Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 45 of 105
Found at i:8581076 original size:56 final size:57
Alignment explanation
Indices: 8580927--8581209 Score: 259
Period size: 58 Copynumber: 4.9 Consensus size: 57
8580917 TATTTTCTTT
* * * *
8580927 AAATAAAA-TTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTTGA
1 AAATAAAATTTC-AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * *
8580984 AATTAAAGTTTTCAAAAAATATTTTTT-GAGAAAAGTTGAAGGTATCAATTTTCCTTAA
1 AAATAAA-ATTTCAAAAAATATTTTTTAG-GAAAAGTTGAAAGTATCAATTTTCCTTAA
* * * *
8581042 AAATAAAATTTCAAAAAGT-TTTTTTAGGAAAAGTTAAAAATATCAATTTTCCTCAA
1 AAATAAAATTTCAAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * * ** * * **
8581098 AATTGAAATTTCAAAAAAAATATTTTGGGGAAAAGTTGAAAAG-ATAAAGTTTCCTCGA
1 AAATAAAATTTCAAAAAATAT-TTTTTAGGAAAAGTTG-AAAGTATCAATTTTCCTTAA
* * * * *
8581156 AATTGAAATTTCAAAAAAAATATTTTAGGGAAAAGTTGAAAGTAACAATTTTCC
1 AAATAAAATTTCAAAAAATATTTTTTA-GGAAAAGTTGAAAGTATCAATTTTCC
8581210 CCTGTACAAA
Statistics
Matches: 186, Mismatches: 31, Indels: 17
0.79 0.13 0.07
Matches are distributed among these distances:
56 46 0.25
57 26 0.14
58 108 0.58
59 6 0.03
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (57 bp):
AAATAAAATTTCAAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:8581090 original size:114 final size:115
Alignment explanation
Indices: 8580927--8581209 Score: 272
Period size: 114 Copynumber: 2.5 Consensus size: 115
8580917 TATTTTCTTT
* * * * **
8580927 AAATAAAATTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTTGAAATT-AAA
1 AAATAAAATTCAAAAAAATATTTTTGAGGAAAAGTTAAAAATATCAATTTTCCTCAAAATTGAAA
* *
8580991 GTTTTCAAAAAATAT-TTTTTGAGAAAAGTTGAAGGTATCAATTTTCCTTAA
66 --TTTCAAAAAAAATATTTTGGAGAAAAGTTGAAGGTATCAATTTTCCTTAA
* *
8581042 AAATAAAATTTC-AAAAAGT-TTTTTTAGGAAAAGTTAAAAATATCAATTTTCCTCAAAATTGAA
1 AAATAAAA-TTCAAAAAAATATTTTTGAGGAAAAGTTAAAAATATCAATTTTCCTCAAAATTGAA
* * * * **
8581105 ATTTCAAAAAAAATATTTTGGGGAAAAGTTGAAAAG-ATAAAGTTTCCTCGA
65 ATTTCAAAAAAAATATTTTGGAGAAAAGTTG-AAGGTATCAATTTTCCTTAA
* * * * * *
8581156 AATTGAAATTTCAAAAAAAATATTTTAG-GGAAAAGTTGAAAGTAACAATTTTCC
1 AAAT-AAAATTC-AAAAAAATATTTTTGAGGAAAAGTTAAAAATATCAATTTTCC
8581210 CCTGTACAAA
Statistics
Matches: 136, Mismatches: 24, Indels: 15
0.78 0.14 0.09
Matches are distributed among these distances:
113 12 0.09
114 65 0.48
115 23 0.17
116 32 0.24
117 4 0.03
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (115 bp):
AAATAAAATTCAAAAAAATATTTTTGAGGAAAAGTTAAAAATATCAATTTTCCTCAAAATTGAAA
TTTCAAAAAAAATATTTTGGAGAAAAGTTGAAGGTATCAATTTTCCTTAA
Found at i:8586068 original size:197 final size:197
Alignment explanation
Indices: 8585732--8586127 Score: 625
Period size: 197 Copynumber: 2.0 Consensus size: 197
8585722 TTTGACAAGG
* * * *
8585732 ATGAGGGATGTAAATGTGTTGATTCTAAATTTTATAGATCTATGATAGGTTCATTGTTCTATCTT
1 ATGAGGGAGGTAAATGTGTTGATTCTAAATTATATAAATCTATAATAGGTTCATTGTTCTATCTT
** **
8585797 ATTGCAAGTAGATTAGATATAATGTTTAGTGTGTGGTTGTGTGCTAAATTTCAATTATCACCTAG
66 ATTGCAAGTAGACCAGATATAATGTTTAGTGTGTACTTGTGTGCTAAATTTCAATTATCACCTAG
* *
8585862 AGAATCACATTTGCTTATTGTTAAACATA-TTTTAAGATACCTAAAATGTAGGGAATTATGCATC
131 AGAATCACATTTGCTTACTGTTAAACATATTTTTAA-ATACCTAAAATGTAGAGAATTATGCATC
8585926 ATT
195 ATT
* *
8585929 ATGAGGGAGGTAAATGTGTTGATTCTAAATTATATAAATCTATAATAGGTTGATTGTTTTATCTT
1 ATGAGGGAGGTAAATGTGTTGATTCTAAATTATATAAATCTATAATAGGTTCATTGTTCTATCTT
*
8585994 ATTGCAAGTTA-ACCAGATATAATGTTTAGTGTGTACTTGTGTGCTAGATTTCAATTATCACCTA
66 ATTGCAAG-TAGACCAGATATAATGTTTAGTGTGTACTTGTGTGCTAAATTTCAATTATCACCTA
* *
8586058 GAGTATCACATTTGCTTGCTGTTAAACATATTTTTAAATACCTAAAATGTAGAGAATTATGCATC
130 GAGAATCACATTTGCTTACTGTTAAACATATTTTTAAATACCTAAAATGTAGAGAATTATGCATC
8586123 ATT
195 ATT
8586126 AT
1 AT
8586128 CATAGTTAAA
Statistics
Matches: 182, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
197 174 0.96
198 8 0.04
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.40
Consensus pattern (197 bp):
ATGAGGGAGGTAAATGTGTTGATTCTAAATTATATAAATCTATAATAGGTTCATTGTTCTATCTT
ATTGCAAGTAGACCAGATATAATGTTTAGTGTGTACTTGTGTGCTAAATTTCAATTATCACCTAG
AGAATCACATTTGCTTACTGTTAAACATATTTTTAAATACCTAAAATGTAGAGAATTATGCATCA
TT
Found at i:8586202 original size:17 final size:19
Alignment explanation
Indices: 8586180--8586221 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8586170 AAGCCAAAAT
8586180 CAAACAACA-AGAT-TATA
1 CAAACAACATAGATATATA
*
8586197 CAAACAACATATATATATA
1 CAAACAACATAGATATATA
8586216 CAAACA
1 CAAACA
8586222 TGCATAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 3 0.14
19 10 0.45
ACGTcount: A:0.60, C:0.19, G:0.02, T:0.19
Consensus pattern (19 bp):
CAAACAACATAGATATATA
Found at i:8593224 original size:39 final size:40
Alignment explanation
Indices: 8593116--8593226 Score: 125
Period size: 39 Copynumber: 2.8 Consensus size: 40
8593106 AAAAGTTTGT
* * *
8593116 TAATTTTTAAAGTTATTTGCCTTCATTTTGAAGGAACCTT
1 TAATTTTTAAAGTTATGTGCCTTTATTTTGAAGGAACCTA
* * * * * *
8593156 TAATTTTCAAAGTTGTGTGTCTTTGTTTTGAATG-AGCTA
1 TAATTTTTAAAGTTATGTGCCTTTATTTTGAAGGAACCTA
*
8593195 TAATTTTTAAAGTAATGTGCCTTTATTTTGAA
1 TAATTTTTAAAGTTATGTGCCTTTATTTTGAA
8593227 AGAGTCTCAT
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
39 30 0.53
40 27 0.47
ACGTcount: A:0.27, C:0.09, G:0.15, T:0.49
Consensus pattern (40 bp):
TAATTTTTAAAGTTATGTGCCTTTATTTTGAAGGAACCTA
Found at i:8593247 original size:55 final size:55
Alignment explanation
Indices: 8593181--8593288 Score: 207
Period size: 55 Copynumber: 2.0 Consensus size: 55
8593171 TGTGTCTTTG
8593181 TTTTGAATGAGCTATAATTTTTAAAGTAATGTGCCTTTATTTTGAAAGAGTCTCA
1 TTTTGAATGAGCTATAATTTTTAAAGTAATGTGCCTTTATTTTGAAAGAGTCTCA
*
8593236 TTTTGAATGAGCTATAATTTTTAAAGTAGTGTGCCTTTATTTTGAAAGAGTCT
1 TTTTGAATGAGCTATAATTTTTAAAGTAATGTGCCTTTATTTTGAAAGAGTCT
8593289 TAAATTTTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (55 bp):
TTTTGAATGAGCTATAATTTTTAAAGTAATGTGCCTTTATTTTGAAAGAGTCTCA
Found at i:8593320 original size:94 final size:95
Alignment explanation
Indices: 8593138--8593324 Score: 236
Period size: 94 Copynumber: 2.0 Consensus size: 95
8593128 TTATTTGCCT
* * * * * *
8593138 TCATTTTGAAGGAACCTTTAATTTTCAAAGTTGTGTGTCTTTGTTTTGAATGAGCTATAATTTTT
1 TCATTTTGAAGGAACCTATAATTTTCAAAGTAGTGTGCCTTTATTTTGAAAGAGCTATAATTTTC
*
8593203 AAAGTAATGTGCCTTTATTTTGAAAGAGTC
66 AAAGTAATGTGCCTTCATTTTGAAAGAGTC
* * *
8593233 TCATTTTGAATG-AGCTATAATTTTTAAAGTAGTGTGCCTTTATTTTGAAAGAGTCT-TAAATTT
1 TCATTTTGAAGGAACCTATAATTTTCAAAGTAGTGTGCCTTTATTTTGAAAGAG-CTAT-AATTT
*
8593296 TCAAAGTTATGTGCCTTCA-TTTGAAAGAG
64 TCAAAGTAATGTGCCTTCATTTTGAAAGAG
8593325 CTTTAAATTT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
94 45 0.57
95 34 0.43
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.44
Consensus pattern (95 bp):
TCATTTTGAAGGAACCTATAATTTTCAAAGTAGTGTGCCTTTATTTTGAAAGAGCTATAATTTTC
AAAGTAATGTGCCTTCATTTTGAAAGAGTC
Found at i:8593351 original size:80 final size:80
Alignment explanation
Indices: 8593237--8593385 Score: 214
Period size: 80 Copynumber: 1.9 Consensus size: 80
8593227 AGAGTCTCAT
*
8593237 TTTGAATGAGCTATAATTTTTAAAGTAGTGTGCCTTTATTTTGAAA-GA-GTCTT-AAATTTTCA
1 TTTGAAAGAGCTATAATTTTTAAAGTAGTGTGCCTTTATTTTGAAAGGATG-CTTAAAATTTTCA
8593299 AAGTTATGTGCCTTCA
65 AAGTTATGTGCCTTCA
* * *
8593315 TTTGAAAGAGCTTTAAATTTTTGAAAGTTGTGTGCCTTTCTTTTGAAAGGATGCTTAAAATTTTC
1 TTTGAAAGAGCTAT-AATTTTT-AAAGTAGTGTGCCTTTATTTTGAAAGGATGCTTAAAATTTTC
8593380 AAAGTT
64 AAAGTT
8593386 GTCTACTTCA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
78 12 0.19
79 7 0.11
80 23 0.37
81 5 0.08
82 15 0.24
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (80 bp):
TTTGAAAGAGCTATAATTTTTAAAGTAGTGTGCCTTTATTTTGAAAGGATGCTTAAAATTTTCAA
AGTTATGTGCCTTCA
Found at i:8593400 original size:41 final size:40
Alignment explanation
Indices: 8593233--8593407 Score: 171
Period size: 40 Copynumber: 4.4 Consensus size: 40
8593223 TGAAAGAGTC
* * * *
8593233 TCATTTTGAATGAGC-TATAATTTTTAAAGTAGTGTGCCT
1 TCATTTTGAAAGAGCTTAAAATTTTCAAAGTTGTGTGCCT
* *
8593272 TTATTTTGAAAGAGTCTT-AAATTTTCAAAGTTATGTGCCT
1 TCATTTTGAAAGAG-CTTAAAATTTTCAAAGTTGTGTGCCT
* *
8593312 TCA-TTTGAAAGAGCTTTAAATTTTTGAAAGTTGTGTGCCTT
1 TCATTTTGAAAGAGC-TTAAAATTTTCAAAGTTGTGTGCC-T
* *
8593353 TC-TTTTGAAAGGATGCTTAAAATTTTCAAAGTTGTCT-ACT
1 TCATTTTGAAA-GA-GCTTAAAATTTTCAAAGTTGTGTGCCT
*
8593393 TCATTTTGAAGGAGC
1 TCATTTTGAAAGAGC
8593408 CTTATTTTTT
Statistics
Matches: 112, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
38 1 0.01
39 26 0.23
40 44 0.39
41 19 0.17
42 20 0.18
43 2 0.02
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (40 bp):
TCATTTTGAAAGAGCTTAAAATTTTCAAAGTTGTGTGCCT
Found at i:8593415 original size:80 final size:79
Alignment explanation
Indices: 8593233--8593417 Score: 207
Period size: 82 Copynumber: 2.3 Consensus size: 79
8593223 TGAAAGAGTC
*
8593233 TCATTTTGAATGAG-CTATAATTTTTAAAGTAGTGTGCCTTTATTTTGAAAGAGTCTTAAATTTT
1 TCATTTTGAAAGAGCCT-TAATTTTTAAAGTAGTGTGCCTTTATTTTGAAAGAGTCTTAAATTTT
* *
8593297 CAAAGTTATGTGCCT
65 CAAAGTTATCTGACT
* * *
8593312 TCA-TTTGAAAGAGCTTTAAATTTTTGAAAGTTGTGTGCCTTTCTTTTGAAAG-GATGCTTAAAA
1 TCATTTTGAAAGAGCCTT-AATTTTT-AAAGTAGTGTGCCTTTATTTTGAAAGAG-T-CTT-AAA
*
8593375 TTTTCAAAGTTGTCT-ACT
61 TTTTCAAAGTTATCTGACT
* *
8593393 TCATTTTGAAGGAGCCTTATTTTTT
1 TCATTTTGAAAGAGCCTTAATTTTT
8593418 TTAAAGTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 10 0.11
79 12 0.13
80 25 0.28
81 14 0.16
82 28 0.31
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.45
Consensus pattern (79 bp):
TCATTTTGAAAGAGCCTTAATTTTTAAAGTAGTGTGCCTTTATTTTGAAAGAGTCTTAAATTTTC
AAAGTTATCTGACT
Found at i:8600781 original size:17 final size:18
Alignment explanation
Indices: 8600741--8600783 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
8600731 TAAATTTGAC
8600741 AAAAAG-AAAAAATTTGT
1 AAAAAGAAAAAAATTTGT
* *
8600758 TAGAAGAAAAAAATTT-T
1 AAAAAGAAAAAAATTTGT
8600775 AAAAAGAAA
1 AAAAAGAAA
8600784 TCCAAATCCA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (18 bp):
AAAAAGAAAAAAATTTGT
Found at i:8606414 original size:19 final size:20
Alignment explanation
Indices: 8606377--8606415 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
8606367 ATTTTTTATG
**
8606377 GTTTTATTTTTTATTTATTT
1 GTTTTATTTTTTACATATTT
8606397 GTTTT-TTTTTTACATATTT
1 GTTTTATTTTTTACATATTT
8606416 TATATGTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.15, C:0.03, G:0.05, T:0.77
Consensus pattern (20 bp):
GTTTTATTTTTTACATATTT
Found at i:8609483 original size:88 final size:86
Alignment explanation
Indices: 8609330--8609496 Score: 235
Period size: 88 Copynumber: 1.9 Consensus size: 86
8609320 ATTTAATTTT
* * * * *
8609330 AAAAATGATAAAAAAATTTAATTTTTCGATCAAATTAATTAACTTAAGTTGATTCTATTATTTTT
1 AAAAATGATAAAAAAATTTAATATTTCGATCAAATTAATTAACTTAAATTAATTCGATTACTTTT
* *
8609395 TATTATTCAATATAAATGATA
66 TATTAATAAATATAAATGATA
* *
8609416 AAAAATTGATGAAAAAAATTTAATATTTTGATTAAATTAATTAACTTAAATTAATTCGATTACTT
1 AAAAA-TGAT-AAAAAAATTTAATATTTCGATCAAATTAATTAACTTAAATTAATTCGATTACTT
8609481 TTTATTAATAAATATA
64 TTTATTAATAAATATA
8609497 GACCAATCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
86 5 0.07
87 4 0.06
88 61 0.87
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (86 bp):
AAAAATGATAAAAAAATTTAATATTTCGATCAAATTAATTAACTTAAATTAATTCGATTACTTTT
TATTAATAAATATAAATGATA
Found at i:8610663 original size:21 final size:21
Alignment explanation
Indices: 8610639--8610678 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8610629 CAAAGTACAA
8610639 TTTAATATATTAATATGTATT
1 TTTAATATATTAATATGTATT
* * *
8610660 TTTATTTTATTATTATGTA
1 TTTAATATATTAATATGTA
8610679 AAACCATTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (21 bp):
TTTAATATATTAATATGTATT
Found at i:8614805 original size:49 final size:49
Alignment explanation
Indices: 8614748--8614853 Score: 151
Period size: 49 Copynumber: 2.2 Consensus size: 49
8614738 GAAATATCTT
* * * ** *
8614748 TATTGATTTGTTAATTGATCCCATTAATCAATTATTGAACTTTTTGAAA
1 TATTGATTTGATAATAGATCCAATTAATCAACGATTGAACTTTTTAAAA
8614797 TATTGATTTGATAATAGATCCAATTAATCAACGATTGAACTTTTTAAAA
1 TATTGATTTGATAATAGATCCAATTAATCAACGATTGAACTTTTTAAAA
8614846 TATT-ATTT
1 TATTGATTT
8614854 TAAAATATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 4 0.08
49 47 0.92
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (49 bp):
TATTGATTTGATAATAGATCCAATTAATCAACGATTGAACTTTTTAAAA
Found at i:8614868 original size:12 final size:12
Alignment explanation
Indices: 8614837--8614869 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
8614827 ACGATTGAAC
8614837 TTTTTAAAATAT
1 TTTTTAAAATAT
8614849 TATTTTAAAATAT
1 T-TTTTAAAATAT
8614862 TTTTTAAA
1 TTTTTAAA
8614870 TTTAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTTTTAAAATAT
Found at i:8616517 original size:79 final size:80
Alignment explanation
Indices: 8616376--8616528 Score: 227
Period size: 79 Copynumber: 1.9 Consensus size: 80
8616366 AACAACATCC
* * * *
8616376 AATGTCTATAAGTATTTCTGGTTGGTTGAAGGAGGTTTTCCTCACGAACAGGCAATGACTATGGA
1 AATGTATATAAGTAGTTCTGGTTGATTGAAGGAGGTTTTCCTCAAGAACAGGCAATGACTATGGA
8616441 ATGATTTGAACAGGT
66 ATGATTTGAACAGGT
* * *
8616456 AATGTATATAAGT-GTTCTGGTTGATTGAAGGAGGTTTTCCTCAAGAGCAGGTAATGGCTATGGA
1 AATGTATATAAGTAGTTCTGGTTGATTGAAGGAGGTTTTCCTCAAGAACAGGCAATGACTATGGA
*
8616520 ATGGTTTGA
66 ATGATTTGA
8616529 TACTAGTGAT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 53 0.82
80 12 0.18
ACGTcount: A:0.28, C:0.10, G:0.28, T:0.33
Consensus pattern (80 bp):
AATGTATATAAGTAGTTCTGGTTGATTGAAGGAGGTTTTCCTCAAGAACAGGCAATGACTATGGA
ATGATTTGAACAGGT
Found at i:8625044 original size:21 final size:21
Alignment explanation
Indices: 8625002--8625047 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8624992 AAATTTTGGG
* *
8625002 TTCTACTAACCCATATTGATT
1 TTCTACAAACCCATATTCATT
8625023 TTCTACAAACCCAT-TGTCATT
1 TTCTACAAACCCATAT-TCATT
8625044 TTCT
1 TTCT
8625048 TCACAATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.26, C:0.26, G:0.04, T:0.43
Consensus pattern (21 bp):
TTCTACAAACCCATATTCATT
Found at i:8627386 original size:27 final size:28
Alignment explanation
Indices: 8627338--8627392 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
8627328 ATAAAATATA
*
8627338 ATTTAATTATATATAAATATAAT-TTTT
1 ATTTAATTAAATATAAATATAATATTTT
*
8627365 ATTTAATTAAAGTATTAA-ATAATATTTT
1 ATTTAATTAAA-TATAAATATAATATTTT
8627393 TCTTAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (28 bp):
ATTTAATTAAATATAAATATAATATTTT
Found at i:8627672 original size:18 final size:19
Alignment explanation
Indices: 8627637--8627682 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
8627627 AAATTTATCT
**
8627637 AATAAATAAAATTTTAAAA
1 AATAAATAAAATGATAAAA
8627656 AATAAA-AAAATGATAAAA
1 AATAAATAAAATGATAAAA
*
8627674 TA-AAATAAA
1 AATAAATAAA
8627683 TGGAGTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 3 0.13
18 14 0.61
19 6 0.26
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (19 bp):
AATAAATAAAATGATAAAA
Found at i:8627723 original size:30 final size:31
Alignment explanation
Indices: 8627676--8627744 Score: 108
Period size: 30 Copynumber: 2.3 Consensus size: 31
8627666 TGATAAAATA
8627676 AAATAA-A-TGGAGTGACATGTGAATTTATT
1 AAATAAGAGTGGAGTGACATGTGAATTTATT
8627705 AAATAAGAGTGGA-TGACATGTGAATTTATT
1 AAATAAGAGTGGAGTGACATGTGAATTTATT
*
8627735 AAATTAGAGT
1 AAATAAGAGT
8627745 ATTAAATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
29 6 0.16
30 27 0.73
31 4 0.11
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (31 bp):
AAATAAGAGTGGAGTGACATGTGAATTTATT
Found at i:8628886 original size:33 final size:33
Alignment explanation
Indices: 8628811--8628892 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 33
8628801 TAAAAGACAT
* *
8628811 TTAAAAAATATATTTTATATTGTTTGGATGATA
1 TTAAAAAAAATATTTTATATTGTTTGAATGATA
* * *
8628844 TTAAAAAAAATATTTTATGTTGTTTGAATTATT
1 TTAAAAAAAATATTTTATATTGTTTGAATGATA
**
8628877 TTATGAAAAATATTTT
1 TTAAAAAAAATATTTT
8628893 TCACAATAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (33 bp):
TTAAAAAAAATATTTTATATTGTTTGAATGATA
Found at i:8632894 original size:16 final size:16
Alignment explanation
Indices: 8632873--8632903 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8632863 CAAATGTTTT
8632873 TTTATTATTTTTTTAA
1 TTTATTATTTTTTTAA
8632889 TTTATTATTTTTTTA
1 TTTATTATTTTTTTA
8632904 TTACATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTATTATTTTTTTAA
Found at i:8633205 original size:3 final size:3
Alignment explanation
Indices: 8633199--8633227 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8633189 TTTTTTATTT
8633199 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8633228 TTATTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8633232 original size:3 final size:3
Alignment explanation
Indices: 8633226--8633257 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
8633216 ATAATAATAA
8633226 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
8633258 AACAAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8639900 original size:18 final size:17
Alignment explanation
Indices: 8639879--8639914 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8639869 ACAATTATTT
8639879 TGATAATAACAAACATAA
1 TGATAAT-ACAAACATAA
*
8639897 TGATAATCCAAACATAA
1 TGATAATACAAACATAA
8639914 T
1 T
8639915 ATGAGGATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.25
Consensus pattern (17 bp):
TGATAATACAAACATAA
Found at i:8640391 original size:4 final size:4
Alignment explanation
Indices: 8640382--8640407 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
8640372 TAATGATAAC
8640382 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
8640408 AGAAACTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:8643186 original size:47 final size:47
Alignment explanation
Indices: 8643033--8643359 Score: 240
Period size: 47 Copynumber: 7.0 Consensus size: 47
8643023 GACTTGACCA
* ** * * ** *
8643033 TTTT-AAAATAAATTTAAAAACTAATTTTAGTAAAAGCTTTATAAC-
1 TTTTGAAAATAAATTTAAAAGCTCCTTTAAGTAAAGGCTCAACAACT
* * * *
8643078 TTTTGAAAGTAAATTTAAAAACTCATTTAAGCAGAA--CTCAACAAC-
1 TTTTGAAAATAAATTTAAAAGCTCCTTTAAGTA-AAGGCTCAACAACT
* * * *
8643123 TTTTGAAAATAAATTTAAAAGTTCTTTTAAGTAAAGGTTCTACAACT
1 TTTTGAAAATAAATTTAAAAGCTCCTTTAAGTAAAGGCTCAACAACT
* * *
8643170 TTTTGAAAATAAATTTAAAAACTCCTTTAAATAAAGGCTCAATAAC-
1 TTTTGAAAATAAATTTAAAAGCTCCTTTAAGTAAAGGCTCAACAACT
* ** * * *
8643216 TTTTGAAAATAAATTTAAATGCT-CTTTTGGCAAAGGCTCTATAACTT
1 TTTTGAAAATAAATTTAAAAGCTCCTTTAAGTAAAGGCTCAACAAC-T
* * *
8643263 TTTTGAAGATAAATTTGAAAGCTCCTTTAAGTAAAGGTTCAACAAC-
1 TTTTGAAAATAAATTTAAAAGCTCCTTTAAGTAAAGGCTCAACAACT
* ** * * *
8643309 -TTTAAAAATCTTATCTTGAAAAGCTCTTTTAAATAATGGCTCAACAACT
1 TTTTGAAAAT-AAAT-TT-AAAAGCTCCTTTAAGTAAAGGCTCAACAACT
8643358 TT
1 TT
8643360 AAAAATCTCA
Statistics
Matches: 223, Mismatches: 46, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
44 2 0.01
45 62 0.28
46 54 0.24
47 63 0.28
48 41 0.18
50 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (47 bp):
TTTTGAAAATAAATTTAAAAGCTCCTTTAAGTAAAGGCTCAACAACT
Found at i:8643242 original size:93 final size:93
Alignment explanation
Indices: 8643033--8643311 Score: 300
Period size: 93 Copynumber: 3.0 Consensus size: 93
8643023 GACTTGACCA
* * * * * * *
8643033 TTTT-AAAATAAATTTAAAAACTAATTTTAGTAAAAGCTTTATAAC--TTTTGAAAGTAAATTTA
1 TTTTGAAAATAAATTTAAAAGCT-CTTTTAGCAAAGGCTCTACAACTTTTTTGAAAATAAATTTA
* *
8643095 AAAACTCATTTAAGCAGAA--CTCAACAAC
65 AAAACTCCTTTAAGTA-AAGGCTCAACAAC
* * *
8643123 TTTTGAAAATAAATTTAAAAGTTCTTTTAAGTAAAGGTTCTACAAC-TTTTTGAAAATAAATTTA
1 TTTTGAAAATAAATTTAAAAGCTCTTTT-AGCAAAGGCTCTACAACTTTTTTGAAAATAAATTTA
* *
8643187 AAAACTCCTTTAAATAAAGGCTCAATAAC
65 AAAACTCCTTTAAGTAAAGGCTCAACAAC
* * * * *
8643216 TTTTGAAAATAAATTTAAATGCTCTTTTGGCAAAGGCTCTATAACTTTTTTGAAGATAAATTTGA
1 TTTTGAAAATAAATTTAAAAGCTCTTTTAGCAAAGGCTCTACAACTTTTTTGAAAATAAATTTAA
* *
8643281 AAGCTCCTTTAAGTAAAGGTTCAACAAC
66 AAACTCCTTTAAGTAAAGGCTCAACAAC
8643309 TTT
1 TTT
8643312 AAAAATCTTA
Statistics
Matches: 159, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
90 8 0.05
91 31 0.19
92 42 0.26
93 78 0.49
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37
Consensus pattern (93 bp):
TTTTGAAAATAAATTTAAAAGCTCTTTTAGCAAAGGCTCTACAACTTTTTTGAAAATAAATTTAA
AAACTCCTTTAAGTAAAGGCTCAACAAC
Found at i:8643332 original size:48 final size:48
Alignment explanation
Indices: 8643280--8643483 Score: 232
Period size: 48 Copynumber: 4.2 Consensus size: 48
8643270 GATAAATTTG
* *
8643280 AAAGCTCCTTTAAGTAAAGGTTCAACAACTTTAAAAATCTTATCTTGA
1 AAAGCTCCTTTAAGCAAAGGCTCAACAACTTTAAAAATCTTATCTTGA
* ** * * *
8643328 AAAGCTCTTTTAAATAATGGCTCAACAACTTTAAAAATCTCATCCTGA
1 AAAGCTCCTTTAAGCAAAGGCTCAACAACTTTAAAAATCTTATCTTGA
* *
8643376 AAAACTTCTTTAAGCAAAGGCTCAACAACTTTAAAAAT-TTCATCCTT-A
1 AAAGCTCCTTTAAGCAAAGGCTCAACAACTTTAAAAATCTT-AT-CTTGA
* * * * *
8643424 AAAGCTCTTTTAAGCAAAAGCTCAATAACTTTAAGAATCTTAACTTTGA
1 AAAGCTCCTTTAAGCAAAGGCTCAACAACTTTAAAAATCTTATC-TTGA
8643473 AAAGCTCCTTT
1 AAAGCTCCTTT
8643484 TGAACTAATG
Statistics
Matches: 129, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
47 2 0.02
48 112 0.87
49 15 0.12
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (48 bp):
AAAGCTCCTTTAAGCAAAGGCTCAACAACTTTAAAAATCTTATCTTGA
Found at i:8643879 original size:12 final size:13
Alignment explanation
Indices: 8643853--8643884 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8643843 AGACTTCTGG
8643853 TTTC-TTTATCTT
1 TTTCATTTATCTT
8643865 TTTCATTTATC-T
1 TTTCATTTATCTT
8643877 TTTCATTT
1 TTTCATTT
8643885 TTTTCTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.12, C:0.16, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTCATTTATCTT
Found at i:8650595 original size:12 final size:12
Alignment explanation
Indices: 8650571--8650615 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
8650561 AAAAACTTGA
*
8650571 TTGATATGGTGG
1 TTGATAAGGTGG
*
8650583 TTAATAAGGTGG
1 TTGATAAGGTGG
* *
8650595 TTGGTGAGGTGG
1 TTGATAAGGTGG
8650607 TTGATAAGG
1 TTGATAAGG
8650616 GCAGGGTCCT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.42, T:0.36
Consensus pattern (12 bp):
TTGATAAGGTGG
Found at i:8661653 original size:8 final size:8
Alignment explanation
Indices: 8661636--8661664 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
8661626 ATCAACACCA
8661636 TTTT-TTT
1 TTTTATTT
8661643 TTTTATTT
1 TTTTATTT
8661651 TTTTATTT
1 TTTTATTT
8661659 TTTTAT
1 TTTTAT
8661665 GAGAATTCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 4 0.19
8 17 0.81
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTATTT
Found at i:8662008 original size:29 final size:30
Alignment explanation
Indices: 8661954--8662011 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
8661944 CCTTTCTTAG
*
8661954 ATTATTGAAATAAAAAAGAAATTAAAAAAT
1 ATTATGGAAATAAAAAAGAAATTAAAAAAT
8661984 ATTATGGAAATAAAAAA-AAATTAAAAAA
1 ATTATGGAAATAAAAAAGAAATTAAAAAA
8662012 CACATGTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (30 bp):
ATTATGGAAATAAAAAAGAAATTAAAAAAT
Found at i:8663271 original size:17 final size:18
Alignment explanation
Indices: 8663232--8663276 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
8663222 TGCAAAGATG
* *
8663232 ATAATAATATAAAATATA
1 ATAAAAATATAAAAAATA
8663250 ATAAAAATA-AAAAAATA
1 ATAAAAATATAAAAAATA
*
8663267 CTAAAAATAT
1 ATAAAAATAT
8663277 TAAATTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
ATAAAAATATAAAAAATA
Found at i:8663717 original size:36 final size:36
Alignment explanation
Indices: 8663642--8663726 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
8663632 ATTTTATTAT
* * *
8663642 AATAAATAAAATTTATTATTATATTATGAATTAAGA
1 AATAAATAAATTTTATTATTATATAATGAACTAAGA
*
8663678 AATAAATAAATTTTATTATTATATAAT-ATACTAATA
1 AATAAATAAATTTTATTATTATATAATGA-ACTAAGA
**
8663714 AATATTTAAATTT
1 AATAAATAAATTT
8663727 CATTGTTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
35 1 0.02
36 41 0.98
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (36 bp):
AATAAATAAATTTTATTATTATATAATGAACTAAGA
Found at i:8671443 original size:83 final size:84
Alignment explanation
Indices: 8671308--8671465 Score: 255
Period size: 83 Copynumber: 1.9 Consensus size: 84
8671298 AATGAAACCC
* *
8671308 AAGATCCTAAGTGAAACCCTAGCACAAAATCTTAAAAATGAAACCCTAAAACCAAACCTTAGGTG
1 AAGATCCTAAGTGAAACCCTAGCACAAAATCCTAAAAATGAAACCCTAAAACCAAACCCTAGGTG
*
8671373 GAATCTTAAACCCTAGGTT
66 GAACCTTAAACCCTAGGTT
* **
8671392 AAGATCCTAGGTGAAACCCTA-CATGAAATCCTAAAAATGAAACCCTAAAACCAAACCCTAGGTG
1 AAGATCCTAAGTGAAACCCTAGCACAAAATCCTAAAAATGAAACCCTAAAACCAAACCCTAGGTG
8671456 GAACCTTAAA
66 GAACCTTAAA
8671466 TCTTAAGTGA
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 48 0.71
84 20 0.29
ACGTcount: A:0.44, C:0.23, G:0.13, T:0.20
Consensus pattern (84 bp):
AAGATCCTAAGTGAAACCCTAGCACAAAATCCTAAAAATGAAACCCTAAAACCAAACCCTAGGTG
GAACCTTAAACCCTAGGTT
Found at i:8671497 original size:13 final size:13
Alignment explanation
Indices: 8671481--8671505 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8671471 AGTGAAAATT
8671481 TGAAACCTTAAAA
1 TGAAACCTTAAAA
8671494 TGAAACCTTAAA
1 TGAAACCTTAAA
8671506 TCCTAAGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.08, T:0.24
Consensus pattern (13 bp):
TGAAACCTTAAAA
Found at i:8671506 original size:40 final size:41
Alignment explanation
Indices: 8671457--8671557 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
8671447 CCCTAGGTGG
* *
8671457 AACCTTAAATCTTAAGTGAAAATTT-GAAACCTTAAAATG-A
1 AACCTTAAATCCTAAGT-AAAATTTCAAAACCTTAAAATGAA
* * *
8671497 AACCTTAAATCCTAAGTTAAGTTTCAAAACTTTAAAATGAA
1 AACCTTAAATCCTAAGTAAAATTTCAAAACCTTAAAATGAA
* *
8671538 AACCCTAAATCCTAGGTAAA
1 AACCTTAAATCCTAAGTAAA
8671558 GTCCAAAACC
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 5 0.10
40 28 0.55
41 18 0.35
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.29
Consensus pattern (41 bp):
AACCTTAAATCCTAAGTAAAATTTCAAAACCTTAAAATGAA
Found at i:8671565 original size:40 final size:40
Alignment explanation
Indices: 8671483--8671568 Score: 111
Period size: 40 Copynumber: 2.1 Consensus size: 40
8671473 TGAAAATTTG
* * *
8671483 AAACCTTAAAATGAAACCTTAAATCCTAAGTTAAGTTTCA
1 AAACCTTAAAATGAAACCCTAAATCCTAAGTAAAGTTCCA
* *
8671523 AAACTTTAAAATGAAAACCCTAAATCCTAGGTAAAG-TCCA
1 AAACCTTAAAATG-AAACCCTAAATCCTAAGTAAAGTTCCA
8671563 AAACCT
1 AAACCT
8671569 AAATCCACTC
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 20 0.51
41 19 0.49
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.26
Consensus pattern (40 bp):
AAACCTTAAAATGAAACCCTAAATCCTAAGTAAAGTTCCA
Found at i:8675354 original size:3 final size:3
Alignment explanation
Indices: 8675346--8675395 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
8675336 GTCTTTGGCA
*
8675346 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8675394 AT
1 AT
8675396 GGTCATCATC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8681676 original size:6 final size:6
Alignment explanation
Indices: 8681637--8681674 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
8681627 GCTTCGTTTC
* *
8681637 TCCTCT TCCTCT TCCTCT TCCTCT TCTTCT TCTTCT TC
1 TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TCCTCT TC
8681675 TTTGCAATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (6 bp):
TCCTCT
Found at i:8690097 original size:20 final size:20
Alignment explanation
Indices: 8690074--8690113 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8690064 AGCTTAAAGC
*
8690074 AAAAAATTTTAAAAATTTTA
1 AAAAAAATTTAAAAATTTTA
*
8690094 AAAAAAATTTAAAACTTTTA
1 AAAAAAATTTAAAAATTTTA
8690114 CGCAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAAAATTTAAAAATTTTA
Found at i:8703847 original size:16 final size:16
Alignment explanation
Indices: 8703826--8703862 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8703816 CGATAAATGA
*
8703826 ATGATAATGATGATTT
1 ATGATAATAATGATTT
*
8703842 ATGATAATAATTATTT
1 ATGATAATAATGATTT
8703858 ATGAT
1 ATGAT
8703863 GATTTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (16 bp):
ATGATAATAATGATTT
Found at i:8706614 original size:17 final size:17
Alignment explanation
Indices: 8706594--8706632 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
8706584 ACCAGGTGTT
*
8706594 CACCTGAACTAAGCGTA
1 CACCAGAACTAAGCGTA
*
8706611 CACCAGAACTAAGTGTA
1 CACCAGAACTAAGCGTA
8706628 CACCA
1 CACCA
8706633 AAACCCACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (17 bp):
CACCAGAACTAAGCGTA
Found at i:8709871 original size:33 final size:33
Alignment explanation
Indices: 8709830--8709898 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
8709820 ACTCATTCAA
*
8709830 AGTTAGTTTCATTTGTAGGATAGAACCCGAGGT
1 AGTTAGTTTCATTTGTAAGATAGAACCCGAGGT
*
8709863 AGTTAGTTTCATTTGTAAGATAGAACTCGAGGT
1 AGTTAGTTTCATTTGTAAGATAGAACCCGAGGT
8709896 AGT
1 AGT
8709899 CTAACTACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (33 bp):
AGTTAGTTTCATTTGTAAGATAGAACCCGAGGT
Found at i:8711688 original size:16 final size:16
Alignment explanation
Indices: 8711669--8711703 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8711659 AAAAGTTATG
8711669 AAAAAAGTA-AAAAGAA
1 AAAAAAG-AGAAAAGAA
8711685 AAAAAAGAGAAAAGAA
1 AAAAAAGAGAAAAGAA
8711701 AAA
1 AAA
8711704 CAAAAGCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 1 0.06
16 17 0.94
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (16 bp):
AAAAAAGAGAAAAGAA
Found at i:8713861 original size:11 final size:11
Alignment explanation
Indices: 8713836--8713876 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
8713826 AACTGAAATG
8713836 TTTGTTTTCTGT
1 TTTGTTTTCT-T
8713848 TTTGTTTTCTT
1 TTTGTTTTCTT
* *
8713859 TTTGTTTGCTA
1 TTTGTTTTCTT
8713870 TTTGTTT
1 TTTGTTT
8713877 AAGTTTGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.02, C:0.07, G:0.15, T:0.76
Consensus pattern (11 bp):
TTTGTTTTCTT
Found at i:8719936 original size:14 final size:15
Alignment explanation
Indices: 8719917--8719949 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8719907 AAAAAAATGT
8719917 AAAGTGC-AGAAAGG
1 AAAGTGCAAGAAAGG
*
8719931 AAAGTGCAAGAAAGT
1 AAAGTGCAAGAAAGG
8719946 AAAG
1 AAAG
8719950 AAACAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.55, C:0.06, G:0.30, T:0.09
Consensus pattern (15 bp):
AAAGTGCAAGAAAGG
Found at i:8728709 original size:16 final size:15
Alignment explanation
Indices: 8728686--8728719 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8728676 TAGTTGGACT
* *
8728686 TTTTTTTTTTCTTTC
1 TTTTGTTTTTCATTC
8728701 TTTTGTTTTTCATTC
1 TTTTGTTTTTCATTC
8728716 TTTT
1 TTTT
8728720 CCAAGCTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.12, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTGTTTTTCATTC
Found at i:8737419 original size:20 final size:20
Alignment explanation
Indices: 8737396--8737435 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8737386 TATGCAAAAG
*
8737396 TTCATATAG-TTATAGGTTTA
1 TTCATAGAGATTATA-GTTTA
8737416 TTCATAGAGATTATAGTTTA
1 TTCATAGAGATTATAGTTTA
8737436 AAAATTGTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (20 bp):
TTCATAGAGATTATAGTTTA
Found at i:8740359 original size:22 final size:22
Alignment explanation
Indices: 8740331--8740400 Score: 131
Period size: 22 Copynumber: 3.2 Consensus size: 22
8740321 AAAAGTACAA
8740331 AGAAAATGCATCAACAGTGAAC
1 AGAAAATGCATCAACAGTGAAC
8740353 AGAAAATGCATCAACAGTGAAC
1 AGAAAATGCATCAACAGTGAAC
*
8740375 AGAAAATGCATCAAAAGTGAAC
1 AGAAAATGCATCAACAGTGAAC
8740397 AGAA
1 AGAA
8740401 CCTACACGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.53, C:0.16, G:0.19, T:0.13
Consensus pattern (22 bp):
AGAAAATGCATCAACAGTGAAC
Found at i:8742208 original size:6 final size:6
Alignment explanation
Indices: 8742170--8742299 Score: 75
Period size: 6 Copynumber: 20.2 Consensus size: 6
8742160 CTCATGAAAT
* * * *
8742170 CCTAAA CCATAAA CCCCAAA GCTAAA CCCTAAA CCTAAA CCTAAA TCGAAA
1 CCTAAA CC-TAAA -CCTAAA CCTAAA -CCTAAA CCTAAA CCTAAA CCTAAA
* *
8742221 TCCTAAC CCTAAT CCTAAA CCTTAAA CC-AAA CC-ACAA CCCTAAA CCCTAAAA
1 -CCTAAA CCTAAA CCTAAA CC-TAAA CCTAAA CCTA-AA -CCTAAA -CCT-AAA
* *
8742273 CCAAAA CCCTAAA CCTAGAC CCTAAA C
1 CCTAAA -CCTAAA CCTA-AA CCTAAA C
8742300 TAACCACAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
5 6 0.06
6 45 0.46
7 41 0.42
8 6 0.06
ACGTcount: A:0.46, C:0.37, G:0.02, T:0.15
Consensus pattern (6 bp):
CCTAAA
Found at i:8742298 original size:13 final size:13
Alignment explanation
Indices: 8742170--8742299 Score: 86
Period size: 13 Copynumber: 9.5 Consensus size: 13
8742160 CTCATGAAAT
8742170 CCTAAACCATAAAC
1 CCTAAACC-TAAAC
* *
8742184 CCCAAAGCTAAAC
1 CCTAAACCTAAAC
8742197 CCTAAACCTAAAC
1 CCTAAACCTAAAC
*
8742210 CTAAATCGAAATCCT-AAC
1 C-----CTAAA-CCTAAAC
*
8742228 CCTAATCCTAAAC
1 CCTAAACCTAAAC
*
8742241 CTTAAACC-AAAC
1 CCTAAACCTAAAC
*
8742253 CAC-AACCCTAAAC
1 C-CTAAACCTAAAC
*
8742266 CCTAAAACCAAAAC
1 CCT-AAACCTAAAC
*
8742280 CCTAAACCTAGAC
1 CCTAAACCTAAAC
8742293 CCTAAAC
1 CCTAAAC
8742300 TAACCACAAA
Statistics
Matches: 90, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
12 13 0.14
13 49 0.54
14 17 0.19
18 8 0.09
19 3 0.03
ACGTcount: A:0.46, C:0.37, G:0.02, T:0.15
Consensus pattern (13 bp):
CCTAAACCTAAAC
Found at i:8747101 original size:11 final size:11
Alignment explanation
Indices: 8747081--8747110 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
8747071 AACCAATCAT
8747081 CCTTCCTTCTC
1 CCTTCCTTCTC
*
8747092 CCTTCTTTCTC
1 CCTTCCTTCTC
8747103 CCTTCCTT
1 CCTTCCTT
8747111 TGGCAATGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCCTTCTC
Found at i:8750096 original size:14 final size:14
Alignment explanation
Indices: 8750079--8750124 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
8750069 GGTTCGAAAG
8750079 TTAGGGTTTCAAGT
1 TTAGGGTTTCAAGT
8750093 TTA-GGTTTGGC-A-T
1 TTAGGGTTT--CAAGT
8750106 TTAGGGTTTCAAGT
1 TTAGGGTTTCAAGT
8750120 TTAGG
1 TTAGG
8750125 TTGGTTTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
12 1 0.04
13 10 0.37
14 15 0.56
15 1 0.04
ACGTcount: A:0.20, C:0.07, G:0.30, T:0.43
Consensus pattern (14 bp):
TTAGGGTTTCAAGT
Found at i:8750098 original size:27 final size:27
Alignment explanation
Indices: 8750064--8750126 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
8750054 TAGGGTTTTG
8750064 GTTTAGGTTCGAAAGTTAGGGTTTCAA
1 GTTTAGGTTCGAAAGTTAGGGTTTCAA
* ** *
8750091 GTTTAGGTTTGGCATTTAGGGTTTCAA
1 GTTTAGGTTCGAAAGTTAGGGTTTCAA
8750118 GTTTAGGTT
1 GTTTAGGTT
8750127 GGTTTGAGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.21, C:0.06, G:0.30, T:0.43
Consensus pattern (27 bp):
GTTTAGGTTCGAAAGTTAGGGTTTCAA
Found at i:8750195 original size:6 final size:6
Alignment explanation
Indices: 8750127--8750175 Score: 80
Period size: 6 Copynumber: 7.8 Consensus size: 6
8750117 AGTTTAGGTT
8750127 GGTTTG AGGTTTG GGTTTGG GGTTTG GGTTTG GGTTTG GGTTTG GGTTT
1 GGTTTG -GGTTTG GGTTT-G GGTTTG GGTTTG GGTTTG GGTTTG GGTTT
8750176 TAGTCTTAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 29 0.71
7 12 0.29
ACGTcount: A:0.02, C:0.00, G:0.49, T:0.49
Consensus pattern (6 bp):
GGTTTG
Found at i:8751669 original size:21 final size:21
Alignment explanation
Indices: 8751639--8751682 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8751629 ATTACGAAAT
*
8751639 TACCCCTTAAGGGCCTTTTAG
1 TACCCCTTAAGGGCATTTTAG
*
8751660 TACCCTTTAAGGGCATTTTAG
1 TACCCCTTAAGGGCATTTTAG
8751681 TA
1 TA
8751683 ATTTTACACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (21 bp):
TACCCCTTAAGGGCATTTTAG
Found at i:8752474 original size:13 final size:14
Alignment explanation
Indices: 8752445--8752478 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
8752435 ATAGGGTTTT
*
8752445 GGTTTAGAGTTTGA
1 GGTTTAGAGTTTAA
8752459 GGTTTAGA-TTTAA
1 GGTTTAGAGTTTAA
8752472 GGTTTAG
1 GGTTTAG
8752479 GGTTCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (14 bp):
GGTTTAGAGTTTAA
Found at i:8752476 original size:20 final size:20
Alignment explanation
Indices: 8752453--8752544 Score: 50
Period size: 20 Copynumber: 4.7 Consensus size: 20
8752443 TTGGTTTAGA
8752453 GTTTGAGGTTTAGATTTAAG
1 GTTTGAGGTTTAGATTTAAG
* *
8752473 GTTT-AGGGTTCA-ATTTCAGG
1 GTTTGA-GGTTTAGATTT-AAG
* *
8752493 GTTTGGGGTTT-GGTTT-AG
1 GTTTGAGGTTTAGATTTAAG
* * *
8752511 GATTTGAGGTTTTGTTTTATG
1 G-TTTGAGGTTTAGATTTAAG
8752532 GTTT-AGGGTTTAG
1 GTTTGA-GGTTTAG
8752545 TCTTATGGCT
Statistics
Matches: 54, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
18 2 0.04
19 15 0.28
20 35 0.65
21 2 0.04
ACGTcount: A:0.16, C:0.02, G:0.34, T:0.48
Consensus pattern (20 bp):
GTTTGAGGTTTAGATTTAAG
Found at i:8752597 original size:31 final size:32
Alignment explanation
Indices: 8752531--8752600 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
8752521 TTTGTTTTAT
* *
8752531 GGTTTAGGGTTTAGTCTTATGGCTTTGGTTAG
1 GGTTTAGGGTTTAGTCTTAGGGCTTGGGTTAG
*
8752563 GGTTTAGGGTTTTA-T-TTAGGGCTTGGGTTTG
1 GGTTTAGGG-TTTAGTCTTAGGGCTTGGGTTAG
8752594 GGTTTAG
1 GGTTTAG
8752601 CATGAATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 20 0.59
32 10 0.29
33 4 0.12
ACGTcount: A:0.11, C:0.04, G:0.37, T:0.47
Consensus pattern (32 bp):
GGTTTAGGGTTTAGTCTTAGGGCTTGGGTTAG
Found at i:8755047 original size:56 final size:53
Alignment explanation
Indices: 8754976--8755436 Score: 294
Period size: 50 Copynumber: 8.8 Consensus size: 53
8754966 TCTTAACTTT
* * *
8754976 AAAAAGCTCTTTTTAAACAGAGGCTTTGAAACTTAAATAAAAAAAATCTCATCTTAG
1 AAAAAGCTC-CTTTAAACAAAGGCTTTAAAACTT---TAAAAAAAATCTCATCTTAG
* * * *
8755033 AAAAAGCTCCTTTAAATAAAGGCTTTCAAACTTTTCAAAAAAACCTCATCTTAG
1 AAAAAGCTCCTTTAAACAAAGGCTTTAAAAC-TTTAAAAAAAATCTCATCTTAG
* * * *
8755087 AAAAAGCTCCTATAAACAAAGGCTTTAAAACTTTTAAAAAATTCTTATCTTAG
1 AAAAAGCTCCTTTAAACAAAGGCTTTAAAACTTTAAAAAAAATCTCATCTTAG
* * ** * * * *
8755140 AAAATGTTTTTTTTAAAAAAAGGC-CTAGAAACTTT---AAAATTCTCATCTTGG
1 AAAAAG-CTCCTTTAAACAAAGGCTTTA-AAACTTTAAAAAAAATCTCATCTTAG
* * ** * * * *
8755191 TAAAGGCTTTTTTAAACAAAAGTTTTGAAA-TTT--AAAAAAT-TGCATCTTCG
1 AAAAAGCTCCTTTAAACAAAGGCTTTAAAACTTTAAAAAAAATCT-CATCTTAG
* * * *
8755241 AAAAAGTTCCTTTAAACAAAAGCTTTGAAACTTT-AAAAAAATGTCATCTT-G
1 AAAAAGCTCCTTTAAACAAAGGCTTTAAAACTTTAAAAAAAATCTCATCTTAG
* * * *
8755292 AAAAAAACTTCTTTAAACAAAGGCCTTT-AAACTTT---AAAAATTTCATCTTGG
1 -AAAAAGCTCCTTTAAACAAAGG-CTTTAAAACTTTAAAAAAAATCTCATCTTAG
* * *
8755343 AAAAAGGCTCATTTAAACAAAGGCTTTAAAAC--T-ATAAAAATCTTATCTT-G
1 AAAAA-GCTCCTTTAAACAAAGGCTTTAAAACTTTAAAAAAAATCTCATCTTAG
* * **
8755393 AAAAAGCT-CTTCCTAAATAAAGGCTTTGAAACTTTTGAAAAAAT
1 AAAAAGCTCCTT--TAAACAAAGGCTTTAAAACTTTAAAAAAAAT
8755437 TACTTGATAA
Statistics
Matches: 330, Mismatches: 53, Indels: 46
0.77 0.12 0.11
Matches are distributed among these distances:
48 2 0.01
49 8 0.02
50 97 0.29
51 54 0.16
52 39 0.12
53 36 0.11
54 65 0.20
56 18 0.05
57 11 0.03
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (53 bp):
AAAAAGCTCCTTTAAACAAAGGCTTTAAAACTTTAAAAAAAATCTCATCTTAG
Found at i:8756268 original size:39 final size:40
Alignment explanation
Indices: 8756221--8756391 Score: 193
Period size: 40 Copynumber: 4.3 Consensus size: 40
8756211 TTTGTCATGA
* *
8756221 GTCTTTGAAATCATTAAAAAATCTAAGATTTCACCCAAAG
1 GTCTTAGAAATCATTAAAAAATCTAAGATTTTACCCAAAG
* * *
8756261 GTCTT-GAAAATCATTCAAAAATCTAAGATTTT-TCCAAAA
1 GTCTTAG-AAATCATTAAAAAATCTAAGATTTTACCCAAAG
* * *
8756300 GTCTTAGAAGTCATTAAAAAATGTAAGATTTTACCTAAAG
1 GTCTTAGAAATCATTAAAAAATCTAAGATTTTACCCAAAG
* * * * *
8756340 GTCTTAGAAATTATTCAAAAATCAAAGATTTTGCCTAAAG
1 GTCTTAGAAATCATTAAAAAATCTAAGATTTTACCCAAAG
*
8756380 GTCTTACAAATC
1 GTCTTAGAAATC
8756392 TTATATTATT
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
39 33 0.30
40 77 0.70
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (40 bp):
GTCTTAGAAATCATTAAAAAATCTAAGATTTTACCCAAAG
Found at i:8756271 original size:79 final size:80
Alignment explanation
Indices: 8756188--8756370 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 80
8756178 AACAGTTTTC
* * * ** *
8756188 AAAATCATTTAAAATTTTAAAAATTTGT-CATGAGTCTTTGAAATCATTAAAAAATCTAAGATTT
1 AAAATCATTCAAAAATCT-AAAATTTGTCCAAAAGTCTTAGAAATCATTAAAAAATCTAAGATTT
8756252 CACCCAAAGGTCTT-G
65 CACCCAAAGGTCTTAG
* * * * *
8756267 AAAATCATTCAAAAATCTAAGATTTTTCCAAAAGTCTTAGAAGTCATTAAAAAATGTAAGATTTT
1 AAAATCATTCAAAAATCTAAAATTTGTCCAAAAGTCTTAGAAATCATTAAAAAATCTAAGATTTC
*
8756332 ACCTAAAGGTCTTAG
66 ACCCAAAGGTCTTAG
*
8756347 -AAATTATTCAAAAATC-AAAGATTT
1 AAAATCATTCAAAAATCTAAA-ATTT
8756371 TGCCTAAAGG
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
78 9 0.10
79 77 0.89
80 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (80 bp):
AAAATCATTCAAAAATCTAAAATTTGTCCAAAAGTCTTAGAAATCATTAAAAAATCTAAGATTTC
ACCCAAAGGTCTTAG
Found at i:8756371 original size:79 final size:80
Alignment explanation
Indices: 8756220--8756391 Score: 231
Period size: 79 Copynumber: 2.2 Consensus size: 80
8756210 ATTTGTCATG
* *
8756220 AGTCTTTGAAATCATTAAAAAATCTAAGATTTCACCCAAAGGTCTTGAAAATCATTCAAAAATCT
1 AGTCTTAGAAATCATTAAAAAATCTAAGATTTCACCCAAAGGTCTTGAAAATCATTCAAAAATCA
*
8756285 AAGATTTTTCC-AAA
66 AAGATTTTGCCTAAA
* * * * *
8756299 AGTCTTAGAAGTCATTAAAAAATGTAAGATTTTACCTAAAGGTCTT-AGAAATTATTCAAAAATC
1 AGTCTTAGAAATCATTAAAAAATCTAAGATTTCACCCAAAGGTCTTGA-AAATCATTCAAAAATC
8756363 AAAGATTTTGCCTAAA
65 AAAGATTTTGCCTAAA
* *
8756379 GGTCTTACAAATC
1 AGTCTTAGAAATC
8756392 TTATATTATT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
78 1 0.01
79 66 0.82
80 13 0.16
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (80 bp):
AGTCTTAGAAATCATTAAAAAATCTAAGATTTCACCCAAAGGTCTTGAAAATCATTCAAAAATCA
AAGATTTTGCCTAAA
Found at i:8756482 original size:21 final size:22
Alignment explanation
Indices: 8756451--8756491 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
8756441 TAGTTTAGAA
*
8756451 TTTCACTTTTTGTCTCAAAATG
1 TTTCACTTTTTATCTCAAAATG
*
8756473 TTTCA-TTTTTATTTCAAAA
1 TTTCACTTTTTATCTCAAAA
8756492 CATCTCATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.27, C:0.15, G:0.05, T:0.54
Consensus pattern (22 bp):
TTTCACTTTTTATCTCAAAATG
Found at i:8756845 original size:19 final size:20
Alignment explanation
Indices: 8756807--8756846 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8756797 ATGCAAATGC
*
8756807 AAATGTCTATCCAATGATGT
1 AAATGTCTATACAATGATGT
*
8756827 AAATGTCT-TACATTGATGT
1 AAATGTCTATACAATGATGT
8756846 A
1 A
8756847 CATGAAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (20 bp):
AAATGTCTATACAATGATGT
Found at i:8758056 original size:18 final size:17
Alignment explanation
Indices: 8757990--8758056 Score: 66
Period size: 18 Copynumber: 3.9 Consensus size: 17
8757980 CCACATCACC
*
8757990 TTTTTTTCTTCATCTTCT
1 TTTTTTTCTTC-TTTTCT
8758008 TTTTTTTCTTC--TTCT
1 TTTTTTTCTTCTTTTCT
* *
8758023 TATTTTTTATTTTTTTCT
1 T-TTTTTTCTTCTTTTCT
8758041 TTCTTTTTCTTCTTTT
1 TT-TTTTTCTTCTTTT
8758057 TGATTATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
15 5 0.12
16 8 0.20
17 1 0.02
18 27 0.66
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTTTCTTCTTTTCT
Found at i:8760346 original size:536 final size:538
Alignment explanation
Indices: 8759533--8760586 Score: 1465
Period size: 536 Copynumber: 2.0 Consensus size: 538
8759523 ATGCAAGCTA
* * * * * *
8759533 ATTCAACAAGTTTACAACATGATTCAACAAGGAACTTGCATCAAACAAAGACAATTCTAGCTCAT
1 ATTCAACAAATTTACAACATGATTCAACAAAGAAATTGCATCAAACAAAGAAAATTCCAACTCAT
* *
8759598 TGAACTATAATTCCAACTGACTAAAAAAACTAGAAAAATAGAGCACTTGCAAAGAAAATCATCCA
66 TGAACTACAATTCCAACTGAATAAAAAAACTAGAAAAATAGAGCACTTGCAAAGAAAATCATCCA
** * * *
8759663 AACAGTAGGTAAAAACATGAATTTAAATGCAATTAAATGAGAATTAACAAGTAAACACATGAATT
131 AACAGTAGGTAAAAACACAAATTTAAATGCAATCAAATGAGAATTAAAAAGTAAACAAATGAATT
* * ** * *
8759728 GAAGAGTGTAAAGTGCAGCAAATGCAAACCAAATGGGAAGAAGGAGAGAAGTCCCTTGATATGTT
196 GAAAAGTGTAAAGTGCAGCAAATACAAACCAAATGCCAAGAAGAAGAGAAGTCCCTTGATATGCT
*
8759793 GTCACTCATTCAAAGTTCAACTCTACCAACTAAGTTTAGCCAAAATTTTGAAGCTAGATCTAGAA
261 GTCACTCATTAAAAGTTCAACTCTACCAACTAAGTTTAGCCAAAATTTTGAAGCTAGATCTAGAA
* * * * *
8759858 TTGTATGGATGGAATTTGAATGAGATTTTTTCTAGATTTAAAGATCTATGAGTTACAAATCTAAT
326 TTGTATGGATAGAATTTGAATGACATTTCTTCTAGATTTAAAGATCTATGAGTGACAAATCTAAG
* * * *
8759923 GAAA-GAATTTGGCTCACAAA-AAGCTAGATTTGAGCAAGAATAGATCAAAACATTGCAAAGAGG
391 GAAATAAATTTGGCACA-AAACAAGCTAGATTTGAGCAAGAACAGATCAAAACATTACAAAGAGG
* * * *
8759986 TCAAAAAGTGAAAATGCTAAACATATTTGAAGAACACTT-AATTCAATTGAAATTGAACATGAAA
455 TAAAAAACTAAAAATGC-AAACAAATTTGAAGAACACTTGAATTCAATTGAAATTGAACATGAAA
8760050 TTGAAGACATCATAAAATGC
519 TTGAAGACATCATAAAATGC
* * * *
8760070 ATTCAACAAATTTATAATATGATTCAACAAAGAAATTGC-TTAAACAAAGAAAATTCCAACTTAT
1 ATTCAACAAATTTACAACATGATTCAACAAAGAAATTGCATCAAACAAAGAAAATTCCAACTCAT
* ** *
8760134 TGAACTACAATTCCCA-TCGAATGCAAAAA-TTGAAAAAATAGAGCACTTGCAAAGAAAATCATC
66 TGAACTACAATTCCAACT-GAATAAAAAAACTAG-AAAAATAGAGCACTTGCAAAGAAAATCATC
*
8760197 CAAACAGTAGGTAAAAACACAAATTTAAATGCTATCAAATGAGAATTAAAAAGTAAACAAATGAA
129 CAAACAGTAGGTAAAAACACAAATTTAAATGCAATCAAATGAGAATTAAAAAGTAAACAAATGAA
* * ** *
8760262 TTGAAAAGTGTAAAGTGCAAG-AATTATAAATGAATTGCCAAGAAGAAGAGAAGTCCCTTGATAT
194 TTGAAAAGTGTAAAGTGC-AGCAAATACAAACCAAATGCCAAGAAGAAGAGAAGTCCCTTGATAT
* * *
8760326 GCTGTCACTCATTAAAAGTTCAACTTTGCCAACTAAGTTTAGCCAAAATTTTGAAGCTAGATCTG
258 GCTGTCACTCATTAAAAGTTCAACTCTACCAACTAAGTTTAGCCAAAATTTTGAAGCTAGATCTA
* * *
8760391 GAATTGTGTGGATAGAATTTGAATTACATTTCTTCTAGATTTGAAGATCTATGAGTGACAAATCT
323 GAATTGTATGGATAGAATTTGAATGACATTTCTTCTAGATTTAAAGATCTATGAGTGACAAATCT
* * * * *
8760456 AGGGAAATAAATTTGGCACAAAACAAGCTAGATTTGAGTAAGAACATATCAAAATATTATAAAGA
388 AAGGAAATAAATTTGGCACAAAACAAGCTAGATTTGAGCAAGAACAGATCAAAACATTACAAAGA
* * *
8760521 GGTAAAAAACTAAAAATGCCAACAAATTTGAAGAACACTTGAATTTAATTGAAATTGAACTTGAA
453 GGTAAAAAACTAAAAATGCAAACAAATTTGAAGAACACTTGAATTCAATTGAAATTGAACATGAA
8760586 A
518 A
8760587 ACTTAAAAAT
Statistics
Matches: 450, Mismatches: 61, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
535 3 0.01
536 327 0.73
537 120 0.27
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (538 bp):
ATTCAACAAATTTACAACATGATTCAACAAAGAAATTGCATCAAACAAAGAAAATTCCAACTCAT
TGAACTACAATTCCAACTGAATAAAAAAACTAGAAAAATAGAGCACTTGCAAAGAAAATCATCCA
AACAGTAGGTAAAAACACAAATTTAAATGCAATCAAATGAGAATTAAAAAGTAAACAAATGAATT
GAAAAGTGTAAAGTGCAGCAAATACAAACCAAATGCCAAGAAGAAGAGAAGTCCCTTGATATGCT
GTCACTCATTAAAAGTTCAACTCTACCAACTAAGTTTAGCCAAAATTTTGAAGCTAGATCTAGAA
TTGTATGGATAGAATTTGAATGACATTTCTTCTAGATTTAAAGATCTATGAGTGACAAATCTAAG
GAAATAAATTTGGCACAAAACAAGCTAGATTTGAGCAAGAACAGATCAAAACATTACAAAGAGGT
AAAAAACTAAAAATGCAAACAAATTTGAAGAACACTTGAATTCAATTGAAATTGAACATGAAATT
GAAGACATCATAAAATGC
Found at i:8762290 original size:20 final size:18
Alignment explanation
Indices: 8762243--8762303 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 18
8762233 CAATTTATTG
8762243 TTTTTGTTTTTTTTTCTT
1 TTTTTGTTTTTTTTTCTT
*
8762261 TTTCATGTTTTTTTCTTCTT
1 TTT-TTGTTTTTTT-TTCTT
*
8762281 TTTTTGGTTTTGTTTTTGTT
1 TTTTT-GTTTT-TTTTTCTT
8762301 TTT
1 TTT
8762304 CCATTCTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.08
19 10 0.28
20 20 0.56
21 3 0.08
ACGTcount: A:0.02, C:0.07, G:0.10, T:0.82
Consensus pattern (18 bp):
TTTTTGTTTTTTTTTCTT
Found at i:8777061 original size:28 final size:28
Alignment explanation
Indices: 8777021--8777076 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
8777011 AAATTAATGC
*
8777021 TAGCACCTAAATCATAAAGCACTCTATT
1 TAGCACCTAAATCACAAAGCACTCTATT
*
8777049 TAGCACCTAAATCACAGAGCACTCTATT
1 TAGCACCTAAATCACAAAGCACTCTATT
8777077 GAAGAAGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.27, G:0.09, T:0.27
Consensus pattern (28 bp):
TAGCACCTAAATCACAAAGCACTCTATT
Found at i:8784996 original size:21 final size:19
Alignment explanation
Indices: 8784972--8785016 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 19
8784962 CCCGAAATTA
8784972 ATAAAATATTATGTTTTAAAT
1 ATAAAATATTAT-TTTT-AAT
8784993 ATAAAATATTATTTTTAAT
1 ATAAAATATTATTTTTAAT
8785012 ATAAA
1 ATAAA
8785017 TATAAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 8 0.33
20 4 0.17
21 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
ATAAAATATTATTTTTAAT
Found at i:8785019 original size:18 final size:19
Alignment explanation
Indices: 8784969--8785019 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
8784959 TAACCCGAAA
8784969 TTAATA-AAATATTATGTT
1 TTAATATAAATATTATGTT
8784987 TTAAATATAAAATATTAT-TT
1 TT-AATAT-AAATATTATGTT
8785007 TTAATATAAATAT
1 TTAATATAAATAT
8785020 AAAATTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 8 0.27
19 9 0.30
20 4 0.13
21 9 0.30
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (19 bp):
TTAATATAAATATTATGTT
Found at i:8785046 original size:26 final size:25
Alignment explanation
Indices: 8785010--8785059 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
8785000 ATTATTTTTA
8785010 ATATAAATATAAAATTAAATAAATAT
1 ATATAAATAT-AAATTAAATAAATAT
*
8785036 ATATAAATATAAATTAATTAAATA
1 ATATAAATATAAATTAAATAAATA
8785060 ATTAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (25 bp):
ATATAAATATAAATTAAATAAATAT
Found at i:8785068 original size:25 final size:26
Alignment explanation
Indices: 8785014--8785069 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
8785004 TTTTTAATAT
*
8785014 AAATATAAAATTAAATAAATATATAT
1 AAATATAAAATTAAATAAATATATAA
*
8785040 AAATAT-AAATTAATTAAATA-ATTAA
1 AAATATAAAATTAAATAAATATA-TAA
8785065 AAATA
1 AAATA
8785070 ATTTTTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 1 0.04
25 20 0.74
26 6 0.22
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (26 bp):
AAATATAAAATTAAATAAATATATAA
Found at i:8799586 original size:259 final size:260
Alignment explanation
Indices: 8799297--8799936 Score: 610
Period size: 259 Copynumber: 2.5 Consensus size: 260
8799287 AGTTATTGTG
* * * *
8799297 AAAACTTATTTTATTTACAACGATTTTTCAATGTTGTTGCTTAATTTGTTTTCCAATATTTTATA
1 AAAACTTATTTTATTTGCAACGATTTTTCAAAGTTGTTACTTAATTTGTTTTCCAATAGTTTATA
* * ** * * *
8799362 CGATAACAAAAAAGCTGTT-TCGCAACTTTTTATCATATTTATAAGGAT-AAAATATTATTGTTG
66 CAATAACAAAAAAGCTATTAT-G-AAAATTTTATCAT-TTTATAACGATAAAAAAAATATTGTTG
* ** * * ** *
8799425 CAA-AAACTTGTTTTAATTCCAATGATTTTTTAATGTCGTTGCTTAAGTT-TTTTTTTAATATTT
128 -AATAAACTTATTTTAATTCCAACAAATATCCAATGTCATTGCTTAAGTTATTTTTTTAATATTT
* * * ** * *
8799488 TATGCAACGATAAAAAAGTTATTAC-ATAAGTTTTTATCATATTTGTAACAATAAAAAATTATTG
192 TATACAACGACAAAAAAATTATTACGA-AAACTTTTATCATATTTATAACAATAAAAAATTATTA
8799552 TTACA
256 TTACA
* * * ** * * **
8799557 AAAACTTATTTTATTGGTAAC-AATTTTCAACA-TCATTACTTAAGTTATTTTTTAATAGTTTAT
1 AAAACTTATTTTATTTGCAACGATTTTTCAA-AGTTGTTACTTAATTTGTTTTCCAATAGTTTAT
* * * *
8799620 ATAATGACAAAAAAGTTATTATGAAAATTTTATCATTTTGTAACGATAAAAAAAATATTGTTGAA
65 ACAATAACAAAAAAGCTATTATGAAAATTTTATCATTTTATAACGATAAAAAAAATATTGTTGAA
* * *
8799685 TAAACTTATTTTATTTGCAACAAATATCCAATGTCATTGCTTAATTTATTTTTTTAATATTTTAT
130 TAAACTTATTTTAATTCCAACAAATATCCAATGTCATTGCTTAAGTTATTTTTTTAATATTTTAT
* * *
8799750 ACAATGACAAAAAAATTGTTACGAAAACTTTTATCATATTTATAACAATAAAAAATTATTATTGC
195 ACAACGACAAAAAAATTATTACGAAAACTTTTATCATATTTATAACAATAAAAAATTATTATTAC
*
8799815 G
260 A
* * ** *
8799816 AAAACCTATTTTATTTGCAACGTTTTTTCAAAGTTGTTACTTAATTTGTTTTTTAAATATTTTTA
1 AAAACTTATTTTATTTGCAACGATTTTTCAAAGTTGTTACTTAATTTG-TTTTCCAATA-GTTTA
* * ** ** * *
8799881 TACAATGATAAAAAAATTATTACAAAAATTTTTATCATATTTGTAATGATAAAAAA
64 TACAATAACAAAAAAGCTATTATGAAAA-TTTTATCAT-TTTATAACGATAAAAAA
8799937 TTTTATAATC
Statistics
Matches: 305, Mismatches: 63, Indels: 20
0.79 0.16 0.05
Matches are distributed among these distances:
257 11 0.04
258 59 0.19
259 136 0.45
260 38 0.12
261 9 0.03
262 27 0.09
263 9 0.03
264 16 0.05
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (260 bp):
AAAACTTATTTTATTTGCAACGATTTTTCAAAGTTGTTACTTAATTTGTTTTCCAATAGTTTATA
CAATAACAAAAAAGCTATTATGAAAATTTTATCATTTTATAACGATAAAAAAAATATTGTTGAAT
AAACTTATTTTAATTCCAACAAATATCCAATGTCATTGCTTAAGTTATTTTTTTAATATTTTATA
CAACGACAAAAAAATTATTACGAAAACTTTTATCATATTTATAACAATAAAAAATTATTATTACA
Found at i:8799835 original size:131 final size:130
Alignment explanation
Indices: 8799267--8799942 Score: 605
Period size: 130 Copynumber: 5.2 Consensus size: 130
8799257 ATTCCTTTTC
* ** *
8799267 TATTTGTAATGATAATAAAA--AGTTATTGTGAAAACTTATTTTATTTACAACGATTTTTCAATG
1 TATTTGTAACGATAA-AAAATTA-TTATTGCAAAAACTTATTTTATTTGCAACGATTTTTCAATG
* * ** * * * * * *
8799330 TTGTTGCTTAATTTGTTTTCCAATATTTTATACGATAACAAAAAAGCTGTTTCG-CAACTTTTTA
64 TCGTTGCTTAATTTTTTTTTTAATATTTTATACAATGACAAAAAAGTTATTACGAAAAC-TTTTA
8799394 TCA
128 TCA
* * * * * * * * *
8799397 TATTTATAAGGATAAAATATTATTGTTGCAAAAACTTGTTTTAATTCCAATGATTTTTTAATGTC
1 TATTTGTAACGATAAAAAATTATTATTGCAAAAACTTATTTTATTTGCAACGATTTTTCAATGTC
* * * * **
8799462 GTTGCTTAAGTTTTTTTTTAATATTTTATGCAACGATAAAAAAGTTATTAC-ATAAGTTTTTATC
66 GTTGCTTAATTTTTTTTTTAATATTTTATACAATGACAAAAAAGTTATTACGA-AAACTTTTATC
8799526 A
130 A
* * * * * * **
8799527 TATTTGTAACAATAAAAAATTATTGTTACAAAAACTTATTTTATTGGTAAC-AATTTTCAACATC
1 TATTTGTAACGATAAAAAATTATTATTGCAAAAACTTATTTTATTTGCAACGATTTTTCAATGTC
* * * * * * *
8799591 ATTACTTAAGTTATTTTTTAATAGTTTATATAATGACAAAAAAGTTATTATGAAAA-TTTTATCA
66 GTTGCTTAATTTTTTTTTTAATATTTTATACAATGACAAAAAAGTTATTACGAAAACTTTTATCA
* * * * * *
8799655 T-TTTGTAACGATAAAAAAAATATTGTTG-AATAAACTTATTTTATTTGCAACAAATATCCAATG
1 TATTTGTAACGAT-AAAAAATTATTATTGCAA-AAACTTATTTTATTTGCAACGATTTTTCAATG
* * *
8799718 TCATTGCTTAATTTATTTTTTTAATATTTTATACAATGACAAAAAAATTGTTACGAAAACTTTTA
64 TCGTTGCTTAATTT-TTTTTTTAATATTTTATACAATGACAAAAAAGTTATTACGAAAACTTTTA
8799783 TCA
128 TCA
* * * * * * *
8799786 TATTTATAACAATAAAAAATTATTATTGCGAAAACCTATTTTATTTGCAACGTTTTTTCAAAGTT
1 TATTTGTAACGATAAAAAATTATTATTGCAAAAACTTATTTTATTTGCAACGATTTTTCAATGTC
* * * * * *
8799851 GTTACTTAATTTGTTTTTTAAATATTTTTATACAATGATAAAAAAATTATTACAAAAATTTTTAT
66 GTTGCTTAATTT-TTTTTTTAATA-TTTTATACAATGACAAAAAAGTTATTACGAAAACTTTTAT
8799916 CA
129 CA
*
8799918 TATTTGTAATGATAAAAAATT-TTAT
1 TATTTGTAACGATAAAAAATTATTAT
8799943 AATCATAGCT
Statistics
Matches: 440, Mismatches: 93, Indels: 25
0.79 0.17 0.04
Matches are distributed among these distances:
127 12 0.03
128 40 0.09
129 75 0.17
130 173 0.39
131 74 0.17
132 66 0.15
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (130 bp):
TATTTGTAACGATAAAAAATTATTATTGCAAAAACTTATTTTATTTGCAACGATTTTTCAATGTC
GTTGCTTAATTTTTTTTTTAATATTTTATACAATGACAAAAAAGTTATTACGAAAACTTTTATCA
Found at i:8800110 original size:129 final size:131
Alignment explanation
Indices: 8799961--8800200 Score: 315
Period size: 131 Copynumber: 1.8 Consensus size: 131
8799951 CTTCATTGAA
* * ** * *
8799961 TTTTTTAATATTTTATACAATGATAAATTTTATTGTTATGAA-TTC-ATATTATTTTGTAACAAT
1 TTTTTTAATATTTCAAACAATGATAAATTTTATTGTTACAAATTTCTATAATA-TTGGTAACAAT
* * * * *
8800024 AAAAA-AAATTATTATGAAAACTTGTTTTATTTGCAACAATTTTTCAATGTCATTTCTTACTTTT
65 AAAAATAAATCATTACGAAAACTTATTATATTTGCAACAACTTTTCAATGTCATTTCTTACTTTT
8800088 AT
130 AT
* *
8800090 TTTTTTAATATTTCAAACAATGATAATTTTTATTGTTGCAAATTTCTATAATATTGGTAACAATA
1 TTTTTTAATATTTCAAACAATGATAAATTTTATTGTTACAAATTTCTATAATATTGGTAACAATA
**
8800155 AAAATAAATCATTACGAAATTTTATTATATTTGCAACAACTTTTCA
66 AAAATAAATCATTACGAAAACTTATTATATTTGCAACAACTTTTCA
8800201 TTGTTGTTGT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
129 36 0.39
130 18 0.19
131 39 0.42
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (131 bp):
TTTTTTAATATTTCAAACAATGATAAATTTTATTGTTACAAATTTCTATAATATTGGTAACAATA
AAAATAAATCATTACGAAAACTTATTATATTTGCAACAACTTTTCAATGTCATTTCTTACTTTTA
T
Found at i:8805236 original size:4 final size:4
Alignment explanation
Indices: 8805227--8805251 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8805217 ATTCAAAGAT
8805227 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
8805252 CATAGATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:8805636 original size:39 final size:39
Alignment explanation
Indices: 8805588--8805763 Score: 113
Period size: 39 Copynumber: 4.6 Consensus size: 39
8805578 ACTGTTTAAC
*
8805588 AATAAAGGCATACAACTTTAAGAAAAATAGAGGCTCT-AT
1 AATAGAGGCATACAACTTTAA-AAAAATAGAGGCTCTAAT
*
8805627 AATAGAGGC--ACAACTTT--TAAAATA-AGGCTCTTAAAT
1 AATAGAGGCATACAACTTTAAAAAAATAGAGGCTC-T-AAT
* * **
8805663 AATAGAGGCATGCAACTTTAAAAATA-AG-GGCTCCTCCGT
1 AATAGAGGCATACAACTTTAAAAAAATAGAGGCT-CT-AAT
* *
8805702 AATAGAGGCATACAA-TTT-TAAAAATA-AGGACTCTTCCAT
1 AATAGAGGCATACAACTTTAAAAAAATAGAGG-CTC-T-AAT
*
8805741 AATAAAGGCATAACAACTTTAAA
1 AATAGAGGCAT-ACAACTTTAAA
8805764 GATAAAAGCT
Statistics
Matches: 107, Mismatches: 14, Indels: 29
0.71 0.09 0.19
Matches are distributed among these distances:
33 6 0.06
34 7 0.07
36 11 0.10
37 12 0.11
38 14 0.13
39 45 0.42
40 8 0.07
41 3 0.03
42 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (39 bp):
AATAGAGGCATACAACTTTAAAAAAATAGAGGCTCTAAT
Found at i:8805679 original size:75 final size:74
Alignment explanation
Indices: 8805547--8805763 Score: 197
Period size: 75 Copynumber: 2.8 Consensus size: 74
8805537 GTTCCTCAAA
* * * *
8805547 AATAGAGGCTCACAACTTTTTAAAAGTAAAGACTGTTTAACAATAAAGGCATACAACTTTAAGAA
1 AATAGAGG--CACAAC-TTTTAAAA-T-AAGGCTCTTAAATAATAAAGGCATACAACTTTAA-AA
8805612 AAATAGAGGCT-CT-AT
60 AAA-AG-GGCTCCTCAT
* * *
8805627 AATAGAGGCACAACTTTTAAAATAAGGCTCTTAAATAATAGAGGCATGCAACTTTAAAAATAAGG
1 AATAGAGGCACAACTTTTAAAATAAGGCTCTTAAATAATAAAGGCATACAACTTTAAAAAAAAGG
*
8805692 GCTCCTCCGT
66 GCTCCT-CAT
**
8805702 AATAGAGGCATACAA-TTTTAAAAATAAGGACTCTTCCATAATAAAGGCATAACAACTTTAAA
1 AATAGAGGC--ACAACTTTT-AAAATAAGG-CTCTTAAATAATAAAGGCAT-ACAACTTTAAA
8805764 GATAAAAGCT
Statistics
Matches: 117, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
72 4 0.03
73 4 0.03
74 4 0.03
75 38 0.32
76 5 0.04
77 21 0.18
78 23 0.20
79 10 0.09
80 8 0.07
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.26
Consensus pattern (74 bp):
AATAGAGGCACAACTTTTAAAATAAGGCTCTTAAATAATAAAGGCATACAACTTTAAAAAAAAGG
GCTCCTCAT
Found at i:8805788 original size:79 final size:75
Alignment explanation
Indices: 8805588--8805941 Score: 230
Period size: 79 Copynumber: 4.6 Consensus size: 75
8805578 ACTGTTTAAC
* *** *
8805588 AATAAAGGCATACAACTTTAAGAAA-AATAGAGGCTCTATAATAGAGGC-ACAACTTTTAAAATA
1 AATAAAGGCATACAACTTTAA-AAATAAAAGCTCCTCCATAATAGAGGCAACAA-TTTTAAAATA
8805651 AGGCTCTTAAAT
64 AGGCTCTTAAAT
* * ** *
8805663 AATAGAGGCATGCAACTTTAAAAATAAGGGCTCCTCCGTAATAGAGGCATACAATTTTAAAAATA
1 AATAAAGGCATACAACTTTAAAAATAAAAGCTCCTCCATAATAGAGGCA-ACAATTTT-AAAATA
**
8805728 AGGACTCTTCCAT
64 AGG-CTCTTAAAT
* ** * *
8805741 AATAAAGGCATAACAACTTTAAAGATAAAAGCTTTTCCATTATAGAGGCACACAACTTTGAAAAT
1 AATAAAGGCAT-ACAACTTTAAAAATAAAAGCTCCTCCATAATAGAGGCA-ACAA-TTTTAAAAT
* * **
8805806 AAAGGTTCCTCTAT
63 -AAGGCTCTTAAAT
* * * * * *
8805820 AA-AAGAGACACAACAACTTTTTAAAATAAAAACTCCTCCATAATATAGGCACAACAACTTTAAA
1 AATAA-AGGCA-TACAAC-TTTAAAAATAAAAGCTCCTCCATAATAGAGG--CAACAA-TTTTAA
* * *
8805884 AATAAGTCTCCTCAAT
60 AATAAGGCTCTTAAAT
* * * * *
8805900 AATAGAGGCACATAA-TTTTAAAATAAAGGCTCCTCCATAATA
1 AATAAAGGCATACAACTTTAAAAATAAAAGCTCCTCCATAATA
8805942 AAGGTATAAC
Statistics
Matches: 221, Mismatches: 44, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
74 3 0.01
75 35 0.16
76 4 0.02
77 38 0.17
78 19 0.09
79 59 0.27
80 47 0.21
81 14 0.06
82 2 0.01
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.26
Consensus pattern (75 bp):
AATAAAGGCATACAACTTTAAAAATAAAAGCTCCTCCATAATAGAGGCAACAATTTTAAAATAAG
GCTCTTAAAT
Found at i:8805808 original size:39 final size:39
Alignment explanation
Indices: 8805625--8806000 Score: 264
Period size: 39 Copynumber: 9.6 Consensus size: 39
8805615 TAGAGGCTCT
* * * **
8805625 ATAATAGAGG--CACAACTTTTAAAAT-AAGGCTCTTAA
1 ATAATAGAGGCACACAACTTTAAAAATAAAAGCTCCTCC
** **
8805661 ATAATAGAGGCATGCAACTTTAAAAATAAGGGCTCCTCC
1 ATAATAGAGGCACACAACTTTAAAAATAAAAGCTCCTCC
* * * * *
8805700 GTAATAGAGGCATACAATTTTAAAAAT-AAGGACTCTTCC
1 ATAATAGAGGCACACAACTTTAAAAATAAAAG-CTCCTCC
* * * **
8805739 ATAATAAAGGCATAACAACTTTAAAGATAAAAGCTTTTCC
1 ATAATAGAGGCA-CACAACTTTAAAAATAAAAGCTCCTCC
* * * * *
8805779 ATTATAGAGGCACACAACTTTGAAAATAAAGGTTCCTCT
1 ATAATAGAGGCACACAACTTTAAAAATAAAAGCTCCTCC
* * * *
8805818 ATAAAAGAGACACAACAACTTTTTAAAATAAAAACTCCTCC
1 ATAATAGAGGCAC-ACAAC-TTTAAAAATAAAAGCTCCTCC
* *
8805859 ATAATATAGGCACAACAACTTTAAAAAT--AAGTCTCCTCA
1 ATAATAGAGGCAC-ACAACTTTAAAAATAAAAG-CTCCTCC
* * *
8805898 ATAATAGAGGCACATAA-TTTTAAAATAAAGGCTCCTCC
1 ATAATAGAGGCACACAACTTTAAAAATAAAAGCTCCTCC
* * * * *
8805936 ATAATAAAGGTATAACAACTTTAAAAAATAAAGGCTCCTCT
1 ATAATAGAGGCA-CACAACTTT-AAAAATAAAAGCTCCTCC
8805977 ATAATTA-AGGCACAACAACTTTAA
1 ATAA-TAGAGGCAC-ACAACTTTAA
8806001 TCATGACTAC
Statistics
Matches: 268, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
36 10 0.04
37 8 0.03
38 36 0.13
39 99 0.37
40 46 0.17
41 67 0.25
42 2 0.01
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.26
Consensus pattern (39 bp):
ATAATAGAGGCACACAACTTTAAAAATAAAAGCTCCTCC
Found at i:8805816 original size:118 final size:118
Alignment explanation
Indices: 8805636--8806000 Score: 360
Period size: 118 Copynumber: 3.1 Consensus size: 118
8805626 TAATAGAGGC
* * * * * ** * *
8805636 ACAACTTTTAAAATAAGGCTCTTAAATAATAGAGGCATGCAACTTTAAAAATAAGGGCTCCTCCG
1 ACAACTTTAAAAAAAAGTCTCCTCAATAATAGAGGCACACAACTTTAAAAATAAAGGCTCCTCCA
* *
8805701 TAATAGAGGCATACAA-TTTTAAAAATAAGGACTCTTCCATAATAAAGGCATA
66 TAATAGAGGCATACAACTTTTAAAAATAAGGACTCCTCCATAATAAAGGCACA
** * * * *
8805753 ACAACTTTAAAGATAAAAG-CTTTTCCATTATAGAGGCACACAACTTTGAAAATAAAGGTTCCTC
1 ACAACTTTAAA-A-AAAAGTCTCCTCAATAATAGAGGCACACAACTTTAAAAATAAAGGCTCCTC
* * * * * ** *
8805817 TATAAAAGAGACACAACAACTTTTTAAAATAAAAACTCCTCCATAATATAGGCACA
64 CATAATAGAGGCA-TACAACTTTTAAAAATAAGGACTCCTCCATAATAAAGGCACA
* * *
8805873 ACAACTTTAAAAATAAGTCTCCTCAATAATAGAGGCACATAA-TTTTAAAATAAAGGCTCCTCCA
1 ACAACTTTAAAAAAAAGTCTCCTCAATAATAGAGGCACACAACTTTAAAAATAAAGGCTCCTCCA
* * * * *
8805937 TAATAAAGGTATAACAACTTTAAAAAATAAAGG-CTCCTCTATAATTAAGGCACA
66 TAATAGAGGCAT-ACAACTTTTAAAAAT-AAGGACTCCTCCATAATAAAGGCACA
8805991 ACAACTTTAA
1 ACAACTTTAA
8806001 TCATGACTAC
Statistics
Matches: 198, Mismatches: 43, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
117 10 0.05
118 117 0.59
119 30 0.15
120 41 0.21
ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26
Consensus pattern (118 bp):
ACAACTTTAAAAAAAAGTCTCCTCAATAATAGAGGCACACAACTTTAAAAATAAAGGCTCCTCCA
TAATAGAGGCATACAACTTTTAAAAATAAGGACTCCTCCATAATAAAGGCACA
Found at i:8805870 original size:80 final size:79
Alignment explanation
Indices: 8805675--8805998 Score: 238
Period size: 79 Copynumber: 4.1 Consensus size: 79
8805665 TAGAGGCATG
* ** * * * * * *
8805675 CAAC-TTTAAAAATAAGGGCTCCTCCGTAATAGAGGCATACAATTTTAAAAAT-AAGGACTCTTC
1 CAACTTTTTAAAATAAAAGCTCCTCCATAATAAAGGCACACAACTTTAAAAATAAAGG-TTCCTC
* *
8805738 CATAATAA-AGGCATAA
65 TATAA-AAGA-GCACAA
** * * *
8805754 CAAC--TTTAAAGATAAAAGCTTTTCCATTATAGAGGCACACAACTTTGAAAATAAAGGTTCCTC
1 CAACTTTTTAAA-ATAAAAGCTCCTCCATAATAAAGGCACACAACTTTAAAAATAAAGGTTCCTC
8805817 TATAAAAGAGACACAA
65 TATAAAAGAG-CACAA
* *
8805833 CAACTTTTTAAAATAAAAACTCCTCCATAATATAGGCACAACAACTTTAAAAAT-AA-GTCTCCT
1 CAACTTTTTAAAATAAAAGCTCCTCCATAATAAAGGCAC-ACAACTTTAAAAATAAAGGT-TCCT
* *
8805896 CAATAATAGAGGCAC-A
64 CTATAAAAGA-GCACAA
* * * * *
8805912 TAA--TTTTAAAATAAAGGCTCCTCCATAATAAAGGTATAACAACTTTAAAAAATAAAGGCTCCT
1 CAACTTTTTAAAATAAAAGCTCCTCCATAATAAAGGCA-CACAACTTT-AAAAATAAAGGTTCCT
8805975 CTATAATTAAG-GCACAA
64 CTATAA--AAGAGCACAA
8805992 CAACTTT
1 CAACTTT
8805999 AATCATGACT
Statistics
Matches: 195, Mismatches: 32, Indels: 33
0.75 0.12 0.13
Matches are distributed among these distances:
77 37 0.19
78 14 0.07
79 73 0.37
80 47 0.24
81 22 0.11
82 2 0.01
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.26
Consensus pattern (79 bp):
CAACTTTTTAAAATAAAAGCTCCTCCATAATAAAGGCACACAACTTTAAAAATAAAGGTTCCTCT
ATAAAAGAGCACAA
Found at i:8805870 original size:159 final size:158
Alignment explanation
Indices: 8805693--8805998 Score: 350
Period size: 159 Copynumber: 1.9 Consensus size: 158
8805683 AAAATAAGGG
* * * * *
8805693 CTCCTCCGTAATAGAGGCA-TACAATTTTAAAAATAAGGACTCTTCCATAATAAAGGCATAACAA
1 CTCCTCCATAATAGAGGCACAACAACTTTAAAAATAA-GACTCCTCAATAATAAAGGCA-AACAA
** * * * * *
8805757 CTTTAAAGATAAAAGCTTTTCCATTATAGAGGCA-CACAACTTT-GAAAATAAAGGTTCCTCTAT
64 CTTTAAA-ATAAAAGCTCCTCCATAATAAAGGCATAACAACTTTAAAAAATAAAGGCTCCTCTAT
8805820 AA-AAGAGACACAACAACTTTTTAAAATAAAAA
128 AATAAG-G-CACAACAACTTTTTAAAATAAAAA
* * * * * *
8805852 CTCCTCCATAATATAGGCACAACAACTTTAAAAATAAGTCTCCTCAATAATAGAGGCACATAATT
1 CTCCTCCATAATAGAGGCACAACAACTTTAAAAATAAGACTCCTCAATAATAAAGGCAAACAACT
* *
8805917 TTAAAATAAAGGCTCCTCCATAATAAAGGTATAACAACTTTAAAAAATAAAGGCTCCTCTATAAT
66 TTAAAATAAAAGCTCCTCCATAATAAAGGCATAACAACTTTAAAAAATAAAGGCTCCTCTATAA-
8805982 TAAGGCACAACAACTTT
130 TAAGGCACAACAACTTT
8805999 AATCATGACT
Statistics
Matches: 122, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
157 20 0.16
158 17 0.14
159 66 0.54
160 16 0.13
161 3 0.02
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.26
Consensus pattern (158 bp):
CTCCTCCATAATAGAGGCACAACAACTTTAAAAATAAGACTCCTCAATAATAAAGGCAAACAACT
TTAAAATAAAAGCTCCTCCATAATAAAGGCATAACAACTTTAAAAAATAAAGGCTCCTCTATAAT
AAGGCACAACAACTTTTTAAAATAAAAA
Found at i:8812973 original size:4 final size:4
Alignment explanation
Indices: 8812964--8813093 Score: 63
Period size: 4 Copynumber: 31.0 Consensus size: 4
8812954 TGAAGATAAC
* *
8812964 AAAT AAAT AAAT AAAT AAAT -AAT -AAT -AAT AAAAC AAAGT AAAT CAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA-T AAAT AAAT
* * * *
8813011 AGAT AAAAT TAAT AAGA- AATAT ACAA- AAAT AGAT AATGAT AAAA AAAT
1 AAAT -AAAT AAAT AA-AT AA-AT A-AAT AAAT AAAT AA--AT AAAT AAAT
*
8813059 AAAT AAAT AAGAT AAAT ATAT AAACAT AAAT AAAT
1 AAAT AAAT AA-AT AAAT AAAT -AA-AT AAAT AAAT
8813094 GCAATAGAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 26
0.71 0.11 0.19
Matches are distributed among these distances:
3 11 0.11
4 62 0.63
5 18 0.18
6 7 0.07
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:8813058 original size:18 final size:18
Alignment explanation
Indices: 8812964--8813064 Score: 68
Period size: 18 Copynumber: 5.6 Consensus size: 18
8812954 TGAAGATAAC
*
8812964 AAATAAATAA--ATAAAT
1 AAATAAATAATGATAAAA
*
8812980 AAAT-AATAATAATAAAA
1 AAATAAATAATGATAAAA
8812997 CAAAGTAAATCAATAGATAAAA
1 -AAA-TAAAT-AAT-GATAAAA
* *
8813019 TTAATAAGA-AAT-ATACAA
1 -AAATAA-ATAATGATAAAA
*
8813037 AAATAGATAATGATAAAA
1 AAATAAATAATGATAAAA
8813055 AAATAAATAA
1 AAATAAATAA
8813065 ATAAGATAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
15 5 0.08
16 5 0.08
17 12 0.18
18 22 0.33
19 1 0.02
20 6 0.09
21 6 0.09
22 9 0.14
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (18 bp):
AAATAAATAATGATAAAA
Found at i:8813071 original size:27 final size:26
Alignment explanation
Indices: 8812965--8813093 Score: 102
Period size: 27 Copynumber: 4.7 Consensus size: 26
8812955 GAAGATAACA
*
8812965 AATAAATAAATAAATAAATA-ATAAT
1 AATAAAAAAATAAATAAATAGATAAT
*
8812990 AATAAAACAAAGTAAATCAATAGATAA-
1 AATAAAA-AAA-TAAATAAATAGATAAT
*
8813017 AATTAATAAGAAATATACAAAAATAGATAAT
1 AA-TAA-AA-AAATA-A-ATAAATAGATAAT
*
8813048 GATAAAAAAATAAATAAATAAGATAA-
1 AATAAAAAAATAAATAAAT-AGATAAT
* *
8813074 ATATATAAACATAAATAAAT
1 A-ATAAAAAAATAAATAAAT
8813094 GCAATAGAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
25 6 0.07
26 8 0.10
27 34 0.40
28 14 0.17
29 8 0.10
30 13 0.15
31 1 0.01
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (26 bp):
AATAAAAAAATAAATAAATAGATAAT
Found at i:8813204 original size:26 final size:26
Alignment explanation
Indices: 8813175--8813224 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
8813165 TGCTTGTATC
*
8813175 GAATCCAAACCCAATTAGTTTGGGTT
1 GAATCCAAACCCAATTAATTTGGGTT
* *
8813201 GAATCCTAGCCCAATTAATTTGGG
1 GAATCCAAACCCAATTAATTTGGG
8813225 CCTCAGACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
GAATCCAAACCCAATTAATTTGGGTT
Found at i:8815297 original size:34 final size:34
Alignment explanation
Indices: 8815254--8815330 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 34
8815244 AAAAAAATCA
**
8815254 ACAACCAAAATAATATTATTATGTAAAAATTTTT
1 ACAACCAAAATAATATTATTACATAAAAATTTTT
* *
8815288 ACAATCAAAATAATATTGTTACATAAAAATTTTT
1 ACAACCAAAATAATATTATTACATAAAAATTTTT
**
8815322 GTAACCAAA
1 ACAACCAAA
8815331 TTTTATGGTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.51, C:0.10, G:0.04, T:0.35
Consensus pattern (34 bp):
ACAACCAAAATAATATTATTACATAAAAATTTTT
Found at i:8815489 original size:34 final size:35
Alignment explanation
Indices: 8815408--8815494 Score: 99
Period size: 35 Copynumber: 2.5 Consensus size: 35
8815398 ACAATATTGT
** * *
8815408 TGTTACATAAAA-AATTTGACAACCAAAATAATAT
1 TGTTACATAAAATTTTTTGACAACAAAAATAATAA
8815442 TGTTATGCA-AAAATTTTTTG-CAACAAAAATAATAA
1 TGTTA--CATAAAATTTTTTGACAACAAAAATAATAA
8815477 TGTTACATAAAATTTTTT
1 TGTTACATAAAATTTTTT
8815495 TAATCAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
33 2 0.04
34 15 0.33
35 22 0.49
36 6 0.13
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (35 bp):
TGTTACATAAAATTTTTTGACAACAAAAATAATAA
Found at i:8815505 original size:172 final size:171
Alignment explanation
Indices: 8815216--8815543 Score: 455
Period size: 172 Copynumber: 1.9 Consensus size: 171
8815206 CAAAATATTA
* *
8815216 TTTAGCAATCACAATATTGTTGTTACGTAAAAAAATCAACAACCAAAATAATATTATTATGTAAA
1 TTTAGCAATCACAATATTGTTGTTACATAAAAAAATCAACAACCAAAATAATATTATTATGCAAA
* * *
8815281 AATTTTTACAATCAAAATAATATTGTTACATAAAAATTTTTGTAACCAAATTTTATGGTTGTTAA
66 AATTTTTACAATCAAAATAATAATGTTACATAAAAATTTTTGTAACCAAA-TTTATGATTGCTAA
* * *
8815346 ACTGAAGTTTATACAATGACATTTTATCATTGCAAATTATGT
130 AATAAAGTTTACACAATGACATTTTATCATTGCAAATTATGT
* ** *
8815388 TTTAGCAA-CTACAATATTGTTGTTACATAAAAAATTTGACAACCAAAATAATATTGTTATGCAA
1 TTTAGCAATC-ACAATATTGTTGTTACATAAAAAAATCAACAACCAAAATAATATTATTATGCAA
* * * *
8815452 AAATTTTTTGCAA-CAAAAATAATAATGTTACAT-AAAATTTTTTTAATCAAATTTATTATTGCT
65 AAA-TTTTTACAATC-AAAATAATAATGTTACATAAAAATTTTTGTAACCAAATTTATGATTGCT
8815515 AAAATAAAGTTTACACAATGACATTTTAT
128 AAAATAAAGTTTACACAATGACATTTTAT
8815544 TGCTGTGAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
171 36 0.26
172 76 0.55
173 25 0.18
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.38
Consensus pattern (171 bp):
TTTAGCAATCACAATATTGTTGTTACATAAAAAAATCAACAACCAAAATAATATTATTATGCAAA
AATTTTTACAATCAAAATAATAATGTTACATAAAAATTTTTGTAACCAAATTTATGATTGCTAAA
ATAAAGTTTACACAATGACATTTTATCATTGCAAATTATGT
Found at i:8817902 original size:20 final size:20
Alignment explanation
Indices: 8817865--8817947 Score: 103
Period size: 20 Copynumber: 4.2 Consensus size: 20
8817855 TTTAATGCAA
***
8817865 GTTTAGGGTTTAAAGTTTTG
1 GTTTAGGGTTTGGGGTTTTG
*
8817885 GCTTAGGGTTTGGGGTTTTG
1 GTTTAGGGTTTGGGGTTTTG
*
8817905 GTTTAGAGTTTGGGGTTTTG
1 GTTTAGGGTTTGGGGTTTTG
* *
8817925 GTTTAAGGTTTGAGGTTTTG
1 GTTTAGGGTTTGGGGTTTTG
8817945 GTT
1 GTT
8817948 CGGTTTATGG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.12, C:0.01, G:0.37, T:0.49
Consensus pattern (20 bp):
GTTTAGGGTTTGGGGTTTTG
Found at i:8817983 original size:19 final size:20
Alignment explanation
Indices: 8817958--8818027 Score: 72
Period size: 19 Copynumber: 3.5 Consensus size: 20
8817948 CGGTTTATGG
* *
8817958 TTAGTTTAGGGCTTGAAGGT
1 TTAGTTTAGGGATTAAAGGT
*
8817978 TT-GTTTTGGGATTTAAAGGT
1 TTAGTTTAGGGA-TTAAAGGT
* *
8817998 TTGGTTTA-GGATTTAAGGT
1 TTAGTTTAGGGATTAAAGGT
8818017 TTAGTTTAGGG
1 TTAGTTTAGGG
8818028 TTTAGGGTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
19 21 0.51
20 16 0.39
21 4 0.10
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.46
Consensus pattern (20 bp):
TTAGTTTAGGGATTAAAGGT
Found at i:8817998 original size:20 final size:19
Alignment explanation
Indices: 8817973--8818045 Score: 76
Period size: 20 Copynumber: 3.8 Consensus size: 19
8817963 TTAGGGCTTG
8817973 AAGGTTTGTTTTGGGATTT
1 AAGGTTTGTTTTGGGATTT
* *
8817992 AAAGGTTTGGTTTAGGATTT
1 -AAGGTTTGTTTTGGGATTT
*
8818012 AAGGTTTAGTTTAGGG-TTT
1 AAGGTTT-GTTTTGGGATTT
* *
8818031 AGGGTTGGTTTTGGG
1 AAGGTTTGTTTTGGG
8818046 TTTGGTTAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
18 7 0.16
19 15 0.34
20 22 0.50
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.47
Consensus pattern (19 bp):
AAGGTTTGTTTTGGGATTT
Found at i:8818132 original size:20 final size:19
Alignment explanation
Indices: 8818107--8818164 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
8818097 TTAGGATTTG
8818107 AAGGTTTATTTTGGGGTTTA
1 AAGGTTTA-TTTGGGGTTTA
*
8818127 AAGGTTTGATTTGGGATTT-
1 AAGGTTT-ATTTGGGGTTTA
*
8818146 GAGG-TTAGTTTGGGGTTTA
1 AAGGTTTA-TTTGGGGTTTA
8818165 GTTAGGGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 1 0.03
18 11 0.34
19 3 0.09
20 16 0.50
21 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.34, T:0.47
Consensus pattern (19 bp):
AAGGTTTATTTGGGGTTTA
Found at i:8818232 original size:20 final size:20
Alignment explanation
Indices: 8818196--8818234 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8818186 AAAAGATTTA
*
8818196 AGGGTTTTGTATGAGGTTTT
1 AGGGTTTTGTATAAGGTTTT
8818216 AGGG-TTTGTATAAAGGTTT
1 AGGGTTTTGTAT-AAGGTTT
8818235 AGGTTCTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (20 bp):
AGGGTTTTGTATAAGGTTTT
Found at i:8818292 original size:19 final size:19
Alignment explanation
Indices: 8818268--8818322 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 19
8818258 AAAGTTTAGG
*
8818268 GGTTTAGATAGGGATTTAA
1 GGTTTAAATAGGGATTTAA
* *
8818287 GGTTTACATGAAGG-TTT-A
1 GGTTTAAAT-AGGGATTTAA
*
8818305 GGGTTAAATAGGGATTTA
1 GGTTTAAATAGGGATTTA
8818323 TGAACCTCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
17 3 0.11
18 11 0.39
19 11 0.39
20 3 0.11
ACGTcount: A:0.31, C:0.02, G:0.31, T:0.36
Consensus pattern (19 bp):
GGTTTAAATAGGGATTTAA
Found at i:8818297 original size:39 final size:37
Alignment explanation
Indices: 8818248--8818322 Score: 105
Period size: 39 Copynumber: 2.0 Consensus size: 37
8818238 TTCTACATAG
* *
8818248 GGTTTGCATGAAAGTTTAGGGGTTTAGATAGGGATTTAA
1 GGTTTACATGAAAGTTTA-GGG-TTAAATAGGGATTTAA
*
8818287 GGTTTACATGAAGGTTTAGGGTTAAATAGGGATTTA
1 GGTTTACATGAAAGTTTAGGGTTAAATAGGGATTTA
8818323 TGAACCTCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 14 0.42
38 3 0.09
39 16 0.48
ACGTcount: A:0.29, C:0.03, G:0.32, T:0.36
Consensus pattern (37 bp):
GGTTTACATGAAAGTTTAGGGTTAAATAGGGATTTAA
Found at i:8820465 original size:19 final size:19
Alignment explanation
Indices: 8820443--8820495 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
8820433 ATTGTCATTA
8820443 ATTGATCAATAATTAAATG
1 ATTGATCAATAATTAAATG
8820462 ATTGATCAAT-ATTAAA--
1 ATTGATCAATAATTAAATG
8820478 ATT--T-AATAATTAAATG
1 ATTGATCAATAATTAAATG
8820494 AT
1 AT
8820496 CAATATGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
13 3 0.10
14 7 0.23
16 5 0.16
18 6 0.19
19 10 0.32
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.40
Consensus pattern (19 bp):
ATTGATCAATAATTAAATG
Found at i:8820489 original size:32 final size:30
Alignment explanation
Indices: 8820450--8820521 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 30
8820440 TTAATTGATC
* *
8820450 AATAATTAAATGATTGATCAATATTAAAATTT
1 AATAATTAAAT-A-TGATCAATATGAAAATTA
8820482 AATAATT-AA-ATGATCAATATGAAAATTA
1 AATAATTAAATATGATCAATATGAAAATTA
8820510 AATAATTAAATA
1 AATAATTAAATA
8820522 ATAGTTTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
28 23 0.64
29 3 0.08
30 1 0.03
31 2 0.06
32 7 0.19
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (30 bp):
AATAATTAAATATGATCAATATGAAAATTA
Found at i:8820496 original size:28 final size:28
Alignment explanation
Indices: 8820464--8820520 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
8820454 ATTAAATGAT
* *
8820464 TGATCAATATTAAAATTTAATAATTAAA
1 TGATCAATATGAAAATTAAATAATTAAA
8820492 TGATCAATATGAAAATTAAATAATTAAA
1 TGATCAATATGAAAATTAAATAATTAAA
8820520 T
1 T
8820521 AATAGTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.54, C:0.04, G:0.05, T:0.37
Consensus pattern (28 bp):
TGATCAATATGAAAATTAAATAATTAAA
Found at i:8823978 original size:21 final size:20
Alignment explanation
Indices: 8823946--8823984 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8823936 AAAATACTCA
*
8823946 TTTACTTGTCTTAACTATAG
1 TTTACTTCTCTTAACTATAG
*
8823966 TTTATCTTCTCTTCACTAT
1 TTTA-CTTCTCTTAACTAT
8823985 GGAGATTGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTACTTCTCTTAACTATAG
Found at i:8833896 original size:18 final size:18
Alignment explanation
Indices: 8833873--8833915 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8833863 GGGATAGGAT
*
8833873 ACTTGTTTTTTATGG-TCA
1 ACTTGTTTTTGATGGCT-A
8833891 ACTTGTTTTTGATGGCTA
1 ACTTGTTTTTGATGGCTA
8833909 ACTTGTT
1 ACTTGTT
8833916 CAGTGCCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 22 0.96
19 1 0.04
ACGTcount: A:0.16, C:0.12, G:0.19, T:0.53
Consensus pattern (18 bp):
ACTTGTTTTTGATGGCTA
Found at i:8837429 original size:34 final size:34
Alignment explanation
Indices: 8837391--8837460 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
8837381 AAAGGTTTTG
*
8837391 TTACAAGGGATCTTGGTGATATATTTTTTGATGA
1 TTACAAGGGATCTTGGTGATAGATTTTTTGATGA
*
8837425 TTACAAGGGATGTTGGTGATAGATTTTTTGATGA
1 TTACAAGGGATCTTGGTGATAGATTTTTTGATGA
8837459 TT
1 TT
8837461 CCTTCCTAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.04, G:0.26, T:0.44
Consensus pattern (34 bp):
TTACAAGGGATCTTGGTGATAGATTTTTTGATGA
Found at i:8837603 original size:21 final size:21
Alignment explanation
Indices: 8837579--8837637 Score: 82
Period size: 22 Copynumber: 2.8 Consensus size: 21
8837569 CTAAAGGACG
* *
8837579 GTGAGTCATAACTATGGTACA
1 GTGACTCATTACTATGGTACA
*
8837600 GTGACTCATTACTTATGGTACG
1 GTGACTCATTAC-TATGGTACA
8837622 GTGACTCATTACTATG
1 GTGACTCATTACTATG
8837638 ACTCATACTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 14 0.41
22 20 0.59
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (21 bp):
GTGACTCATTACTATGGTACA
Found at i:8848847 original size:137 final size:137
Alignment explanation
Indices: 8848597--8848857 Score: 398
Period size: 137 Copynumber: 1.9 Consensus size: 137
8848587 AGTTGGATCA
* * *
8848597 ATCTACACGCTGTTGTCATAGTACCAGATAGTATTGTCAAGACTCTACCATCTGGAGAGCTCGAA
1 ATCTACACGCTGTTGTCATAGTACCAGATAGTATTGTCAAGACTCTACCACCCGGAGAGCCCGAA
* *
8848662 ACTGAAACCGTATCAGTTACTAGAGCCTTGATCGTACTACATGCCGCTGTGTATAGAAATGGTAT
66 ACTGAAACCGTATCAGTTACCAGAGCCTTGACCGTACTACATGCCGCTGTGTATAGAAATGGTAT
8848727 CAAAGCG
131 CAAAGCG
*
8848734 ATCTACACGCTGTTGTCATAGTACCAGATAGTATTGTCAGGACTCTACCACCCGGAGAGCCCGAA
1 ATCTACACGCTGTTGTCATAGTACCAGATAGTATTGTCAAGACTCTACCACCCGGAGAGCCCGAA
* * * * * *
8848799 ACTGAAGCCGTGTCAGTTGCCAGAG-CTTGGGCCGTACTACCTGTCGCTGTGTATAGAAA
66 ACTGAAACCGTATCAGTTACCAGAGCCTT-GACCGTACTACATGCCGCTGTGTATAGAAA
8848858 GACATATTAA
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
136 3 0.03
137 108 0.97
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (137 bp):
ATCTACACGCTGTTGTCATAGTACCAGATAGTATTGTCAAGACTCTACCACCCGGAGAGCCCGAA
ACTGAAACCGTATCAGTTACCAGAGCCTTGACCGTACTACATGCCGCTGTGTATAGAAATGGTAT
CAAAGCG
Found at i:8849408 original size:56 final size:56
Alignment explanation
Indices: 8849322--8849435 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
8849312 AATGATATAT
* *
8849322 TAAAAAAATAAAGGATAAAAATATACGATTAAGGTTAGTTTATAGTATAAATATCA
1 TAAAAAAATAAAGGATAAAAATATACGATTAAGGTTAATTTATAATATAAATATCA
*
8849378 TAAAAAAATAAAGGATAAAAATATATGATTAAGGTTAATTTATAATATAAATATCA
1 TAAAAAAATAAAGGATAAAAATATACGATTAAGGTTAATTTATAATATAAATATCA
8849434 TA
1 TA
8849436 GGTGATTTTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.55, C:0.03, G:0.11, T:0.32
Consensus pattern (56 bp):
TAAAAAAATAAAGGATAAAAATATACGATTAAGGTTAATTTATAATATAAATATCA
Found at i:8851461 original size:2 final size:2
Alignment explanation
Indices: 8851454--8851483 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8851444 TTTTTAGCTC
8851454 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8851484 CATAATCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8851740 original size:30 final size:30
Alignment explanation
Indices: 8851704--8851761 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
8851694 CGGCTGGCTT
8851704 TATATATATATATATATATGTAAATTGCCA
1 TATATATATATATATATATGTAAATTGCCA
8851734 TATATATATATATATATATGTAAATTGC
1 TATATATATATATATATATGTAAATTGC
8851762 AATGCATTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (30 bp):
TATATATATATATATATATGTAAATTGCCA
Found at i:8854348 original size:51 final size:50
Alignment explanation
Indices: 8854260--8854371 Score: 134
Period size: 51 Copynumber: 2.2 Consensus size: 50
8854250 TCTAACCTTC
* * * **
8854260 GCATTCGAATGCCTTGCAAACTTGTAACTTCTGTTTCATTTTATTTCATGG
1 GCATTCGAATGCATTGCAAACTTATAACTTCTATTTCATTTTACGTCAT-G
* * * *
8854311 GCATTCGAATGCATTGTAAACTTATACCTTTTATTTCATTTTCCGTCATG
1 GCATTCGAATGCATTGCAAACTTATAACTTCTATTTCATTTTACGTCATG
8854361 GCATTCGAATG
1 GCATTCGAATG
8854372 TCTTATATAT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
50 12 0.23
51 40 0.77
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (50 bp):
GCATTCGAATGCATTGCAAACTTATAACTTCTATTTCATTTTACGTCATG
Found at i:8858061 original size:19 final size:19
Alignment explanation
Indices: 8858013--8858066 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
8858003 CCCTAATCCC
*
8858013 TAAATCGAACCCTAAACTT
1 TAAACCGAACCCTAAACTT
*
8858032 TAAACCAAACCCTAAA-TCT
1 TAAACCGAACCCTAAACT-T
*
8858051 TAAACTGAACCC-AAAC
1 TAAACCGAACCCTAAAC
8858067 CCTAAACTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 4 0.14
19 25 0.86
ACGTcount: A:0.46, C:0.30, G:0.04, T:0.20
Consensus pattern (19 bp):
TAAACCGAACCCTAAACTT
Found at i:8858235 original size:19 final size:19
Alignment explanation
Indices: 8858211--8858264 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
8858201 ACTTTAAACC
*
8858211 AAACCTCAATCCAAACCAT
1 AAACCTCAAACCAAACCAT
* *
8858230 AAACCTCAAACCATACCTT
1 AAACCTCAAACCAAACCAT
8858249 AAACC-CTAAACCAAAC
1 AAACCTC-AAACCAAAC
8858265 TCTAAAACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 1 0.03
19 29 0.97
ACGTcount: A:0.48, C:0.37, G:0.00, T:0.15
Consensus pattern (19 bp):
AAACCTCAAACCAAACCAT
Found at i:8863302 original size:16 final size:17
Alignment explanation
Indices: 8863262--8863322 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
8863252 TTTTGTAGGA
*
8863262 ATTTGCATGACTACTATTAT
1 ATTTGCAT-AATA-TATT-T
8863282 ATTTGCATAATA-ATTT
1 ATTTGCATAATATATTT
*
8863298 ATTTGCCTAATATATTT
1 ATTTGCATAATATATTT
*
8863315 GTTTGCAT
1 ATTTGCAT
8863323 GTTTAATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 12 0.33
17 13 0.36
19 3 0.08
20 8 0.22
ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49
Consensus pattern (17 bp):
ATTTGCATAATATATTT
Found at i:8863319 original size:17 final size:16
Alignment explanation
Indices: 8863281--8863322 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
8863271 ACTACTATTA
8863281 TATTTGCATAATAATT
1 TATTTGCATAATAATT
*
8863297 TATTTGCCTAATATATT
1 TATTTGCATAATA-ATT
*
8863314 TGTTTGCAT
1 TATTTGCAT
8863323 GTTTAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.29, C:0.10, G:0.10, T:0.52
Consensus pattern (16 bp):
TATTTGCATAATAATT
Found at i:8863339 original size:25 final size:25
Alignment explanation
Indices: 8863310--8863477 Score: 75
Period size: 24 Copynumber: 7.3 Consensus size: 25
8863300 TTGCCTAATA
*
8863310 TATTTGTTTGCATGT-TTAATATATT
1 TATTTGTGTG-ATGTATTAATATATT
*
8863335 TATTTGTGTGATTTATT-A-ATA--
1 TATTTGTGTGATGTATTAATATATT
** *
8863356 TATTTGCATGAT-TATTAATAAATT
1 TATTTGTGTGATGTATTAATATATT
*
8863380 TATTTGTATGAT-TA-T-ATATAATT
1 TATTTGTGTGATGTATTAATAT-ATT
** *
8863403 TGA-TTGCATAAT-TATTAATATATT
1 T-ATTTGTGTGATGTATTAATATATT
*
8863427 TAATTGCT-TGAT-TATTAATATATT
1 TATTTG-TGTGATGTATTAATATATT
8863451 TATTT-T-T-ATG-ATT-ATATATT
1 TATTTGTGTGATGTATTAATATATT
*
8863471 TAATTGT
1 TATTTGT
8863478 AAATTTATTT
Statistics
Matches: 117, Mismatches: 13, Indels: 30
0.73 0.08 0.19
Matches are distributed among these distances:
20 15 0.13
21 17 0.15
22 7 0.06
23 18 0.15
24 45 0.38
25 15 0.13
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (25 bp):
TATTTGTGTGATGTATTAATATATT
Found at i:8863385 original size:24 final size:24
Alignment explanation
Indices: 8863356--8863465 Score: 109
Period size: 24 Copynumber: 4.6 Consensus size: 24
8863346 TTTATTAATA
8863356 TATTTGCATGATTATTAATAAATT
1 TATTTGCATGATTATTAATAAATT
*
8863380 TATTTGTATGATTA-T-ATATAATT
1 TATTTGCATGATTATTAATA-AATT
* *
8863403 TGA-TTGCATAATTATTAATATATT
1 T-ATTTGCATGATTATTAATAAATT
* * *
8863427 TAATTGCTTGATTATTAATATATT
1 TATTTGCATGATTATTAATAAATT
**
8863451 TATTTTTATGATTAT
1 TATTTGCATGATTAT
8863466 ATATTTAATT
Statistics
Matches: 71, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
22 3 0.04
23 16 0.23
24 49 0.69
25 3 0.04
ACGTcount: A:0.35, C:0.03, G:0.08, T:0.55
Consensus pattern (24 bp):
TATTTGCATGATTATTAATAAATT
Found at i:8863421 original size:47 final size:45
Alignment explanation
Indices: 8863325--8863451 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 45
8863315 GTTTGCATGT
*
8863325 TTAATATATTTATTTGTGTGATT-TATTAATATATTTGCATGATTA
1 TTAATATATTTATTTGT-TGATTATATTAATATATTTGCATAATTA
* *
8863370 TTAATAAATTTATTTGTATGATTATATATAATTTGA-TTGCATAATTA
1 TTAATATATTTATTTGT-TGATTATAT-TAATAT-ATTTGCATAATTA
*
8863417 TTAATATATTTAATTGCTTGA-T-TATTAATATATTT
1 TTAATATATTTATTTG-TTGATTATATTAATATATTT
8863452 ATTTTTATGA
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 7 0.10
45 24 0.34
46 4 0.06
47 32 0.46
48 2 0.03
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (45 bp):
TTAATATATTTATTTGTTGATTATATTAATATATTTGCATAATTA
Done.