAGGAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:7078797 original size:3 final size:3
Alignment explanation
Indices: 7078778--7078843 Score: 78
Period size: 3 Copynumber: 21.0 Consensus size: 3
7078768 TATTCTAATC
* *
7078778 TAA TCAA TAA GTAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA AAA
1 TAA T-AA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
7078825 TAAA TAA TAA TAA AAA TAA
1 T-AA TAA TAA TAA TAA TAA
7078844 ATAAGAAAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
3 45 0.83
4 9 0.17
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:7079298 original size:11 final size:11
Alignment explanation
Indices: 7079284--7079314 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7079274 AAAAAAACTC
7079284 TAAAAAATTTT
1 TAAAAAATTTT
*
7079295 TAAAAAAATTT
1 TAAAAAATTTT
7079306 TAAAAAATT
1 TAAAAAATT
7079315 CTAAACATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
TAAAAAATTTT
Found at i:7079300 original size:12 final size:11
Alignment explanation
Indices: 7079274--7079312 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7079264 ATTTTCCAGA
* *
7079274 AAAAAAACTCT
1 AAAAAAATTTT
*
7079285 AAAAAATTTTT
1 AAAAAAATTTT
7079296 AAAAAAATTTT
1 AAAAAAATTTT
7079307 AAAAAA
1 AAAAAA
7079313 TTCTAAACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (11 bp):
AAAAAAATTTT
Found at i:7079326 original size:22 final size:22
Alignment explanation
Indices: 7079274--7079328 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
7079264 ATTTTCCAGA
* * *
7079274 AAAAAAACTCTAAAAAATTTTT
1 AAAAAAATTTTAAAAAATTTCT
7079296 AAAAAAATTTTAAAAAA-TTCT
1 AAAAAAATTTTAAAAAATTTCT
*
7079317 AAACATAATTTT
1 AAA-AAAATTTT
7079329 GCTTCTGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (22 bp):
AAAAAAATTTTAAAAAATTTCT
Found at i:7079586 original size:44 final size:44
Alignment explanation
Indices: 7079540--7079685 Score: 197
Period size: 44 Copynumber: 3.3 Consensus size: 44
7079530 GCTCAACAAC
*
7079540 TTTGAAAAAATAAACAAAGCTCCTCTAATCAGAGGCTCT-ACGACT
1 TTTG-AAAAATAAACAAAGCTCCTCTAAACAGAGGCT-TAACGACT
** *
7079585 TTTGAAAAATAAACAAAGCTTTTCTAAACAGAGGCTTAATGACT
1 TTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTTAACGACT
* *
7079629 TTTGAAAAATAAACAAGGCTCCTCTAAACAGAGGCTTAAAGAC-
1 TTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTTAACGACT
7079672 TTTGAAAAAATAAA
1 TTTG-AAAAATAAA
7079686 TTGCTCCTTG
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
43 5 0.05
44 82 0.90
45 4 0.04
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.25
Consensus pattern (44 bp):
TTTGAAAAATAAACAAAGCTCCTCTAAACAGAGGCTTAACGACT
Found at i:7080704 original size:12 final size:12
Alignment explanation
Indices: 7080689--7080720 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7080679 TTTTTCATTC
7080689 CCTTTTTTTTTT
1 CCTTTTTTTTTT
7080701 CCTTTTTTTTTT
1 CCTTTTTTTTTT
7080713 -CTTTTTTT
1 CCTTTTTTT
7080721 AAGCATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
CCTTTTTTTTTT
Found at i:7087541 original size:57 final size:57
Alignment explanation
Indices: 7087468--7087629 Score: 186
Period size: 57 Copynumber: 2.8 Consensus size: 57
7087458 ATTTTTTTTA
** * *
7087468 AAGAAAAATT-AGTACTTCCAACTTTTCC-CCAAAATGTTTTTCT-GAAACTTTAATTTC
1 AAGAAAAATTGA-TACTTTTAACTTTTCCTCAAAAATGTTTTT-TAGAAA-ATTAATTTC
* *
7087525 GAGAAAAATTGATACTTTTAACTTTTCCTCAAAAATGTTTTTTAGAAAATTATTTTC
1 AAGAAAAATTGATACTTTTAACTTTTCCTCAAAAATGTTTTTTAGAAAATTAATTTC
* * *
7087582 AAGGAAAATTGATACTTTTAACTTTTCTTCAAAAATATTTTTTTAGAA
1 AAGAAAAATTGATACTTTTAACTTTTCCTCAAAAAT-GTTTTTTAGAA
7087630 TTTTATTTTA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
57 64 0.70
58 27 0.30
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (57 bp):
AAGAAAAATTGATACTTTTAACTTTTCCTCAAAAATGTTTTTTAGAAAATTAATTTC
Found at i:7087636 original size:58 final size:55
Alignment explanation
Indices: 7087529--7087646 Score: 173
Period size: 57 Copynumber: 2.1 Consensus size: 55
7087519 AATTTCGAGA
7087529 AAAATTGATACTTTTAACTTTTCCTCAAAAATGTTTTTTAGAAAATTATTTTCAAGG
1 AAAATTGATACTTTTAACTTTTCCTCAAAAATGTTTTTTAGAAAATTATTTT-AA-G
* * **
7087586 AAAATTGATACTTTTAACTTTTCTTCAAAAATATTTTTTTAGAATTTTATTTTAAG
1 AAAATTGATACTTTTAACTTTTCCTCAAAAAT-GTTTTTTAGAAAATTATTTTAAG
7087642 AAAAT
1 AAAAT
7087647 CATTTAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
56 6 0.11
57 33 0.59
58 17 0.30
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (55 bp):
AAAATTGATACTTTTAACTTTTCCTCAAAAATGTTTTTTAGAAAATTATTTTAAG
Found at i:7087676 original size:17 final size:18
Alignment explanation
Indices: 7087654--7087689 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
7087644 AATCATTTAA
7087654 AAAAATAAAATAA-GAAT
1 AAAAATAAAATAAGGAAT
7087671 AAAAATAAAATAAGGAAT
1 AAAAATAAAATAAGGAAT
7087689 A
1 A
7087690 CCAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (18 bp):
AAAAATAAAATAAGGAAT
Found at i:7087725 original size:3 final size:3
Alignment explanation
Indices: 7087706--7087773 Score: 109
Period size: 3 Copynumber: 22.0 Consensus size: 3
7087696 TATTCTAATC
*
7087706 TAA TCAA TAA GTAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA
1 TAA T-AA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7087753 TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
7087774 ATAAGACAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
3 55 0.90
4 6 0.10
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:7088208 original size:35 final size:35
Alignment explanation
Indices: 7088166--7088232 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
7088156 TTCGTCGAAT
*
7088166 TCTAAAAAATTTCCAAAAATTTTTAAAAAAAAAAC
1 TCTAAAAAATTTCAAAAAATTTTTAAAAAAAAAAC
* *
7088201 TCTAAAAAATTTGAAAAAATTTTTTAAAAAAA
1 TCTAAAAAATTTCAAAAAATTTTTAAAAAAAA
7088233 TTCTAAACAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.31
Consensus pattern (35 bp):
TCTAAAAAATTTCAAAAAATTTTTAAAAAAAAAAC
Found at i:7088523 original size:36 final size:36
Alignment explanation
Indices: 7088467--7088556 Score: 105
Period size: 36 Copynumber: 2.6 Consensus size: 36
7088457 ATCAATCAAG
* *
7088467 ATAAAAT-AAAAAGTACATATTAATAATTAATAGATA
1 ATAAAATAAAAAAATACATATTAATAAATAATA-ATA
* *
7088503 A-ATAATAAAAAAATATATATTAATAAATAATAATA
1 ATAAAATAAAAAAATACATATTAATAAATAATAATA
*
7088538 ATAAAATAAAATAA-ACATA
1 ATAAAATAAAAAAATACATA
7088557 CAAAATGGGC
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
35 12 0.27
36 33 0.73
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (36 bp):
ATAAAATAAAAAAATACATATTAATAAATAATAATA
Found at i:7099761 original size:22 final size:22
Alignment explanation
Indices: 7099734--7099825 Score: 79
Period size: 22 Copynumber: 4.4 Consensus size: 22
7099724 GTTCAGACTC
*
7099734 TTAGGGTTTGGGATTTTGGATT
1 TTAGGGTTTGAGATTTTGGATT
*
7099756 TTAGGGTTTGAGATTTTAGATT
1 TTAGGGTTTGAGATTTTGGATT
* *
7099778 TTAGCGTTTCG-G--GTT---TT
1 TTAGGGTTT-GAGATTTTGGATT
*
7099795 TTAGGGTTTGAGATTTTGGCTT
1 TTAGGGTTTGAGATTTTGGATT
*
7099817 TTAGTGTTT
1 TTAGGGTTT
7099826 CAATTTTAGG
Statistics
Matches: 56, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
16 1 0.02
17 11 0.20
19 2 0.04
20 2 0.04
22 39 0.70
23 1 0.02
ACGTcount: A:0.14, C:0.03, G:0.30, T:0.52
Consensus pattern (22 bp):
TTAGGGTTTGAGATTTTGGATT
Found at i:7099900 original size:13 final size:14
Alignment explanation
Indices: 7099882--7100008 Score: 59
Period size: 13 Copynumber: 8.9 Consensus size: 14
7099872 GTTTGGGGAG
7099882 TTTAGGGTTT-AGT
1 TTTAGGGTTTAAGT
* *
7099895 TTTAGGGTTTTGAGGG
1 TTTAGGG-TTT-AAGT
7099911 TTTA-GGTTTCAA-T
1 TTTAGGGTTT-AAGT
7099924 TTT-GGGTTTAAAGGT
1 TTTAGGGTTT-AA-GT
7099939 TTTAGGGTTT-AGT
1 TTTAGGGTTTAAGT
*
7099952 TTTAAGGTTTGAAGGGT
1 TTTAGGGTTT-AA--GT
* * *
7099969 TTGAGGTTTTGA-T
1 TTTAGGGTTTAAGT
* *
7099982 TTTAGTGTTTAAGG
1 TTTAGGGTTTAAGT
*
7099996 TTTAGGATTTAAG
1 TTTAGGGTTTAAG
7100009 CGTTTGGATT
Statistics
Matches: 84, Mismatches: 18, Indels: 23
0.67 0.14 0.18
Matches are distributed among these distances:
13 37 0.44
14 19 0.23
15 7 0.08
16 12 0.14
17 9 0.11
ACGTcount: A:0.20, C:0.01, G:0.31, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTAAGT
Found at i:7099904 original size:29 final size:28
Alignment explanation
Indices: 7099852--7100006 Score: 111
Period size: 29 Copynumber: 5.4 Consensus size: 28
7099842 AATTTAGGAT
* * *
7099852 TTTAGGGTTTTGATTTTGGGGTTTGGGGAG
1 TTTAGGGTTTAG-TTTTAGGGTTTGAGG-G
7099882 TTTAGGGTTTAGTTTTAGGGTTTTGAGGG
1 TTTAGGGTTTAGTTTTAGGG-TTTGAGGG
* * *
7099911 TTTA-GGTTTCAATTTT-GGGTTTAAAGGT
1 TTTAGGGTTT-AGTTTTAGGGTTT-GAGGG
*
7099939 TTTAGGGTTTAGTTTTAAGGTTTGAAGGG
1 TTTAGGGTTTAGTTTTAGGGTTTG-AGGG
* * *
7099968 TTT-GAGGTTTTGATTTTAGTGTTT-AAGG
1 TTTAG-GGTTTAG-TTTTAGGGTTTGAGGG
*
7099996 TTTAGGATTTA
1 TTTAGGGTTTA
7100007 AGCGTTTGGA
Statistics
Matches: 100, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
27 3 0.03
28 31 0.31
29 40 0.40
30 26 0.26
ACGTcount: A:0.17, C:0.01, G:0.33, T:0.49
Consensus pattern (28 bp):
TTTAGGGTTTAGTTTTAGGGTTTGAGGG
Found at i:7099953 original size:21 final size:22
Alignment explanation
Indices: 7099929--7099970 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
7099919 TCAATTTTGG
*
7099929 GTTTAAAGGTTT-TAGGGTTTA
1 GTTTAAAGGTTTGAAGGGTTTA
*
7099950 GTTTTAAGGTTTGAAGGGTTT
1 GTTTAAAGGTTTGAAGGGTTT
7099971 GAGGTTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (22 bp):
GTTTAAAGGTTTGAAGGGTTTA
Found at i:7100000 original size:57 final size:56
Alignment explanation
Indices: 7099881--7100006 Score: 157
Period size: 57 Copynumber: 2.2 Consensus size: 56
7099871 GGTTTGGGGA
*
7099881 GTTTAGGGTTTAGTTTTAGGGTTTTGAGGGTTTAGGTTTCAATTTTGGGTTTAAAG
1 GTTTAGGGTTTAGTTTTAAGGTTTTGAGGGTTTAGGTTTCAATTTTGGGTTTAAAG
** *
7099937 GTTTTAGGGTTTAGTTTTAAGG-TTTGAAGGGTTTGAGGTTTTGATTTTAGTGTTT-AAG
1 G-TTTAGGGTTTAGTTTTAAGGTTTTG-AGGGTTT-AGGTTTCAATTTT-GGGTTTAAAG
*
7099995 GTTTAGGATTTA
1 GTTTAGGGTTTA
7100007 AGCGTTTGGA
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
56 5 0.08
57 36 0.59
58 15 0.25
59 5 0.08
ACGTcount: A:0.19, C:0.01, G:0.31, T:0.49
Consensus pattern (56 bp):
GTTTAGGGTTTAGTTTTAAGGTTTTGAGGGTTTAGGTTTCAATTTTGGGTTTAAAG
Found at i:7104074 original size:22 final size:23
Alignment explanation
Indices: 7104049--7104094 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7104039 ATGCTTATAA
*
7104049 TCACGATA-AAAGATAATAAAAT
1 TCACGAAATAAAGATAATAAAAT
* *
7104071 TCACTAAATAAAGATATTAAAAT
1 TCACGAAATAAAGATAATAAAAT
7104094 T
1 T
7104095 TACAATTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.28
Consensus pattern (23 bp):
TCACGAAATAAAGATAATAAAAT
Found at i:7104263 original size:17 final size:19
Alignment explanation
Indices: 7104235--7104273 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
7104225 CTAACAAATC
7104235 TTTAAGTAATATGCACA-T
1 TTTAAGTAATATGCACACT
*
7104253 TTTAA-TAATATTCACACT
1 TTTAAGTAATATGCACACT
7104271 TTT
1 TTT
7104274 TTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (19 bp):
TTTAAGTAATATGCACACT
Found at i:7104666 original size:7 final size:7
Alignment explanation
Indices: 7104654--7104689 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
7104644 TTGTGTTAAC
7104654 TCACATG
1 TCACATG
7104661 TCACATG
1 TCACATG
7104668 TCACATG
1 TCACATG
7104675 TCACATG
1 TCACATG
7104682 TCACATG
1 TCACATG
7104689 T
1 T
7104690 TGGCACTAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (7 bp):
TCACATG
Found at i:7105621 original size:34 final size:34
Alignment explanation
Indices: 7105583--7105652 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
7105573 TAAAAGATAG
7105583 TATTCAATAGATTTAAGATTTAAATCTCAACACT
1 TATTCAATAGATTTAAGATTTAAATCTCAACACT
7105617 TATTCAATAGATTTAAGATTTAAATCTCAACACT
1 TATTCAATAGATTTAAGATTTAAATCTCAACACT
7105651 TA
1 TA
7105653 AGCCTAGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (34 bp):
TATTCAATAGATTTAAGATTTAAATCTCAACACT
Found at i:7106737 original size:62 final size:63
Alignment explanation
Indices: 7106635--7106759 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 63
7106625 TAAGAAACTT
* *
7106635 ACATGGCATTTTTAAAATTAGTTTTTACCAAAAATCCAAATCATCAAAATCCAAACAATTAAA
1 ACATGGCATTTTTAAAATTAGATTTTACCAAAAATCCAAATCATCAAAATACAAACAATTAAA
* *
7106698 ACATGGCAATTTTT-AAATTA-ATTTTACCAAAAATTCAAATTATCAAAATACAAACAATTAAA
1 ACATGGC-ATTTTTAAAATTAGATTTTACCAAAAATCCAAATCATCAAAATACAAACAATTAAA
7106760 TGATAAATTT
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
62 38 0.67
63 13 0.23
64 6 0.11
ACGTcount: A:0.50, C:0.15, G:0.04, T:0.31
Consensus pattern (63 bp):
ACATGGCATTTTTAAAATTAGATTTTACCAAAAATCCAAATCATCAAAATACAAACAATTAAA
Found at i:7107594 original size:31 final size:30
Alignment explanation
Indices: 7107548--7107608 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 30
7107538 TAATTAAATT
7107548 TTAAATTAAAATAAAATAATATTTTATTTA
1 TTAAATTAAAATAAAATAATATTTTATTTA
* *
7107578 TTAAACTTTAAATAAAATAGTATTTTATTTA
1 TTAAA-TTAAAATAAAATAATATTTTATTTA
7107609 CTACTAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (30 bp):
TTAAATTAAAATAAAATAATATTTTATTTA
Found at i:7107749 original size:2 final size:2
Alignment explanation
Indices: 7107742--7107771 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7107732 TAGCCCAATC
7107742 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7107772 ACATAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7117603 original size:20 final size:20
Alignment explanation
Indices: 7117578--7117615 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7117568 TAGAATGGAT
7117578 ATTTAATTTTA-AATTAATCC
1 ATTTAA-TTTAGAATTAATCC
7117598 ATTTAATTTAGAATTAAT
1 ATTTAATTTAGAATTAAT
7117616 TGATAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (20 bp):
ATTTAATTTAGAATTAATCC
Found at i:7120690 original size:22 final size:22
Alignment explanation
Indices: 7120664--7120707 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7120654 AATTTCTATC
**
7120664 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAAAGATACAAATA
7120686 CTTAATTCTAAAGATACAAATA
1 CTTAATTCTAAAGATACAAATA
7120708 TAAATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAAAGATACAAATA
Found at i:7124603 original size:26 final size:26
Alignment explanation
Indices: 7124548--7124597 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
7124538 CTCTAATACC
7124548 ATGTGAAAAAGCTAAGAAATAAAACT
1 ATGTGAAAAAGCTAAGAAATAAAACT
*
7124574 ATGTGAAAAA-CTAAG-AGTAAAACT
1 ATGTGAAAAAGCTAAGAAATAAAACT
7124598 GAATGTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 5 0.22
26 10 0.43
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (26 bp):
ATGTGAAAAAGCTAAGAAATAAAACT
Found at i:7131760 original size:82 final size:82
Alignment explanation
Indices: 7131665--7131831 Score: 307
Period size: 82 Copynumber: 2.0 Consensus size: 82
7131655 ATTTTCAATA
* *
7131665 TTACTAAACATGAGTTGTGACAAAAACATTAAAGCTAATTAACTTAGCAAGTCTTAATAATAGCA
1 TTACTAAACATGAGTTGTGACAAAAACATTAAAGCTAATTAACCTAGCAAGCCTTAATAATAGCA
7131730 CATTTTAGTTTAAACTT
66 CATTTTAGTTTAAACTT
*
7131747 TTACTAAATATGAGTTGTGACAAAAACATTAAAGCTAATTAACCTAGCAAGCCTTAATAATAGCA
1 TTACTAAACATGAGTTGTGACAAAAACATTAAAGCTAATTAACCTAGCAAGCCTTAATAATAGCA
7131812 CATTTTAGTTTAAACTT
66 CATTTTAGTTTAAACTT
7131829 TTA
1 TTA
7131832 ATATTTTGAA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (82 bp):
TTACTAAACATGAGTTGTGACAAAAACATTAAAGCTAATTAACCTAGCAAGCCTTAATAATAGCA
CATTTTAGTTTAAACTT
Found at i:7134772 original size:2 final size:2
Alignment explanation
Indices: 7134765--7134789 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7134755 AAACTCAATT
7134765 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
7134790 AAGATGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7137226 original size:154 final size:152
Alignment explanation
Indices: 7136921--7137229 Score: 415
Period size: 154 Copynumber: 2.0 Consensus size: 152
7136911 GAATATATTA
* * *
7136921 TCATTCTATAGTTATAGGATGGTTAATAAATTATCTTATACAATTACCTGCCTAATGGGGTTAAT
1 TCATTCTATAATTATAGGATGGTTAATAAATTATCTTATACAATTACATGCCTAAAGGGGTTAAT
* * ** *
7136986 GTCTAGGGTAATTTTTTTTTAACATAAAGCATCATGGTTGAGGTGTACTGGTCTAAAAAATTTAT
66 GTCTAAGGTAATTTTTTTTGAACATAAAGCATCATGGTTGAGGTGTACTAATCTAAAAAATCTAT
* *
7137051 TTGTCCAAAGGAGATAAGTTTT
131 TTGTCCAAAAGAAATAAGTTTT
*
7137073 TCATTCTATAATTACTA-GATGGTTACTAAATTATCTTATACAATTACATGCCTAAAAGGGGTTA
1 TCATTCTATAATTA-TAGGATGGTTAATAAATTATCTTATACAATTACATGCCT-AAAGGGGTTA
* * * * *
7137137 ATGTGTAAGGTAATTTGTTTTTGAACTTAAAGCATCATGGTTGAGGTTTA-TCAATTTAGAAAAT
64 ATGTCTAAGGTAATTT-TTTTTGAACATAAAGCATCATGGTTGAGGTGTACT-AATCTAAAAAAT
*
7137201 CTATTTGTCCAAAAGAAATAGGTTTT
127 CTATTTGTCCAAAAGAAATAAGTTTT
7137227 TCA
1 TCA
7137230 AAAACTTGGA
Statistics
Matches: 136, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
152 47 0.35
153 26 0.19
154 63 0.46
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (152 bp):
TCATTCTATAATTATAGGATGGTTAATAAATTATCTTATACAATTACATGCCTAAAGGGGTTAAT
GTCTAAGGTAATTTTTTTTGAACATAAAGCATCATGGTTGAGGTGTACTAATCTAAAAAATCTAT
TTGTCCAAAAGAAATAAGTTTT
Found at i:7141362 original size:21 final size:20
Alignment explanation
Indices: 7141334--7141378 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
7141324 TAAAGTTAAG
*
7141334 GATTTTGTGAAAAACAGTAA
1 GATTTTGTCAAAAACAGTAA
* *
7141354 GATTATTGTCAAACACATTAA
1 GATT-TTGTCAAAAACAGTAA
7141375 GATT
1 GATT
7141379 GACAATATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (20 bp):
GATTTTGTCAAAAACAGTAA
Found at i:7143279 original size:17 final size:16
Alignment explanation
Indices: 7143257--7143290 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7143247 ATTTGATAAC
7143257 TTTTGATATAATTTTGA
1 TTTTGATA-AATTTTGA
*
7143274 TTTTGATAACTTTTGA
1 TTTTGATAAATTTTGA
7143290 T
1 T
7143291 AAAATTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.26, C:0.03, G:0.12, T:0.59
Consensus pattern (16 bp):
TTTTGATAAATTTTGA
Found at i:7143304 original size:21 final size:21
Alignment explanation
Indices: 7143280--7143325 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
7143270 TTGATTTTGA
*
7143280 TAACTTTTGATAAAATTTTAG
1 TAACTTTCGATAAAATTTTAG
* *
7143301 TAACTTTCGATATAATTTTGG
1 TAACTTTCGATAAAATTTTAG
7143322 TAAC
1 TAAC
7143326 CTCTAGTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.46
Consensus pattern (21 bp):
TAACTTTCGATAAAATTTTAG
Found at i:7144084 original size:17 final size:16
Alignment explanation
Indices: 7144042--7144097 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 16
7144032 AAAAACTAAA
* *
7144042 AAAAAATTGGAAGATTC
1 AAAAAATTGCAAGA-AC
7144059 AACAAAATTGCAAGAAC
1 AA-AAAATTGCAAGAAC
7144076 AGAAAAATTGCAAGAAC
1 A-AAAAATTGCAAGAAC
7144093 AAAAA
1 AAAAA
7144098 CTGATTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 4 0.11
17 19 0.54
18 12 0.34
ACGTcount: A:0.61, C:0.11, G:0.14, T:0.14
Consensus pattern (16 bp):
AAAAAATTGCAAGAAC
Found at i:7146041 original size:22 final size:22
Alignment explanation
Indices: 7146016--7146057 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7146006 CTTAGCTATC
7146016 AATGATATATTGCTAAATTATT
1 AATGATATATTGCTAAATTATT
* *
7146038 AATGATTTATTGCTTAATTA
1 AATGATATATTGCTAAATTA
7146058 GCATTAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (22 bp):
AATGATATATTGCTAAATTATT
Found at i:7146184 original size:22 final size:23
Alignment explanation
Indices: 7146159--7146226 Score: 84
Period size: 22 Copynumber: 2.9 Consensus size: 23
7146149 TTAATTTGCT
7146159 ACTAAATTATCAATGATTTAC-A
1 ACTAAATTATCAATGATTTACTA
* *
7146181 ACTAAATTAGCATTGTTATTTACTA
1 ACTAAATTATCAATG--ATTTACTA
*
7146206 ACTAAATTATCAATAATTTAC
1 ACTAAATTATCAATGATTTAC
7146227 CGTAAAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
22 13 0.34
23 6 0.16
24 6 0.16
25 13 0.34
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (23 bp):
ACTAAATTATCAATGATTTACTA
Found at i:7146525 original size:40 final size:41
Alignment explanation
Indices: 7146451--7146529 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 41
7146441 ACTTTAAAGT
* *
7146451 TTTCAATGAATTAACTGCTTAAATTATTAATAATTTATTAG
1 TTTCAATGAATTAACTACTTAAATTATCAATAATTTATTAG
*
7146492 TTTCAAATG-ATTAACTAC-TAAATTATCATTAATTTATT
1 TTTC-AATGAATTAACTACTTAAATTATCAATAATTTATT
7146530 GCTAAGTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 18 0.53
41 12 0.35
42 4 0.12
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.47
Consensus pattern (41 bp):
TTTCAATGAATTAACTACTTAAATTATCAATAATTTATTAG
Found at i:7146643 original size:22 final size:22
Alignment explanation
Indices: 7146594--7146652 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
7146584 AAACTGAAGT
* * * *
7146594 ACTATTGAGTTATCATTTATTT
1 ACTATTAAGTTATCAGTGATTA
*
7146616 ATTATTAAGTTATCAGTGATTA
1 ACTATTAAGTTATCAGTGATTA
7146638 ACTATTAAGTTATCA
1 ACTATTAAGTTATCA
7146653 CTTGTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.08, G:0.10, T:0.47
Consensus pattern (22 bp):
ACTATTAAGTTATCAGTGATTA
Found at i:7147814 original size:12 final size:11
Alignment explanation
Indices: 7147797--7147852 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
7147787 TAAGGGAAGA
7147797 AAAAAAGAAAGG
1 AAAAAAGAAA-G
*
7147809 AAAAAA-ATAG
1 AAAAAAGAAAG
*
7147819 AAAAAATAAAAG
1 AAAAAA-GAAAG
*
7147831 AAAAAAGGAAAA
1 AAAAAA-GAAAG
7147843 AAAAAAGAAA
1 AAAAAAGAAA
7147853 AAGTTTATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
10 7 0.19
11 6 0.16
12 24 0.65
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:7147820 original size:23 final size:22
Alignment explanation
Indices: 7147797--7147854 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 22
7147787 TAAGGGAAGA
* *
7147797 AAAAAAGAAAGGAAAAAAATAG
1 AAAAAATAAAAGAAAAAAATAG
*
7147819 AAAAAATAAAAG-AAAAAA-GG
1 AAAAAATAAAAGAAAAAAATAG
7147839 AAAAAA-AAAAGAAAAA
1 AAAAAATAAAAGAAAAA
7147855 GTTTATATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 5 0.16
20 11 0.34
21 6 0.19
22 10 0.31
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (22 bp):
AAAAAATAAAAGAAAAAAATAG
Found at i:7147840 original size:30 final size:31
Alignment explanation
Indices: 7147796--7147854 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
7147786 ATAAGGGAAG
*
7147796 AAAAAAAGAAAGG-AAAAAAATAGAAAAAAT
1 AAAAAAAGAAAGGAAAAAAAAAAGAAAAAAT
7147826 AAAAGAAA-AAAGGAAAAAAAAAAGAAAAA
1 AAAA-AAAGAAAGGAAAAAAAAAAGAAAAA
7147855 GTTTATATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.35
31 17 0.65
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (31 bp):
AAAAAAAGAAAGGAAAAAAAAAAGAAAAAAT
Found at i:7147854 original size:12 final size:12
Alignment explanation
Indices: 7147796--7147855 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 12
7147786 ATAAGGGAAG
7147796 AAAAAAAGAAAGGA
1 AAAAAAAGAAA--A
7147810 AAAAAATAGAAAA
1 AAAAAA-AGAAAA
*
7147823 AATAAAAGAAAA
1 AAAAAAAGAAAA
7147835 AAGGAAAAA-AAAA
1 AA--AAAAAGAAAA
*
7147848 AGAAAAAG
1 AAAAAAAG
7147856 TTTATATGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
11 5 0.13
12 8 0.21
13 11 0.28
14 10 0.26
15 5 0.13
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:7149298 original size:3 final size:3
Alignment explanation
Indices: 7149290--7149318 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7149280 TTTCTTAACA
7149290 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7149319 GGTAAATTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:7150410 original size:16 final size:17
Alignment explanation
Indices: 7150389--7150435 Score: 69
Period size: 16 Copynumber: 2.8 Consensus size: 17
7150379 TCATGCTATT
* *
7150389 TTTCATGCTGTTTTT-G
1 TTTCATGCTATTTTTAA
7150405 TTTCATGCTATTTTTAA
1 TTTCATGCTATTTTTAA
7150422 TTTCATGCTATTTT
1 TTTCATGCTATTTT
7150436 ATGAGCCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
16 14 0.50
17 14 0.50
ACGTcount: A:0.15, C:0.13, G:0.11, T:0.62
Consensus pattern (17 bp):
TTTCATGCTATTTTTAA
Found at i:7154740 original size:21 final size:21
Alignment explanation
Indices: 7154714--7154769 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
7154704 TGAATAATTT
7154714 TTTAAAAAGATTTTGCAAGAAA
1 TTTAAAAAGATTTTG-AAGAAA
* *
7154736 -TTAAACAGA-TATGAAGAAA
1 TTTAAAAAGATTTTGAAGAAA
7154755 TTTACAAAAGATTTT
1 TTTA-AAAAGATTTT
7154770 AGTTGAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
19 6 0.22
20 6 0.22
21 13 0.48
22 2 0.07
ACGTcount: A:0.50, C:0.05, G:0.12, T:0.32
Consensus pattern (21 bp):
TTTAAAAAGATTTTGAAGAAA
Found at i:7156768 original size:29 final size:29
Alignment explanation
Indices: 7156724--7156779 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
7156714 TAGGTTCAAG
*
7156724 ATTCCACACTTGACTTTTTTCATATTGTT
1 ATTCCACACTTAACTTTTTTCATATTGTT
7156753 ATTCCACACTTAACTTTTTTCATATTG
1 ATTCCACACTTAACTTTTTTCATATTG
7156780 GTTCAATTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.50
Consensus pattern (29 bp):
ATTCCACACTTAACTTTTTTCATATTGTT
Found at i:7170133 original size:36 final size:36
Alignment explanation
Indices: 7170078--7170146 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
7170068 GGGCATAATC
7170078 CCCAAGACCTCCAAGCATCAAGATGAGAAATTTATT
1 CCCAAGACCTCCAAGCATCAAGATGAGAAATTTATT
*
7170114 CCCAAGACCTTCGAA-CATCAAGATGAGAAATTT
1 CCCAAGACC-TCCAAGCATCAAGATGAGAAATTT
7170147 GTTGCTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
36 27 0.87
37 4 0.13
ACGTcount: A:0.39, C:0.25, G:0.14, T:0.22
Consensus pattern (36 bp):
CCCAAGACCTCCAAGCATCAAGATGAGAAATTTATT
Found at i:7170760 original size:46 final size:44
Alignment explanation
Indices: 7170708--7170853 Score: 127
Period size: 46 Copynumber: 3.2 Consensus size: 44
7170698 TCATGGTAGG
*
7170708 ATTTTTAAAATTGTGCAGCCTCTTATAAGAGAAGCTTTTTAAATTT
1 ATTTTTAAAATTGTG-AGCCTCTGATAAGAGAAG-TTTTTAAATTT
* * * *
7170754 ATTTTTAAAAGTTGTGAAACCTCTGACGAA-AGGAGTTTTTAGATTTT
1 ATTTTTAAAA-TTGTG-AGCCTCTGA-TAAGAGAAGTTTTTA-AATTT
* * *
7170801 TTTTTTCAACTTGTAGAGCCTCTGATAAGA-AGAGTTTTT-AATTT
1 ATTTTTAAAATTGT-GAGCCTCTGATAAGAGA-AGTTTTTAAATTT
7170845 ATTTTTAAA
1 ATTTTTAAA
7170854 GTGATAAAGT
Statistics
Matches: 79, Mismatches: 15, Indels: 14
0.73 0.14 0.13
Matches are distributed among these distances:
44 11 0.14
45 2 0.03
46 36 0.46
47 28 0.35
48 2 0.03
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.44
Consensus pattern (44 bp):
ATTTTTAAAATTGTGAGCCTCTGATAAGAGAAGTTTTTAAATTT
Found at i:7171152 original size:19 final size:18
Alignment explanation
Indices: 7171106--7171153 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
7171096 AAAAAATTTT
7171106 CAAAAAAAAATCTAAAAA
1 CAAAAAAAAATCTAAAAA
7171124 -AAAAGTAAAAATCATAAAAA
1 CAAAA--AAAAATC-TAAAAA
7171144 CAAAAAAAAA
1 CAAAAAAAAA
7171154 AGAAAATTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.15
19 12 0.46
20 6 0.23
21 4 0.15
ACGTcount: A:0.79, C:0.08, G:0.02, T:0.10
Consensus pattern (18 bp):
CAAAAAAAAATCTAAAAA
Found at i:7171167 original size:25 final size:27
Alignment explanation
Indices: 7171119--7171168 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7171109 AAAAAAATCT
*
7171119 AAAAAAAAAGTAAAAATCATAAAAACA
1 AAAAAAAAAGTAAAAATCACAAAAACA
*
7171146 AAAAAAAAAG-AAAATTC-CAAAAA
1 AAAAAAAAAGTAAAAATCACAAAAA
7171169 AAGTCAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 6 0.29
27 10 0.48
ACGTcount: A:0.78, C:0.08, G:0.04, T:0.10
Consensus pattern (27 bp):
AAAAAAAAAGTAAAAATCACAAAAACA
Found at i:7172501 original size:26 final size:25
Alignment explanation
Indices: 7172459--7172508 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
7172449 AGTCAGTAGG
* * *
7172459 GAGAAAGGGAAAAAAAATAAAAGAA
1 GAGAAAAGAAAAAAAAAAAAAAGAA
7172484 GAGAAAAGAAAAAGAAAAAAAAAGA
1 GAGAAAAGAAAAA-AAAAAAAAAGA
7172509 GGCCTATTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (25 bp):
GAGAAAAGAAAAAAAAAAAAAAGAA
Found at i:7172563 original size:17 final size:17
Alignment explanation
Indices: 7172529--7172578 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
7172519 ATCTTGACGT
7172529 GAAAAAAG--GAAAAGAA
1 GAAAAAAGAAGAAAAG-A
7172545 GAAAAAAAGACAGAAAAGA
1 G-AAAAAAGA-AGAAAAGA
*
7172564 GAAAAGAGAAGAAAA
1 GAAAAAAGAAGAAAA
7172579 ATAAAGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 1 0.03
17 13 0.45
18 7 0.24
19 2 0.07
20 6 0.21
ACGTcount: A:0.74, C:0.02, G:0.24, T:0.00
Consensus pattern (17 bp):
GAAAAAAGAAGAAAAGA
Found at i:7172573 original size:26 final size:26
Alignment explanation
Indices: 7172532--7172608 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
7172522 TTGACGTGAA
*
7172532 AAAAG-GAAAAGAAGAAAAAAAGACAG
1 AAAAGAGAAAAG-AGAAAAAAAGAAAG
*
7172558 AAAAGAGAAAAGAGAAGAAAAATAAAG
1 AAAAGAGAAAAGAGAA-AAAAAGAAAG
* *
7172585 AAAATAAAAACAAGAGAAAAAAAG
1 AAAA-GAGAA-AAGAGAAAAAAAG
7172609 TTTGAAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 9 0.21
27 18 0.43
28 8 0.19
29 7 0.17
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (26 bp):
AAAAGAGAAAAGAGAAAAAAAGAAAG
Found at i:7174647 original size:22 final size:22
Alignment explanation
Indices: 7174619--7174687 Score: 93
Period size: 22 Copynumber: 3.1 Consensus size: 22
7174609 GATTGACAAT
* *
7174619 TAAGCTATCAGTTATTTACTAC
1 TAAGCTATCAATGATTTACTAC
*
7174641 TAAGCTATTAATGATTTACTAC
1 TAAGCTATCAATGATTTACTAC
**
7174663 TAAATTATCAATGATTTACTAC
1 TAAGCTATCAATGATTTACTAC
7174685 TAA
1 TAA
7174688 TTATGAATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (22 bp):
TAAGCTATCAATGATTTACTAC
Found at i:7174861 original size:30 final size:27
Alignment explanation
Indices: 7174817--7174897 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
7174807 ATTTAATAAC
* * *
7174817 AAATTATCAATGATTAACTAATTTACTACT
1 AAATTATTATTGATTAAC-AA-CTAC-ACT
* *
7174847 AAATTATTATTGATTTACAACTACGCT
1 AAATTATTATTGATTAACAACTACACT
*
7174874 AAATTATTATTGATTTACAACTAC
1 AAATTATTATTGATTAACAACTAC
7174898 GTTATTAGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.57
28 3 0.07
29 2 0.04
30 15 0.33
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (27 bp):
AAATTATTATTGATTAACAACTACACT
Found at i:7174862 original size:22 final size:22
Alignment explanation
Indices: 7174837--7175187 Score: 110
Period size: 22 Copynumber: 15.8 Consensus size: 22
7174827 TGATTAACTA
7174837 ATTTACTACTAAATTATTATTG
1 ATTTACTACTAAATTATTATTG
7174859 ATTTACAACTACGCTAAATTATTATTG
1 ATTT---ACTA--CTAAATTATTATTG
* **
7174886 ATTTACAACTACGTTATTAGTT-
1 ATTTACTACTAAATTATTA-TTG
* ** *
7174908 ATTTACTATTATGTTATTAGTG
1 ATTTACTACTAAATTATTATTG
*
7174930 ATTTACTACTTAATT-TTCAATT-
1 ATTTACTACTAAATTATT--ATTG
* ***
7174952 ATTTACTA-TAAAGTTATCACCA
1 ATTTACTACTAAA-TTATTATTG
7174974 ATTTACTACTAAATTATCTATT-
1 ATTTACTACTAAATTAT-TATTG
* * * *
7174996 ATTCAATACCAAGTTATTATTG
1 ATTTACTACTAAATTATTATTG
* * * * *
7175018 ACTTA-TAGTAAGTTATGCA-TA
1 ATTTACTACTAAATTAT-TATTG
* * * *
7175039 ATTTACTATTAAGTTATCACTG
1 ATTTACTACTAAATTATTATTG
* * * ** * *
7175061 ATTAAATATTATTTTATCAATG
1 ATTTACTACTAAATTATTATTG
* *
7175083 ATTTACTACTAAGTTA-TATTT
1 ATTTACTACTAAATTATTATTG
** * *
7175104 ATTTACTTTTAAATTTTTAATG
1 ATTTACTACTAAATTATTATTG
* * *
7175126 A-TTACATATTAGATTATCAATT-
1 ATTTAC-TACTAAATTAT-TATTG
* * *
7175148 ATTTATTACTAATTTATCATTG
1 ATTTACTACTAAATTATTATTG
*
7175170 ATTTACTACTAAGTTATT
1 ATTTACTACTAAATTATT
7175188 TATAATTTAT
Statistics
Matches: 242, Mismatches: 64, Indels: 46
0.69 0.18 0.13
Matches are distributed among these distances:
21 48 0.20
22 154 0.64
23 15 0.06
24 3 0.01
25 4 0.02
27 18 0.07
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (22 bp):
ATTTACTACTAAATTATTATTG
Found at i:7174883 original size:27 final size:27
Alignment explanation
Indices: 7174845--7174898 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
7174835 TAATTTACTA
7174845 CTAAATTATTATTGATTTACAACTACG
1 CTAAATTATTATTGATTTACAACTACG
7174872 CTAAATTATTATTGATTTACAACTACG
1 CTAAATTATTATTGATTTACAACTACG
7174899 TTATTAGTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.41
Consensus pattern (27 bp):
CTAAATTATTATTGATTTACAACTACG
Found at i:7175108 original size:65 final size:66
Alignment explanation
Indices: 7175026--7175186 Score: 173
Period size: 65 Copynumber: 2.5 Consensus size: 66
7175016 TGACTTATAG
* * **
7175026 TAAGTTATGCA-TAATTTACTATTAAGTTATCACTGATTAAATATTATTTTATCAATGATTTACT
1 TAAGTTAT-CATTGATTTACTATTAAGTTATCAATGATTAAATATTAGATTATCAATGATTTACT
7175090 AC
65 AC
* * * * * * * *
7175092 TAAGTTAT-ATTTATTTACTTTTAAATTTTTAATGATTACATATTAGATTATCAATTATTTATTA
1 TAAGTTATCATTGATTTACTATTAAGTTATCAATGATTAAATATTAGATTATCAATGATTTACTA
7175156 C
66 C
* *
7175157 TAATTTATCATTGATTTACTACTAAGTTAT
1 TAAGTTATCATTGATTTACTATTAAGTTAT
7175187 TTATAATTTA
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
64 1 0.01
65 51 0.67
66 24 0.32
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (66 bp):
TAAGTTATCATTGATTTACTATTAAGTTATCAATGATTAAATATTAGATTATCAATGATTTACTA
C
Found at i:7175420 original size:22 final size:22
Alignment explanation
Indices: 7175395--7175443 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7175385 TTATTATTAT
* *
7175395 ATTATTACTGATTTACTAAAAA
1 ATTATTAATGATTGACTAAAAA
* *
7175417 ATTATTAATTATTGACTAATAA
1 ATTATTAATGATTGACTAAAAA
7175439 ATTAT
1 ATTAT
7175444 CATTCATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (22 bp):
ATTATTAATGATTGACTAAAAA
Found at i:7175456 original size:22 final size:21
Alignment explanation
Indices: 7175405--7175466 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
7175395 ATTATTACTG
*
7175405 ATTTACTAAAAAATTATTAATT
1 ATTTACTAATAAATTA-TAATT
* *
7175427 ATTGACTAATAAATTATCATT
1 ATTTACTAATAAATTATAATT
*
7175448 CATTTACTATTAAATTATA
1 -ATTTACTAATAAATTATA
7175467 CTAATTACAC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 4 0.12
22 29 0.88
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTTACTAATAAATTATAATT
Found at i:7179453 original size:32 final size:34
Alignment explanation
Indices: 7179417--7179481 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 34
7179407 TTTATTTAAA
*
7179417 TTAAACTTAAA-TAATTAA-TAAAAATTTTATAT
1 TTAAACATAAATTAATTAATTAAAAATTTTATAT
* * *
7179449 TTAAAGATAAATTTATTAATTTAAAATTTTATA
1 TTAAACATAAATTAATTAATTAAAAATTTTATA
7179482 ATGGTATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 9 0.33
33 6 0.22
34 12 0.44
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (34 bp):
TTAAACATAAATTAATTAATTAAAAATTTTATAT
Found at i:7181547 original size:161 final size:161
Alignment explanation
Indices: 7181282--7181603 Score: 608
Period size: 161 Copynumber: 2.0 Consensus size: 161
7181272 TCTAGTTGCT
*
7181282 CATATATCAAATGAAAATGTATGATTACATTCTAAATATTTGCAAATATCCTCAAGAAACCAATA
1 CATATATCAAATGAAAATGTATGATTACATTCTAAATATTTGCAAATATCCTAAAGAAACCAATA
*
7181347 TGACTGTGGTAACGTAAAACTTTTTCAACCTAAAAGGAAAGATAAGACCACAGTGATAATTGCCC
66 TGACTGTGGTAAAGTAAAACTTTTTCAACCTAAAAGGAAAGATAAGACCACAGTGATAATTGCCC
7181412 ATTTTAGTTTGTCATCTCTCAGATGATTAGC
131 ATTTTAGTTTGTCATCTCTCAGATGATTAGC
*
7181443 CATATATCAAATGACAATGTATGATTACATTCTAAATATTTGCAAATATCCTAAAGAAACCAATA
1 CATATATCAAATGAAAATGTATGATTACATTCTAAATATTTGCAAATATCCTAAAGAAACCAATA
*
7181508 TGACTGTGGTAAAGTAAAACTTTTTCAACCTAAAAGGAAAGATAAGACCGCAGTGATAATTGCCC
66 TGACTGTGGTAAAGTAAAACTTTTTCAACCTAAAAGGAAAGATAAGACCACAGTGATAATTGCCC
7181573 ATTTTAGTTTGTCATCTCTCAGATGATTAGC
131 ATTTTAGTTTGTCATCTCTCAGATGATTAGC
7181604 AAGCAGAAAC
Statistics
Matches: 157, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
161 157 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (161 bp):
CATATATCAAATGAAAATGTATGATTACATTCTAAATATTTGCAAATATCCTAAAGAAACCAATA
TGACTGTGGTAAAGTAAAACTTTTTCAACCTAAAAGGAAAGATAAGACCACAGTGATAATTGCCC
ATTTTAGTTTGTCATCTCTCAGATGATTAGC
Found at i:7185479 original size:16 final size:16
Alignment explanation
Indices: 7185460--7185492 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7185450 TTAAACTAAT
7185460 ATTTAATTTTTATATA
1 ATTTAATTTTTATATA
7185476 ATTTAATTTTTATATA
1 ATTTAATTTTTATATA
7185492 A
1 A
7185493 AACTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTAATTTTTATATA
Found at i:7187900 original size:19 final size:20
Alignment explanation
Indices: 7187878--7187916 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7187868 CTTAAAAATC
7187878 AAAAC-AAAAAATAAATTAA
1 AAAACTAAAAAATAAATTAA
7187897 AAAACTAAAAAATAAATTAA
1 AAAACTAAAAAATAAATTAA
7187917 TATATTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAACTAAAAAATAAATTAA
Found at i:7193680 original size:21 final size:20
Alignment explanation
Indices: 7193654--7193696 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
7193644 TTCTCATTCA
7193654 TCAAATCATCAAATTT-CTTTT
1 TCAAATCA--AAATTTCCTTTT
7193675 TCAAATCAAAATTTCCTTTT
1 TCAAATCAAAATTTCCTTTT
7193695 TC
1 TC
7193697 TAAAAATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 7 0.33
21 8 0.38
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.47
Consensus pattern (20 bp):
TCAAATCAAAATTTCCTTTT
Found at i:7196043 original size:17 final size:18
Alignment explanation
Indices: 7196021--7196065 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
7196011 AAAAATTGTT
7196021 AAATT-AAAGATTGAAAA
1 AAATTAAAAGATTGAAAA
*
7196038 AAATTAAAAAGATTGAAAT
1 AAATT-AAAAGATTGAAAA
*
7196057 AGATTAAAA
1 AAATTAAAA
7196066 ATTTAAGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 5 0.21
18 4 0.17
19 15 0.62
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.24
Consensus pattern (18 bp):
AAATTAAAAGATTGAAAA
Found at i:7196050 original size:19 final size:19
Alignment explanation
Indices: 7196026--7196066 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7196016 TTGTTAAATT
7196026 AAAGATTGAAAAAAATTAA
1 AAAGATTGAAAAAAATTAA
* *
7196045 AAAGATTGAAATAGATTAA
1 AAAGATTGAAAAAAATTAA
7196064 AAA
1 AAA
7196067 TTTAAGATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (19 bp):
AAAGATTGAAAAAAATTAA
Found at i:7196060 original size:10 final size:10
Alignment explanation
Indices: 7196026--7196066 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
7196016 TTGTTAAATT
7196026 AAAGATTGAA
1 AAAGATTGAA
*
7196036 AAAAATT-AA
1 AAAGATTGAA
7196045 AAAGATTGAA
1 AAAGATTGAA
*
7196055 ATAGATT-AA
1 AAAGATTGAA
7196064 AAA
1 AAA
7196067 TTTAAGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 12 0.46
10 14 0.54
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (10 bp):
AAAGATTGAA
Found at i:7200191 original size:21 final size:21
Alignment explanation
Indices: 7200167--7200213 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
7200157 GGCACCTTAG
7200167 ATCATCTGAAGAAGATTTTGA
1 ATCATCTGAAGAAGATTTTGA
7200188 ATCATCTGAAGAAGATTTTGA
1 ATCATCTGAAGAAGATTTTGA
7200209 ATCAT
1 ATCAT
7200214 TATAAAGTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (21 bp):
ATCATCTGAAGAAGATTTTGA
Found at i:7201066 original size:41 final size:41
Alignment explanation
Indices: 7201014--7201095 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
7201004 CTAGAAGTAT
7201014 GATAAAATTTAATTGATAAGCCGATTCGATATCGAGTAGAA
1 GATAAAATTTAATTGATAAGCCGATTCGATATCGAGTAGAA
*
7201055 GATAAAATTTAATTGATAAGCTGATTCGATATCGAGTAGAA
1 GATAAAATTTAATTGATAAGCCGATTCGATATCGAGTAGAA
7201096 TATGTCACAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (41 bp):
GATAAAATTTAATTGATAAGCCGATTCGATATCGAGTAGAA
Found at i:7203594 original size:30 final size:30
Alignment explanation
Indices: 7203534--7203707 Score: 131
Period size: 30 Copynumber: 5.9 Consensus size: 30
7203524 CGTTTTCTTT
* *
7203534 AAACCCTAAAATCAAAACCATAAA-CCTCC
1 AAACCCTAAAATTAAAACCCTAAACCCTCC
*
7203563 AAACCCTAAAATTGAAACCCTAAACCCTCC
1 AAACCCTAAAATTAAAACCCTAAACCCTCC
* * * * *
7203593 AAACCTTAAAATCAAAGCTCTAAACCCTCA
1 AAACCCTAAAATTAAAACCCTAAACCCTCC
* * * * **
7203623 AAATCATAAAACTAAAA-CTTAAACCCTTT
1 AAACCCTAAAATTAAAACCCTAAACCCTCC
** * *
7203652 AAATTCTAAAATAAAAACTCTAAACCCT--
1 AAACCCTAAAATTAAAACCCTAAACCCTCC
* * *
7203680 AAATCTTAAAATTGAAACCCTAAACCCT
1 AAACCCTAAAATTAAAACCCTAAACCCT
7203708 TTAAGCCTTA
Statistics
Matches: 114, Mismatches: 29, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
28 23 0.20
29 42 0.37
30 49 0.43
ACGTcount: A:0.49, C:0.28, G:0.02, T:0.21
Consensus pattern (30 bp):
AAACCCTAAAATTAAAACCCTAAACCCTCC
Found at i:7203682 original size:28 final size:27
Alignment explanation
Indices: 7203599--7203707 Score: 87
Period size: 28 Copynumber: 3.8 Consensus size: 27
7203589 CTCCAAACCT
*
7203599 TAAAATCAAAGCTCTAAACCCTCAAAATCA
1 TAAAAT-AAAACTCTAAACCCT--AAATCA
7203629 TAAAACTAAAACT-TAAACCCTTTAAATTC-
1 TAAAA-TAAAACTCTAAACCC--TAAA-TCA
*
7203658 TAAAATAAAAACTCTAAACCCTAAATCT
1 TAAAAT-AAAACTCTAAACCCTAAATCA
* *
7203686 TAAAATTGAAACCCTAAACCCT
1 TAAAA-TAAAACTCTAAACCCT
7203708 TTAAGCCTTA
Statistics
Matches: 68, Mismatches: 3, Indels: 18
0.76 0.03 0.20
Matches are distributed among these distances:
27 2 0.03
28 23 0.34
29 22 0.32
30 19 0.28
31 2 0.03
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.25
Consensus pattern (27 bp):
TAAAATAAAACTCTAAACCCTAAATCA
Found at i:7203733 original size:22 final size:22
Alignment explanation
Indices: 7203705--7203755 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
7203695 AACCCTAAAC
7203705 CCTTTAAGCCTTAGAATCAAAA
1 CCTTTAAGCCTTAGAATCAAAA
7203727 CCTTTAAGCCTTAGAATCAAAA
1 CCTTTAAGCCTTAGAATCAAAA
7203749 CCTTTAA
1 CCTTTAA
7203756 ACTTTCTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (22 bp):
CCTTTAAGCCTTAGAATCAAAA
Found at i:7205661 original size:9 final size:9
Alignment explanation
Indices: 7205647--7205671 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7205637 ATTGACAAGA
7205647 AAAAAAAGC
1 AAAAAAAGC
7205656 AAAAAAAGC
1 AAAAAAAGC
7205665 AAAAAAA
1 AAAAAAA
7205672 AAGTTCTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.84, C:0.08, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAGC
Found at i:7206941 original size:9 final size:9
Alignment explanation
Indices: 7206927--7206953 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7206917 CATTTCATTA
7206927 AGAATTGTG
1 AGAATTGTG
7206936 AGAATTGTG
1 AGAATTGTG
7206945 AGAATTGTG
1 AGAATTGTG
7206954 GTGGAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (9 bp):
AGAATTGTG
Found at i:7209834 original size:15 final size:15
Alignment explanation
Indices: 7209814--7209847 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7209804 GGGGACATAT
7209814 AAAAAAAAGCA-AAAA
1 AAAAAAAAG-AGAAAA
7209829 AAAAAAAAGAGAAAA
1 AAAAAAAAGAGAAAA
7209844 AAAA
1 AAAA
7209848 TGATTATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.06
15 17 0.94
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAGAAAA
Found at i:7211362 original size:23 final size:22
Alignment explanation
Indices: 7211312--7211417 Score: 115
Period size: 23 Copynumber: 4.7 Consensus size: 22
7211302 GCTGGCATGC
7211312 AAGCCCAGATTAGCTAGCACAT
1 AAGCCCAGATTAGCTAGCACAT
* * *
7211334 AAGCCCAAATTAGTTGGCACAAT
1 AAGCCCAGATTAGCTAGCAC-AT
*
7211357 AAGCCCA-ATTTAGCTAGCATAAT
1 AAGCCCAGA-TTAGCTAGCA-CAT
* *
7211380 AAGCCCAGATTAGTTGGCACAT
1 AAGCCCAGATTAGCTAGCACAT
*
7211402 AAACCCAGATTAGCTA
1 AAGCCCAGATTAGCTA
7211418 AAAAAGTATA
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
22 33 0.49
23 34 0.50
24 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (22 bp):
AAGCCCAGATTAGCTAGCACAT
Found at i:7211370 original size:45 final size:45
Alignment explanation
Indices: 7211312--7211417 Score: 153
Period size: 45 Copynumber: 2.4 Consensus size: 45
7211302 GCTGGCATGC
*
7211312 AAGCCCAGATTAGCTAGCA-CATAAGCCCAAATTAGTTGGCACAAT
1 AAGCCCAGATTAGCTAGCATAATAAGCCCAAATTAGTTGGCAC-AT
*
7211357 AAGCCCA-ATTTAGCTAGCATAATAAGCCCAGATTAGTTGGCACAT
1 AAGCCCAGA-TTAGCTAGCATAATAAGCCCAAATTAGTTGGCACAT
*
7211402 AAACCCAGATTAGCTA
1 AAGCCCAGATTAGCTA
7211418 AAAAAGTATA
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
44 1 0.02
45 32 0.58
46 22 0.40
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.22
Consensus pattern (45 bp):
AAGCCCAGATTAGCTAGCATAATAAGCCCAAATTAGTTGGCACAT
Found at i:7211688 original size:32 final size:32
Alignment explanation
Indices: 7211651--7211848 Score: 120
Period size: 32 Copynumber: 6.2 Consensus size: 32
7211641 TTCTTAAGTT
*
7211651 CAGTTTAGCTAGCCCTCAATAAAATTTAAGCC
1 CAGTTTAGCTAGCACTCAATAAAATTTAAGCC
* * **
7211683 TAGTTTATCTAGCAC-C-ATGAAGTTTTAAGCC
1 CAGTTTAGCTAGCACTCAAT-AAAATTTAAGCC
* * *
7211714 CAGATTAGCTGGCA--CAAAAAAATTCTTAAGCC
1 CAGTTTAGCTAGCACTCAATAAAA-T-TTAAGCC
* * * * *
7211746 CAGTTTATCAAGCACTCAATGAGATTTAATCC
1 CAGTTTAGCTAGCACTCAATAAAATTTAAGCC
* * *
7211778 CAGTTTATCTGGCAC-CAA-AGAAAGATTAAGCC
1 CAGTTTAGCTAGCACTCAATA-AAA-TTTAAGCC
* * * *
7211810 TAGTTTAGCTGGCCCTTAATAAAATTTAAGCC
1 CAGTTTAGCTAGCACTCAATAAAATTTAAGCC
*
7211842 TAGTTTA
1 CAGTTTA
7211849 TCTGGCATCG
Statistics
Matches: 125, Mismatches: 31, Indels: 20
0.71 0.18 0.11
Matches are distributed among these distances:
30 5 0.04
31 28 0.22
32 80 0.64
33 6 0.05
34 6 0.05
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (32 bp):
CAGTTTAGCTAGCACTCAATAAAATTTAAGCC
Found at i:7211713 original size:31 final size:32
Alignment explanation
Indices: 7211675--7211875 Score: 128
Period size: 32 Copynumber: 6.3 Consensus size: 32
7211665 CTCAATAAAA
*
7211675 TTTAAGCCTAGTTTATCTAGCACC-ATGAAGT
1 TTTAAGCCTAGTTTATCTGGCACCAATGAAGT
* * * ** *
7211706 TTTAAGCCCAGATTAGCTGGCA-CAAAAAAAT
1 TTTAAGCCTAGTTTATCTGGCACCAATGAAGT
* ** *
7211737 TCTTAAGCCCAGTTTATCAAGCACTCAATG-AGA
1 T-TTAAGCCTAGTTTATCTGGCAC-CAATGAAGT
* * *
7211770 TTTAATCCCAGTTTATCTGGCACCAAAGAAAG-
1 TTTAAGCCTAGTTTATCTGGCACCAATG-AAGT
* * **
7211802 ATTAAGCCTAGTTTAGCTGGC-CCTTAAT-AAAA
1 TTTAAGCCTAGTTTATCTGGCACC--AATGAAGT
* *
7211834 TTTAAGCCTAGTTTATCTGGCATC-GTGAAGT
1 TTTAAGCCTAGTTTATCTGGCACCAATGAAGT
7211865 TTTAAGCCTAG
1 TTTAAGCCTAG
7211876 ATTAGTTGGC
Statistics
Matches: 128, Mismatches: 31, Indels: 22
0.71 0.17 0.12
Matches are distributed among these distances:
30 2 0.02
31 44 0.34
32 72 0.56
33 7 0.05
34 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (32 bp):
TTTAAGCCTAGTTTATCTGGCACCAATGAAGT
Found at i:7211743 original size:63 final size:64
Alignment explanation
Indices: 7211676--7211816 Score: 162
Period size: 64 Copynumber: 2.2 Consensus size: 64
7211666 TCAATAAAAT
* * *
7211676 TTAAGCCTAGTTTATCTAGCAC-C-ATGAAGTTTTAAGCCCAGATTAGCTGGCA-CAAAAAAATT
1 TTAAGCCTAGTTTATCAAGCACTCAATG-AGATTTAAGCCCAGATTAGCTGGCACCAAAAAAA-G
*
7211738 C
64 A
* * * * *
7211739 TTAAGCCCAGTTTATCAAGCACTCAATGAGATTTAATCCCAGTTTATCTGGCACCAAAGAAAGA
1 TTAAGCCTAGTTTATCAAGCACTCAATGAGATTTAAGCCCAGATTAGCTGGCACCAAAAAAAGA
7211803 TTAAGCCTAGTTTA
1 TTAAGCCTAGTTTA
7211817 GCTGGCCCTT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
63 20 0.31
64 35 0.54
65 10 0.15
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (64 bp):
TTAAGCCTAGTTTATCAAGCACTCAATGAGATTTAAGCCCAGATTAGCTGGCACCAAAAAAAGA
Found at i:7211764 original size:95 final size:94
Alignment explanation
Indices: 7211577--7211794 Score: 260
Period size: 95 Copynumber: 2.3 Consensus size: 94
7211567 AAATTTGCAA
* * *
7211577 AAAATTTAAGCCCAATTTAGT-T-GACACCATAAAGTTTTAAGCTCGATTAGCTGGCATAAAAAA
1 AAAATTTAAGCCCAGTTTA-TCTAG-CACCATAAAGTTTTAAGCCCGATTAGCTGGCACAAAAAA
* ** * *
7211640 TTTCTTAAGTTCAGTTTAGCTAGCCCTCAAT
64 ATTCTTAAGCCCAGTTTAGCAAGCACTCAAT
* *
7211671 AAAATTTAAGCCTAGTTTATCTAGCACCATGAAGTTTTAAGCCCAGATTAGCTGGCACAAAAAAA
1 AAAATTTAAGCCCAGTTTATCTAGCACCATAAAGTTTTAAGCCC-GATTAGCTGGCACAAAAAAA
*
7211736 TTCTTAAGCCCAGTTTATCAAGCACTCAAT
65 TTCTTAAGCCCAGTTTAGCAAGCACTCAAT
* * * *
7211766 GAGATTTAATCCCAGTTTATCTGGCACCA
1 AAAATTTAAGCCCAGTTTATCTAGCACCA
7211795 AAGAAAGATT
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
93 1 0.01
94 36 0.34
95 68 0.65
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (94 bp):
AAAATTTAAGCCCAGTTTATCTAGCACCATAAAGTTTTAAGCCCGATTAGCTGGCACAAAAAAAT
TCTTAAGCCCAGTTTAGCAAGCACTCAAT
Found at i:7211825 original size:159 final size:159
Alignment explanation
Indices: 7211652--7211981 Score: 475
Period size: 159 Copynumber: 2.1 Consensus size: 159
7211642 TCTTAAGTTC
7211652 AGTTTAGCTAGCCCTCAATAAAATTTAAGCCTAGTTTATCTAGCACCATGAAGTTTTAAGCCCAG
1 AGTTTAGCTAGCCCTCAATAAAATTTAAGCCTAGTTTATCTAGCACCATGAAGTTTTAAGCCCAG
*
7211717 ATTAGCTGGCACAAAAAAATTCTTAAGCCCAGTTTATCAAGCACTCAATGAGATTTAATCCCAGT
66 ATTAGCTGGCACAAAAAAATTCTTAAG-CCAGTTTAGCAAGCACTCAATGAGATTTAATCCCAGT
7211782 TTATCTGGCAC-CAAAGAAAGA-TTAAGCCT
130 TTATCTGGC-CTCAAAGAAAGATTTAAGCCT
* * * * * *
7211811 AGTTTAGCTGGCCCTTAATAAAATTTAAGCCTAGTTTATCTGGCATCGTGAAGTTTTAAGCCTAG
1 AGTTTAGCTAGCCCTCAATAAAATTTAAGCCTAGTTTATCTAGCACCATGAAGTTTTAAGCCCAG
* * * ** * *
7211876 ATTAGTTGGCACAAAAATATTCTTAAGCCATTTTAGCTGGCCCTCAATGAGATTTAATTCCAGTT
66 ATTAGCTGGCACAAAAAAATTCTTAAGCCAGTTTAGCAAGCACTCAATGAGATTTAATCCCAGTT
* *
7211941 TATTTGGCCTTCAAAGAAAGATTTAAGCTT
131 TATCTGGCC-TCAAAGAAAGATTTAAGCCT
7211971 AGTTTAGCTAG
1 AGTTTAGCTAG
7211982 TACCCATTTT
Statistics
Matches: 151, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
157 1 0.01
158 39 0.26
159 94 0.62
160 17 0.11
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (159 bp):
AGTTTAGCTAGCCCTCAATAAAATTTAAGCCTAGTTTATCTAGCACCATGAAGTTTTAAGCCCAG
ATTAGCTGGCACAAAAAAATTCTTAAGCCAGTTTAGCAAGCACTCAATGAGATTTAATCCCAGTT
TATCTGGCCTCAAAGAAAGATTTAAGCCT
Found at i:7212251 original size:36 final size:36
Alignment explanation
Indices: 7212166--7212360 Score: 117
Period size: 36 Copynumber: 5.4 Consensus size: 36
7212156 TTAATGATCA
* * **
7212166 CTTTATTCAACTTACGATGTTGTCCCGATCGATTCTT
1 CTTTATTCAACTTACAATGTTATCCTAATC-ATTCTT
* *
7212203 CATCTTA-T-GACTTGCAATGTTATCCTAATCATTCTT
1 C-T-TTATTCAACTTACAATGTTATCCTAATCATTCTT
* ** * ** *
7212239 CTTTATTCGACTTACGGTGTTGTCCTGGTTGATTCTT
1 CTTTATTCAACTTACAATGTTATCCT-AATCATTCTT
* * * ** *
7212276 CTTTA-TCTAACTTACAGTGTTGTCTTGGTCATCCTT
1 CTTTATTC-AACTTACAATGTTATCCTAATCATTCTT
* * * *
7212312 TTTTATCCAACTTACAATGTTATCCCAATCGTTCTT
1 CTTTATTCAACTTACAATGTTATCCTAATCATTCTT
7212348 CTTTATTCAACTT
1 CTTTATTCAACTT
7212361 GCGATGTTGT
Statistics
Matches: 120, Mismatches: 31, Indels: 15
0.72 0.19 0.09
Matches are distributed among these distances:
34 3 0.03
35 2 0.02
36 65 0.54
37 45 0.38
38 2 0.02
39 3 0.03
ACGTcount: A:0.19, C:0.23, G:0.12, T:0.46
Consensus pattern (36 bp):
CTTTATTCAACTTACAATGTTATCCTAATCATTCTT
Found at i:7212275 original size:37 final size:37
Alignment explanation
Indices: 7212233--7212332 Score: 105
Period size: 37 Copynumber: 2.7 Consensus size: 37
7212223 TATCCTAATC
* *
7212233 ATTCTTCTTTAT-TCGACTTACGGTGTTGTCCTGGTTG
1 ATTCTTCTTTATCT-AACTTACAGTGTTGTCCTGGTTG
* *
7212270 ATTCTTCTTTATCTAACTTACAGTGTTGTCTTGG-TC
1 ATTCTTCTTTATCTAACTTACAGTGTTGTCCTGGTTG
* * * *
7212306 ATCCTTTTTTATCCAACTTACAATGTT
1 ATTCTTCTTTATCTAACTTACAGTGTT
7212333 ATCCCAATCG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 24 0.44
37 29 0.54
38 1 0.02
ACGTcount: A:0.17, C:0.20, G:0.14, T:0.49
Consensus pattern (37 bp):
ATTCTTCTTTATCTAACTTACAGTGTTGTCCTGGTTG
Done.