Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 44 of 105
Found at i:8310796 original size:26 final size:27
Alignment explanation
Indices: 8310765--8310818 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
8310755 CTTTATACTG
*
8310765 TGTGTTCATTTATCATATATAT-TATA
1 TGTGTTCATTTATAATATATATATATA
8310791 TGTGTTCATTTATAATATATATATATA
1 TGTGTTCATTTATAATATATATATATA
8310818 T
1 T
8310819 ATATATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.33, C:0.06, G:0.07, T:0.54
Consensus pattern (27 bp):
TGTGTTCATTTATAATATATATATATA
Found at i:8319519 original size:2 final size:2
Alignment explanation
Indices: 8319512--8319544 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
8319502 GATATTCTCA
*
8319512 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8319545 AGCCCTCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8322811 original size:26 final size:26
Alignment explanation
Indices: 8322782--8322839 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
8322772 CCCAATTAGA
* *
8322782 CCCATTGA-TGTTTGGGCTTGAGTAAG
1 CCCATTGACT-TTTGGGCCTAAGTAAG
*
8322808 CCCATTGACTTTTGGGCCTAAGTAGG
1 CCCATTGACTTTTGGGCCTAAGTAAG
8322834 CCCATT
1 CCCATT
8322840 TGTGTCTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (26 bp):
CCCATTGACTTTTGGGCCTAAGTAAG
Found at i:8323971 original size:20 final size:20
Alignment explanation
Indices: 8323946--8323984 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8323936 TATATTCTTT
8323946 AAAAAAAATCTTTTCAAATG
1 AAAAAAAATCTTTTCAAATG
*
8323966 AAAAAATATCTTTTCAAAT
1 AAAAAAAATCTTTTCAAAT
8323985 AAAGTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.03, T:0.33
Consensus pattern (20 bp):
AAAAAAAATCTTTTCAAATG
Found at i:8335432 original size:119 final size:120
Alignment explanation
Indices: 8335216--8335775 Score: 515
Period size: 120 Copynumber: 4.7 Consensus size: 120
8335206 CATTTTCCAC
* * * * *
8335216 TCACTTGATCTTGGCTCAGTCTAGATCATTTATTATGA-TCGTGGTTTCATCCCGGTCATTTATT
1 TCACTTGATCTTGACTCAGTCCAGATCATTTCTTATGATTCGTGATTTCATCCCAGTCATTTATT
* * * * * * * * *
8335280 TTTTACCTCAACT-TAGTCTTGGTCGCTTCATTTTTGACTCGTGATTTCACCCCGA
66 TTTGACCTCGACTCGA-TCTTAGTCACTTTATTTTTGACTTGTGGTTTCTCCCCGA
* * * * * *
8335335 TCACTTGATCTTGACTCTGTCCAAATTATTTTTTATGATTCGTGATTTCGTCTCAGTCATTTATT
1 TCACTTGATCTTGACTCAGTCCAGATCATTTCTTATGATTCGTGATTTCATCCCAGTCATTTATT
* ***
8335400 TTTAACCTCGACTCGATCTT-GTCACTTTATTTTTGACTTGTGGTTT-TGTTTCGA
66 TTTGACCTCGACTCGATCTTAGTCACTTTATTTTTGACTTGTGGTTTCT-CCCCGA
* * * * *
8335454 ACACTTGATCTTGGCTCAGTCCAGATCATTTCTTATGATTTGTGATTTCATCCCGGTTATTTATT
1 TCACTTGATCTTGACTCAGTCCAGATCATTTCTTATGATTCGTGATTTCATCCCAGTCATTTATT
* * * * * *
8335519 TTCGACCTCAACTCGATCTTAGTCACTTTATTTTTGACTTGTAGTTTTGTTCCAG-
66 TTTGACCTCGACTCGATCTTAGTCACTTTATTTTTGACTTGT-GGTTTCTCCCCGA
* * * ** * * ***
8335574 TCACCTGATATTGACTTAGTTTAGATAATTTCTTATGATTCG-CAGTTTCAT-TTTGTTCATTTA
1 TCACTTGATCTTGACTCAGTCCAGATCATTTCTTATGATTCGTGA-TTTCATCCCAG-TCATTTA
* *
8335637 TTTTCGACCTCGACTCGATCTTAGTCACTTTATTTTTGACTTATGGTTTCTCCCCGA
64 TTTTTGACCTCGACTCGATCTTAGTCACTTTATTTTTGACTTGTGGTTTCTCCCCGA
* * * * * * * *
8335694 TCACCTGATCTT-AGTTCAATCCAAATCGTTTCTTATGATTTGTGGTTTTATCCCAGTCATTTAT
1 TCACTTGATCTTGA-CTCAGTCCAGATCATTTCTTATGATTCGTGATTTCATCCCAGTCATTTAT
8335758 TTTTGACCTCGACTCGAT
65 TTTTGACCTCGACTCGAT
8335776 TCTGATCACT
Statistics
Matches: 353, Mismatches: 76, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
119 139 0.39
120 205 0.58
121 8 0.02
122 1 0.00
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (120 bp):
TCACTTGATCTTGACTCAGTCCAGATCATTTCTTATGATTCGTGATTTCATCCCAGTCATTTATT
TTTGACCTCGACTCGATCTTAGTCACTTTATTTTTGACTTGTGGTTTCTCCCCGA
Found at i:8335992 original size:26 final size:26
Alignment explanation
Indices: 8335952--8336010 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
8335942 CTGTAGACAT
* * * *
8335952 CCATTTATGTTCAGGCCCAATTAGGC
1 CCATTGATGTCCAGGCCCAAGTAGAC
*
8335978 CCATTGATGTCCAGGCTCAAGTAGAC
1 CCATTGATGTCCAGGCCCAAGTAGAC
8336004 CCATTGA
1 CCATTGA
8336011 CATTTAGGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
CCATTGATGTCCAGGCCCAAGTAGAC
Found at i:8336068 original size:25 final size:25
Alignment explanation
Indices: 8336017--8336068 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
8336007 TTGACATTTA
* *
8336017 GGCTTAAGTAGGCCCATTTGTGTCT
1 GGCTTAAGTAGGCCCATCTGTGCCT
*
8336042 GGCTTAATTAGGCCCATCCT-TGCCT
1 GGCTTAAGTAGGCCCAT-CTGTGCCT
8336067 GG
1 GG
8336069 GTCCAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.15, C:0.25, G:0.27, T:0.33
Consensus pattern (25 bp):
GGCTTAAGTAGGCCCATCTGTGCCT
Found at i:8337198 original size:18 final size:18
Alignment explanation
Indices: 8337175--8337212 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8337165 TTTCTTATTT
8337175 TTTATTACTT-ATTCTTTA
1 TTTATTACTTAATT-TTTA
*
8337193 TTTATTAGTTAATTTTTA
1 TTTATTACTTAATTTTTA
8337211 TT
1 TT
8337213 ATTTAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTATTACTTAATTTTTA
Found at i:8337210 original size:14 final size:14
Alignment explanation
Indices: 8337193--8337223 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8337183 TTATTCTTTA
8337193 TTTATTAGTTAATT
1 TTTATTAGTTAATT
*
8337207 TTTATTATTTAATT
1 TTTATTAGTTAATT
8337221 TTT
1 TTT
8337224 TAACAAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (14 bp):
TTTATTAGTTAATT
Found at i:8337567 original size:19 final size:19
Alignment explanation
Indices: 8337529--8337568 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8337519 CATAAATATT
* *
8337529 AATAAAATAATATATAAAA
1 AATAAAAAAATATAAAAAA
*
8337548 AATAAAAAAATTTAAAAAA
1 AATAAAAAAATATAAAAAA
8337567 AA
1 AA
8337569 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (19 bp):
AATAAAAAAATATAAAAAA
Found at i:8338718 original size:48 final size:48
Alignment explanation
Indices: 8338628--8339011 Score: 298
Period size: 49 Copynumber: 7.9 Consensus size: 48
8338618 TTTTTAATTT
* ** *
8338628 AAAAAGCTCCTCTAATAAGAGACTCAACAACTTTAAAAATTCATCTTG
1 AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATCTTG
*
8338676 AAAAAGGCTCTTCTAAGTAGAGGCTCAACAACTTT-AAAATTCATCTTGG
1 AAAAA-GCTCTTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATCTT-G
* * * *
8338725 AAAAGGCTCTTCCAAGCAGAGACTCAACAA-TTTAAAAAATTCATATTGG
1 AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTT-AAAAATTCATCTT-G
* * * * *
8338774 AAAAGGCTCCTT-TAAGTAAAGGCTCAATAACTTT-AAAATTCATCTCAG
1 AAAAAGCT-CTTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATCT-TG
* * * * *
8338822 GAAAAGCTCCTT-TAAACAGAAGCTCAACGACTTTAAAAATTCATTTTGG
1 AAAAAGCT-CTTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATCTT-G
* * * * *
8338871 AAAAA-CT-TCTCTAAACAGA-GCTCCATAACTTTAAAAAATCATATTGG
1 AAAAAGCTCT-TCTAAGCAGAGGCTCAACAACTTTAAAAATTCATCTT-G
* * *
8338918 TAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATATTGG
1 AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATCTT-G
* * * * * * *
8338967 GAAAAGTTCCTCTAAGCAAAGGATTAATAACTTTAAAAATCTCAT
1 AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAAAT-TCAT
8339012 ATGTTCTCGA
Statistics
Matches: 277, Mismatches: 44, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
46 1 0.00
47 31 0.11
48 97 0.35
49 138 0.50
50 10 0.04
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (48 bp):
AAAAAGCTCTTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATCTTG
Found at i:8338763 original size:97 final size:96
Alignment explanation
Indices: 8338629--8338965 Score: 357
Period size: 97 Copynumber: 3.5 Consensus size: 96
8338619 TTTTAATTTA
* ** *
8338629 AAAAGCTCCTCTAATAAGAGACTCAACAACTTTAAAAATTCATCTTGAAAAAGGCTCTTCTAAGT
1 AAAAGCTCTTCTAAGCAGAGACTCAACAACTTTAAAAATTCATATTGAAAAAGGCTCTTCTAAGT
*
8338694 AGAGGCTCAACAACTTTAAAATTCATCTTGG
66 AGAGGCTCAATAACTTTAAAATTCATCTTGG
* *
8338725 AAAAGGCTCTTCCAAGCAGAGACTCAACAA-TTTAAAAAATTCATATTGGAAAAGGCTCCTT-TA
1 AAAA-GCTCTTCTAAGCAGAGACTCAACAACTTT-AAAAATTCATATTGAAAAAGGCT-CTTCTA
* *
8338788 AGTAAAGGCTCAATAACTTTAAAATTCATCTCAGG
63 AGTAGAGGCTCAATAACTTTAAAATTCATCT-TGG
* * *
8338823 AAAAGCTCCTT-TAAACAGA-AGCTCAACGACTTTAAAAATTCATTTTGGAAAAA--CT-TCTCT
1 AAAAGCT-CTTCTAAGCAGAGA-CTCAACAACTTTAAAAATTCATATT-GAAAAAGGCTCT-TCT
** * * *
8338883 AAACAGA-GCTCCATAACTTTAAAAAATCATATTGG
62 AAGTAGAGGCTCAATAACTTT-AAAATTCATCTTGG
* *
8338918 TAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTCATATTG
1 -AAAAGCTCTTCTAAGCAGAGACTCAACAACTTTAAAAATTCATATTG
8338966 GGAAAAGTTC
Statistics
Matches: 201, Mismatches: 26, Indels: 29
0.79 0.10 0.11
Matches are distributed among these distances:
94 1 0.00
95 18 0.09
96 61 0.30
97 101 0.50
98 20 0.10
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (96 bp):
AAAAGCTCTTCTAAGCAGAGACTCAACAACTTTAAAAATTCATATTGAAAAAGGCTCTTCTAAGT
AGAGGCTCAATAACTTTAAAATTCATCTTGG
Found at i:8351399 original size:22 final size:24
Alignment explanation
Indices: 8351354--8351400 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8351344 ATAAATATTT
* *
8351354 TAATATGTATAAATATTAATAAAA
1 TAATATATAAAAATATTAATAAAA
8351378 TAATATATAAAAAT-TTAA-AAAA
1 TAATATATAAAAATATTAATAAAA
8351400 T
1 T
8351401 TCAAAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.24
23 4 0.19
24 12 0.57
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (24 bp):
TAATATATAAAAATATTAATAAAA
Found at i:8352849 original size:19 final size:18
Alignment explanation
Indices: 8352825--8352866 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
8352815 CAGGTTTCCT
8352825 TTTTTTCATTTTATTTTTA
1 TTTTTTCATTTTA-TTTTA
*
8352844 TTTTTTTATTTTATTTTA
1 TTTTTTCATTTTATTTTA
8352862 TTTTT
1 TTTTT
8352867 AACCCATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTCATTTTATTTTA
Found at i:8353000 original size:20 final size:20
Alignment explanation
Indices: 8352977--8353015 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8352967 TATATTCTTT
*
8352977 AAAAAAAATCTTTTCAAATG
1 AAAAAAAATATTTTCAAATG
*
8352997 AAAAAATATATTTTCAAAT
1 AAAAAAAATATTTTCAAAT
8353016 AAAGTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (20 bp):
AAAAAAAATATTTTCAAATG
Found at i:8353763 original size:12 final size:12
Alignment explanation
Indices: 8353741--8353775 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
8353731 ATGAGATGAA
8353741 ATAAA-ATAAAT
1 ATAAATATAAAT
8353752 ATAAATATAAAT
1 ATAAATATAAAT
8353764 ATAAAATATAAA
1 AT-AAATATAAA
8353776 AAATTAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 5 0.23
12 8 0.36
13 9 0.41
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAAATATAAAT
Found at i:8353776 original size:7 final size:6
Alignment explanation
Indices: 8353741--8353775 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
8353731 ATGAGATGAA
8353741 ATAAA- ATAAAT ATAAAT ATAAAT ATAAAAT ATAAA
1 ATAAAT ATAAAT ATAAAT ATAAAT AT-AAAT ATAAA
8353776 AAATTAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.18
6 17 0.61
7 6 0.21
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (6 bp):
ATAAAT
Found at i:8358958 original size:62 final size:62
Alignment explanation
Indices: 8358891--8359033 Score: 166
Period size: 62 Copynumber: 2.3 Consensus size: 62
8358881 ATTTCAGGTA
* ** * * * *
8358891 AAAAATACCTTAAATAATCCTTTTTAATTTT-TTAGAGGGGATTATT-AAAGCTGTTTTATG-CG
1 AAAAATACCTTTAATAATCCCCTTAAATTTTGATA-AGGAGATTATTGAAAG-TGTTTT-TGACC
8358953 AAAAATACCTTTAATAATCCCCTTAAATTTTGATAAGGAGATTATTGAAAGTGTTTTTGACC
1 AAAAATACCTTTAATAATCCCCTTAAATTTTGATAAGGAGATTATTGAAAGTGTTTTTGACC
*
8359015 AAAAACACCTTTAATAATC
1 AAAAATACCTTTAATAATC
8359034 TCCTCCAAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
61 2 0.03
62 62 0.89
63 6 0.09
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38
Consensus pattern (62 bp):
AAAAATACCTTTAATAATCCCCTTAAATTTTGATAAGGAGATTATTGAAAGTGTTTTTGACC
Found at i:8366288 original size:2 final size:2
Alignment explanation
Indices: 8366281--8366339 Score: 77
Period size: 2 Copynumber: 30.5 Consensus size: 2
8366271 ACTTTTGTTT
* *
8366281 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
8366323 -A TA TA TG TA TA -A TA TA T
1 TA TA TA TA TA TA TA TA TA T
8366340 GGTAATACGG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
1 2 0.04
2 49 0.96
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:8370345 original size:15 final size:15
Alignment explanation
Indices: 8370325--8370359 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8370315 AACAAAAAAC
*
8370325 AAATAATGAATAAAT
1 AAATAATAAATAAAT
*
8370340 AAATAATAAATGAAT
1 AAATAATAAATAAAT
8370355 AAATA
1 AAATA
8370360 TGTAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AAATAATAAATAAAT
Found at i:8370831 original size:21 final size:21
Alignment explanation
Indices: 8370785--8370831 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
8370775 GAACTTGGAA
* *
8370785 TGAAAATTTTTATATAAGGAT
1 TGAATATTTTTATACAAGGAT
*
8370806 TGAATATTTTTATACAGGGAT
1 TGAATATTTTTATACAAGGAT
8370827 TGAAT
1 TGAAT
8370832 TTCTTTTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (21 bp):
TGAATATTTTTATACAAGGAT
Found at i:8370991 original size:2 final size:2
Alignment explanation
Indices: 8370984--8371008 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8370974 TTACCCAATA
8370984 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8371009 AAGAAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8373187 original size:38 final size:38
Alignment explanation
Indices: 8373127--8373205 Score: 122
Period size: 38 Copynumber: 2.1 Consensus size: 38
8373117 ATGCTTTACC
*
8373127 CTACCCATCCCTTATCCGTTAACATCACTACTCAAGGA
1 CTACCCATCCCTTATCCATTAACATCACTACTCAAGGA
* * *
8373165 CTACTCATCCCTTATCTATTAACATCACTAGTCAAGGA
1 CTACCCATCCCTTATCCATTAACATCACTACTCAAGGA
8373203 CTA
1 CTA
8373206 GAAGAGTGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.33, G:0.08, T:0.29
Consensus pattern (38 bp):
CTACCCATCCCTTATCCATTAACATCACTACTCAAGGA
Found at i:8373223 original size:3 final size:3
Alignment explanation
Indices: 8373215--8373254 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
8373205 AGAAGAGTGT
8373215 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
8373255 AACAAATCCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8374234 original size:2 final size:2
Alignment explanation
Indices: 8374227--8374252 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8374217 GTGTCATCTC
8374227 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8374253 CTTCGTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8374416 original size:21 final size:22
Alignment explanation
Indices: 8374388--8374433 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
8374378 TCTCACATTC
*
8374388 TTTTAAAATATA-TTAA-AATT
1 TTTTAAAATAAATTTAATAATT
8374408 TTTTAAAAATAAATTTAATAATT
1 TTTT-AAAATAAATTTAATAATT
8374431 TTT
1 TTT
8374434 AAATATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 4 0.18
21 7 0.32
22 4 0.18
23 7 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTTAAAATAAATTTAATAATT
Found at i:8374752 original size:24 final size:25
Alignment explanation
Indices: 8374706--8374755 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
8374696 AAATTATATT
8374706 CTCTTTCTTTTTTTGAATATTTAAAA
1 CTCTTTCTTTTTTT-AATATTTAAAA
8374732 CTCTTTACTTTTTTT-AT-TTTAAAA
1 CTCTTT-CTTTTTTTAATATTTAAAA
8374756 TTATTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 7 0.30
25 2 0.09
26 6 0.26
27 8 0.35
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (25 bp):
CTCTTTCTTTTTTTAATATTTAAAA
Found at i:8375602 original size:38 final size:35
Alignment explanation
Indices: 8375554--8375624 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 35
8375544 TTTATTTTTT
*
8375554 CATACCCGATCCCGACCCGAACCCGATATTATATAATC
1 CATACCCGAT-CCGACCCG-ACCCGAAATTA-ATAATC
*
8375592 CATACCCGATCTGACCCGACCCGAAATTAATAA
1 CATACCCGATCCGACCCGACCCGAAATTAATAA
8375625 AAATATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
35 4 0.13
36 10 0.32
37 7 0.23
38 10 0.32
ACGTcount: A:0.34, C:0.35, G:0.11, T:0.20
Consensus pattern (35 bp):
CATACCCGATCCGACCCGACCCGAAATTAATAATC
Found at i:8375658 original size:30 final size:30
Alignment explanation
Indices: 8375621--8375685 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
8375611 CCCGAAATTA
* *
8375621 ATAAAAATATTATTTTTTAAATATAAATAT
1 ATAAAAATATTATTATATAAATATAAATAT
* *
8375651 TTAAAAATATTATTATATAAATATATATAT
1 ATAAAAATATTATTATATAAATATAAATAT
8375681 ATAAA
1 ATAAA
8375686 TAAATAATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (30 bp):
ATAAAAATATTATTATATAAATATAAATAT
Found at i:8375697 original size:12 final size:11
Alignment explanation
Indices: 8375682--8375717 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 11
8375672 TATATATATA
8375682 TAAATAAATAAT
1 TAAA-AAATAAT
8375694 TAAAAAATTAAT
1 TAAAAAA-TAAT
8375706 TAAAAAATAAT
1 TAAAAAATAAT
8375717 T
1 T
8375718 TTTTAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAAAAATAAT
Found at i:8376029 original size:55 final size:55
Alignment explanation
Indices: 8375945--8376055 Score: 177
Period size: 55 Copynumber: 2.0 Consensus size: 55
8375935 GTGGACCCAC
* *
8375945 TTATAATCTGAAGATCTATGTATTGTTAATCCTAAATTATCCTCGTTTATAAATT
1 TTATAATCTGAAGATATATGCATTGTTAATCCTAAATTATCCTCGTTTATAAATT
* * *
8376000 TTATAATCTGCATATATATGCATTGTTAATCCTAAATTATCCTCTTTTATAAATT
1 TTATAATCTGAAGATATATGCATTGTTAATCCTAAATTATCCTCGTTTATAAATT
8376055 T
1 T
8376056 CGTAACTCCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.47
Consensus pattern (55 bp):
TTATAATCTGAAGATATATGCATTGTTAATCCTAAATTATCCTCGTTTATAAATT
Found at i:8376221 original size:16 final size:16
Alignment explanation
Indices: 8376200--8376230 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8376190 TCTCTATATA
*
8376200 TATATATATATATTTG
1 TATATATATAAATTTG
8376216 TATATATATAAATTT
1 TATATATATAAATTT
8376231 ACTTTCACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (16 bp):
TATATATATAAATTTG
Found at i:8387820 original size:126 final size:127
Alignment explanation
Indices: 8387557--8388502 Score: 811
Period size: 126 Copynumber: 7.6 Consensus size: 127
8387547 ATCTCAGGGT
* * * * * *
8387557 AAAACA-TTTAAAATTTTTAAAGTTGCAATGCCTTTAATACATGAGGAGTATTCAAAGATTTTAA
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCT-AT-TATGAGGAGCATTCAAAGATTTTGA
* *
8387621 GATTTGTAAGACCTCTAAGCATAATCTTTAAAACCTCTTG-GCATAATTTTTAAGACCTTCGGGC
64 GATTTGTAAGACCTCTAAGCATAATCTCTAAAACCT-TTGAGCATAATTTTTAAGACCTTCAGGC
* * * *
8387685 TAAAC-TTTTAAAATTTTTAAAGTTTCAATGCCTCTATTACGAGGAGCATTCAAAGATTTTGATA
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTATGAGGAGCATTCAAAGATTTTGAGA
* * * *
8387749 TTTGTAAGA-CTCCAAGCATAATCTCTAAAACCTTTGAACATAATTTTCGAA-ACCTCCAGGC
66 TTTGTAAGACCTCTAAGCATAATCTCTAAAACCTTTGAGCATAATTTT-TAAGACCTTCAGGC
*
8387810 GAAACATTTT-AAATTTTCAAAGTTTCAATG-CTCTATTATGA-GATGCATTCAAAGATTTTGAG
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTATGAGGA-GCATTCAAAGATTTTGAG
* ** * * * * * *
8387872 ATTTGTGAA-ACCTTTGGGCATAATCTCTAAGATCTTTGAACATAATTTTCAAGACCTCTTA-CC
65 ATTTGT-AAGACCTCTAAGCATAATCTCTAAAACCTTTGAGCATAATTTTTAAGACCT-TCAGGC
* * ** *
8387935 AAAATATTTT-AAATTTTCAAAATTTCAACACTTCTATTATGAGGAGCATTCAAAGATTTTGAGA
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTATGAGGAGCATTCAAAGATTTTGAGA
* * * * ** *
8387999 TTTGTAAGACCTCCAAGCATAATATTTAAGACC-TCCAGGCATAATTTTTAAGACCTTAAGGC
66 TTTGTAAGACCTCTAAGCATAATCTCTAAAACCTTTGA-GCATAATTTTTAAGACCTTCAGGC
* * * * * *
8388061 AAAAAATTTTAAAA-TTTCAAAGTTTTAGTG-CTTTCGTTATAAGGAGCATTCAAAGATTTTGAG
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCT-ATTATGAGGAGCATTCAAAGATTTTGAG
* ** ** * ** **
8388124 ATTTGTAAGACCTTTGGGCATAATCTCTAAAACCACT-AGGCATAATTTTCAAGA-CTTTTGAAT
65 ATTTGTAAGACCTCTAAGCATAATCTCTAAAACCTTTGA-GCATAATTTTTAAGACCTTCAG-GC
** *
8388187 AAAACATTTTAAAA-TTTCAAAGTTTCAATATCTCTATTACGAGGAGCATTCAAAGATTTTGAGA
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTATGAGGAGCATTCAAAGATTTTGAGA
* * * *
8388251 TTTGTAAGACCTCTGAGCATAATCTCTAAAA-CTTTCGAGCATAATTTTTAATACCTGC-GAGT
66 TTTGTAAGACCTCTAAGCATAATCTCTAAAACCTTT-GAGCATAATTTTTAAGACCTTCAG-GC
* ** * *
8388313 AAAACATTTT-AAATTTTTAAAGTTTCAACACCTCTATTATAAGGAGCATACAAAGATTTTGAGA
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTATGAGGAGCATTCAAAGATTTTGAGA
* * * * * * ** * *
8388377 TTTGTAAAACTTTTAGGCATAATC-CT------TTAG-GTATAATTTCCAAGACC-TCCGAAC
66 TTTGTAAGACCTCTAAGCATAATCTCTAAAACCTTTGAGCATAATTTTTAAGACCTTCAG-GC
* * ** * *
8388431 AAAACA-TTTAAAA-TTTCAAAGTTTCAATGCTTTTATTACAAAGAGCATTCAAAGATTTCGAGA
1 AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTATGAGGAGCATTCAAAGATTTTGAGA
8388494 TTTGTAAGA
66 TTTGTAAGA
8388503 TATTTGGGAA
Statistics
Matches: 676, Mismatches: 117, Indels: 61
0.79 0.14 0.07
Matches are distributed among these distances:
117 53 0.08
118 24 0.04
119 1 0.00
120 2 0.00
123 2 0.00
124 39 0.06
125 145 0.21
126 366 0.54
127 13 0.02
128 31 0.05
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (127 bp):
AAAACATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTATGAGGAGCATTCAAAGATTTTGAGA
TTTGTAAGACCTCTAAGCATAATCTCTAAAACCTTTGAGCATAATTTTTAAGACCTTCAGGC
Found at i:8388028 original size:22 final size:22
Alignment explanation
Indices: 8388003--8388054 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
8387993 TTGAGATTTG
8388003 TAAGACCTCCAAGCATAATATT
1 TAAGACCTCCAAGCATAATATT
* *
8388025 TAAGACCTCCAGGCATAATTTT
1 TAAGACCTCCAAGCATAATATT
8388047 TAAGACCT
1 TAAGACCT
8388055 TAAGGCAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.29
Consensus pattern (22 bp):
TAAGACCTCCAAGCATAATATT
Found at i:8388060 original size:22 final size:22
Alignment explanation
Indices: 8387998--8388061 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
8387988 AGATTTTGAG
*
8387998 ATTTGTAAGACCTCCAA-GCATA
1 ATTTTTAAGACCT-CAAGGCATA
* *
8388020 ATATTTAAGACCTCCAGGCATA
1 ATTTTTAAGACCTCAAGGCATA
*
8388042 ATTTTTAAGACCTTAAGGCA
1 ATTTTTAAGACCTCAAGGCA
8388062 AAAAATTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 2 0.06
22 33 0.94
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (22 bp):
ATTTTTAAGACCTCAAGGCATA
Found at i:8388399 original size:378 final size:376
Alignment explanation
Indices: 8387555--8388502 Score: 975
Period size: 378 Copynumber: 2.5 Consensus size: 376
8387545 AGATCTCAGG
* * ** * * * *
8387555 GTAAAACATTTAAAATTTTTAAAGTTGCAATGCCTTTAATACATGAGGAGTATTCAAAGATTTTA
1 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCT-AT-TATGAGGAGCATTCAAAGATTTTG
* ** **
8387620 AGATTTGTAAGACCTCTAAGCATAATCTTTAAAACCTCTTGGCATAATTTTTAAGACCTTCGGGC
64 AGATTTGTAAGACCTCTAAGCATAATATTTAAAACCTCCAGGCATAATTTTTAAGACCTTAAGGC
* * * * *
8387685 TAAACTTTTAAAATTTTTAAAGTTTCAATGCCTCTATTACGAGGAGCATTCAAAGATTTTGATAT
129 AAAAATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTACAAGGAGCATTCAAAGATTTTGAGAT
* * * *
8387750 TTGTAAGACTCCAAGCATAATCTCTAAAACCTTTGAACATAATTTTCGAAACCTCCAGGCGAAAC
194 TTGTAAGACTCCAAGCATAATCTCTAAAACCCTAGAACATAATTTTCGAAACCTCCAGACAAAAC
* *
8387815 ATTTTAAATTTTCAAAGTTTCAATGCTCTATTATGAGATGCATTCAAAGATTTTGAGATTTGTGA
259 ATTTTAAAATTTCAAAGTTTCAATGCTCTATTACGAGATGCATTCAAAGATTTTGAGATTTGTGA
* * * *
8387880 AACCTTTGGGCATAATCTCTAAGATCTTTGAACATAATTTTCAAGACCTCTTA
324 AACCTCTGAGCATAATCTCTAAGAACTTTGAACATAATTTTCAAGACCTCTGA
** * * * *
8387933 CCAAAATATTTTAAATTTTCAAAATTTCAACACTTCTATTATGAGGAGCATTCAAAGATTTTGAG
1 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTATTATGAGGAGCATTCAAAGATTTTGAG
* *
8387998 ATTTGTAAGACCTCCAAGCATAATATTTAAGACCTCCAGGCATAATTTTTAAGACCTTAAGGCAA
66 ATTTGTAAGACCTCTAAGCATAATATTTAAAACCTCCAGGCATAATTTTTAAGACCTTAAGGC-A
* * * * *
8388063 AAAATTTTAAAA-TTTCAAAGTTTTAGTG-CTTTCGTTATAAGGAGCATTCAAAGATTTTGAGAT
130 AAAATTTTAAAATTTTCAAAGTTTCAATGCCTCT-ATTACAAGGAGCATTCAAAGATTTTGAGAT
**** * *** *
8388126 TTGTAAGACCTTTGGGCATAATCTCTAAAACCACTAG-GCATAATTTTC-AAGA-CTTTTGAATA
194 TTGTAAGA-CTCCAAGCATAATCTCTAAAACC-CTAGAACATAATTTTCGAA-ACCTCCAG-ACA
*
8388188 AAACATTTTAAAATTTCAAAGTTTCAATATCTCTATTACGAGGA-GCATTCAAAGATTTTGAGAT
255 AAACATTTTAAAATTTCAAAGTTTCAAT-GCTCTATTACGA-GATGCATTCAAAGATTTTGAGAT
* * *
8388252 TTGT-AAGACCTCTGAGCATAATCTCTAA-AACTTTCGAGCATAATTTTTAATACCTGC-GA
318 TTGTGAA-ACCTCTGAGCATAATCTCTAAGAACTTT-GAACATAATTTTCAAGACCT-CTGA
* *
8388311 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTATTATAAGGAGCATACAAAGATTTTGAG
1 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTATTATGAGGAGCATTCAAAGATTTTGAG
* * * * ** * ** *
8388376 ATTTGTAAAACTTTTAGGCAT-A-A--T----CCTTTAGGTATAATTTCCAAGACCTCCGAA--C
66 ATTTGTAAGACCTCTAAGCATAATATTTAAAACCTCCAGGCATAATTTTTAAGACCT--TAAGGC
* * * *
8388431 AAAACA-TTTAAAA-TTTCAAAGTTTCAATGCTTTTATTACAAAGAGCATTCAAAGATTTCGAGA
129 AAAA-ATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTACAAGGAGCATTCAAAGATTTTGAGA
8388494 TTTGTAAGA
193 TTTGTAAGA
8388503 TATTTGGGAA
Statistics
Matches: 475, Mismatches: 80, Indels: 39
0.80 0.13 0.07
Matches are distributed among these distances:
369 59 0.12
370 25 0.05
372 2 0.00
374 1 0.00
375 3 0.01
376 132 0.28
377 78 0.16
378 172 0.36
379 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.35
Consensus pattern (376 bp):
GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTATTATGAGGAGCATTCAAAGATTTTGAG
ATTTGTAAGACCTCTAAGCATAATATTTAAAACCTCCAGGCATAATTTTTAAGACCTTAAGGCAA
AAATTTTAAAATTTTCAAAGTTTCAATGCCTCTATTACAAGGAGCATTCAAAGATTTTGAGATTT
GTAAGACTCCAAGCATAATCTCTAAAACCCTAGAACATAATTTTCGAAACCTCCAGACAAAACAT
TTTAAAATTTCAAAGTTTCAATGCTCTATTACGAGATGCATTCAAAGATTTTGAGATTTGTGAAA
CCTCTGAGCATAATCTCTAAGAACTTTGAACATAATTTTCAAGACCTCTGA
Found at i:8389824 original size:15 final size:16
Alignment explanation
Indices: 8389804--8389836 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8389794 CTTTACGAGA
8389804 ACCTCAT-AAAACCAC
1 ACCTCATCAAAACCAC
8389819 ACCTCATCGAAAACCAC
1 ACCTCATC-AAAACCAC
8389836 A
1 A
8389837 AAATACACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.45, C:0.39, G:0.03, T:0.12
Consensus pattern (16 bp):
ACCTCATCAAAACCAC
Found at i:8397775 original size:25 final size:25
Alignment explanation
Indices: 8397747--8397801 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
8397737 CAACAATGTG
* *
8397747 CTCAGACACACCCTTCAACAAACCA
1 CTCAGAAACACCATTCAACAAACCA
* *
8397772 CTCAAAAACACCATTCGACAAACCA
1 CTCAGAAACACCATTCAACAAACCA
*
8397797 TTCAG
1 CTCAG
8397802 CATATGATTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.42, C:0.38, G:0.05, T:0.15
Consensus pattern (25 bp):
CTCAGAAACACCATTCAACAAACCA
Found at i:8397991 original size:80 final size:78
Alignment explanation
Indices: 8397820--8398027 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 78
8397810 TCAGTCTCCC
* * * * *
8397820 AATATCATACAAAACCATTTAGCAAAATAATATCAGACAACAAGCTTCAGCAAACCTTAAACATA
1 AATATCATACAATACCATTTAGCAAAACAATAACAGACAACAAGCTTCAGAAAACATTAAACATA
** *
8397885 TGATTCAGCCCCT
66 CAATTCAACCCCT
* * * * * *
8397898 AATATCATACAATACCATTTGGGAAAACAATAACAGACAATAAGGTTCAGAAAATCATTCAGCAT
1 AATATCATACAATACCATTTAGCAAAACAATAACAGACAACAAGCTTCAGAAAA-CATTAAACAT
8397963 ACAATTCAAACCCCT
65 ACAATTC-AACCCCT
* * ** *
8397978 AATATCATACAATACCATTCAGCAAAATAATATTAGACAACAAGGTTCAG
1 AATATCATACAATACCATTTAGCAAAACAATAACAGACAACAAGCTTCAG
8398028 CAATCTACAA
Statistics
Matches: 107, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 46 0.43
79 12 0.11
80 49 0.46
ACGTcount: A:0.46, C:0.22, G:0.09, T:0.23
Consensus pattern (78 bp):
AATATCATACAATACCATTTAGCAAAACAATAACAGACAACAAGCTTCAGAAAACATTAAACATA
CAATTCAACCCCT
Found at i:8399069 original size:146 final size:146
Alignment explanation
Indices: 8398883--8399173 Score: 442
Period size: 146 Copynumber: 2.0 Consensus size: 146
8398873 TTTTGGAAGA
8398883 AAATTATTGAAGGTATTTATTATTAATAAACACATTCAATATTTATGTAAAAAATTTAAAACA-A
1 AAATTATTGAAGGTATTTATTATTAATAAACACATTCAATATTTATGTAAAAAATTTAAAA-AGA
* * *
8398947 ATTATTAAAGGCATTTGTCAATA-AAAGATGCCTTTAATAATCTTAAAATTTTTTAGAGAAAAAA
65 ATTATTAAAGACATTTGTCAATAGAAA-ACGCCTTTAATAATCCTAAAATTTTTTAGAGAAAAAA
*
8399011 TACTAAAGGTGTTTGTTG
129 TACTAAAGGTATTTGTTG
* *
8399029 AAATTATTGAAGGTGTTTATTATTAATAAACACATTCAATATTTATGTAGAAAATTTAAAAAGAA
1 AAATTATTGAAGGTATTTATTATTAATAAACACATTCAATATTTATGTAAAAAATTTAAAAAGAA
* * * * *
8399094 TTATTGAAGATATTTGTCAGTAGAAAACGCCTTTAATAATCCTAAAATTTTTTAGAGGAAAATTA
66 TTATTAAAGACATTTGTCAATAGAAAACGCCTTTAATAATCCTAAAATTTTTTAGAGAAAAAATA
*
8399159 TTAAAGGTATTTGTT
131 CTAAAGGTATTTGTT
8399174 ATTAACAAAC
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
145 1 0.01
146 127 0.97
147 3 0.02
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (146 bp):
AAATTATTGAAGGTATTTATTATTAATAAACACATTCAATATTTATGTAAAAAATTTAAAAAGAA
TTATTAAAGACATTTGTCAATAGAAAACGCCTTTAATAATCCTAAAATTTTTTAGAGAAAAAATA
CTAAAGGTATTTGTTG
Found at i:8408712 original size:4 final size:4
Alignment explanation
Indices: 8408703--8408729 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8408693 CAATTATTAT
8408703 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
8408730 TACATTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:8412909 original size:7 final size:7
Alignment explanation
Indices: 8412892--8412924 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8412882 ATGATCAAAC
8412892 AAAAAAG
1 AAAAAAG
8412899 -AAAAAG
1 AAAAAAG
8412905 AAAAAAG
1 AAAAAAG
8412912 AGAAAAAG
1 A-AAAAAG
8412920 AAAAA
1 AAAAA
8412925 TTAAGCTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:8412915 original size:15 final size:14
Alignment explanation
Indices: 8412892--8412924 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
8412882 ATGATCAAAC
8412892 AAAAAAGAAAAAGA
1 AAAAAAGAAAAAGA
8412906 AAAAAGAGAAAAAGA
1 AAAAA-AGAAAAAGA
8412921 AAAA
1 AAAA
8412925 TTAAGCTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAAAAAGAAAAAGA
Found at i:8413876 original size:69 final size:69
Alignment explanation
Indices: 8413744--8413877 Score: 153
Period size: 69 Copynumber: 1.9 Consensus size: 69
8413734 CATGCATTTA
* * * *
8413744 TATTATATGATGAGTATATAGATGATTATTTTGAACGTTGCATTTGCATTATCGTTTGAACCATG
1 TATTATATGATGAGTATATAGATCATTATTTTGAACATTGCATTTGCATAATCATTTGAACCATG
8413809 TTTG
66 TTTG
* * * ** * *
8413813 TATTATTTGGTGAGTATATAGATCATTGTTTTGAGTATTGTATTTGCATCAAT-ATTTGGACCAT
1 TATTATATGATGAGTATATAGATCATTATTTTGAACATTGCATTTGCAT-AATCATTTGAACCAT
8413877 G
65 G
8413878 CATTTGCATT
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
69 51 0.96
70 2 0.04
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (69 bp):
TATTATATGATGAGTATATAGATCATTATTTTGAACATTGCATTTGCATAATCATTTGAACCATG
TTTG
Found at i:8413952 original size:24 final size:24
Alignment explanation
Indices: 8413924--8413984 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
8413914 TTGATAATTT
*
8413924 CATTTGCATCATGGTTTAGACATG
1 CATTTGCATCATGGTTTAAACATG
* *
8413948 CATTTGTATCATAGTTTAAACATG
1 CATTTGCATCATGGTTTAAACATG
8413972 CATTTGCATCATG
1 CATTTGCATCATG
8413985 TGGTAAACAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.39
Consensus pattern (24 bp):
CATTTGCATCATGGTTTAAACATG
Found at i:8413991 original size:24 final size:24
Alignment explanation
Indices: 8413924--8413994 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
8413914 TTGATAATTT
*
8413924 CATTTGCATCATG-GTTTAGACATG
1 CATTTGCATCATGTG-TTAAACATG
*
8413948 CATTTGTATCATAGT-TTAAACATG
1 CATTTGCATCAT-GTGTTAAACATG
*
8413972 CATTTGCATCATGTGGTAAACAT
1 CATTTGCATCATGTGTTAAACAT
8413995 TTGAATCATA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 2 0.05
24 37 0.93
25 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (24 bp):
CATTTGCATCATGTGTTAAACATG
Found at i:8414269 original size:38 final size:38
Alignment explanation
Indices: 8414175--8414268 Score: 127
Period size: 38 Copynumber: 2.5 Consensus size: 38
8414165 TTTTGAATTT
* *
8414175 TCAAATGAGGAAAATTTTTCATCATGAGATTTAAATCC
1 TCAAATGAGGAAAATTTTTCAACATGAGATTTAAATCA
* * **
8414213 TCATATGATGAAAATTTTTCAACATGAGATTTGTATCA
1 TCAAATGAGGAAAATTTTTCAACATGAGATTTAAATCA
8414251 TCAAATGA-GAAAATTTTT
1 TCAAATGAGGAAAATTTTT
8414269 TTTAAAATGA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
37 10 0.20
38 39 0.80
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (38 bp):
TCAAATGAGGAAAATTTTTCAACATGAGATTTAAATCA
Found at i:8414367 original size:76 final size:76
Alignment explanation
Indices: 8414266--8414415 Score: 273
Period size: 76 Copynumber: 2.0 Consensus size: 76
8414256 TGAGAAAATT
* * *
8414266 TTTTTTAAAATGACATTTTGAATTCTCAAATAAAGAAGATCTTTTATGATAAGATTTTTTGGATG
1 TTTTTCAAAATGAAATTTTGAATTCTCAAATAAAAAAGATCTTTTATGATAAGATTTTTTGGATG
8414331 AGTAAAACAAC
66 AGTAAAACAAC
8414342 TTTTTCAAAATGAAATTTTGAATTCTCAAATAAAAAAGATCTTTTATGATAAGATTTTTTGGATG
1 TTTTTCAAAATGAAATTTTGAATTCTCAAATAAAAAAGATCTTTTATGATAAGATTTTTTGGATG
8414407 AGTAAAACA
66 AGTAAAACA
8414416 TTCCAAACTT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 71 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (76 bp):
TTTTTCAAAATGAAATTTTGAATTCTCAAATAAAAAAGATCTTTTATGATAAGATTTTTTGGATG
AGTAAAACAAC
Found at i:8414684 original size:22 final size:22
Alignment explanation
Indices: 8414624--8414684 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
8414614 TTTTCGAGCA
8414624 AAATCTCTAAGAATTTTCAAATGT
1 AAATCT-T-AGAATTTTCAAATGT
* *
8414648 GAATCTTAGAGTTTTCAAATGT
1 AAATCTTAGAATTTTCAAATGT
*
8414670 AAATCTTTGAATTTT
1 AAATCTTAGAATTTT
8414685 GGATAGGAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 26 0.81
23 1 0.03
24 5 0.16
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (22 bp):
AAATCTTAGAATTTTCAAATGT
Found at i:8414745 original size:45 final size:45
Alignment explanation
Indices: 8414659--8414750 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
8414649 AATCTTAGAG
* * *
8414659 TTTTCAAATGTAAATCTTTGAATTTTGGATAGGAACCTTTAAGAT
1 TTTTCAAATCTAAAGCTTTGAATTTTGGATAGGAACCTTTAAAAT
* * **
8414704 TTTTCAAATCTGAAGCTTTGGATTTTGGAT-GCGAATTTTTAAAAT
1 TTTTCAAATCTAAAGCTTTGAATTTTGGATAG-GAACCTTTAAAAT
8414749 TT
1 TT
8414751 ATCGAACATG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (45 bp):
TTTTCAAATCTAAAGCTTTGAATTTTGGATAGGAACCTTTAAAAT
Found at i:8414920 original size:46 final size:46
Alignment explanation
Indices: 8414860--8415026 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
8414850 GAAACTTTAG
* * *
8414860 ATTTTGGATGTGAATCTTTATGGTTTTTTGAATGAGAATTTTTGAAA
1 ATTTTGGATGTGAATCTCTATAGTTTTTT-AATAAGAATTTTTGAAA
* * *
8414907 A-TTTAGATGTGAAT-TCCTATAGTTTTTTTAACAAGAA-TCTTGAAA
1 ATTTTGGATGTGAATCT-CTATAG-TTTTTTAATAAGAATTTTTGAAA
* *
8414952 ATTTTGGATGTGAATCTCTAAAGTTCTTTTAATCAGAATTTTT-AAA
1 ATTTTGGATGTGAATCTCTATAGTT-TTTTAATAAGAATTTTTGAAA
*
8414998 ATTTTGGATGTGAATCTCTGATACTTTTT
1 ATTTTGGATGTGAATCTCT-ATAGTTTTT
8415027 CAAATGTGAA
Statistics
Matches: 100, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
45 11 0.11
46 74 0.74
47 15 0.15
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (46 bp):
ATTTTGGATGTGAATCTCTATAGTTTTTTAATAAGAATTTTTGAAA
Found at i:8415119 original size:46 final size:45
Alignment explanation
Indices: 8415008--8415141 Score: 119
Period size: 47 Copynumber: 3.0 Consensus size: 45
8414998 ATTTTGGATG
* * *
8415008 TGAATCTCTGATACTTTTTCAAATGTGAATATTTGAAATCTTTTA
1 TGAATCTCTAATACTTTTTCGAATGAGAATATTTGAAATCTTTTA
* * * * * *
8415053 TGCAAATCTCTAAAAATTTTTCGAATGAGTATCTTTGAATTTTTTATA
1 TG--AATCTCTAATACTTTTTCGAATGAGAATATTTGAAATCTTT-TA
* **
8415101 TGAATCTCTAATACTTTTT-GAATAAGAAGCTTTGAAA-CTTT
1 TGAATCTCTAATACTTTTTCGAATGAGAATATTTGAAATCTTT
8415142 AGAAATGAAT
Statistics
Matches: 70, Mismatches: 16, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
44 3 0.04
45 16 0.23
46 15 0.21
47 32 0.46
48 4 0.06
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (45 bp):
TGAATCTCTAATACTTTTTCGAATGAGAATATTTGAAATCTTTTA
Found at i:8415233 original size:22 final size:23
Alignment explanation
Indices: 8415207--8415262 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 23
8415197 CTCAAATGAA
*
8415207 AATCTTTAAAA-TTTTGGATGTG
1 AATCTCTAAAATTTTTGGATGTG
8415229 AATCTCTAAAAGTTTTTTGGATGTG
1 AATCTCTAAAA--TTTTTGGATGTG
*
8415254 AATCACTAA
1 AATCTCTAA
8415263 CAAAAATCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 10 0.34
25 19 0.66
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (23 bp):
AATCTCTAAAATTTTTGGATGTG
Found at i:8415480 original size:22 final size:22
Alignment explanation
Indices: 8415454--8415524 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
8415444 CTAACCTTTG
*
8415454 AATTTCAAAATGTGAACTTTTA
1 AATTTCAAATTGTGAACTTTTA
*
8415476 AATTT--AATTATGAA-TCTTTA
1 AATTTCAAATTGTGAACT-TTTA
*
8415496 AATTTCAAATTGTGAAGC-TTTG
1 AATTTCAAATTGTGAA-CTTTTA
8415518 AATTTCA
1 AATTTCA
8415525 TGTTAGGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
19 1 0.03
20 16 0.40
22 23 0.57
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (22 bp):
AATTTCAAATTGTGAACTTTTA
Found at i:8415522 original size:42 final size:44
Alignment explanation
Indices: 8415449--8415550 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 44
8415439 TCTTGCTAAC
* *
8415449 CTTTGAATTTCAAAATGTGAACTTTTAAATTT-A-ATTATGAAT
1 CTTTGAATTTCAAATTGTGAACTTTTAAATTTCATATTAGGAAT
* * *
8415491 CTTTAAATTTCAAATTGTGAAGC-TTTGAATTTCATGTTAGGAAT
1 CTTTGAATTTCAAATTGTGAA-CTTTTAAATTTCATATTAGGAAT
*
8415535 CATTGAATTTCAAATT
1 CTTTGAATTTCAAATT
8415551 ACAAATTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 27 0.54
43 2 0.04
44 21 0.42
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (44 bp):
CTTTGAATTTCAAATTGTGAACTTTTAAATTTCATATTAGGAAT
Found at i:8417291 original size:88 final size:87
Alignment explanation
Indices: 8417185--8417347 Score: 222
Period size: 88 Copynumber: 1.9 Consensus size: 87
8417175 TTAAATTTCT
* * *
8417185 AAATTAAATCTTATCAAATTATT-GAAATATTTAATGATTTTTATAAAAAACTAAAA-AAATCCC
1 AAATTAAATATTACCAAATTATTAG-AAGATTTAATGATTTTTATAAAAAA--AAAATAAATCCC
8417248 ACTAAACTATTAGGAGATGTGCTTC
63 ACTAAACTATTAGGAGATGTGCTTC
* * **
8417273 AAATTAAATATTACCAAATTATTAGAAGATTTAATGATTTTTTTAAAAAAAAAATTAATCTTACT
1 AAATTAAATATTACCAAATTATTAGAAGATTTAATGATTTTTATAAAAAAAAAATAAATCCCACT
8417338 AAACTATTAG
66 AAACTATTAG
8417348 AGGTTTAAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
86 4 0.06
87 17 0.26
88 44 0.67
89 1 0.02
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (87 bp):
AAATTAAATATTACCAAATTATTAGAAGATTTAATGATTTTTATAAAAAAAAAATAAATCCCACT
AAACTATTAGGAGATGTGCTTC
Found at i:8418498 original size:182 final size:182
Alignment explanation
Indices: 8418191--8418555 Score: 721
Period size: 182 Copynumber: 2.0 Consensus size: 182
8418181 AAAATTGGTC
8418191 AAAATCAATCAAATCGAGTTAAACTTTGTTCAATTTTTCAAAATTCGAAACCAAATGGGACTAAT
1 AAAATCAATCAAATCGAGTTAAACTTTGTTCAATTTTTCAAAATTCGAAACCAAATGGGACTAAT
*
8418256 AGGGTTTGAAATTGGGATTTGTGATTTTAAAGCATTGAAAAACTTGAATGTACTTCAAGAAAAGT
66 AAGGTTTGAAATTGGGATTTGTGATTTTAAAGCATTGAAAAACTTGAATGTACTTCAAGAAAAGT
8418321 AAAATTATTAAAATACCCTTTAGGGGTATTTTCATAATTTGACCTTCTCAAA
131 AAAATTATTAAAATACCCTTTAGGGGTATTTTCATAATTTGACCTTCTCAAA
8418373 AAAATCAATCAAATCGAGTTAAACTTTGTTCAATTTTTCAAAATTCGAAACCAAATGGGACTAAT
1 AAAATCAATCAAATCGAGTTAAACTTTGTTCAATTTTTCAAAATTCGAAACCAAATGGGACTAAT
8418438 AAGGTTTGAAATTGGGATTTGTGATTTTAAAGCATTGAAAAACTTGAATGTACTTCAAGAAAAGT
66 AAGGTTTGAAATTGGGATTTGTGATTTTAAAGCATTGAAAAACTTGAATGTACTTCAAGAAAAGT
8418503 AAAATTATTAAAATACCCTTTAGGGGTATTTTCATAATTTGACCTTCTCAAA
131 AAAATTATTAAAATACCCTTTAGGGGTATTTTCATAATTTGACCTTCTCAAA
8418555 A
1 A
8418556 TTCAATTTTC
Statistics
Matches: 182, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
182 182 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (182 bp):
AAAATCAATCAAATCGAGTTAAACTTTGTTCAATTTTTCAAAATTCGAAACCAAATGGGACTAAT
AAGGTTTGAAATTGGGATTTGTGATTTTAAAGCATTGAAAAACTTGAATGTACTTCAAGAAAAGT
AAAATTATTAAAATACCCTTTAGGGGTATTTTCATAATTTGACCTTCTCAAA
Found at i:8428941 original size:3 final size:3
Alignment explanation
Indices: 8428933--8428972 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
8428923 GCCTTTTCTT
8428933 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8428973 CCTAACCCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8432257 original size:28 final size:27
Alignment explanation
Indices: 8432217--8432278 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
8432207 GAGAAATGGG
* * *
8432217 AAAGAAAATAAAAGAAATGAAAAAGAA
1 AAAGAAAACAAAACAAAAGAAAAAGAA
*
8432244 AAAGAAGAACAAAACAAAAGGAAAAGAA
1 AAAGAA-AACAAAACAAAAGAAAAAGAA
*
8432272 GAAGAAA
1 AAAGAAA
8432279 TGAATGATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 7 0.24
28 22 0.76
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (27 bp):
AAAGAAAACAAAACAAAAGAAAAAGAA
Found at i:8433889 original size:26 final size:27
Alignment explanation
Indices: 8433850--8433900 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
8433840 TTGCATGAAA
8433850 CATTTGCACCAAGAAAAAA-GCATTCG
1 CATTTGCACCAAGAAAAAAGGCATTCG
**
8433876 CATTTGCATTAAGAAAAAAGGCATT
1 CATTTGCACCAAGAAAAAAGGCATT
8433901 TACATATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.24
Consensus pattern (27 bp):
CATTTGCACCAAGAAAAAAGGCATTCG
Found at i:8434339 original size:40 final size:40
Alignment explanation
Indices: 8434266--8434372 Score: 139
Period size: 40 Copynumber: 2.7 Consensus size: 40
8434256 TCTGGTATAT
*
8434266 TTTTAAATTTTTGGAAGA-TTTTAAGACCTCTAGG-CATA
1 TTTTAAATTTTTGAAAGATTTTTAAGACCTCTAGGTCATA
* * *
8434304 TTTTCAAATTTTTGAAAGATTTTTATGACCTCTAGGTTAAA
1 TTTT-AAATTTTTGAAAGATTTTTAAGACCTCTAGGTCATA
8434345 TTTTAAATTTTT-AAATGATTTTTAAGAC
1 TTTTAAATTTTTGAAA-GATTTTTAAGAC
8434373 TTTCAGGCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 4 0.07
39 16 0.27
40 34 0.57
41 6 0.10
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (40 bp):
TTTTAAATTTTTGAAAGATTTTTAAGACCTCTAGGTCATA
Found at i:8434391 original size:40 final size:39
Alignment explanation
Indices: 8434347--8434481 Score: 112
Period size: 40 Copynumber: 3.3 Consensus size: 39
8434337 AGGTTAAATT
*
8434347 TTAAATTTTTAAATGATTTTTAAGACTTTCAGGCAAAACC
1 TTAAATTTTTAAATGATTTTCAAGACTTTC-GGCAAAACC
** **
8434387 TTAAATTTTTGAAA--ATTTTGCAAGACTTTCGAAAGAAATT
1 TTAAATTTTT-AAATGATTTT-CAAGACTTTCGGCA-AAACC
* * * *
8434427 TTAAATTTTTGAATGATTTCCAAGGCCTTCGGGCAAAACC
1 TTAAATTTTTAAATGATTTTCAAGACTTTC-GGCAAAACC
8434467 TTATAAATTTTTAAA
1 -T-TAAATTTTTAAA
8434482 ACCTTTGAGC
Statistics
Matches: 73, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
39 9 0.12
40 43 0.59
41 10 0.14
42 11 0.15
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (39 bp):
TTAAATTTTTAAATGATTTTCAAGACTTTCGGCAAAACC
Found at i:8434564 original size:113 final size:111
Alignment explanation
Indices: 8434387--8434594 Score: 278
Period size: 113 Copynumber: 1.9 Consensus size: 111
8434377 AGGCAAAACC
*
8434387 TTAAATTTTTGAAAATTTTGCAAGACTTTCGAAAGAAATTTTAAATTTTTGAATGATTTCCAAGG
1 TTAAATTTTTGAAAATTTTGCAAGACTTTCGAAAGAAATTTTAAAATTTTGAATGATTTCCAAGG
**
8434452 CCTTCGGGCAAAACCTTATAAATTTTT-AAAACCTTTGAGCAAAGTTT
66 CCTTCAAGCAAAACC-T-TAAATTTTTGAAAACCTTTGAGCAAAGTTT
*** * *
8434499 TTAAATTTTTGAATAATTTT-CAAGACTTTCAGGTTG-ATTTTTCAAAATTTTGAATGATTTTCA
1 TTAAATTTTTGAA-AATTTTGCAAGACTTTC-GAAAGAAATTTT-AAAATTTTGAATGATTTCCA
8434562 AGGCCTTCAAGCAAAACCTTAAATTTTTGAAAA
63 AGGCCTTCAAGCAAAACCTTAAATTTTTGAAAA
8434595 ATTTTCAAGA
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
111 9 0.11
112 33 0.39
113 42 0.50
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (111 bp):
TTAAATTTTTGAAAATTTTGCAAGACTTTCGAAAGAAATTTTAAAATTTTGAATGATTTCCAAGG
CCTTCAAGCAAAACCTTAAATTTTTGAAAACCTTTGAGCAAAGTTT
Found at i:8434730 original size:113 final size:115
Alignment explanation
Indices: 8434546--8434839 Score: 283
Period size: 119 Copynumber: 2.5 Consensus size: 115
8434536 TTTTTCAAAA
* *
8434546 TTTTGAATGATTTTCAAGGCCTTCAAGCAAAACCTTAAATTTTTGAA-AAATTTTCAAGACTTCC
1 TTTTGAATGATTTTCAAGGCCTTC-GGCAAAACCTTAAATTTTTGAATAAATTCT-AAGACTTCC
*
8434610 AAACAAAACC-TAGGA-TTTT-TTACCCAAGACCTTCAGGCAAAACCTTAGAC
64 AAACAAAACCTTA-GACTTTTATTACCCAAAACCTTCAGGCAAAACCTTAGAC
* * * **
8434660 TTTTCAATGATTTCCAAGGCCTTCGGCAAAACCTTAAATTTTTGAATAACTTCTAAGA-TCTCTG
1 TTTTGAATGATTTTCAAGGCCTTCGGCAAAACCTTAAATTTTTGAATAAATTCTAAGACT-TCCA
** ** * *
8434724 GGCAAAACCTTAGACTTTTGAAAATTTTCCAAAACCTTTAGGCAAAACCTTAGAT
65 AACAAAACCTTAGACTTTT----ATTACCCAAAACCTTCAGGCAAAACCTTAGAC
* * ** * * *
8434779 TTTTGAATGATTTTCAAGGCCATTAGGCATAATTTTAAATTTTAGAATAATTTCCAAGACT
1 TTTTGAATGATTTTCAAGGCC-TTCGGCAAAACCTTAAATTTTTGAATAAATTCTAAGACT
8434840 ATGAGAAGAA
Statistics
Matches: 146, Mismatches: 23, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
112 1 0.01
113 36 0.25
114 33 0.23
119 45 0.31
120 30 0.21
121 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (115 bp):
TTTTGAATGATTTTCAAGGCCTTCGGCAAAACCTTAAATTTTTGAATAAATTCTAAGACTTCCAA
ACAAAACCTTAGACTTTTATTACCCAAAACCTTCAGGCAAAACCTTAGAC
Found at i:8434743 original size:40 final size:39
Alignment explanation
Indices: 8434633--8434838 Score: 173
Period size: 40 Copynumber: 5.2 Consensus size: 39
8434623 GATTTTTTAC
* *
8434633 CCAAGACCTTCAGGCAAAACCTTAGACTTTTCAATGATTT
1 CCAAGACCTT-AGGCAAAACCTTAGACTTTTGAATAATTT
* * * * *
8434673 CCAAGGCCTTCGGCAAAACCTTAAATTTTTGAATAACTT
1 CCAAGACCTTAGGCAAAACCTTAGACTTTTGAATAATTT
* * *
8434712 CTAAGATCTCTGGGCAAAACCTTAGACTTTTGAA-AATTTT
1 CCAAGACCT-TAGGCAAAACCTTAGACTTTTGAATAA-TTT
* * *
8434752 CCAAAACCTTTAGGCAAAACCTTAGATTTTTGAATGATTT
1 CCAAGACC-TTAGGCAAAACCTTAGACTTTTGAATAATTT
* * * ** *
8434792 TCAAGGCCATTAGGCATAATTTTA-AATTTTAGAATAATTT
1 CCAAGACC-TTAGGCAAAACCTTAGACTTTT-GAATAATTT
8434832 CCAAGAC
1 CCAAGAC
8434839 TATGAGAAGA
Statistics
Matches: 130, Mismatches: 31, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
39 36 0.28
40 92 0.71
41 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.33
Consensus pattern (39 bp):
CCAAGACCTTAGGCAAAACCTTAGACTTTTGAATAATTT
Found at i:8436692 original size:20 final size:20
Alignment explanation
Indices: 8436669--8436706 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8436659 TTCCTTTGCA
*
8436669 TTTCATTTTATTCCATTGAT
1 TTTCATATTATTCCATTGAT
*
8436689 TTTCATATTATTTCATTG
1 TTTCATATTATTCCATTG
8436707 TGTTTATCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.13, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTCATATTATTCCATTGAT
Found at i:8445835 original size:22 final size:22
Alignment explanation
Indices: 8445810--8445875 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
8445800 ATTTTTTGTC
8445810 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGGGATACAAATA
* * *
8445832 CTTAATTCTAGGGGTATAAAGA
1 CTTAATTCTAGGGATACAAATA
* *
8445854 CTTAATTCTAGAGATTCAAATA
1 CTTAATTCTAGGGATACAAATA
8445876 TAAATATACA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.33
Consensus pattern (22 bp):
CTTAATTCTAGGGATACAAATA
Found at i:8461393 original size:30 final size:30
Alignment explanation
Indices: 8461357--8461424 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
8461347 TTGGTATCAG
* *
8461357 AGCTTTGGTTTGTGCAAACCTAG-TGTACTT
1 AGCTTTGGTTCGTACAAA-CTAGATGTACTT
*
8461387 AGCTTTGGTTCGTACAAACTTGATGTACTT
1 AGCTTTGGTTCGTACAAACTAGATGTACTT
8461417 AGCTTTGG
1 AGCTTTGG
8461425 AACATGTGAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 3 0.09
30 31 0.91
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.40
Consensus pattern (30 bp):
AGCTTTGGTTCGTACAAACTAGATGTACTT
Found at i:8466304 original size:17 final size:18
Alignment explanation
Indices: 8466282--8466319 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8466272 GACTTGAAGT
8466282 CATGCAA-ACAATTCTTA
1 CATGCAAGACAATTCTTA
* *
8466299 CATGCAAGTCAGTTCTTA
1 CATGCAAGACAATTCTTA
8466317 CAT
1 CAT
8466320 TCATCATGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.32
Consensus pattern (18 bp):
CATGCAAGACAATTCTTA
Found at i:8467578 original size:29 final size:29
Alignment explanation
Indices: 8467546--8467621 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 29
8467536 CCAAATAAGC
8467546 CCTTATACTTTAATTTGCATCCAAACAAA
1 CCTTATACTTTAATTTGCATCCAAACAAA
* * * *
8467575 CCTTTATCCTTTAATTTGTATCTAAATAAA
1 CC-TTATACTTTAATTTGCATCCAAACAAA
*
8467605 TC-TATAACTTTAATTTG
1 CCTTAT-ACTTTAATTTG
8467622 TACTTAAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 3 0.08
29 12 0.31
30 24 0.62
ACGTcount: A:0.34, C:0.18, G:0.04, T:0.43
Consensus pattern (29 bp):
CCTTATACTTTAATTTGCATCCAAACAAA
Found at i:8467641 original size:29 final size:29
Alignment explanation
Indices: 8467583--8467637 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
8467573 AACCTTTATC
8467583 CTTTAATTTGTATCTAAATAAATCTATAA
1 CTTTAATTTGTATCTAAATAAATCTATAA
8467612 CTTTAATTTGTA-CTTAAATAAA-CTAT
1 CTTTAATTTGTATC-TAAATAAATCTAT
8467638 TAACATAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (29 bp):
CTTTAATTTGTATCTAAATAAATCTATAA
Found at i:8472068 original size:16 final size:16
Alignment explanation
Indices: 8472031--8472070 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
8472021 CTATCCTATG
*
8472031 ATTTATTTTATTTTTT
1 ATTTTTTTTATTTTTT
**
8472047 GGTTTTTTTATTTTTT
1 ATTTTTTTTATTTTTT
8472063 ATTTTTTT
1 ATTTTTTT
8472071 CTTCTTCTTC
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.05, T:0.82
Consensus pattern (16 bp):
ATTTTTTTTATTTTTT
Found at i:8472113 original size:21 final size:21
Alignment explanation
Indices: 8472089--8472152 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
8472079 TCTTCTTCTG
8472089 AATTCATACATTCTCTCTAAA
1 AATTCATACATTCTCTCTAAA
* *
8472110 AATTCATACA--CTTTCTACA
1 AATTCATACATTCTCTCTAAA
* * *
8472129 AATTCATTCTTTCTCTTTAAA
1 AATTCATACATTCTCTCTAAA
8472150 AAT
1 AAT
8472153 AAACCAATTC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
19 15 0.44
21 19 0.56
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (21 bp):
AATTCATACATTCTCTCTAAA
Found at i:8472131 original size:19 final size:20
Alignment explanation
Indices: 8472089--8472135 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
8472079 TCTTCTTCTG
8472089 AATTCATACATTCTCTCTAAA
1 AATTCATACA-TCTCTCTAAA
* *
8472110 AATTCATACA-CTTTCTACA
1 AATTCATACATCTCTCTAAA
8472129 AATTCAT
1 AATTCAT
8472136 TCTTTCTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 14 0.58
21 10 0.42
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTCATACATCTCTCTAAA
Found at i:8473001 original size:21 final size:20
Alignment explanation
Indices: 8472959--8472995 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
8472949 ATTGATTTGG
*
8472959 TTTTATAGAGAGAGAATAAA
1 TTTTATAGAGAGAAAATAAA
8472979 TTTT-TAGAGAGAAAATA
1 TTTTATAGAGAGAAAATA
8472996 TGAATTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.49, C:0.00, G:0.19, T:0.32
Consensus pattern (20 bp):
TTTTATAGAGAGAAAATAAA
Found at i:8475752 original size:8 final size:8
Alignment explanation
Indices: 8475735--8475831 Score: 80
Period size: 8 Copynumber: 12.8 Consensus size: 8
8475725 ACATAATATT
*
8475735 ATATTATA
1 ATATAATA
*
8475743 ATATATTA
1 ATATAATA
8475751 ATA-AATA
1 ATATAATA
8475758 ATATAATA
1 ATATAATA
8475766 ATA-AAT-
1 ATATAATA
*
8475772 AT-TATTA
1 ATATAATA
*
8475779 ATTTAATTA
1 ATATAA-TA
8475788 ATA-AATA
1 ATATAATA
*
8475795 TTATAATA
1 ATATAATA
*
8475803 ATATATTA
1 ATATAATA
*
8475811 ATATATTA
1 ATATAATA
8475819 ATA-AATA
1 ATATAATA
8475826 ATATAA
1 ATATAA
8475832 AGAATAATAA
Statistics
Matches: 72, Mismatches: 10, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
6 4 0.06
7 21 0.29
8 43 0.60
9 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATATAATA
Found at i:8475758 original size:15 final size:15
Alignment explanation
Indices: 8475740--8475830 Score: 81
Period size: 15 Copynumber: 6.5 Consensus size: 15
8475730 ATATTATATT
8475740 ATAATATATTAATAA
1 ATAATATATTAATAA
*
8475755 ATAATATAATAATAA
1 ATAATATATTAATAA
8475770 AT-AT-TATTAAT--
1 ATAATATATTAATAA
8475781 -T--TA-ATTAATAA
1 ATAATATATTAATAA
* *
8475792 ATATTATAATAATATA
1 ATAATATATTAATA-A
*
8475808 TTAATATATTAATAA
1 ATAATATATTAATAA
8475823 ATAATATA
1 ATAATATA
8475831 AAGAATAATA
Statistics
Matches: 61, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
9 7 0.11
10 1 0.02
12 1 0.02
13 6 0.10
14 4 0.07
15 30 0.49
16 12 0.20
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATAATATATTAATAA
Found at i:8475764 original size:12 final size:12
Alignment explanation
Indices: 8475749--8475844 Score: 55
Period size: 12 Copynumber: 8.4 Consensus size: 12
8475739 TATAATATAT
8475749 TAATAAATAATA
1 TAATAAATAATA
8475761 TAAT-AATAA-A
1 TAATAAATAATA
* * *
8475771 T-ATTATTAATT
1 TAATAAATAATA
*
8475782 TAATTAATAA-A
1 TAATAAATAATA
*
8475793 TATTATAATAATA
1 TAATA-AATAATA
*
8475806 T-ATTAAT-ATA
1 TAATAAATAATA
8475816 TTAATAAATAATA
1 -TAATAAATAATA
8475829 TAA-AGAATAATA
1 TAATA-AATAATA
8475841 -AATA
1 TAATA
8475845 TTTTTATTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 20
0.69 0.10 0.21
Matches are distributed among these distances:
9 2 0.03
10 9 0.14
11 16 0.25
12 33 0.51
13 5 0.08
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (12 bp):
TAATAAATAATA
Found at i:8475792 original size:22 final size:21
Alignment explanation
Indices: 8475756--8475828 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 21
8475746 TATTAATAAA
8475756 TAATATAATAATAAATATTAT
1 TAATATAATAATAAATATTAT
*
8475777 TAATTTAATTAATAAATATTA-
1 TAATATAA-TAATAAATATTAT
*
8475798 T-A-ATAATATATTAATA-TAT
1 TAATATAATA-ATAAATATTAT
8475817 TAATA-AATAATA
1 TAATATAATAATA
8475829 TAAAGAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
18 4 0.09
19 12 0.28
20 6 0.14
21 9 0.21
22 12 0.28
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TAATATAATAATAAATATTAT
Found at i:8475867 original size:68 final size:68
Alignment explanation
Indices: 8475727--8475859 Score: 162
Period size: 72 Copynumber: 1.9 Consensus size: 68
8475717 TTACTTATAC
* *
8475727 ATAATATTATATTATAATATATTAATAAATAATATAATAATAAATATTATTAATTTAATTAATAA
1 ATAATAATATATTATAATATATTAATAAATAATATAATAATAAATATTATTAATTTAAGTAAT--
8475792 ATATT
64 ATATT
* *
8475797 ATAATAATATA-T-TAATATATTAATAAATAATATAAAGAATAATAAATATTTTTATTTTAAGTA
1 ATAATAATATATTATAATATATTAATAAATAATAT----AATAATAAATATTATTAATTTAAGTA
8475860 TTTTTATATT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
68 21 0.38
69 1 0.02
70 10 0.18
72 23 0.42
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (68 bp):
ATAATAATATATTATAATATATTAATAAATAATATAATAATAAATATTATTAATTTAAGTAATAT
ATT
Found at i:8475928 original size:17 final size:17
Alignment explanation
Indices: 8475879--8475934 Score: 51
Period size: 19 Copynumber: 3.1 Consensus size: 17
8475869 TAACATAATA
8475879 TTTTAATATTTAA-TATT
1 TTTTAATA-TTAATTATT
*
8475896 ATTATTAAAATATAATTATT
1 -TT-TTAATAT-TAATTATT
*
8475916 TTTTAATATTAATAATT
1 TTTTAATATTAATTATT
8475933 TT
1 TT
8475935 AATAACAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 9 0.28
18 9 0.28
19 10 0.31
20 4 0.12
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTAATATTAATTATT
Found at i:8475947 original size:36 final size:37
Alignment explanation
Indices: 8475879--8475948 Score: 92
Period size: 36 Copynumber: 1.9 Consensus size: 37
8475869 TAACATAATA
*
8475879 TTTTAATATTTAATATTATTATTAAAATATAATTATT
1 TTTTAATATTTAATATTATTAATAAAATATAATTATT
8475916 TTTTAATA-TTAATAATT-TTAATAACAA-ATAATT
1 TTTTAATATTTAAT-ATTATTAATAA-AATATAATT
8475949 TCAATACATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
36 17 0.57
37 13 0.43
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (37 bp):
TTTTAATATTTAATATTATTAATAAAATATAATTATT
Found at i:8475959 original size:26 final size:25
Alignment explanation
Indices: 8475926--8475975 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
8475916 TTTTAATATT
8475926 AATAATTTTAATAACAAATAATTTC
1 AATAATTTTAATAACAAATAATTTC
*
8475951 AATACATTTTAATAATAAATAATTT
1 AATA-ATTTTAATAACAAATAATTT
8475976 TTAATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (25 bp):
AATAATTTTAATAACAAATAATTTC
Found at i:8478476 original size:20 final size:21
Alignment explanation
Indices: 8478448--8478488 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8478438 TTGAAAATGT
* *
8478448 ATTTTGTTAATTTTA-TTTTA
1 ATTTCGTTAATATTAGTTTTA
8478468 ATTTCGTTAATATTAGTTTTA
1 ATTTCGTTAATATTAGTTTTA
8478489 TAGAGCTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (21 bp):
ATTTCGTTAATATTAGTTTTA
Found at i:8479334 original size:20 final size:20
Alignment explanation
Indices: 8479295--8479335 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8479285 ATAATTCTCA
** *
8479295 AAAATTTATTTTTGAGAATT
1 AAAATTTATTTTCAAAAATT
8479315 AAAATTTATTTTCAAAAATT
1 AAAATTTATTTTCAAAAATT
8479335 A
1 A
8479336 TAGGGTATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAATTTATTTTCAAAAATT
Found at i:8482723 original size:11 final size:11
Alignment explanation
Indices: 8482709--8482749 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
8482699 GAATATTTGA
8482709 TAAATATAAAC
1 TAAATATAAAC
8482720 TAAATATAAAC
1 TAAATATAAAC
* *
8482731 -AAA-ATGAAG
1 TAAATATAAAC
8482740 TAAATATAAA
1 TAAATATAAA
8482750 ATTAATACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 4 0.16
10 6 0.24
11 15 0.60
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (11 bp):
TAAATATAAAC
Found at i:8485024 original size:22 final size:23
Alignment explanation
Indices: 8484985--8485029 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
8484975 ACAGGATTGA
*
8484985 TCTTCTTTGCACAGGGGATCGAT
1 TCTTCTTTGCACAAGGGATCGAT
*
8485008 TCTTC-TTGTACAAGGGATCGAT
1 TCTTCTTTGCACAAGGGATCGAT
8485030 CCTCTTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (23 bp):
TCTTCTTTGCACAAGGGATCGAT
Found at i:8487856 original size:12 final size:12
Alignment explanation
Indices: 8487839--8487863 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8487829 ACTATTTAGG
8487839 CGTCATTTGGAT
1 CGTCATTTGGAT
8487851 CGTCATTTGGAT
1 CGTCATTTGGAT
8487863 C
1 C
8487864 TTCGATCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (12 bp):
CGTCATTTGGAT
Found at i:8488685 original size:3 final size:3
Alignment explanation
Indices: 8488667--8488701 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
8488657 ATTATTAAGC
* *
8488667 TAA TTA TAA AAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8488702 TAAGTATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8492475 original size:7 final size:7
Alignment explanation
Indices: 8492465--8492490 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8492455 TTTTTCTTTT
8492465 TTATTTA
1 TTATTTA
8492472 TTATTTA
1 TTATTTA
8492479 TTATTTA
1 TTATTTA
8492486 TTATT
1 TTATT
8492491 GGGTTCTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTATTTA
Found at i:8493518 original size:5 final size:5
Alignment explanation
Indices: 8493504--8493541 Score: 69
Period size: 5 Copynumber: 7.8 Consensus size: 5
8493494 ATCTGCTTTA
8493504 TCCA- TCCAC TCCAC TCCAC TCCAC TCCAC TCCAC TCCA
1 TCCAC TCCAC TCCAC TCCAC TCCAC TCCAC TCCAC TCCA
8493542 GCCCTGTACT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21
Consensus pattern (5 bp):
TCCAC
Found at i:8494760 original size:34 final size:34
Alignment explanation
Indices: 8494683--8494761 Score: 81
Period size: 34 Copynumber: 2.3 Consensus size: 34
8494673 AAGTTTCCAA
**
8494683 AAATGGATTTCCAAATAATCATAAACCTTTTGGG
1 AAATGGATTTCCAAATAATCATAAACCTTTCCGG
* * *
8494717 CAATAGATTTCCGAAA-AGTCATATAA-CTTTCCGG
1 AAATGGATTTCC-AAATAATCATA-AACCTTTCCGG
8494751 AAATGGATTTC
1 AAATGGATTTC
8494762 TGGAAGATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
34 31 0.86
35 5 0.14
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (34 bp):
AAATGGATTTCCAAATAATCATAAACCTTTCCGG
Found at i:8498266 original size:3 final size:3
Alignment explanation
Indices: 8498258--8498303 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
8498248 TTATTTTCTT
8498258 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TT- TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8498303 T
1 T
8498304 ATCATAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (3 bp):
TTA
Found at i:8504468 original size:3 final size:3
Alignment explanation
Indices: 8504462--8504503 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8504452 AAAAAACTTG
8504462 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8504504 GCAATTGATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:8506539 original size:10 final size:12
Alignment explanation
Indices: 8506510--8506542 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
8506500 TTAGTTTTTA
8506510 AAACAATATAAT
1 AAACAATATAAT
8506522 AAACAATA-AAT
1 AAACAATATAAT
8506533 AAA-AATATAA
1 AAACAATATAA
8506543 GACATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 4 0.20
11 8 0.40
12 8 0.40
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (12 bp):
AAACAATATAAT
Found at i:8519819 original size:2 final size:2
Alignment explanation
Indices: 8519812--8519837 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8519802 AAATACGAGC
8519812 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
8519838 CAACGTGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8526062 original size:18 final size:18
Alignment explanation
Indices: 8526039--8526074 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
8526029 TGTCAAAGCG
8526039 ACAAAACAATCAACTATT
1 ACAAAACAATCAACTATT
8526057 ACAAAACAATCAACTATT
1 ACAAAACAATCAACTATT
8526075 TATGTTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (18 bp):
ACAAAACAATCAACTATT
Found at i:8541966 original size:11 final size:11
Alignment explanation
Indices: 8541950--8541979 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8541940 TTATTGCTTT
*
8541950 AATAAAAATTA
1 AATAAAAATAA
8541961 AATAAAAATAA
1 AATAAAAATAA
8541972 AATAAAAA
1 AATAAAAA
8541980 AGGAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:8545218 original size:25 final size:27
Alignment explanation
Indices: 8545167--8545225 Score: 77
Period size: 25 Copynumber: 2.2 Consensus size: 27
8545157 GGTAAATCAT
*
8545167 GAAAGTTGACTATTATTGGCTTATGCTA
1 GAAAG-TGACTATTATTGGATTATGCTA
*
8545195 GAAAGTGACTA-TATT-GATTATGCTT
1 GAAAGTGACTATTATTGGATTATGCTA
8545220 GAAAGT
1 GAAAGT
8545226 CACAAGTGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 14 0.48
26 4 0.14
27 6 0.21
28 5 0.17
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.37
Consensus pattern (27 bp):
GAAAGTGACTATTATTGGATTATGCTA
Found at i:8556802 original size:6 final size:6
Alignment explanation
Indices: 8556753--8556804 Score: 63
Period size: 6 Copynumber: 8.8 Consensus size: 6
8556743 GTTATAACAC
* *
8556753 AAAAAT AAAAA- AAAAAGT AAGAA- AAAAAT AAAAAT AAAAAT AAAAGT
1 AAAAAT AAAAAT AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
8556800 AAAAA
1 AAAAA
8556805 GAAGCCTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 9 0.23
6 26 0.67
7 4 0.10
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.12
Consensus pattern (6 bp):
AAAAAT
Found at i:8558281 original size:26 final size:26
Alignment explanation
Indices: 8558231--8558295 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
8558221 TGCATCACTT
* *
8558231 GCATTTGTATCATAAGAAACCCATTC
1 GCATTTGCATCATAAGAAACACATTC
* * *
8558257 GCATTTGCATCATAAGAGAGACATTT
1 GCATTTGCATCATAAGAAACACATTC
*
8558283 ACATTTGCATCAT
1 GCATTTGCATCAT
8558296 TGTATCTACA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (26 bp):
GCATTTGCATCATAAGAAACACATTC
Found at i:8558605 original size:23 final size:23
Alignment explanation
Indices: 8558556--8558610 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
8558546 GGTTGAGATT
*
8558556 TTAAACCTAGTTTAGCTGGAACT
1 TTAAACCTAGTTTAGCTGGAACA
* *
8558579 TTAAACCTAGTTTAGTTGGCACA
1 TTAAACCTAGTTTAGCTGGAACA
*
8558602 TTAAGCCTA
1 TTAAACCTA
8558611 ATCTAGCTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (23 bp):
TTAAACCTAGTTTAGCTGGAACA
Found at i:8558623 original size:23 final size:22
Alignment explanation
Indices: 8558597--8558654 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
8558587 AGTTTAGTTG
*
8558597 GCACATTAAGCCTAATCTAGCTA
1 GCACATTAAGCCAAAT-TAGCTA
*
8558620 GCACTTTAAGGCCAAATTAGCTA
1 GCACATTAA-GCCAAATTAGCTA
*
8558643 GCACACTAAGCC
1 GCACATTAAGCC
8558655 CAGTCAAGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 3 0.10
23 21 0.70
24 6 0.20
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (22 bp):
GCACATTAAGCCAAATTAGCTA
Found at i:8558762 original size:22 final size:22
Alignment explanation
Indices: 8558707--8558773 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
8558697 GGCACCTAAG
* *
8558707 ATAATCTCTAAGACCCCCAGGC
1 ATAATCTCTAAGACCTCTAGGC
*
8558729 ATAATATCTAAGACCTCTAGGC
1 ATAATCTCTAAGACCTCTAGGC
* *
8558751 ATAATCTATAAGATCTCTAGGC
1 ATAATCTCTAAGACCTCTAGGC
8558773 A
1 A
8558774 AAACATTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.25
Consensus pattern (22 bp):
ATAATCTCTAAGACCTCTAGGC
Found at i:8558924 original size:104 final size:103
Alignment explanation
Indices: 8558749--8558969 Score: 246
Period size: 104 Copynumber: 2.1 Consensus size: 103
8558739 AGACCTCTAG
* * * *
8558749 GCATAATCTATAAGATCTCTAGGCAAAACATTTTAAATTTTTAAAGTTTCAACACCTATTTTACA
1 GCATAATCTATAAGACCTCTAGGCAAAACATTTTAAATTTTCAAAGCTTCAACACCTATTATACA
* * **
8558814 AAGAGCATTTAAAGATTTTGAGATTTGTAAGACTTTCGA
66 AAGAGCATTCAAAGATTTCGAGATTCATAAGAC-TTCGA
* * * ** * *
8558853 GCATAATCTTTAGGACCTCTAGGTAAAATGTTTTAAATTTTCAAAGCTTCAACCCCT-TTGATAT
1 GCATAATCTATAAGACCTCTAGGCAAAACATTTTAAATTTTCAAAGCTTCAACACCTATT-ATAC
* *
8558917 GAGGAGCATTCAAAGATTTCGAGATTCATAAGACTTCGA
65 AAAGAGCATTCAAAGATTTCGAGATTCATAAGACTTCGA
* *
8558956 GCGTAATCTCTAAG
1 GCATAATCTATAAG
8558970 TCCTTTGGGC
Statistics
Matches: 96, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
103 18 0.19
104 78 0.81
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (103 bp):
GCATAATCTATAAGACCTCTAGGCAAAACATTTTAAATTTTCAAAGCTTCAACACCTATTATACA
AAGAGCATTCAAAGATTTCGAGATTCATAAGACTTCGA
Found at i:8559305 original size:29 final size:29
Alignment explanation
Indices: 8559273--8559331 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
8559263 AAAACTTTGA
8559273 ACCATTAA-TTCTAGACAAAATTGTTGTCT
1 ACCATTAATTTC-AGACAAAATTGTTGTCT
*
8559302 ACCATTAATTTCAGATAAAATTGTTGTCT
1 ACCATTAATTTCAGACAAAATTGTTGTCT
8559331 A
1 A
8559332 TGTTTTTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (29 bp):
ACCATTAATTTCAGACAAAATTGTTGTCT
Found at i:8564077 original size:24 final size:24
Alignment explanation
Indices: 8564049--8564098 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
8564039 GAGCGTGATA
8564049 TAGTGGTTAATGATTTGACTAAAC
1 TAGTGGTTAATGATTTGACTAAAC
*
8564073 TAGTGGTTAATGATTTGGCTAAAC
1 TAGTGGTTAATGATTTGACTAAAC
8564097 TA
1 TA
8564099 CACCAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.38
Consensus pattern (24 bp):
TAGTGGTTAATGATTTGACTAAAC
Found at i:8565271 original size:43 final size:43
Alignment explanation
Indices: 8565224--8565310 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
8565214 CCAAGTTTCT
8565224 AACTTGGATGATCCAAAAGAGATGCTAAAATTGAAAGTGGTTG
1 AACTTGGATGATCCAAAAGAGATGCTAAAATTGAAAGTGGTTG
8565267 AACTTGGATGATCCAAAAGAGATGCTAAAATTGAAAGTGGTTG
1 AACTTGGATGATCCAAAAGAGATGCTAAAATTGAAAGTGGTTG
8565310 A
1 A
8565311 GTCTTTGGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.25
Consensus pattern (43 bp):
AACTTGGATGATCCAAAAGAGATGCTAAAATTGAAAGTGGTTG
Found at i:8579289 original size:44 final size:44
Alignment explanation
Indices: 8579137--8579394 Score: 280
Period size: 44 Copynumber: 6.0 Consensus size: 44
8579127 CAAGGAGTTG
* * *
8579137 TTTATTTTTCAAAGTTGTTAAGCCTCTGATTAGATGAGCC---A
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCTTTA
* *
8579178 TTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCCATTA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCTTTA
* * * *
8579222 -AT-TTTTTCAAAGTTGTTGAGCCTCTTATTAGATGAGCCTTTA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCTTTA
* * *
8579264 TTTATTTTCCAAAGTCGTTGCGCCTCTGATTAGAGGAG-CTTTG
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCTTTA
* * * *
8579307 TTCATTTTTCCAAAGTCGTTGAGCCTCTGATTAGAGAAG-CATTG
1 TTTATTTTT-CAAAGTCGTTGAGCCTCTGATTAGAGGAGCCTTTA
8579351 TTTATGTTTGTCAAAGTCGTTGAGCCTCT-ACTTAGAGGAGCCTT
1 TTTAT-TTT-TCAAAGTCGTTGAGCCTCTGA-TTAGAGGAGCCTT
8579395 GATCAAATCT
Statistics
Matches: 182, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
41 36 0.20
42 35 0.19
43 13 0.07
44 66 0.36
45 29 0.16
46 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.40
Consensus pattern (44 bp):
TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCTTTA
Found at i:8579607 original size:7 final size:7
Alignment explanation
Indices: 8579578--8579643 Score: 66
Period size: 7 Copynumber: 9.6 Consensus size: 7
8579568 CCACTTTGTT
*
8579578 TTTTTTA
1 TTTTATA
8579585 TTATTAT-
1 TT-TTATA
*
8579592 TTTTGTA
1 TTTTATA
8579599 TTTTATA
1 TTTTATA
8579606 TTTTATA
1 TTTTATA
*
8579613 TTTT-TG
1 TTTTATA
8579619 TATTTAT-
1 T-TTTATA
8579626 TTTTATA
1 TTTTATA
8579633 TTTTATA
1 TTTTATA
8579640 TTTT
1 TTTT
8579644 TTTCCTTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
6 10 0.20
7 36 0.72
8 4 0.08
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (7 bp):
TTTTATA
Found at i:8579614 original size:22 final size:22
Alignment explanation
Indices: 8579572--8579636 Score: 82
Period size: 21 Copynumber: 3.1 Consensus size: 22
8579562 GTTGGTCCAC
* * *
8579572 TTTGTTTTTTTTATTAT-TATT
1 TTTGTATTTTATATTTTATATT
8579593 TTTGTATTTTATATTTTATATT
1 TTTGTATTTTATATTTTATATT
8579615 TTTGTA-TTTAT-TTTTATATT
1 TTTGTATTTTATATTTTATATT
8579635 TT
1 TT
8579637 ATATTTTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
20 11 0.28
21 19 0.47
22 10 0.25
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (22 bp):
TTTGTATTTTATATTTTATATT
Found at i:8579683 original size:15 final size:15
Alignment explanation
Indices: 8579671--8579705 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
8579661 ATCTTTTATG
8579671 TATTTATTATTTACT
1 TATTTATTATTTACT
8579686 TATTTATTA-TTAC-
1 TATTTATTATTTACT
8579699 TATTTAT
1 TATTTAT
8579706 ATATATATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 4 0.20
15 9 0.45
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TATTTATTATTTACT
Found at i:8579747 original size:10 final size:10
Alignment explanation
Indices: 8579713--8579753 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
8579703 TATATATATA
*
8579713 TCTTTATTTT
1 TCTTTCTTTT
8579723 T-TTTCTTTCT
1 TCTTTCTTT-T
8579733 TCTTTCTTTT
1 TCTTTCTTTT
8579743 TCTTTCTTTT
1 TCTTTCTTTT
8579753 T
1 T
8579754 TGTTAATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 6 0.21
10 15 0.54
11 7 0.25
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (10 bp):
TCTTTCTTTT
Found at i:8579792 original size:21 final size:20
Alignment explanation
Indices: 8579768--8579884 Score: 76
Period size: 21 Copynumber: 5.7 Consensus size: 20
8579758 AATATTTATA
8579768 TATATTTTTTATTTATCTATT
1 TATATTTTTTATTTATCTA-T
* *
8579789 TATATGTTATAATTTATCTAT
1 TATAT-TTTTTATTTATCTAT
* * * *
8579810 TATTATTTTTAATTTTTTTGT
1 TA-TATTTTTTATTTATCTAT
*
8579831 TA-ATTTTTTTGTTTATCTGAT
1 TATA-TTTTTTATTTATCT-AT
* * *
8579852 TATTTTTATTTAATTATCTAA
1 TATATTT-TTTATTTATCTAT
8579873 TAT-TTTTTTATT
1 TATATTTTTTATT
8579885 ATTTGATTTT
Statistics
Matches: 74, Mismatches: 16, Indels: 14
0.71 0.15 0.13
Matches are distributed among these distances:
19 6 0.08
20 13 0.18
21 31 0.42
22 24 0.32
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.68
Consensus pattern (20 bp):
TATATTTTTTATTTATCTAT
Found at i:8579839 original size:11 final size:12
Alignment explanation
Indices: 8579818--8579843 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8579808 ATTATTATTT
8579818 TTAATTTTTTTG
1 TTAATTTTTTTG
8579830 TTAATTTTTTTG
1 TTAATTTTTTTG
8579842 TT
1 TT
8579844 TATCTGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (12 bp):
TTAATTTTTTTG
Found at i:8579886 original size:26 final size:24
Alignment explanation
Indices: 8579857--8579904 Score: 60
Period size: 26 Copynumber: 1.9 Consensus size: 24
8579847 CTGATTATTT
8579857 TTATTTAATTATCTAATATTTTTTTA
1 TTATTTAATTATCT-AT-TTTTTTTA
* *
8579883 TTATTTGATTTTCTATTTTTTT
1 TTATTTAATTATCTATTTTTTT
8579905 ATTTCTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 2 0.10
26 12 0.60
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (24 bp):
TTATTTAATTATCTATTTTTTTTA
Found at i:8580726 original size:3 final size:3
Alignment explanation
Indices: 8580720--8580839 Score: 174
Period size: 3 Copynumber: 41.0 Consensus size: 3
8580710 TTTTTTTCGT
8580720 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
8580768 TTA TTA TTA -TA ATA ATA ATA TTA TTA TTA TTA TTA TTA TTA -TA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
8580814 ATA TTA TTA TTA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
8580840 GGTTTGCTTA
Statistics
Matches: 112, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
2 6 0.05
3 106 0.95
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:8580877 original size:15 final size:16
Alignment explanation
Indices: 8580857--8580886 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8580847 TTAATTTTTT
8580857 TATTTTT-TTTATTTC
1 TATTTTTATTTATTTC
8580872 TATTTTTATTTATTT
1 TATTTTTATTTATTT
8580887 TCCTTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (16 bp):
TATTTTTATTTATTTC
Found at i:8580883 original size:25 final size:25
Alignment explanation
Indices: 8580851--8580921 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
8580841 GTTTGCTTAA
8580851 TTTT-TTTATTTTTTTTATTTCTAT
1 TTTTATTTATTTTTTTTATTTCTAT
* *
8580875 TTTTATTTATTTTCCTTTATTTGTAT
1 TTTTATTTATTTT-TTTTATTTCTAT
* *
8580901 TTTCATTT-TATTATTTTATTT
1 TTTTATTTAT-TTTTTTTATTT
8580922 TCTTTAAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
24 4 0.10
25 16 0.41
26 19 0.49
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTTATTTATTTTTTTTATTTCTAT
Found at i:8580901 original size:26 final size:25
Alignment explanation
Indices: 8580851--8580921 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 25
8580841 GTTTGCTTAA
*
8580851 TTTT-TTTATTTTTTTTATTTCTAT
1 TTTTATTTATTTTCTTTATTTCTAT
*
8580875 TTTTATTTATTTTCCTTTATTTGTAT
1 TTTTATTTATTTT-CTTTATTTCTAT
* *
8580901 TTTCATTTTATTAT-TTTATTT
1 TTTTA-TTTATTTTCTTTATTT
8580922 TCTTTAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
24 4 0.10
25 15 0.38
26 14 0.35
27 7 0.17
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTTATTTATTTTCTTTATTTCTAT
Done.