Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 41 of 105
Found at i:7796605 original size:5 final size:5
Alignment explanation
Indices: 7796595--7796627 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
7796585 AAGATATATA
7796595 GGTTT GGTTT GGTTT GGTTT GGTTT GG-TT GGTT
1 GGTTT GGTTT GGTTT GGTTT GGTTT GGTTT GGTT
7796628 GATACTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.00, C:0.00, G:0.42, T:0.58
Consensus pattern (5 bp):
GGTTT
Found at i:7806218 original size:11 final size:12
Alignment explanation
Indices: 7806193--7806222 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
7806183 ATAATCACCT
7806193 AATCAATATCTA
1 AATCAATATCTA
7806205 AATCAATATC-A
1 AATCAATATCTA
7806216 AATCAAT
1 AATCAAT
7806223 TTAAGAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.44
12 10 0.56
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (12 bp):
AATCAATATCTA
Found at i:7807608 original size:21 final size:22
Alignment explanation
Indices: 7807584--7807628 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
7807574 TAACAATAAG
* *
7807584 TAAAAGTAT-ACAACTTAAATA
1 TAAAAGTATAAAAAATTAAATA
*
7807605 TAAAATTATAAAAAATTAAATA
1 TAAAAGTATAAAAAATTAAATA
7807627 TA
1 TA
7807629 TATTAAATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.31
Consensus pattern (22 bp):
TAAAAGTATAAAAAATTAAATA
Found at i:7808356 original size:21 final size:22
Alignment explanation
Indices: 7808318--7808373 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
7808308 ATGTATTTTT
**
7808318 TAATTTTTATTAAATTTATAT-A
1 TAATTTTTA-TATTTTTATATCA
7808340 TAATTTTTATATTTTTATATCA
1 TAATTTTTATATTTTTATATCA
*
7808362 T-ATTATTATATT
1 TAATTTTTATATT
7808374 ATATTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (22 bp):
TAATTTTTATATTTTTATATCA
Found at i:7809551 original size:21 final size:22
Alignment explanation
Indices: 7809522--7809562 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7809512 ATTCTATGCA
*
7809522 ATCATATAATCTAAAAAAATAT
1 ATCATATAAGCTAAAAAAATAT
*
7809544 ATCA-ATAAGCTAAACAAAT
1 ATCATATAAGCTAAAAAAAT
7809563 GTTGATGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (22 bp):
ATCATATAAGCTAAAAAAATAT
Found at i:7810436 original size:41 final size:41
Alignment explanation
Indices: 7810390--7810467 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
7810380 CTTTCTTTTC
* *
7810390 AAAGTAATAGCTTACACCAATTATTTTTTCTTTTCAAACAA
1 AAAGTAATAGCTTACACCAACTACTTTTTCTTTTCAAACAA
* * *
7810431 AAAGTAATAGTTTCCACCAACTCCTTTTTCTTTTCAA
1 AAAGTAATAGCTTACACCAACTACTTTTTCTTTTCAA
7810468 TGGAGTAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.35, C:0.21, G:0.05, T:0.40
Consensus pattern (41 bp):
AAAGTAATAGCTTACACCAACTACTTTTTCTTTTCAAACAA
Found at i:7810497 original size:38 final size:35
Alignment explanation
Indices: 7810369--7810497 Score: 105
Period size: 41 Copynumber: 3.4 Consensus size: 35
7810359 TTGAGCTTTA
* *
7810369 CACCAACTATTCTTTCTTTTCAAAGTAATAGCTTA
1 CACCAACTATTTTTTCTTTTCAAAGTAATAGCTTC
* *
7810404 CACCAATTATTTTTTCTTTTCAAACAAAAAGTAATAGTTTC
1 CACCAACTATTTTTTCTTTT----C--AAAGTAATAGCTTC
** * *
7810445 CACCAACTCCTTTTTCTTTTCAATGGAGTAATAACATC
1 CACCAACTATTTTTTCTTTTCAA---AGTAATAGCTTC
7810483 CACCAACTATTTTTT
1 CACCAACTATTTTTT
7810498 TTCTATTCAA
Statistics
Matches: 73, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
35 20 0.27
37 1 0.01
38 22 0.30
39 1 0.01
41 29 0.40
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.40
Consensus pattern (35 bp):
CACCAACTATTTTTTCTTTTCAAAGTAATAGCTTC
Found at i:7820910 original size:6 final size:6
Alignment explanation
Indices: 7820899--7820923 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7820889 ATCATATATG
7820899 TACATA TACATA TACATA TACATA T
1 TACATA TACATA TACATA TACATA T
7820924 GTGCATGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (6 bp):
TACATA
Found at i:7829262 original size:18 final size:18
Alignment explanation
Indices: 7829241--7829305 Score: 70
Period size: 18 Copynumber: 3.8 Consensus size: 18
7829231 GTATTCCTTA
7829241 ATTT-TTTTAAATTTTAAT
1 ATTTATTTT-AATTTTAAT
7829259 ATTTATTTTAATTTTAAT
1 ATTTATTTTAATTTTAAT
7829277 -TTTAATTTTAA-TTT-A-
1 ATTT-ATTTTAATTTTAAT
7829292 ATTTATTTT-ATTTT
1 ATTTATTTTAATTTT
7829306 TTTAAATGAT
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
14 1 0.02
15 8 0.19
16 4 0.09
17 6 0.14
18 20 0.47
19 4 0.09
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTATTTTAATTTTAAT
Found at i:7829268 original size:12 final size:11
Alignment explanation
Indices: 7829251--7829305 Score: 69
Period size: 12 Copynumber: 5.0 Consensus size: 11
7829241 ATTTTTTTAA
7829251 ATTTTAATATTT
1 ATTTTAAT-TTT
7829263 ATTTTAATTTT
1 ATTTTAATTTT
7829274 AATTTTAATTTT
1 -ATTTTAATTTT
*
7829286 AATTTAA-TTT
1 ATTTTAATTTT
7829296 ATTTT-ATTTT
1 ATTTTAATTTT
7829306 TTTAAATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
9 1 0.03
10 10 0.26
11 9 0.23
12 19 0.49
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
ATTTTAATTTT
Found at i:7829306 original size:6 final size:6
Alignment explanation
Indices: 7829238--7829295 Score: 70
Period size: 6 Copynumber: 10.2 Consensus size: 6
7829228 TTCGTATTCC
*
7829238 TTAATT TT--TT TAAATT TTAATAT TT-ATT TTAATT TTAATT TTAATT
1 TTAATT TTAATT TTAATT TTAAT-T TTAATT TTAATT TTAATT TTAATT
7829284 TTAA-T TTAATT T
1 TTAATT TTAATT T
7829296 ATTTTATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
4 3 0.07
5 8 0.18
6 31 0.69
7 3 0.07
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTAATT
Found at i:7829385 original size:60 final size:59
Alignment explanation
Indices: 7829321--7829461 Score: 187
Period size: 61 Copynumber: 2.3 Consensus size: 59
7829311 ATGATTTTCT
* *
7829321 AAAATAAAATTTTAAAAAAATATATTTTTGA-AGAAAAGTTGAAAGTATTAA-TTTTCTTTG
1 AAAATAAAATTTTAAAAAAA-ATATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTTC-TTA
*
7829381 AAAATAAAATTTTTTTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTA
1 AAAATAAAA--TTTTAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTA
7829442 AAAATAAAATTTCTAAAAAA
1 AAAATAAAATTT-TAAAAAA
7829462 TAAAAATTTC
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
59 3 0.04
60 15 0.21
61 38 0.53
62 16 0.22
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (59 bp):
AAAATAAAATTTTAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTA
Found at i:7829408 original size:16 final size:17
Alignment explanation
Indices: 7829370--7829410 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
7829360 TGAAAGTATT
7829370 AATTTTCTTTGAAAATAA
1 AATTTT-TTTGAAAATAA
7829388 AATTTTTTT-AAAA-AA
1 AATTTTTTTGAAAATAA
7829403 ATATTTTT
1 A-ATTTTT
7829411 GAGAAAAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 3 0.14
16 10 0.45
17 3 0.14
18 6 0.27
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
AATTTTTTTGAAAATAA
Found at i:7829460 original size:16 final size:17
Alignment explanation
Indices: 7829435--7829477 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
7829425 AGTATCAATT
*
7829435 TTTCTTAAAAAT-AAAA
1 TTTCTAAAAAATAAAAA
7829451 TTTCTAAAAAATAAAAA
1 TTTCTAAAAAATAAAAA
7829468 TTTCTAAAAA
1 TTTCTAAAAA
7829478 TATTTTTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
16 11 0.44
17 14 0.56
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (17 bp):
TTTCTAAAAAATAAAAA
Found at i:7829478 original size:16 final size:16
Alignment explanation
Indices: 7829435--7829479 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
7829425 AGTATCAATT
7829435 TTTCTTAAAAAT-AAAA
1 TTTC-TAAAAATAAAAA
7829451 TTTCTAAAAAATAAAAA
1 TTTCT-AAAAATAAAAA
7829468 TTTCTAAAAATA
1 TTTCTAAAAATA
7829480 TTTTTGGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.04
16 17 0.63
17 9 0.33
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.36
Consensus pattern (16 bp):
TTTCTAAAAATAAAAA
Found at i:7829606 original size:18 final size:18
Alignment explanation
Indices: 7829583--7829617 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7829573 TCATTATTCT
*
7829583 TTTTTTTGTTTTATTTTA
1 TTTTTTTCTTTTATTTTA
*
7829601 TTTTTTTCTTTTCTTTT
1 TTTTTTTCTTTTATTTT
7829618 TTTGAAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.86
Consensus pattern (18 bp):
TTTTTTTCTTTTATTTTA
Found at i:7839326 original size:12 final size:11
Alignment explanation
Indices: 7839301--7839348 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
7839291 ATGAACAAAT
7839301 AAAAAAT-AATA
1 AAAAAATGAA-A
*
7839312 AAAAAATGAGA
1 AAAAAATGAAA
7839323 AAAAAATGAAA
1 AAAAAATGAAA
7839334 AGAAAAATGAAA
1 A-AAAAATGAAA
7839346 AAA
1 AAA
7839349 TAAAAAAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 21 0.64
12 12 0.36
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (11 bp):
AAAAAATGAAA
Found at i:7839326 original size:21 final size:19
Alignment explanation
Indices: 7839301--7839355 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 19
7839291 ATGAACAAAT
7839301 AAAAAATAATAAAAAAATGAGA
1 AAAAAATAA-AAAAAAAT--GA
7839323 AAAAAATGAAAAGAAAAATG-
1 AAAAAAT-AAAA-AAAAATGA
7839343 AAAAAATAAAAAA
1 AAAAAATAAAAAA
7839356 GGAAGATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.06
19 4 0.13
20 7 0.23
21 1 0.03
22 9 0.29
23 8 0.26
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (19 bp):
AAAAAATAAAAAAAAATGA
Found at i:7840437 original size:45 final size:44
Alignment explanation
Indices: 7840359--7840843 Score: 365
Period size: 44 Copynumber: 11.2 Consensus size: 44
7840349 GATTGTCAAG
* * *
7840359 GAGCTTTGTTTA-TTTTTCAAAAGTTGTTAAGCCTCTGATTAGAA
1 GAGCTTTATTTATTTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAA
* *
7840403 GAGCTTTGTTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTA-AA
1 GAGCTTTATTTATTTTTTC-AAAGTTGTTGAGCCTCTGTTTAGAA
* *
7840447 GGAGCTTTATTTATTTTTTCAAAGTCGTTGAGCCTCTGTTTAGAG
1 -GAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
* * * *
7840492 GAGC--CATTTATTTTTTCAAAGTTGTGGTGCCTTTGTTTAGAA
1 GAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
* * * * *
7840534 GAGC--AATTTATTTTTTCAAAGTTTTTGAGCTTCTGCTTAGAG
1 GAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
* * * *
7840576 GAACTCTATTTATTTTTTCAAAGTTGTTGAGTCTTTGTTTA-AA
1 GAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
* * * *
7840619 GGAGCTTTGTTTATTTTTCCAAAGTCGTTGAGCCTTTTGTTTAGAA
1 -GAGCTTTATTTATTTTTTCAAAGTTGTTGAGCC-TCTGTTTAGAA
* * * * *
7840665 AAGC----TTTGTTTTTTCAAAGTCGTTAAGCCTTTGTTTA-AA
1 GAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
* * * * *
7840704 GGAGCTTAACTTTAATTTTTCCAAAGTCGTTCAGCCTCTGTTTAGAG
1 -GAGCTTTA-TTT-ATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
* * * **
7840751 GAGC--CATTTATTTTTCCAAA-TTCATTGAATCTCTGTTTAG-A
1 GAGCTTTATTTATTTTTTCAAAGTT-GTTGAGCCTCTGTTTAGAA
* * * *
7840792 GAAGCTTTGTTTATTTTTTCAAAGTCGTTGAGCTTCTATTTA-AA
1 G-AGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
7840836 GGAGCTTT
1 -GAGCTTT
7840844 TATCAAAATT
Statistics
Matches: 359, Mismatches: 59, Indels: 46
0.77 0.13 0.10
Matches are distributed among these distances:
39 2 0.01
40 11 0.03
41 24 0.07
42 96 0.27
43 4 0.01
44 126 0.35
45 63 0.18
46 32 0.09
47 1 0.00
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (44 bp):
GAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
Found at i:7840839 original size:86 final size:86
Alignment explanation
Indices: 7840411--7840840 Score: 406
Period size: 86 Copynumber: 5.0 Consensus size: 86
7840401 AAGAGCTTTG
* * * *
7840411 TTTATTTTTTCAAAAGTTGTTGAGCCTCTGATTAAAGGAGCTTTATTTATTTTTTCAAAGTCGTT
1 TTTATTTTTTC-AAAGTTGTTGAACCTTTGTTTAAAGAAGCTTTATTTATTTTTTCAAAGTCGTT
*
7840476 GAGCCTCTGTTTAGAGGAGCCA
65 GAGCTTCTGTTTAGAGGAGCCA
* ** * **
7840498 TTTATTTTTTCAAAGTTGTGGTGCCTTTGTTTAGAAG-AGC--AATTTATTTTTTCAAAGTTTTT
1 TTTATTTTTTCAAAGTTGTTGAACCTTTGTTTA-AAGAAGCTTTATTTATTTTTTCAAAGTCGTT
* *
7840560 GAGCTTCTGCTTAGAGGAACTCTA
65 GAGCTTCTGTTTAGAGGAGC-C-A
** * * *
7840584 TTTATTTTTTCAAAGTTGTTGAGTCTTTGTTTAAAGGAGCTTTGTTTATTTTTCCAAAGTCGTTG
1 TTTATTTTTTCAAAGTTGTTGAACCTTTGTTTAAAGAAGCTTTATTTATTTTTTCAAAGTCGTTG
* **
7840649 AGCCTTTTGTTTAGAAAAG-C-
66 AG-CTTCTGTTTAGAGGAGCCA
* * * * *
7840669 TTTGTTTTTTCAAAGTCGTT-AAGCCTTTGTTTAAAGGAGCTTAACTTTAATTTTTCCAAAGTCG
1 TTTATTTTTTCAAAGTTGTTGAA-CCTTTGTTTAAAGAAGCTTTA-TTT-ATTTTTTCAAAGTCG
* *
7840733 TTCAGCCTCTGTTTAGAGGAGCCA
63 TTGAGCTTCTGTTTAGAGGAGCCA
* * * * * *
7840757 TTTATTTTTCCAAA-TTCATTGAATCTCTGTTTAGAGAAGCTTTGTTTATTTTTTCAAAGTCGTT
1 TTTATTTTTTCAAAGTT-GTTGAACCTTTGTTTAAAGAAGCTTTATTTATTTTTTCAAAGTCGTT
* *
7840821 GAGCTTCTATTTAAAGGAGC
65 GAGCTTCTGTTTAGAGGAGC
7840841 TTTTATCAAA
Statistics
Matches: 280, Mismatches: 49, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
84 37 0.13
85 40 0.14
86 102 0.36
87 39 0.14
88 49 0.17
89 13 0.05
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (86 bp):
TTTATTTTTTCAAAGTTGTTGAACCTTTGTTTAAAGAAGCTTTATTTATTTTTTCAAAGTCGTTG
AGCTTCTGTTTAGAGGAGCCA
Found at i:7841083 original size:6 final size:6
Alignment explanation
Indices: 7841036--7841082 Score: 69
Period size: 6 Copynumber: 8.0 Consensus size: 6
7841026 AAGATAGGCC
* *
7841036 CATTTT CATTTT CATTTT CATTTT CATTTT TATTTT TATTTT -ATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
7841083 TTTTCTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
5 5 0.12
6 35 0.88
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (6 bp):
CATTTT
Found at i:7841239 original size:16 final size:17
Alignment explanation
Indices: 7841220--7841256 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7841210 TCAATTTTTC
7841220 AAAAAT-AAAATTTCTA
1 AAAAATAAAAATTTCTA
7841236 AAAAATAAAAATTTCTA
1 AAAAATAAAAATTTCTA
7841253 AAAA
1 AAAA
7841257 TATTTTTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAATAAAAATTTCTA
Found at i:7841257 original size:16 final size:16
Alignment explanation
Indices: 7841216--7841258 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
7841206 AGTATCAATT
7841216 TTTC-AAAAAT-AAAA
1 TTTCTAAAAATAAAAA
7841230 TTTCTAAAAAATAAAAA
1 TTTCT-AAAAATAAAAA
7841247 TTTCTAAAAATA
1 TTTCTAAAAATA
7841259 TTTTTGAGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.15
16 13 0.50
17 9 0.35
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (16 bp):
TTTCTAAAAATAAAAA
Found at i:7841319 original size:17 final size:17
Alignment explanation
Indices: 7841295--7841332 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
7841285 ATTTTCCTTT
7841295 AAAT-AAAATTTTTAAA
1 AAATAAAAATTTTTAAA
7841311 AAATAAAAATTTTTAAA
1 AAATAAAAATTTTTAAA
7841328 AAATA
1 AAATA
7841333 TTTTTGAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATAAAAATTTTTAAA
Found at i:7841389 original size:16 final size:17
Alignment explanation
Indices: 7841368--7841403 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7841358 AATGTTCCTT
*
7841368 AAAAAT-AAAATTTTTA
1 AAAAATAAAAATTTCTA
7841384 AAAAATAAAAATTTCTA
1 AAAAATAAAAATTTCTA
7841401 AAA
1 AAA
7841404 GATATTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAATAAAAATTTCTA
Found at i:7841409 original size:75 final size:75
Alignment explanation
Indices: 7841164--7841520 Score: 488
Period size: 75 Copynumber: 4.8 Consensus size: 75
7841154 TGATTTTCCT
* * * * * *
7841164 AAAATAAAATTTTCAAAAAAATTTTTTTAAGGAAAAGTTGAAAGTATCAATTTT--TCAAAAATA
1 AAAATAAAAATTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
7841227 AAATTTCTAA
66 AAATTTCTAA
* * *
7841237 AAAATAAAAATTTCT-AAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTT-TAAATA
1 AAAATAAAAATTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
*
7841300 AAATTTTTAA
66 AAATTTCTAA
* * *
7841310 AAAATAAAAATTTTTAAAAAATATTTTTGAGAAAAAATTGAAAGTATCAATGTTCCTTAAAAATA
1 AAAATAAAAATTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
*
7841375 AAATTTTTAA
66 AAATTTCTAA
* *
7841385 AAAATAAAAATTTCTAAAAGATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATA
1 AAAATAAAAATTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
7841450 AAATTTCTAA
66 AAATTTCTAA
* * * * * *
7841460 AAAATAAAAATTTTTAAAAGATATTTTTAAGAAAAAGTTAAAAATATCAATTTTTCTTAAA
1 AAAATAAAAATTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAA
7841521 GTAAAAATCT
Statistics
Matches: 256, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
72 35 0.14
73 41 0.16
74 39 0.15
75 141 0.55
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.37
Consensus pattern (75 bp):
AAAATAAAAATTTCTAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
AAATTTCTAA
Found at i:7841462 original size:16 final size:17
Alignment explanation
Indices: 7841437--7841478 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
7841427 AGTATCAATT
*
7841437 TTTCTTAAAAAT-AAAA
1 TTTCTAAAAAATAAAAA
7841453 TTTCTAAAAAATAAAAA
1 TTTCTAAAAAATAAAAA
*
7841470 TTTTTAAAA
1 TTTCTAAAA
7841479 GATATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
TTTCTAAAAAATAAAAA
Found at i:7842216 original size:50 final size:50
Alignment explanation
Indices: 7842159--7842257 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
7842149 AAATTAATCA
*
7842159 TTTTAAGATAGAACAAATCAATTATT-TTAGAACTCCCATTAAATATAAAG
1 TTTTAAGATAGAACAAATCAATT-TTCTTAGAACTCCCACTAAATATAAAG
*
7842209 TTTTAAGATAGAACAAATCAATTTTCTTAGAACTTCCACTAAATATAAA
1 TTTTAAGATAGAACAAATCAATTTTCTTAGAACTCCCACTAAATATAAA
7842258 TTACCAACAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
49 2 0.04
50 44 0.96
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.34
Consensus pattern (50 bp):
TTTTAAGATAGAACAAATCAATTTTCTTAGAACTCCCACTAAATATAAAG
Found at i:7852310 original size:13 final size:13
Alignment explanation
Indices: 7852290--7852326 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
7852280 ACAAATTGAT
7852290 CAAGGTTCATGAC
1 CAAGGTTCATGAC
* *
7852303 CGAGGTTCATGAT
1 CAAGGTTCATGAC
7852316 CAAGGTTCATG
1 CAAGGTTCATG
7852327 TAGATACCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (13 bp):
CAAGGTTCATGAC
Found at i:7856643 original size:16 final size:16
Alignment explanation
Indices: 7856622--7856652 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7856612 ATGAAGCCTG
7856622 CTTGCAATAGCTTGTA
1 CTTGCAATAGCTTGTA
7856638 CTTGCAATAGCTTGT
1 CTTGCAATAGCTTGT
7856653 CGACCTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (16 bp):
CTTGCAATAGCTTGTA
Found at i:7859334 original size:43 final size:43
Alignment explanation
Indices: 7859286--7859369 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
7859276 CTAGGTTAGG
*
7859286 TACTTTTAAGGCCTGTGGTGGGATTATAGTCTGTAACATTTAC
1 TACTTTTAAGGCCTATGGTGGGATTATAGTCTGTAACATTTAC
* *
7859329 TACTTTTAAGGCCTATGGTGGGGTTATAGTTTGTAACATTT
1 TACTTTTAAGGCCTATGGTGGGATTATAGTCTGTAACATTT
7859370 GTTTAAGATC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.23, C:0.12, G:0.24, T:0.42
Consensus pattern (43 bp):
TACTTTTAAGGCCTATGGTGGGATTATAGTCTGTAACATTTAC
Found at i:7861416 original size:40 final size:39
Alignment explanation
Indices: 7861332--7861466 Score: 104
Period size: 40 Copynumber: 3.5 Consensus size: 39
7861322 TATAATATTC
*
7861332 ATAAAAATAT--TATTTTTAATATAAATTAAATCTT-AACTA
1 ATAAAAATATAATATTTTT-AT-TAAATTAAATATTAAAC-A
7861371 TATAAAAATATAATATTTTTATTAAATTTAAATATTAAACA
1 -ATAAAAATATAATATTTTTATTAAA-TTAAATATTAAACA
** * * *
7861412 ATAAATTTATTAATATATTTA-TACATT-AA-ATTAAATA
1 ATAAAAATA-TAATATTTTTATTAAATTAAATATTAAACA
7861449 ATAAAAA-ATATATATTTT
1 ATAAAAATATA-ATATTTT
7861467 ATATATTTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
35 2 0.03
36 7 0.09
37 12 0.15
38 2 0.03
39 2 0.03
40 24 0.30
41 21 0.26
42 10 0.12
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (39 bp):
ATAAAAATATAATATTTTTATTAAATTAAATATTAAACA
Found at i:7870179 original size:17 final size:17
Alignment explanation
Indices: 7870153--7870196 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
7870143 CGATAAAAAT
7870153 GAAGAGAAAGA-AAGGG
1 GAAGAGAAAGAGAAGGG
7870169 GAAGTAGAAAGAGAAGGAG
1 GAAG-AGAAAGAGAAGG-G
*
7870188 AAAGAGAAA
1 GAAGAGAAA
7870197 AAAAAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 4 0.17
17 7 0.29
18 9 0.38
19 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.39, T:0.02
Consensus pattern (17 bp):
GAAGAGAAAGAGAAGGG
Found at i:7871022 original size:18 final size:19
Alignment explanation
Indices: 7870995--7871030 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7870985 TTCTTGGGTT
7870995 TCTTTAGCTTT-TGTGTTG
1 TCTTTAGCTTTGTGTGTTG
*
7871013 TCTTTTGCTTTGTGTGTT
1 TCTTTAGCTTTGTGTGTT
7871031 TGGTTTATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.03, C:0.11, G:0.22, T:0.64
Consensus pattern (19 bp):
TCTTTAGCTTTGTGTGTTG
Found at i:7871440 original size:22 final size:22
Alignment explanation
Indices: 7871415--7871456 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7871405 CAGATGTTAG
*
7871415 ATTTAATTGAATGATTAAATTC
1 ATTTAATTAAATGATTAAATTC
*
7871437 ATTTGATTAAATGATTAAAT
1 ATTTAATTAAATGATTAAAT
7871457 GATTAAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (22 bp):
ATTTAATTAAATGATTAAATTC
Found at i:7871453 original size:8 final size:8
Alignment explanation
Indices: 7871440--7871464 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7871430 TAAATTCATT
7871440 TGATTAAA
1 TGATTAAA
7871448 TGATTAAA
1 TGATTAAA
7871456 TGATTAAA
1 TGATTAAA
7871464 T
1 T
7871465 TCAAAGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (8 bp):
TGATTAAA
Found at i:7900946 original size:197 final size:197
Alignment explanation
Indices: 7900573--7900946 Score: 543
Period size: 197 Copynumber: 1.9 Consensus size: 197
7900563 CTATAATAGT
* * * * *
7900573 AATATTTTCTTTAAAATTAGATTTAATTACGTAAATGATCTCGATTACTATCTTGAAATAGTCAT
1 AATATGTTCTTTAAAATTAGATTTAATCACGTAAATGATCTCGATTACTACCTTGAAACAATCAT
* * * *
7900638 CCATTTGTTTCATTTAATTGATCAATATTATTATTCAAAAAACTACTAGAACCTTAATAAATAAA
66 CCATTTATTTCATTTAATTGACCAATAGTATGATTCAAAAAACTACTAGAACCTTAATAAATAAA
* * *
7900703 ATCAAATATTTATGTATATTTATCAAGAAATAGCACAGATAAAAAAAATAAAAAAAATCATCATT
131 ATCAAATATTTATGAATATTAATCAAGAAATAGCACAGAAAAAAAAAATAAAAAAAATCATCATT
7900768 AC
196 AC
* * *
7900770 AATATGTTCTTTAAAATTAGATTTAGTCACTTAAATGATCTCGATTACTACCTTGAAACAATTAT
1 AATATGTTCTTTAAAATTAGATTTAATCACGTAAATGATCTCGATTACTACCTTGAAACAATCAT
* * * *
7900835 CTATTTATTTCATTTGATTGACCAATAGTATGATTCAAAGAACTACTAGAATCTTAATATAATAA
66 CCATTTATTTCATTTAATTGACCAATAGTATGATTCAAAAAACTACTAGAACCTTAATA-AATAA
**
7900900 AATCAAATATTTATGAATATTAATCAAGAAATATTACA-AAAAAAAAA
130 AATCAAATATTTATGAATATTAATCAAGAAATAGCACAGAAAAAAAAA
7900947 CAAACCCATC
Statistics
Matches: 155, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
197 116 0.75
198 39 0.25
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (197 bp):
AATATGTTCTTTAAAATTAGATTTAATCACGTAAATGATCTCGATTACTACCTTGAAACAATCAT
CCATTTATTTCATTTAATTGACCAATAGTATGATTCAAAAAACTACTAGAACCTTAATAAATAAA
ATCAAATATTTATGAATATTAATCAAGAAATAGCACAGAAAAAAAAAATAAAAAAAATCATCATT
AC
Found at i:7908800 original size:15 final size:16
Alignment explanation
Indices: 7908775--7908808 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7908765 TTATTTAAGA
*
7908775 ATTTATATGTTTTGTT
1 ATTTATATGTTTTATT
7908791 ATTT-TATGTTTTATT
1 ATTTATATGTTTTATT
7908806 ATT
1 ATT
7908809 AAAGTGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.71
Consensus pattern (16 bp):
ATTTATATGTTTTATT
Found at i:7909496 original size:22 final size:22
Alignment explanation
Indices: 7909468--7909640 Score: 120
Period size: 22 Copynumber: 7.9 Consensus size: 22
7909458 GCACTGCCAC
*
7909468 TGATTTACTATTAAATTTTTAT
1 TGATTTACTATTAAATTATTAT
* *
7909490 TGATTTATTATTAATTTATTAAT
1 TGATTTACTATTAAATTATT-AT
** * * * *
7909513 T-ATTTGTTACTAAGTGATTAC
1 TGATTTACTATTAAATTATTAT
* *
7909534 TAATTTACTATTAAATTATTAA
1 TGATTTACTATTAAATTATTAT
7909556 TGATTTACTATTAAATTACTTA-
1 TGATTTACTATTAAATTA-TTAT
* ** * *
7909578 TAATTTGTTATAAAATTATAAT
1 TGATTTACTATTAAATTATTAT
*
7909600 TGATTTACTATTAATTTATTGA-
1 TGATTTACTATTAAATTATT-AT
*
7909622 TGATTGACTA-TAAAGTTAT
1 TGATTTACTATTAAA-TTAT
7909641 CAATGATTAA
Statistics
Matches: 117, Mismatches: 28, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
21 7 0.06
22 103 0.88
23 7 0.06
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (22 bp):
TGATTTACTATTAAATTATTAT
Found at i:7909500 original size:11 final size:11
Alignment explanation
Indices: 7909470--7909619 Score: 81
Period size: 11 Copynumber: 13.6 Consensus size: 11
7909460 ACTGCCACTG
*
7909470 ATTTACTATTAA
1 ATTTATTATT-A
*
7909482 ATTT-TTATTG
1 ATTTATTATTA
7909492 ATTTATTATTA
1 ATTTATTATTA
7909503 ATTTATTAATT-
1 ATTTATT-ATTA
* *
7909514 ATTTGTTACTA
1 ATTTATTATTA
* * *
7909525 AGTGATTACTA
1 ATTTATTATTA
*
7909536 ATTTACTATTA
1 ATTTATTATTA
* * *
7909547 AATTATTAATG
1 ATTTATTATTA
*
7909558 ATTTACTATTA
1 ATTTATTATTA
*
7909569 AATTACTTA-TA
1 ATTTA-TTATTA
* *
7909580 ATTTGTTATAA
1 ATTTATTATTA
* * *
7909591 AATTATAATTG
1 ATTTATTATTA
*
7909602 ATTTACTATTA
1 ATTTATTATTA
7909613 ATTTATT
1 ATTTATT
7909620 GATGATTGAC
Statistics
Matches: 98, Mismatches: 35, Indels: 11
0.68 0.24 0.08
Matches are distributed among these distances:
10 9 0.09
11 80 0.82
12 9 0.09
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (11 bp):
ATTTATTATTA
Found at i:7909582 original size:44 final size:44
Alignment explanation
Indices: 7909468--7909653 Score: 137
Period size: 44 Copynumber: 4.2 Consensus size: 44
7909458 GCACTGCCAC
* * * * *
7909468 TGATTTACTATTAAATTTTTATTGATTTATTATTAATTTATTAA
1 TGATTTACTATTAAATTATTACTAATTTACTATTAAATTATTAA
* ** * * *
7909512 TTATTTGTTACTAAGTGATTACTAATTTACTATTAAATTATTAA
1 TGATTTACTATTAAATTATTACTAATTTACTATTAAATTATTAA
** *
7909556 TGATTTACTATTAAATTACTTA-TAATTTGTTATAAAATTA-TAA
1 TGATTTACTATTAAATTA-TTACTAATTTACTATTAAATTATTAA
* * * *
7909599 TTGATTTACTATTAATTTATTGA-TGATTGACTA-TAAAGTTATCAA
1 -TGATTTACTATTAAATTATT-ACTAATTTACTATTAAA-TTATTAA
*
7909644 TGATTAACTA
1 TGATTTACTA
7909654 ATTTGTTATT
Statistics
Matches: 109, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
43 8 0.07
44 96 0.88
45 5 0.05
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (44 bp):
TGATTTACTATTAAATTATTACTAATTTACTATTAAATTATTAA
Found at i:7909584 original size:66 final size:66
Alignment explanation
Indices: 7909470--7909640 Score: 177
Period size: 66 Copynumber: 2.6 Consensus size: 66
7909460 ACTGCCACTG
* * * * * * *
7909470 ATTTACTATTAAATTTTTATTGATTTATTATTAATTTATTAATTATTTGTTACT-AAGTGATTAC
1 ATTTACTATTAAATTATTAATGATTTACTATTAAATTATTAATAATTTGTTA-TAAAATGATAAC
7909534 TA
65 TA
* *
7909536 ATTTACTATTAAATTATTAATGATTTACTATTAAATTACTT-ATAATTTGTTATAAAATTATAAT
1 ATTTACTATTAAATTATTAATGATTTACTATTAAATTA-TTAATAATTTGTTATAAAATGATAAC
*
7909600 TG
65 TA
* * *
7909602 ATTTACTATTAATTTATTGATGATTGACTA-TAAAGTTAT
1 ATTTACTATTAAATTATTAATGATTTACTATTAAA-TTAT
7909641 CAATGATTAA
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
65 6 0.07
66 81 0.91
67 2 0.02
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (66 bp):
ATTTACTATTAAATTATTAATGATTTACTATTAAATTATTAATAATTTGTTATAAAATGATAACT
A
Found at i:7909646 original size:22 final size:21
Alignment explanation
Indices: 7909540--7909653 Score: 57
Period size: 22 Copynumber: 5.2 Consensus size: 21
7909530 TTACTAATTT
* *
7909540 ACTATTAAATTATTAATGATTT
1 ACTATAAAATTA-TAATGATTA
* * * *
7909562 ACTATTAAATTACTTATAATTT
1 ACTATAAAATTA-TAATGATTA
** *
7909584 GTTATAAAATTATAATTGATTT
1 ACTATAAAATTATAA-TGATTA
* * * *
7909606 ACTATTAATTTATTGATGATTG
1 ACTATAAAATTA-TAATGATTA
*
7909628 ACTATAAAGTTATCAATGATTA
1 ACTATAAAATTAT-AATGATTA
7909650 ACTA
1 ACTA
7909654 ATTTGTTATT
Statistics
Matches: 71, Mismatches: 18, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
21 3 0.04
22 66 0.93
23 2 0.03
ACGTcount: A:0.40, C:0.06, G:0.07, T:0.46
Consensus pattern (21 bp):
ACTATAAAATTATAATGATTA
Found at i:7909682 original size:74 final size:74
Alignment explanation
Indices: 7909578--7909727 Score: 160
Period size: 74 Copynumber: 2.0 Consensus size: 74
7909568 AAATTACTTA
* * * * ** *
7909578 TAATTTGTTATAAAATTATAATTGATTTACTATTAATTTATTGATGATTGACTA-TAAAGTTATC
1 TAATTTGTTATAAAACTATAATTGACTTACTACTAAATTATCAATAATTGACTACTAAA-TTATC
*
7909642 AATGATTAAC
65 AATAATTAAC
* * *
7909652 TAATTTGTTATTAAACTATCACTTG-CTTACTACTAAATTATCAATAATTTACTACTAAATTATC
1 TAATTTGTTATAAAACTAT-AATTGACTTACTACTAAATTATCAATAATTGACTACTAAATTATC
*
7909716 AATAATTTAC
65 AATAATTAAC
7909726 TA
1 TA
7909728 TAATGTTATT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
74 54 0.87
75 8 0.13
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (74 bp):
TAATTTGTTATAAAACTATAATTGACTTACTACTAAATTATCAATAATTGACTACTAAATTATCA
ATAATTAAC
Found at i:7909736 original size:22 final size:22
Alignment explanation
Indices: 7909678--7909727 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
7909668 TATCACTTGC
7909678 TTACTACTAAATTATCAATAAT
1 TTACTACTAAATTATCAATAAT
7909700 TTACTACTAAATTATCAATAAT
1 TTACTACTAAATTATCAATAAT
7909722 TTACTA
1 TTACTA
7909728 TAATGTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (22 bp):
TTACTACTAAATTATCAATAAT
Found at i:7909902 original size:22 final size:22
Alignment explanation
Indices: 7909877--7910110 Score: 77
Period size: 22 Copynumber: 10.6 Consensus size: 22
7909867 CATAATTTAG
7909877 TATTAAGTTATCATTGATTAAC
1 TATTAAGTTATCATTGATTAAC
* *
7909899 TATTAAGCTATTGA-TGATTAATTAC
1 TATTAAGTTA-TCATTGATT-A--AC
* * * * *
7909924 CAGTAAGTTGT-ATTGATTTAT
1 TATTAAGTTATCATTGATTAAC
* * *
7909945 TTTTAAGTTCT-AATGATTAAC
1 TATTAAGTTATCATTGATTAAC
* * *
7909966 AATTAAATTATTATTGATTTAA-
1 TATTAAGTTATCATTGA-TTAAC
* * *
7909988 TACTAAATTTATCAATTAATT-AC
1 TA-TTAAGTTATC-ATTGATTAAC
* ** * *
7910011 TATTAAATTAAAACTGATTTAC
1 TATTAAGTTATCATTGATTAAC
* * *
7910033 TCTTAAGTTATCATTAATTTAC
1 TATTAAGTTATCATTGATTAAC
* * * *
7910055 TACTAAGTTATCATTAATTTAT
1 TATTAAGTTATCATTGATTAAC
*
7910077 TATTAAGTTATTAATT-ATTAAC
1 TATTAAGTTA-TCATTGATTAAC
*
7910099 TA-CAAGTTATCA
1 TATTAAGTTATCA
7910111 CTTTTTTTTA
Statistics
Matches: 154, Mismatches: 46, Indels: 26
0.68 0.20 0.12
Matches are distributed among these distances:
20 2 0.01
21 33 0.21
22 78 0.51
23 23 0.15
24 10 0.06
25 8 0.05
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (22 bp):
TATTAAGTTATCATTGATTAAC
Found at i:7910029 original size:67 final size:66
Alignment explanation
Indices: 7909958--7910082 Score: 144
Period size: 67 Copynumber: 1.9 Consensus size: 66
7909948 TAAGTTCTAA
* * *
7909958 TGATTAACAATTAAATTATTATTGATTTAATACTAAATTTATCAATTAA-TTACTATTAAATTAA
1 TGATTAACAATTAAATTATCATTAATTTAATACT-AAGTTATC-ATTAATTTACTATTAAATTAA
7910022 AAC
64 AAC
* ** * * *
7910025 TGATTTACTCTTAAGTTATCATTAATTTACTACTAAGTTATCATTAATTTATTATTAA
1 TGATTAACAATTAAATTATCATTAATTTAATACTAAGTTATCATTAATTTACTATTAA
7910083 GTTATTAATT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
65 5 0.10
66 16 0.33
67 27 0.56
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (66 bp):
TGATTAACAATTAAATTATCATTAATTTAATACTAAGTTATCATTAATTTACTATTAAATTAAAA
C
Found at i:7910075 original size:44 final size:43
Alignment explanation
Indices: 7910027--7910110 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 43
7910017 ATTAAAACTG
* * *
7910027 ATTTACTCTTAAGTTA-TCATTAATTTACTACTAAGTTATCATTA
1 ATTTACTATTAAGTTATTAATT-ATTAACTAC-AAGTTATCATTA
*
7910071 ATTTATTATTAAGTTATTAATTATTAACTACAAGTTATCA
1 ATTTACTATTAAGTTATTAATTATTAACTACAAGTTATCA
7910111 CTTTTTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 9 0.26
44 22 0.63
45 4 0.11
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.48
Consensus pattern (43 bp):
ATTTACTATTAAGTTATTAATTATTAACTACAAGTTATCATTA
Found at i:7910081 original size:11 final size:11
Alignment explanation
Indices: 7910035--7910089 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
7910025 TGATTTACTC
*
7910035 TTAAGTTATCA
1 TTAAGTTATTA
* *
7910046 TTAATTTACTA
1 TTAAGTTATTA
* *
7910057 CTAAGTTATCA
1 TTAAGTTATTA
*
7910068 TTAATTTATTA
1 TTAAGTTATTA
7910079 TTAAGTTATTA
1 TTAAGTTATTA
7910090 ATTATTAACT
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.36, C:0.07, G:0.05, T:0.51
Consensus pattern (11 bp):
TTAAGTTATTA
Found at i:7910372 original size:22 final size:22
Alignment explanation
Indices: 7910347--7910407 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
7910337 TAGTACCATT
7910347 AAGTTATTAATGATTTATTATA
1 AAGTTATTAATGATTTATTATA
*
7910369 AAGTTA-TAACTGATTTATTATT
1 AAGTTATTAA-TGATTTATTATA
* **
7910391 AATTTATCGATGATTTA
1 AAGTTATTAATGATTTA
7910408 CTAAAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 3 0.09
22 29 0.88
23 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (22 bp):
AAGTTATTAATGATTTATTATA
Found at i:7910432 original size:22 final size:22
Alignment explanation
Indices: 7910391--7910433 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7910381 ATTTATTATT
* *
7910391 AATTTATCGATGATTTACTAAA
1 AATTTATCAATGATTAACTAAA
*
7910413 AATTTATCAATGCTTAACTAA
1 AATTTATCAATGATTAACTAA
7910434 TTTACTACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.40
Consensus pattern (22 bp):
AATTTATCAATGATTAACTAAA
Found at i:7910514 original size:22 final size:22
Alignment explanation
Indices: 7910464--7910515 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
7910454 ATTTTTTATT
*
7910464 TAAGTTATTAGTAATTTACAAT
1 TAAGTTATTAGTAATTTACAAC
* * *
7910486 TACGTTATTAGTTATTTACCAC
1 TAAGTTATTAGTAATTTACAAC
7910508 TAAGTTAT
1 TAAGTTAT
7910516 CAATTTACAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.46
Consensus pattern (22 bp):
TAAGTTATTAGTAATTTACAAC
Found at i:7910523 original size:19 final size:19
Alignment explanation
Indices: 7910499--7910539 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
7910489 GTTATTAGTT
* *
7910499 ATTTACCACTAAGTTATCA
1 ATTTACAACTAAATTATCA
7910518 ATTTACAACTAAATTATCA
1 ATTTACAACTAAATTATCA
7910537 ATT
1 ATT
7910540 ATTTGCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (19 bp):
ATTTACAACTAAATTATCA
Found at i:7910622 original size:11 final size:11
Alignment explanation
Indices: 7910606--7910632 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7910596 GTTTTTAATT
7910606 ATTTATCACAA
1 ATTTATCACAA
7910617 ATTTATCACAA
1 ATTTATCACAA
7910628 ATTTA
1 ATTTA
7910633 CTACTAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (11 bp):
ATTTATCACAA
Found at i:7910696 original size:22 final size:23
Alignment explanation
Indices: 7910671--7910840 Score: 67
Period size: 22 Copynumber: 7.8 Consensus size: 23
7910661 AGTTATTACT
7910671 ATTTTA-TATTAAATTATGCA-TG
1 ATTTTACTATTAAATTAT-CATTG
*
7910693 A-TTTACTATTAAGTTATCATTG
1 ATTTTACTATTAAATTATCATTG
* * *
7910715 A-TTAATTATTATATTATCGA-T-
1 ATTTTACTATTAAATTATC-ATTG
* *
7910736 AATTTACTATTAAGTTAT-ATTG
1 ATTTTACTATTAAATTATCATTG
* * * * *
7910758 A-TTTACTTTTAAGTTTTTAATG
1 ATTTTACTATTAAATTATCATTG
* * *
7910780 A-ATAACTACTAAATTATCAATT-
1 ATTTTACTATTAAATTATC-ATTG
* * *
7910802 A-TTTACTACTAATTTATAATTG
1 ATTTTACTATTAAATTATCATTG
*
7910824 A-TTTACTACTAAATTAT
1 ATTTTACTATTAAATTAT
7910841 TTATTATTTA
Statistics
Matches: 114, Mismatches: 25, Indels: 18
0.73 0.16 0.11
Matches are distributed among these distances:
20 1 0.01
21 25 0.22
22 85 0.75
23 3 0.03
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (23 bp):
ATTTTACTATTAAATTATCATTG
Found at i:7910760 original size:65 final size:66
Alignment explanation
Indices: 7910691--7910840 Score: 167
Period size: 65 Copynumber: 2.3 Consensus size: 66
7910681 AAATTATGCA
* * * * * * *
7910691 TGATTTACTATTAAGTTATCATTGATTAATTATTATATTATCGATAATTTACTATTAAGTTAT-A
1 TGATTTACTATTAAGTTATCAATGAATAACTACTAAATTATCAATAATTTACTACTAAGTTATAA
7910755 T
66 T
* * * * *
7910756 TGATTTACTTTTAAGTTTTTAATGAATAACTACTAAATTATCAATTATTTACTACTAATTTATAA
1 TGATTTACTATTAAGTTATCAATGAATAACTACTAAATTATCAATAATTTACTACTAAGTTATAA
7910821 T
66 T
* *
7910822 TGATTTACTACTAAATTAT
1 TGATTTACTATTAAGTTAT
7910841 TTATTATTTA
Statistics
Matches: 68, Mismatches: 16, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
65 51 0.75
66 17 0.25
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (66 bp):
TGATTTACTATTAAGTTATCAATGAATAACTACTAAATTATCAATAATTTACTACTAAGTTATAA
T
Found at i:7910849 original size:22 final size:22
Alignment explanation
Indices: 7910784--7910872 Score: 101
Period size: 22 Copynumber: 4.0 Consensus size: 22
7910774 TTAATGAATA
*
7910784 ACTACTAAATTATCAATTATTT
1 ACTACTAAATTATTAATTATTT
*
7910806 ACTACTAATTTA-TAATTGATTT
1 ACTACTAAATTATTAATT-ATTT
*
7910828 ACTACTAAATTATTTATTATTT
1 ACTACTAAATTATTAATTATTT
7910850 ACTACAATAAATTAATT-ATTATT
1 ACTAC--TAAATT-ATTAATTATT
7910873 AAATTAAAAC
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.07
22 35 0.60
23 4 0.07
24 12 0.21
25 3 0.05
ACGTcount: A:0.40, C:0.10, G:0.01, T:0.48
Consensus pattern (22 bp):
ACTACTAAATTATTAATTATTT
Found at i:7910923 original size:22 final size:22
Alignment explanation
Indices: 7910865--7910990 Score: 81
Period size: 22 Copynumber: 5.7 Consensus size: 22
7910855 AATAAATTAA
* ** *
7910865 TTATTATTAAATTAAAACTGAT
1 TTATTATTAAGTTATCACTAAT
*
7910887 TTATTATTAAATTATCACTAAT
1 TTATTATTAAGTTATCACTAAT
* * *
7910909 TTACTATTAAGTTATCATTGAT
1 TTATTATTAAGTTATCACTAAT
** * *
7910931 TTATTGCTAAGTTATTAATAAT
1 TTATTATTAAGTTATCACTAAT
* * * * *
7910953 TAACTACTAGGTTATCACTTAT
1 TTATTATTAAGTTATCACTAAT
* *
7910975 TTTTTGTTAAGTTATC
1 TTATTATTAAGTTATC
7910991 CTTGATTTAG
Statistics
Matches: 78, Mismatches: 26, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 78 1.00
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (22 bp):
TTATTATTAAGTTATCACTAAT
Found at i:7910931 original size:44 final size:43
Alignment explanation
Indices: 7910673--7910935 Score: 136
Period size: 44 Copynumber: 6.1 Consensus size: 43
7910663 TTATTACTAT
* *
7910673 TTTA-TATTAAATTATGCATGATTTACTATTAAGTTATCATTGA
1 TTTATTATTAAATTAT-CATAATTTACTATTAAATTATCATTGA
* * *
7910716 TTAATTATTATATTATCGATAATTTACTATTAAGTTAT-ATTGA
1 TTTATTATTAAATTATC-ATAATTTACTATTAAATTATCATTGA
* * * * *
7910759 TTTACTT-TTAAGTTTTTAATGAA-TAACTACTAAATTATCAATT-A
1 TTTA-TTATTAA-ATTATCAT-AATTTACTATTAAATTATC-ATTGA
* * * * * *
7910803 TTTACTACTAATTTATAATTGATTTACTACTAAATTAT--TT-A
1 TTTATTATTAAATTATCA-TAATTTACTATTAAATTATCATTGA
* * * ** *
7910844 -TTATTTACTACAA-TA-AATTAA-TTATTATTAAATTAAAACTGA
1 TTTA-TTATTA-AATTATCA-TAATTTACTATTAAATTATCATTGA
*
7910886 TTTATTATTAAATTATCACTAATTTACTATTAAGTTATCATTGA
1 TTTATTATTAAATTATCA-TAATTTACTATTAAATTATCATTGA
7910930 TTTATT
1 TTTATT
7910936 GCTAAGTTAT
Statistics
Matches: 170, Mismatches: 31, Indels: 37
0.71 0.13 0.16
Matches are distributed among these distances:
39 12 0.07
40 8 0.05
41 13 0.08
42 9 0.05
43 44 0.26
44 81 0.48
45 3 0.02
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (43 bp):
TTTATTATTAAATTATCATAATTTACTATTAAATTATCATTGA
Found at i:7910953 original size:44 final size:44
Alignment explanation
Indices: 7910883--7910989 Score: 108
Period size: 44 Copynumber: 2.4 Consensus size: 44
7910873 AAATTAAAAC
* * *
7910883 TGATTTATTATTAAATTATCACTAATTTACTATTAAGTTATCAT
1 TGATTTATTATTAAGTTATTAATAATTTACTATTAAGTTATCAT
** * * *
7910927 TGATTTATTGCTAAGTTATTAATAATTAACTACTAGGTTATCACT
1 TGATTTATTATTAAGTTATTAATAATTTACTATTAAGTTATCA-T
* *
7910972 T-ATTTTTTGTTAAGTTAT
1 TGATTTATTATTAAGTTAT
7910990 CCTTGATTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 50 0.96
45 2 0.04
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.50
Consensus pattern (44 bp):
TGATTTATTATTAAGTTATTAATAATTTACTATTAAGTTATCAT
Found at i:7911042 original size:22 final size:21
Alignment explanation
Indices: 7910992--7911044 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 21
7910982 TAAGTTATCC
*
7910992 TTGATTTAGTAATATACTATTA
1 TTGATTTA-TAATATACTATAA
*
7911014 -TGCATTTATAATTATATTATAA
1 TTG-ATTTATAA-TATACTATAA
7911036 TTGATTTAT
1 TTGATTTAT
7911045 CAAAAAGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
21 5 0.19
22 19 0.73
23 2 0.08
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.53
Consensus pattern (21 bp):
TTGATTTATAATATACTATAA
Found at i:7911086 original size:43 final size:43
Alignment explanation
Indices: 7911009--7911095 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
7910999 AGTAATATAC
* *
7911009 TATTATGCATTTATAATTATATTATAATTGATTTA-TCAAAAAG
1 TATTATGCATTTATAATTATATTATAACTAATTTACT-AAAAAG
* * *
7911052 TATTATGCATTTATTATTGTATTATTACTAATTTACTAAAAAG
1 TATTATGCATTTATAATTATATTATAACTAATTTACTAAAAAG
7911095 T
1 T
7911096 TATCAACTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (43 bp):
TATTATGCATTTATAATTATATTATAACTAATTTACTAAAAAG
Found at i:7911098 original size:22 final size:22
Alignment explanation
Indices: 7911073--7911165 Score: 68
Period size: 22 Copynumber: 4.2 Consensus size: 22
7911063 TATTATTGTA
*
7911073 TTATTACTAATTTACTAAAAAG
1 TTATTACTAATTTACTATAAAG
* *
7911095 TTATCAACT-ATTGACTACTAAA-
1 TTAT-TACTAATTTACTA-TAAAG
* * *
7911117 TTATCT-TTCATTTACTATTAAG
1 TTAT-TACTAATTTACTATAAAG
7911139 TTATTACTAATTTACTACT-AAG
1 TTATTACTAATTTACTA-TAAAG
7911161 TTATT
1 TTATT
7911166 TATGATTACT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
21 5 0.09
22 44 0.79
23 7 0.12
ACGTcount: A:0.37, C:0.13, G:0.04, T:0.46
Consensus pattern (22 bp):
TTATTACTAATTTACTATAAAG
Found at i:7911130 original size:44 final size:44
Alignment explanation
Indices: 7911082--7911206 Score: 116
Period size: 44 Copynumber: 2.9 Consensus size: 44
7911072 ATTATTACTA
*
7911082 ATTTACTAAAAAGTTATCAACT-ATTGACTACTAAATTATCTT-TC
1 ATTTACTAATAAGTTATCAACTAATT-ACTACTAAATTAT-TTATC
* * * *
7911126 ATTTACTATTAAGTTAT-TACTAATTTACTACTAAGTTATTTATG
1 ATTTACTAATAAGTTATCAACTAA-TTACTACTAAATTATTTATC
* **
7911170 A-TTACTACTAAGTTATCAA-TGCTTACTACTAAATTAT
1 ATTTACTAATAAGTTATCAACTAATTACTACTAAATTAT
7911207 ACTAATTACA
Statistics
Matches: 67, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
42 14 0.21
43 20 0.30
44 31 0.46
45 2 0.03
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.44
Consensus pattern (44 bp):
ATTTACTAATAAGTTATCAACTAATTACTACTAAATTATTTATC
Found at i:7911176 original size:21 final size:21
Alignment explanation
Indices: 7911128--7911206 Score: 79
Period size: 21 Copynumber: 3.7 Consensus size: 21
7911118 TATCTTTCAT
* *
7911128 TTACTATTAAGTTA-TTACTAA
1 TTACTACTAAGTTATTTA-TGA
7911149 TTTACTACTAAGTTATTTATGA
1 -TTACTACTAAGTTATTTATGA
** *
7911171 TTACTACTAAGTTATCAATGC
1 TTACTACTAAGTTATTTATGA
*
7911192 TTACTACTAAATTAT
1 TTACTACTAAGTTAT
7911207 ACTAATTACA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
21 32 0.64
22 15 0.30
23 3 0.06
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
TTACTACTAAGTTATTTATGA
Found at i:7913492 original size:17 final size:16
Alignment explanation
Indices: 7913444--7913492 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
7913434 AAAGCTTAAT
7913444 TTTTTATT-TAAAAAA
1 TTTTTATTATAAAAAA
*
7913459 -TTTTATTATACATAAA
1 TTTTTATTATA-AAAAA
7913475 TTTTTATTATATAAAAA
1 TTTTTATTATA-AAAAA
7913492 T
1 T
7913493 ATTAAAAAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 7 0.25
15 2 0.07
16 4 0.14
17 15 0.54
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTTATTATAAAAAA
Found at i:7916007 original size:19 final size:19
Alignment explanation
Indices: 7915946--7916008 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
7915936 ACAAGTTACA
* *
7915946 AAAAATTATTACTAAAA-A
1 AAAAATTATTATTAAAATT
*
7915964 AATAAATTAATAATTAATTAATT
1 AA-AAATT-ATTATTAA--AATT
7915987 AAAAATTATTATTAAAATT
1 AAAAATTATTATTAAAATT
7916006 AAA
1 AAA
7916009 TTACAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
18 2 0.06
19 12 0.33
20 6 0.17
21 7 0.19
22 7 0.19
23 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATTATTATTAAAATT
Found at i:7917236 original size:26 final size:26
Alignment explanation
Indices: 7917206--7917262 Score: 84
Period size: 23 Copynumber: 2.3 Consensus size: 26
7917196 AGAAAAGTTG
*
7917206 GAAAAAGAGAAGGA-AAA-AAA-AAA
1 GAAAAAAAGAAGGAGAAAGAAAGAAA
7917229 GAAAAAAAGAAGGAGAAAGAAAGAAA
1 GAAAAAAAGAAGGAGAAAGAAAGAAA
7917255 GAAAAAAA
1 GAAAAAAA
7917263 ATACGGCGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 13 0.43
24 3 0.10
25 3 0.10
26 11 0.37
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (26 bp):
GAAAAAAAGAAGGAGAAAGAAAGAAA
Found at i:7917245 original size:14 final size:12
Alignment explanation
Indices: 7917206--7917262 Score: 62
Period size: 12 Copynumber: 4.7 Consensus size: 12
7917196 AGAAAAGTTG
* *
7917206 GAAAAAGAGAAG
1 GAAAAAAAGAAA
7917218 GAAAAAAA-AAA
1 GAAAAAAAGAAA
7917229 GAAAAAAAGAAGGA
1 GAAAAAAAGAA--A
*
7917243 GAAAGAAAGAAA
1 GAAAAAAAGAAA
7917255 GAAAAAAA
1 GAAAAAAA
7917263 ATACGGCGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
11 10 0.26
12 17 0.45
14 11 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
GAAAAAAAGAAA
Found at i:7918575 original size:20 final size:19
Alignment explanation
Indices: 7918534--7918576 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
7918524 TATATGTACT
* *
7918534 ATAAATATTGACTTTGAAA
1 ATAAATATGGACATTGAAA
*
7918553 ATAAATATGGATCATTGATA
1 ATAAATATGGA-CATTGAAA
7918573 ATAA
1 ATAA
7918577 GATTTTTGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.49, C:0.05, G:0.12, T:0.35
Consensus pattern (19 bp):
ATAAATATGGACATTGAAA
Found at i:7919653 original size:6 final size:6
Alignment explanation
Indices: 7919617--7919684 Score: 52
Period size: 6 Copynumber: 11.3 Consensus size: 6
7919607 TTCAATTTAA
*
7919617 AATAAGT AA-AAT AATAATT AA-ACAT AA-AAT AATAAT AATAAT ACTAAT
1 AATAA-T AATAAT AATAA-T AATA-AT AATAAT AATAAT AATAAT AATAAT
* * *
7919665 ATTAAT ATTAAT ATTAAT AA
1 AATAAT AATAAT AATAAT AA
7919685 CAAGTAAAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
5 7 0.13
6 41 0.76
7 6 0.11
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (6 bp):
AATAAT
Found at i:7920836 original size:65 final size:68
Alignment explanation
Indices: 7920702--7920837 Score: 154
Period size: 65 Copynumber: 2.0 Consensus size: 68
7920692 GAGGTGTGCC
* * *
7920702 AAAATGAAGATGACTGAGATCGAACCATGAGTAAAAAAACTAACATGATCTAGATTGAGTTGAGA
1 AAAATGAAGATGACTGAGATCGAACCAAGAGTAAAAAAACTAAAATGATCTAGACTGAGTTGAGA
7920767 TTG
66 TTG
*** * * *
7920770 AAAATG-A-ATGACTGAGATCGAACCACAG-GTTTGAAAA-TAAAATGATCTGGACTGGGTTGAT
1 AAAATGAAGATGACTGAGATCGAACCA-AGAGTAAAAAAACTAAAATGATCTAGACTGAGTTGAG
7920831 ATTG
65 ATTG
7920835 AAA
1 AAA
7920838 CGAGTAACCA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
65 26 0.45
66 24 0.41
67 2 0.03
68 6 0.10
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.24
Consensus pattern (68 bp):
AAAATGAAGATGACTGAGATCGAACCAAGAGTAAAAAAACTAAAATGATCTAGACTGAGTTGAGA
TTG
Found at i:7921046 original size:64 final size:64
Alignment explanation
Indices: 7920963--7921225 Score: 225
Period size: 64 Copynumber: 4.2 Consensus size: 64
7920953 ATCTGAGATT
* * * * *
7920963 AAAACAAGTGA-CCAGGATTGAATTGTAGGTTTGAAAATAAAATAACT-TGGACTGAGCTGTGAT
1 AAAACAAGTGATCGA-GATTGAATCGTAGGTCTAAAAATAAAATGA-TATGGACTGAGCTGTGAT
7921026 C
64 C
* **
7921027 AAAACAAGTGATCGAGATTGAA-CGTAGGTCAAAAAATAAAATGATATGGACTGAGCTAAGATC
1 AAAACAAGTGATCGAGATTGAATCGTAGGTCTAAAAATAAAATGATATGGACTGAGCTGTGATC
* * * * * * * * * *
7921090 AAAACGAGTGATTGGGATTGAATCATAGGTGTAAAAATAAAATGATCTAGATTGAACCGTGATC
1 AAAACAAGTGATCGAGATTGAATCGTAGGTCTAAAAATAAAATGATATGGACTGAGCTGTGATC
* * * * * * * *
7921154 AAAACAAATGATCAAGATTGAACCATGGGTC---AAA-AAAATGATTTGGACTGAGCCGAGATC
1 AAAACAAGTGATCGAGATTGAATCGTAGGTCTAAAAATAAAATGATATGGACTGAGCTGTGATC
7921214 AAAACAAGTGAT
1 AAAACAAGTGAT
7921226 TGGGATTAAA
Statistics
Matches: 161, Mismatches: 35, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
60 32 0.20
61 3 0.02
62 1 0.01
63 51 0.32
64 72 0.45
65 2 0.01
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.23
Consensus pattern (64 bp):
AAAACAAGTGATCGAGATTGAATCGTAGGTCTAAAAATAAAATGATATGGACTGAGCTGTGATC
Found at i:7921119 original size:127 final size:124
Alignment explanation
Indices: 7920958--7921232 Score: 302
Period size: 127 Copynumber: 2.2 Consensus size: 124
7920948 GATCAATCTG
* *** ** * * * * *
7920958 AGATTAAAACAAGTGACCAGGATTGAATTGTAGGTTTGAAAATAAAATAA-CTTGGACTGAGCTG
1 AGATCAAAACAAGTGATTGGGATTGAATCATAGGTGTAAAAATAAAATAATC-TAGACTGAACCG
* * * *
7921022 TGATCAAAACAAGTGATCGAGATTGAA-CGTAGGTCAAAAAATAAAATGATATGGACTGAGCTA
65 TGATCAAAACAAATGATCAAGATTGAACCATAGGTC---AAA-AAAATGATATGGACTGAGCCA
* * *
7921085 AGATCAAAACGAGTGATTGGGATTGAATCATAGGTGTAAAAATAAAATGATCTAGATTGAACCGT
1 AGATCAAAACAAGTGATTGGGATTGAATCATAGGTGTAAAAATAAAATAATCTAGACTGAACCGT
* * *
7921150 GATCAAAACAAATGATCAAGATTGAACCATGGGTCAAAAAAATGATTTGGACTGAGCCG
66 GATCAAAACAAATGATCAAGATTGAACCATAGGTCAAAAAAATGATATGGACTGAGCCA
7921209 AGATCAAAACAAGTGATTGGGATT
1 AGATCAAAACAAGTGATTGGGATT
7921233 AAACCACAAT
Statistics
Matches: 124, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
124 41 0.33
125 3 0.02
127 73 0.59
128 7 0.06
ACGTcount: A:0.42, C:0.11, G:0.23, T:0.24
Consensus pattern (124 bp):
AGATCAAAACAAGTGATTGGGATTGAATCATAGGTGTAAAAATAAAATAATCTAGACTGAACCGT
GATCAAAACAAATGATCAAGATTGAACCATAGGTCAAAAAAATGATATGGACTGAGCCA
Found at i:7921165 original size:30 final size:30
Alignment explanation
Indices: 7921129--7921225 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
7921119 TGTAAAAATA
7921129 AAATGATCTAGATTGAACCGTGATCAAAAC
1 AAATGATCTAGATTGAACCGTGATCAAAAC
* * *
7921159 AAATGATCAAGATTGAACCATGGGTCAAAA-
1 AAATGATCTAGATTGAACCGT-GATCAAAAC
* * * * *
7921189 AAATGATTTGGACTGAGCCGAGATCAAAAC
1 AAATGATCTAGATTGAACCGTGATCAAAAC
*
7921219 AAGTGAT
1 AAATGAT
7921226 TGGGATTAAA
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
29 7 0.13
30 39 0.74
31 7 0.13
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (30 bp):
AAATGATCTAGATTGAACCGTGATCAAAAC
Found at i:7921250 original size:124 final size:125
Alignment explanation
Indices: 7921021--7921265 Score: 298
Period size: 124 Copynumber: 2.0 Consensus size: 125
7921011 GGACTGAGCT
* * * *
7921021 GTGATCAAAACAAGTGATCGAGATTGAACGTAGGTCAAAAAATAAAATGATATGGACTGAGCTAA
1 GTGATCAAAACAAATGATCAAGATTGAACATAGGTC--AAAATAAAATGATATGGACTGAGCCAA
* * * * * **
7921086 GATCAAAACGAGTGATTGGGATTGAATCATAGGT-GTAAAAATAAAATGATCTAGATTGAACC
64 GATCAAAACAAGTGATTGGGATTAAACCACAAGTCAAAAAAATAAAAT-ATCTAGATTGAACC
* * *
7921148 GTGATCAAAACAAATGATCAAGATTGAACCATGGGTC-AAA-AAAATGATTTGGACTGAGCCGAG
1 GTGATCAAAACAAATGATCAAGATTGAA-CATAGGTCAAAATAAAATGATATGGACTGAGCCAAG
*
7921211 ATCAAAACAAGTGATTGGGATTAAACCACAATTCAAAAAAATAAAATATCTAGAT
65 ATCAAAACAAGTGATTGGGATTAAACCACAAGTCAAAAAAATAAAATATCTAGAT
7921266 CAAGTCGAGA
Statistics
Matches: 101, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
124 55 0.54
125 14 0.14
127 26 0.26
128 6 0.06
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (125 bp):
GTGATCAAAACAAATGATCAAGATTGAACATAGGTCAAAATAAAATGATATGGACTGAGCCAAGA
TCAAAACAAGTGATTGGGATTAAACCACAAGTCAAAAAAATAAAATATCTAGATTGAACC
Found at i:7921463 original size:18 final size:18
Alignment explanation
Indices: 7921426--7921469 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7921416 AATTTCACAA
* **
7921426 AAAATTTATAAAAATTTC
1 AAAATTCATAAAAAGGTC
7921444 AAAATTCATAAAAAGGTC
1 AAAATTCATAAAAAGGTC
*
7921462 AAGATTCA
1 AAAATTCA
7921470 CAAGGTTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.30
Consensus pattern (18 bp):
AAAATTCATAAAAAGGTC
Found at i:7921482 original size:18 final size:17
Alignment explanation
Indices: 7921461--7921501 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
7921451 ATAAAAAGGT
7921461 CAAGATTCACAAGGTTTG
1 CAAGATTC-CAAGGTTTG
*
7921479 CAAGCATTCCAAGTTTTG
1 CAAG-ATTCCAAGGTTTG
7921497 CAAGA
1 CAAGA
7921502 ATTTTTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 16 0.76
19 4 0.19
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (17 bp):
CAAGATTCCAAGGTTTG
Found at i:7925294 original size:57 final size:58
Alignment explanation
Indices: 7925230--7925742 Score: 701
Period size: 58 Copynumber: 8.9 Consensus size: 58
7925220 TTGTGTAGGG
* *
7925230 AAAATTGATACTTTCAACTTTTCCCCAAAAATA-TCTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* * *
7925287 AAAATTGATATTTTCAACTTTTCC-CTAAAATATTTTTTTGAAGATTTATTTTTAA-A
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* * *
7925343 GAAAATTGATACTTTCAACTTTTCCTCAAAATTTATTTTTTTGGAAACTTTAATTTTTAAGG
1 -AAAATTGATACTTTCAACTTTTCCTCAAAA-ATATTTTTTT-GAAAATTT-ATTTTTAAGA
* *
7925405 AAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAATTTATTTTTAAGA
* * *
7925464 AAAATTGATATTTTCAACTTTTTCTCAAAAATATTTTTTTGAAGATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
*
7925522 AAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAATTTTATTTTTAA-A
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAATTTATTTTTAAGA
*
7925580 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
* *
7925638 AAAATTGATACTTTCAACTTTTTCTCAAAAATCTTTTTTT-----TTTA-TTTT-AGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
*
7925689 GAAAATTGATACTTTCAACTTCT-CTCCAAAAATA-TTTTTTGAAAATTTATTTTT
1 -AAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTGAAAATTTATTTTT
7925743 TTAGATTTTT
Statistics
Matches: 410, Mismatches: 28, Indels: 36
0.86 0.06 0.08
Matches are distributed among these distances:
51 10 0.02
52 32 0.08
53 4 0.01
56 12 0.03
57 92 0.22
58 129 0.31
59 71 0.17
60 15 0.04
61 45 0.11
ACGTcount: A:0.35, C:0.11, G:0.06, T:0.48
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAAGA
Found at i:7925797 original size:6 final size:6
Alignment explanation
Indices: 7925788--7925846 Score: 66
Period size: 6 Copynumber: 9.7 Consensus size: 6
7925778 TAAAAGAAGA
**
7925788 AAAAAT AAAAAT AAAAAT AAAAAAGT AAAACC AAAAAT AAAAAT -AAAAT
1 AAAAAT AAAAAT AAAAAT -AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT
*
7925837 AAAGAT AAAA
1 AAAAAT AAAA
7925847 GAACATTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
5 5 0.11
6 29 0.66
7 9 0.20
8 1 0.02
ACGTcount: A:0.80, C:0.03, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:7926290 original size:11 final size:11
Alignment explanation
Indices: 7926274--7926314 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
7926264 ATCTGGGTTT
7926274 TTCGTCGAAAG
1 TTCGTCGAAAG
7926285 TTCGTCGAAAG
1 TTCGTCGAAAG
*
7926296 TTCATCGAAAG
1 TTCGTCGAAAG
*
7926307 TTGGTCGA
1 TTCGTCGA
7926315 TTTCTAGGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (11 bp):
TTCGTCGAAAG
Found at i:7927308 original size:42 final size:41
Alignment explanation
Indices: 7927135--7927397 Score: 319
Period size: 41 Copynumber: 6.3 Consensus size: 41
7927125 TTGATCAAAA
** * * *
7927135 CTCCTCTAAACAGAGGTTCAACGACTTTGAGAAACATAAATGG
1 CTCCTCTAAACAGAGGCACCACGACTTTGA-AAA-GTAAATTG
* * * *
7927178 CTCCTCTAATCAGAGGCTCAATGACTTTGAAAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTG
* *
7927219 CTCATCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTG
*
7927260 CTCCTCTAAACAGAGGCACCACGAGTTTTGAAAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGA-CTTTGAAAAGTAAATTG
* * *
7927302 CTCCTCTAAACAGAGGCACCCCAACTTTTGGAAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAATTG
* * *
7927344 CTCTTTTAAACAGAGGCACCACGACTTTGGAAAGTAAATTG
1 CTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTG
*
7927385 CTCATCTAAACAG
1 CTCCTCTAAACAG
7927398 TTGCTCGTCT
Statistics
Matches: 194, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
41 91 0.47
42 76 0.39
43 27 0.14
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (41 bp):
CTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTG
Found at i:7927403 original size:16 final size:16
Alignment explanation
Indices: 7927382--7927413 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7927372 GGAAAGTAAA
7927382 TTGCTCATCTAAACAG
1 TTGCTCATCTAAACAG
*
7927398 TTGCTCGTCTAAACAG
1 TTGCTCATCTAAACAG
7927414 AGGCACCACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (16 bp):
TTGCTCATCTAAACAG
Found at i:7927429 original size:57 final size:57
Alignment explanation
Indices: 7927341--7927454 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
7927331 GGAAAGTAAA
* * * *
7927341 TTGCTCTTTTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCATCTAAACAG
1 TTGCTCGTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCATCTAAACAG
*
7927398 TTGCTCGTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAG
1 TTGCTCGTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCATCTAAACAG
7927455 AGGCACCACG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (57 bp):
TTGCTCGTCTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCATCTAAACAG
Found at i:7927455 original size:41 final size:41
Alignment explanation
Indices: 7927398--7927570 Score: 274
Period size: 41 Copynumber: 4.2 Consensus size: 41
7927388 ATCTAAACAG
*
7927398 TTGCTCGTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
*
7927439 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAATTAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
* *
7927480 TTGCTCCCCTAAATAGAGGCACCACGACTTTGAGAAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGA-AAAATAAA
* * *
7927522 TTGCTCTTCTAAACAGAGGTACCACAACTTTGAAAAATAAA
1 TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
7927563 TTGCTCCT
1 TTGCTCCT
7927571 TGACAATCAT
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 85 0.71
42 35 0.29
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (41 bp):
TTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAATAAA
Found at i:7927469 original size:98 final size:99
Alignment explanation
Indices: 7927299--7927485 Score: 286
Period size: 98 Copynumber: 1.9 Consensus size: 99
7927289 GAAAAGTAAA
* * * * *
7927299 TTGCTCCTCTAAACAGAGGCACCCCAACTTTTGGAAAGTAAATTGCTCTTTTAAACAGAGGCACC
1 TTGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
*
7927364 ACGACTTTGGAAAGTAAATTGCTCATCTAAACAG
66 ACGACTTTGAAAAGTAAATTGCTCATCTAAACAG
* *
7927398 TTGCTCGTCTAAACAGAGGCACCACGAC-TTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 TTGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
*
7927462 ACGACTTTGAAAATTAAATTGCTC
66 ACGACTTTGAAAAGTAAATTGCTC
7927486 CCCTAAATAG
Statistics
Matches: 79, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
98 54 0.68
99 25 0.32
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.26
Consensus pattern (99 bp):
TTGCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
ACGACTTTGAAAAGTAAATTGCTCATCTAAACAG
Found at i:7927522 original size:140 final size:141
Alignment explanation
Indices: 7927257--7927537 Score: 422
Period size: 140 Copynumber: 2.0 Consensus size: 141
7927247 GGAAAGTAAA
* *
7927257 TTGCTCCTCTAAACAGAGGCACCACGAGTTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACC
1 TTGCTCCTCTAAACAGAGGCACCACGAGCTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
* * *** *
7927322 CCAACTTTTGGAAAGTAAATTGCTCTTTTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCT
66 ACAACTTTTGAAAAGTAAATTGCTCCCCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
7927387 CATCTAAACAG
131 CATCTAAACAG
*
7927398 TTGCTCGTCTAAACAGAGGCACCACGA-CTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
1 TTGCTCCTCTAAACAGAGGCACCACGAGCTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
* * *
7927462 ACGAC-TTTGAAAATTAAATTGCTCCCCTAAATAGAGGCACCACGACTTTGAGAAAATAAATTGC
66 ACAACTTTTGAAAAGTAAATTGCTCCCCTAAACAGAGGCACCACGACTTTG-GAAAATAAATTGC
*
7927526 TCTTCTAAACAG
130 TCATCTAAACAG
7927538 AGGTACCACA
Statistics
Matches: 126, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
139 39 0.31
140 61 0.48
141 26 0.21
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (141 bp):
TTGCTCCTCTAAACAGAGGCACCACGAGCTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACC
ACAACTTTTGAAAAGTAAATTGCTCCCCTAAACAGAGGCACCACGACTTTGGAAAATAAATTGCT
CATCTAAACAG
Found at i:7927546 original size:83 final size:82
Alignment explanation
Indices: 7927406--7927569 Score: 274
Period size: 83 Copynumber: 2.0 Consensus size: 82
7927396 AGTTGCTCGT
*
7927406 CTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTG
1 CTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
*
7927471 AAAATTAAATTGCTCCC
66 AAAAATAAATTGCTCCC
* * *
7927488 CTAAATAGAGGCACCACGACTTTGAGAAAATAAATTGCTCTTCTAAACAGAGGTACCACAACTTT
1 CTAAACAGAGGCACCACGACTTTGA-AAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTT
7927553 GAAAAATAAATTGCTCC
65 GAAAAATAAATTGCTCC
7927570 TTGACAATCA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 24 0.32
83 52 0.68
ACGTcount: A:0.39, C:0.23, G:0.15, T:0.23
Consensus pattern (82 bp):
CTAAACAGAGGCACCACGACTTTGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
AAAAATAAATTGCTCCC
Found at i:7928605 original size:8 final size:8
Alignment explanation
Indices: 7928591--7928665 Score: 88
Period size: 8 Copynumber: 9.8 Consensus size: 8
7928581 TTGAGTCCTC
7928591 TTTTTTCA
1 TTTTTTCA
*
7928599 CTTTTTC-
1 TTTTTTCA
7928606 TTTTTT--
1 TTTTTTCA
7928612 TTTTTTCA
1 TTTTTTCA
7928620 TTTTTTCA
1 TTTTTTCA
7928628 -TTTTTCA
1 TTTTTTCA
7928635 TTTTTTTCA
1 -TTTTTTCA
7928644 TTTTTTCA
1 TTTTTTCA
7928652 -TTTTTCA
1 TTTTTTCA
7928659 TATTTTT
1 T-TTTTT
7928666 AAGCATAGTA
Statistics
Matches: 59, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
6 6 0.10
7 19 0.32
8 22 0.37
9 12 0.20
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTCA
Found at i:7928609 original size:15 final size:15
Alignment explanation
Indices: 7928589--7928665 Score: 79
Period size: 15 Copynumber: 5.1 Consensus size: 15
7928579 CCTTGAGTCC
*
7928589 TCTTTTTTCACTTTT
1 TCTTTTTTCATTTTT
7928604 TCTTTTTT--TTTTT
1 TCTTTTTTCATTTTT
7928617 TCATTTTTTCA-TTTT
1 TC-TTTTTTCATTTTT
7928632 TCATTTTTTTCATTTTT
1 TC--TTTTTTCATTTTT
*
7928649 TCATTTTTCATATTTT
1 TCTTTTTTCAT-TTTT
7928665 T
1 T
7928666 AAGCATAGTA
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
13 6 0.11
14 6 0.11
15 22 0.42
16 13 0.25
17 6 0.11
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (15 bp):
TCTTTTTTCATTTTT
Found at i:7928643 original size:24 final size:24
Alignment explanation
Indices: 7928591--7928665 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
7928581 TTGAGTCCTC
*
7928591 TTTTTTCACTTTTTC-TTTTT--T
1 TTTTTTCATTTTTTCATTTTTCAT
7928612 TTTTTTCATTTTTTCATTTTTCAT
1 TTTTTTCATTTTTTCATTTTTCAT
7928636 TTTTTTCATTTTTTCATTTTTCAT
1 TTTTTTCATTTTTTCATTTTTCAT
*
7928660 ATTTTT
1 TTTTTT
7928666 AAGCATAGTA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
21 14 0.29
22 5 0.10
24 30 0.61
ACGTcount: A:0.11, C:0.12, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTTTTCATTTTTTCATTTTTCAT
Found at i:7933950 original size:20 final size:20
Alignment explanation
Indices: 7933925--7933962 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7933915 GTATAAAAAT
7933925 TATTTTAC-TCTAGATTTTCA
1 TATTTTACTTCT-GATTTTCA
7933945 TATTTTACTTCTGATTTT
1 TATTTTACTTCTGATTTT
7933963 TGAAATGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.21, C:0.13, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTTTACTTCTGATTTTCA
Found at i:7938315 original size:25 final size:24
Alignment explanation
Indices: 7938287--7938377 Score: 76
Period size: 25 Copynumber: 3.7 Consensus size: 24
7938277 TCAATTCAAG
*
7938287 GTTAGTAAATATCATGCAAATATAT
1 GTTA-TAAATATCATGCAAATAAAT
* *
7938312 GTTATAATTATTCATGCAAAAAAAT
1 GTTATAAATA-TCATGCAAATAAAT
* *
7938337 CATAATAAA-ATCATGCAAATAAAAT
1 -GTTATAAATATCATGCAAAT-AAAT
* *
7938362 ATTATAAAAATCATGC
1 GTTATAAATATCATGC
7938378 CAATTCATGC
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
24 21 0.39
25 28 0.52
26 5 0.09
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.32
Consensus pattern (24 bp):
GTTATAAATATCATGCAAATAAAT
Found at i:7938355 original size:24 final size:25
Alignment explanation
Indices: 7938323--7938377 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
7938313 TTATAATTAT
7938323 TCATGCAAA-AAAATCATAAT-AAAA
1 TCATGCAAATAAAAT-ATAATAAAAA
*
7938347 TCATGCAAATAAAATATTATAAAAA
1 TCATGCAAATAAAATATAATAAAAA
7938372 TCATGC
1 TCATGC
7938378 CAATTCATGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 13 0.46
25 15 0.54
ACGTcount: A:0.56, C:0.13, G:0.05, T:0.25
Consensus pattern (25 bp):
TCATGCAAATAAAATATAATAAAAA
Found at i:7938357 original size:14 final size:14
Alignment explanation
Indices: 7938323--7938361 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 14
7938313 TTATAATTAT
7938323 TCATGCAAA-AAAA
1 TCATGCAAATAAAA
7938336 TCAT---AATAAAA
1 TCATGCAAATAAAA
7938347 TCATGCAAATAAAA
1 TCATGCAAATAAAA
7938361 T
1 T
7938362 ATTATAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
10 2 0.09
11 8 0.36
13 4 0.18
14 8 0.36
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (14 bp):
TCATGCAAATAAAA
Found at i:7938466 original size:24 final size:25
Alignment explanation
Indices: 7938411--7938466 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
7938401 ATTATATATT
7938411 CATGC-AA-AAAATCAAAATAAAAG
1 CATGCAAATAAAATCAAAATAAAAG
7938434 CATGCAAATAAAATCATAAAT-AAA-
1 CATGCAAATAAAATCA-AAATAAAAG
7938458 CATGCAAAT
1 CATGCAAAT
7938467 TATAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
23 5 0.17
24 11 0.37
25 10 0.33
26 4 0.13
ACGTcount: A:0.61, C:0.14, G:0.07, T:0.18
Consensus pattern (25 bp):
CATGCAAATAAAATCAAAATAAAAG
Found at i:7938556 original size:16 final size:17
Alignment explanation
Indices: 7938543--7938590 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
7938533 AATTAAAAAT
7938543 AACAAAAC-TAAAAACA
1 AACAAAACATAAAAACA
*
7938559 AACAAAACATAAAATAAA
1 AACAAAACATAAAA-ACA
*
7938577 AATAAAA-ATAAAAA
1 AACAAAACATAAAAA
7938591 TAAAAGTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 9 0.32
17 11 0.39
18 8 0.29
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (17 bp):
AACAAAACATAAAAACA
Found at i:7938580 original size:6 final size:6
Alignment explanation
Indices: 7938569--7938595 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7938559 AACAAAACAT
7938569 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
7938596 GTGAAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:7939914 original size:43 final size:43
Alignment explanation
Indices: 7939851--7939949 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
7939841 CCTTAATAAA
*
7939851 GGCTTTGAAA-TTTTGGAAATTTAAAATGCTTCCT-TCACT-AGG
1 GGCTTTGAAACTTTTGAAAATTTAAAATGC-TCCTCTCA-TGAGG
*
7939893 GGCTTTGAAACTTTTGAAAATTTAAAATGCTCCTCTTATGAGG
1 GGCTTTGAAACTTTTGAAAATTTAAAATGCTCCTCTCATGAGG
*
7939936 GGTTTTGAAACTTT
1 GGCTTTGAAACTTT
7939950 CAAAAATGAA
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
42 15 0.29
43 36 0.71
ACGTcount: A:0.28, C:0.13, G:0.19, T:0.39
Consensus pattern (43 bp):
GGCTTTGAAACTTTTGAAAATTTAAAATGCTCCTCTCATGAGG
Found at i:7941652 original size:11 final size:11
Alignment explanation
Indices: 7941635--7941693 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
7941625 CTATCAATTT
7941635 TTTTTCTTTT-
1 TTTTTCTTTTC
7941645 TCTTTTCTTCTT-
1 T-TTTTCTT-TTC
*
7941657 TTTTTCATTTC
1 TTTTTCTTTTC
*
7941668 TTATTCTTTTC
1 TTTTTCTTTTC
* *
7941679 TTTATGTTTTC
1 TTTTTCTTTTC
7941690 TTTT
1 TTTT
7941694 CATTTTTGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
10 3 0.08
11 33 0.85
12 3 0.08
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:7941658 original size:22 final size:22
Alignment explanation
Indices: 7941633--7941675 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7941623 CCCTATCAAT
*
7941633 TTTTTTTCTTTTTCTT-TTCTTC
1 TTTTTTTC-ATTTCTTATTCTTC
7941655 TTTTTTTCATTTCTTATTCTT
1 TTTTTTTCATTTCTTATTCTT
7941676 TTCTTTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTTTTCATTTCTTATTCTTC
Found at i:7941662 original size:16 final size:16
Alignment explanation
Indices: 7941641--7941681 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
7941631 ATTTTTTTTC
*
7941641 TTTTTCTTTTCTTCTT
1 TTTTTCTTTTCTTATT
*
7941657 TTTTTCATTTCTTATT
1 TTTTTCTTTTCTTATT
*
7941673 CTTTTCTTT
1 TTTTTCTTT
7941682 ATGTTTTCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTTCTTATT
Found at i:7941688 original size:27 final size:27
Alignment explanation
Indices: 7941637--7941694 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
7941627 ATCAATTTTT
* *
7941637 TTTCTTTTTCTTTTCTTCTTTTTTTCA
1 TTTCTTATTCTTTTCTTCTTGTTTTCA
*
7941664 TTTCTTATTCTTTTCTT-TATGTTTTCT
1 TTTCTTATTCTTTTCTTCT-TGTTTTCA
7941691 TTTC
1 TTTC
7941695 ATTTTTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (27 bp):
TTTCTTATTCTTTTCTTCTTGTTTTCA
Found at i:7943625 original size:175 final size:175
Alignment explanation
Indices: 7943334--7943685 Score: 686
Period size: 175 Copynumber: 2.0 Consensus size: 175
7943324 TTCATCATGT
7943334 GCATTTGTAGCTATTTTATGATTGTACATTATGATATGTGATATGAGGCATTTAGTTCTATCATA
1 GCATTTGTAGCTATTTTATGATTGTACATTATGATATGTGATATGAGGCATTTAGTTCTATCATA
7943399 TTTTTTGAATTCAAGCACCTTTAATTTTGGTGAAATCACCACATTAGGAACTAAGTCTAGTCCAA
66 TTTTTTGAATTCAAGCACCTTTAATTTTGGTGAAATCACCACATTAGGAACTAAGTCTAGTCCAA
7943464 CAACATCCATTGATCCATAGAAATCTATCCCTTCAATAACTCTAA
131 CAACATCCATTGATCCATAGAAATCTATCCCTTCAATAACTCTAA
*
7943509 GCATTTGTAGTTATTTTATGATTGTACATTATGATATGTGATATGAGGCATTTAGTTCTATCATA
1 GCATTTGTAGCTATTTTATGATTGTACATTATGATATGTGATATGAGGCATTTAGTTCTATCATA
7943574 TTTTTTGAATTCAAGCACCTTTAATTTTGGTGAAATCACCACATTAGGAACTAAGTCTAGTCCAA
66 TTTTTTGAATTCAAGCACCTTTAATTTTGGTGAAATCACCACATTAGGAACTAAGTCTAGTCCAA
*
7943639 CAACATCCATTGATCCATAGAAATCTATCCCTTCAATAACTTTAA
131 CAACATCCATTGATCCATAGAAATCTATCCCTTCAATAACTCTAA
7943684 GC
1 GC
7943686 CTTTTTTTTT
Statistics
Matches: 175, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
175 175 1.00
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (175 bp):
GCATTTGTAGCTATTTTATGATTGTACATTATGATATGTGATATGAGGCATTTAGTTCTATCATA
TTTTTTGAATTCAAGCACCTTTAATTTTGGTGAAATCACCACATTAGGAACTAAGTCTAGTCCAA
CAACATCCATTGATCCATAGAAATCTATCCCTTCAATAACTCTAA
Found at i:7948471 original size:19 final size:19
Alignment explanation
Indices: 7948447--7948499 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 19
7948437 ATGCAAGGAT
*
7948447 ATCATGCAAAAATATTATA
1 ATCATGCAAAAATATAATA
* *
7948466 ATCATGTAAGAATA-AATA
1 ATCATGCAAAAATATAATA
*
7948484 A-CATGCAAATATATAA
1 ATCATGCAAAAATATAA
7948500 ATAAATCATC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
17 9 0.33
18 6 0.22
19 12 0.44
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (19 bp):
ATCATGCAAAAATATAATA
Found at i:7948625 original size:87 final size:86
Alignment explanation
Indices: 7948544--7948702 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 86
7948534 TAAAATCCAT
* ** *
7948544 ACAAAAATATCATACAAA-TAT-ATATTATAAT-TATTCATGCAAAAAATATCATAATAAAAGCA
1 ACAAAAAT-TCATACAAAGTATCAAACAATAATATATTCATGC-AAAAATATCAAAATAAAAGCA
7948606 TGCAAATAAAAATTATAAAAATC
64 TGCAAATAAAAATTATAAAAATC
* ** * *
7948629 ACACAAATTCATGTAAAGTATCAAACAATTATATATTCATGCAAAAATATTAAAATAAAAGCATG
1 ACAAAAATTCATACAAAGTATCAAACAATAATATATTCATGCAAAAATATCAAAATAAAAGCATG
7948694 CAAATAAAA
66 CAAATAAAA
7948703 TCATAAATAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
84 7 0.11
85 10 0.16
86 36 0.58
87 9 0.15
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (86 bp):
ACAAAAATTCATACAAAGTATCAAACAATAATATATTCATGCAAAAATATCAAAATAAAAGCATG
CAAATAAAAATTATAAAAATC
Found at i:7948698 original size:14 final size:13
Alignment explanation
Indices: 7948681--7948723 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
7948671 AAAAATATTA
7948681 AAATAAAAGCATGC
1 AAATAAAA-CATGC
7948695 AAATAAAATCAT--
1 AAATAAAA-CATGC
7948707 AAATAAAACATGC
1 AAATAAAACATGC
7948720 AAAT
1 AAAT
7948724 TATAAAATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 3 0.12
12 8 0.31
13 4 0.15
14 11 0.42
ACGTcount: A:0.63, C:0.12, G:0.07, T:0.19
Consensus pattern (13 bp):
AAATAAAACATGC
Found at i:7948824 original size:11 final size:11
Alignment explanation
Indices: 7948795--7948887 Score: 73
Period size: 11 Copynumber: 8.2 Consensus size: 11
7948785 AATTAAAAAT
7948795 AATAAAATTAAA
1 AATAAAA-TAAA
* *
7948807 AA-CAAACAAA
1 AATAAAATAAA
*
7948817 AATAAAACACAA
1 AATAAAATA-AA
7948829 AA-AAAATAAA
1 AATAAAATAAA
**
7948839 AACCAAATAAA
1 AATAAAATAAA
*
7948850 AATCAAATCAAA
1 AATAAAAT-AAA
7948862 AATAAAAATAAA
1 AAT-AAAATAAA
7948874 AATAGAAATAAA
1 AATA-AAATAAA
7948886 AA
1 AA
7948888 AATGGAAACC
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
10 9 0.13
11 28 0.41
12 27 0.40
13 4 0.06
ACGTcount: A:0.77, C:0.09, G:0.01, T:0.13
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:7948828 original size:17 final size:16
Alignment explanation
Indices: 7948795--7948875 Score: 85
Period size: 16 Copynumber: 4.9 Consensus size: 16
7948785 AATTAAAAAT
*
7948795 AATAAAATTAAAAACA
1 AATAAAAATAAAAACA
*
7948811 AACAAAAATAAAACACA
1 AATAAAAATAAAA-ACA
7948828 AA-AAAAATAAAAACCA
1 AATAAAAATAAAAA-CA
7948844 AATAAAAATCAAATCAA-A
1 AATAAAAAT-AAA--AACA
7948862 AATAAAAATAAAAA
1 AATAAAAATAAAAA
7948876 TAGAAATAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
15 3 0.05
16 25 0.44
17 14 0.25
18 13 0.23
20 2 0.04
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (16 bp):
AATAAAAATAAAAACA
Found at i:7948839 original size:6 final size:6
Alignment explanation
Indices: 7948830--7948887 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
7948820 AAAACACAAA
** *
7948830 AAAAAT AAAAA- CCAAAT AAAAAT -CAAAT CAAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT
*
7948877 AGAAAT AAAAA
1 AAAAAT AAAAA
7948888 AATGGAAACC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
5 7 0.17
6 30 0.73
7 4 0.10
ACGTcount: A:0.78, C:0.07, G:0.02, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:7950990 original size:263 final size:263
Alignment explanation
Indices: 7950507--7951029 Score: 823
Period size: 263 Copynumber: 2.0 Consensus size: 263
7950497 AAGTCAAATT
* * * **
7950507 AAATTAAACTAAGTACACTTTTGAGGTGAAATAAGGAAAATTATTAGGATTTGTGGTTAACAAGA
1 AAATTAAACTAAGTACACTTTTGAGGTGAAAAAAAGAAAATTATTAAGATTTACGGTTAACAAGA
* *
7950572 GACGAATTAAGGTAGATCCAAACAAAGTTCAAGCAAATTTAACTCCGTCACAAACACAAAAAGAA
66 GACGAATCAAGGTAGATCCAAACAAAGTTCAAGCAAACTTAACTCCGTCACAAACACAAAAAGAA
* * * *
7950637 GTAAGGAGTTTGTTAGGGAGATTCAATTACATTGCTCAATTTATATCTTAACTTACAGCAAAATG
131 GTAAGGAGTTTGTTAAGGAGATTAAATTACATTGCTCAATTCATATCTCAACTTACAGCAAAATG
* * *
7950702 TAATCCTATTTTCAAGTTACTTAAGAAGTATGATCCTAAAGAATGGAATAAAGAATGCTGGTATA
196 CAATCCTATCTTCAAGTTACTTAAGAAGTATGATCCTAAAGAATGAAATAAAGAATGCTGGTATA
7950767 AGG
261 AGG
*
7950770 AAATTAAACTAAGTACACTTTT-AGGGTGAAAAAAAGAAAGTTATTAAGATTTACGGTTAACAAG
1 AAATTAAACTAAGTACACTTTTGA-GGTGAAAAAAAGAAAATTATTAAGATTTACGGTTAACAAG
* * * * *
7950834 AGATGAATCAAGGTAGATTCAAACAAAGTTCAGGCAAACTTAACTCCGTTATAAACACAAAAAGA
65 AGACGAATCAAGGTAGATCCAAACAAAGTTCAAGCAAACTTAACTCCGTCACAAACACAAAAAGA
*
7950899 AGTAAGGAGTTTGTTAAGGAGATTAAATTACATTGCTCAATTCATATCTCAACTTATAGCAAAAT
130 AGTAAGGAGTTTGTTAAGGAGATTAAATTACATTGCTCAATTCATATCTCAACTTACAGCAAAAT
* *
7950964 GCAATCCTATCTTGAAGTTGCTTAAGAAGTATGATCCTAAAGAATGAAATAAAGAATGCTGGTAT
195 GCAATCCTATCTTCAAGTTACTTAAGAAGTATGATCCTAAAGAATGAAATAAAGAATGCTGGTAT
7951029 A
260 A
7951030 GGTTCGACAA
Statistics
Matches: 236, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
262 1 0.00
263 235 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (263 bp):
AAATTAAACTAAGTACACTTTTGAGGTGAAAAAAAGAAAATTATTAAGATTTACGGTTAACAAGA
GACGAATCAAGGTAGATCCAAACAAAGTTCAAGCAAACTTAACTCCGTCACAAACACAAAAAGAA
GTAAGGAGTTTGTTAAGGAGATTAAATTACATTGCTCAATTCATATCTCAACTTACAGCAAAATG
CAATCCTATCTTCAAGTTACTTAAGAAGTATGATCCTAAAGAATGAAATAAAGAATGCTGGTATA
AGG
Found at i:7954728 original size:49 final size:48
Alignment explanation
Indices: 7954578--7954847 Score: 271
Period size: 48 Copynumber: 5.5 Consensus size: 48
7954568 TTTCGTAGGG
* *
7954578 CTATTTTCATAGGAG-CCTTTCCAAA-AATATATTTTTTAAGTTCATTGC
1 CTATTTTCATAGGAGCCCTTTTCAAATAA-AT-TTTTTAAAGTTCATTGC
* * * *
7954626 CTATTTTCATAGAAACCCTTTTCAAATAAATTTTTTAAATTTCGTTGC
1 CTATTTTCATAGGAGCCCTTTTCAAATAAATTTTTTAAAGTTCATTGC
* * * *
7954674 CTATTTTTATAGGAGCCTTTTTCAAACAAATTTTTTAAAAGTTCGTTGC
1 CTATTTTCATAGGAGCCCTTTTCAAATAAATTTTTT-AAAGTTCATTGC
* * * *
7954723 CTATTTTTATAGGA-CCCTTTTCAGATAATTTGTTTTTTAAAATTCATTGC
1 CTATTTTCATAGGAGCCCTTTTCAAATAA---ATTTTTTAAAGTTCATTGC
* * *
7954773 CTACTTTT-ATAGGAGTCCTTTTCAAATAAAGATTTTTAAAGTTCATTAC
1 CTA-TTTTCATAGGAGCCCTTTTCAAATAAA-TTTTTTAAAGTTCATTGC
7954822 CT-TTGTTCATAGGAGCCCTTTTCAAA
1 CTATT-TTCATAGGAGCCCTTTTCAAA
7954848 ATTGATTTTT
Statistics
Matches: 186, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
47 2 0.01
48 71 0.38
49 70 0.38
50 21 0.11
51 22 0.12
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (48 bp):
CTATTTTCATAGGAGCCCTTTTCAAATAAATTTTTTAAAGTTCATTGC
Found at i:7954787 original size:99 final size:94
Alignment explanation
Indices: 7954581--7954860 Score: 289
Period size: 99 Copynumber: 2.9 Consensus size: 94
7954571 CGTAGGGCTA
* * *
7954581 TTTTCATAGGAGCCTTTCCAAAAATATATTTTTTAAGTTCATTGCCTATTTTCATAGAAACCCTT
1 TTTT-ATAGGAGCCTTTTCAAAAA-AT-TTTTTAAAGTTCATTGCCTATTTTCATAG-GACCCTT
* * * *
7954646 TTCAAATAA--ATTTTTTAAATTTCGTTGCCTAT
62 TTC-AATAATTGTTTTTTAAAATTCATTGCCTAC
* *
7954678 TTTTATAGGAGCCTTTTTCAAACAAATTTTTTAAAAGTTCGTTGCCTATTTTTATAGGACCCTTT
1 TTTTATAGGAGCC-TTTTCAAA-AAATTTTTT-AAAGTTCATTGCCTATTTTCATAGGACCCTTT
7954743 TCAGATAATTTGTTTTTTAAAATTCATTGCCTAC
63 TCA-ATAA-TTGTTTTTTAAAATTCATTGCCTAC
* *
7954777 TTTTATAGGAGTCCTTTTCAAATAAAGATTTTTAAAGTTCATTACCT-TTGTTCATAGGAGCCCT
1 TTTTATAGGAG-CCTTTTCAAA-AAA-TTTTTTAAAGTTCATTGCCTATT-TTCATAGGA-CCCT
*
7954841 TTTCAA-AATTGATTTTTAAA
61 TTTCAATAATTGTTTTTTAAA
7954861 CTTACCTATC
Statistics
Matches: 157, Mismatches: 15, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
95 1 0.01
96 27 0.17
97 45 0.29
98 6 0.04
99 62 0.39
100 16 0.10
ACGTcount: A:0.29, C:0.15, G:0.10, T:0.45
Consensus pattern (94 bp):
TTTTATAGGAGCCTTTTCAAAAAATTTTTTAAAGTTCATTGCCTATTTTCATAGGACCCTTTTCA
ATAATTGTTTTTTAAAATTCATTGCCTAC
Found at i:7954891 original size:48 final size:48
Alignment explanation
Indices: 7954819--7954938 Score: 150
Period size: 48 Copynumber: 2.5 Consensus size: 48
7954809 TAAAGTTCAT
* * * * *
7954819 TACCTTTGTTCATAGGAGCCCTTTTCAAAATTGATTTTTAAACTTACC
1 TACCTATGTTTATAAGAGCTCTTTTCAAAATTAATTTTTAAACTTACC
* * * * *
7954867 TATCTATGTTTATTAGAGTTCTTTTCAAAATTAATTTTTAAAGTTACT
1 TACCTATGTTTATAAGAGCTCTTTTCAAAATTAATTTTTAAACTTACC
7954915 TACCTATGTTTATAAGAGCTCTTT
1 TACCTATGTTTATAAGAGCTCTTT
7954939 AAAAAAAAAA
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.47
Consensus pattern (48 bp):
TACCTATGTTTATAAGAGCTCTTTTCAAAATTAATTTTTAAACTTACC
Found at i:7957769 original size:16 final size:16
Alignment explanation
Indices: 7957748--7957804 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
7957738 TTATTTCTAC
* *
7957748 AAAAAATGAACGAAAG
1 AAAAAAAGAAAGAAAG
7957764 AAAAAAAGAAAGAAAG
1 AAAAAAAGAAAGAAAG
* *
7957780 AAAAAGAAAAAAAAAAG
1 AAAAA-AAGAAAGAAAG
*
7957797 AAGAAAAG
1 AAAAAAAG
7957805 GAATTAATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
16 21 0.62
17 13 0.38
ACGTcount: A:0.79, C:0.02, G:0.18, T:0.02
Consensus pattern (16 bp):
AAAAAAAGAAAGAAAG
Found at i:7957773 original size:8 final size:8
Alignment explanation
Indices: 7957760--7957804 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
7957750 AAAATGAACG
7957760 AAAGAAAA
1 AAAGAAAA
*
7957768 AAAGAAAG
1 AAAGAAAA
7957776 AAAGAAAA
1 AAAGAAAA
*
7957784 AGAAAAAAA
1 A-AAGAAAA
*
7957793 AAAGAAGA
1 AAAGAAAA
7957801 AAAG
1 AAAG
7957805 GAATTAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
8 24 0.77
9 7 0.23
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (8 bp):
AAAGAAAA
Found at i:7957783 original size:14 final size:13
Alignment explanation
Indices: 7957764--7957803 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
7957754 TGAACGAAAG
7957764 AAAAAAAGAAAGAA
1 AAAAAAAGAAA-AA
*
7957778 AGAAAAAGAAAAA
1 AAAAAAAGAAAAA
7957791 AAAAAGAAGAAAA
1 AAAAA-AAGAAAA
7957804 GGAATTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAA
Found at i:7957789 original size:20 final size:20
Alignment explanation
Indices: 7957760--7957803 Score: 70
Period size: 22 Copynumber: 2.1 Consensus size: 20
7957750 AAAATGAACG
7957760 AAAGAAAAAAAGAAAGAAAGAA
1 AAAGAAAAAAA-AAAG-AAGAA
7957782 AAAGAAAAAAAAAAGAAGAA
1 AAAGAAAAAAAAAAGAAGAA
7957802 AA
1 AA
7957804 GGAATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 7 0.32
21 4 0.18
22 11 0.50
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAAAAAAGAAGAA
Found at i:7957791 original size:21 final size:21
Alignment explanation
Indices: 7957760--7957803 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7957750 AAAATGAACG
*
7957760 AAAGAAAAAAAGAAAGAAAGAA
1 AAAGAAAAAAAAAAAG-AAGAA
7957782 AAAG-AAAAAAAAAAGAAGAA
1 AAAGAAAAAAAAAAAGAAGAA
7957802 AA
1 AA
7957804 GGAATTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 10 0.48
22 4 0.19
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAAAAAAAGAAGAA
Found at i:7959038 original size:18 final size:17
Alignment explanation
Indices: 7958997--7959134 Score: 120
Period size: 18 Copynumber: 7.7 Consensus size: 17
7958987 AAATAAATTG
*
7958997 AATTCAAAGATTCACAAA
1 AATTC-AAGATTCTCAAA
* *
7959015 AGTTCAAGGTTCTCAAA
1 AATTCAAGATTCTCAAA
7959032 ATATTCAAGATTCTCAAA
1 A-ATTCAAGATTCTCAAA
*
7959050 AATTCAAGATTCGTAAAA
1 AATTCAAGATTC-TCAAA
7959068 AATTCAAAGATTCAT-AAA
1 AATTC-AAGATTC-TCAAA
7959086 AGATTCAAGATT-TGCAAA
1 A-ATTCAAGATTCT-CAAA
*
7959104 AATTTAAAGATT-TGCAAAA
1 AA-TTCAAGATTCT-C-AAA
7959123 AATTCAAGATTC
1 AATTCAAGATTC
7959135 GTAAAGATTA
Statistics
Matches: 102, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
16 1 0.01
17 23 0.23
18 61 0.60
19 17 0.17
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (17 bp):
AATTCAAGATTCTCAAA
Done.