Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 39 of 105
Found at i:7421099 original size:43 final size:42
Alignment explanation
Indices: 7421012--7421100 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 42
7421002 AGAGTTTCTA
* * *
7421012 TTTTAAGAAAAATTGATACTTTAACTTTTCCTAAAAATATTT
1 TTTTAAGAAAAATTAATACTTCAACTTTTCCTAAAAATAGTT
*
7421054 TTTTAAGGAAAAATTAATACTTCCAGCTTTTCC-ACAAAAT-GTT
1 TTTTAA-GAAAAATTAATACTT-CAACTTTTCCTA-AAAATAGTT
7421097 TTTT
1 TTTT
7421101 CTGAAACTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
42 6 0.15
43 21 0.52
44 13 0.32
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (42 bp):
TTTTAAGAAAAATTAATACTTCAACTTTTCCTAAAAATAGTT
Found at i:7421099 original size:44 final size:42
Alignment explanation
Indices: 7421012--7421100 Score: 108
Period size: 44 Copynumber: 2.1 Consensus size: 42
7421002 AGAGTTTCTA
* *
7421012 TTTTAAGAAAAATTGATACTTTAACTTTTCCTAAAAATATTT
1 TTTTAAGAAAAATTAATACTTCAACTTTTCCTAAAAATATTT
* *
7421054 TTTTAAGGAAAAATTAATACTTCCAGCTTTTCC-ACAAAATGTTT
1 TTTTAA-GAAAAATTAATACTT-CAACTTTTCCTA-AAAATATTT
7421098 TTT
1 TTT
7421101 CTGAAACTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
42 6 0.15
43 15 0.38
44 19 0.47
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (42 bp):
TTTTAAGAAAAATTAATACTTCAACTTTTCCTAAAAATATTT
Found at i:7421324 original size:60 final size:58
Alignment explanation
Indices: 7421119--7421353 Score: 208
Period size: 60 Copynumber: 3.9 Consensus size: 58
7421109 TTAATTCGAA
* * ** * ** *
7421119 AAAAATTGATACTTTCAAACTTTTCCCAAAAACATTCTTTT-TTAAATTCTAATTCTAAG
1 AAAAATTGATACTTTCAACCTTTT-CCAAAAATATT-TTTTAGAAAATTATTTTTCAAAG
*
7421178 -AAAATTGATTACTTT-TACCTTTTCTTCAAAAATATTTTTTAAGAAAATTAATTTTTCAAAG
1 AAAAATTGA-TACTTTCAACCTTTTC--CAAAAATATTTTTT-AGAAAATT-ATTTTTCAAAG
* *
7421239 GAAAATTCGATACTTTCAACTTTTTCGCGAAAAATATTTTTTAGAAAACTTATTTTTC-AAG
1 AAAAATT-GATACTTTCAACCTTTTC-C-AAAAATATTTTTTAGAAAA-TTATTTTTCAAAG
**
7421300 AAAAATTGATACTTTCAACCTTTTCCATCAAAATATTTTTTAGAATTTTATTTT
1 AAAAATTGATACTTTCAACCTTTTCCA--AAAATATTTTTTAGAAAATTATTTT
7421354 AAGAAAATCA
Statistics
Matches: 147, Mismatches: 16, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
57 1 0.01
58 19 0.13
59 23 0.16
60 38 0.26
61 16 0.11
62 26 0.18
63 24 0.16
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (58 bp):
AAAAATTGATACTTTCAACCTTTTCCAAAAATATTTTTTAGAAAATTATTTTTCAAAG
Found at i:7421388 original size:17 final size:17
Alignment explanation
Indices: 7421366--7421400 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7421356 GAAAATCATT
7421366 AAATAAAATAAAA-TAAA
1 AAATAAAA-AAAATTAAA
7421383 AAATAAAAAAAATTAAA
1 AAATAAAAAAAATTAAA
7421400 A
1 A
7421401 GGAATACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
AAATAAAAAAAATTAAA
Found at i:7423957 original size:16 final size:16
Alignment explanation
Indices: 7423938--7423969 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7423928 TCAATCTTTA
7423938 AAATCATCATCATCAT
1 AAATCATCATCATCAT
*
7423954 AAATCATCATTATCAT
1 AAATCATCATCATCAT
7423970 TAGTTTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATCATCATCATCAT
Found at i:7425644 original size:3 final size:3
Alignment explanation
Indices: 7425638--7425701 Score: 69
Period size: 3 Copynumber: 21.0 Consensus size: 3
7425628 TTTTTCCTAT
* *
7425638 TTA TTA TTA TTA TTA TT- TTCT TTA TTA TTA -TA TTTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA -TTA TTA TTA TTA
7425683 TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA -TTA TTA
7425702 GATTAGAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
2 4 0.08
3 42 0.79
4 7 0.13
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7425914 original size:56 final size:56
Alignment explanation
Indices: 7425770--7426071 Score: 289
Period size: 57 Copynumber: 5.4 Consensus size: 56
7425760 TTTTTTAATG
*
7425770 ATTTTCTT-AAAATAAAATTCTAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTCTTGAAAATAATATTCT-AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* ** *
7425826 ATTTTTCTTGAAAATAAGTTTTCTAAAAAATATTTTACA-AAAAAGTTGAAAGTATCA
1 A-TTTTCTTGAAAATAA-TATTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * *
7425883 ATTTTCCTTGAAAATAATTTTCTAAAAAATATTTTTGAGGAAAAGGTAAAAGTATCA
1 ATTTT-CTTGAAAATAATATTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * * *
7425940 ATTTTTTTAAAAAATAA-ATT-AAAAAAATGTTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTCTT-GAAAATAATATTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * * *
7425995 ATTTTCTTTGAAATTAA-AGTT-TCAGAAAAACA-TTTTGGGGAAAAGTT-AGAAGTACCA
1 ATTTTC-TTGAAAATAATA-TTCT-A-AAAAATATTTTTGAGGAAAAGTTGA-AAGTATCA
*
7426052 ATTTTCCTT-AAAAAAATATT
1 ATTTT-CTTGAAAATAATATT
7426072 TTAAGGAAAA
Statistics
Matches: 206, Mismatches: 27, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
55 43 0.21
56 40 0.19
57 93 0.45
58 26 0.13
59 4 0.02
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (56 bp):
ATTTTCTTGAAAATAATATTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:7431912 original size:121 final size:121
Alignment explanation
Indices: 7431698--7431928 Score: 311
Period size: 121 Copynumber: 1.9 Consensus size: 121
7431688 ATGTTGTTGG
* * * * * *
7431698 TGAATTTAAACTAATTGACAATTTATATAAACTATGCTTAGCCTGTAATGATTAATATAGTTGCA
1 TGAATTTAAACTAATTCACAATTTATACAAACCATGCTTAGCATATAATAATTAATATAGTTGCA
* * * *
7431763 ATAATGTTGAAAAAATAGTGACTAAAAAATCTTTGACTAAAGAAATTCATTATTGA
66 ATAATGTGGAAAAAACAGTGACTAAAAAATCTCTAACTAAAGAAATTCATTATTGA
* * *
7431819 TGAATTTAAACTAATTCACAATTTATACAAACCGTGCTTGGCATATGATAATTAATATAGTTGCA
1 TGAATTTAAACTAATTCACAATTTATACAAACCATGCTTAGCATATAATAATTAATATAGTTGCA
* *
7431884 ATAATGTGGAAAAGACAGT-ATCTTAAAAATCTCTAACTAAAGAAA
66 ATAATGTGGAAAAAACAGTGA-CTAAAAAATCTCTAACTAAAGAAA
7431929 AGTCTTTTTT
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
120 1 0.01
121 93 0.99
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (121 bp):
TGAATTTAAACTAATTCACAATTTATACAAACCATGCTTAGCATATAATAATTAATATAGTTGCA
ATAATGTGGAAAAAACAGTGACTAAAAAATCTCTAACTAAAGAAATTCATTATTGA
Found at i:7437121 original size:20 final size:20
Alignment explanation
Indices: 7437093--7437145 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
7437083 TTTGTTTTTA
*
7437093 AAATAATTTTTTAAAATGCTT
1 AAAT-ATTTTTTAAAATACTT
* *
7437114 AAATATTTTTAAAAATATTT
1 AAATATTTTTTAAAATACTT
*
7437134 AAATGTTTTTTA
1 AAATATTTTTTA
7437146 GAATTTTCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
AAATATTTTTTAAAATACTT
Found at i:7438938 original size:2 final size:2
Alignment explanation
Indices: 7438931--7438962 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7438921 CGAGTATAAG
7438931 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7438963 TGGGGTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7442243 original size:16 final size:16
Alignment explanation
Indices: 7442224--7442255 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7442214 TCAATCTTTA
7442224 AAATCATCATCATCAT
1 AAATCATCATCATCAT
*
7442240 AAATCATCATTATCAT
1 AAATCATCATCATCAT
7442256 TAGTTTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATCATCATCATCAT
Found at i:7443240 original size:183 final size:180
Alignment explanation
Indices: 7442926--7443253 Score: 467
Period size: 183 Copynumber: 1.8 Consensus size: 180
7442916 TTTTTAACCA
** * *
7442926 TATATGGCCCACCTTGTAATTTCTTATAGATTAATTGTAATAACTTTTGCAATCTATTCATTGCT
1 TATATGGCCCACCTCATAATTTATTATAGATTAATTGTAATAACTTTTGCAATCCATTCATTGCT
* * * * ** * * *
7442991 GCCATCAGATAGTATGTATATCTTCTAATAAAAATTATATATTTATTCATAAAAGACTCTAAATT
66 ACCACCACAAAACATGTATATATTCTAATAAAAATGATATATTTATTCATAAAAGACTCCAAATT
7443056 CAATTCAGCTTGTTTAATCAAAAAGTAGACTAAAAAAAGCTTTTCAAACG
131 CAATTCAGCTTGTTTAATCAAAAAGTAGACTAAAAAAAGCTTTTCAAACG
* *
7443106 TATATGGCCCACCTCATAATTTATTGTAGATTAATTGTAATAATTTTTGCAATCCATGTCATATG
1 TATATGGCCCACCTCATAATTTATTATAGATTAATTGTAATAACTTTTGCAATCCAT-TCAT-TG
* * *
7443171 CTACTACCAACAAAACATGTATATATTCTAATCAAAATGATATATTTATTCGTAAAAGACTCCAA
64 CTACCACC-ACAAAACATGTATATATTCTAATAAAAATGATATATTTATTCATAAAAGACTCCAA
7443236 ATTCAATTCAGCTTGTTT
128 ATTCAATTCAGCTTGTTT
7443254 CATTGGAATG
Statistics
Matches: 127, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
180 51 0.40
181 4 0.03
182 7 0.06
183 65 0.51
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (180 bp):
TATATGGCCCACCTCATAATTTATTATAGATTAATTGTAATAACTTTTGCAATCCATTCATTGCT
ACCACCACAAAACATGTATATATTCTAATAAAAATGATATATTTATTCATAAAAGACTCCAAATT
CAATTCAGCTTGTTTAATCAAAAAGTAGACTAAAAAAAGCTTTTCAAACG
Found at i:7460442 original size:122 final size:122
Alignment explanation
Indices: 7460225--7460445 Score: 354
Period size: 122 Copynumber: 1.8 Consensus size: 122
7460215 ATGTTGTTGG
7460225 TGAATTTAAACTAATTGACAATTTATACAAACTGTGCTTAGCCTATAATAATTAATATAGTTGCA
1 TGAATTTAAACTAATTGACAATTTATACAAACTGTGCTTAGCCTATAATAATTAATATAGTTGCA
* * *
7460290 ATAATGTTGAAAAGATAGTGACTAAAAAATCTTTGAGTAAAGAAAATTCATTATTGA
66 ATAATGTGGAAAAGACAATGACTAAAAAATCTTTGAGTAAAGAAAATTCATTATTGA
* * *
7460347 TGAATTTAAACTAATTGACAATTTATATAAA-TCGTGCTTGGCCTATGATAATTAATATAGTTGC
1 TGAATTTAAACTAATTGACAATTTATACAAACT-GTGCTTAGCCTATAATAATTAATATAGTTGC
* *
7460411 AATAATGTGGAAAAGACAATGTCTTAAAAATCTTT
65 AATAATGTGGAAAAGACAATGACTAAAAAATCTTT
7460446 AACTATAGAA
Statistics
Matches: 90, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
121 1 0.01
122 89 0.99
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.35
Consensus pattern (122 bp):
TGAATTTAAACTAATTGACAATTTATACAAACTGTGCTTAGCCTATAATAATTAATATAGTTGCA
ATAATGTGGAAAAGACAATGACTAAAAAATCTTTGAGTAAAGAAAATTCATTATTGA
Found at i:7464746 original size:2 final size:2
Alignment explanation
Indices: 7464739--7464772 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7464729 CTAAAACCCA
*
7464739 AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7464773 CTTATACTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7467084 original size:16 final size:16
Alignment explanation
Indices: 7467050--7467087 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
7467040 TTTTGAAAAT
7467050 ATTTTATAAAATTTTAG
1 ATTTTATAAAA-TTTAG
7467067 ATTTTAATAAAA-TTAG
1 ATTTT-ATAAAATTTAG
7467083 ATTTT
1 ATTTT
7467088 TTTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 9 0.45
17 5 0.25
18 6 0.30
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (16 bp):
ATTTTATAAAATTTAG
Found at i:7471038 original size:16 final size:16
Alignment explanation
Indices: 7471019--7471050 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7471009 TCAATCTTTA
7471019 AAATCATCATCATCAT
1 AAATCATCATCATCAT
*
7471035 AAATCATCATTATCAT
1 AAATCATCATCATCAT
7471051 TAGTTTATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATCATCATCATCAT
Found at i:7472089 original size:176 final size:176
Alignment explanation
Indices: 7471764--7472112 Score: 459
Period size: 176 Copynumber: 2.0 Consensus size: 176
7471754 GCCCACCTCA
* * *
7471764 TAATTTCTTCTAGATTAATTGTAATAACTTTTGCAATCCATGTCATATGCTACTATCAGATAGTA
1 TAATTTCTTCTAGATTAATTGTAATAACTTTTGCAATCCATGTCATATGCTACTACCAAATAGCA
* * * *** *
7471829 TGTATATTTTCAAATAAAAATTATATATTTATTCATAAAAGACTCCATATTCATTTGTGCTTGTT
66 TGTATATATTCAAATAAAAATTATATATTTATTCATAAAAGACTCCAAATTCAATTCCACTTATT
7471894 TCATCGAAAATTAGACTCAAAAACCTTTTCAAACATATATGGCCCG
131 TCATCGAAAATTAGACTCAAAAACCTTTTCAAACATATATGGCCCG
* * ** *
7471940 TAATTTCTTGTAGATTAATTGTAATAATTTTTGCAATCCATGTCATATTTTGC-AGCCAAATAGC
1 TAATTTCTTCTAGATTAATTGTAATAACTTTTGCAATCCATGTCATATGCTACTA-CCAAATAGC
* * *
7472004 ATTTATATATTCTAATCAAAATTATATATTTATTCATAAAAGACTCCAAATTCAATTCCACTTAT
65 ATGTATATATTCAAATAAAAATTATATATTTATTCATAAAAGACTCCAAATTCAATTCCACTTAT
* * * * *
7472069 TTCATTG-GAATGTGGACTCAATAACCTTTTCAAACATGTATGGC
130 TTCATCGAAAAT-TAGACTCAAAAACCTTTTCAAACATATATGGC
7472113 TTTGTTCTTT
Statistics
Matches: 148, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
175 4 0.03
176 144 0.97
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.40
Consensus pattern (176 bp):
TAATTTCTTCTAGATTAATTGTAATAACTTTTGCAATCCATGTCATATGCTACTACCAAATAGCA
TGTATATATTCAAATAAAAATTATATATTTATTCATAAAAGACTCCAAATTCAATTCCACTTATT
TCATCGAAAATTAGACTCAAAAACCTTTTCAAACATATATGGCCCG
Found at i:7473108 original size:30 final size:30
Alignment explanation
Indices: 7473068--7473156 Score: 151
Period size: 30 Copynumber: 3.0 Consensus size: 30
7473058 TTGGTGTTTC
*
7473068 CAATGGCTATTTTCTTCTCCCAAACACTTG
1 CAATGACTATTTTCTTCTCCCAAACACTTG
*
7473098 CAATGACTATTTTCTTCTCCCAAACACTTT
1 CAATGACTATTTTCTTCTCCCAAACACTTG
*
7473128 CAATGACTATTTTCTTCTCTCAAACACTT
1 CAATGACTATTTTCTTCTCCCAAACACTT
7473157 CTAACGGCTA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.39
Consensus pattern (30 bp):
CAATGACTATTTTCTTCTCCCAAACACTTG
Found at i:7478155 original size:38 final size:38
Alignment explanation
Indices: 7478104--7478218 Score: 196
Period size: 38 Copynumber: 3.0 Consensus size: 38
7478094 TTAAGTTGTG
7478104 TTGGATTAGGATGCATAAATTGAGGGAGAGTTTTGCCA
1 TTGGATTAGGATGCATAAATTGAGGGAGAGTTTTGCCA
7478142 TTGGATTAGGATGCATAAATTGAGGGAGAGTTTTGCCA
1 TTGGATTAGGATGCATAAATTGAGGGAGAGTTTTGCCA
* *
7478180 TTGGATTAGGATGCATAAATTAATGGG-GAGTTTTACCA
1 TTGGATTAGGATGCATAAATTGA-GGGAGAGTTTTGCCA
7478218 T
1 T
7478219 GCATTGCTTA
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
38 71 0.96
39 3 0.04
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (38 bp):
TTGGATTAGGATGCATAAATTGAGGGAGAGTTTTGCCA
Found at i:7484683 original size:122 final size:122
Alignment explanation
Indices: 7484543--7484783 Score: 394
Period size: 122 Copynumber: 2.0 Consensus size: 122
7484533 AAATTTAAAT
*
7484543 GTTGTTGGTGAATTTAAACTAATTGACAATTTATATAAA-CTGTGCTTAGCCTACAATAATTAAT
1 GTTGTTGATGAATTTAAACTAATTGACAATTTATATAAATC-GTGCTTAGCCTACAATAATTAAT
* *
7484607 ATAGTTGCAATAATGTTGAAAAGATAGTGACTAAAAAATCTTTAAGTAAAGAAAATTC
65 ATAGTTGCAATAATGTGGAAAAGATAGTGACTAAAAAATCTTTAACTAAAGAAAATTC
* **
7484665 GTTGTTGATGAATTTAAACTAATTGACAATTTATATAAATCGTGCTTGGCCTATGATAATTAATA
1 GTTGTTGATGAATTTAAACTAATTGACAATTTATATAAATCGTGCTTAGCCTACAATAATTAATA
* *
7484730 TAGTTGCAATAATGTGGAAAAGATAGTGTCTTAAAAATCTTTAACTAAAGAAAA
66 TAGTTGCAATAATGTGGAAAAGATAGTGACTAAAAAATCTTTAACTAAAGAAAA
7484784 GTTTTTTTGT
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
122 109 0.99
123 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (122 bp):
GTTGTTGATGAATTTAAACTAATTGACAATTTATATAAATCGTGCTTAGCCTACAATAATTAATA
TAGTTGCAATAATGTGGAAAAGATAGTGACTAAAAAATCTTTAACTAAAGAAAATTC
Found at i:7489364 original size:20 final size:20
Alignment explanation
Indices: 7489312--7489366 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 20
7489302 AATGTTCTTC
*
7489312 AAAAATCCAAAAAAACACAAA
1 AAAAATTCAAAAAAACA-AAA
* * *
7489333 AAAATTTGAAAAAAA-AATA
1 AAAAATTCAAAAAAACAAAA
7489352 AAAAATTCAAAAAAA
1 AAAAATTCAAAAAAA
7489367 TTCTCAGATG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 15 0.54
20 1 0.04
21 12 0.43
ACGTcount: A:0.76, C:0.09, G:0.02, T:0.13
Consensus pattern (20 bp):
AAAAATTCAAAAAAACAAAA
Found at i:7489795 original size:13 final size:11
Alignment explanation
Indices: 7489771--7489821 Score: 50
Period size: 13 Copynumber: 4.4 Consensus size: 11
7489761 GAATCAGAAC
7489771 AAAAATGAAAAG
1 AAAAA-GAAAAG
7489783 AAGAAGAGAAAAG
1 AA-AA-AGAAAAG
7489796 AAAAAGAAAA-
1 AAAAAGAAAAG
*
7489806 AAAATGAAAATG
1 AAAAAGAAAA-G
7489818 AAAA
1 AAAA
7489822 TATATAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 9 0.26
11 6 0.18
12 8 0.24
13 10 0.29
14 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:7490633 original size:89 final size:89
Alignment explanation
Indices: 7490236--7490710 Score: 380
Period size: 89 Copynumber: 5.3 Consensus size: 89
7490226 CAAGGTCGAG
* * * * * ** *
7490236 AATAAATGATCGGAATGAAACCACGAATCATGTAACCAAGATTAAACCACGAGTTGAAATAAAGC
1 AATAAATGATCGGGATGAAACCACGAATCATGTGATCAAGATGAAAACACGAGTCAAAATAAAGT
* * * * *
7490301 GATCGGGATCGAATCGAGGTCGAA
66 GACCAGGACCGAGTCGAGGTCAAA
* * * * ** * * *
7490325 AATGAATGATTGGGAAGAAACCATGAATCATGTGATCGGGACGAAATCACAAGTCAAAATAAAGT
1 AATAAATGATCGGGATGAAACCACGAATCATGTGATCAAGATGAAAACACGAGTCAAAATAAAGT
* * *
7490390 GACTAAGG-CCAAGTCGAGGTCGAA
66 GAC-CAGGACCGAGTCGAGGTCAAA
* ** * * * *
7490414 AATAAATGATCAGGAT-AAACCATAAATCATGTGATCAGGA-CAAAACCAAGAGTCAAAACAAAG
1 AATAAATGATCGGGATGAAACCACGAATCATGTGATCAAGATGAAAA-CACGAGTCAAAATAAAG
** ** *
7490477 CCACCAGGATTGAGTCGAGGTAAAA
65 TGACCAGGACCGAGTCGAGGTCAAA
* * ** * * * * *
7490502 AATGAATGACCAAGATGAAACCACAAATCCTATGATCGAGATGAAAACACGAGTTAAAATAAAGT
1 AATAAATGATCGGGATGAAACCACGAATCATGTGATCAAGATGAAAACACGAGTCAAAATAAAGT
7490567 GACCAGGACCGAGTCGAGGTCAAA
66 GACCAGGACCGAGTCGAGGTCAAA
* * * * *
7490591 AATAAATGATCGGGATGAAACCATGAATCATGTGACCAAGATGAAATCATGAGTCGAAATAAAGT
1 AATAAATGATCGGGATGAAACCACGAATCATGTGATCAAGATGAAAACACGAGTCAAAATAAAGT
* * * * *
7490656 GACCAAGACTGAGTCAAGGTTAAG
66 GACCAGGACCGAGTCGAGGTCAAA
* * *
7490680 AATAAATGATTGAGATAAAACCACGAATCAT
1 AATAAATGATCGGGATGAAACCACGAATCAT
7490711 AAGAAATGAT
Statistics
Matches: 300, Mismatches: 81, Indels: 10
0.77 0.21 0.03
Matches are distributed among these distances:
87 6 0.02
88 62 0.21
89 226 0.75
90 6 0.02
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (89 bp):
AATAAATGATCGGGATGAAACCACGAATCATGTGATCAAGATGAAAACACGAGTCAAAATAAAGT
GACCAGGACCGAGTCGAGGTCAAA
Found at i:7501761 original size:15 final size:16
Alignment explanation
Indices: 7501736--7501765 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7501726 GACAAAATAA
7501736 TTTTTTCTTTCTTTTC
1 TTTTTTCTTTCTTTTC
7501752 TTTTTT-TTTCTTTT
1 TTTTTTCTTTCTTTT
7501766 TTGTGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTTCTTTCTTTTC
Found at i:7502185 original size:19 final size:19
Alignment explanation
Indices: 7502149--7502190 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
7502139 TCGAAAACTA
* *
7502149 GAAAACCCATTGGTTTCTG
1 GAAAACCCATCGGATTCTG
*
7502168 GAAAACCCATCGGATTCTT
1 GAAAACCCATCGGATTCTG
7502187 GAAA
1 GAAA
7502191 CTTCATCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (19 bp):
GAAAACCCATCGGATTCTG
Found at i:7502802 original size:5 final size:5
Alignment explanation
Indices: 7502762--7502810 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
7502752 AAATGAAAAT
* *
7502762 ATATA ATAATA ATAATA ATA-A ATATA ATATG GTATA ATATA ATATA ATA
1 ATATA AT-ATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
7502811 GAAAAAAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 4 0.11
5 23 0.61
6 11 0.29
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (5 bp):
ATATA
Found at i:7502832 original size:14 final size:13
Alignment explanation
Indices: 7502814--7502838 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7502804 TATAATAGAA
7502814 AAAAAAGAAAATC
1 AAAAAAGAAAATC
7502827 AAAAAAGAAAAT
1 AAAAAAGAAAAT
7502839 ATTGATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.08, T:0.08
Consensus pattern (13 bp):
AAAAAAGAAAATC
Found at i:7508391 original size:206 final size:206
Alignment explanation
Indices: 7508032--7508438 Score: 778
Period size: 206 Copynumber: 2.0 Consensus size: 206
7508022 AAACGGTACC
* *
7508032 AATTGATTACATGTTATCCATTAATTTTGATAAAAACAGTCTTATTTTCGGTATTTGAAAAATAA
1 AATTAATTACATGTTATCCATTAATTTTGATAAAAACAGTCTTATTTTCGATATTTGAAAAATAA
7508097 TTTCCTTGATTTTTCATTTATTAGTTTGAAATTGTTTTTTTATTTAATTTTATTTAGTGCTCAAA
66 TTTCCTTGATTTTTCATTTATTAGTTTGAAATTGTTTTTTTATTTAATTTTATTTAGTGCTCAAA
*
7508162 TTTTATTCGAGAAAAACAAATTAGAACCTTTTTATTGAATTAATTCTTAAAATGTTTCATTACTT
131 TTTTATTCGAGAAAAACAAATTAGAACCTTTTTATTGAATTAATTCTTAAAATGTTTCAGTACTT
7508227 TGGTAATAATT
196 TGGTAATAATT
7508238 AATTAATTACATGTTATCCATTAATTTTGATAAAAACAGTCTTATTTTCGATATTTGAAAAATAA
1 AATTAATTACATGTTATCCATTAATTTTGATAAAAACAGTCTTATTTTCGATATTTGAAAAATAA
*
7508303 TTTTCTTGATTTTTCATTTATTAGTTTGAAATTGTTTTTTTATTTAATTTTATTTAGTGCTCAAA
66 TTTCCTTGATTTTTCATTTATTAGTTTGAAATTGTTTTTTTATTTAATTTTATTTAGTGCTCAAA
7508368 TTTTATTCGAGAAAAACAAATTAGAACCTTTTTATTGAATTAATTCTTAAAATGTTTCAGTACTT
131 TTTTATTCGAGAAAAACAAATTAGAACCTTTTTATTGAATTAATTCTTAAAATGTTTCAGTACTT
7508433 TGGTAA
196 TGGTAA
7508439 CATTAGAAGA
Statistics
Matches: 197, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
206 197 1.00
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (206 bp):
AATTAATTACATGTTATCCATTAATTTTGATAAAAACAGTCTTATTTTCGATATTTGAAAAATAA
TTTCCTTGATTTTTCATTTATTAGTTTGAAATTGTTTTTTTATTTAATTTTATTTAGTGCTCAAA
TTTTATTCGAGAAAAACAAATTAGAACCTTTTTATTGAATTAATTCTTAAAATGTTTCAGTACTT
TGGTAATAATT
Found at i:7510437 original size:44 final size:43
Alignment explanation
Indices: 7510337--7510774 Score: 254
Period size: 49 Copynumber: 9.6 Consensus size: 43
7510327 GGTTTTTCTC
* * * **
7510337 AGCAAAGGTTCAACGACTTTTGAAAATTTTGAGAGGGCTCCTCTA
1 AGCAAAGGCTCAACAAC-TTTAAAAATTTAAAGA-GGCTCCTCTA
*
7510382 AGCAAAAGCTCAACAACTTTAAACAATTTAAAGAGGCTCCTCTA
1 AGCAAAGGCTCAACAACTTTAAA-AATTTAAAGAGGCTCCTCTA
** * * * *
7510426 AGCTTAGGCTCAACGACTTTTAAAAATATAAATA-GCTCATCTA
1 AGCAAAGGCTCAACAAC-TTTAAAAATTTAAAGAGGCTCCTCTA
* *
7510469 AGCAAAAGCTCAACAACTTTAAAAAATTTAAAGAGGCTCCTTTA
1 AGCAAAGGCTCAACAACTTT-AAAAATTTAAAGAGGCTCCTCTA
* * * * *
7510513 AGCAGAGGCTTAATAACTTTTAAAAATATAAA-TGGCTCCTCTA
1 AGCAAAGGCTCAACAAC-TTTAAAAATTTAAAGAGGCTCCTCTA
* * *
7510556 AGCAAAGGCTCAACAACTTTAAAAATTCATATTGAAAAAGCTCTTCTA
1 AGCAAAGGCTCAACAACTTTAAAAATT--TA---AAGAGGCTCCTCTA
* * * *
7510604 AACAGAGGCTCAACAACTTTAAAATTCTCATCTTAAAAAAGCTCCTCTA
1 AGCAAAGGCTCAACAACTTTAAAA-----AT-TTAAAGAGGCTCCTCTA
* * * *
7510653 AACAGAGGCTCAACAACATTAAAATTTTCATCTTAGAA-AAGCTCCTCTA
1 AGCAAAGGCTCAACAACTTTAAAA-----AT-TTA-AAGAGGCTCCTCTA
* * * *
7510702 AGTAGAGGCTCAATAACTTTAAAAATCTCATCTTGAAA-AAGCTCCTCTA
1 AGCAAAGGCTCAACAACTTT-AAAA----AT-TT-AAAGAGGCTCCTCTA
*
7510751 AGCAGAGGCTCAACAACTTTAAAA
1 AGCAAAGGCTCAACAACTTTAAAA
7510775 TTCATCATCT
Statistics
Matches: 326, Mismatches: 47, Indels: 37
0.80 0.11 0.09
Matches are distributed among these distances:
42 12 0.04
43 55 0.17
44 68 0.21
45 31 0.10
47 2 0.01
48 34 0.10
49 112 0.34
50 7 0.02
52 2 0.01
53 2 0.01
54 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.27
Consensus pattern (43 bp):
AGCAAAGGCTCAACAACTTTAAAAATTTAAAGAGGCTCCTCTA
Found at i:7510480 original size:43 final size:44
Alignment explanation
Indices: 7510337--7510581 Score: 255
Period size: 44 Copynumber: 5.6 Consensus size: 44
7510327 GGTTTTTCTC
* * * * **
7510337 AGCAAAGGTTCAACGACTTTTGAAAATTTTGAGAGGGCTCCTCTA
1 AGCAAAGGCTCAACAACTTTTAAAAATATAAAGA-GGCTCCTCTA
* *
7510382 AGCAAAAGCTCAACAAC-TTTAAACAATTTAAAGAGGCTCCTCTA
1 AGCAAAGGCTCAACAACTTTTAAA-AATATAAAGAGGCTCCTCTA
** * * *
7510426 AGCTTAGGCTCAACGACTTTTAAAAATATAAATA-GCTCATCTA
1 AGCAAAGGCTCAACAACTTTTAAAAATATAAAGAGGCTCCTCTA
* * * *
7510469 AGCAAAAGCTCAACAACTTTAAAAAATTTAAAGAGGCTCCTTTA
1 AGCAAAGGCTCAACAACTTTTAAAAATATAAAGAGGCTCCTCTA
* * * *
7510513 AGCAGAGGCTTAATAACTTTTAAAAATATAAA-TGGCTCCTCTA
1 AGCAAAGGCTCAACAACTTTTAAAAATATAAAGAGGCTCCTCTA
7510556 AGCAAAGGCTCAACAAC-TTTAAAAAT
1 AGCAAAGGCTCAACAACTTTTAAAAAT
7510582 TCATATTGAA
Statistics
Matches: 164, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
42 9 0.05
43 58 0.35
44 69 0.42
45 28 0.17
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (44 bp):
AGCAAAGGCTCAACAACTTTTAAAAATATAAAGAGGCTCCTCTA
Found at i:7510489 original size:87 final size:86
Alignment explanation
Indices: 7510373--7510627 Score: 323
Period size: 87 Copynumber: 2.9 Consensus size: 86
7510363 TTTTGAGAGG
**
7510373 GCTCCTCTAAGCAAAAGCTCAACAACTTTAAACAATTTAAAGAGGCTCCTCTAAGCTTAGGCTCA
1 GCTCCTCTAAGCAAAAGCTCAACAACTTTAAA-AATTTAAAGAGGCTCCTCTAAGCAGAGGCTCA
*
7510438 ACGACTTTTAAAAATATAAATA
65 ACAACTTTTAAAAATATAAATA
* * *
7510460 GCTCATCTAAGCAAAAGCTCAACAACTTTAAAAAATTTAAAGAGGCTCCTTTAAGCAGAGGCTTA
1 GCTCCTCTAAGCAAAAGCTCAACAACTTT-AAAAATTTAAAGAGGCTCCTCTAAGCAGAGGCTCA
* *
7510525 ATAACTTTTAAAAATATAAATG
65 ACAACTTTTAAAAATATAAATA
* * * * *
7510547 GCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTCATATTGAAAAAGCTCTTCTAAACAGAGG
1 GCTCCTCTAAGCAAAAGCTCAACAACTTTAAAAATT--TA---AAGAGGCTCCTCTAAGCAGAGG
7510612 CTCAACAAC-TTTAAAA
61 CTCAACAACTTTTAAAA
7510628 TTCTCATCTT
Statistics
Matches: 145, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
86 7 0.05
87 102 0.70
88 5 0.03
90 7 0.05
91 24 0.17
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (86 bp):
GCTCCTCTAAGCAAAAGCTCAACAACTTTAAAAATTTAAAGAGGCTCCTCTAAGCAGAGGCTCAA
CAACTTTTAAAAATATAAATA
Found at i:7510662 original size:49 final size:49
Alignment explanation
Indices: 7510547--7510888 Score: 474
Period size: 49 Copynumber: 7.0 Consensus size: 49
7510537 AATATAAATG
* * *
7510547 GCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAAT-TCATATTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAA
* * *
7510595 GCTCTTCTAAACAGAGGCTCAACAACTTTAAAATTCTCATCTTAAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAA
* * *
7510644 GCTCCTCTAAACAGAGGCTCAACAACATTAAAATTTTCATCTT-AGAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGA-AAAA
* * *
7510693 GCTCCTCTAAGTAGAGGCTCAATAACTTTAAAAATCTCATCTTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAA
*
7510742 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCATCTTGGAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTC-TCATCTTGAAAAA
* * * *
7510792 GCTTCTCTAAGCAAAAGCTCAACAACTTTAAAATTCTCATCTTGGAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAA
* *
7510841 GCTCCTTTAAGTAGAGGCTCAACAACTTTAAAATT-TCATCTTGAAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAA
7510889 TAACTTCGAA
Statistics
Matches: 262, Mismatches: 28, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
48 44 0.17
49 172 0.66
50 46 0.18
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (49 bp):
GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAA
Found at i:7510720 original size:98 final size:96
Alignment explanation
Indices: 7510547--7510887 Score: 475
Period size: 99 Copynumber: 3.5 Consensus size: 96
7510537 AATATAAATG
* * * * *
7510547 GCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTCATATTGAAAAAGCTCTTCTAAACAGAGG
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTTCATCTTG-AAAAGCTCCTCTAAGCAGAGG
*
7510612 CTCAACAACTTTAAAATTCTCATCTTAAAAAA
65 CTCAACAACTTTAAAATTCTCATCTTGAAAAA
* * *
7510644 GCTCCTCTAAACAGAGGCTCAACAACATTAAAATTTTCATCTTAGAAAAGCTCCTCTAAGTAGAG
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAA-TTTCATCTT-GAAAAGCTCCTCTAAGCAGAG
* *
7510709 GCTCAATAACTTTAAAAATCTCATCTTGAAAAA
64 GCTCAACAACTTTAAAATTCTCATCTTGAAAAA
* *
7510742 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTCATCATCTTGGAAAAGCTTCTCTAAGCAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATT--TCATCTT-GAAAAGCTCCTCTAAGCAGA
* *
7510807 AGCTCAACAACTTTAAAATTCTCATCTTGGAAAA
63 GGCTCAACAACTTTAAAATTCTCATCTTGAAAAA
* *
7510841 GCTCCTTTAAGTAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAA
1 GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAA
7510888 ATAACTTCGA
Statistics
Matches: 217, Mismatches: 23, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
96 5 0.02
97 39 0.18
98 85 0.39
99 88 0.41
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (96 bp):
GCTCCTCTAAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAGCTCCTCTAAGCAGAGGC
TCAACAACTTTAAAATTCTCATCTTGAAAAA
Found at i:7511480 original size:99 final size:99
Alignment explanation
Indices: 7511177--7511514 Score: 365
Period size: 99 Copynumber: 3.4 Consensus size: 99
7511167 AAGTGTAGAT
* * * * * * * ** * *
7511177 TCAAACTTTAA-ACTCGAATATCATCACCGAGCATATGCAAATAACTTTGGATATCGCCTTC-GA
1 TCAAGCTTTAACACTCGGATATCACCATCGAGAAGATGCAAATGACTTCAGATATCACC-ACGGA
*
7511240 AGGAAACTTGAATATCACCATCGAGAAAATGCAAA
65 AGGAAACTTGAATATCACCATTGAGAAAATGCAAA
* * * * * * *
7511275 TCAAGCCTTAACACTTGGATATTACCACCGAGAATATGCAAATGACTTCGGATTTCACCACGGAA
1 TCAAGCTTTAACACTCGGATATCACCATCGAGAAGATGCAAATGACTTCAGATATCACCACGGAA
* * * *
7511340 GAAAAACTCGAATATCACCATTGAGCAAATGCAAT
66 G-GAAACTTGAATATCACCATTGAGAAAATGCAAA
* * * *
7511375 TCAAGCTTTAATACTCGGATATCACCATCGAGAAGATGTAAATGACTTCAGATATCGCCACTGAA
1 TCAAGCTTTAACACTCGGATATCACCATCGAGAAGATGCAAATGACTTCAGATATCACCACGGAA
* *
7511440 GGAAACTTAAATATCACTATTGAGAAAATGCAAA
66 GGAAACTTGAATATCACCATTGAGAAAATGCAAA
* *
7511474 TAAAGCTTTAACACTCGGATATCACCATTGAGAAGATGCAA
1 TCAAGCTTTAACACTCGGATATCACCATCGAGAAGATGCAA
7511515 TTCAAACCTT
Statistics
Matches: 199, Mismatches: 38, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
98 10 0.05
99 106 0.53
100 83 0.42
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (99 bp):
TCAAGCTTTAACACTCGGATATCACCATCGAGAAGATGCAAATGACTTCAGATATCACCACGGAA
GGAAACTTGAATATCACCATTGAGAAAATGCAAA
Found at i:7511513 original size:42 final size:42
Alignment explanation
Indices: 7511450--7511558 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
7511440 GGAAACTTAA
* * * *
7511450 ATATCACTATTGAGAAAATGCAAAT-AAAGCTTTAACACTCGG
1 ATATCACCATTGAGAAGATGCAAATCAAA-CCTTAACACTCAG
* * *
7511492 ATATCACCATTGAGAAGATGCAATTCAAACCTTAACATTTAG
1 ATATCACCATTGAGAAGATGCAAATCAAACCTTAACACTCAG
* *
7511534 ATATCACCATCGAAAAGATGCAAAT
1 ATATCACCATTGAGAAGATGCAAAT
7511559 GACTTTTTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 53 0.95
43 3 0.05
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (42 bp):
ATATCACCATTGAGAAGATGCAAATCAAACCTTAACACTCAG
Found at i:7512310 original size:33 final size:34
Alignment explanation
Indices: 7512260--7512346 Score: 106
Period size: 35 Copynumber: 2.6 Consensus size: 34
7512250 ATTATGATGC
* * *
7512260 AAATGTCTTCTCTTAAAATGA-G-GATGCAAATAT
1 AAATGTCTTTTCTTAAAATGATGACATG-AAATAA
*
7512293 AAATGTCTTTTCCTAAAATGATGCACATGAAATAA
1 AAATGTCTTTTCTTAAAATGATG-ACATGAAATAA
7512328 AAATGTCTTTTCTTAAAAT
1 AAATGTCTTTTCTTAAAAT
7512347 ACCAATACAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
33 19 0.41
34 1 0.02
35 23 0.50
36 3 0.07
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (34 bp):
AAATGTCTTTTCTTAAAATGATGACATGAAATAA
Found at i:7518526 original size:14 final size:14
Alignment explanation
Indices: 7518509--7518549 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
7518499 ATTTTAAATT
7518509 ATTATTTTTTATTA
1 ATTATTTTTTATTA
* *
7518523 ATTAATTTTTATCA
1 ATTATTTTTTATTA
*
7518537 ATTATTTTATATT
1 ATTATTTTTTATT
7518550 TTTCTTTATT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTATTTTTTATTA
Found at i:7521620 original size:180 final size:180
Alignment explanation
Indices: 7521300--7521700 Score: 534
Period size: 180 Copynumber: 2.2 Consensus size: 180
7521290 TTTTTGTACG
* * * * * *
7521300 TTAAAAATTAAACTCGATAAACTTTTTAACCATATATGGCTCACCTCGTAATTTCTTGTAAATTA
1 TTAAAAAGTAGACTC-AAAAACTTTTCAAACATATATGGCCCACCTCGTAATTTCTTGTAAATTA
* ** * *
7521365 ATTGTAATAACGTTTGCAATCCATGTCATATGCTATTATTAGATAGCATGTATATTTTCTAATAA
65 ATTGTAATAACGTTTGCAATCCATGTCATATGCTACTACCAGAGAGCATGTATATATTCTAATAA
*
7521430 AAATTATATATTTATTCATAAAAGACTCCAAATTCAATTCTGGTTGTTTCA
130 AAATTATATATTTATTCATAAAAGACTCCAAATTCAATTCTGCTTGTTTCA
* *
7521481 TTAAAAAGTAGACTCAAAAACTTTTCAAACATATATGGCCCACCTTGTAATTTCTTGTAGATTAA
1 TTAAAAAGTAGACTCAAAAACTTTTCAAACATATATGGCCCACCTCGTAATTTCTTGTAAATTAA
** * * *
7521546 TTGTAATAATTTTTTCAATCCATGTCATATGCTGCTACCAGAGAGCATGTATATATTCTAATCAA
66 TTGTAATAACGTTTGCAATCCATGTCATATGCTACTACCAGAGAGCATGTATATATTCTAATAAA
* * *
7521611 AATTATATATTTATTTATAAAGGACTCCAAATTCAATTCTGCTTGTTTGA
131 AATTATATATTTATTCATAAAAGACTCCAAATTCAATTCTGCTTGTTTCA
** * *
7521661 TTGGAATGTAGACTCAATAACATTTTCAAACA-AGTATGGC
1 TTAAAAAGTAGACTCAAAAAC-TTTTCAAACATA-TATGGC
7521701 TCAGTTCATA
Statistics
Matches: 192, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
180 163 0.85
181 29 0.15
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (180 bp):
TTAAAAAGTAGACTCAAAAACTTTTCAAACATATATGGCCCACCTCGTAATTTCTTGTAAATTAA
TTGTAATAACGTTTGCAATCCATGTCATATGCTACTACCAGAGAGCATGTATATATTCTAATAAA
AATTATATATTTATTCATAAAAGACTCCAAATTCAATTCTGCTTGTTTCA
Found at i:7526724 original size:122 final size:122
Alignment explanation
Indices: 7526571--7526810 Score: 347
Period size: 122 Copynumber: 2.0 Consensus size: 122
7526561 AATTCAAATG
* * *
7526571 TTGTTGGTGAATTTAAAATAATTGACAATTTATATAAA-CTGTGCTTAGCCTACAATAATTAATA
1 TTGTTGATGAATTTAAAATAATTGAAAATTTATATAAATC-ATGCTTAGCCTACAATAATTAATA
* * *
7526635 TTATTGCAATAATGTTGAAAAGATAGTGACTAAAAAATCTTTGACTAAAGAAAATTCA
65 TAATTGCAATAATGTGGAAAAGATAGTGACTAAAAAATCTTTAACTAAAGAAAATTCA
* * * *
7526693 TTGTTGATGAATTTATACTAATTGAAAATTTATATAAATCATGCTTGGCCTATAATAATTAATAT
1 TTGTTGATGAATTTAAAATAATTGAAAATTTATATAAATCATGCTTAGCCTACAATAATTAATAT
** *
7526758 AATTGCAATAATGTGGAAAAGATAGTGTTTTAAAAATCTTTAACTAAAGAAAA
66 AATTGCAATAATGTGGAAAAGATAGTGACTAAAAAATCTTTAACTAAAGAAAA
7526811 GTCTTTTTTG
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
122 103 0.99
123 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (122 bp):
TTGTTGATGAATTTAAAATAATTGAAAATTTATATAAATCATGCTTAGCCTACAATAATTAATAT
AATTGCAATAATGTGGAAAAGATAGTGACTAAAAAATCTTTAACTAAAGAAAATTCA
Found at i:7528700 original size:16 final size:15
Alignment explanation
Indices: 7528671--7528703 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
7528661 AAAACTTTTC
7528671 TTTCTTTTTTTTCCT
1 TTTCTTTTTTTTCCT
7528686 TTTCTTTTCTTTTCCT
1 TTTCTTTT-TTTTCCT
7528702 TT
1 TT
7528704 ATTTATATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTCTTTTTTTTCCT
Found at i:7531291 original size:21 final size:21
Alignment explanation
Indices: 7531274--7531413 Score: 115
Period size: 21 Copynumber: 6.6 Consensus size: 21
7531264 TTGATTTTAA
*
7531274 TAACATTTGATAAAATTTTGG
1 TAACATTTGATATAATTTTGG
* *
7531295 TAACTTTTTATATAATTTTGG
1 TAACATTTGATATAATTTTGG
*
7531316 TAAC-TTATGATATAATTATGG
1 TAACATT-TGATATAATTTTGG
*
7531337 TAACCA-TTGATACAATTTTGG
1 TAA-CATTTGATATAATTTTGG
* * * **
7531358 TAA-TTTCTAATAAAATTTTAA
1 TAACATT-TGATATAATTTTGG
7531379 TAACATTTTGATATAATTTTGG
1 TAACA-TTTGATATAATTTTGG
*
7531401 TAATCTTTTGATA
1 TAA-CATTTGATA
7531414 ACTTATGATA
Statistics
Matches: 93, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
20 3 0.03
21 65 0.70
22 22 0.24
23 3 0.03
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (21 bp):
TAACATTTGATATAATTTTGG
Found at i:7531424 original size:32 final size:33
Alignment explanation
Indices: 7531373--7531436 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
7531363 TCTAATAAAA
*
7531373 TTTTAATAACATTTTGATATAATTTTGGTAATC
1 TTTTAATAACATTATGATATAATTTTGGTAATC
*
7531406 TTTTGATAAC-TTATGATATAATTTTGGTAAT
1 TTTTAATAACATTATGATATAATTTTGGTAAT
7531437 TATTGAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 20 0.69
33 9 0.31
ACGTcount: A:0.33, C:0.05, G:0.11, T:0.52
Consensus pattern (33 bp):
TTTTAATAACATTATGATATAATTTTGGTAATC
Found at i:7531814 original size:16 final size:17
Alignment explanation
Indices: 7531785--7531820 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7531775 AATTTTGAAA
*
7531785 ATTTTTATATAATTTTG
1 ATTTTGATATAATTTTG
7531802 ATTTTGATA-AATTTTG
1 ATTTTGATATAATTTTG
7531818 ATT
1 ATT
7531821 AAATTTTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (17 bp):
ATTTTGATATAATTTTG
Found at i:7531824 original size:47 final size:48
Alignment explanation
Indices: 7531747--7531847 Score: 116
Period size: 47 Copynumber: 2.1 Consensus size: 48
7531737 ACTAATAATT
* *
7531747 TAATTGTGATTTTGATATAATATAAGTAAATTTT-GAAAATTTTTATA
1 TAATTTTGATTTTGATATAATATAAGTAAATTTTGGAAAACTTTTATA
* * * * *
7531794 TAATTTTGATTTTGATA-AATTTTGATTAAATTTTGGTAACCTTTTATA
1 TAATTTTGATTTTGATATAA-TATAAGTAAATTTTGGAAAACTTTTATA
7531842 TAATTT
1 TAATTT
7531848 CGGTAACTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
46 2 0.04
47 27 0.60
48 16 0.36
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (48 bp):
TAATTTTGATTTTGATATAATATAAGTAAATTTTGGAAAACTTTTATA
Found at i:7531825 original size:11 final size:10
Alignment explanation
Indices: 7531773--7531828 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 10
7531763 ATAATATAAG
7531773 TAAATTTTGA
1 TAAATTTTGA
*
7531783 -AAATTTTTA
1 TAAATTTTGA
7531792 TATAATTTTG-
1 TA-AATTTTGA
7531802 ---ATTTTGA
1 TAAATTTTGA
7531809 TAAATTTTGA
1 TAAATTTTGA
7531819 TTAAATTTTG
1 -TAAATTTTG
7531829 GTAACCTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
6 6 0.16
9 8 0.22
10 8 0.22
11 15 0.41
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (10 bp):
TAAATTTTGA
Found at i:7531825 original size:27 final size:26
Alignment explanation
Indices: 7531776--7531828 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 26
7531766 ATATAAGTAA
*
7531776 ATTTTGAAAATTTTTATATAATTTTG
1 ATTTTGAAAATTTTGATATAATTTTG
7531802 ATTTTGATAAATTTTGAT-TAAATTTTG
1 ATTTTGA-AAATTTTGATAT-AATTTTG
7531829 GTAACCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (26 bp):
ATTTTGAAAATTTTGATATAATTTTG
Found at i:7531846 original size:21 final size:21
Alignment explanation
Indices: 7531822--7531921 Score: 98
Period size: 21 Copynumber: 4.8 Consensus size: 21
7531812 ATTTTGATTA
*
7531822 AATTTTGGTAACCTTTTATAT
1 AATTTTGGTAACCTTTAATAT
*
7531843 AATTTCGGTAA-CTTATAATAT
1 AATTTTGGTAACCTT-TAATAT
* *
7531864 AATTTTGGTAACCATTAATAC
1 AATTTTGGTAACCTTTAATAT
*
7531885 AATTTTGGTAA--TTTCGAATAA
1 AATTTTGGTAACCTTT--AATAT
*
7531906 AATTTTAGTAACCTTT
1 AATTTTGGTAACCTTT
7531922 TGATGTAATT
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
19 2 0.03
20 3 0.05
21 55 0.85
22 2 0.03
23 3 0.05
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (21 bp):
AATTTTGGTAACCTTTAATAT
Found at i:7531889 original size:42 final size:42
Alignment explanation
Indices: 7531821--7531918 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
7531811 AATTTTGATT
* * * *
7531821 AAATTTTGGTAACCTTTTATATAATTTCGGTAACTTATAATA
1 AAATTTTGGTAACCATTAATACAATTTCGGTAACTTAGAATA
* * * *
7531863 TAATTTTGGTAACCATTAATACAATTTTGGTAATTTCGAATA
1 AAATTTTGGTAACCATTAATACAATTTCGGTAACTTAGAATA
*
7531905 AAATTTTAGTAACC
1 AAATTTTGGTAACC
7531919 TTTTGATGTA
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (42 bp):
AAATTTTGGTAACCATTAATACAATTTCGGTAACTTAGAATA
Found at i:7531932 original size:22 final size:22
Alignment explanation
Indices: 7531906--7531947 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7531896 TTTCGAATAA
7531906 AATTTTAGTAACCTTTTGATGT
1 AATTTTAGTAACCTTTTGATGT
*
7531928 AATTTTAGTAATCTTTTGAT
1 AATTTTAGTAACCTTTTGAT
7531948 ATCTTATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.52
Consensus pattern (22 bp):
AATTTTAGTAACCTTTTGATGT
Found at i:7532361 original size:534 final size:533
Alignment explanation
Indices: 7531221--7533620 Score: 3140
Period size: 534 Copynumber: 4.5 Consensus size: 533
7531211 TAATAATTAA
* * * * *
7531221 ATTTTGAT-TAATATTAGTAAATTTTGATAATTTTTACATAATTTTGATTTTAATAACATTTGAT
1 ATTTTGATATAATATAAGTAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGAT
* *
7531285 AAAATTTTGGTAACTTTTTATATAATTTTGGTAACTTATGATATAATTATGGTAACCATTGATAC
66 AAAATTTTGGTAACCTTTTATATAATTTTGGTAACTTATGATATAATTTTGGTAACCATTGATAC
* * * * *
7531350 AATTTTGGTAATTTCTAATAAAATTTTAATAACATTTTGATATAATTTTGGTAATCTTTTGATAA
131 AATTTTGGTAATTTCTAATAAAATTTTAGTAACCTTTTGATGTAATTTTAGTAATATTTTGATAA
* * * *
7531415 CTTATGATATAATTTTGGTAATTATTGAAAAAATATGTGTCATCATATATTTAGCAATAGATTCT
196 CTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATATATTTAACAATAGATTCT
* * * * * * *
7531480 TATAAGAAAGCGCAAGTTC-AGTCTGGTATAAGATATATATATATATTTATATAATAACATTATT
261 TATAAGAAAG-GCAAGGTCAATTCTAGTATAAGATA-A-ATTTCTTTTTATACAATAACATTATT
* * * *
7531544 GTTTCATTTAAATTTAGTATTTTTGTTTACTAAATTTTTTTAGTAAATAAGTTTATAGTAAGTTT
323 ATTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATAAGTTTATAGTAAGTTT
* * ** * *
7531609 ATCCTAGTCTCC-CAAAATAAATTTTCTAACTCTATTTTTTTTAGTAACTAAGATTAAATTGTGT
388 ATCCTAGTC-CCTCAAGATAAAATTTCTAACTCTATTTTTACTAGTAACCAAGATTCAATTGTGT
*
7531673 AATT-TTATCTTTAAAAATTCATTCCAATAAATAATTTTTTTATACTATGATAATAATGATAAAT
452 AATTCTTATCTTTAAAAATTCATTCCAATAAATAA-TTTTTTATACTATGATAATAATAATAAAT
*
7531737 ACTAATAATTTAATTGTG
516 ACTAATAATTTAATTTTG
* * **
7531755 ATTTTGATATAATATAAGTAAATTTTGAAAATTTTTATATAATTTTGATTTTGATAAATTTTGAT
1 ATTTTGATATAATATAAGTAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGAT
* * * *
7531820 TAAATTTTGGTAACCTTTTATATAATTTCGGTAACTTATAATATAATTTTGGTAACCATTAATAC
66 AAAATTTTGGTAACCTTTTATATAATTTTGGTAACTTATGATATAATTTTGGTAACCATTGATAC
* * *
7531885 AATTTTGGTAATTTCGAATAAAATTTTAGTAACCTTTTGATGTAATTTTAGTAATCTTTTGATAT
131 AATTTTGGTAATTTCTAATAAAATTTTAGTAACCTTTTGATGTAATTTTAGTAATATTTTGATAA
* * *
7531950 CTTATGATATACTTTTTGTAATTATTGATAAAATTTGTGTTC-TTATATATTTAACAACAGATTC
196 CTTATGATATACTTTTGGTAATTATTGATAAAATTTGTG-TCATCATATATTTAACAATAGATTC
* *
7532014 TTATAAGAAA-GCAAGGGGTCAATTCTTGTATAAGATAACATTT-TTTTTATATAATAACATTAT
260 TTATAAGAAAGGCAA--GGTCAATTCTAGTATAAGATAA-ATTTCTTTTTATACAATAACATTAT
* *
7532077 TATTTCTTTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATAGGTTTATAGTAAGTT
322 TATTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATAAGTTTATAGTAAGTT
* * * *
7532142 TATCTTAGTCCCTCAAGATAAAATTTCTAACTTTATTTTTACTAGTAACCAAGTTTCAATAGTGT
387 TATCCTAGTCCCTCAAGATAAAATTTCTAACTCTATTTTTACTAGTAACCAAGATTCAATTGTGT
* *
7532207 AATTCTTATATTTAAAAATTCATTCCAATAAATAATTTTTTATGCTATGATAATAATAATAAATA
452 AATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTATGATAATAATAATAAATA
*
7532272 CTAATAATTTAATTTTC
517 CTAATAATTTAATTTTG
* *
7532289 ATTTTGATATAATATAAGTAAACTTTGATAATTTTTATATAATTTTAATTTTGATAACCTTTGAT
1 ATTTTGATATAATATAAGTAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGAT
** *
7532354 AAAATTTTGGTAA-CTTTCTATATAA-TTTGGTAACTTATGATATAATTTTGGTAATAACTGATA
66 AAAATTTTGGTAACCTTT-TATATAATTTTGGTAACTTATGATATAATTTTGGTAACCATTGATA
*
7532417 CAATTTTGGTAATTTCTAATAAAATTTT-GATAACCTTTTGATATAATTTTAGTAATATTTTGAT
130 CAATTTTGGTAATTTCTAATAAAATTTTAG-TAACCTTTTGATGTAATTTTAGTAATATTTTGAT
* * * * *
7532481 AACTTATGATATACCTTTGGTAATTATTGATAAAATTTCTATCATCATATATTTAACATTATATT
194 AACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATATATTTAACAATAGATT
** * * *
7532546 CTTATTGGAAA-GCATAGGTCTAGTTCTAGTATATGATAATTTTCTATTTTATACAATAACATTA
259 CTTATAAGAAAGGCA-AGGTC-AATTCTAGTATAAGATAAATTTCT-TTTTATACAATAACATTA
* * * * *
7532610 TTGTTTCATTTAAATTTAGAAGTTTTGTTCACTGAATGTTTTTATTAAATAAGTTTATGGTAAGT
321 TTATTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATAAGTTTATAGTAAGT
* * * * *
7532675 TTATCCTAGTCCCTCAAGATGAAATATT-TAACTCTATTTTTCCTAGTAATCAAGTTTTAATTGT
386 TTATCCTAGTCCCTCAAGATAAAAT-TTCTAACTCTATTTTTACTAGTAACCAAGATTCAATTGT
* * * * *
7532739 GTAATTATTATCTTTAAAAATCCATTCCAATAAATAATTTTTTATGCTATAATAATAATGATAAA
450 GTAATTCTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTATGATAATAATAATAAA
* * *
7532804 TAC-ATATTATATGATTTTG
515 TACTA-ATAATTTAATTTTG
* *
7532823 ATTTTGATATAATATAAGTAAAATTTGATTACTTTTATATAATTTTGATTTTGATAACCTTTGAT
1 ATTTTGATATAATATAAGTAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGAT
* *
7532888 AAAA-TTTGGTAAGCTTCTATATAATTTTGGTAACTTATGATATAATTTTGGTAACCATTGATAC
66 AAAATTTTGGTAACCTTTTATATAATTTTGGTAACTTATGATATAATTTTGGTAACCATTGATAC
* * * * * ** *
7532952 AATTTTGGCAATTTTTTTATAAAATTTTGGTAAGCTTTCAATGTAATTTTAGTAATATTTTGTTA
131 AATTTTGGTAA-TTTCTAATAAAATTTTAGTAACCTTTTGATGTAATTTTAGTAATATTTTGATA
* * * * *
7533017 GCATACGATATACTTTTGGTAATTATTGATAAAATTTATGTCATAATATATTTAACAATAGATTC
195 ACTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATATATTTAACAATAGATTC
* * * * * *
7533082 TTATAGGAAAGTGCAAGTTCAATTCTAGTATAAAATAATTTTCTTTTTACACAACAACATTATTA
260 TTATAAGAAAG-GCAAGGTCAATTCTAGTATAAGATAAATTTCTTTTTATACAATAACATTATTA
* * * *
7533147 TTTCATTTAAATTTAAAACTTTTGTTCACTAAATTTTTTTATTAAATAGGTTTATGGTAAGTTTA
324 TTTCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATAAGTTTATAGTAAGTTTA
* ** * * * *
7533212 TTCTAGTCTTTCAAGATAAAATTTCTAAATCTATTTTTGCTAGTAACCATGATTCAATTGCGTAA
389 TCCTAGTCCCTCAAGATAAAATTTCTAACTCTATTTTTACTAGTAACCAAGATTCAATTGTGTAA
7533277 TTCTTATCTTTAAAAATTCATTCCAATAAATAAATTTTTTATACTATGATAATAATAATAATAAA
454 TTCTTATCTTTAAAAATTCATTCCAATAAAT-AATTTTTTATACTATG---ATAATAATAATAAA
7533342 TACTAATAATTTAATTTTG
515 TACTAATAATTTAATTTTG
* *
7533361 ATTTTGACATAATATAA-TAAAATTTGGTAATTTTTATATAATTTTGATTTTGATAACCTTTGAT
1 ATTTTGATATAATATAAGTAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGAT
* * * * **
7533425 AAAATTTTTGTAACCATCTCTATAATTTTGGTAACTTATGATATAATTTTTATAACCATTGATAC
66 AAAATTTTGGTAACCTTTTATATAATTTTGGTAACTTATGATATAATTTTGGTAACCATTGATAC
* * * * ** * * *
7533490 AATTTTGATAATTTTTGATAAAATTTTGGTGTCCTTTTTATGTAATTTTAGTAATTTTTTAATAA
131 AATTTTGGTAATTTCTAATAAAATTTTAGTAACCTTTTGATGTAATTTTAGTAATATTTTGATAA
* * * *
7533555 CTTATGATATA-TTTCTTGTAATTATTGATAAAATGTGTGTTATCATATATTTAACAGTAGATTC
196 CTTATGATATACTTT-TGGTAATTATTGATAAAATTTGTGTCATCATATATTTAACAATAGATTC
7533619 TT
260 TT
7533621 CTAGAAAAAC
Statistics
Matches: 1643, Mismatches: 193, Indels: 57
0.87 0.10 0.03
Matches are distributed among these distances:
532 10 0.01
533 200 0.12
534 739 0.45
535 414 0.25
536 24 0.01
537 149 0.09
538 106 0.06
539 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.47
Consensus pattern (533 bp):
ATTTTGATATAATATAAGTAAAATTTGATAATTTTTATATAATTTTGATTTTGATAACCTTTGAT
AAAATTTTGGTAACCTTTTATATAATTTTGGTAACTTATGATATAATTTTGGTAACCATTGATAC
AATTTTGGTAATTTCTAATAAAATTTTAGTAACCTTTTGATGTAATTTTAGTAATATTTTGATAA
CTTATGATATACTTTTGGTAATTATTGATAAAATTTGTGTCATCATATATTTAACAATAGATTCT
TATAAGAAAGGCAAGGTCAATTCTAGTATAAGATAAATTTCTTTTTATACAATAACATTATTATT
TCATTTAAATTTAGAATTTTTGTTCACTAAATTTTTTTATTAAATAAGTTTATAGTAAGTTTATC
CTAGTCCCTCAAGATAAAATTTCTAACTCTATTTTTACTAGTAACCAAGATTCAATTGTGTAATT
CTTATCTTTAAAAATTCATTCCAATAAATAATTTTTTATACTATGATAATAATAATAAATACTAA
TAATTTAATTTTG
Found at i:7532382 original size:20 final size:21
Alignment explanation
Indices: 7532334--7532471 Score: 104
Period size: 21 Copynumber: 6.6 Consensus size: 21
7532324 TATATAATTT
*
7532334 TAATTTTGATAACCTT-TGATA
1 TAATTTTGGTAA-CTTATGATA
* *
7532355 AAATTTTGGTAACTT-TCTATA
1 TAATTTTGGTAACTTAT-GATA
7532376 TAA-TTTGGTAACTTATGATA
1 TAATTTTGGTAACTTATGATA
*
7532396 TAATTTTGGTAA-TAACTGATA
1 TAATTTTGGTAACTTA-TGATA
* * * *
7532417 CAATTTTGGTAATTTCTAATA
1 TAATTTTGGTAACTTATGATA
* * *
7532438 AAATTTTGATAACCTTTTGATA
1 TAATTTTGGTAA-CTTATGATA
*
7532460 TAATTTTAGTAA
1 TAATTTTGGTAA
7532472 TATTTTGATA
Statistics
Matches: 93, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
20 23 0.25
21 54 0.58
22 16 0.17
ACGTcount: A:0.36, C:0.07, G:0.11, T:0.46
Consensus pattern (21 bp):
TAATTTTGGTAACTTATGATA
Found at i:7532402 original size:62 final size:64
Alignment explanation
Indices: 7532334--7532466 Score: 155
Period size: 62 Copynumber: 2.1 Consensus size: 64
7532324 TATATAATTT
*** * *
7532334 TAATTTTGATAACCTTTGATAAAATTTTGGTAACTTTCT-ATATAA-TTTGGTAA-CTTATGATA
1 TAATTTTGATAACAACTGATAAAATTTTGGTAA-TTTCTAATAAAATTTTGATAACCTTATGATA
* * * *
7532396 TAATTTTGGTAATAACTGATACAATTTTGGTAATTTCTAATAAAATTTTGATAACCTTTTGATA
1 TAATTTTGATAACAACTGATAAAATTTTGGTAATTTCTAATAAAATTTTGATAACCTTATGATA
7532460 TAATTTT
1 TAATTTT
7532467 AGTAATATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
61 5 0.08
62 32 0.54
63 7 0.12
64 15 0.25
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.47
Consensus pattern (64 bp):
TAATTTTGATAACAACTGATAAAATTTTGGTAATTTCTAATAAAATTTTGATAACCTTATGATA
Found at i:7532422 original size:41 final size:42
Alignment explanation
Indices: 7532335--7532450 Score: 112
Period size: 41 Copynumber: 2.8 Consensus size: 42
7532325 ATATAATTTT
* ** *
7532335 AATTTTGATAACCTT-TGATAAAATTTTGGTAACTTTCTATAT
1 AATTTTGGTAA-CTTATGATAAAATTTTGGTAACTAACTATAC
*
7532377 AA-TTTGGTAACTTATGATATAATTTTGGTAA-TAACTGATAC
1 AATTTTGGTAACTTATGATAAAATTTTGGTAACTAACT-ATAC
* * * *
7532418 AATTTTGGTAATTTCTAATAAAATTTTGATAAC
1 AATTTTGGTAACTTATGATAAAATTTTGGTAAC
7532451 CTTTTGATAT
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
40 6 0.10
41 28 0.47
42 26 0.43
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (42 bp):
AATTTTGGTAACTTATGATAAAATTTTGGTAACTAACTATAC
Found at i:7532480 original size:33 final size:33
Alignment explanation
Indices: 7532426--7532493 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
7532416 ACAATTTTGG
*
7532426 TAATTTCTAATAAAATTTTGATAACCTTTTGATA
1 TAATTTCTAATAAAATTTTGATAA-CTTATGATA
* *
7532460 TAATTT-TAGTAATATTTTGATAACTTATGATA
1 TAATTTCTAATAAAATTTTGATAACTTATGATA
7532492 TA
1 TA
7532494 CCTTTGGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 10 0.32
33 15 0.48
34 6 0.19
ACGTcount: A:0.38, C:0.06, G:0.07, T:0.49
Consensus pattern (33 bp):
TAATTTCTAATAAAATTTTGATAACTTATGATA
Found at i:7532504 original size:32 final size:33
Alignment explanation
Indices: 7532440--7532513 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 33
7532430 TTCTAATAAA
* *
7532440 ATTTTGATAACCTTTTGATATAATTTTAGTAAT
1 ATTTTGATAACCTTATGATATAACTTTAGTAAT
* *
7532473 ATTTTGATAA-CTTATGATATACCTTTGGTAAT
1 ATTTTGATAACCTTATGATATAACTTTAGTAAT
*
7532505 -TATTGATAA
1 ATTTTGATAA
7532514 AATTTCTATC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 8 0.22
32 18 0.50
33 10 0.28
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.49
Consensus pattern (33 bp):
ATTTTGATAACCTTATGATATAACTTTAGTAAT
Found at i:7532917 original size:21 final size:21
Alignment explanation
Indices: 7532870--7532959 Score: 80
Period size: 21 Copynumber: 4.3 Consensus size: 21
7532860 TATAATTTTG
*
7532870 ATTTTGATAACCTT-TGATA-A
1 ATTTTGGTAA-CTTATGATATA
* *
7532890 AATTTGGTAAGCTTCT-ATATA
1 ATTTTGGTAA-CTTATGATATA
7532911 ATTTTGGTAACTTATGATATA
1 ATTTTGGTAACTTATGATATA
* *
7532932 ATTTTGGTAAC-CATTGATACA
1 ATTTTGGTAACTTA-TGATATA
7532953 ATTTTGG
1 ATTTTGG
7532960 CAATTTTTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
20 19 0.32
21 40 0.68
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.44
Consensus pattern (21 bp):
ATTTTGGTAACTTATGATATA
Found at i:7533438 original size:21 final size:21
Alignment explanation
Indices: 7533408--7533516 Score: 71
Period size: 21 Copynumber: 5.1 Consensus size: 21
7533398 ATAATTTTGA
7533408 TTTTGATAACCTTTGATAAAAT
1 TTTTG-TAACCTTTGATAAAAT
* * *
7533430 TTTTGTAACCATCT-CTATAAT
1 TTTTGTAACC-TTTGATAAAAT
* *
7533451 TTTGGTAA-CTTATGATATAAT
1 TTTTGTAACCTT-TGATAAAAT
* * *
7533472 TTTTATAACCATTGATACAA-
1 TTTTGTAACCTTTGATAAAAT
**
7533492 TTTTGATAATTTTTGATAAAAT
1 TTTTG-TAACCTTTGATAAAAT
7533514 TTT
1 TTT
7533517 GGTGTCCTTT
Statistics
Matches: 66, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
19 1 0.02
20 6 0.09
21 47 0.71
22 12 0.18
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (21 bp):
TTTTGTAACCTTTGATAAAAT
Found at i:7533467 original size:42 final size:41
Alignment explanation
Indices: 7533407--7533516 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 41
7533397 TATAATTTTG
* * *
7533407 ATTTTGATAACCTTTGATAAAATTTTTGTAACCATCT-CTATA
1 ATTTTGATAA-CTTTGATAAAATTTTTATAACCAT-TGATACA
* *
7533449 ATTTTGGTAACTTATGATATAATTTTTATAACCATTGATACA
1 ATTTTGATAACTT-TGATAAAATTTTTATAACCATTGATACA
*
7533491 ATTTTGATAATTTTTGATAAAATTTT
1 ATTTTGATAA-CTTTGATAAAATTTT
7533517 GGTGTCCTTT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
41 4 0.07
42 51 0.89
43 2 0.04
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.48
Consensus pattern (41 bp):
ATTTTGATAACTTTGATAAAATTTTTATAACCATTGATACA
Found at i:7534460 original size:21 final size:21
Alignment explanation
Indices: 7534412--7534515 Score: 79
Period size: 21 Copynumber: 5.0 Consensus size: 21
7534402 TTGATAACCT
* * *
7534412 TTGATAAAATTTTTGTAACCA
1 TTGATATAATTTTGGTAACTA
*
7534433 TCT-ATATAATTTTGGTAGCT-
1 T-TGATATAATTTTGGTAACTA
*
7534453 TATGATATAATTTTGATAACTA
1 T-TGATATAATTTTGGTAACTA
* *
7534475 TTGATACAATTTTGGTAA-TT
1 TTGATATAATTTTGGTAACTA
* *
7534495 TCTAATAAAATTTTGGTAACT
1 T-TGATATAATTTTGGTAACT
7534516 TTTTTATGTA
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
20 4 0.06
21 59 0.89
22 3 0.05
ACGTcount: A:0.35, C:0.08, G:0.12, T:0.46
Consensus pattern (21 bp):
TTGATATAATTTTGGTAACTA
Found at i:7534905 original size:20 final size:20
Alignment explanation
Indices: 7534877--7534915 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7534867 TTGATAACTT
*
7534877 TTGATAAAATTTTAATAACC
1 TTGACAAAATTTTAATAACC
*
7534897 TTGACAAAATTTTAGTAAC
1 TTGACAAAATTTTAATAAC
7534916 TTTCAATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (20 bp):
TTGACAAAATTTTAATAACC
Found at i:7535324 original size:44 final size:44
Alignment explanation
Indices: 7535275--7535389 Score: 113
Period size: 44 Copynumber: 2.6 Consensus size: 44
7535265 ACGATTAACA
* * * *
7535275 ATTAAATTATTATTGATTTACTATTATATTATCAGTAACTGACT
1 ATTAAATTATTATTGATTTACTACTAAATTATAAATAACTGACT
* * * * * *
7535319 ATTAAATTATCAATGATATACTACTAAATTATAAATTATTTACT
1 ATTAAATTATTATTGATTTACTACTAAATTATAAATAACTGACT
* * *
7535363 ACTAAATTAGTATTGATTTATTACTAA
1 ATTAAATTATTATTGATTTACTACTAA
7535390 TTTAAGAATG
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (44 bp):
ATTAAATTATTATTGATTTACTACTAAATTATAAATAACTGACT
Found at i:7535341 original size:22 final size:22
Alignment explanation
Indices: 7535275--7535371 Score: 72
Period size: 22 Copynumber: 4.4 Consensus size: 22
7535265 ACGATTAACA
* * *
7535275 ATTAAATTATTATTGATTTACT
1 ATTAAATTATCAATGATATACT
* *
7535297 ATTATATTATCAGT-A-ACTGACT
1 ATTAAATTATCAATGATA-T-ACT
7535319 ATTAAATTATCAATGATATACT
1 ATTAAATTATCAATGATATACT
* * * *
7535341 ACTAAATTATAAATTATTTACT
1 ATTAAATTATCAATGATATACT
*
7535363 ACTAAATTA
1 ATTAAATTA
7535372 GTATTGATTT
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
21 2 0.03
22 56 0.92
23 2 0.03
24 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTAAATTATCAATGATATACT
Found at i:7535444 original size:22 final size:22
Alignment explanation
Indices: 7535321--7535450 Score: 102
Period size: 22 Copynumber: 5.9 Consensus size: 22
7535311 AACTGACTAT
* * *
7535321 TAAATTATCAATGATATACTAC
1 TAAATTATAAATGATTTATTAC
* *
7535343 TAAATTATAAATTATTTACTAC
1 TAAATTATAAATGATTTATTAC
*
7535365 TAAATTAGT-ATTGATTTATTAC
1 TAAATTA-TAAATGATTTATTAC
* * *
7535387 TAATTTA-AGAATGATTTACTGC
1 TAAATTATA-AATGATTTATTAC
** *
7535409 TAAGCTAAAAATGATTTATTAC
1 TAAATTATAAATGATTTATTAC
**
7535431 TAAATTATTGATGATTTATT
1 TAAATTATAAATGATTTATT
7535451 TTTAAGTTAT
Statistics
Matches: 85, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
22 83 0.98
23 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (22 bp):
TAAATTATAAATGATTTATTAC
Found at i:7535460 original size:22 final size:22
Alignment explanation
Indices: 7535321--7535482 Score: 69
Period size: 22 Copynumber: 7.4 Consensus size: 22
7535311 AACTGACTAT
** * *
7535321 TAAATTATCAATGATATACTAC
1 TAAATTATTGATGATTTATTAC
** * *
7535343 TAAATTATAAATTATTTACTAC
1 TAAATTATTGATGATTTATTAC
*
7535365 TAAATTAGT-ATTGATTTATTAC
1 TAAATTATTGA-TGATTTATTAC
* * * *
7535387 TAATTTA-AGAATGATTTACTGC
1 TAAATTATTG-ATGATTTATTAC
** ***
7535409 TAAGCTAAAAATGATTTATTAC
1 TAAATTATTGATGATTTATTAC
**
7535431 TAAATTATTGATGATTTATTTT
1 TAAATTATTGATGATTTATTAC
* * *
7535453 TAAGTTATTGATTATTTGTTA-
1 TAAATTATTGATGATTTATTAC
7535474 TAAAATTAT
1 T-AAATTAT
7535483 AACCAATTTA
Statistics
Matches: 107, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
21 2 0.02
22 103 0.96
23 2 0.02
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (22 bp):
TAAATTATTGATGATTTATTAC
Found at i:7535759 original size:16 final size:15
Alignment explanation
Indices: 7535734--7535767 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
7535724 ATTATCCATA
*
7535734 ATTTACTATTAAGTT
1 ATTTACTATTAAATT
7535749 ATTTAACTATTAAATT
1 ATTT-ACTATTAAATT
7535765 ATT
1 ATT
7535768 GATATTTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.38, C:0.06, G:0.03, T:0.53
Consensus pattern (15 bp):
ATTTACTATTAAATT
Found at i:7535882 original size:22 final size:22
Alignment explanation
Indices: 7535812--7535896 Score: 66
Period size: 22 Copynumber: 3.8 Consensus size: 22
7535802 TTTTAAGTTT
*
7535812 TTAATGATTAACTACT-AGATTA
1 TTAA-GATTTACTACTAAGATTA
* *
7535834 TCATTGATTTACTACTAA-ATTA
1 TTA-AGATTTACTACTAAGATTA
*
7535856 TTTAAGATTTACTACTAAGTTTA
1 -TTAAGATTTACTACTAAGATTA
**
7535879 TTAATTTATTACTACTAA
1 TTAAGAT-TTACTACTAA
7535897 ACTGAAACTG
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
22 34 0.68
23 16 0.32
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.46
Consensus pattern (22 bp):
TTAAGATTTACTACTAAGATTA
Found at i:7535931 original size:21 final size:22
Alignment explanation
Indices: 7535907--7535953 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
7535897 ACTGAAACTG
7535907 ATTTGCTATTAAATTAT-ACTA
1 ATTTGCTATTAAATTATCACTA
* *
7535928 ATTTGCTATTAAGTTATCATTA
1 ATTTGCTATTAAATTATCACTA
7535950 ATTT
1 ATTT
7535954 ATTATTACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (22 bp):
ATTTGCTATTAAATTATCACTA
Found at i:7536309 original size:14 final size:14
Alignment explanation
Indices: 7536290--7536319 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7536280 ATAATTAAGT
*
7536290 TATCAATTATTTAC
1 TATCAATAATTTAC
7536304 TATCAATAATTTAC
1 TATCAATAATTTAC
7536318 TA
1 TA
7536320 CTAAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (14 bp):
TATCAATAATTTAC
Found at i:7536392 original size:21 final size:21
Alignment explanation
Indices: 7536349--7536392 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
7536339 TTAGCCATTG
7536349 AGTTATAAATGATTCATTATTA
1 AGTTATAAATGATTCA-TATTA
7536371 AGTTATAAATGATTTC-TATTA
1 AGTTATAAATGA-TTCATATTA
7536392 A
1 A
7536393 ATTGTTGGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.29
22 12 0.57
23 3 0.14
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (21 bp):
AGTTATAAATGATTCATATTA
Found at i:7536433 original size:27 final size:27
Alignment explanation
Indices: 7536403--7536454 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7536393 ATTGTTGGTG
*
7536403 ATTTACCACTAAGTTATTGATAATTTA
1 ATTTACCACTAAGTTATTAATAATTTA
* * *
7536430 ATTTACTATTAATTTATTAATAATT
1 ATTTACCACTAAGTTATTAATAATT
7536455 CACTAAAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.38, C:0.08, G:0.04, T:0.50
Consensus pattern (27 bp):
ATTTACCACTAAGTTATTAATAATTTA
Found at i:7536529 original size:22 final size:22
Alignment explanation
Indices: 7536474--7536530 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
7536464 GTTATCAATA
* *
7536474 ATTAACTAATTCACTACTAAATT
1 ATTAA-TAATTTACAACTAAATT
* * *
7536497 ATCACTGATTTACAACTAAATT
1 ATTAATAATTTACAACTAAATT
7536519 ATTAATAATTTA
1 ATTAATAATTTA
7536531 TGTTTATATT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
22 23 0.88
23 3 0.12
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.40
Consensus pattern (22 bp):
ATTAATAATTTACAACTAAATT
Found at i:7536846 original size:21 final size:22
Alignment explanation
Indices: 7536656--7536868 Score: 102
Period size: 22 Copynumber: 9.7 Consensus size: 22
7536646 TTTTTTATTT
* **
7536656 TTTACTATAAAATTATCACCGA
1 TTTACTATTAAATTATCATTGA
* * *
7536678 TTTACCACTAAATTATCTATAAT-T
1 TTTACTATTAAATTATC-AT--TGA
7536702 TTTA-TATTAAATTATACGA--GA
1 TTTACTATTAAATTAT-C-ATTGA
* **
7536723 TTTATTATTATTTTATCATTGA
1 TTTACTATTAAATTATCATTGA
* *
7536745 TTAACTATTATATTAT-ATATGA
1 TTTACTATTAAATTATCAT-TGA
* * *
7536767 TTTACTACTAAGTTCT-ATTGA
1 TTTACTATTAAATTATCATTGA
* * * * * *
7536788 TTTATTTTTAACTTTTCAATAA
1 TTTACTATTAAATTATCATTGA
*
7536810 TTAACTACTT-AATTATCAATT-A
1 TTTACTA-TTAAATTATC-ATTGA
7536832 TTTACTA-TAAATTATCATTGA
1 TTTACTATTAAATTATCATTGA
7536853 TTTACTATTAAATTAT
1 TTTACTATTAAATTAT
7536869 TTATATTTCC
Statistics
Matches: 142, Mismatches: 34, Indels: 30
0.69 0.17 0.15
Matches are distributed among these distances:
20 5 0.04
21 36 0.25
22 81 0.57
23 14 0.10
24 6 0.04
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.49
Consensus pattern (22 bp):
TTTACTATTAAATTATCATTGA
Found at i:7536876 original size:21 final size:20
Alignment explanation
Indices: 7536829--7536868 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7536819 TAATTATCAA
7536829 TTATTTACTATAAATTATCAT
1 TTATTTACTATAAATTAT-AT
*
7536850 TGATTTACTATTAAATTAT
1 TTATTTACTA-TAAATTAT
7536869 TTATATTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.53
Consensus pattern (20 bp):
TTATTTACTATAAATTATAT
Found at i:7536954 original size:22 final size:22
Alignment explanation
Indices: 7536923--7536989 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
7536913 TATTAGATTT
*
7536923 TTAATAATTTACTATTAAGTTA
1 TTAATAATTTACTACTAAGTTA
* * *
7536945 TTATTGATTTATTACTAAGTTA
1 TTAATAATTTACTACTAAGTTA
*
7536967 TTAATAATTAACTACTAAGTTA
1 TTAATAATTTACTACTAAGTTA
7536989 T
1 T
7536990 CACTTATTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.49
Consensus pattern (22 bp):
TTAATAATTTACTACTAAGTTA
Found at i:7537129 original size:21 final size:21
Alignment explanation
Indices: 7537105--7537155 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
7537095 ATTATTACTA
7537105 ATTTACTA-AAATGTTATCATT-
1 ATTTACTACAAA--TTATCATTC
*
7537126 ATTTATTACTAAATTATCATTC
1 ATTTACTAC-AAATTATCATTC
7537148 ATTTACTA
1 ATTTACTA
7537156 TTAAGTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
21 15 0.60
22 7 0.28
23 3 0.12
ACGTcount: A:0.37, C:0.12, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTTACTACAAATTATCATTC
Found at i:7537164 original size:22 final size:21
Alignment explanation
Indices: 7537117--7537164 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
7537107 TTACTAAAAT
*
7537117 GTTATCATTATTTATTACTAA
1 GTTATCATTATTTACTACTAA
* *
7537138 ATTATCATTCATTTACTATTAA
1 GTTATCATT-ATTTACTACTAA
7537160 GTTAT
1 GTTAT
7537165 ACTAATCACA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.52
Consensus pattern (21 bp):
GTTATCATTATTTACTACTAA
Found at i:7538076 original size:143 final size:143
Alignment explanation
Indices: 7537821--7538089 Score: 314
Period size: 142 Copynumber: 1.9 Consensus size: 143
7537811 TAAAAAATTT
* * *
7537821 CTTCTACTAAACGAAGAGATAGTATTTTTTTTAATTGTTGCTTCTTTCTTATTACCATCATTTAA
1 CTTCTACTAAACGAAAAGATAGTATTATTTTTAATTGTTGCTTCATTCTTATTACCATCATTTAA
* * * *
7537886 AATAACTTTTTTGATATTTTGATATCAAGTAACTTCGCATTTAGAAAGAGTAAAGAATATTTCGT
66 AATAACTTTTTTGATATTTAGATATCAAATAACTTCGCATTTAGAAAGACTAAAAAATATTTCGT
7537951 ATTTCCATAAAAA
131 ATTTCCATAAAAA
* * * * *
7537964 CTTCTACTAAAGGAAAATATGGTA-TATTTTTAATTTTTGTTTCATTCTTATTACCATCATTCT-
1 CTTCTACTAAACGAAAAGATAGTATTATTTTTAATTGTTGCTTCATTCTTATTACCATCATT-TA
* * * *
7538027 AATTAACTTTTTT-TTATATTAGATGT-AAATCAACTCCTC-CATTTGGAAAGACTAAAAAATAT
65 AAATAACTTTTTTGATAT-TTAGATATCAAAT-AACT--TCGCATTTAGAAAGACTAAAAAATAT
7538089 T
126 T
7538090 GTAAGGGGTC
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
141 6 0.06
142 55 0.52
143 42 0.40
144 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.43
Consensus pattern (143 bp):
CTTCTACTAAACGAAAAGATAGTATTATTTTTAATTGTTGCTTCATTCTTATTACCATCATTTAA
AATAACTTTTTTGATATTTAGATATCAAATAACTTCGCATTTAGAAAGACTAAAAAATATTTCGT
ATTTCCATAAAAA
Found at i:7539585 original size:32 final size:30
Alignment explanation
Indices: 7539548--7539618 Score: 81
Period size: 34 Copynumber: 2.3 Consensus size: 30
7539538 ATTGAAAACT
* *
7539548 TAATTTT-TTATTTAAAAAATTTTATTATACA
1 TAATTTTATTATATAAAAAATATTA--ATACA
7539579 TAAATTTTTATTATATAAAAAATATTAATACA
1 T-AA-TTTTATTATATAAAAAATATTAATACA
7539611 TAATTTTA
1 TAATTTTA
7539619 AAAATTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
30 5 0.14
31 3 0.09
32 8 0.23
33 4 0.11
34 15 0.43
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (30 bp):
TAATTTTATTATATAAAAAATATTAATACA
Found at i:7539952 original size:14 final size:14
Alignment explanation
Indices: 7539933--7539959 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7539923 GAGAGATAAA
7539933 TTAATACAATTGAT
1 TTAATACAATTGAT
7539947 TTAATACAATTGA
1 TTAATACAATTGA
7539960 AAAAGATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (14 bp):
TTAATACAATTGAT
Found at i:7543454 original size:15 final size:16
Alignment explanation
Indices: 7543436--7543479 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7543426 TAGCTTAAAG
*
7543436 TTTAATTTGTCA-TTT
1 TTTAATTTGTAATTTT
*
7543451 TTTAATTTTTAATTTT
1 TTTAATTTGTAATTTT
*
7543467 TTTAATTTATAAT
1 TTTAATTTGTAAT
7543480 ATCATATCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 10 0.40
16 15 0.60
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (16 bp):
TTTAATTTGTAATTTT
Found at i:7543469 original size:16 final size:16
Alignment explanation
Indices: 7543448--7543479 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7543438 TAATTTGTCA
*
7543448 TTTTTTAATTTTTAAT
1 TTTTTTAATTTATAAT
7543464 TTTTTTAATTTATAAT
1 TTTTTTAATTTATAAT
7543480 ATCATATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTTAATTTATAAT
Found at i:7548755 original size:14 final size:13
Alignment explanation
Indices: 7548726--7548767 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
7548716 ATTGTATGTG
7548726 AATATATTTATT-
1 AATATATTTATTA
*
7548738 TATATA-TTATTA
1 AATATATTTATTA
*
7548750 AATATATTTATTT
1 AATATATTTATTA
7548763 AATAT
1 AATAT
7548768 TCACAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
11 5 0.20
12 10 0.40
13 10 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
AATATATTTATTA
Found at i:7548775 original size:23 final size:24
Alignment explanation
Indices: 7548726--7548785 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 24
7548716 ATTGTATGTG
*
7548726 AATATATTTATTTATATATTATTA
1 AATATATTTATTTATATATTATCA
7548750 AATATATTTATTTA-ATATTCA-CA
1 AATATATTTATTTATATATT-ATCA
7548773 AATA-AGTTTATTT
1 AATATA-TTTATTT
7548786 GATTCCAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
22 1 0.03
23 17 0.52
24 15 0.45
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (24 bp):
AATATATTTATTTATATATTATCA
Found at i:7549664 original size:24 final size:26
Alignment explanation
Indices: 7549628--7549679 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
7549618 ATGTTCAATT
7549628 TATTAAGTAATTT-AT-TTTTTAGCA
1 TATTAAGTAATTTAATATTTTTAGCA
* * *
7549652 TATTAATTGATTTAATATTTTTATCA
1 TATTAAGTAATTTAATATTTTTAGCA
7549678 TA
1 TA
7549680 AATTACTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 11 0.48
25 2 0.09
26 10 0.43
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (26 bp):
TATTAAGTAATTTAATATTTTTAGCA
Found at i:7551629 original size:2 final size:2
Alignment explanation
Indices: 7551622--7551651 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7551612 TTTTCAACGA
7551622 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7551652 GTAAACTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7552390 original size:21 final size:21
Alignment explanation
Indices: 7552353--7552392 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7552343 ATACTTACAT
*
7552353 TATAAATTAATTATATTAATA
1 TATAAATTAAATATATTAATA
7552374 TATAAA-TAAATACTATTAA
1 TATAAATTAAATA-TATTAA
7552393 ATGAAACTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (21 bp):
TATAAATTAAATATATTAATA
Found at i:7552817 original size:1 final size:1
Alignment explanation
Indices: 7552811--7552850 Score: 80
Period size: 1 Copynumber: 40.0 Consensus size: 1
7552801 CAAATACTTG
7552811 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7552851 CTGCTCTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:7556988 original size:12 final size:11
Alignment explanation
Indices: 7556965--7557000 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7556955 AAATCAAGCA
7556965 ATCATGCAAAT
1 ATCATGCAAAT
7556976 ATCATGTCAAAT
1 ATCATG-CAAAT
*
7556988 ATCATGCGAAT
1 ATCATGCAAAT
7556999 AT
1 AT
7557001 ATTATAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.52
12 11 0.48
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.31
Consensus pattern (11 bp):
ATCATGCAAAT
Found at i:7557136 original size:18 final size:19
Alignment explanation
Indices: 7557115--7557185 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
7557105 ACAATCATAT
7557115 AAATATA-TAATATCATGC
1 AAATATATTAATATCATGC
7557133 AAATATATTAATTATCATGC
1 AAATATATTAA-TATCATGC
* *
7557153 -AATA-ATATAAAATGCCATCC
1 AAATATAT-TAATAT--CATGC
7557173 AAATATATTAATA
1 AAATATATTAATA
7557186 ACCATTCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
18 11 0.26
19 10 0.23
20 12 0.28
21 8 0.19
22 2 0.05
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34
Consensus pattern (19 bp):
AAATATATTAATATCATGC
Found at i:7557312 original size:24 final size:25
Alignment explanation
Indices: 7557285--7557340 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 25
7557275 TATCATTCAA
7557285 ATATAATATTA-ATCATGCAATAAC
1 ATATAATATTATATCATGCAATAAC
*
7557309 ATATAATATTATATCATGCAATAAT
1 ATATAATATTATATCATGCAATAAC
7557334 AT-TAATA
1 ATATAATA
7557341 ACTAAATAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 16 0.53
25 14 0.47
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.38
Consensus pattern (25 bp):
ATATAATATTATATCATGCAATAAC
Found at i:7557411 original size:28 final size:31
Alignment explanation
Indices: 7557380--7557443 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 31
7557370 ATAATCATAG
* *
7557380 AATCACACAAATA-A-ATTAATTAATTA-AT
1 AATCACACAAATAGACATCAATTAAATATAT
*
7557408 AATCATACAAATAGACATCAATTAAATATAT
1 AATCACACAAATAGACATCAATTAAATATAT
7557439 AATCA
1 AATCA
7557444 TGAAATTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 12 0.40
29 1 0.03
30 10 0.33
31 7 0.23
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.30
Consensus pattern (31 bp):
AATCACACAAATAGACATCAATTAAATATAT
Found at i:7557506 original size:21 final size:22
Alignment explanation
Indices: 7557473--7557514 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
7557463 CATGTAATTA
7557473 AATATATAATCATACAAATAAT
1 AATATATAATCATACAAATAAT
7557495 AATATA-AATCATACAAATAA
1 AATATATAATCATACAAATAA
7557515 ACATGCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.29
Consensus pattern (22 bp):
AATATATAATCATACAAATAAT
Found at i:7557575 original size:24 final size:22
Alignment explanation
Indices: 7557547--7557611 Score: 64
Period size: 21 Copynumber: 3.0 Consensus size: 22
7557537 ACAATTATGC
7557547 AATCACACAAATAAATAAATTAAT-
1 AATCACACAAAT-AAT--ATTAATA
**
7557571 AATCATGCAAAT-ATATTAATA
1 AATCACACAAATAATATTAATA
7557592 AATCACACAAAT-ATATTAAT
1 AATCACACAAATAATATTAAT
7557612 CATGCAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 6 0.17
21 18 0.50
22 2 0.06
24 10 0.28
ACGTcount: A:0.57, C:0.12, G:0.02, T:0.29
Consensus pattern (22 bp):
AATCACACAAATAATATTAATA
Found at i:7557588 original size:20 final size:20
Alignment explanation
Indices: 7557567--7557860 Score: 145
Period size: 20 Copynumber: 14.8 Consensus size: 20
7557557 ATAAATAAAT
*
7557567 TAATAATCATGCAAATATAT
1 TAATAATCATGCAAATATAA
**
7557587 TAATAAATCACACAAATAT-A
1 TAAT-AATCATGCAAATATAA
7557607 T--TAATCATGCAAATA-AA
1 TAATAATCATGCAAATATAA
*
7557624 T-AT--T-AAGCAAATATAA
1 TAATAATCATGCAAATATAA
*
7557640 TATTAATCATGCAAATATAA
1 TAATAATCATGCAAATATAA
* *
7557660 TATTAGTCATGCAAATTCATGCAA
1 TAATAATCATGCAAA-T-AT--AA
*
7557684 AAATAAAT-ATTGTGCAATAAATATAAA
1 TAAT-AATCA---TGC---AAATAT-AA
*
7557711 AAATAATCATGCAAATA-AA
1 TAATAATCATGCAAATATAA
* *
7557730 TTAATAATCATGCAAACATAT
1 -TAATAATCATGCAAATATAA
* *
7557751 TAATAGTCATGCAAATATAT
1 TAATAATCATGCAAATATAA
**
7557771 TAATAAATCACACAAATAT-A
1 TAAT-AATCATGCAAATATAA
7557791 T--TAATCATGC-AA-ATAA
1 TAATAATCATGCAAATATAA
* *
7557807 -AAT-ATTAAGCAAATATAA
1 TAATAATCATGCAAATATAA
* *
7557825 TATTAATCATACAAATATAA
1 TAATAATCATGCAAATATAA
* *
7557845 TATTAGTCATGCAAAT
1 TAATAATCATGCAAAT
7557861 TCATGCAAAA
Statistics
Matches: 212, Mismatches: 32, Indels: 60
0.70 0.11 0.20
Matches are distributed among these distances:
15 10 0.05
16 12 0.06
17 23 0.11
18 7 0.03
19 5 0.02
20 94 0.44
21 30 0.14
22 2 0.01
24 8 0.04
25 2 0.01
26 3 0.01
27 10 0.05
28 2 0.01
29 1 0.00
30 3 0.01
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.31
Consensus pattern (20 bp):
TAATAATCATGCAAATATAA
Found at i:7557602 original size:21 final size:20
Alignment explanation
Indices: 7557559--7557611 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
7557549 TCACACAAAT
* **
7557559 AAATAAATTAATAATCATGC
1 AAATATATTAATAATCACAC
7557579 AAATATATTAATAAATCACAC
1 AAATATATTAAT-AATCACAC
7557600 AAATATATTAAT
1 AAATATATTAAT
7557612 CATGCAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (20 bp):
AAATATATTAATAATCACAC
Found at i:7557745 original size:91 final size:90
Alignment explanation
Indices: 7557621--7557897 Score: 287
Period size: 91 Copynumber: 3.0 Consensus size: 90
7557611 TCATGCAAAT
*
7557621 AAATATTAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAA
1 AAATATCAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAA
*
7557686 ATAAATATTGTGCAATAAATATAAA
66 ATAAATATTGTGTAATAAATATAAA
* * * * * *
7557711 AAATAATCATGCAAATA-AATTAATAATCATGCAAACATATTAATAGTCATGCAAATAT-AT-TA
1 AAAT-ATCAAGCAAATATAA-TATTAATCATGCAAATATAATATTAGTCATGCAAAT-TCATGCA
* * *
7557773 ATAAATCACACAAATATAT-TAAT-CATGCA-AATA
63 A-AAAT-A-A-ATAT-TGTGTAATAAAT--ATAA-A
* *
7557806 AAATATTAAGCAAATATAATATTAATCATACAAATATAATATTAGTCATGCAAATTCATGCAAAA
1 AAATATCAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAA
*
7557871 ATAAATACTGTGTAATAAATATAAA
66 ATAAATATTGTGTAATAAATATAAA
7557896 AA
1 AA
7557898 TAAGAGTAAG
Statistics
Matches: 147, Mismatches: 23, Indels: 34
0.72 0.11 0.17
Matches are distributed among these distances:
90 14 0.10
91 56 0.38
92 5 0.03
93 5 0.03
94 55 0.37
95 12 0.08
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.30
Consensus pattern (90 bp):
AAATATCAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAA
ATAAATATTGTGTAATAAATATAAA
Found at i:7557763 original size:184 final size:185
Alignment explanation
Indices: 7557565--7557897 Score: 623
Period size: 185 Copynumber: 1.8 Consensus size: 185
7557555 AAATAAATAA
7557565 ATTAATAATCATGCAAATATATTAATAAATCACACAAATATATTAATCATGCAAAT-AAATATTA
1 ATTAATAATCATGCAAATATATTAATAAATCACACAAATATATTAATCATGCAAATAAAATATTA
* *
7557629 AGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATAT
66 AGCAAATATAATATTAATCATACAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATAC
7557694 TGTGCAATAAATATAAAAAATAATCATGCAAATAAATTAATAATCATGCAAACAT
131 TGTGCAATAAATATAAAAAATAATCATGCAAATAAATTAATAATCATGCAAACAT
*
7557749 ATTAATAGTCATGCAAATATATTAATAAATCACACAAATATATTAATCATGCAAATAAAATATTA
1 ATTAATAATCATGCAAATATATTAATAAATCACACAAATATATTAATCATGCAAATAAAATATTA
7557814 AGCAAATATAATATTAATCATACAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATAC
66 AGCAAATATAATATTAATCATACAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATAC
*
7557879 TGTGTAATAAATATAAAAA
131 TGTGCAATAAATATAAAAA
7557898 TAAGAGTAAG
Statistics
Matches: 144, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
184 55 0.38
185 89 0.62
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.31
Consensus pattern (185 bp):
ATTAATAATCATGCAAATATATTAATAAATCACACAAATATATTAATCATGCAAATAAAATATTA
AGCAAATATAATATTAATCATACAAATATAATATTAGTCATGCAAATTCATGCAAAAATAAATAC
TGTGCAATAAATATAAAAAATAATCATGCAAATAAATTAATAATCATGCAAACAT
Found at i:7557820 original size:16 final size:16
Alignment explanation
Indices: 7557799--7557830 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7557789 TATTAATCAT
7557799 GCAAATAAAATATTAA
1 GCAAATAAAATATTAA
*
7557815 GCAAATATAATATTAA
1 GCAAATAAAATATTAA
7557831 TCATACAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (16 bp):
GCAAATAAAATATTAA
Found at i:7557899 original size:94 final size:94
Alignment explanation
Indices: 7557617--7557900 Score: 291
Period size: 94 Copynumber: 3.1 Consensus size: 94
7557607 TTAATCATGC
7557617 AAAT-AAATATTAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATG
1 AAATAAAATATTAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATG
* *
7557681 CAAAAATAAATATTGTGCAATAAATATAA
66 CAAAAATAAATACTGTGTAATAAATATAA
* * * * *
7557710 AAA-ATAATCA-T--GCAAATA-AATTAATAATCATGCAAACATATTAATAGTCATGCAAA-T-A
1 AAATAAAAT-ATTAAGCAAATATAA-TATTAATCATGCAAATATAATATTAGTCATGCAAATTCA
** **** * **
7557768 T--ATTAATAAATCACACAAATATATTAATCATGC
64 TGCAAAAATAAAT-AC-TGTGTA-ATAAAT-ATAA
*
7557801 AAATAAAATATTAAGCAAATATAATATTAATCATACAAATATAATATTAGTCATGCAAATTCATG
1 AAATAAAATATTAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATG
7557866 CAAAAATAAATACTGTGTAATAAATATAA
66 CAAAAATAAATACTGTGTAATAAATATAA
7557895 AAATAA
1 AAATAA
7557901 GAGTAAGCAA
Statistics
Matches: 144, Mismatches: 31, Indels: 31
0.70 0.15 0.15
Matches are distributed among these distances:
87 8 0.06
88 1 0.01
89 3 0.02
90 8 0.06
91 44 0.31
92 5 0.03
93 7 0.05
94 46 0.32
95 8 0.06
96 4 0.03
97 2 0.01
98 8 0.06
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.30
Consensus pattern (94 bp):
AAATAAAATATTAAGCAAATATAATATTAATCATGCAAATATAATATTAGTCATGCAAATTCATG
CAAAAATAAATACTGTGTAATAAATATAA
Found at i:7558437 original size:22 final size:22
Alignment explanation
Indices: 7558412--7558453 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7558402 AAATCCTACA
* *
7558412 TTTTTCTTTCTATTTTTTACCT
1 TTTTTATTTCTATTTCTTACCT
*
7558434 TTTTTATTTTTATTTCTTAC
1 TTTTTATTTCTATTTCTTAC
7558454 AAATTGACTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTTATTTCTATTTCTTACCT
Found at i:7561918 original size:21 final size:22
Alignment explanation
Indices: 7561888--7561928 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7561878 AAACTAAGTG
7561888 TTTATCAAATC-AATCAAATAT
1 TTTATCAAATCGAATCAAATAT
* *
7561909 TTTATTAAATCGAATTAAAT
1 TTTATCAAATCGAATCAAAT
7561929 CAAATCGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (22 bp):
TTTATCAAATCGAATCAAATAT
Found at i:7564344 original size:19 final size:19
Alignment explanation
Indices: 7564299--7564345 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
7564289 ATTAAAAACA
*
7564299 AAAATATAACTAATAAATT
1 AAAATATAACTAAAAAATT
* *
7564318 ATACTATAAC-AAAAAATAT
1 AAAATATAACTAAAAAAT-T
7564337 AAAATATAA
1 AAAATATAA
7564346 TTTTAAATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAATATAACTAAAAAATT
Found at i:7567419 original size:59 final size:59
Alignment explanation
Indices: 7567342--7567739 Score: 445
Period size: 59 Copynumber: 6.7 Consensus size: 59
7567332 GTTTTTGTGC
* *
7567342 AAGAAAATTGATACTTTCAACTTTTCCCAAAAAAATATTCTTTTGAAACTTTAATTTCT
1 AAGAAAATTGATACTTTCAACTTTTCCCAAAAAAATATTTTTTTGAAACTTTAATTTTT
* ** *
7567401 -AGAAAATTTGATATTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAA-TTTTATTTTT
1 AAGAAAA-TTGATACTTTCAACTTTTCC-CAAAAAAATATTTTTTTGAAACTTTAATTTTT
* * * *
7567460 AAGAAAAATTGATCCTTTCAACTTTTCCC-CAAAAATATTTTTTTGAAACTTTGATTTTC
1 AAG-AAAATTGATACTTTCAACTTTTCCCAAAAAAATATTTTTTTGAAACTTTAATTTTT
** *
7567519 AAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAACCA-TTTTTTGAAAATTT-ATTTTT
1 AA-GAAAATTGATACTTTCAACTTTTCC-CAAAAAAATATTTTTTTGAAACTTTAATTTTT
* * * *
7567577 AAGAAAAATTGATACTTTCAACTTTTCTTCAAAAATATATTTTTTT-AAAATTTTATTTTT
1 AAG-AAAATTGATACTTTCAACTTTTC-CCAAAAAAATATTTTTTTGAAACTTTAATTTTT
* * * * *
7567637 AAAGAAAATTGATACTTTTAACTTTTTCCAAAAATAT-TTTTTTTGAAACTTTGATTTTG
1 -AAGAAAATTGATACTTTCAACTTTTCCCAAAAAAATATTTTTTTGAAACTTTAATTTTT
*
7567696 AAGGAAAATTGATACTTTCAACTTTTCCC-TAAAAATATTTTTTT
1 AA-GAAAATTGATACTTTCAACTTTTCCCAAAAAAATATTTTTTT
7567740 TATTTTTATT
Statistics
Matches: 290, Mismatches: 33, Indels: 32
0.82 0.09 0.09
Matches are distributed among these distances:
57 1 0.00
58 67 0.23
59 137 0.47
60 78 0.27
61 7 0.02
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (59 bp):
AAGAAAATTGATACTTTCAACTTTTCCCAAAAAAATATTTTTTTGAAACTTTAATTTTT
Found at i:7567478 original size:119 final size:117
Alignment explanation
Indices: 7567345--7567739 Score: 487
Period size: 119 Copynumber: 3.3 Consensus size: 117
7567335 TTTGTGCAAG
*
7567345 AAAATTGATACTTTCAACTTTTCCCAAAAAAATATTCTTTTGAAACTTTAATTTCTAGAAAATTT
1 AAAATTGATACTTTCAACTTTTCCC-AAAAAATATTTTTTTGAAACTTTAATTTCTAGAAAA-TT
*
7567410 GATATTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAATTTTATTTTTAAGA
64 GATATTTTCAACTTTTCCTCAAAAATATATTTTTTTGAAATTTTATTTTTAAGA
* * * *
7567464 AAAATTGATCCTTTCAACTTTTCCCCAAAAATATTTTTTTGAAACTTTGATTTTCAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGAAACTTT-AATTTCTA-GAAAATT
* ** *
7567529 GATACTTTCAACTTTTCCTCAAAAA-CCA-TTTTTTGAAAATTTATTTTTAAGA
64 GATATTTTCAACTTTTCCTCAAAAATATATTTTTTTGAAATTTTATTTTTAAGA
* * * *
7567581 AAAATTGATACTTTCAACTTTTCTTCAAAAATATATTTTTTT-AAAATTTTATTTTTAAAGAAAA
1 AAAATTGATACTTTCAACTTTTC-CCAAAAA-ATATTTTTTTGAAACTTTAATTTCT--AGAAAA
* * * *
7567645 TTGATACTTTT-AACTTTTTC-CAAAAATAT-TTTTTTTGAAACTTTGATTTTGAAGG
62 TTGATA-TTTTCAACTTTTCCTCAAAAATATATTTTTTTGAAA-TTTTATTTTTAAGA
*
7567700 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTT
7567740 TATTTTTATT
Statistics
Matches: 239, Mismatches: 27, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
117 64 0.27
118 67 0.28
119 103 0.43
120 5 0.02
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.46
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTGAAACTTTAATTTCTAGAAAATTGA
TATTTTCAACTTTTCCTCAAAAATATATTTTTTTGAAATTTTATTTTTAAGA
Found at i:7567647 original size:177 final size:178
Alignment explanation
Indices: 7567344--7567730 Score: 577
Period size: 177 Copynumber: 2.2 Consensus size: 178
7567334 TTTTGTGCAA
* * *
7567344 GAAAATTGATACTTTCAACTTTTCCCAAAAAAATATTCTTTTGAAACTTTAATTTCTAGAAAATT
1 GAAAATTGATACTTTCAACTTTTCCCAAAAAAACATTCTTTTGAAAATTTAATTTCTAGAAAAAT
* * * *
7567409 TGATATTTTCAACTTTTCCTCAAAAATTTATTTTTTTGAAATTTTATTTTTAAGAAAAATTGATC
66 TGATACTTTCAACTTTTCCTCAAAAATATATTTTTTTAAAATTTTATTTTTAAGAAAAATTGATA
7567474 CTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAACTTTGATTTTCAAG
131 CTTTCAACTTTT-CCCAAAAATATTTTTTTTGAAACTTTGATTTTCAAG
* *
7567522 GAAAATTGATACTTTCAACTTTTCCTC-AAAAACCATT-TTTTGAAAATTT-ATTTTTAAGAAAA
1 GAAAATTGATACTTTCAACTTTTCC-CAAAAAAACATTCTTTTGAAAATTTAATTTCT-AGAAAA
*
7567584 ATTGATACTTTCAACTTTTCTTCAAAAATATATTTTTTTAAAATTTTATTTTTAA-AGAAAATTG
64 ATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTTAAAATTTTATTTTTAAGA-AAAATTG
* * *
7567648 ATACTTTTAACTTTTTCCAAAAATATTTTTTTTGAAACTTTGATTTTGAAG
128 ATACTTTCAACTTTTCCCAAAAATATTTTTTTTGAAACTTTGATTTTCAAG
*
7567699 GAAAATTGATACTTTCAACTTTTCCCTAAAAA
1 GAAAATTGATACTTTCAACTTTTCCCAAAAAA
7567731 TATTTTTTTT
Statistics
Matches: 191, Mismatches: 13, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
176 16 0.08
177 141 0.74
178 33 0.17
179 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.45
Consensus pattern (178 bp):
GAAAATTGATACTTTCAACTTTTCCCAAAAAAACATTCTTTTGAAAATTTAATTTCTAGAAAAAT
TGATACTTTCAACTTTTCCTCAAAAATATATTTTTTTAAAATTTTATTTTTAAGAAAAATTGATA
CTTTCAACTTTTCCCAAAAATATTTTTTTTGAAACTTTGATTTTCAAG
Found at i:7567794 original size:17 final size:17
Alignment explanation
Indices: 7567750--7567806 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
7567740 TATTTTTATT
*
7567750 TAAAA-AAAATAGAATAA
1 TAAAACAAAA-AGAAAAA
* *
7567767 TAATAAAAAAAAGAAAAG
1 TAA-AACAAAAAGAAAAA
*
7567785 TAAAACAAAAATAAAAA
1 TAAAACAAAAAGAAAAA
7567802 TAAAA
1 TAAAA
7567807 TAAAGATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 19 0.58
18 10 0.30
19 4 0.12
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (17 bp):
TAAAACAAAAAGAAAAA
Found at i:7567815 original size:6 final size:5
Alignment explanation
Indices: 7567750--7567817 Score: 50
Period size: 6 Copynumber: 13.0 Consensus size: 5
7567740 TATTTTTATT
* * *
7567750 TAAAA -AAAA TAGAA TAATAA TAAAA -AAAA GAAAA GTAAAA CAAAAA
1 TAAAA TAAAA TAAAA TAA-AA TAAAA TAAAA TAAAA -TAAAA -TAAAA
7567796 TAAAAA TAAAA TAAAGA TAAAA
1 T-AAAA TAAAA TAAA-A TAAAA
7567818 AGAATATTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
4 8 0.16
5 20 0.39
6 23 0.45
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (5 bp):
TAAAA
Found at i:7567815 original size:11 final size:11
Alignment explanation
Indices: 7567754--7567817 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
7567744 TTTATTTAAA
*
7567754 AAAAATAGAAT
1 AAAAATAAAAT
*
7567765 AATAATAAAA-
1 AAAAATAAAAT
*
7567775 AAAAGA-AAAGT
1 AAAA-ATAAAAT
7567786 AAAACA-AAAAT
1 AAAA-ATAAAAT
7567797 AAAAATAAAAT
1 AAAAATAAAAT
*
7567808 AAAGATAAAA
1 AAAAATAAAA
7567818 AGAATATTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
10 7 0.16
11 36 0.84
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:7568808 original size:47 final size:45
Alignment explanation
Indices: 7568742--7568918 Score: 127
Period size: 44 Copynumber: 4.0 Consensus size: 45
7568732 TAAAAAAAAT
* *
7568742 TAAT-AGATAATTAGAAAAATAATAAT-A-AGATAAATCAACAATAATA
1 TAATAAGATAAATAAAAAAATAATAATAACAGATAAAT--A-AAT-ATA
*
7568788 TTATAAGATAAATAAAAAAATAATAATAACAGATAAATAAATATA
1 TAATAAGATAAATAAAAAAATAATAATAACAGATAAATAAATATA
* *
7568833 TAATTAGATAAAT-AAAAAATGAA-AATAA-AGAAAAAATAAA-ATA
1 TAATAAGATAAATAAAAAAAT-AATAATAACAG-ATAAATAAATATA
* * * * * * *
7568876 T-ATATATATATATTAATAAATAGTAATAATAAATAAATAAATA
1 TAATA-AGATAAATAAAAAAATAATAATAACAGATAAATAAATA
7568919 CATAGGATAT
Statistics
Matches: 108, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 13 0.12
44 39 0.36
45 18 0.17
46 6 0.06
47 21 0.19
48 1 0.01
49 8 0.07
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (45 bp):
TAATAAGATAAATAAAAAAATAATAATAACAGATAAATAAATATA
Found at i:7568809 original size:25 final size:24
Alignment explanation
Indices: 7568724--7568918 Score: 87
Period size: 22 Copynumber: 8.4 Consensus size: 24
7568714 AATAAAAATC
*
7568724 AGATAAAATAAAAAAA-ATTA-AT-
1 AGAT-AAATAAAAAAATAATATATA
* *
7568746 AGATAATTAGAAAAATAATA-ATA
1 AGATAAATAAAAAAATAATATATA
* *
7568769 AGATAAAT-CAACAATAATATTATA
1 AGATAAATAAAAAAATAATA-TATA
7568793 AGATAAATAAAAAAATAATA-ATAA
1 AGATAAATAAAAAAATAATATAT-A
* *
7568817 CAGATAAAT--AAATAT-ATA-ATT
1 -AGATAAATAAAAAAATAATATATA
*
7568838 AGATAAAT-AAAAAATGAAAATA-A
1 AGATAAATAAAAAAAT-AATATATA
*
7568861 AGA-AAA-AATAAAATATATATATA
1 AGATAAATAAAAAAATA-ATATATA
* * * *
7568884 TATATTAATAAATAGTAATAATAAATA
1 -AGATAAATAAA-A-AAATAATATATA
7568911 A-ATAAATA
1 AGATAAATA
7568919 CATAGGATAT
Statistics
Matches: 133, Mismatches: 21, Indels: 35
0.70 0.11 0.19
Matches are distributed among these distances:
20 8 0.06
21 15 0.11
22 36 0.27
23 20 0.15
24 15 0.11
25 25 0.19
26 3 0.02
27 7 0.05
28 4 0.03
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.27
Consensus pattern (24 bp):
AGATAAATAAAAAAATAATATATA
Found at i:7568829 original size:4 final size:4
Alignment explanation
Indices: 7568790--7568918 Score: 56
Period size: 4 Copynumber: 32.8 Consensus size: 4
7568780 CAATAATATT
* * * *
7568790 ATAA GATAA ATAA AAAA AT-A AT-A AT-A ACAG ATAA ATAA ATAT ATAA
1 ATAA -ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
* * * * * *
7568836 TTAG ATAA ATAA A-AA ATGAAA ATAA AGAA A-AA ATAA A-AT ATAT ATAT
1 ATAA ATAA ATAA ATAA AT--AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
* *
7568883 ATAT ATTA ATAA ATAGTA AT-A ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATA--A ATAA ATAA ATAA ATAA ATA
7568919 CATAGGATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
3 19 0.19
4 68 0.69
5 4 0.04
6 7 0.07
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:7568873 original size:16 final size:17
Alignment explanation
Indices: 7568840--7568875 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7568830 ATATAATTAG
*
7568840 ATAAATAAAAAATGAAA
1 ATAAAGAAAAAATGAAA
7568857 ATAAAGAAAAAAT-AAA
1 ATAAAGAAAAAATGAAA
7568873 ATA
1 ATA
7568876 TATATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (17 bp):
ATAAAGAAAAAATGAAA
Found at i:7568938 original size:25 final size:25
Alignment explanation
Indices: 7568910--7568966 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
7568900 AATAATAAAT
*
7568910 AAATAAATACATAGGATAT-AAAGAA
1 AAATAAATACATA-AATATAAAAGAA
* *
7568935 AAATATATACATAAATATAAAATAA
1 AAATAAATACATAAATATAAAAGAA
7568960 AAATAAA
1 AAATAAA
7568967 ATAAAAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.68, C:0.04, G:0.05, T:0.23
Consensus pattern (25 bp):
AAATAAATACATAAATATAAAAGAA
Found at i:7568962 original size:6 final size:6
Alignment explanation
Indices: 7568947--7568994 Score: 51
Period size: 7 Copynumber: 7.3 Consensus size: 6
7568937 ATATATACAT
*
7568947 AAATATA AAATAA AAATAA AATAAAA AGAATAA AAATATA AAATAA AA
1 AAATA-A AAATAA AAATAA AA-ATAA A-AATAA AAATA-A AAATAA AA
7568995 TTGGGTTTAC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
6 16 0.44
7 19 0.53
8 1 0.03
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:7569158 original size:11 final size:11
Alignment explanation
Indices: 7569142--7569167 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7569132 AACATTTTCA
7569142 TTTTTTTGTTT
1 TTTTTTTGTTT
7569153 TTTTTTTGTTT
1 TTTTTTTGTTT
7569164 TTTT
1 TTTT
7569168 GTTTTTTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:7569243 original size:43 final size:42
Alignment explanation
Indices: 7569182--7569328 Score: 179
Period size: 45 Copynumber: 3.4 Consensus size: 42
7569172 TTTGACCAAA
* *
7569182 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAACATAAATG
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAA-ATAAATT
* * *
7569225 GCTCCTCTAAATAGAGGCTCAACAACTTTAAAAAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCTCAACGACTTT---GAAAAAATAAATT
* * *
7569270 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATT
7569311 GCTCCTCTAAACAGAGGC
1 GCTCCTCTAAACAGAGGC
7569329 ACCATGACTT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
41 28 0.31
43 26 0.29
45 31 0.34
46 5 0.06
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATT
Found at i:7569321 original size:41 final size:41
Alignment explanation
Indices: 7569182--7569349 Score: 165
Period size: 41 Copynumber: 4.0 Consensus size: 41
7569172 TTTGACCAAA
* * *
7569182 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAACATAAATG
1 GCTCCTCTAAACAGAGGCACAACGACTTTG-AAAA-ATAAATT
* * * *
7569225 GCTCCTCTAAATAGAGGCTCAACAACTTTAAAAAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACAACGACTTT----GAAAAATAAATT
* *
7569270 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAAAAATAAATT
* * * *
7569311 GCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAA
1 GCTCCTCTAAACAGAGGCACAACGACTTTGAAAAATAAA
7569350 CAGAGGCACC
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 47 0.44
43 26 0.24
45 31 0.29
46 4 0.04
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACAACGACTTTGAAAAATAAATT
Found at i:7569358 original size:28 final size:28
Alignment explanation
Indices: 7569318--7569377 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 28
7569308 ATTGCTCCTC
*
7569318 TAAACAGAGGCACCATGACTTTGGAAAG
1 TAAACAGAGGCACCACGACTTTGGAAAG
*
7569346 TAAACAGAGGCACCACGACTTTTGAAAG
1 TAAACAGAGGCACCACGACTTTGGAAAG
7569374 TAAA
1 TAAA
7569378 TTGCTCCTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.42, C:0.18, G:0.22, T:0.18
Consensus pattern (28 bp):
TAAACAGAGGCACCACGACTTTGGAAAG
Found at i:7569388 original size:69 final size:69
Alignment explanation
Indices: 7569277--7569418 Score: 241
Period size: 69 Copynumber: 2.1 Consensus size: 69
7569267 ATTGCTCCTC
** *
7569277 TAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGG
1 TAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGA
7569342 AAAG
66 AAAG
7569346 TAAACAGAGGCACCACGACTTTTG-AAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
1 TAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
7569410 AAAAG
65 AAAAG
7569415 TAAA
1 TAAA
7569419 GTAAATTGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 65 0.94
70 4 0.06
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.20
Consensus pattern (69 bp):
TAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGA
AAAG
Found at i:7569408 original size:41 final size:42
Alignment explanation
Indices: 7569346--7569473 Score: 186
Period size: 46 Copynumber: 3.0 Consensus size: 42
7569336 CTTTGGAAAG
*
7569346 TAAACAGAGGCACCACGACTTTTG-AAAGTAAATTGCTCCTC
1 TAAACAGAGGCACCACGACTTTAGAAAAGTAAATTGCTCCTC
* *
7569387 TAAACAGAGGCACCACAACTTTGAAAAGTAAAGTAAATTGCTCCTC
1 TAAACAGAGGCACCACGACTTT----AGAAAAGTAAATTGCTCCTC
7569433 TAAACAGAGGCACCACGACTTTAGAAAAGTAAATTGCTCCT
1 TAAACAGAGGCACCACGACTTTAGAAAAGTAAATTGCTCCT
7569474 TGACAATCAT
Statistics
Matches: 78, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
41 21 0.27
42 18 0.23
45 1 0.01
46 38 0.49
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.23
Consensus pattern (42 bp):
TAAACAGAGGCACCACGACTTTAGAAAAGTAAATTGCTCCTC
Done.