Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 42 of 105
Found at i:7959050 original size:35 final size:36
Alignment explanation
Indices: 7958997--7959139 Score: 134
Period size: 36 Copynumber: 4.0 Consensus size: 36
7958987 AAATAAATTG
* *
7958997 AATTCAAAGATTCACAAAAGTTCAAGGTTC-TCAAAA
1 AATTCAAAGATTCTCAAAAGTTCAAGATTCGT-AAAA
* *
7959033 TATTC-AAGATTCTCAAAAATTCAAGATTCGTAAAA
1 AATTCAAAGATTCTCAAAAGTTCAAGATTCGTAAAA
* *
7959068 AATTCAAAGATTCAT-AAAAGATTCAAGATTTG-CAAA
1 AATTCAAAGATTC-TCAAAAG-TTCAAGATTCGTAAAA
* *
7959104 AATTTAAAGATT-TGCAAAAAATTCAAGATTCGTAAA
1 AATTCAAAGATTCT-C-AAAAGTTCAAGATTCGTAAA
7959140 GATTAAAAAA
Statistics
Matches: 87, Mismatches: 12, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
34 1 0.01
35 29 0.33
36 40 0.46
37 17 0.20
ACGTcount: A:0.48, C:0.13, G:0.10, T:0.29
Consensus pattern (36 bp):
AATTCAAAGATTCTCAAAAGTTCAAGATTCGTAAAA
Found at i:7959104 original size:54 final size:54
Alignment explanation
Indices: 7958997--7959230 Score: 153
Period size: 55 Copynumber: 4.3 Consensus size: 54
7958987 AAATAAATTG
* * * * *
7958997 AATTCAAAGATTCAC-AAAAGTTCAAGGTTC-TCAAAATATTCAAGATTCTCAAA
1 AATTTAAAGATTCGCAAAAAATTCAAGATTCAT-AAAAGATTCAAGATTCTCAAA
* *
7959050 AA-TTCAAGATTCGTAAAAAATTCAAAGATTCATAAAAGATTCAAGATT-TGCAAA
1 AATTTAAAGATTCGCAAAAAATTC-AAGATTCATAAAAGATTCAAGATTCT-CAAA
* * * * *
7959104 AATTTAAAGATTTGCAAAAAATTCAAGATTCGT-AAAGATTAAAAAATTCACAAA
1 AATTTAAAGATTCGCAAAAAATTCAAGATTCATAAAAGATT-CAAGATTCTCAAA
* * * * *
7959158 AATTTTAAATACTT-GTAAAAGATTCAAGATT--TACAAAGATTAAAAGA-TCGTAAAA
1 AA-TTTAAAGA-TTCGCAAAAAATTCAAGATTCATA-AAAGATT-CAAGATTC-TCAAA
* *
7959213 AATTTCAAGATTTGCAAA
1 AATTTAAAGATTCGCAAA
7959231 GAACTCAAAG
Statistics
Matches: 145, Mismatches: 23, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
52 8 0.06
53 20 0.14
54 57 0.39
55 58 0.40
56 2 0.01
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.29
Consensus pattern (54 bp):
AATTTAAAGATTCGCAAAAAATTCAAGATTCATAAAAGATTCAAGATTCTCAAA
Found at i:7959105 original size:36 final size:35
Alignment explanation
Indices: 7958997--7959161 Score: 131
Period size: 36 Copynumber: 4.6 Consensus size: 35
7958987 AAATAAATTG
* * *
7958997 AATTCAAAGATTCACAAAAGTTCAAGGTTCT-CAAA
1 AATTCAAAGATTCATAAAAATTCAAGATT-TGCAAA
* *
7959032 ATATTC-AAGATTC-TCAAAAATTCAAGATTCGTAAAA
1 A-ATTCAAAGATTCAT-AAAAATTCAAGATTTG-CAAA
7959068 AATTCAAAGATTCATAAAAGATTCAAGATTTGCAAA
1 AATTCAAAGATTCATAAAA-ATTCAAGATTTGCAAA
* * *
7959104 AATTTAAAGATTTGCA-AAAAATTCAAGATTCGTAAA
1 AATTCAAAGA-TT-CATAAAAATTCAAGATTTGCAAA
* * * *
7959140 GATTAAAAAATTCACAAAAATT
1 AATTCAAAGATTCATAAAAATT
7959162 TTAAATACTT
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
34 2 0.02
35 33 0.31
36 52 0.49
37 18 0.17
38 2 0.02
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (35 bp):
AATTCAAAGATTCATAAAAATTCAAGATTTGCAAA
Found at i:7959165 original size:55 final size:54
Alignment explanation
Indices: 7959038--7959230 Score: 176
Period size: 55 Copynumber: 3.6 Consensus size: 54
7959028 CAAAATATTC
* * * * *
7959038 AAGATTCTCAAAAA-TTCAAGATTCGTAAAAAATTCAAAGATTCATAAAAGATT-C
1 AAGATTCGCAAAAATTTAAAGATTTGCAAAAAATTC-AAGATTCAT-AAAGATTAA
* *
7959092 AAGATTTGCAAAAATTTAAAGATTTGCAAAAAATTCAAGATTCGTAAAGATTAA
1 AAGATTCGCAAAAATTTAAAGATTTGCAAAAAATTCAAGATTCATAAAGATTAA
* * * * * * * *
7959146 AAAATTCACAAAAATTTTAAATACTTGTAAAAGATTCAAGATTTACAAAGATTAA
1 AAGATTCGCAAAAA-TTTAAAGATTTGCAAAAAATTCAAGATTCATAAAGATTAA
* *
7959201 AAGA-TCGTAAAAAATTTCAAGATTTGCAAA
1 AAGATTCG-CAAAAATTTAAAGATTTGCAAA
7959231 GAACTCAAAG
Statistics
Matches: 111, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
53 7 0.06
54 45 0.41
55 59 0.53
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.29
Consensus pattern (54 bp):
AAGATTCGCAAAAATTTAAAGATTTGCAAAAAATTCAAGATTCATAAAGATTAA
Found at i:7959337 original size:124 final size:124
Alignment explanation
Indices: 7959192--7959454 Score: 402
Period size: 124 Copynumber: 2.1 Consensus size: 124
7959182 CAAGATTTAC
* * *
7959192 AAAGATTAAAAGA-TCGTAAAAAATTTCAAGATTTGCAAAGAACTCAAAGATTTGTAGGGGATTC
1 AAAGATT-CAAGATTCGCAAAAAAATTCAAGATTTGCAAAGAACTCAAAGATTTGTAGGGGATTC
***
7959256 AAGATAACGATTAAAAGGTTCGCAAGAGATTCAAGATTTGCAAAAATTCAAAGATTTGGA
65 AAGATAACGATTAAAAGGTTCGCAAGAGATTCAAGATTTGCAAAAATTCAAAGATTCAAA
* * *
7959316 AAAGATTCGAGATTCGCAAAAAAATTCAAGATTTGTAAAGAATTCAAAGATTTGTAGGGGATTCA
1 AAAGATTCAAGATTCGCAAAAAAATTCAAGATTTGCAAAGAACTCAAAGATTTGTAGGGGATTCA
* * *
7959381 AGATAATGATTCAAAGGTTTGCAAGAGATTCAAGATTTGCAAAAATTCAAAGATTCAAA
66 AGATAACGATTAAAAGGTTCGCAAGAGATTCAAGATTTGCAAAAATTCAAAGATTCAAA
7959440 AAAGATTCAAGATTC
1 AAAGATTCAAGATTC
7959455 AAAAAGATAT
Statistics
Matches: 125, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
123 3 0.02
124 122 0.98
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.27
Consensus pattern (124 bp):
AAAGATTCAAGATTCGCAAAAAAATTCAAGATTTGCAAAGAACTCAAAGATTTGTAGGGGATTCA
AGATAACGATTAAAAGGTTCGCAAGAGATTCAAGATTTGCAAAAATTCAAAGATTCAAA
Found at i:7959365 original size:19 final size:17
Alignment explanation
Indices: 7959284--7959371 Score: 77
Period size: 19 Copynumber: 4.8 Consensus size: 17
7959274 TTCGCAAGAG
*
7959284 ATTCAAGATTTGCAAAA
1 ATTCAAGATTTGTAAAA
*
7959301 ATTCAAAGATTTGGAAAA
1 ATTC-AAGATTTGTAAAA
* * *
7959319 GATTCGAGATTCGCAAAAAA
1 -ATTCAAGATTTG--TAAAA
7959339 ATTCAAGATTTGTAAAGA
1 ATTCAAGATTTGTAAA-A
7959357 ATTCAAAGATTTGTA
1 ATTC-AAGATTTGTA
7959372 GGGGATTCAA
Statistics
Matches: 58, Mismatches: 7, Indels: 10
0.77 0.09 0.13
Matches are distributed among these distances:
17 7 0.12
18 23 0.40
19 24 0.41
20 4 0.07
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (17 bp):
ATTCAAGATTTGTAAAA
Found at i:7959381 original size:19 final size:19
Alignment explanation
Indices: 7959050--7959371 Score: 71
Period size: 18 Copynumber: 17.8 Consensus size: 19
7959040 GATTCTCAAA
* *
7959050 AATTC-AAGATTCGTAAAA
1 AATTCAAAGATTTGTAAAG
**
7959068 AATTCAAAGATTCATAAA-
1 AATTCAAAGATTTGTAAAG
*
7959086 AGATTC-AAGATTTGCAAA-
1 A-ATTCAAAGATTTGTAAAG
* * *
7959104 AATTTAAAGATTTGCAAAA
1 AATTCAAAGATTTGTAAAG
*
7959123 AATTC-AAGATTCGTAAAG
1 AATTCAAAGATTTGTAAAG
* * ***
7959141 -ATTAAAAAATTCACAAA-
1 AATTCAAAGATTTGTAAAG
* * *
7959158 AATTTTAAATACTTGTAAA-
1 AA-TTCAAAGATTTGTAAAG
**
7959177 AGATTC-AAGATTTACAAAG
1 A-ATTCAAAGATTTGTAAAG
* * *
7959196 -ATTAAAAGA-TCGTAAAA
1 AATTCAAAGATTTGTAAAG
*
7959213 AATTTC-AAGATTTGCAAAG
1 AA-TTCAAAGATTTGTAAAG
* **
7959232 AACTCAAAGATTTGTAGGG
1 AATTCAAAGATTTGTAAAG
* *
7959251 GATTC-AAGA----TAACG
1 AATTCAAAGATTTGTAAAG
* * * *
7959265 -ATTAAAAGGTTCG-CAAG
1 AATTCAAAGATTTGTAAAG
*
7959282 AGATTC-AAGATTTGCAAA-
1 A-ATTCAAAGATTTGTAAAG
*
7959300 AATTCAAAGATTTGGAAA-
1 AATTCAAAGATTTGTAAAG
* * * *
7959318 AGATTC-GAGATTCGCAAAAA
1 A-ATTCAAAGATTTG-TAAAG
7959338 AATTC-AAGATTTGTAAAG
1 AATTCAAAGATTTGTAAAG
7959356 AATTCAAAGATTTGTA
1 AATTCAAAGATTTGTA
7959372 GGGGATTCAA
Statistics
Matches: 220, Mismatches: 57, Indels: 53
0.67 0.17 0.16
Matches are distributed among these distances:
13 3 0.01
14 6 0.03
17 19 0.09
18 104 0.47
19 86 0.39
20 2 0.01
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.28
Consensus pattern (19 bp):
AATTCAAAGATTTGTAAAG
Found at i:7959421 original size:18 final size:17
Alignment explanation
Indices: 7959277--7959435 Score: 83
Period size: 18 Copynumber: 8.9 Consensus size: 17
7959267 TAAAAGGTTC
7959277 GCAAGAGATTCAAGATTT
1 GCAA-AGATTCAAGATTT
*
7959295 GCAAAAATTCAAAGATTT
1 GCAAAGATTC-AAGATTT
* * *
7959313 GGAAAAGATTCGAGATTC
1 -GCAAAGATTCAAGATTT
*
7959331 GCAAAAAAATTCAAGATTT
1 GC--AAAGATTCAAGATTT
*
7959350 GTAAAGAATTCAAAGATTT
1 GCAAAG-ATTC-AAGATTT
* **
7959369 GTAGGGGATTCAAGA--T
1 GCA-AAGATTCAAGATTT
* *
7959385 --AATGATTCAAAGGTTT
1 GCAAAGATTC-AAGATTT
7959401 GCAAGAGATTCAAGATTT
1 GCAA-AGATTCAAGATTT
*
7959419 GCAAAAATTCAAAGATT
1 GCAAAGATTC-AAGATT
7959436 CAAAAAAGAT
Statistics
Matches: 108, Mismatches: 19, Indels: 28
0.70 0.12 0.18
Matches are distributed among these distances:
13 5 0.05
14 4 0.04
16 2 0.02
17 14 0.13
18 42 0.39
19 40 0.37
20 1 0.01
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.28
Consensus pattern (17 bp):
GCAAAGATTCAAGATTT
Found at i:7959446 original size:36 final size:37
Alignment explanation
Indices: 7959406--7959508 Score: 108
Period size: 37 Copynumber: 2.8 Consensus size: 37
7959396 GGTTTGCAAG
7959406 AGATTCAAGATTTGC-AAAAATTCAAAGATTCAAAAA-
1 AGATTCAAGATTT-CAAAAAATTCAAAGATTCAAAAAC
*
7959442 AGATTCAAGA-TTCAAAAAGATAT-AAAAATTTCAAAAAC
1 AGATTCAAGATTTCAAAAA-AT-TCAAAGA-TTCAAAAAC
*
7959480 A-TTTCAAGATTTACAAAAAATTCAAAGAT
1 AGATTCAAGATTT-CAAAAAATTCAAAGAT
7959509 GTGTTAGAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
34 1 0.02
35 6 0.11
36 16 0.29
37 18 0.32
38 9 0.16
39 6 0.11
ACGTcount: A:0.54, C:0.11, G:0.09, T:0.26
Consensus pattern (37 bp):
AGATTCAAGATTTCAAAAAATTCAAAGATTCAAAAAC
Found at i:7959486 original size:124 final size:123
Alignment explanation
Indices: 7959222--7959491 Score: 357
Period size: 124 Copynumber: 2.2 Consensus size: 123
7959212 AAATTTCAAG
* *
7959222 ATTTGCAAAGAACTCAAAGATTTGTAGGGGATTCAAGATAACGATTAAAAGGTTCGCAAGAGATT
1 ATTTGCAAAAAATTCAAAGATTTGTAGGGGATTCAAGATAACGATTAAAAGGTTCGCAAGAGATT
*** * * *
7959287 CAAGATTTGCAAAAATTCAAAGATTTGGAAAAGATTCGAGATTCGCAAAAAAATTCAAG
66 CAAGATTTGCAAAAATTCAAAGATTCAAAAAAGATTCAAGATTC-CAAAAAAATTAAAA
* * * * *
7959346 ATTTGTAAAGAATTCAAAGATTTGTAGGGGATTCAAGATAATGATTCAAAGGTTTGCAAGAGATT
1 ATTTGCAAAAAATTCAAAGATTTGTAGGGGATTCAAGATAACGATTAAAAGGTTCGCAAGAGATT
*
7959411 CAAGATTTGCAAAAATTCAAAGATTCAAAAAAGATTCAAGATT-CAAAAAGATATAAAA
66 CAAGATTTGCAAAAATTCAAAGATTCAAAAAAGATTCAAGATTCCAAAAAAAT-TAAAA
7959469 ATTT-CAAAAACATTTC-AAGATTT
1 ATTTGCAAAAA-A-TTCAAAGATTT
7959492 ACAAAAAATT
Statistics
Matches: 129, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
122 12 0.09
123 15 0.12
124 102 0.79
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.27
Consensus pattern (123 bp):
ATTTGCAAAAAATTCAAAGATTTGTAGGGGATTCAAGATAACGATTAAAAGGTTCGCAAGAGATT
CAAGATTTGCAAAAATTCAAAGATTCAAAAAAGATTCAAGATTCCAAAAAAATTAAAA
Found at i:7959507 original size:19 final size:19
Alignment explanation
Indices: 7959388--7959508 Score: 82
Period size: 18 Copynumber: 6.6 Consensus size: 19
7959378 TCAAGATAAT
* *
7959388 GATTCAAAGGTTTGC-AAGA
1 GATTCAAAGATTT-CAAAAA
7959407 GATTC-AAGATTTGC-AAAA
1 GATTCAAAGATTT-CAAAAA
7959425 -ATTCAAAGA-TTCAAAAAA
1 GATTCAAAGATTTC-AAAAA
7959443 GATTC-AAGA-TTCAAAAA
1 GATTCAAAGATTTCAAAAA
*
7959460 GATAT-AAAAATTTCAAAAA
1 GAT-TCAAAGATTTCAAAAA
*
7959479 CATTTC-AAGATTTACAAAAA
1 GA-TTCAAAGATTT-CAAAAA
7959499 -ATTCAAAGAT
1 GATTCAAAGAT
7959509 GTGTTAGAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 22
0.76 0.04 0.19
Matches are distributed among these distances:
16 1 0.01
17 14 0.16
18 33 0.38
19 31 0.36
20 7 0.08
ACGTcount: A:0.51, C:0.11, G:0.12, T:0.26
Consensus pattern (19 bp):
GATTCAAAGATTTCAAAAA
Found at i:7959599 original size:93 final size:94
Alignment explanation
Indices: 7959496--7959690 Score: 275
Period size: 93 Copynumber: 2.1 Consensus size: 94
7959486 AGATTTACAA
* * ** *
7959496 AAAATTCAAAGATGTGTTAGAAATTAAAGGTAATTATTCCAAGGTTTACAAAGAATTTCAAAGTC
1 AAAATTCAAAGATGTGTAAGAAATTAAAGATAACAATTCAAAGGTTTACAAAGAATTTCAAAGTC
*
7959561 TCGCAATTGTAAAGATTTGCAAAAAATT-
66 TCACAATTGTAAAGATTTGCAAAAAATTC
* * * * *
7959589 AAAATTCAAAGATTTGTAAGATATTCAAGATAACAATTTAAAGGTTTGCAAAGAATTTCAAAGTC
1 AAAATTCAAAGATGTGTAAGAAATTAAAGATAACAATTCAAAGGTTTACAAAGAATTTCAAAGTC
7959654 TCACAATTGTAAAGATTTGCAAAAAATTC
66 TCACAATTGTAAAGATTTGCAAAAAATTC
*
7959683 AAGATTCA
1 AAAATTCA
7959691 TAAAGATTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
93 82 0.92
94 7 0.08
ACGTcount: A:0.45, C:0.10, G:0.14, T:0.31
Consensus pattern (94 bp):
AAAATTCAAAGATGTGTAAGAAATTAAAGATAACAATTCAAAGGTTTACAAAGAATTTCAAAGTC
TCACAATTGTAAAGATTTGCAAAAAATTC
Found at i:7959743 original size:19 final size:19
Alignment explanation
Indices: 7959702--7959787 Score: 88
Period size: 19 Copynumber: 4.6 Consensus size: 19
7959692 AAAGATTTAT
** **
7959702 GATTCAAAGATTCACAAGT
1 GATTCAAAGATTTGCAAAA
7959721 GATTCAAAGATTTGCAAAA
1 GATTCAAAGATTTGCAAAA
* *
7959740 GATTC-AAG-TTTCCCAAA
1 GATTCAAAGATTTGCAAAA
7959757 GATTC-AAGATTTGCAAAA
1 GATTCAAAGATTTGCAAAA
7959775 GATTTCAAAGATT
1 GA-TTCAAAGATT
7959788 CACATTTGAA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
17 15 0.27
18 12 0.21
19 23 0.41
20 6 0.11
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (19 bp):
GATTCAAAGATTTGCAAAA
Found at i:7959775 original size:18 final size:18
Alignment explanation
Indices: 7959721--7959778 Score: 82
Period size: 17 Copynumber: 3.2 Consensus size: 18
7959711 ATTCACAAGT
7959721 GATTCAAAGATTTGCAAAA
1 GATTC-AAGATTTGCAAAA
* *
7959740 GATTCAAG-TTTCCCAAA
1 GATTCAAGATTTGCAAAA
7959757 GATTCAAGATTTGCAAAA
1 GATTCAAGATTTGCAAAA
7959775 GATT
1 GATT
7959779 TCAAAGATTC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 15 0.44
18 14 0.41
19 5 0.15
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (18 bp):
GATTCAAGATTTGCAAAA
Found at i:7961074 original size:22 final size:22
Alignment explanation
Indices: 7961049--7961094 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
7961039 TTTTTCTGAG
*
7961049 ATTATACCTAAAGGTTTTAAAA
1 ATTATACCTAAAGGTCTTAAAA
* *
7961071 ATTATGCCTAAAGGTCTTACAA
1 ATTATACCTAAAGGTCTTAAAA
7961093 AT
1 AT
7961095 CATGTCTGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (22 bp):
ATTATACCTAAAGGTCTTAAAA
Found at i:7965104 original size:26 final size:27
Alignment explanation
Indices: 7965070--7965125 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
7965060 AAAATTTGAC
* *
7965070 AATTATCAAATGAATGAGTTTCTT-AGA
1 AATTATCAAATG-ATAAATTTCTTAAGA
7965097 AATT-TCAAATGATAAATTTCTTAAGA
1 AATTATCAAATGATAAATTTCTTAAGA
7965123 AAT
1 AAT
7965126 CTGTAGGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 9 0.35
26 13 0.50
27 4 0.15
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.38
Consensus pattern (27 bp):
AATTATCAAATGATAAATTTCTTAAGA
Found at i:7965428 original size:13 final size:13
Alignment explanation
Indices: 7965410--7965442 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7965400 ATATATTTTC
*
7965410 AATAAAAAAACCA
1 AATAAAAAAACAA
7965423 AAT-AAAAAACAA
1 AATAAAAAAACAA
7965435 AATAAAAA
1 AATAAAAA
7965443 TTATTAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (13 bp):
AATAAAAAAACAA
Found at i:7970520 original size:286 final size:287
Alignment explanation
Indices: 7969976--7970536 Score: 727
Period size: 286 Copynumber: 2.0 Consensus size: 287
7969966 CTAGGCTTCG
* *
7969976 TGGTTAGTAAAAGAGGGATTGAAGTTGATCCTAACAAAATATAAGCTATTCAAAATTAGTCACCT
1 TGGTCAGTAAAAGAGGGATTGAAGTCGATCCTAACAAAATATAAGCTATTCAAAATTAGTCACCT
* * * * *
7970041 CTAAGCATATCAAAAAAAGTTTGAGGCCTTCTGGTAAATTGAACTACATTTCTCAGTTTATTTCT
66 CCAAGCACATCAAAAAAAGTTTGAGGCCTTCTGGTAAACTAAACTACATTTCTCAGTTCATTTCT
* * **
7970106 CAACTTACTTATAAATGTGATCCCCATTTTTAAGTTTTTTTGTAAGAATAATCCTAAAAAATGGA
131 CAACTTACCTATAAATGTGATCCCCATTTTTAAGCTTTTTCCTAAGAATAATCCTAAAAAATGGA
* * * * *
7970171 ATGAGGAATGCCAATAGGCTTTTAATAAAATTAATCAATACTTTTTAAATCCTTCAGTGTTGGTG
196 ATGAGAAATGCCAAAAGACTTTTAATAAAATTAATCAATACTTGTCAAATCCTTCAGTGTTGGTG
*
7970236 CCACCTGTTCTAAGAGACCTTTGATTA
261 CCACCCGTTCTAAGAGACCTTTGATTA
* ** * *
7970263 TGGTCAGTGAAAGAGGGATTGAAGTCGATTTTGACAAAATA-AGAGCTATTCAAAATTTGTCACC
1 TGGTCAGTAAAAGAGGGATTGAAGTCGATCCTAACAAAATATA-AGCTATTCAAAATTAGTCACC
** * * * *
7970327 TCCAAGCACATTGAAAGAAGTTTGAGGCTTTTTGGGTAGACTAAACTACATTTCTCAGTTCATTT
65 TCCAAGCACATCAAAAAAAGTTTGAGGCCTTCT-GGTAAACTAAACTACATTTCTCAGTTCATTT
* * ** *
7970392 CTCAGCTTACCTATAAGTGTGAT-CCCA-TTTTAAGCTTTTTCCTAAGAATAATCCTGGAGAATG
129 CTCAACTTACCTATAAATGTGATCCCCATTTTTAAGCTTTTTCCTAAGAATAATCCTAAAAAATG
* *
7970455 GAATGAGAAATGCCAAAAGACTTTTGATAAAATTAAGT-AGTACTTGTCAAATCC-TCTAGTGTT
194 GAATGAGAAATGCCAAAAGACTTTTAATAAAATTAA-TCAATACTTGTCAAATCCTTC-AGTGTT
*
7970518 GGTGTCACCCGTTCTAAGA
257 GGTGCCACCCGTTCTAAGA
7970537 AGATCTCTAA
Statistics
Matches: 234, Mismatches: 36, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
285 2 0.01
286 99 0.42
287 86 0.37
288 47 0.20
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Consensus pattern (287 bp):
TGGTCAGTAAAAGAGGGATTGAAGTCGATCCTAACAAAATATAAGCTATTCAAAATTAGTCACCT
CCAAGCACATCAAAAAAAGTTTGAGGCCTTCTGGTAAACTAAACTACATTTCTCAGTTCATTTCT
CAACTTACCTATAAATGTGATCCCCATTTTTAAGCTTTTTCCTAAGAATAATCCTAAAAAATGGA
ATGAGAAATGCCAAAAGACTTTTAATAAAATTAATCAATACTTGTCAAATCCTTCAGTGTTGGTG
CCACCCGTTCTAAGAGACCTTTGATTA
Found at i:7972750 original size:7 final size:7
Alignment explanation
Indices: 7972731--7972784 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
7972721 ACTATGCTTA
7972731 AAAAAAT
1 AAAAAAT
7972738 GAAAAAA-
1 -AAAAAAT
7972745 ATAAAAA-
1 A-AAAAAT
*
7972752 AATAAA-
1 AAAAAAT
7972758 AAAAAAT
1 AAAAAAT
7972765 AAAAAAT
1 AAAAAAT
7972772 AAAAAAT
1 AAAAAAT
7972779 AAAAAA
1 AAAAAA
7972785 AGAAAAAAGA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
6 10 0.24
7 26 0.62
8 6 0.14
ACGTcount: A:0.87, C:0.00, G:0.02, T:0.11
Consensus pattern (7 bp):
AAAAAAT
Found at i:7972785 original size:8 final size:8
Alignment explanation
Indices: 7972729--7972792 Score: 85
Period size: 8 Copynumber: 7.9 Consensus size: 8
7972719 ATACTATGCT
7972729 TAAAAAAA
1 TAAAAAAA
7972737 TGAAAAAAA
1 T-AAAAAAA
7972746 TAAAAAAA
1 TAAAAAAA
7972754 TAAAAAAA
1 TAAAAAAA
*
7972762 AATAAAAAA
1 TA-AAAAAA
7972771 T-AAAAAA
1 TAAAAAAA
7972778 TAAAAAAA
1 TAAAAAAA
*
7972786 GAAAAAA
1 TAAAAAA
7972793 GAAGACTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
7 7 0.14
8 29 0.58
9 14 0.28
ACGTcount: A:0.86, C:0.00, G:0.03, T:0.11
Consensus pattern (8 bp):
TAAAAAAA
Found at i:7972810 original size:1 final size:1
Alignment explanation
Indices: 7972739--7972792 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
7972729 TAAAAAAATG
* * * * * *
7972739 AAAAAAATAAAAAAATAAAAAAAAATAAAAAATAAAAAATAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7972793 GAAGACTTAA
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.89, C:0.00, G:0.02, T:0.09
Consensus pattern (1 bp):
A
Found at i:7973547 original size:33 final size:33
Alignment explanation
Indices: 7973510--7973580 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
7973500 AATTGACATT
**
7973510 TGCATAACATGCATTGCATTTTTGAATATCTAG
1 TGCATAACATGCATTGCATTTAAGAATATCTAG
** *
7973543 TGCATAGTATGCATTGCATTTAAGAATGTCTAG
1 TGCATAACATGCATTGCATTTAAGAATATCTAG
7973576 TGCAT
1 TGCAT
7973581 GAATTTAGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (33 bp):
TGCATAACATGCATTGCATTTAAGAATATCTAG
Found at i:7973919 original size:44 final size:43
Alignment explanation
Indices: 7973813--7974007 Score: 187
Period size: 44 Copynumber: 4.4 Consensus size: 43
7973803 ATTGTCAAGA
* *
7973813 AGCTTTATTTATTTTTC-AAAGTCATTGAGCCTCTATTTAGAGC
1 AGCTTTATTTA-TTTTCAAAAGTCATTGAGCCTCTACTTAGAGG
* * *
7973856 A-ATCTTGTTTACTTTTCAAAAGTCATTGAGTCTCTACTTAGAGG
1 AGCT-TTATTTA-TTTTCAAAAGTCATTGAGCCTCTACTTAGAGG
** * ** *
7973900 AGCTTTATTTATTTCTCAAAAGTTGTTAAGCCTCTGTTTAAAGG
1 AGCTTTATTTATTT-TCAAAAGTCATTGAGCCTCTACTTAGAGG
* * * *
7973944 AGCCTTATTTACTTTTCAAAAGTCATTGAACCTCTGCTTAGAAG
1 AGCTTTATTTA-TTTTCAAAAGTCATTGAGCCTCTACTTAGAGG
7973988 AGCTTTATTTATTTTTCAAA
1 AGCTTTATTTA-TTTTCAAA
7974008 GTCTTAAACC
Statistics
Matches: 122, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 15 0.12
44 102 0.84
45 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (43 bp):
AGCTTTATTTATTTTCAAAAGTCATTGAGCCTCTACTTAGAGG
Found at i:7973961 original size:88 final size:88
Alignment explanation
Indices: 7973813--7974014 Score: 257
Period size: 88 Copynumber: 2.3 Consensus size: 88
7973803 ATTGTCAAGA
* * * *
7973813 AGCTTTATTTATTTTTC-AAAGTCATTGAGCCTCTATTTAGAGCAATCTTGTTTACTTTTCAAAA
1 AGCTTTATTTATTTTTCAAAAGTCATTAAGCCTCTATTTAAAGCAACCTTATTTACTTTTCAAAA
** *
7973877 GTCATTGAGTCTCTACTTAGAGG
66 GTCATTGAACCTCTACTTAGAAG
* ** * * *
7973900 AGCTTTATTTATTTCTCAAAAGTTGTTAAGCCTCTGTTTAAAGGAGCCTTATTTACTTTTCAAAA
1 AGCTTTATTTATTTTTCAAAAGTCATTAAGCCTCTATTTAAAGCAACCTTATTTACTTTTCAAAA
*
7973965 GTCATTGAACCTCTGCTTAGAAG
66 GTCATTGAACCTCTACTTAGAAG
7973988 AGCTTTATTTATTTTTC-AAAGTC-TTAA
1 AGCTTTATTTATTTTTCAAAAGTCATTAA
7974015 ACCTTCATTT
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
86 4 0.04
87 21 0.21
88 73 0.74
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.43
Consensus pattern (88 bp):
AGCTTTATTTATTTTTCAAAAGTCATTAAGCCTCTATTTAAAGCAACCTTATTTACTTTTCAAAA
GTCATTGAACCTCTACTTAGAAG
Found at i:7974231 original size:24 final size:24
Alignment explanation
Indices: 7974204--7974250 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7974194 TAATAAAAAT
*
7974204 AAAAATAAAAAATAAAAT-AAATGA
1 AAAAACAAAAAA-AAAATCAAATGA
7974228 AAAAACAAAAAAAAAATCAAATG
1 AAAAACAAAAAAAAAATCAAATG
7974251 GTTGAGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.79, C:0.04, G:0.04, T:0.13
Consensus pattern (24 bp):
AAAAACAAAAAAAAAATCAAATGA
Found at i:7974248 original size:12 final size:11
Alignment explanation
Indices: 7974195--7974244 Score: 55
Period size: 12 Copynumber: 4.3 Consensus size: 11
7974185 TGTTTTTGTT
7974195 AATAAAAATAAA
1 AATAAAAA-AAA
7974207 AATAAAAAATAA
1 AATAAAAAA-AA
*
7974219 AATAAATGAAAA
1 AATAAA-AAAAA
*
7974231 AACAAAAAAAA
1 AATAAAAAAAA
7974242 AAT
1 AAT
7974245 CAAATGGTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
11 7 0.22
12 23 0.72
13 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:7975361 original size:26 final size:28
Alignment explanation
Indices: 7975332--7975385 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
7975322 GAGATTCTTT
* *
7975332 GAAATTTC-AAATGATAAATTTC-CTAA
1 GAAATCTCTAAATGAAAAATTTCTCTAA
*
7975358 GAAATCTCTAGATGAAAAATTTCTCTAA
1 GAAATCTCTAAATGAAAAATTTCTCTAA
7975386 ATTTATCCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.30
27 12 0.52
28 4 0.17
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (28 bp):
GAAATCTCTAAATGAAAAATTTCTCTAA
Found at i:7978578 original size:30 final size:30
Alignment explanation
Indices: 7978543--7978612 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
7978533 AATTTAATAC
*
7978543 ACAAAA-TCTAATAAAATACAATAATCAAAT
1 ACAAAATTC-AATAAAAGACAATAATCAAAT
7978573 ACAAAATTCAATAAAAGACAATAATCAAAT
1 ACAAAATTCAATAAAAGACAATAATCAAAT
7978603 AATCAAAATT
1 -A-CAAAATT
7978613 TAATCAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 26 0.72
31 3 0.08
32 7 0.19
ACGTcount: A:0.63, C:0.13, G:0.01, T:0.23
Consensus pattern (30 bp):
ACAAAATTCAATAAAAGACAATAATCAAAT
Found at i:7979265 original size:21 final size:21
Alignment explanation
Indices: 7979241--7979282 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7979231 ACTTTTTCTC
* *
7979241 TCTTGATTTTTTCTAATTGAT
1 TCTTCATTATTTCTAATTGAT
7979262 TCTTCATTATTTCTAATTGAT
1 TCTTCATTATTTCTAATTGAT
7979283 ACAAAGGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.60
Consensus pattern (21 bp):
TCTTCATTATTTCTAATTGAT
Found at i:7980104 original size:3 final size:3
Alignment explanation
Indices: 7980098--7980156 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
7980088 AAAAAAAGAG
7980098 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7980146 AAT AAT AAT AA
1 AAT AAT AAT AA
7980157 AAGCATTCTT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7980650 original size:37 final size:37
Alignment explanation
Indices: 7980608--7980840 Score: 143
Period size: 37 Copynumber: 6.3 Consensus size: 37
7980598 CCTTTCCACC
* * * *
7980608 CACATCTAAATAGATAGTACATATATTTCATCTCATG
1 CACATCTAAATAGATAATACATGTAATCCATCTCATG
* * * * *
7980645 TACATCGTAAA-AAATAATACATGT-AGCTTATTTCATG
1 CACATC-TAAATAGATAATACATGTAATC-CATCTCATG
* * * *
7980682 CACATATAAATAGATAATTCATGTAGTCCATCTCAAG
1 CACATCTAAATAGATAATACATGTAATCCATCTCATG
*
7980719 CATATC-ATAATAGATAATACATGTAATCCATCTCATG
1 CACATCTA-AATAGATAATACATGTAATCCATCTCATG
* * * * * * *
7980756 TACATC-ATAATAGA-CATACATGCATTCCATTTTATA
1 CACATCTA-AATAGATAATACATGTAATCCATCTCATG
* * * * **
7980792 CACATCTTAATAGACAATACATGCATTCCATCTCACA
1 CACATCTAAATAGATAATACATGTAATCCATCTCATG
*
7980829 CAAATCTAAATA
1 CACATCTAAATA
7980841 CATGTATTTC
Statistics
Matches: 150, Mismatches: 39, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
36 32 0.21
37 113 0.75
38 5 0.03
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (37 bp):
CACATCTAAATAGATAATACATGTAATCCATCTCATG
Found at i:7980900 original size:37 final size:38
Alignment explanation
Indices: 7980859--7980943 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 38
7980849 TCATCTCATA
* *
7980859 CATATTTTAATAGATAATACATGCATTCCA-TTTAATG
1 CATATCTTAATAAATAATACATGCATTCCATTTTAATG
* * * *
7980896 CATATCCTAATAAATAGTACATGCATTCTATTTTATTG
1 CATATCTTAATAAATAATACATGCATTCCATTTTAATG
7980934 CATATCTTAA
1 CATATCTTAA
7980944 GGTTGTGTCG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 25 0.62
38 15 0.38
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.41
Consensus pattern (38 bp):
CATATCTTAATAAATAATACATGCATTCCATTTTAATG
Found at i:7983399 original size:16 final size:17
Alignment explanation
Indices: 7983362--7983399 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
7983352 AAAGTGCCTT
*
7983362 AAAAAAAGAAAAAATAG
1 AAAAAGAGAAAAAATAG
7983379 -AAAAGAGAAAAAA-AG
1 AAAAAGAGAAAAAATAG
7983394 AAAAAG
1 AAAAAG
7983400 GGTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 2 0.11
16 17 0.89
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.03
Consensus pattern (17 bp):
AAAAAGAGAAAAAATAG
Found at i:7984081 original size:16 final size:16
Alignment explanation
Indices: 7984042--7984081 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7984032 GAGGGCAAGC
7984042 AAAG-AAAAAGAATAA
1 AAAGAAAAAAGAATAA
7984057 AAA-ACAAAAAGAATAA
1 AAAGA-AAAAAGAATAA
7984073 AAAGAAAAA
1 AAAGAAAAA
7984082 CAACTATGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 3 0.14
16 18 0.82
17 1 0.05
ACGTcount: A:0.82, C:0.03, G:0.10, T:0.05
Consensus pattern (16 bp):
AAAGAAAAAAGAATAA
Found at i:7988363 original size:21 final size:24
Alignment explanation
Indices: 7988339--7988386 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 24
7988329 TAATTATTAC
7988339 AAATTAAATTTT-AATTA-AT-TT
1 AAATTAAATTTTCAATTATATATT
*
7988360 AAA-TCAATTTTCAATTATATATT
1 AAATTAAATTTTCAATTATATATT
7988383 AAAT
1 AAAT
7988387 ATACTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 7 0.32
21 8 0.36
22 2 0.09
23 5 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
AAATTAAATTTTCAATTATATATT
Found at i:7988370 original size:20 final size:23
Alignment explanation
Indices: 7988345--7988386 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 23
7988335 TTACAAATTA
7988345 AATTTT-AATTA-AT-TTAAATC
1 AATTTTCAATTATATATTAAATC
7988365 AATTTTCAATTATATATTAAAT
1 AATTTTCAATTATATATTAAAT
7988387 ATACTAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 5 0.26
22 2 0.11
23 6 0.32
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (23 bp):
AATTTTCAATTATATATTAAATC
Found at i:7994907 original size:244 final size:242
Alignment explanation
Indices: 7994475--7994959 Score: 740
Period size: 244 Copynumber: 2.0 Consensus size: 242
7994465 AAGTTCCTTG
7994475 TTAGAAAACAACTTACATGAAATAGAAAACAAAAAATAACAAAAACAAGGAGAATTATTCCATTC
1 TTAGAAAACAACTTACATGAAATAGAAAACAAAAAATAACAAAAACAAGGAGAATTATTCCATTC
* * *
7994540 TAAAATAATAAAAAAAATCCCTAACAACTCGACAATTAGAATAGTGGAATAAATTAGAAGAGTAA
66 TAAAATAATAAAAAAAATCCCTAACAACTCGACAATCAGAATAGTGGAATAAATCAAAAGAGTAA
* * *
7994605 ATGAGAAATATTCCCAAAATAAATTAGGAAATCAAGTTGCAGTAATATGGGTGAATCAGATCTAT
131 ATGAGAAATATTCCCAAAACAAATTAGGAAATCAAGTTGCAGTAATATAGGAGAATCAGAT-TAT
*
7994670 -ACTAATGTAGGAGAATCGGATCAAGCTGCATTAATGTAGGAGAATTA
195 CACTAATGTAGGAGAATCAGATCAAGCTGCATTAATGTAGGAGAATTA
* * * * *
7994717 TTAGGAAACAACTTACATGAAATAGAAGACAAAAAATAATAAAAGCAAGGAGAATTATTCTATTC
1 TTAGAAAACAACTTACATGAAATAGAAAACAAAAAATAACAAAAACAAGGAGAATTATTCCATTC
* * * *
7994782 TAAAATAATAAAAAAAAAATCCCTGAA-AACTTGACAATCAGAATAGTTGACTAAATCAAAAGTG
66 TAAAATAAT--AAAAAAAATCCCT-AACAACTCGACAATCAGAATAGTGGAATAAATCAAAAGAG
* *
7994846 TAAATGAGAAATATTCCTAAAACAAATTAGGAAATCAAGTTGTAGTAATATAGGAGAATCAGATT
128 TAAATGAGAAATATTCCCAAAACAAATTAGGAAATCAAGTTGCAGTAATATAGGAGAATCAGATT
* *
7994911 TTCACTAATGTAGGAGAATCAGATCAAGCTGCATTAGTGTAGGAGAATT
193 ATCACTAATGTAGGAGAATCAGATCAAGCTGCATTAATGTAGGAGAATT
7994960 GGATCTCCAC
Statistics
Matches: 219, Mismatches: 20, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
242 69 0.32
243 2 0.01
244 146 0.67
245 2 0.01
ACGTcount: A:0.49, C:0.11, G:0.16, T:0.24
Consensus pattern (242 bp):
TTAGAAAACAACTTACATGAAATAGAAAACAAAAAATAACAAAAACAAGGAGAATTATTCCATTC
TAAAATAATAAAAAAAATCCCTAACAACTCGACAATCAGAATAGTGGAATAAATCAAAAGAGTAA
ATGAGAAATATTCCCAAAACAAATTAGGAAATCAAGTTGCAGTAATATAGGAGAATCAGATTATC
ACTAATGTAGGAGAATCAGATCAAGCTGCATTAATGTAGGAGAATTA
Found at i:8000983 original size:164 final size:163
Alignment explanation
Indices: 8000682--8000985 Score: 369
Period size: 164 Copynumber: 1.9 Consensus size: 163
8000672 TTTTTGTCAG
* * ***
8000682 AAATACCTTAAATAATTCTTTACAAAAAATTGAATAAGGTTATTCAAGGTATTTCTTGTCAAAAA
1 AAATACCTTAAATAATTCTTTACAAAAAATTGAATAAGGTTAATCAAGGCATTTCTAACCAAAAA
* * * * * * * *
8000747 TGCCTTTAATAATCTCATTTAATTTTTATAAGGTGATTATTCAAGGTGTTATTGGCAAAAAATAC
66 CGCCTTGAACAATCTCA-TAAACTTTTATAAGGGGATTATTCAAGGTGTTATTGACAAAAAACAC
8000812 ATTCAATAATCTATTTTAATTTTTTATTAGGCAA
130 ATTCAATAATCTATTTTAATTTTTTATTAGGCAA
* * * * *
8000846 AAATGCCTTGAATAATCTCTTTAGAAAAAATTGAATAGGGTTAATCAAGGCGTTTCTAACCAAAA
1 AAATACCTTAAATAAT-TCTTTACAAAAAATTGAATAAGGTTAATCAAGGCATTTCTAACCAAAA
* *
8000911 ACGCCTTGAACAATCCTCA-AAACTTTTATGAGGGGATTATTCAAGGTGTT-TATGACTAAAAAC
65 ACGCCTTGAACAAT-CTCATAAACTTTTATAAGGGGATTATTCAAGGTGTTAT-TGACAAAAAAC
*
8000974 ACCTTCAATAAT
128 ACATTCAATAAT
8000986 TCCCTTCAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
163 1 0.01
164 60 0.52
165 51 0.44
166 4 0.03
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36
Consensus pattern (163 bp):
AAATACCTTAAATAATTCTTTACAAAAAATTGAATAAGGTTAATCAAGGCATTTCTAACCAAAAA
CGCCTTGAACAATCTCATAAACTTTTATAAGGGGATTATTCAAGGTGTTATTGACAAAAAACACA
TTCAATAATCTATTTTAATTTTTTATTAGGCAA
Found at i:8008807 original size:122 final size:123
Alignment explanation
Indices: 8008530--8008862 Score: 272
Period size: 122 Copynumber: 2.7 Consensus size: 123
8008520 CCTAGTAAAA
* ** * * * *
8008530 AAAAATTG-AAGAAGATTATTGAAGGCATTTTGA-CCAAAAATA-TCTTGAATAACCCTATTCAA
1 AAAAATTGTAAG-AGATTATTCAATACATTTTTATCCAAAAACACT-TTTAATAACCCCATTCAA
* * *
8008592 TTTTTTTAAAGGAATATTCAAGGCATTTTTTTGGCCAAAACACCAAGAATAATCTACTCAT
64 TTTTTTTAAGGGATTATTCAAGGCA-GTTTTTGGCCAAAACACCAAGAATAATCTACTCAT
*
8008653 AAAAATTGTAAGAGATTATTCAATACATTTTTAGT-CAAAAACACTTTTAATAACCCCATTTAAT
1 AAAAATTGTAAGAGATTATTCAATACATTTTTA-TCCAAAAACACTTTTAATAACCCCATTCAAT
** ** *
8008717 TTTTTGTAAGGGATTATTCAAGGC-GTTTTT-GCCAAAAGGCCTTGAATAATC-CCGTCAT
65 TTTTT-TAAGGGATTATTCAAGGCAGTTTTTGGCCAAAACACCAAGAATAATCTAC-TCAT
* * * *** * *
8008775 AAAAATTG-AAGGGGATTATT-AA-AGATTGTTTTATCCAGAAATGTTTTTACTAACCTCATTCA
1 AAAAATTGTAA-GAGATTATTCAATACA-T-TTTTATCCAAAAACACTTTTAATAACCCCATTCA
8008837 ATTTTTTTCTAAAGGGATTATTCAAG
63 A-TTTTTT-T-AAGGGATTATTCAAG
8008863 TCAATTTTCA
Statistics
Matches: 172, Mismatches: 26, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
120 2 0.01
121 7 0.04
122 63 0.37
123 37 0.22
124 46 0.27
125 17 0.10
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (123 bp):
AAAAATTGTAAGAGATTATTCAATACATTTTTATCCAAAAACACTTTTAATAACCCCATTCAATT
TTTTTAAGGGATTATTCAAGGCAGTTTTTGGCCAAAACACCAAGAATAATCTACTCAT
Found at i:8009046 original size:65 final size:62
Alignment explanation
Indices: 8008948--8009131 Score: 142
Period size: 65 Copynumber: 2.9 Consensus size: 62
8008938 AAGAAAATTG
* * **
8008948 AAGGGGATTATTGAAGG-AGTTTTTAGCCCAAAATGTCTCTAATAATCTCCTTCAATTTTTACT-
1 AAGGAGATTATTCAAGGTA-TTTTTAGCAAAAAATGTCT-TAATAATCTCCTTCAATTTTT--TG
8009011 T
62 T
* ** * * *
8009012 AAAGGAGATTATTCAAGGTATTTTTAGCTAAAAATACCTAGAATAACCTCATTCAATTTTTTGT
1 -AAGGAGATTATTCAAGGTATTTTTAGCAAAAAATGTCT-TAATAATCTCCTTCAATTTTTTGT
* * * *
8009076 AA--AGATTATGCAAGGTGTTTTCTGGCAAAAAATGTCTTGAATAATCTCCTTTAATT
1 AAGGAGATTATTCAAGGTATTTT-TAGCAAAAAATGTCTT-AATAATCTCCTTCAATT
8009132 AAAAATTGGA
Statistics
Matches: 95, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
61 17 0.18
62 25 0.26
63 3 0.03
64 1 0.01
65 48 0.51
66 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (62 bp):
AAGGAGATTATTCAAGGTATTTTTAGCAAAAAATGTCTTAATAATCTCCTTCAATTTTTTGT
Found at i:8010063 original size:9 final size:9
Alignment explanation
Indices: 8010049--8010078 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
8010039 GATATTTTAT
8010049 TAATTAAAA
1 TAATTAAAA
8010058 TAATTAAAA
1 TAATTAAAA
8010067 TATATTAAAA
1 TA-ATTAAAA
8010077 TA
1 TA
8010079 TAAAAACTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAA
Found at i:8010075 original size:10 final size:10
Alignment explanation
Indices: 8010051--8010080 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8010041 TATTTTATTA
8010051 ATTAAAATA-
1 ATTAAAATAT
8010060 ATTAAAATAT
1 ATTAAAATAT
8010070 ATTAAAATAT
1 ATTAAAATAT
8010080 A
1 A
8010081 AAAACTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:8010133 original size:21 final size:21
Alignment explanation
Indices: 8010107--8010147 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8010097 CATGAGCTAT
8010107 TCGAATTAGG-TATAATAATAC
1 TCGAA-TAGGATATAATAATAC
*
8010128 TCGAATCGGATATAATAATA
1 TCGAATAGGATATAATAATA
8010148 ATCAAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.32
Consensus pattern (21 bp):
TCGAATAGGATATAATAATAC
Found at i:8011798 original size:20 final size:20
Alignment explanation
Indices: 8011775--8011840 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
8011765 AAAAATTTTG
8011775 AAAAAATTCAACAAAATTCT
1 AAAAAATTCAACAAAATTCT
8011795 AAAAAAAATTCAAC--AATTCT
1 --AAAAAATTCAACAAAATTCT
**
8011815 AAATGATTCAA-AATAATTCT
1 AAAAAATTCAACAA-AATTCT
8011835 AAAAAA
1 AAAAAA
8011841 ATTTGAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
18 9 0.24
20 16 0.43
22 12 0.32
ACGTcount: A:0.61, C:0.12, G:0.02, T:0.26
Consensus pattern (20 bp):
AAAAAATTCAACAAAATTCT
Found at i:8011800 original size:22 final size:22
Alignment explanation
Indices: 8011775--8011857 Score: 77
Period size: 22 Copynumber: 4.0 Consensus size: 22
8011765 AAAAATTTTG
8011775 AAAAAATTCAACAAAATTCTAA
1 AAAAAATTCAACAAAATTCTAA
8011797 AAAAAATTCAAC--AATTCT--
1 AAAAAATTCAACAAAATTCTAA
**
8011815 AAATGATTCAA-AATAATTCTAA
1 AAAAAATTCAACAA-AATTCTAA
* * *
8011837 AAAAATTTGAAAAAAATTCTA
1 AAAAAATTCAACAAAATTCTA
8011858 TACAATTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
18 9 0.18
20 12 0.24
22 26 0.53
23 2 0.04
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.28
Consensus pattern (22 bp):
AAAAAATTCAACAAAATTCTAA
Found at i:8011843 original size:11 final size:11
Alignment explanation
Indices: 8011765--8011857 Score: 56
Period size: 11 Copynumber: 8.9 Consensus size: 11
8011755 TAAAAAAAAT
* *
8011765 AAAAATTTTGA
1 AAAAATTCTAA
8011776 AAAAATTC-AA
1 AAAAATTCTAA
*
8011786 CAAAATTCTAAA
1 AAAAATTCT-AA
8011798 AAAAATTC---
1 AAAAATTCTAA
*
8011806 AACAATTCT-A
1 AAAAATTCTAA
**
8011816 AATGATTC-AA
1 AAAAATTCTAA
*
8011826 AATAATTCTAA
1 AAAAATTCTAA
8011837 AAAAATT-TGAA
1 AAAAATTCT-AA
8011848 AAAAATTCTA
1 AAAAATTCTA
8011858 TACAATTTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
8 7 0.11
10 23 0.35
11 25 0.38
12 10 0.15
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (11 bp):
AAAAATTCTAA
Found at i:8012032 original size:17 final size:18
Alignment explanation
Indices: 8011993--8012040 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
8011983 CTACAAAATT
8011993 TTAAAATATTAAATTTTA
1 TTAAAATATTAAATTTTA
* *
8012011 ATAAAA-ATTAAATTTTC
1 TTAAAATATTAAATTTTA
*
8012028 TTAAAATTTTAAA
1 TTAAAATATTAAA
8012041 ACANNNNNNN
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
TTAAAATATTAAATTTTA
Found at i:8013146 original size:20 final size:20
Alignment explanation
Indices: 8013121--8013226 Score: 74
Period size: 22 Copynumber: 5.1 Consensus size: 20
8013111 TAGCAAAAAT
8013121 AATCATGCAAATAAATAATA
1 AATCATGCAAATAAATAATA
* *
8013141 AATCATGCAAATGATTAAT-
1 AATCATGCAAATAAATAATA
* *
8013160 AATTATGAAAAAATAAATTAAT-
1 AATCATG--CAAATAAA-TAATA
*
8013182 AATCATGCAAA-AAATAAAAAAA
1 AATCATGCAAATAAAT---AATA
*
8013204 AATCATGCAAATGAAATTATA
1 AATCATGCAAAT-AAATAATA
8013225 AA
1 AA
8013227 CAAAACATGC
Statistics
Matches: 66, Mismatches: 11, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
18 1 0.02
19 9 0.14
20 20 0.30
21 11 0.17
22 21 0.32
24 4 0.06
ACGTcount: A:0.60, C:0.08, G:0.07, T:0.25
Consensus pattern (20 bp):
AATCATGCAAATAAATAATA
Found at i:8013181 original size:22 final size:23
Alignment explanation
Indices: 8013154--8013214 Score: 81
Period size: 22 Copynumber: 2.7 Consensus size: 23
8013144 CATGCAAATG
*
8013154 ATTAATAATTATG-AAAAAATAA
1 ATTAATAATCATGCAAAAAATAA
8013176 ATTAATAATCATGCAAAAAATAA
1 ATTAATAATCATGCAAAAAATAA
* *
8013199 A-AAAAAATCATGCAAA
1 ATTAATAATCATGCAAA
8013215 TGAAATTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 25 0.71
23 10 0.29
ACGTcount: A:0.64, C:0.07, G:0.05, T:0.25
Consensus pattern (23 bp):
ATTAATAATCATGCAAAAAATAA
Found at i:8013371 original size:25 final size:25
Alignment explanation
Indices: 8013341--8013390 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
8013331 TATACAAATC
*
8013341 AAAATAA-ATAA-AAT-CAAAATGA
1 AAAATAATATAATAATAAAAAATGA
8013363 AAAATAATATAATAATAAAAAATGA
1 AAAATAATATAATAATAAAAAATGA
8013388 AAA
1 AAA
8013391 CTTGCTATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 7 0.29
23 4 0.17
24 3 0.12
25 10 0.42
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (25 bp):
AAAATAATATAATAATAAAAAATGA
Found at i:8014817 original size:25 final size:25
Alignment explanation
Indices: 8014787--8014836 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
8014777 AATCATACCC
8014787 AAATCATGCAA-AGATCATAAAAAAA
1 AAATCATGCAACA-ATCATAAAAAAA
*
8014812 AAATCATGCAACAATCATACAAAAA
1 AAATCATGCAACAATCATAAAAAAA
8014837 CATGATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.62, C:0.16, G:0.06, T:0.16
Consensus pattern (25 bp):
AAATCATGCAACAATCATAAAAAAA
Found at i:8014866 original size:37 final size:34
Alignment explanation
Indices: 8014824--8014891 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
8014814 ATCATGCAAC
8014824 AATCATACAAAAACATGATAATAAATCAAGCAAAAAT
1 AATCATACAAAAA-A--ATAATAAATCAAGCAAAAAT
* * *
8014861 AATCATGCAAATAAATAATAAATCATGCAAA
1 AATCATACAAAAAAATAATAAATCAAGCAAA
8014892 TAGATTAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 16 0.57
36 1 0.04
37 11 0.39
ACGTcount: A:0.60, C:0.13, G:0.06, T:0.21
Consensus pattern (34 bp):
AATCATACAAAAAAATAATAAATCAAGCAAAAAT
Found at i:8014886 original size:20 final size:19
Alignment explanation
Indices: 8014858--8014937 Score: 88
Period size: 20 Copynumber: 3.9 Consensus size: 19
8014848 ATCAAGCAAA
8014858 AATAATCATGCAAATAAAT
1 AATAATCATGCAAATAAAT
*
8014877 AATAAATCATGCAAATAGATT
1 AAT-AATCATGCAAATA-AAT
* *
8014898 AATAATTATGAAAAAATAAATT
1 AATAATCATG--CAAATAAA-T
8014920 AATAATCATGCAAATAAA
1 AATAATCATGCAAATAAA
8014938 ATCATAAACA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
19 3 0.06
20 26 0.52
21 6 0.12
22 15 0.30
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (19 bp):
AATAATCATGCAAATAAAT
Found at i:8014939 original size:25 final size:22
Alignment explanation
Indices: 8014869--8014929 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
8014859 ATAATCATGC
*
8014869 AAATAAA-TAATAAATCATG--C
1 AAATAAATTAAT-AATCATGAAA
* *
8014889 AAATAGATTAATAATTATGAAA
1 AAATAAATTAATAATCATGAAA
8014911 AAATAAATTAATAATCATG
1 AAATAAATTAATAATCATG
8014930 CAAATAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 12 0.36
21 4 0.12
22 17 0.52
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (22 bp):
AAATAAATTAATAATCATGAAA
Found at i:8015993 original size:15 final size:15
Alignment explanation
Indices: 8015960--8015993 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8015950 AAATCCCACA
*
8015960 TTTTTTATTTCTGAT
1 TTTTTTATTTCTGAC
*
8015975 TTTTTTATTTTTGAC
1 TTTTTTATTTCTGAC
8015990 TTTT
1 TTTT
8015994 GACTTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTTTATTTCTGAC
Found at i:8016777 original size:14 final size:14
Alignment explanation
Indices: 8016755--8016799 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
8016745 AACTATAATA
* *
8016755 AATGCAATGAATGT
1 AATGTAATGAATGC
8016769 AATGTAATGAATGC
1 AATGTAATGAATGC
*
8016783 AATGTAATGCATGC
1 AATGTAATGAATGC
8016797 AAT
1 AAT
8016800 ACAATTCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (14 bp):
AATGTAATGAATGC
Found at i:8016786 original size:19 final size:19
Alignment explanation
Indices: 8016755--8016791 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8016745 AACTATAATA
8016755 AATGCAATGAATGTAATGT
1 AATGCAATGAATGTAATGT
8016774 AATG-AATGCAATGTAATG
1 AATGCAATG-AATGTAATG
8016792 CATGCAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.30
Consensus pattern (19 bp):
AATGCAATGAATGTAATGT
Found at i:8024072 original size:60 final size:59
Alignment explanation
Indices: 8023920--8024134 Score: 226
Period size: 59 Copynumber: 3.6 Consensus size: 59
8023910 TGGCTTCCTT
* *
8023920 AAATATTTTCAAGG-AAAAGTT-AAAAGTATCAATTTTTCTTGAAAATAAGTTTTC-AAAA
1 AAATATTTT-TAGGAAAAAGTTGAAAA-TATCAATTTTTCTTGAAAATAAGCTTTCAAAAA
* * * * *
8023978 AGAGATTTTT-GAGAAAAAGTTGAAAGTATAAATTTTTC-TCAAAATTAAAG-TTTCAAAAA
1 AAATATTTTTAG-GAAAAAGTTGAAAATATCAATTTTTCTTGAAAA-T-AAGCTTTCAAAAA
* * *
8024037 AATATATTTTTAGGAAGAAGTTGAAAATATCAATTTTCCTTGAAAATAAGCTTTCTAAAA
1 AA-ATATTTTTAGGAAAAAGTTGAAAATATCAATTTTTCTTGAAAATAAGCTTTCAAAAA
* *
8024097 AAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
1 AAATATTTTTAGGAAAAAGTTGAAAATATCAATTTTTC
8024135 CTGCACAAAA
Statistics
Matches: 129, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
56 1 0.01
57 6 0.05
58 30 0.23
59 46 0.36
60 40 0.31
61 6 0.05
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (59 bp):
AAATATTTTTAGGAAAAAGTTGAAAATATCAATTTTTCTTGAAAATAAGCTTTCAAAAA
Found at i:8024146 original size:118 final size:117
Alignment explanation
Indices: 8023922--8024134 Score: 313
Period size: 119 Copynumber: 1.8 Consensus size: 117
8023912 GCTTCCTTAA
* * *
8023922 ATATTTTCAAGGAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGTTTTCAAAAAGAGATTTT
1 ATATTTTCAAGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATAAGCTTTCAAAAAAAGATTTT
*
8023987 TGAGAAAAAGTTGAAAGTATAAATTTTTCTCAAAATTAAAGTTTCAAAAAAAT
66 TAAGAAAAAGTTGAAAGTATAAATTTTTCTCAAAA-TAAAGTTTCAAAAAAAT
* *
8024040 ATATTTT-TAGGAAGAAGTTGAAAA-TATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAAATAT
1 ATATTTTCAAGGAA-AAGTT-AAAAGTATCAATTTTCCTTGAAAATAAGCTTTC-AAAAAAAGAT
*
8024103 TTTTAAGAAAAAGTTGAAAGTATCAATTTTTC
63 TTTTAAGAAAAAGTTGAAAGTATAAATTTTTC
8024135 CTGCACAAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
117 5 0.06
118 38 0.45
119 42 0.49
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.37
Consensus pattern (117 bp):
ATATTTTCAAGGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATAAGCTTTCAAAAAAAGATTTT
TAAGAAAAAGTTGAAAGTATAAATTTTTCTCAAAATAAAGTTTCAAAAAAAT
Found at i:8028116 original size:30 final size:30
Alignment explanation
Indices: 8028082--8028187 Score: 98
Period size: 28 Copynumber: 3.7 Consensus size: 30
8028072 TATCAACAAT
*
8028082 TGATGAAAAATGAGAAAAAAGAAAAGAATA
1 TGATGAAAAATGAGAAAAAAGAAAAAAATA
*
8028112 TGATGAAAAAATGA-AAAAATGAAAAAAATA
1 TGATG-AAAAATGAGAAAAAAGAAAAAAATA
** *
8028142 -GA-GAAAAAAAAGAAAAAA-AAAGAAAAAA
1 TGATGAAAAATGAGAAAAAAGAAA-AAAATA
*
8028170 TGA-G-AAAATGAAAAAAAA
1 TGATGAAAAATGAGAAAAAA
8028188 AAGATTCAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
27 9 0.14
28 22 0.35
29 5 0.08
30 19 0.30
31 8 0.13
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.10
Consensus pattern (30 bp):
TGATGAAAAATGAGAAAAAAGAAAAAAATA
Found at i:8028136 original size:7 final size:8
Alignment explanation
Indices: 8028114--8028185 Score: 64
Period size: 8 Copynumber: 9.1 Consensus size: 8
8028104 AAAGAATATG
8028114 ATGAAAAA
1 ATGAAAAA
8028122 ATGAAAAA
1 ATGAAAAA
8028130 ATGAAAAAA
1 ATG-AAAAA
8028139 ATAGAGAAAA
1 AT-GA-AAAA
8028149 A--AAAGAA
1 ATGAAA-AA
8028156 A--AAAAA
1 ATGAAAAA
8028162 A-GAAAAA
1 ATGAAAAA
*
8028169 ATGAGAAA
1 ATGAAAAA
8028177 ATGAAAAA
1 ATGAAAAA
8028185 A
1 A
8028186 AAAAGATTCA
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
6 5 0.09
7 13 0.23
8 24 0.43
9 8 0.14
10 6 0.11
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (8 bp):
ATGAAAAA
Found at i:8028963 original size:63 final size:63
Alignment explanation
Indices: 8028882--8029001 Score: 186
Period size: 63 Copynumber: 1.9 Consensus size: 63
8028872 TGGTGCTGAA
* * ** *
8028882 AAGCTTATGAATGGTGACCAAGTGACAGATTATGAAATTTGTTTTGAAATGGTTAGTATTGAG
1 AAGCTTATGAATGATGACCAAGTGACAAAACATGAAATTTATTTTGAAATGGTTAGTATTGAG
*
8028945 AAGCTTATGAATGATGACCAAGTGATAAAACATGAAATTTATTTTGAAATGGTTAGT
1 AAGCTTATGAATGATGACCAAGTGACAAAACATGAAATTTATTTTGAAATGGTTAGT
8029002 GATGATAAGC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 51 1.00
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.34
Consensus pattern (63 bp):
AAGCTTATGAATGATGACCAAGTGACAAAACATGAAATTTATTTTGAAATGGTTAGTATTGAG
Found at i:8030107 original size:40 final size:40
Alignment explanation
Indices: 8030016--8030189 Score: 172
Period size: 40 Copynumber: 4.3 Consensus size: 40
8030006 ATGATTGTTA
* * * *
8030016 AGGAGTAATTTATTTTCAAAGTCGTGGTTGCATCTATTTAG
1 AGGAGCAATTTACTTTCAAAGTTGTGG-TGCCTCTATTTAG
*
8030057 AGGAGCAATTTACTTTCAAAGTTGTGGCGCCTCTATTTAG
1 AGGAGCAATTTACTTTCAAAGTTGTGGTGCCTCTATTTAG
* * ** * * *
8030097 AAGAGTAATTTACTTTCCAAAAGTTACGGTGCCTTTGTTTAT
1 AGGAGCAATTTACTTT-C-AAAGTTGTGGTGCCTCTATTTAG
*
8030139 AGGAGCAATTTACTTTTC-AATTTGTGGTGCCTCTATTTAG
1 AGGAGCAATTTAC-TTTCAAAGTTGTGGTGCCTCTATTTAG
*
8030179 ATGAGC-ATTTA
1 AGGAGCAATTTA
8030190 TTTTTGAAGT
Statistics
Matches: 108, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 5 0.05
40 46 0.43
41 25 0.23
42 29 0.27
43 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (40 bp):
AGGAGCAATTTACTTTCAAAGTTGTGGTGCCTCTATTTAG
Found at i:8030329 original size:65 final size:65
Alignment explanation
Indices: 8030226--8030348 Score: 194
Period size: 65 Copynumber: 1.9 Consensus size: 65
8030216 AGAGAATTTG
* * *
8030226 TTTATTTTTTCAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTTC-AAAGTCGTTGCCA
1 TTTATTTTTTAAAGTCATTGAGCCTCTGATTAGAGGAGCAATTTATTTTTCTAAAGTCGTTGCCA
*
8030290 TTTATTTTTCTAAAGTCATTGAGCCTCTGTTTAGAGGAGCAATTTATTTTTCTAAAGTC
1 TTTATTTTT-TAAAGTCATTGAGCCTCTGATTAGAGGAGCAATTTATTTTTCTAAAGTC
8030349 ATTAAGCCTC
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 9 0.17
65 38 0.72
66 6 0.11
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (65 bp):
TTTATTTTTTAAAGTCATTGAGCCTCTGATTAGAGGAGCAATTTATTTTTCTAAAGTCGTTGCCA
Found at i:8030348 original size:42 final size:42
Alignment explanation
Indices: 8030289--8030458 Score: 207
Period size: 42 Copynumber: 4.0 Consensus size: 42
8030279 AGTCGTTGCC
* *
8030289 ATTTATTTTTCTAAAGTCATTGAGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCTAAAGTCATTAAGCCTCTGTTTAGAGGAGCT
8030331 ATTTATTTTTCTAAAGTCATTAAGCCTCT-TATTAGAGGAGCT
1 ATTTATTTTTCTAAAGTCATTAAGCCTCTGT-TTAGAGGAGCT
* ** * *
8030373 ATTTATTTTTCAAAAGTTGTTAAGCCTCTGATTAGAGGAGTTTT
1 ATTTATTTTTCTAAAGTCATTAAGCCTCTGTTTAGAGGAG--CT
* * * *
8030417 ATTTATTTTTCCAAAATCATTAAGCCTCTGCTTAAAGGAGCT
1 ATTTATTTTTCTAAAGTCATTAAGCCTCTGTTTAGAGGAGCT
8030459 TTGATCAAAA
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
42 74 0.67
44 35 0.32
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (42 bp):
ATTTATTTTTCTAAAGTCATTAAGCCTCTGTTTAGAGGAGCT
Found at i:8030502 original size:9 final size:9
Alignment explanation
Indices: 8030476--8030547 Score: 51
Period size: 9 Copynumber: 8.0 Consensus size: 9
8030466 AAATTTTAAC
8030476 AAACATAAAA
1 AAACA-AAAA
8030486 AAAC-AAAA
1 AAACAAAAA
*
8030494 ACA-AAAAA
1 AAACAAAAA
*
8030502 AAACACAAA
1 AAACAAAAA
* *
8030511 AAAGAAGAA
1 AAACAAAAA
*
8030520 AAAGAAGAAA
1 AAACAA-AAA
8030530 AAACAAAAA
1 AAACAAAAA
8030539 CAAA-AAAAA
1 -AAACAAAAA
8030548 TGTCAAGTTG
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
8 12 0.24
9 24 0.48
10 14 0.28
ACGTcount: A:0.83, C:0.10, G:0.06, T:0.01
Consensus pattern (9 bp):
AAACAAAAA
Found at i:8030509 original size:12 final size:13
Alignment explanation
Indices: 8030483--8030544 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 13
8030473 AACAAACATA
8030483 AAAAAACAAAAAC
1 AAAAAACAAAAAC
*
8030496 AAAAAA-AAACAC
1 AAAAAACAAAAAC
*
8030508 AAAAAAGAAGAAA-
1 AAAAAACAA-AAAC
*
8030521 AAGAAGA-AAAAAC
1 AA-AAAACAAAAAC
8030534 -AAAAACAAAAA
1 AAAAAACAAAAA
8030545 AAATGTCAAG
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
11 3 0.08
12 20 0.50
13 12 0.30
14 5 0.12
ACGTcount: A:0.84, C:0.10, G:0.06, T:0.00
Consensus pattern (13 bp):
AAAAAACAAAAAC
Found at i:8030522 original size:28 final size:26
Alignment explanation
Indices: 8030476--8030547 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 26
8030466 AAATTTTAAC
*
8030476 AAACATAAAAAAACAAAAACAAAAAA
1 AAACAAAAAAAAACAAAAACAAAAAA
* * *
8030502 AAACACAAAAAAGAAGAAAAAGAAGAAA
1 AAACA-AAAAAA-AACAAAAACAAAAAA
*
8030530 AAACAAAAACAAA-AAAAA
1 AAACAAAAAAAAACAAAAA
8030548 TGTCAAGTTG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
25 5 0.13
26 7 0.18
27 10 0.26
28 17 0.44
ACGTcount: A:0.83, C:0.10, G:0.06, T:0.01
Consensus pattern (26 bp):
AAACAAAAAAAAACAAAAACAAAAAA
Found at i:8033765 original size:58 final size:61
Alignment explanation
Indices: 8033675--8033826 Score: 222
Period size: 60 Copynumber: 2.6 Consensus size: 61
8033665 TTCCTTGAAT
* *
8033675 ATTTTCGAAAAAAAGTTGAAAGTATCAATTTTTCTT-AAAAAT-AAGTTTT-TAAAAAAAG
1 ATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTCAAAAATAAAGTTTTAAAAAAAAAG
* * *
8033733 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTT-TTCAAAATTAAAGTTTTAAAAAAAAAT
1 ATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTCAAAAATAAAGTTTTAAAAAAAAAG
*
8033793 ATTTTTGAAAAAAAATTGAAAGTATCAATTTTTC
1 ATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTC
8033827 CTACACAAAG
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
57 2 0.02
58 36 0.43
59 7 0.08
60 38 0.46
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (61 bp):
ATTTTTGAAAAAAAGTTGAAAGTATCAATTTTTCTTCAAAAATAAAGTTTTAAAAAAAAAG
Found at i:8038416 original size:29 final size:29
Alignment explanation
Indices: 8038367--8038434 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 29
8038357 ATTTTGATAA
* *
8038367 AAATTAAAGTTTAAGGGCTTATTTAGGTGC
1 AAATAAAAG-TTAAGGACTTATTTAGGTGC
8038397 AAATAAAAGTTAAGGACTTATTTAGGTGC
1 AAATAAAAGTTAAGGACTTATTTAGGTGC
8038426 -AATAAAAGT
1 AAATAAAAGT
8038435 ATAGGGGCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 9 0.25
29 19 0.53
30 8 0.22
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.32
Consensus pattern (29 bp):
AAATAAAAGTTAAGGACTTATTTAGGTGC
Found at i:8038445 original size:29 final size:29
Alignment explanation
Indices: 8038325--8038446 Score: 111
Period size: 30 Copynumber: 4.1 Consensus size: 29
8038315 TGTTAAATGT
* * * *
8038325 TTATTTAGTTACAAATTAAAGGTTAAGTGC
1 TTATTTAGGTGCAAA-TAAAAGTTAAGGGC
* * ** *
8038355 TTATTTTGATAAAAATTAAAGTTTAAGGGC
1 TTATTTAGGTGCAAATAAAAG-TTAAGGGC
*
8038385 TTATTTAGGTGCAAATAAAAGTTAAGGAC
1 TTATTTAGGTGCAAATAAAAGTTAAGGGC
*
8038414 TTATTTAGGTGC-AATAAAAGTATAGGGGC
1 TTATTTAGGTGCAAATAAAAGT-TAAGGGC
8038443 TTAT
1 TTAT
8038447 CTAAATAAAG
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
28 9 0.12
29 32 0.42
30 35 0.46
ACGTcount: A:0.38, C:0.06, G:0.20, T:0.37
Consensus pattern (29 bp):
TTATTTAGGTGCAAATAAAAGTTAAGGGC
Found at i:8040455 original size:2 final size:2
Alignment explanation
Indices: 8040448--8040479 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8040438 TGCCCAAGTA
8040448 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8040480 GTGTGTGCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8043099 original size:6 final size:7
Alignment explanation
Indices: 8043082--8043108 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8043072 TGGTTCTCTA
8043082 AAAAAAG
1 AAAAAAG
8043089 AAAAAAG
1 AAAAAAG
8043096 AAAAAAG
1 AAAAAAG
8043103 AAAAAA
1 AAAAAA
8043109 ACAAAGATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:8043767 original size:23 final size:24
Alignment explanation
Indices: 8043724--8043768 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8043714 ATTGTTAAAC
*
8043724 TTTAAAAAAAGTATAATTACTTTT
1 TTTAAAAAAAGTATAAATACTTTT
*
8043748 TTTAAAAAAATTA-AAATACTT
1 TTTAAAAAAAGTATAAATACTT
8043769 ATAAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (24 bp):
TTTAAAAAAAGTATAAATACTTTT
Found at i:8045909 original size:14 final size:14
Alignment explanation
Indices: 8045871--8045909 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
8045861 ACGTGATAGG
8045871 ATACATATATACAT
1 ATACATATATACAT
* *
8045885 ATAAATGTATACAT
1 ATACATATATACAT
8045899 ATACATATATA
1 ATACATATATA
8045910 TAAATTGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (14 bp):
ATACATATATACAT
Found at i:8048664 original size:112 final size:115
Alignment explanation
Indices: 8048459--8048686 Score: 417
Period size: 112 Copynumber: 2.0 Consensus size: 115
8048449 ACAGGCTATA
8048459 GGTAACAATAATTAAGGGAAACAAAAAAAAGAAAAAAAGGAGAGAGAGAAAGTAGGAAAGAGAGG
1 GGTAACAATAATTAAGGGAAACAAAAAAAAGAAAAAAAGGAGAGAGAGAAAGTAGGAAAGAGAGG
8048524 CTTATTGGCTTGTCAGTTTTAGATGGGATAGAAAGCTGACGAGGATGTAC
66 CTTATTGGCTTGTCAGTTTTAGATGGGATAGAAAGCTGACGAGGATGTAC
*
8048574 GGTAA-AATAATTAAGGGAAAC-AAAAAGAGAAAAAAA-GAGAGAGAGAAAGTAGGAAAGAGAGG
1 GGTAACAATAATTAAGGGAAACAAAAAAAAGAAAAAAAGGAGAGAGAGAAAGTAGGAAAGAGAGG
*
8048636 CTTATTGGCTTGTCAGTTTTAGATGGGATCGAAAGCTGACGAGGATGTAC
66 CTTATTGGCTTGTCAGTTTTAGATGGGATAGAAAGCTGACGAGGATGTAC
8048686 G
1 G
8048687 ATAAGACGAG
Statistics
Matches: 111, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
112 76 0.68
113 14 0.13
114 16 0.14
115 5 0.05
ACGTcount: A:0.44, C:0.07, G:0.30, T:0.18
Consensus pattern (115 bp):
GGTAACAATAATTAAGGGAAACAAAAAAAAGAAAAAAAGGAGAGAGAGAAAGTAGGAAAGAGAGG
CTTATTGGCTTGTCAGTTTTAGATGGGATAGAAAGCTGACGAGGATGTAC
Found at i:8054545 original size:61 final size:60
Alignment explanation
Indices: 8054480--8054668 Score: 163
Period size: 61 Copynumber: 3.1 Consensus size: 60
8054470 TTTCTAGCCC
*
8054480 AAAATGCTTTTGATAATCCCTTTCAATTTTTTTTAAGGATTATTCAAGGTATTTTTAGCTA
1 AAAATGCTTTTGATAATCCCTTTCAATTTTTTTTAGGGATTATTCAAGGTATTTTT-GCTA
** * *
8054541 AAAATGCTTTCAATAATCTTCTTT-AATTTTTTTT-GGGATTATTATTCAAGGTTTTTTTTTG-T
1 AAAATGCTTTTGATAATC-CCTTTCAATTTTTTTTAGGG---ATTATTCAAGG--TATTTTTGCT
8054603 CA
60 -A
* * * * *
8054605 AAAGTGC-CTTGAATAATCCCCTCCAA-TTTTTTTAGGGATTATTTAAGGTATTTTTGCTTA
1 AAAATGCTTTTG-ATAATCCCTTTCAATTTTTTTTAGGGATTATTCAAGGTATTTTTGC-TA
8054665 AAAA
1 AAAA
8054669 CGCCTTAAAT
Statistics
Matches: 101, Mismatches: 15, Indels: 25
0.72 0.11 0.18
Matches are distributed among these distances:
59 7 0.07
60 6 0.06
61 37 0.37
62 4 0.04
63 22 0.22
64 19 0.19
65 6 0.06
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.48
Consensus pattern (60 bp):
AAAATGCTTTTGATAATCCCTTTCAATTTTTTTTAGGGATTATTCAAGGTATTTTTGCTA
Found at i:8054591 original size:124 final size:124
Alignment explanation
Indices: 8054458--8054683 Score: 271
Period size: 124 Copynumber: 1.8 Consensus size: 124
8054448 TTGAATGGGG
* * *
8054458 TTATTCAAGG-CGTTTCTAGCCCAAAA-TGCTTTTG-ATAATCCCTTTCAATTTTTTTTAAGGAT
1 TTATTCAAGGTCGTTTCTAG-CCAAAAGTGC-CTTGAATAATCCCCTCCAA-TTTTTTTAAGGAT
* * *
8054520 TATTCAAGGTATTTTTAGC-TAAAAATGCTTTCAATAATCTTCTTTAATTTTTTTTGGGATTA
63 TATTCAAGGTATTTTT-GCTTAAAAACGCCTTAAATAATCTTCTTTAATTTTTTTTGGGATTA
** * * * *
8054582 TTATTCAAGGTTTTTTTTTGTCAAAAGTGCCTTGAATAATCCCCTCCAATTTTTTTAGGGATTAT
1 TTATTCAAGGTCGTTTCTAGCCAAAAGTGCCTTGAATAATCCCCTCCAATTTTTTTAAGGATTAT
*
8054647 TTAAGGTATTTTTGCTTAAAAACGCCTTAAATAATCT
66 TCAAGGTATTTTTGCTTAAAAACGCCTTAAATAATCT
8054684 CTTACAAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
123 2 0.02
124 63 0.74
125 20 0.24
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46
Consensus pattern (124 bp):
TTATTCAAGGTCGTTTCTAGCCAAAAGTGCCTTGAATAATCCCCTCCAATTTTTTTAAGGATTAT
TCAAGGTATTTTTGCTTAAAAACGCCTTAAATAATCTTCTTTAATTTTTTTTGGGATTA
Found at i:8070844 original size:31 final size:31
Alignment explanation
Indices: 8070774--8070853 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 31
8070764 CCTCAACCAT
* * ** *
8070774 GCTTTGATATCACTTATTGGGGATTATGATA
1 GCTTTGATATCACTTGTTGGGGATCACCACA
*
8070805 G-TTCTGATATCATTTGTTGGGGATCACCACA
1 GCTT-TGATATCACTTGTTGGGGATCACCACA
*
8070836 GCTTTGATACCACTTGTT
1 GCTTTGATATCACTTGTT
8070854 AGATAAAATG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
30 2 0.05
31 35 0.90
32 2 0.05
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (31 bp):
GCTTTGATATCACTTGTTGGGGATCACCACA
Found at i:8071794 original size:56 final size:55
Alignment explanation
Indices: 8071686--8071838 Score: 202
Period size: 56 Copynumber: 2.8 Consensus size: 55
8071676 GCTTAAAGCC
* * * *
8071686 CATCAATATAGATTTGTATGTTTTAATTTTCTTACCTATACCGACAGCTAGCACT
1 CATCAGTATAGACTTATATGTTTTAATTTTCTTACCTATACTGACAGCTAGCACT
*
8071741 -AGTCAGTATAGACTTATATGTTTTAATTTTTCTTACCTATACTGACA-CTTAGCATT
1 CA-TCAGTATAGACTTATATGTTTTAA-TTTTCTTACCTATACTGACAGC-TAGCACT
* *
8071797 CATTAGTATAGACTTATATATTTTAATTTTCTTACCTATACT
1 CATCAGTATAGACTTATATGTTTTAATTTTCTTACCTATACT
8071839 AATGGTTAGA
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
54 1 0.01
55 38 0.44
56 47 0.54
57 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.44
Consensus pattern (55 bp):
CATCAGTATAGACTTATATGTTTTAATTTTCTTACCTATACTGACAGCTAGCACT
Found at i:8071860 original size:55 final size:55
Alignment explanation
Indices: 8071692--8071936 Score: 237
Period size: 55 Copynumber: 4.4 Consensus size: 55
8071682 AGCCCATCAA
* * * * * * * *
8071692 TATAGATTTGTATGTTTTAATTTTCTTACCTATACCGACAGCTAGCA-CTAGTCAG
1 TATAGACTTATATATTTTAATTTTCTTACCTATACTGACGGTTAG-AGATTGTCAG
* ** * * *
8071747 TATAGACTTATATGTTTTAATTTTTCTTACCTATACTGACACTTAG-CATTCATTAG
1 TATAGACTTATATATTTTAA-TTTTCTTACCTATACTGACGGTTAGAGATT-GTCAG
* *
8071803 TATAGACTTATATATTTTAATTTTCTTACCTATACTAATGGTTAGAGATTGTCAG
1 TATAGACTTATATATTTTAATTTTCTTACCTATACTGACGGTTAGAGATTGTCAG
* * * *
8071858 TATATAATTGTATCA-TTTAATTTTCTTACCTATA-TCGACGGTTAGAGATTGTCAA
1 TATAGACTTATAT-ATTTTAATTTTCTTACCTATACT-GACGGTTAGAGATTGTCAG
8071913 TATAGACTTATATATTTTAATTTT
1 TATAGACTTATATATTTTAATTTT
8071937 TGTTATATTT
Statistics
Matches: 157, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
54 2 0.01
55 107 0.68
56 48 0.31
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.45
Consensus pattern (55 bp):
TATAGACTTATATATTTTAATTTTCTTACCTATACTGACGGTTAGAGATTGTCAG
Found at i:8072243 original size:15 final size:15
Alignment explanation
Indices: 8072219--8072254 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8072209 TATCAAGTTT
*
8072219 GATAAAACAAACATC
1 GATAAAACAAACATA
*
8072234 GATAACACAAACATA
1 GATAAAACAAACATA
8072249 GATAAA
1 GATAAA
8072255 GAGTTACACT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.17, G:0.08, T:0.14
Consensus pattern (15 bp):
GATAAAACAAACATA
Found at i:8072887 original size:68 final size:67
Alignment explanation
Indices: 8072757--8072888 Score: 174
Period size: 68 Copynumber: 2.0 Consensus size: 67
8072747 TATATACAGA
* * * * * *
8072757 AGATAAAAAAGTAATCATCCATTCATATTCCAGTAGAAATAATTTTATAAATATCTTTTTCATTC
1 AGATAAAAAAGTAATCATCCATTCATATACCAGCAAAAATAATTTTATAAACATCCTATTCATTC
8072822 AT
66 AT
* * *
8072824 AGATACAAAAGGTAATCATCCATTTATATACTAGCAAAAATAATTTTATAAACATCCTATTCATT
1 AGATA-AAAAAGTAATCATCCATTCATATACCAGCAAAAATAATTTTATAAACATCCTATTCATT
8072889 AGTGTAATGC
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
67 5 0.09
68 50 0.91
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.36
Consensus pattern (67 bp):
AGATAAAAAAGTAATCATCCATTCATATACCAGCAAAAATAATTTTATAAACATCCTATTCATTC
AT
Found at i:8074670 original size:30 final size:31
Alignment explanation
Indices: 8074634--8074698 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
8074624 CTAGCAACTA
* *
8074634 AAACAATTATATATAATGTAAACAA-TATAT
1 AAACAATTATATATAATCTAAACAATTACAT
8074664 AAACAATTATATATAATCTAAACAATTACAT
1 AAACAATTATATATAATCTAAACAATTACAT
8074695 AAAC
1 AAAC
8074699 CTTATTATGC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.75
31 8 0.25
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.31
Consensus pattern (31 bp):
AAACAATTATATATAATCTAAACAATTACAT
Found at i:8074898 original size:19 final size:19
Alignment explanation
Indices: 8074837--8074901 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
8074827 AAGCCAAACA
8074837 ATAAACAATTATATATAAT
1 ATAAACAATTATATATAAT
* *
8074856 CTAAA-AAATATATA-AAT
1 ATAAACAATTATATATAAT
*
8074873 AACAAACAATTATATATAAT
1 -ATAAACAATTATATATAAT
8074893 ATAAACAAT
1 ATAAACAAT
8074902 ATGTAAACAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
17 3 0.08
18 11 0.30
19 20 0.54
20 3 0.08
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAAACAATTATATATAAT
Found at i:8075195 original size:86 final size:85
Alignment explanation
Indices: 8075008--8075178 Score: 263
Period size: 86 Copynumber: 2.0 Consensus size: 85
8074998 TGACACCACC
* *
8075008 TTAAATCACATTTTTATTATAAATAATTAATTAACTTACTTAAAAATATTGATATATATATATTT
1 TTAAATCAAATTTTTATTATAAACAATTAATTAACTTACTTAAAAATATTGA-ATATATATATTT
8075073 GTCAATAGATAATAAATTCTA
65 GTCAATAGATAATAAATTCTA
* *
8075094 TTAAATCAAATTTTTATTATAAACAATTAATTAACTTACTTACAAATGTTG-ATATATATATTTG
1 TTAAATCAAATTTTTATTATAAACAATTAATTAACTTACTTAAAAATATTGAATATATATATTTG
* * *
8075158 TTAGTAGATAATAGATTCTA
66 TCAATAGATAATAAATTCTA
8075178 T
1 T
8075179 ATTCAATCGA
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
84 31 0.40
86 47 0.60
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.44
Consensus pattern (85 bp):
TTAAATCAAATTTTTATTATAAACAATTAATTAACTTACTTAAAAATATTGAATATATATATTTG
TCAATAGATAATAAATTCTA
Found at i:8078530 original size:48 final size:48
Alignment explanation
Indices: 8078474--8078571 Score: 133
Period size: 48 Copynumber: 2.0 Consensus size: 48
8078464 CATGTGCACC
*
8078474 CATGTACCATACCTATATAAACTCTCTCAATCTCTTCTAGTCCACTCA
1 CATGTACCATACCTATATAAACCCTCTCAATCTCTTCTAGTCCACTCA
* ** * * *
8078522 CATGTACCATACCTATGTGGACCCTTTCAGTCTTTTCTAGTCCACTCA
1 CATGTACCATACCTATATAAACCCTCTCAATCTCTTCTAGTCCACTCA
8078570 CA
1 CA
8078572 AACATACAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.26, C:0.33, G:0.08, T:0.34
Consensus pattern (48 bp):
CATGTACCATACCTATATAAACCCTCTCAATCTCTTCTAGTCCACTCA
Found at i:8079129 original size:31 final size:31
Alignment explanation
Indices: 8079092--8079174 Score: 105
Period size: 31 Copynumber: 2.7 Consensus size: 31
8079082 CTCGAACTAT
* *
8079092 GCTCTGATATCACTTGTTGGGGATTA-TGACA
1 GCTCTGATATCACTTGTTAGGGATCACT-ACA
* *
8079123 GTTCTGATATCAGTTGTTAGGGATCACTACA
1 GCTCTGATATCACTTGTTAGGGATCACTACA
*
8079154 GCTCTGAAATCACTTGTTAGG
1 GCTCTGATATCACTTGTTAGG
8079175 CAAAAAGCCT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 43 0.98
32 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (31 bp):
GCTCTGATATCACTTGTTAGGGATCACTACA
Found at i:8079509 original size:48 final size:48
Alignment explanation
Indices: 8079429--8079522 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
8079419 TGTGCACCCA
* *
8079429 TGCACTATACCTATGTAGATCCTTTCAATCTCTTCTAGTCCACTCATG
1 TGCACCATACCTATGTAGACCCTTTCAATCTCTTCTAGTCCACTCATG
* * *
8079477 TGCACCATACCTATGTGGACCCTCTT-AGTCTCTTCTAGTCCTCTCA
1 TGCACCATACCTATGTAGACCCT-TTCAATCTCTTCTAGTCCACTCA
8079523 CAAACATACA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 38 0.95
49 2 0.05
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (48 bp):
TGCACCATACCTATGTAGACCCTTTCAATCTCTTCTAGTCCACTCATG
Found at i:8080129 original size:2 final size:2
Alignment explanation
Indices: 8080122--8080147 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8080112 TACCTTAGGC
8080122 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8080148 CAGTTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8083137 original size:36 final size:36
Alignment explanation
Indices: 8083097--8083166 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
8083087 GAGTTTGAAA
* * *
8083097 TAGGTATATGGTTTTGGGGAAATTTAGGGTTTTAGG
1 TAGGTATAGGGTTTTGAGGAAATTTAAGGTTTTAGG
* * *
8083133 TAGGTTTGGGGTTTTGAGTAAATTTAAGGTTTTA
1 TAGGTATAGGGTTTTGAGGAAATTTAAGGTTTTA
8083167 AGAGAATTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (36 bp):
TAGGTATAGGGTTTTGAGGAAATTTAAGGTTTTAGG
Found at i:8083314 original size:19 final size:19
Alignment explanation
Indices: 8083272--8083368 Score: 92
Period size: 19 Copynumber: 5.2 Consensus size: 19
8083262 GGTTTTAGGA
*
8083272 TTTGA-CTAAGGTTTAAGG
1 TTTGACCTAAGGTTTAAAG
* *
8083290 TATGACCTAGGGTTTAAAG
1 TTTGACCTAAGGTTTAAAG
*
8083309 TTTGACC-AAAGTTTAGAA-
1 TTTGACCTAAGGTTTA-AAG
* *
8083327 TTTGACTTTAGGTTTAAAG
1 TTTGACCTAAGGTTTAAAG
* *
8083346 TTTGACCTAGGGTTTAAGG
1 TTTGACCTAAGGTTTAAAG
8083365 TTTG
1 TTTG
8083369 GGGTTTAACC
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
18 18 0.29
19 44 0.71
ACGTcount: A:0.28, C:0.08, G:0.25, T:0.39
Consensus pattern (19 bp):
TTTGACCTAAGGTTTAAAG
Found at i:8085449 original size:17 final size:17
Alignment explanation
Indices: 8085429--8085461 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8085419 TACTAATGTA
8085429 AATAGATCCCTCATATT
1 AATAGATCCCTCATATT
*
8085446 AATAGATCCCTTATAT
1 AATAGATCCCTCATAT
8085462 ATATATGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.36
Consensus pattern (17 bp):
AATAGATCCCTCATATT
Found at i:8088246 original size:15 final size:16
Alignment explanation
Indices: 8088220--8088261 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8088210 ACTCAACTTC
*
8088220 TTTTTTCACTTTTCA-T
1 TTTTTTC-CTTTTCAGG
*
8088236 TTTTTTCCTTTTTAGG
1 TTTTTTCCTTTTCAGG
8088252 TTTTTTCCTT
1 TTTTTTCCTT
8088262 CCTTTCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.07, C:0.17, G:0.05, T:0.71
Consensus pattern (16 bp):
TTTTTTCCTTTTCAGG
Found at i:8089084 original size:31 final size:32
Alignment explanation
Indices: 8089014--8089085 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
8089004 TTTATTTTAT
* *
8089014 TTTATATTT-ATATATTATTATACTAATAAAG
1 TTTATATTTAATATATTATTATAATAATAAAA
*
8089045 TTTTTATTTAATATATTATT-TAATAA-AAAA
1 TTTATATTTAATATATTATTATAATAATAAAA
8089075 TTCTATATTTA
1 TT-TATATTTA
8089086 TACCTAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
30 5 0.14
31 20 0.57
32 10 0.29
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (32 bp):
TTTATATTTAATATATTATTATAATAATAAAA
Found at i:8089898 original size:157 final size:155
Alignment explanation
Indices: 8089448--8090078 Score: 621
Period size: 159 Copynumber: 4.0 Consensus size: 155
8089438 CTACAAACAC
* * * * * * ** * *
8089448 ATAAACCATAATATTTTAACACATATAAAGTATGGCAACCAAGTTCAAATATTTTGACAAA-TTT
1 ATAAACCGTAACATTTTCACACATATCAAGCATGGCAGCCAAGTTCAACCA--TTCAAAAAGTTT
** * *
8089512 AATATCATGTATTTTAGTTATCTAAGCTTTTAAAATAGAAATATAACAACAAATTTACA-TTTTG
64 AATATCATGTATTCAAGTTATCTAAGCTTTTAAAATAGAAATATAGCAATAAATTTACATTTTTG
* * ** *
8089576 CCCTCT-AAGGGCATAAAAGTGCCAAAAACA
129 CCCTTTGACGTACA-AAAAGTG-C-TAAA-A
* * * * *
8089606 CATAAACCATAACATTTCCACACATATCAA-CTATGGCAACCTAGTTCAACCATTTGAACAAA-T
1 -ATAAACCGTAACATTTTCACACATATCAAGC-ATGGCAGCCAAGTTCAACCA-TTCAA-AAAGT
* * *
8089669 TTAATATCATGTACTCAA-TCTATCTAAGCTTTTAAAATAGAAATATAGTAGTAAATTTACATTT
62 TTAATATCATGTATTCAAGT-TATCTAAGCTTTTAAAATAGAAATATAGCAATAAATTTACATTT
*
8089733 TTGTCCTTTGACGTTACAAAAAAGTGCTAAAA
126 TTGCCCTTTGACG-TAC-AAAAAGTGCTAAAA
*
8089765 ATAAACCGTAACATTTTCACACATATCAAGCATGGCAGCCAAGTACAACCATTCAAAAAGTTTAA
1 ATAAACCGTAACATTTTCACACATATCAAGCATGGCAGCCAAGTTCAACCATTCAAAAAGTTTAA
*
8089830 TATCATATATTCAAGTTATCTAAGCTTTTAAAATAGAAATATAGCAATAAATTTACATTTTTGCC
66 TATCATGTATTCAAGTTATCTAAGCTTTTAAAATAGAAATATAGCAATAAATTTACATTTTTGCC
* *
8089895 CTTTGACATTACAAAAAGTGCT-AAT
131 CTTTGAC-GTACAAAAAGTGCTAAAA
* * * * * * * * *
8089920 ATTAGCTGTAATATTTTCATACATATCAAGTATGACAGTCAAGTTCAACCATTCGAATAAGTTTA
1 ATAAACCGTAACATTTTCACACATATCAAGCATGGCAGCCAAGTTCAACCATTC-AAAAAGTTTA
* * * * ** *
8089985 ATATCATGTATTTAAGCTATCTAAG-TTGTTAAAACATAAATATAGCCGTAAATTTATATTTTTG
65 ATATCATGTATTCAAGTTATCTAAGCTT-TTAAAATAGAAATATAGCAATAAATTTACATTTTTG
*
8090049 CCCTTTGACGCACAAAAAGTGCTAAAA
129 CCCTTTGACGTACAAAAAGTGCTAAAA
8090076 ATA
1 ATA
8090079 CATAAAGTCT
Statistics
Matches: 401, Mismatches: 57, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
155 61 0.15
156 88 0.22
157 77 0.19
158 51 0.13
159 100 0.25
160 12 0.03
161 3 0.01
162 8 0.02
163 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (155 bp):
ATAAACCGTAACATTTTCACACATATCAAGCATGGCAGCCAAGTTCAACCATTCAAAAAGTTTAA
TATCATGTATTCAAGTTATCTAAGCTTTTAAAATAGAAATATAGCAATAAATTTACATTTTTGCC
CTTTGACGTACAAAAAGTGCTAAAA
Found at i:8090179 original size:14 final size:14
Alignment explanation
Indices: 8090160--8090186 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8090150 TTTTAAAATA
8090160 AAAATTTATATTAG
1 AAAATTTATATTAG
8090174 AAAATTTATATTA
1 AAAATTTATATTA
8090187 TGTATTCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
AAAATTTATATTAG
Found at i:8098867 original size:20 final size:20
Alignment explanation
Indices: 8098827--8098869 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8098817 TATAAAAATT
*
8098827 AAAATTCAAAAAAATTTTGA
1 AAAATTCAAAAAAATTATGA
8098847 AAAATTC-AAAAAATATATGA
1 AAAATTCAAAAAAAT-TATGA
8098867 AAA
1 AAA
8098870 TAAAATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
AAAATTCAAAAAAATTATGA
Found at i:8099283 original size:16 final size:17
Alignment explanation
Indices: 8099247--8099286 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
8099237 AAATTTTAAG
*
8099247 AAAATTTAATTTTTATT
1 AAAATTTAATATTTATT
8099264 AAAATTTAATATTT-TT
1 AAAATTTAATATTTATT
8099280 AAAATTT
1 AAAATTT
8099287 TTGGATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
AAAATTTAATATTTATT
Found at i:8100149 original size:20 final size:21
Alignment explanation
Indices: 8100126--8100167 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
8100116 CAATTTATTG
*
8100126 TTTTTATT-TATTA-TTTTAA
1 TTTTTATTAAATTATTTTTAA
8100145 TTTTTATTAAATTATTTTTAA
1 TTTTTATTAAATTATTTTTAA
8100166 TT
1 TT
8100168 AAACATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 4 0.20
21 8 0.40
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTATTAAATTATTTTTAA
Found at i:8101617 original size:100 final size:101
Alignment explanation
Indices: 8101443--8101627 Score: 354
Period size: 100 Copynumber: 1.8 Consensus size: 101
8101433 GCAATCCTTT
*
8101443 TATACAACAAACAATGCAAAGATTTAATAGCTGGACCGGATGTTGAATGTTCAGCTCTCAATTAA
1 TATACAACAAACAATGCAAAGATTTAACAGCTGGACCGGATGTTGAATGTTCAGCTCTCAATTAA
8101508 AACAATAAATTATATAATTGTGTAATCTAATTCTTC
66 AACAATAAATTATATAATTGTGTAATCTAATTCTTC
8101544 TATACAACAAACAATGCAAAGATTTAACAGCTGGACC-GATGTTGAATGTTCAGCTCTCAATTAA
1 TATACAACAAACAATGCAAAGATTTAACAGCTGGACCGGATGTTGAATGTTCAGCTCTCAATTAA
8101608 AACAATAAATTATATAATTG
66 AACAATAAATTATATAATTG
8101628 GAAAAGCATT
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
100 47 0.57
101 36 0.43
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (101 bp):
TATACAACAAACAATGCAAAGATTTAACAGCTGGACCGGATGTTGAATGTTCAGCTCTCAATTAA
AACAATAAATTATATAATTGTGTAATCTAATTCTTC
Found at i:8102772 original size:137 final size:140
Alignment explanation
Indices: 8102562--8102816 Score: 324
Period size: 137 Copynumber: 1.8 Consensus size: 140
8102552 AATCGACTTC
* * * *
8102562 AATAATCCCTTTAGAAAAAATTGAATGAGGTTAGTAAAAGCATTTCTGGATAAAAATAGTCTTTA
1 AATAATCCCGTTACAAAAAATTGAATGAGGTTAGTAAAAGCATTTCTGGATAAAAATAGTATTGA
*
8102627 ATAATCCCCTTCAATTTTTATG-GCAGGATTATTCAAAGCGTTTTGG-CAAAAACGGATTATGCC
66 ATAATCCCCTACAATTTTTATGAGCA-GATTATTCAAAGCGTTTTGGCCAAAAACGGATTATGCC
8102690 AAAACGCCTTG
130 AAAACGCCTTG
* * * *
8102701 AATAAT-CCGTTACAAAAAATTGAATG-GGATTATTAAAGGCGTTT-TTGACTAAAAAT-GTATT
1 AATAATCCCGTTACAAAAAATTGAATGAGG-TTAGTAAAAGCATTTCTGGA-TAAAAATAGTATT
* * * *
8102762 GAATAATCCCCTACAATTTTTATGAGTAGATTATTCTAGGTGTTTTGGCCAAAAA
64 GAATAATCCCCTACAATTTTTATGAGCAGATTATTCAAAGCGTTTTGGCCAAAAA
8102817 ATGCCTTGAA
Statistics
Matches: 99, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
137 48 0.48
138 45 0.45
139 6 0.06
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33
Consensus pattern (140 bp):
AATAATCCCGTTACAAAAAATTGAATGAGGTTAGTAAAAGCATTTCTGGATAAAAATAGTATTGA
ATAATCCCCTACAATTTTTATGAGCAGATTATTCAAAGCGTTTTGGCCAAAAACGGATTATGCCA
AAACGCCTTG
Found at i:8102856 original size:62 final size:62
Alignment explanation
Indices: 8102690--8102862 Score: 168
Period size: 62 Copynumber: 2.8 Consensus size: 62
8102680 GGATTATGCC
* * * * * *
8102690 AAAACGCCTTGAATAATCCGTTACAAAAAATTGAATGGGATTATTAAAGGCGTTTTTGACTA
1 AAAATGCCTTGAATAATCCCTTACAAAAAATTGAATAGGATTATTCAAGGCGTTTTGGACAA
** * **** * * * *
8102752 AAAATGTATTGAATAATCCCCTACAATTTTTATGAGTA-GATTATTCTAGGTGTTTTGGCCAA
1 AAAATGCCTTGAATAATCCCTTACAAAAAAT-TGAATAGGATTATTCAAGGCGTTTTGGACAA
*
8102814 AAAATGCCTTGAATATTCCCTTACAAAAAATTGAATAGGATTATTCAAG
1 AAAATGCCTTGAATAATCCCTTACAAAAAATTGAATAGGATTATTCAAG
8102863 ATATTTTTGG
Statistics
Matches: 82, Mismatches: 27, Indels: 4
0.73 0.24 0.04
Matches are distributed among these distances:
61 5 0.06
62 73 0.89
63 4 0.05
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.34
Consensus pattern (62 bp):
AAAATGCCTTGAATAATCCCTTACAAAAAATTGAATAGGATTATTCAAGGCGTTTTGGACAA
Found at i:8110325 original size:61 final size:60
Alignment explanation
Indices: 8110260--8110407 Score: 147
Period size: 61 Copynumber: 2.4 Consensus size: 60
8110250 GGCTAGGATC
*
8110260 ACCTTAAATAACTTTCATTCAATTTTTC-AGGGGATTATTGAAGGCGTTTTTAGCTAAAAAT
1 ACCTTAAATAAC-TTCATTCAATTTTTCAAGGGGATTATTGAA-GCATTTTTAGCTAAAAAT
* * * *** *
8110321 ACCTTGAATAA-TCCACTCATAAAAATTCAAGGGGATTATTGAAGCATTTTTAGCTAGAAAT
1 ACCTTAAATAACTTCATTC--AATTTTTCAAGGGGATTATTGAAGCATTTTTAGCTAAAAAT
* * *
8110382 GCTTTAAATAACCTCATTCAATTTTT
1 ACCTTAAATAACTTCATTCAATTTTT
8110408 TGTAAATGAT
Statistics
Matches: 66, Mismatches: 17, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
59 5 0.08
60 4 0.06
61 39 0.59
62 18 0.27
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (60 bp):
ACCTTAAATAACTTCATTCAATTTTTCAAGGGGATTATTGAAGCATTTTTAGCTAAAAAT
Found at i:8110957 original size:352 final size:351
Alignment explanation
Indices: 8110324--8110966 Score: 748
Period size: 352 Copynumber: 1.8 Consensus size: 351
8110314 TAAAAATACC
* * * *
8110324 TTGAATAATCCACTCATAAAAATTCAAGGGGATTATTGAAGCATTTTTAGCTAGAAATGCTTTAA
1 TTGAATAATCCACTCATAAAAATTAAAGAGGATTATTGAAGCATTTTTAGCCAGAAACGCTTTAA
* * * * *
8110389 ATAACCTCATTCAATTTTTTGTAAATGATTATTCAAGGTATTTTTTGGATAAAAATGCCTTGAAT
66 ATAACCTCATTCAATTTTTTGTAAATGATTATTCAAGGTATTTTTTGCAAAAAAACGCATGGAAT
* * * * *
8110454 AATCTCATCATAAAAATTGAAAGAAATTATTGAAGGTGTTTTTTACCATAAACGCCTTGAATAAT
131 AATCTCATCATAAAAATTGAAAGAAATTATTCAAGGTATTTCTGACCATAAACGCCTTCAATAAT
* * * * * * *
8110519 CCCCTCATAAAAGTTTTTGAGGATTGTTCAAGGCGTTTTTGGCCAGAAACACCTTGATTAACTCC
196 CACCTCATAAAAATTTTTGAGGATTATTCAAGACATTTTTGGCCAAAAACACCTTGAATAACTCC
*
8110584 ATTCAATTTTTTCTAAAGAGATTATTCAAGGCATTCTTGTCCAATAAAAAATTGGAAGGGATTAT
261 ATTCAATTTTTTCTAAAGAGATTATTAAAGGCATTCTTGTCCAATAAAAAATTGGAAGGGATTAT
8110649 TAAATGCATTTTTGGCCAATAACACA
326 TAAATGCATTTTTGGCCAATAACACA
* ** *
8110675 TTGAATAAT-CACCTTATAAAAATTAAAGAGGATTATTGAAGGTGTTTTTGGCCAGAAACG-TCT
1 TTGAATAATCCA-CTCATAAAAATTAAAGAGGATTATTGAA-GCATTTTTAGCCAGAAACGCT-T
* *
8110738 TGAATAACCTCATTCAATTTTTTGTAAA-GAATTATTTAAGGTA-TTTTTGACAAAAAAACGCAT
63 TAAATAACCTCATTCAATTTTTTGTAAATG-ATTATTCAAGGTATTTTTTG-CAAAAAAACGCAT
* * * *
8110801 GGAATAATC-CCTTATAAACAATT-AAATAAAGCTTATTCAAGGTATTTCTGA-CTTAAAACGCC
126 GGAATAATCTCATCATAAA-AATTGAAAGAAA--TTATTCAAGGTATTTCTGACCAT-AAACGCC
* * * * ** *
8110863 TTCAATAATCACTTCATAAAAAATTTTT-TGGATTATTCAAGACATTTTTTGTCAAAAATGCTTT
187 TTCAATAATCACCTCAT-AAAAATTTTTGAGGATTATTCAAGACATTTTTGGCCAAAAACACCTT
* *
8110927 GAATAA-TCCTATTCATTTTTTTGT-AAGAGATTATTAAAGG
251 GAATAACTCC-ATTCAATTTTTTCTAAAGAGATTATTAAAGG
8110967 TATTTTTCAT
Statistics
Matches: 240, Mismatches: 41, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
350 2 0.01
351 55 0.23
352 95 0.40
353 79 0.33
354 9 0.04
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (351 bp):
TTGAATAATCCACTCATAAAAATTAAAGAGGATTATTGAAGCATTTTTAGCCAGAAACGCTTTAA
ATAACCTCATTCAATTTTTTGTAAATGATTATTCAAGGTATTTTTTGCAAAAAAACGCATGGAAT
AATCTCATCATAAAAATTGAAAGAAATTATTCAAGGTATTTCTGACCATAAACGCCTTCAATAAT
CACCTCATAAAAATTTTTGAGGATTATTCAAGACATTTTTGGCCAAAAACACCTTGAATAACTCC
ATTCAATTTTTTCTAAAGAGATTATTAAAGGCATTCTTGTCCAATAAAAAATTGGAAGGGATTAT
TAAATGCATTTTTGGCCAATAACACA
Found at i:8117048 original size:25 final size:25
Alignment explanation
Indices: 8116958--8117057 Score: 92
Period size: 25 Copynumber: 3.8 Consensus size: 25
8116948 GGGAGTGTAG
* *
8116958 AAATCTGATTCTCTTACATTAGTGG
1 AAATCTGATTCTCCTACATTAGTGC
* ** *
8116983 AGATCCAATTCTCCTACATTAATGC
1 AAATCTGATTCTCCTACATTAGTGC
*
8117008 AGCTTGATCTGATTCTCCTACATTAGTGC
1 A----AATCTGATTCTCCTACATTAGTGC
*
8117037 AAATCTGATTCTCCTATATTA
1 AAATCTGATTCTCCTACATTA
8117058 CTACAACTTG
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
25 38 0.63
29 22 0.37
ACGTcount: A:0.28, C:0.22, G:0.12, T:0.38
Consensus pattern (25 bp):
AAATCTGATTCTCCTACATTAGTGC
Found at i:8117068 original size:54 final size:54
Alignment explanation
Indices: 8116960--8117069 Score: 139
Period size: 54 Copynumber: 2.0 Consensus size: 54
8116950 GAGTGTAGAA
* * * * *
8116960 ATCTGATTCTCTTACATTAGTGGAGATCCAATTCTCCTACATTAATGCAGCTTG
1 ATCTGATTCTCCTACATTAGTGCAAATCCAATTCTCCTACATTAATACAACTTG
** * *
8117014 ATCTGATTCTCCTACATTAGTGCAAATCTGATTCTCCTATATTACTACAACTTG
1 ATCTGATTCTCCTACATTAGTGCAAATCCAATTCTCCTACATTAATACAACTTG
8117068 AT
1 AT
8117070 TTCCTAATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (54 bp):
ATCTGATTCTCCTACATTAGTGCAAATCCAATTCTCCTACATTAATACAACTTG
Found at i:8123557 original size:20 final size:23
Alignment explanation
Indices: 8123516--8123557 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 23
8123506 GATTTAGTAT
8123516 ATTTAATATATAATTGAAAATTG
1 ATTTAATATATAATTGAAAATTG
8123539 ATTTAA-AT-TAATT-AAAATT
1 ATTTAATATATAATTGAAAATT
8123558 TAATTTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 5 0.26
22 2 0.11
23 6 0.32
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (23 bp):
ATTTAATATATAATTGAAAATTG
Found at i:8123563 original size:21 final size:23
Alignment explanation
Indices: 8123516--8123563 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
8123506 GATTTAGTAT
*
8123516 ATTTAATATATAATTGAAAATTG
1 ATTTAATATATAATTGAAAATTA
8123539 ATTTAA-AT-TAATT-AAAATTTA
1 ATTTAATATATAATTGAAAA-TTA
8123560 ATTT
1 ATTT
8123564 GTAATAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 4 0.17
21 11 0.48
22 2 0.09
23 6 0.26
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
ATTTAATATATAATTGAAAATTA
Found at i:8125431 original size:16 final size:16
Alignment explanation
Indices: 8125412--8125443 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8125402 CTTGAGATGT
8125412 TATTTTACTTTAAAAA
1 TATTTTACTTTAAAAA
*
8125428 TATTTTTCTTTAAAAA
1 TATTTTACTTTAAAAA
8125444 CTCATTTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTTTACTTTAAAAA
Found at i:8125637 original size:19 final size:19
Alignment explanation
Indices: 8125596--8125643 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
8125586 ATAGGATCAA
*
8125596 GTTAGTTTTAGGGTTTATGG
1 GTTAG-TTTAGGGTTTAGGG
8125616 GTTAGTTTAGGGTTT-GGAG
1 GTTAGTTTAGGGTTTAGG-G
*
8125635 GTTGGTTTA
1 GTTAGTTTA
8125644 AGGTCTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 1 0.04
19 19 0.76
20 5 0.20
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.48
Consensus pattern (19 bp):
GTTAGTTTAGGGTTTAGGG
Found at i:8125725 original size:6 final size:6
Alignment explanation
Indices: 8125676--8125802 Score: 76
Period size: 7 Copynumber: 19.3 Consensus size: 6
8125666 GTTTGGGTGG
* * * *
8125676 TTAGAGT TTAGGT TTGAGGT TTAAGGA CTAGG- TTACGAT TTAGGT TTAGGGC
1 TTAG-GT TTAGGT TT-AGGT TT-AGGT TTAGGT TTA-GGT TTAGGT TTA-GGT
* *
8125728 TTAGGGTT TTATGT TTAGGAT TTAGAGT TTAGGT TTAGGT TTAAGT TTAGGT
1 TTA-GG-T TTAGGT TTAGG-T TTAG-GT TTAGGT TTAGGT TTAGGT TTAGGT
*
8125780 TTAAGGTT TTAGAGT TAAGGT TT
1 TT-AGG-T TTAG-GT TTAGGT TT
8125803 GGTGTAAAGT
Statistics
Matches: 96, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
5 2 0.02
6 41 0.43
7 45 0.47
8 8 0.08
ACGTcount: A:0.23, C:0.02, G:0.30, T:0.45
Consensus pattern (6 bp):
TTAGGT
Found at i:8125775 original size:12 final size:12
Alignment explanation
Indices: 8125748--8125784 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
8125738 ATGTTTAGGA
*
8125748 TTTAGAGTTTAGG
1 TTTAG-GTTTAAG
8125761 TTTAGGTTTAAG
1 TTTAGGTTTAAG
8125773 TTTAGGTTTAAG
1 TTTAGGTTTAAG
8125785 GTTTTAGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 18 0.78
13 5 0.22
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (12 bp):
TTTAGGTTTAAG
Found at i:8125801 original size:39 final size:38
Alignment explanation
Indices: 8125735--8125818 Score: 107
Period size: 39 Copynumber: 2.2 Consensus size: 38
8125725 GGCTTAGGGT
* * *
8125735 TTTATGTTTAGGATTTAGAGTTTAGGTTTAGGT-TTAAG
1 TTTAGGTTTAGGATTTAGAGTTAAGGTTT-GGTGTAAAG
*
8125773 TTTAGGTTTAAGGTTTTAGAGTTAAGGTTTGGTGTAAAG
1 TTTAGGTTT-AGGATTTAGAGTTAAGGTTTGGTGTAAAG
8125812 TTTAGGT
1 TTTAGGT
8125819 GGATCTGACA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 11 0.28
39 29 0.73
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.48
Consensus pattern (38 bp):
TTTAGGTTTAGGATTTAGAGTTAAGGTTTGGTGTAAAG
Found at i:8126100 original size:29 final size:28
Alignment explanation
Indices: 8126018--8126101 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 28
8126008 AGCATGACAC
* *
8126018 GAATAAACACAAATAATACGGATATACAA
1 GAATAGACACAACTAATAC-GATATACAA
*
8126047 GAATAGACACAACTAACATA-GATATACAC
1 GAATAGACACAACT-A-ATACGATATACAA
* *
8126076 GAATAGATACGACTAATACGAATATA
1 GAATAGACACAACTAATACG-ATATA
8126102 TACATAAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
27 3 0.07
28 2 0.04
29 37 0.80
30 1 0.02
31 3 0.07
ACGTcount: A:0.54, C:0.15, G:0.12, T:0.19
Consensus pattern (28 bp):
GAATAGACACAACTAATACGATATACAA
Found at i:8126925 original size:50 final size:50
Alignment explanation
Indices: 8126820--8126987 Score: 156
Period size: 50 Copynumber: 3.2 Consensus size: 50
8126810 ATGGTTTTGC
* * *
8126820 AATGCATGTAACAAAATTACTTAAATGCCATAAATAAAAATGCCAACTTT
1 AATGCATGTAACAAAATTACTAAAATGCCATAAATAAAAATACAAACTTT
* * * *
8126870 GATGCATGTAACAAAATTACTAAAATGCTATTAATAAAAATACAAATTTT
1 AATGCATGTAACAAAATTACTAAAATGCCATAAATAAAAATACAAACTTT
* *
8126920 AATGCATGGGAGTAATGTGACAAAAATTACTAAAATGCCATTAATGAAAATACAAACTTT
1 AATGCAT----GT-A----AC-AAAATTACTAAAATGCCATAAATAAAAATACAAACTTT
*
8126980 AATACATG
1 AATGCATG
8126988 GACTATGTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
50 49 0.51
54 2 0.02
55 1 0.01
56 1 0.01
59 2 0.02
60 41 0.43
ACGTcount: A:0.48, C:0.12, G:0.11, T:0.29
Consensus pattern (50 bp):
AATGCATGTAACAAAATTACTAAAATGCCATAAATAAAAATACAAACTTT
Found at i:8126943 original size:59 final size:60
Alignment explanation
Indices: 8126875--8126988 Score: 176
Period size: 60 Copynumber: 1.9 Consensus size: 60
8126865 ACTTTGATGC
* * *
8126875 ATGTAAC-AAAATTACTAAAATGCTATTAATAAAAATACAAATTTTAATGCATGGGAGTA
1 ATGTAACAAAAATTACTAAAATGCCATTAATAAAAATACAAACTTTAATACATGGGAGTA
* *
8126934 ATGTGACAAAAATTACTAAAATGCCATTAATGAAAATACAAACTTTAATACATGG
1 ATGTAACAAAAATTACTAAAATGCCATTAATAAAAATACAAACTTTAATACATGG
8126989 ACTATGTATG
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 6 0.12
60 43 0.88
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (60 bp):
ATGTAACAAAAATTACTAAAATGCCATTAATAAAAATACAAACTTTAATACATGGGAGTA
Found at i:8128569 original size:143 final size:143
Alignment explanation
Indices: 8128270--8128571 Score: 338
Period size: 143 Copynumber: 2.1 Consensus size: 143
8128260 TTTTGATATG
* * * *
8128270 AAAAAGGTCAAATTACAAAATTACCCTTTTAGGGTATTTTAGTAATTTCATGCCTTTCGAGGTGT
1 AAAAAGGTCAAATTACAAAATTACCCTCTAAGGGTATTTTAGTAATTTCATACCTTTCGAGGTGC
* * * * * **
8128335 GATCAAGGTTTTTAATTCTCAAAAATCATGAAATAATATAAAACCATGATCTAGAATGTTTCGTA
66 AATCAAGGTTTTTAATGCACAAAAATCATGAAATAATATAAAACCATAATATAGAATGTTTCACA
*
8128400 AAAAATTGACCTA
131 AAAAATGGACCTA
** * * **
8128413 AAAAAAATTAAATTACGAAAA-TA-CCTCTAAGGGTATTTTAGTAATTTTATATTTTTCGAGGTG
1 AAAAAGGTCAAATTAC-AAAATTACCCTCTAAGGGTATTTTAGTAATTTCATACCTTTCGAGGTG
* * **
8128476 CAATCAAGGTTTTTCATGCACAAAAAATCATGAAATAATATAAAACTATAATATAGTGTGTTTCA
65 CAATCAAGGTTTTTAATGCAC-AAAAATCATGAAATAATATAAAACCATAATATAGAATGTTTCA
* *
8128541 CAAGAAATGGACCTT
129 CAAAAAATGGACCTA
**
8128556 GGAAAGGTCAAATTAC
1 AAAAAGGTCAAATTAC
8128572 TAGTAATTTT
Statistics
Matches: 128, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
142 50 0.39
143 74 0.58
144 4 0.03
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (143 bp):
AAAAAGGTCAAATTACAAAATTACCCTCTAAGGGTATTTTAGTAATTTCATACCTTTCGAGGTGC
AATCAAGGTTTTTAATGCACAAAAATCATGAAATAATATAAAACCATAATATAGAATGTTTCACA
AAAAATGGACCTA
Found at i:8129222 original size:22 final size:23
Alignment explanation
Indices: 8129171--8129224 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
8129161 TTTAAGCATT
*
8129171 TTCTTTCTTTTTTTCTCTATCAAA
1 TTCTTT-TTTCTTTCTCTATCAAA
*
8129195 AT-TTTTTTCTTTCTCTATC-AA
1 TTCTTTTTTCTTTCTCTATCAAA
8129216 TTCTTTTTT
1 TTCTTTTTT
8129225 GCCTTAATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.12
22 19 0.73
23 3 0.12
24 1 0.04
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.67
Consensus pattern (23 bp):
TTCTTTTTTCTTTCTCTATCAAA
Found at i:8130091 original size:24 final size:23
Alignment explanation
Indices: 8130051--8130101 Score: 84
Period size: 24 Copynumber: 2.2 Consensus size: 23
8130041 TAGTCCTTCC
8130051 TTTTCTTTCTTTCTTTCTCTTTT
1 TTTTCTTTCTTTCTTTCTCTTTT
*
8130074 TTTTCTTTTTTTTCTTTCTCTTTT
1 TTTTC-TTTCTTTCTTTCTCTTTT
8130098 TTTT
1 TTTT
8130102 TTACGGGAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTCTTTCTTTCTTTCTCTTTT
Done.