Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 50 of 105
Found at i:9616468 original size:44 final size:44
Alignment explanation
Indices: 9616369--9616481 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 44
9616359 ATCCTGGTGT
* * * * *
9616369 AATCTTAAAGTCTTTTGAGCACAATTTCAATGTCTTCTGAGCAC
1 AATCTCAAAGTCTTTTGGGTACAATTTCAAAGTCATCTGAGCAC
* * *
9616413 GATCTCTAAGTCTTTTGGGTACAATTTCAAAGTCATCT-AGGCAT
1 AATCTCAAAGTCTTTTGGGTACAATTTCAAAGTCATCTGA-GCAC
*
9616457 AATTTCAAAGTCTTTTGGGTACAAT
1 AATCTCAAAGTCTTTTGGGTACAAT
9616482 CACAACATCC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 1 0.02
44 56 0.98
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (44 bp):
AATCTCAAAGTCTTTTGGGTACAATTTCAAAGTCATCTGAGCAC
Found at i:9616501 original size:44 final size:44
Alignment explanation
Indices: 9616420--9616533 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 44
9616410 CACGATCTCT
** *
9616420 AAGTCTTTTGGGTACAATTTCAAAGTCATCTAGGCATAATTTCA
1 AAGTCTTTTGGGTACAATCACAAAGTCATCCAGGCATAATTTCA
* * *
9616464 AAGTCTTTTGGGTACAATCACAACA-TCCTCCATGCATATTTTCA
1 AAGTCTTTTGGGTACAATCACAA-AGTCATCCAGGCATAATTTCA
* * *
9616508 ATGT-TTTTCGGGCACAATCTCAAAGT
1 AAGTCTTTT-GGGTACAATCACAAAGT
9616534 TCTTGAGGTA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
43 5 0.09
44 52 0.90
45 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (44 bp):
AAGTCTTTTGGGTACAATCACAAAGTCATCCAGGCATAATTTCA
Found at i:9618167 original size:21 final size:20
Alignment explanation
Indices: 9618132--9618170 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
9618122 TTATATCTTG
*
9618132 CATTTCTTTCATTTTCATCA
1 CATTTCTTGCATTTTCATCA
9618152 CATTTCATTGCATTTTCAT
1 CATTTC-TTGCATTTTCAT
9618171 ATTGGTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.21, C:0.23, G:0.03, T:0.54
Consensus pattern (20 bp):
CATTTCTTGCATTTTCATCA
Found at i:9619550 original size:20 final size:19
Alignment explanation
Indices: 9619491--9619550 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
9619481 TTAAGATATT
9619491 AATTTTTTTATTGCAATAAC
1 AATTTTTTTATTG-AATAAC
* * *
9619511 AATTTATGTATTG--TTA-
1 AATTTTTTTATTGAATAAC
9619527 AATTTTTTTATTGAAATAAC
1 AATTTTTTTATTG-AATAAC
9619547 AATT
1 AATT
9619551 GTAAAATATT
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
16 11 0.37
17 2 0.07
19 2 0.07
20 15 0.50
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.52
Consensus pattern (19 bp):
AATTTTTTTATTGAATAAC
Found at i:9620315 original size:24 final size:24
Alignment explanation
Indices: 9620280--9620351 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
9620270 TCTTTTCAAT
*
9620280 ATAAAGATTTATAATCAATACAAAA
1 ATAAAAATTTATAATCAATA-AAAA
* *
9620305 AT-AAATTTTATAATTAATAAAAA
1 ATAAAAATTTATAATCAATAAAAA
9620328 ATAAAAATTTATAATCAATAAAAA
1 ATAAAAATTTATAATCAATAAAAA
9620352 TTTTTATACT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
23 6 0.15
24 33 0.80
25 2 0.05
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (24 bp):
ATAAAAATTTATAATCAATAAAAA
Found at i:9620341 original size:17 final size:17
Alignment explanation
Indices: 9620316--9620354 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
9620306 TAAATTTTAT
*
9620316 AATTAATAAAAAATAAA
1 AATTTATAAAAAATAAA
**
9620333 AATTTATAATCAATAAA
1 AATTTATAAAAAATAAA
9620350 AATTT
1 AATTT
9620355 TTATACTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
AATTTATAAAAAATAAA
Found at i:9620963 original size:21 final size:20
Alignment explanation
Indices: 9620939--9620981 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
9620929 TTGTATGATG
9620939 TCTATTAACACACCAAAATAA
1 TCTA-TAACACACCAAAATAA
9620960 TC--TAACACACCAAAATAA
1 TCTATAACACACCAAAATAA
9620978 TCTA
1 TCTA
9620982 AGTCTTGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
18 18 0.90
21 2 0.10
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (20 bp):
TCTATAACACACCAAAATAA
Found at i:9620965 original size:18 final size:18
Alignment explanation
Indices: 9620944--9620982 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
9620934 TGATGTCTAT
9620944 TAACACACCAAAATAATC
1 TAACACACCAAAATAATC
9620962 TAACACACCAAAATAATC
1 TAACACACCAAAATAATC
9620980 TAA
1 TAA
9620983 GTCTTGCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.26, G:0.00, T:0.18
Consensus pattern (18 bp):
TAACACACCAAAATAATC
Found at i:9625413 original size:22 final size:22
Alignment explanation
Indices: 9625388--9625431 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
9625378 ATTTTTTGTC
*
9625388 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
9625410 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
9625432 TAAATCTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:9625444 original size:20 final size:21
Alignment explanation
Indices: 9625394--9625444 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
9625384 TGTCCTTAAT
* *
9625394 TCTAGGGATACAAATACTTAAT
1 TCTAGAGATACAAATAC-TAAA
9625416 TCTAGAGATACAAATA-TAAA
1 TCTAGAGATACAAATACTAAA
*
9625436 TCTATAGAT
1 TCTAGAGAT
9625445 TATAAGATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
22 15 0.58
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (21 bp):
TCTAGAGATACAAATACTAAA
Found at i:9639457 original size:21 final size:22
Alignment explanation
Indices: 9639426--9639479 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
9639416 ACAATTTACT
*
9639426 TTTAGGCTCTTTAAA-TTTTAG
1 TTTAAGCTCTTTAAAGTTTTAG
* *
9639447 TTTAAGTTC-TTAAAGTTTTTG
1 TTTAAGCTCTTTAAAGTTTTAG
*
9639468 TTTTAGCTCTTT
1 TTTAAGCTCTTT
9639480 GCATGTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 5 0.19
21 19 0.73
22 2 0.08
ACGTcount: A:0.20, C:0.09, G:0.13, T:0.57
Consensus pattern (22 bp):
TTTAAGCTCTTTAAAGTTTTAG
Found at i:9639472 original size:22 final size:21
Alignment explanation
Indices: 9639403--9639472 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 21
9639393 ATTCATATTT
9639403 GTTTTAAGTTCTTACAA-TTTA
1 GTTTTAAGTTCTTA-AATTTTA
* * *
9639424 CTTTTAGGCTCTTTAAATTTTA
1 GTTTTAAGTTC-TTAAATTTTA
*
9639446 G-TTTAAGTTCTTAAAGTTTTT
1 GTTTTAAGTTCTTAAA-TTTTA
9639467 GTTTTA
1 GTTTTA
9639473 GCTCTTTGCA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
20 5 0.13
21 22 0.58
22 11 0.29
ACGTcount: A:0.24, C:0.09, G:0.11, T:0.56
Consensus pattern (21 bp):
GTTTTAAGTTCTTAAATTTTA
Found at i:9640790 original size:22 final size:22
Alignment explanation
Indices: 9640765--9640807 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
9640755 ATATTCTATC
*
9640765 CTTAATTCTAGATATATAAATT
1 CTTAATTCTAGAGATATAAATT
* *
9640787 CTTAATTTTAGGGATATAAAT
1 CTTAATTCTAGAGATATAAAT
9640808 ATATGCAGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (22 bp):
CTTAATTCTAGAGATATAAATT
Found at i:9644067 original size:25 final size:25
Alignment explanation
Indices: 9644026--9644107 Score: 123
Period size: 25 Copynumber: 3.4 Consensus size: 25
9644016 CAAAATAAAT
*
9644026 TAGAA-AATC-AAGCTGCACTAATG
1 TAGAAGAATCTAATCTGCACTAATG
9644049 TAGAAGAATCTAATCTGCACTAATG
1 TAGAAGAATCTAATCTGCACTAATG
*
9644074 TAGAAGAATCTGATCTGCACTAATG
1 TAGAAGAATCTAATCTGCACTAATG
*
9644099 TAGGAGAAT
1 TAGAAGAAT
9644108 AAGATTTCTA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
23 5 0.09
24 4 0.07
25 45 0.83
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.26
Consensus pattern (25 bp):
TAGAAGAATCTAATCTGCACTAATG
Found at i:9650303 original size:26 final size:27
Alignment explanation
Indices: 9650267--9650329 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 27
9650257 CTAATAGGAT
* *
9650267 GGGTAGGTTAAGAATCTGGTTTT-AAA
1 GGGTTGGTTAAGAATCTAGTTTTAAAA
* *
9650293 GGGTTGGTTAAGATTTTAGTTTTAAAA
1 GGGTTGGTTAAGAATCTAGTTTTAAAA
*
9650320 GAGTTGGTTA
1 GGGTTGGTTA
9650330 GGAAATTGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
26 19 0.61
27 12 0.39
ACGTcount: A:0.29, C:0.02, G:0.30, T:0.40
Consensus pattern (27 bp):
GGGTTGGTTAAGAATCTAGTTTTAAAA
Found at i:9652202 original size:25 final size:25
Alignment explanation
Indices: 9652174--9652224 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
9652164 GAAATCAAGC
*
9652174 TGCACTAATGTAGGAGAATTAGATT
1 TGCACTAATATAGGAGAATTAGATT
* *
9652199 TGCACTATTATATGAGAATTAGATT
1 TGCACTAATATAGGAGAATTAGATT
9652224 T
1 T
9652225 CTACAATACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.20, T:0.37
Consensus pattern (25 bp):
TGCACTAATATAGGAGAATTAGATT
Found at i:9657088 original size:22 final size:22
Alignment explanation
Indices: 9657060--9657102 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
9657050 ATTTTTTATC
*
9657060 CTTAATTTTAAGGATATAAATT
1 CTTAATTTTAAGGATAAAAATT
9657082 CTTAATTTTAAGGATAAAAAT
1 CTTAATTTTAAGGATAAAAAT
9657103 ATATATAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (22 bp):
CTTAATTTTAAGGATAAAAATT
Found at i:9660128 original size:16 final size:17
Alignment explanation
Indices: 9660088--9660140 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 17
9660078 TTTAATTATT
*
9660088 TAATTTTATATTTTTAG
1 TAATTTTCTATTTTTAG
*
9660105 CAATTTTCTATTTTTAG
1 TAATTTTCTATTTTTAG
*
9660122 TAA-TTTCTATATTTAG
1 TAATTTTCTATTTTTAG
9660138 TAA
1 TAA
9660141 GCTTTAATTG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
16 15 0.47
17 17 0.53
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (17 bp):
TAATTTTCTATTTTTAG
Found at i:9666421 original size:158 final size:158
Alignment explanation
Indices: 9665814--9667310 Score: 931
Period size: 158 Copynumber: 9.4 Consensus size: 158
9665804 TTTATGATGG
* * * * *
9665814 AGGACCAACTTTGAAACTAAACAAAAAATGAAAGAGAGTAATG-TTTTTTTGCATAAACAAAAGT
1 AGGACCAACTTTGAAACCAAAC--AAAATGAAAGGGAGAAATGTTTTTTTTG-GTAAACAAAAGC
* * * * *
9665878 AACAATATCATGTACCCAATGGTGATA-AAT-TATTTTGCTTGGTACTTTGTG-AAAGAACTTAT
63 AACAATATCTTGTATCCTATAG-GA-ACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTAT
*
9665940 ACTTTTATTG-TTGCAGGAAATTTGAACGAGTTGA
126 ACTTTTA-TGATTG-AAGAAATTTGAACGAGTTGA
* * **
9665974 AGGACCAACTTTAAAACCAAATAAAATGAAAGGGAGAAATGCCTTTTTTTTTTTATAAACAAAAG
1 AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATG----TTTTTTTTGGTAAACAAAAG
* * * * * *
9666039 CAAGAATATCTTGTATCCTAACAGGAACTATCTATTTTGCTTGGTATTTTGTGAAAATAACATAG
62 CAACAATATCTTGTATCCT-ATAGGAACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTAT
** * ** * * * * *
9666104 A-TTGTTACAATGGACTAAGTTTGACCTAATGGA
126 ACTT-TTATGATTGAAGAAATTTGAACGAGTTGA
* * * ** * *
9666137 AGGATCAACTTTGAAACCAAACAAAATGAATGGGAAAAATGGGTTTTTTGGCAAACAAAAGTAAC
1 AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACAAAAGCAAC
** * * * * * * *
9666202 AATATCAGGTATCCTA-ATGGCCACAAACTATATTGCTTGGTACTTTGTGATAGGAACTTATAAT
66 AATATCTTGTATCCTATA-GG-AACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACT
*
9666266 TTTATGATTGAAGAAATTTGAATGAGTTGA
129 TTTATGATTGAAGAAATTTGAACGAGTTGA
** ** * * *
9666296 AGGACCAACTTTGAAACC-AAGGAAATGAAAAAGAGAAATGTTTTTTTTGGCATACCAAAGCAAC
1 AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACAAAAGCAAC
* * * *
9666360 AACATCTTGTATCACTATAGGAACTATCTATTTTGCTTGGTAATTTATGAAAAGAAATTATACTT
66 AATATCTTGTATC-CTATAGGAACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTT
* * * * * * *
9666425 TTATGATGGAGGAAGTTTGACCAAATAGA
130 TTATGATTGAAGAAATTTGAACGAGTTGA
* *
9666454 AGGACCAACTCTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTATTTTTTTTTGTAAACAAA
1 AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATG------TTTTTTTTGGTAAACAAA
* * * * **
9666519 AGCAATAATATCCTGTATCCTAATAGTAACAAAATATTTTGCTTGGTACTTTGTGAAAAGAACTT
60 AGCAACAATATCTTGTATCCT-ATAGGAACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTT
* * *
9666584 ATACTTTAATGA-TGGAGAAAGTTTTAACGAGTTGA
124 ATACTTTTATGATTGAAGAAA-TTTGAACGAGTTGA
* * * * * * ** * * * *
9666619 AAGACCAATTTTAAAACCAAA-AAAATGAAATGGATAAATGCTTGCTTTAGTAAACTAAAGTAAG
1 AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACAAAAGCAAC
* * * * * * *
9666683 AATATCTTGAATCCCAATAAGAACTATCTATTTTGCTTGGTATTTTGTGAAAAGAACATAGATTT
66 AATATCTTGTAT-CCTATAGGAACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTT
* * * * * *
9666748 TTACGA-TGGAGTAAGTTTGATCTA-ATGAA
130 TTATGATTGAAG-AAATTTGAACGAGTTG-A
* * * * * ** ** *
9666777 AGAACTAACTTTGAAACCAAAAAAAACGAATGGGAGAAATGGGTTTTTTGGTAAACAAAATTAAT
1 AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACAAAAGCAAC
** * * * * * *
9666842 AATATAGTATATGCCAAT-GGTCACAAAT-TATTTTGCTTAGTACTTTGTGAAAAGAACTTATAA
66 AATATCTTGTAT-CCTATAGG-AAC-TATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTATAC
* * * * *
9666905 TTTCT-TGATAGAGGAAGTTTGAATGAGTTTA
128 TTT-TATGATTGAAGAAATTTGAACGAGTTGA
* ****
9666936 AGGACCAACTTTGAAACCAAATAAAAT-AAATGGGA-AAAAAAATTTTTTGGTAAA-AAAAGGCA
1 AGGACCAACTTTGAAACCAAACAAAATGAAA-GGGAGAAATGTTTTTTTTGGTAAACAAAA-GCA
** * * * * * ** * * *
9666998 GGAATATCTTGTATCCCAATGGGAACTATTTGTTTTTCTTTATACTTTGTGAAAAGAACATAAAT
64 ACAATATCTTGTAT-CCTATAGGAACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTATAC
* * *
9667063 TTTTATGA-TGGAGTAAGTTTG-ACTGA-ATGAA
128 TTTTATGATTGAAG-AAATTTGAAC-GAGTTG-A
* * * * ** *
9667094 ATGACCAACTTTGAAACTAAACAAAATGAATGGGA-AAAGTATATTTTTTTAATAAACATAAGCA
1 AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAA-TGT-TTTTTTTGGTAAACAAAAGCA
* ** * * * * *
9667158 ACATTATC-CATATCCCA-ATGGTAACAAACTATTTTGCTTGGTACTTTCTGAAAAGAACTTATT
64 ACAATATCTTGTATCCTATA-GG-AACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTATA
* * * *
9667221 CTTTTATGATGGAGGAAGTTTGAATGAGTTGA
127 CTTTTATGATTGAAGAAATTTGAACGAGTTGA
* * *
9667253 AGGACCAACTTTGAAACCAAACAAAAT-AGAAGGGACAAATGATATTTTTGGT-AACAAA
1 AGGACCAACTTTGAAACCAAACAAAATGA-AAGGGAGAAATGTTTTTTTTGGTAAACAAA
9667311 CAATATTCTA
Statistics
Matches: 1013, Mismatches: 271, Indels: 109
0.73 0.19 0.08
Matches are distributed among these distances:
157 19 0.02
158 359 0.35
159 328 0.32
160 54 0.05
161 4 0.00
162 29 0.03
163 80 0.08
164 37 0.04
165 103 0.10
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (158 bp):
AGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACAAAAGCAAC
AATATCTTGTATCCTATAGGAACTATCTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTT
TATGATTGAAGAAATTTGAACGAGTTGA
Found at i:9666471 original size:317 final size:317
Alignment explanation
Indices: 9665814--9667310 Score: 1428
Period size: 317 Copynumber: 4.7 Consensus size: 317
9665804 TTTATGATGG
* * * ** * *
9665814 AGGACCAACTTTGAAACTAAACAAAAAATGAAAGAGAGTAAT-GTTTTTTTGCATAAACAAAAGT
1 AGGACCAACTTTGAAACCAAAC--AAAATGAATGGGAAAAATGGGTTTTTTG-GTAAACAAAAGT
* * * *
9665878 AACAATATCATGTA-CCCAATGGTGATAAATTATTTTGCTTGGTACTTTGTG-AAAGAACTTATA
63 AACAATATCAGGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATA
* *
9665941 CTTTTATTG-TTGCAGGAAATTTGAACGAGTTGAAGGACCAACTTTAAAACCAAATAAAATGAAA
128 CTTTTA-TGATTG-AGGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAA-AAAATGAAA
* ** * *
9666005 GGGAGAAATGCCTTTTTTTTTTTATAAACAAAAGCAAGAATATCTTGTATCCTAACAGGAACTAT
190 AGGAGAAATG--TTTTTTTTGGTAT--ACAAAAGCAAGAATATCTTGTATCCCAATAGGAACTAT
* * * *
9666070 CTATTTTGCTTGGTATTTTGTGAAAATAACATAGATTGTTACAATGGACTAAGTTTGACCTAATG
251 CTATTTTGCTTGGTATTTTGTGAAAAGAACATAGATTTTTACGATGGAGTAAGTTTGACCTAATG
*
9666135 GA
316 AA
* *
9666137 AGGATCAACTTTGAAACCAAACAAAATGAATGGGAAAAATGGGTTTTTTGGCAAACAAAAGTAAC
1 AGGACCAACTTTGAAACCAAACAAAATGAATGGGAAAAATGGGTTTTTTGGTAAACAAAAGTAAC
* ** * * * *
9666202 AATATCAGGTATCCTAATGGCCACAAACTATATTGCTTGGTACTTTGTGATAGGAACTTATAATT
66 AATATCAGGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTT
* ** *
9666267 TTATGATTGAAGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAGGAAATGAAAAAGAGA
131 TTATGATTGAGGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAAAAAATGAAAAGGAGA
* * * * * *
9666332 AATGTTTTTTTTGGCATACCAAAGCAACAACATCTTGTATCACTATAGGAACTATCTATTTTGCT
196 AATGTTTTTTTTGGTATACAAAAGCAAGAATATCTTGTATCCCAATAGGAACTATCTATTTTGCT
* * * * * * *
9666397 TGGTAATTTATGAAAAGAA-ATTATACTTTTATGATGGAGGAAGTTTGACCAAAT-AGA
261 TGGTATTTTGTGAAAAGAACA-TAGATTTTTACGATGGAGTAAGTTTGACCTAATGA-A
* * * ** *
9666454 AGGACCAACTCTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTATTTTTTTTTGTAAACAAA
1 AGGACCAACTTTGAAACCAAACAAAATGAATGGGAAAAATG------GGTTTTTTGGTAAACAAA
* * ** * * *
9666519 AGCAATAATATCCTGTATCCTAATAGTAACAAAATATTTTGCTTGGTACTTTGTGAAAAGAACTT
60 AGTAACAATATCAGGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTT
* * * * * * *
9666584 ATACTTTAATGATGGA-GAAAGTTTTAACGAGTTGAAAGACCAATTTTAAAACCAAAAAAATGAA
125 ATACTTTTATGATTGAGGAAA-TTTGAATGAGTTGAAGGACCAACTTTGAAACCAAAAAAATGAA
* * * ** * * * * * *
9666648 ATGGATAAATGCTTGCTTTAGTAAACTAAAGTAAGAATATCTTGAATCCCAATAAGAACTATCTA
189 AAGGAGAAATGTTTTTTTTGGTATACAAAAGCAAGAATATCTTGTATCCCAATAGGAACTATCTA
*
9666713 TTTTGCTTGGTATTTTGTGAAAAGAACATAGATTTTTACGATGGAGTAAGTTTGATCTAATGAA
254 TTTTGCTTGGTATTTTGTGAAAAGAACATAGATTTTTACGATGGAGTAAGTTTGACCTAATGAA
* * * * * * *
9666777 AGAACTAACTTTGAAACCAAAAAAAACGAATGGGAGAAATGGGTTTTTTGGTAAACAAAATTAAT
1 AGGACCAACTTTGAAACCAAACAAAATGAATGGGAAAAATGGGTTTTTTGGTAAACAAAAGTAAC
* * * * * *
9666842 AATAT-AGTATATGCCAATGGTCACAAATTATTTTGCTTAGTACTTTGTGAAAAGAACTTATAAT
66 AATATCAG-GTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACT
* * * *
9666906 TTCT-TGATAGAGGAAGTTTGAATGAGTTTAAGGACCAACTTTGAAACCAAATAAAAT-AAATGG
130 TT-TATGATTGAGGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAA-AAAATGAAAAGG
**** * * * * *
9666969 -GAAAAAAAATTTTTTGGTA-AAAAAAGGCAGGAATATCTTGTATCCCAATGGGAACTATTTGTT
193 AG-AAATGTTTTTTTTGGTATACAAAA-GCAAGAATATCTTGTATCCCAATAGGAACTATCTATT
* ** * * *
9667032 TTTCTTTATACTTTGTGAAAAGAACATAAATTTTTATGATGGAGTAAGTTTGA-CTGAATGAA
256 TTGCTTGGTATTTTGTGAAAAGAACATAGATTTTTACGATGGAGTAAGTTTGACCT-AATGAA
* * ** ** * *
9667094 ATGACCAACTTTGAAACTAAACAAAATGAATGGGAAAAGTAT-ATTTTTTTAATAAACATAAGCA
1 AGGACCAACTTTGAAACCAAACAAAATGAATGGGAAAA--ATGGGTTTTTTGGTAAACAAAAGTA
* * *
9667158 ACATTATCCA--TATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTCTGAAAAGAACTTATT
64 ACAATAT-CAGGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATA
* * *
9667221 CTTTTATGATGGAGGAAGTTTGAATGAGTTGAAGGACCAACTTTGAAACCAAACAAAAT-AGAAG
128 CTTTTATGATTGAGGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAA-AAAATGA-AAA
* * *
9667285 GGACAAATGATATTTTTGGTA-ACAAA
191 GGAGAAATGTTTTTTTTGGTATACAAA
9667311 CAATATTCTA
Statistics
Matches: 957, Mismatches: 188, Indels: 63
0.79 0.16 0.05
Matches are distributed among these distances:
316 8 0.01
317 460 0.48
318 49 0.05
319 12 0.01
320 1 0.00
321 53 0.06
322 82 0.09
323 290 0.30
324 2 0.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (317 bp):
AGGACCAACTTTGAAACCAAACAAAATGAATGGGAAAAATGGGTTTTTTGGTAAACAAAAGTAAC
AATATCAGGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTT
TTATGATTGAGGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAAAAAATGAAAAGGAGA
AATGTTTTTTTTGGTATACAAAAGCAAGAATATCTTGTATCCCAATAGGAACTATCTATTTTGCT
TGGTATTTTGTGAAAAGAACATAGATTTTTACGATGGAGTAAGTTTGACCTAATGAA
Found at i:9667053 original size:640 final size:637
Alignment explanation
Indices: 9665814--9667293 Score: 1688
Period size: 640 Copynumber: 2.3 Consensus size: 637
9665804 TTTATGATGG
* * *
9665814 AGGACCAACTTTGAAACTAAACAAAAAATGAAA--G-AGAGTA-ATGTTTTTTTGCATAAACAAA
1 AGGACCAACTCTGAAACCAAAC--AAAATGAAAGGGAAAAGTATAT-TTTTTTTG--TAAACAAA
* * * * *
9665875 AGTAACAATATCATGTA-CCCAATGGTGATAAATTATTTTGCTTGGTACTTTGTG-AAAGAACTT
61 AGCAACAATATCCTGTATCCCAATGGTAACAAAATATTTTGCTTGGTACTTTGTGAAAAGAACTT
* * * *
9665938 ATACTTTTATTGTTGCAGGAAA-TTTGAACGAGTTGAAGGACCAACTTTAAAACCAAATAAAATG
126 ATAC-TTTAATGATGGA-GAAAGTTTGAACGAGTTGAAGGACCAACTTTAAAACCAAACAAAATG
** * * *
9666002 AAAGGGAGAAATGCCTTTTTTTTTTTATAAACAAAAGCAAGAATATCTTGTATCCTAACAGGAAC
189 AAAGGGAGAAATGCC---TTTGCTTTATAAACAAAAGCAAGAATATCTTGAATCCCAACAAGAAC
*
9666067 TATCTATTTTGCTTGGTATTTTGTGAAAATAACATAGATTGTTACAATGGACTAAGTTTGACCTA
251 TATCTATTTTGCTTGGTATTTTGTGAAAAGAACATAGATTGTTACAATGGACTAAGTTTGACCTA
* * * *
9666132 ATGGAAGGATCAACTTTGAAACCAAACAAAATGAATGGGAAAAATGGGTTTTTTGGCAAACAAAA
316 ATGAAAGAATCAACTTTGAAACCAAAAAAAACGAATGGGAAAAATGGGTTTTTTGGCAAACAAAA
* * * *
9666197 GTAACAATATCAGGTATCCTAATGGCCACAAACTATATTGCTTGGTACTTTGTGATAGGAACTTA
381 GTAACAATATCAGATATCCTAATGGCCACAAACTATATTGCTTAGTACTTTGTGAAAAGAACTTA
* *
9666262 TAATTTTATGATTGAAGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAGGAAATGAAAA
446 TAATTTTATGATAGAAGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAGAAAATGAAAA
**** ** *
9666327 AGAGAAATGTTTTTTTTGGCATACCAAAGCAACAACATCTTGTATCACTATAGGAACTATCTATT
511 AGAGAAAAAAATTTTTTGGCATAAAAAAGCAACAACATCTTGTATCACAATAGGAACTATCTATT
* *
9666392 TTGCTTGGTAATTTATGAAAAGAA-ATTATACTTTTATGATGGAGGAAGTTTGACCAAAT-AGA
576 TTGCTTGATAATTTATGAAAAGAACA-TAAACTTTTATGATGGAGGAAGTTTGACCAAATGA-A
*
9666454 AGGACCAACTCTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTATTTTTTTTTGTAAACAAA
1 AGGACCAACTCTGAAACCAAACAAAATGAAAGGGA-AAA-G--TATA-TTTTTTTTGTAAACAAA
* * *
9666519 AGCAATAATATCCTGTATCCTAATAGTAACAAAATATTTTGCTTGGTACTTTGTGAAAAGAACTT
61 AGCAACAATATCCTGTATCCCAATGGTAACAAAATATTTTGCTTGGTACTTTGTGAAAAGAACTT
* * *
9666584 ATACTTTAATGATGGAGAAAGTTTTAACGAGTTGAAAGACCAATTTTAAAACCAAA-AAAATGAA
126 ATACTTTAATGATGGAGAAAGTTTGAACGAGTTGAAGGACCAACTTTAAAACCAAACAAAATGAA
* * * * *
9666648 ATGGATAAATG-C-TTGCTTTAGTAAACTAAAGTAAGAATATCTTGAATCCCAATAAGAACTATC
191 AGGGAGAAATGCCTTTGCTTTA-TAAACAAAAGCAAGAATATCTTGAATCCCAACAAGAACTATC
* * * *
9666711 TATTTTGCTTGGTATTTTGTGAAAAGAACATAGATTTTTACGATGGAGTAAGTTTGATCTAATGA
255 TATTTTGCTTGGTATTTTGTGAAAAGAACATAGATTGTTACAATGGACTAAGTTTGACCTAATGA
* * *
9666776 AAGAA-CTAACTTTGAAACCAAAAAAAACGAATGGGAGAAATGGGTTTTTTGGTAAACAAAATTA
320 AAGAATC-AACTTTGAAACCAAAAAAAACGAATGGGAAAAATGGGTTTTTTGGCAAACAAAAGTA
* * * *
9666840 ATAATAT-AGTATATGCC-AATGGTCACAAATTATTTTGCTTAGTACTTTGTGAAAAGAACTTAT
384 ACAATATCAG-ATAT-CCTAATGGCCACAAACTATATTGCTTAGTACTTTGTGAAAAGAACTTAT
* * * *
9666903 AATTTCT-TGATAGAGGAAGTTTGAATGAGTTTAAGGACCAACTTTGAAACCAAATAAAAT--AA
447 AATTT-TATGATAGAAGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACC-AAGAAAATGAAA
* * * ** * * * *
9666965 ATGGGAAAAAAAATTTTTTGGTA-AAAAAAGGCAGGAATATCTTGTATCCCAATGGGAACTATTT
510 AAGAG-AAAAAAATTTTTTGGCATAAAAAA-GCAACAACATCTTGTATCACAATAGGAACTATCT
* * * * * * * **
9667029 GTTTTTCTTTATACTTTGTGAAAAGAACATAAATTTTTATGATGGAGTAAGTTTGACTGAATGAA
573 ATTTTGCTTGATAATTTATGAAAAGAACATAAACTTTTATGATGGAGGAAGTTTGACCAAATGAA
* * * * ** *
9667094 ATGACCAACTTTGAAACTAAACAAAATGAATGGGAAAAGTATATTTTTTTAATAAACATAAGCAA
1 AGGACCAACTCTGAAACCAAACAAAATGAAAGGGAAAAGTATATTTTTTTTGTAAACAAAAGCAA
* * * * *
9667159 CATTATCC-ATATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTCTGAAAAGAACTTATTCT
66 CAATATCCTGTATCCCAATGGTAACAAAATATTTTGCTTGGTACTTTGTGAAAAGAACTTATACT
* * * *
9667223 TTTATGATGGAGGAAGTTTGAATGAGTTGAAGGACCAACTTTGAAACCAAACAAAAT-AGAAGGG
131 TTAATGATGGAGAAAGTTTGAACGAGTTGAAGGACCAACTTTAAAACCAAACAAAATGA-AAGGG
*
9667287 ACAAATG
195 AGAAATG
9667294 ATATTTTTGG
Statistics
Matches: 710, Mismatches: 106, Indels: 53
0.82 0.12 0.06
Matches are distributed among these distances:
634 95 0.13
635 40 0.06
636 3 0.00
638 10 0.01
639 21 0.03
640 386 0.54
641 11 0.02
642 2 0.00
643 2 0.00
644 43 0.06
645 74 0.10
646 22 0.03
647 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31
Consensus pattern (637 bp):
AGGACCAACTCTGAAACCAAACAAAATGAAAGGGAAAAGTATATTTTTTTTGTAAACAAAAGCAA
CAATATCCTGTATCCCAATGGTAACAAAATATTTTGCTTGGTACTTTGTGAAAAGAACTTATACT
TTAATGATGGAGAAAGTTTGAACGAGTTGAAGGACCAACTTTAAAACCAAACAAAATGAAAGGGA
GAAATGCCTTTGCTTTATAAACAAAAGCAAGAATATCTTGAATCCCAACAAGAACTATCTATTTT
GCTTGGTATTTTGTGAAAAGAACATAGATTGTTACAATGGACTAAGTTTGACCTAATGAAAGAAT
CAACTTTGAAACCAAAAAAAACGAATGGGAAAAATGGGTTTTTTGGCAAACAAAAGTAACAATAT
CAGATATCCTAATGGCCACAAACTATATTGCTTAGTACTTTGTGAAAAGAACTTATAATTTTATG
ATAGAAGAAATTTGAATGAGTTGAAGGACCAACTTTGAAACCAAGAAAATGAAAAAGAGAAAAAA
ATTTTTTGGCATAAAAAAGCAACAACATCTTGTATCACAATAGGAACTATCTATTTTGCTTGATA
ATTTATGAAAAGAACATAAACTTTTATGATGGAGGAAGTTTGACCAAATGAA
Found at i:9667878 original size:157 final size:158
Alignment explanation
Indices: 9667450--9669831 Score: 993
Period size: 159 Copynumber: 15.0 Consensus size: 158
9667440 AAACGTTTTT
* * * * * * *
9667450 TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTTCGTCCATTCGA-TCCAACTTTCTCCATCATAAA
1 TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTC-ATTCAAACTTACTTCATCATAAA
* * * * * * *
9667514 AGTATAAGTTCTTTTTGA-AAAGCAACA-TGCAAAATAGATAATTCCCTTTAGGATACAACATAT
65 AATATAAGTTCTTTCT-ACAAAG-TACAGAGCAAAATAGATAGTTACCATTAGGATACAACATAT
* * *
9667577 TTTTGCTTTGGTTTACCAAAAAAAGCATTAC
128 TATTGCTTTTGTTTACCAAAAAAAGCATTTC
* * * **
9667608 TCTCTTTCATTTTGTTTGGTTTTAAAGTTGGTTCTTCAACTCATTCAAACTTCCTTCATGGTAAA
1 TC-CTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTTCATCATAAA
* * * * * *
9667673 AATATAAGTTCTTTCTACAAAGTATAGAGCAAAATAGTTTGTTACCATTAGAATACAAGATATTG
65 AATATAAGTTCTTTCTACAAAGTACAGAGCAAAATAGATAGTTACCATTAGGATACAACATATTA
**
9667738 TTGCTTTTGTTTACC-AAAAATCCATTTC
130 TTGCTTTTGTTTACCAAAAAAAGCATTTC
* ** * *
9667766 TCCTATTCATTTTGTTCGGTTTCAAAGTT-GTCCTTTCATTTGA-TCAAACTTACTTTATCATAA
1 TCCT-TTCATTTTGTTTGGTTTCAAAGTTGGTCC-TTCAACTCATTCAAACTTACTTCATCATAA
* * * * *
9667829 AAATCTATGTTCATTTC-ACAAATTACCA-AGCAAAATAGGTAGTTTCCATT-GGATACAACATA
64 AAATATAAGTTC-TTTCTACAAAGTA-CAGAGCAAAATAGATAGTTACCATTAGGATACAACATA
*
9667891 TTATTGCTTTTGCTTACCAAAAAAAGCATTTC
127 TTATTGCTTTTGTTTACCAAAAAAAGCATTTC
* ** * *
9667923 TCCTTTTCATTTTGTTTGGTTCCAAAGTTCATCCTTCAACTCAGTCAAACTT--TTGCCATCGT-
1 TCC-TTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTT--CATCATA
* * * ** ** *
9667985 AAAACAT-AG------GT----AGTACCA-AGCAAAATAGTTTTTTACTGTTGGGATACAACATA
63 AAAATATAAGTTCTTTCTACAAAGTA-CAGAGCAAAATAGATAGTTACCATTAGGATACAACATA
* * *
9668038 TTGTTGCTTTCGTTTATCAAAAAAAGCATTTC
127 TTATTGCTTTTGTTTACCAAAAAAAGCATTTC
* * * * * * * * *
9668070 TTGCTTTCATTTTATTTGATTTCAAA-TATGGTCATTCCA-TTAGGTCAAACATACTTCATCTTA
1 -TCCTTTCATTTTGTTTGGTTTCAAAGT-TGGTCCTTCAACTCA-TTCAAACTTACTTCATCATA
* * * ** * *
9668133 AAAATCTATGTTCTTT-TCATAAAGTATC-TTGCAAAATAGATAGTT-CTCATTAGGATATAAGA
63 AAAATATAAGTTCTTTCT-ACAAAGTA-CAGAGCAAAATAGATAGTTAC-CATTAGGATACAACA
* * *
9668195 TATTCTTGCTTTTGTTTACCAAAAAAGGTATTTC
125 TATTATTGCTTTTGTTTACCAAAAAAAGCATTTC
* * ** * * **
9668229 TCCTATTTATTTTGTTTGGTTTCAAAGTTAGTCCTTCAACTTGTCCAAACTT-TTTCCATTGTAA
1 TCCT-TTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTT-CATCATAA
* * * * * * *
9668293 AAGTATAATTTCTTT-TCACAAAGTACCA-AGTAAAATAAATAGTT-TCATAGTAGGAAACAAGA
64 AAATATAAGTTCTTTCT-ACAAAGTA-CAGAGCAAAATAGATAGTTACCAT--TAGGATACAACA
* * * * *
9668355 TATTGTGGCTTTCGTTTATCGAAAAAAGCATTTC
125 TATTATTGCTTTTGTTTACCAAAAAAAGCATTTC
* * * *
9668389 T-TTGATTCATTTTGCTTAGTTTCAAAGTTGGT-CTTGCAACTCGTTCAAACTT-CTTCCATCAT
1 TCCT--TTCATTTTGTTTGGTTTCAAAGTTGGTCCTT-CAACTCATTCAAACTTACTT-CATCAT
* * * * * * *
9668451 AAAAGTATAAAG-TCATTT-TATAAAGTATCA-AGCAAAATA-ATTTGTTATCATTGGGAAACAT
62 AAAAATAT-AAGTTC-TTTCTACAAAGTA-CAGAGCAAAATAGA-TAGTTACCATTAGGATACAA
* * * * *
9668512 GATATTGTGGCTTTTATTTACAAAAAAAAAAAGAAAAAAAAAACCATTTC
123 CATATTATTGCTTTTGTTTAC---CAAAAAAAG-----------CATTTC
* * * * * * * * * *
9668562 TTCCATTCATTTTATTTGGTTTCAAAGTTGGCCCTTCTATTAAGTCAAACTTAGTCCATC-TTAA
1 -TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTTCATCATAAA
* * * ** *
9668626 AATCTATGTTCTTATC-ACAAAGTACCA-AGCAAACTAGATAGTTTTCATTAGGATACAAGATAT
65 AATATAAGTTCTT-TCTACAAAGTA-CAGAGCAAAATAGATAGTTACCATTAGGATACAACATAT
* * * *
9668689 TGTTGCTTTTGCTTACCAAAAAAAAACATGTC
128 TATTGCTTTTGTTTACC-AAAAAAAGCATTTC
* * * * ** * *
9668721 GCCCTATCATTTGGTTTGGTTTCAAAATTCATCCTTCAACTCATTTAAACTT-CTACCATCATAA
1 -TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACT-TCATCATAA
* * * * * *
9668785 AAGTACAAGTTCTTTCCATA-AAAGTACCA-AGCAAAATAGTTTGTTATCATTGGGATA-AAGCA
64 AAATATAAGTTCTTT-C-TACAAAGTA-CAGAGCAAAATAGATAGTTACCATTAGGATACAA-CA
* * ** * *
9668847 TATTACTACTTTCATTTGCCAAAAAAAGTATTTC
125 TATTATTGCTTTTGTTTACCAAAAAAAGCATTTC
* * * * * * * * * *
9668881 TTGCTTTTATTTTGTTTGGTTTTAAAGTTGATCTTTCTATTAAGTCAAACTTA-TTCCATCTTAA
1 -TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTT-CATCATAA
* * * * * * * * *
9668945 AAATCTATA-TTCTTT-TCACAAAGTAACA-CGCAAAATAAATAGGTCCCGTTGGGGTATAACAT
64 AAATATA-AGTTCTTTCT-ACAAAGT-ACAGAGCAAAATAGATAGTTACCATTAGGATACAACAT
* ** *
9669007 ATTGTTGCTTTCATTTACCCAGAAAAAAAAGCATTTA
126 ATTATTGCTTTTGTTTA-CC---AAAAAAAGCATTTC
* *
9669044 TCCTTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTT-TTTCAATCGTAA
1 TCC-TTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTTC-ATCATAA
* * * * * *
9669108 GAGTATAAGTTCTATTC-ATAAAGTACCA-AGCAAAATTGTTTA-TTACCATTGGGATAC-ACGA
64 AAATATAAGTTCT-TTCTACAAAGTA-CAGAGCAAAATAG-ATAGTTACCATTAGGATACAAC-A
* * *
9669169 TATTGTT-TTTTTGTTTTA-CAAAAAAATGC--TAC
125 TATTATTGCTTTTG-TTTACCAAAAAAA-GCATTTC
* * * * * **
9669201 ACCCTTAT-ATTTTGTTTGGTTTCAAAGTTAGTCTTTTAACT--TGTCAAAACTTCCACCATCAT
1 -TCCTT-TCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAT-TC-AAACTTACTTCATCAT
* * * * * ** *
9669263 AAAAGTATAAGTTCTTAAC-ATAAAGTA-ATGAGCAAAATAGTTTGTTGGCATTAGGATAC-GCA
62 AAAAATATAAGTTCTT-TCTACAAAGTACA-GAGCAAAATAGATAGTTACCATTAGGATACAAC-
* *
9669325 ATATTGTTGCTTTT-TTTACCAAAAAAACCATTTC
124 ATATTATTGCTTTTGTTTACCAAAAAAAGCATTTC
* * * *
9669359 TTCCATTT-ATTTTGTTTGGTTTGAATGTTGGTCCTTCAACTCATTCAAACTTCCTACATCATAA
1 -TCC-TTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTTCATCATAA
* * * * * * **
9669423 AATTATAAGTTCTTT-AATAAAGTACCA-AGCAAAATAGTTTGTTACCATTAGGATATATGATAT
64 AAATATAAGTTCTTTCTACAAAGTA-CAGAGCAAAATAGATAGTTACCATTAGGATACAACATAT
* * * *
9669486 T-GTGATTTTTGTTTACAAAAAAAAAAAATCATTTC
128 TATTG-CTTTTGTTTAC----CAAAAAAAGCATTTC
* * * * * *
9669521 T-CTAATTCATTTTGTTTGGTTTTAAAGTTGGACCATCCAA-T-AGGTCAAACTTAGTCCATC-T
1 TCCT--TTCATTTTGTTTGGTTTCAAAGTTGGTCC-TTCAACTCA-TTCAAACTTACTTCATCAT
* * * ** * *
9669582 ATAAAATCTAAGTTTTTTTTACAAAGTACCA-AGCAAAATAGATAGTT-CTTGTTGGGATACAAT
62 A-AAAATATAAGTTCTTTCTACAAAGTA-CAGAGCAAAATAGATAGTTAC-CATTAGGATACAAC
* * **
9669645 ATATTATTACTTTTGTTGACCAAAAAAAGTGTTTC
124 ATATTATTGCTTTTGTTTACCAAAAAAAGCATTTC
* * * * * ** * * *
9669680 TTCCTTTCATTTTGTTTAGTTTCAAAATTGGTGCTTCCATTCGGTCCAACTTTCTTTATCATAAA
1 -TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTTCATCATAAA
* * * * * * * * *
9669745 AGTACCAA-TTCTTTC-ATTAAAGCACCA-AGAAAAATAGATAGTTCCCTTTAAGATACAAGATA
65 AATA-TAAGTTCTTTCTA-CAAAGTA-CAGAGCAAAATAGATAGTTACCATTAGGATACAACATA
*
9669807 TTGTTG-TTTTGGTTTACCAAAAAAA
127 TTATTGCTTTT-GTTTACCAAAAAAA
9669832 TCCCTTTCAT
Statistics
Matches: 1695, Mismatches: 385, Indels: 287
0.72 0.16 0.12
Matches are distributed among these distances:
146 25 0.01
147 79 0.05
148 7 0.00
149 3 0.00
154 1 0.00
155 2 0.00
156 41 0.02
157 252 0.15
158 168 0.10
159 478 0.28
160 211 0.12
161 66 0.04
162 82 0.05
163 155 0.09
164 5 0.00
170 7 0.00
171 4 0.00
172 59 0.03
173 45 0.03
174 5 0.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (158 bp):
TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTACTTCATCATAAAA
ATATAAGTTCTTTCTACAAAGTACAGAGCAAAATAGATAGTTACCATTAGGATACAACATATTAT
TGCTTTTGTTTACCAAAAAAAGCATTTC
Found at i:9668243 original size:306 final size:303
Alignment explanation
Indices: 9667700--9668294 Score: 725
Period size: 306 Copynumber: 2.0 Consensus size: 303
9667690 CAAAGTATAG
* * * *
9667700 AGCAAAATAGTTTGTTACCATTAGAATACAAGATATTGTTGCTTTTGTTTACCAAAAATCCATTT
1 AGCAAAATAGTTTGTTACCATTAGAATACAACATATTGTTGCTTTCGTTTACAAAAAAACCATTT
* * * * * * *
9667765 CTCCTATTCATTTTGTTCGGTTTCAAAGTTGTCCTTTCATTTGATCAAACTTACTTTATCATAAA
66 CTCCTATTCATTTTATTCGATTTCAAAGTTGTCATTCCATTAGATCAAACATACTTCATCATAAA
* *
9667830 AATCTATGTTCATTTCACAAATTACCAAGCAAAATAGGTAGTTTCCATTGGATACAACATATTAT
131 AATCTATGTTCATTTCACAAAGTACCAAGCAAAATAGATAGTTTCCATTGGATACAACATATTAT
9667895 TGCTTTTGCTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTCCAAAGTTCA-TCCTT
196 TGCTTTTGCTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTCCAAAGTT-AGTCCTT
9667959 CAACTCAGT-CAAACTTTTGCCATCGTAAAACATAGGTAGTACCA
260 CAACT-AGTCCAAACTTTTGCCATCGTAAAACATAGGTAGTACCA
* ** * * *
9668003 AGCAAAATAGTTTTTTACTGTTGGGATACAACATATTGTTGCTTTCGTTTATCAAAAAAAGCATT
1 AGCAAAATAGTTTGTTACCATTAGAATACAACATATTGTTGCTTTCGTTTA-CAAAAAAACCATT
* * * *
9668068 TCTTGCT-TTCATTTTATTTGATTTCAAA-TATGGTCATTCCATTAGGTCAAACATACTTCATCT
65 TC-TCCTATTCATTTTATTCGATTTCAAAGT-T-GTCATTCCATTAGATCAAACATACTTCATCA
* * * ** * *
9668131 TAAAAATCTATGTTCTTTTCATAAAGTATCTTGCAAAATAGATAG-TTCTCATTAGGATATAAGA
127 TAAAAATCTATGTTCATTTCACAAAGTACCAAGCAAAATAGATAGTTTC-CATT-GGATACAACA
* * * * *
9668195 TATTCTTGCTTTTGTTTACCAAAAAAGGTATTTCTCCTATTT-ATTTTGTTTGGTTTCAAAGTTA
190 TATTATTGCTTTTGCTTACCAAAAAAAGCATTTCTCCT-TTTCATTTTGTTTGGTTCCAAAGTTA
* * *
9668259 GTCCTTCAACTTGTCCAAACTTTTTCCATTGTAAAA
254 GTCCTTCAACTAGTCCAAACTTTTGCCATCGTAAAA
9668295 GTATAATTTC
Statistics
Matches: 245, Mismatches: 38, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
303 45 0.18
304 34 0.14
305 72 0.29
306 91 0.37
307 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.41
Consensus pattern (303 bp):
AGCAAAATAGTTTGTTACCATTAGAATACAACATATTGTTGCTTTCGTTTACAAAAAAACCATTT
CTCCTATTCATTTTATTCGATTTCAAAGTTGTCATTCCATTAGATCAAACATACTTCATCATAAA
AATCTATGTTCATTTCACAAAGTACCAAGCAAAATAGATAGTTTCCATTGGATACAACATATTAT
TGCTTTTGCTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTCCAAAGTTAGTCCTTC
AACTAGTCCAAACTTTTGCCATCGTAAAACATAGGTAGTACCA
Found at i:9668980 original size:492 final size:491
Alignment explanation
Indices: 9668056--9668982 Score: 1019
Period size: 492 Copynumber: 1.9 Consensus size: 491
9668046 TTCGTTTATC
* * * * *
9668056 AAAAAAAGCATTTCTTGCTTTCATTTTATTTGATTTCAAATATGGTCATTCCATTAGGTCAAACA
1 AAAAAAACCATTTCTTCCATTCATTTTATTTGATTTCAAATATGGCCATTCCATTAAGTCAAACA
* * * * **
9668121 TACTTCATCTTAAAAATCTATGTTCTTTTCATAAAGTATCTTGCAAAATAGATAGTTCTCATTAG
66 TACTCCATCTTAAAAATCTATGTTCTTATCACAAAGTACCAAGCAAAATAGATAGTTCTCATTAG
* * *** * * * *
9668186 GATATAAGATATTCTTGCTTTTGTTTACCAAAAAAGGTATTTCTCCTATTTATTTTGTTTGGTTT
131 GATACAAGATATTCTTGCTTTTGCTTACCAAAAAAAACATGTCCCCTATTCATTTGGTTTGGTTT
* ** * * ** * * * *
9668251 CAAAGTTAGTCCTTCAACTTGTCCAAACTTTTTCCATTGTAAAAGTATAATTTCTTTTCACAAAG
196 CAAAATTAGTCCTTCAACTCATCCAAACTTCTACCATCATAAAAGTACAAGTTCTTTCCAAAAAG
* * * * * *
9668316 TACCAAGTAAAATAAATAGTTTCATAGTAGGAAACAAGATATTGTGGCTTTCGTTTATCGAAAAA
261 TACCAAGCAAAATAAATAGTTTCATA-TAGGAAACAAGATATTCTGACTTTCATTTACCAAAAAA
* * *
9668381 AGCATTTCTTTGATTCATTTTGCTTAGTTTCAAAGTTGGTCTTGCAACTCGTTCAAACTTCTTCC
325 AGCATTTCTTTGATTCATTTTGCTTAGTTTCAAAGTTGATCTTGCAACTAGTTCAAACTTATTCC
* * *
9668446 ATCATAAAAGTATAAAGTCATTTTATAAAGTATCAAGCAAAATAATTTGTTATCATTGGGAAACA
390 ATCATAAAAATATAAAGTCATTTTACAAAGTAACAAGCAAAATAATTTGTTATCATTGGGAAACA
9668511 TGATATTGTGGCTTTTATTTACAAAAAAAAAAAGAAA
455 TGATATTGTGGCTTTTATTTACAAAAAAAAAAAGAAA
* * *
9668548 AAAAAAACCATTTCTTCCATTCATTTTATTTGGTTTCAAAGT-TGGCCCTTCTATTAAGTCAAAC
1 AAAAAAACCATTTCTTCCATTCATTTTATTTGATTTCAAA-TATGGCCATTCCATTAAGTCAAAC
* * * *
9668612 TTAGTCCATCTT-AAAATCTATGTTCTTATCACAAAGTACCAAGCAAACTAGATAGTTTTCATTA
65 ATACTCCATCTTAAAAATCTATGTTCTTATCACAAAGTACCAAGCAAAATAGATAGTTCTCATTA
*
9668676 GGATACAAGATATTGTTGCTTTTGCTTACCAAAAAAAAACATGTCGCCCTA-TCATTTGGTTTGG
130 GGATACAAGATATTCTTGCTTTTGCTTACC-AAAAAAAACATGTC-CCCTATTCATTTGGTTTGG
**
9668740 TTTCAAAATTCA-TCCTTCAACTCATTTAAACTTCTACCATCATAAAAGTACAAGTTCTTTCCAT
193 TTTCAAAATT-AGTCCTTCAACTCATCCAAACTTCTACCATCATAAAAGTACAAGTTCTTTCCA-
** * * * *
9668804 AAAAGTACCAAGCAAAATAGTTTGTTATCAT-TGGGATA-AAGCATATTACT-ACTTTCATTTGC
256 AAAAGTACCAAGCAAAATAAATAGTT-TCATATAGGAAACAAG-ATATT-CTGACTTTCATTTAC
* * * * * * * * *
9668866 CAAAAAAAGTATTTC-TTGCTTTTATTTTGTTTGGTTTTAAAGTTGATCTTTCTATTAAG-TCAA
318 CAAAAAAAGCATTTCTTTG-ATTCATTTTGCTTAGTTTCAAAGTTGATCTTGCAACT-AGTTCAA
* * * * *
9668929 ACTTATTCCATCTTAAAAATCTATATTC-TTTTCACAAAGTAACACGCAAAATAA
381 ACTTATTCCATCATAAAAATATAAAGTCATTTT-ACAAAGTAACAAGCAAAATAA
9668983 ATAGGTCCCG
Statistics
Matches: 351, Mismatches: 73, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
491 82 0.23
492 236 0.67
493 29 0.08
494 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (491 bp):
AAAAAAACCATTTCTTCCATTCATTTTATTTGATTTCAAATATGGCCATTCCATTAAGTCAAACA
TACTCCATCTTAAAAATCTATGTTCTTATCACAAAGTACCAAGCAAAATAGATAGTTCTCATTAG
GATACAAGATATTCTTGCTTTTGCTTACCAAAAAAAACATGTCCCCTATTCATTTGGTTTGGTTT
CAAAATTAGTCCTTCAACTCATCCAAACTTCTACCATCATAAAAGTACAAGTTCTTTCCAAAAAG
TACCAAGCAAAATAAATAGTTTCATATAGGAAACAAGATATTCTGACTTTCATTTACCAAAAAAA
GCATTTCTTTGATTCATTTTGCTTAGTTTCAAAGTTGATCTTGCAACTAGTTCAAACTTATTCCA
TCATAAAAATATAAAGTCATTTTACAAAGTAACAAGCAAAATAATTTGTTATCATTGGGAAACAT
GATATTGTGGCTTTTATTTACAAAAAAAAAAAGAAA
Found at i:9669143 original size:163 final size:159
Alignment explanation
Indices: 9668548--9669458 Score: 415
Period size: 157 Copynumber: 5.7 Consensus size: 159
9668538 AAAAAAGAAA
* * * * ** * * * *
9668548 AAAAAAACCATTTCTTCC-ATTCATTTTATTTGGTTTCAAAGTTGGCCCTTCTATTAAGTCAAAC
1 AAAAAAAGCATTTCATCCTTTTCATTTTGTTTGGTTTCAAAGTTGATCCTTCAACTCATTCAAAC
* * * * * * * * ** *
9668612 TTAGTCCATCTTAAAA-TCTATGTTCTTATCACAAAGTACCAAGCAAACTAGATAGTTTTCATTA
66 TTATTCCATCATAAAAGTATAAGTTCTT-TCATAAAGTACCAAGCAAAATAAATAGGTACCATTG
** * * *
9668676 GGATACAAG-ATATTGTTGCTTTTGC-TTACCA
130 GGATA-AAGCATATTACTAC-TTT-CATTTCCC
* * * * * * * * *
9668707 AAAAAAAACATGTC-GCCCTATCATTTGGTTTGGTTTCAAAATTCATCCTTCAACTCATTTAAAC
1 AAAAAAAGCATTTCATCCTTTTCATTTTGTTTGGTTTCAAAGTTGATCCTTCAACTCATTCAAAC
* * * ** * * *
9668771 TTCTACCATCATAAAAGTACAAGTTCTTTCCATAAAAGTACCAAGCAAAATAGTTTGTTATCATT
66 TTATTCCATCATAAAAGTATAAGTTCTTT-CAT-AAAGTACCAAGCAAAATAAATAGGTACCATT
*
9668836 GGGATAAAGCATATTACTACTTTCATTTGCC
129 GGGATAAAGCATATTACTACTTTCATTTCCC
* * * * * * * * *
9668867 AAAAAAAGTATTTCTTGCTTTT-ATTTTGTTTGGTTTTAAAGTTGATCTTTCTATTAAGTCAAAC
1 AAAAAAAGCATTTCATCCTTTTCATTTTGTTTGGTTTCAAAGTTGATCCTTCAACTCATTCAAAC
* * * * * * * *
9668931 TTATTCCATCTTAAAAATCTATA-TTCTTTTCACAAAGTAACACGCAAAATAAATAGGTCCCGTT
66 TTATTCCATCATAAAAGTATA-AGTTC-TTTCATAAAGTACCAAGCAAAATAAATAGGTACCATT
* ** *
9668995 GGGGTATAA-CATATTGTTGCTTTCATTTACCC
129 GGGATA-AAGCATATTACTACTTTCATTT-CCC
*
9669027 AGAAAAAAAAGCATTT-ATCCTTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCA
1 ---AAAAAAAGCATTTCATCCTTTTCATTTTGTTTGGTTTCAAAGTTGATCCTTCAACTCATTCA
* * * * *** *
9669091 AACTTTTTCAATCGTAAGAGTATAAGTTCTATTCATAAAGTACCAAGCAAAATTGTTTA-TTACC
63 AACTTATTCCATCATAAAAGTATAAGTTCT-TTCATAAAGTACCAAGCAAAA-TAAATAGGTACC
* * ** ** **
9669155 ATTGGGATACA-CGATATT-GTTTTTTTGTTTTAC
126 ATTGGGATAAAGC-ATATTACTACTTTCATTTCCC
* * * * *
9669188 AAAAAAATGC--TACACCCTTAT-ATTTTGTTTGGTTTCAAAGTT-AGTCTTTTAACT--TGTCA
1 AAAAAAA-GCATTTCATCCTTTTCATTTTGTTTGGTTTCAAAGTTGA-TCCTTCAACTCAT-TC-
*** * *** ** * * **
9669247 AAACTTCCACCATCATAAAAGTATAAGTTCTTAACATAAAGTAATGAGCAAAATAGTTTGTTGGC
62 AAACTTATTCCATCATAAAAGTATAAGTTCTT-TCATAAAGTACCAAGCAAAATAAATAGGTACC
* * ** * * *
9669312 ATTAGGAT-ACGCAATATTGTTGCTTT-TTTTACC
126 ATTGGGATAAAGC-ATATTACTACTTTCATTTCCC
* * * * * *
9669345 AAAAAAACCATTTCTTCCATTT-ATTTTGTTTGGTTTGAATGTTGGTCCTTCAACTCATTCAAAC
1 AAAAAAAGCATTTCATCCTTTTCATTTTGTTTGGTTTCAAAGTTGATCCTTCAACTCATTCAAAC
** * * *
9669409 TTCCTACATCATAAAATTATAAGTTCTTTAATAAAGTACCAAGCAAAATA
66 TTATTCCATCATAAAAGTATAAGTTCTTTCATAAAGTACCAAGCAAAATA
9669459 GTTTGTTACC
Statistics
Matches: 562, Mismatches: 157, Indels: 68
0.71 0.20 0.09
Matches are distributed among these distances:
155 1 0.00
156 7 0.01
157 115 0.20
158 81 0.14
159 106 0.19
160 87 0.15
161 47 0.08
162 17 0.03
163 98 0.17
164 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (159 bp):
AAAAAAAGCATTTCATCCTTTTCATTTTGTTTGGTTTCAAAGTTGATCCTTCAACTCATTCAAAC
TTATTCCATCATAAAAGTATAAGTTCTTTCATAAAGTACCAAGCAAAATAAATAGGTACCATTGG
GATAAAGCATATTACTACTTTCATTTCCC
Found at i:9669221 original size:320 final size:313
Alignment explanation
Indices: 9668570--9669508 Score: 833
Period size: 320 Copynumber: 3.0 Consensus size: 313
9668560 TCTTCCATTC
* ** * * *
9668570 ATTTTATTTGGTTTCAAAGTTGGCCCTTCTATTAAGTCAAACTTAGTCCATCTT-AAAATCTATG
1 ATTTTGTTTGGTTTCAAAGTTGATCTTTCTATTAAGTCAAACTTACTCCATCTTAAAAATCTATA
* * ** * * *
9668634 TTCTTATCACAAAGTACCAAGCAAACTAGATAGTTTTCATTAGGATACAAGATATTGTTGCTTT-
66 TTCTTATCACAAAGTAAC-AGCAAAATAGATAGTTCCCATT-GGGTATAACATATTGTTGCTTTA
* ** * * * * **
9668698 TGCTTACCAAAAAAAAACATGTCGCCCTATCATTTGGTTTGGTTTCAAAATTCATCCTTCAACTC
129 T--TTACCAAAAAAAAACATTTATCCATTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTC
* * * *
9668763 ATTTAAACTTCTACCATCATAAAAGTACAAGTTCTTTCCATAAAAGTACCAAGCAAAATAGTTTG
192 ATTCAAACTTCTTCAATCATAAAAGTATAAGTTCTTT-CAT-AAAGTACCAAGCAAAATAGTTTG
* * * ** ** * * *** *
9668828 TTATCATTGGGATAAAGCATATTACTACTTTCATTTGCCAAAAAAAGTATTTCTTGCTTTT
255 TTACCATTGGGATAAAG-ATATT-GTATTTTTGTTTTACAAAAAAAGTACTACACCCTTAT
* *
9668889 ATTTTGTTTGGTTTTAAAGTTGATCTTTCTATTAAGTCAAACTTATTCCATCTTAAAAATCTATA
1 ATTTTGTTTGGTTTCAAAGTTGATCTTTCTATTAAGTCAAACTTACTCCATCTTAAAAATCTATA
* * * *
9668954 TTCTTTTCACAAAGTAACACGCAAAATAAATAGGTCCCGTTGGGGTATAACATATTGTTGCTTTC
66 TTCTTATCACAAAGTAACA-GCAAAATAGATAGTTCCCATT-GGGTATAACATATTGTTGCTTT-
*
9669019 ATTTACCCAGAAAAAAAAGCATTTATCCTTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAAC
128 ATTTA-CCA-AAAAAAAA-CATTTATCCATTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAAC
* * * *
9669084 TCATTCAAACTTTTTCAATCGTAAGAGTATAAGTTCTATTCATAAAGTACCAAGCAAAATTGTTT
190 TCATTCAAACTTCTTCAATCATAAAAGTATAAGTTCT-TTCATAAAGTACCAAGCAAAATAGTTT
* * * *
9669149 ATTACCATTGGGATACACGATATTGTTTTTTTGTTTTACAAAAAAA-TGCTACACCCTTAT
254 GTTACCATTGGGATA-AAGATATTGTATTTTTGTTTTACAAAAAAAGTACTACACCCTTAT
* * * * *
9669209 ATTTTGTTTGGTTTCAAAGTT-AGTCTTT-TAACTT--GTCAAAACTTCCACCATCATAAAAGTA
1 ATTTTGTTTGGTTTCAAAGTTGA-TCTTTCT-A-TTAAGTC-AAACTTACTCCATCTTAAAAATC
* * * * * ** * *
9669270 TA-AGTTCTTAACATAAAGTAATGAGCAAAATAGTTTGTTGGCATTAGG-ATACGCAATATTGTT
62 TATA-TTCTTATCACAAAGTAA-CAGCAAAATAGATAGTTCCCATTGGGTATA-AC-ATATTGTT
* * * * *
9669333 GCTTTTTTTACC-AAAAAAACCATTTCTTCCATTT-ATTTTGTTTGGTTTGAATGTTGGTCCTTC
123 GCTTTATTTACCAAAAAAAAACATTT-ATCCATTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTC
* * *
9669396 AACTCATTCAAACTTCCT-ACATCATAAAATTATAAGTTCTTTAATAAAGTACCAAGCAAAATAG
187 AACTCATTCAAACTTCTTCA-ATCATAAAAGTATAAGTTCTTTCATAAAGTACCAAGCAAAATAG
* *
9669460 TTTGTTACCATTAGGATATATGATATTGTGATTTTTG-TTTACAAAAAAA
251 TTTGTTACCATTGGGATA-AAGATATTGT-ATTTTTGTTTTACAAAAAAA
9669509 AAAAATCATT
Statistics
Matches: 509, Mismatches: 91, Indels: 45
0.79 0.14 0.07
Matches are distributed among these distances:
314 60 0.12
315 71 0.14
316 13 0.03
318 5 0.01
319 62 0.12
320 155 0.30
321 21 0.04
322 48 0.09
323 72 0.14
324 2 0.00
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (313 bp):
ATTTTGTTTGGTTTCAAAGTTGATCTTTCTATTAAGTCAAACTTACTCCATCTTAAAAATCTATA
TTCTTATCACAAAGTAACAGCAAAATAGATAGTTCCCATTGGGTATAACATATTGTTGCTTTATT
TACCAAAAAAAAACATTTATCCATTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTC
AAACTTCTTCAATCATAAAAGTATAAGTTCTTTCATAAAGTACCAAGCAAAATAGTTTGTTACCA
TTGGGATAAAGATATTGTATTTTTGTTTTACAAAAAAAGTACTACACCCTTAT
Found at i:9670348 original size:159 final size:159
Alignment explanation
Indices: 9669889--9672397 Score: 1489
Period size: 159 Copynumber: 15.8 Consensus size: 159
9669879 TATTTTTTAT
* * ** * * * *
9669889 AAAGTA-CATAGCAAAATAGTTTGTTAGCATTGGGATATATGGTATTGTTGCTTTTGTTCACC-A
1 AAAGTACCA-AGCAAAATAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAA
* * * * * *
9669952 AAAAATCTATTTCTCTCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAATTAGATCAAACTT
65 AAAAAGC-ATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTT
** * * * * *
9670017 AGTGCATCTTTAAAATCTAAGTTATTTTCAC
129 CCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * * ** * *
9670048 AAAGTACAAAGCAAAATGGATAGTTTTTTTTTGGATACAAGATATTGTTGCTTTTTTTTACCAAA
1 AAAGTACCAAGCAAAATAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAAA
** * * * *** *** *
9670113 AAAAATATTTCACCCTTTTATTTTGTTTGCTTTCAAAGTTGGAGGTTCCTTTCGGTT-GAACTTC
66 AAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTC-GTTCAAACTTC
* * * **
9670177 CTCTATCATAAAAATATAAATTCTTTTTGC
130 CTCCATCGTAAAAATATAAGTTCTTTTCAC
* * *
9670207 AAAGCACCAAGCAAAATAGATAGTTCTCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAA
1 AAAGTACCAAGCAAAATAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAAA
* * * * * * *
9670272 AAAAGTATTTCTCCCTTTCATTTTGTTTGGTTTTAATGTTGATCCTTCAACTCGTACAAACCTCT
66 AAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTCC
* * * *
9670337 TCCATTGTAAAAGTATAAGTTCCTATT-AG
131 TCCATCGTAAAAATATAAGTT-CTTTTCAC
* * * * * * *
9670366 AAAGTACAAAGCAAAATGGTTTGTAAC-CATTGGGATTCACA-ATATTGTTGCTTTTGTTTACTA
1 AAAGTACCAAGCAAAATAGATAGT-TCTCATTGGGATACA-AGATATTGTTGCTTTTGTTTACCA
*** * * * * * * * * * ** *
9670429 AAAATTCCATTTCTCTCATTCATTTTATTTGATTTTAAAATTGGTCTTTCCATTCAATCAAAAGT
64 AAAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTC-AAACT
* * * * * *
9670494 TACTCCATCGTAATAATCTATGTTTTTTTTAC
128 TCCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * * * * * * **
9670526 TAAGTACTAAGCAAAATAGATAATTCCCATTGGGATATAACATATTATTGCTTTCATTTACCAAA
1 AAAGTACCAAGCAAAATAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAAA
* * * * * * * * **
9670591 AAAA-AATTTCTCCCATTCATTTTATTTGATTTTAAAGTTGGTCCTTCCACTAGGTCAAACTTAG
66 AAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTCC
* * * * * **
9670655 TCCATCTTTATAATCTATGCACTTTTCAC
131 TCCATCGTAAAAATATAAGTTCTTTTCAC
** * ** * *
9670684 AAAAGTACCAAGCAATCTAGATA-TTTTCCATTAAGATACAAGATATTGTTGCTTTTGTTTTCTG
1 -AAAGTACCAAGCAAAATAGATAGTTCT-CATTGGGATACAAGATATTGTTGCTTTTGTTTAC-C
** * * * ** *
9670748 AAAAAAA-CATTTCTCTTTTTTATTTTGCTTGCTTTCAAAGTTGGTATTTTAACTCGTTCAAACT
63 AAAAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACT
* *
9670812 TCCTCCATCGTAAAAGTATAATTTCTTTTCAC
128 TCCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * * * * * *
9670844 AAAGTATCAAACAAAATTGATAGTTCTTATTGGGTTA-AAGATATCGTTGCTTTCGTTTACCAAA
1 AAAGTACCAAGCAAAATAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAAA
* * * *
9670908 AAAA--ATTTTCTCCCATTT-TTTTTGTTTGGCTTCAATA-TTGGTTCTTCAACTCATTCAAACT
66 AAAAGCA-TTTCTCCC-TTTCATTTTGTTTGGTTTCAA-AGTTGGTCCTTCAACTCGTTCAAACT
* * * * *
9670969 TTCACTATCCTAAAAGTATAAGTTCTTTTCAC
128 TCCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * * * * * * * *
9671001 AAAGTACCAAGAAAAATAGTTTGTTGC-CATTGGGATACATGATATTATGGGGTTTCGTTTACTA
1 AAAGTACCAAGCAAAATAGATAGTT-CTCATTGGGATACAAGATATTGT-TGCTTTTGTTTACCA
* * * ** * * * * *
9671065 AAAAAACCATTTCTACCATTCATTTTAATTGGTTTCAAAGTTGATCCTTCCATTAGGTCAAACTT
64 AAAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTT
** * * * *
9671130 AGTCCAT-TTTAAAATCTATGTTCTTTTCAC
129 CCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * * * * * * *
9671160 AAAATACCAAGCAAACTAGATCGTTGT-AGTTAGGATACAAGATATTGTTGCTTTTGCTCA-CGA
1 AAAGTACCAAGCAAAATAGATAGTTCTCA-TTGGGATACAAGATATTGTTGCTTTTGTTTACCAA
* * * ** * ** * * *
9671223 AAAAAGCATGTCACCTTTTCATTTTGTTTGGTTTCAAAGTTCATCCTTTAACTTATTTATACTTT
65 AAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTC
* * *
9671288 CACCATCGTAAAAGTAT-AGTTTTTTTTTTTCAC
130 CTCCATCGTAAAAATATAAG----TTCTTTTCAC
* * * * * *
9671321 AAAGTACCAAGCAAAATAGTTTA-TTAC-AATTGGGAAACAACATATTATTGCTTTTGTTTAACA
1 AAAGTACCAAGCAAAATAG-ATAGTT-CTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCA
** * * * * * * *
9671384 AAAAAAGCATTTCTTGCTTTCATTTTGTTTGGTTTTAATGTGGGTCCTTCCATTAGGTCAAACTT
64 AAAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTT
* * * * * *
9671449 GCGCCATCTTAAAAATCTATGTTCTTTTCCC
129 CCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * * *
9671480 AAAGTACCATGCAAAATAGATAGTT-TCCATTAGGATATAAGATATTCTTGCTTTTGTTTACCAA
1 AAAGTACCAAGCAAAATAGATAGTTCT-CATTGGGATACAAGATATTGTTGCTTTTGTTTACCAA
* * * * ** *
9671544 AAAAAGCATTTCTTCATTTCATTTTGTTTTGTTTCAAAGTTGGTTCTTCAACTTATTTAAACTTC
65 AAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTC
* * * *
9671609 CACCATCGTAAAACTATAATTTCTTTTCAA
130 CTCCATCGTAAAAATATAAGTTCTTTTCAC
* * *
9671639 AAAGTA-CAAGGCAAAATAGA-ATGTT-TCTATTGGGATGCAAGATATTGTTACTTCTGTTTACC
1 AAAGTACCAA-GCAAAATAGATA-GTTCTC-ATTGGGATACAAGATATTGTTGCTTTTGTTTACC
* ** * * *
9671701 AAAAAAAGCA---CGCCCACTCATTTTGTTTGGTTTAAAAGTTTGTCCTTCAACTTGTTCAAACT
63 AAAAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACT
* *
9671763 TCCTCCATCATAAAAGTATAAGTTCTTTTCAC
128 TCCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * * * *
9671795 AAAGTACCAAGCAAAATAGTTTGTTAC-CATTAGGG-TACAAGATATTG-TGCCCTTTGTTAAGC
1 AAAGTACCAAGCAAAATAGATAGTT-CTCATT-GGGATACAAGATATTGTTG-CTTTTGTTTACC
** ** * * * * * ***
9671857 AAAAAACCCATTTCTCTTTTTCATTTTATTTGGTTTCAAAGTTGGTTCTTCCATTAGGTT-GGCC
63 AAAAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACT-CGTTCAAAC
** ** * * **
9671921 TTAGTCCATTTTAAAACT-TAGGTAGTTTTCAC
127 TTCCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * ** ** * * *
9671953 AAAGTACCAAGCGAACTAGATAGTTCTTGTCAGGATACGAGATATTATTGCTTTTGCTTACCAAA
1 AAAGTACCAAGCAAAATAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAAA
* * * * * * * ** *
9672018 AAAAGCTTTTCACCATTTGATTTTGTTTAGTTTCAAAGTT-GTCTTTGAACTTATTCAAACTTTC
66 AAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTCC
* * * *
9672082 ACCATCAG-AAAAATGTAGGTTCTTTTCATA
131 TCCATC-GTAAAAATATAAGTTCTTTTCA-C
** * * * * * *
9672112 AAAACACCAAG-AAAATAGTTTGTTAC-CATTGGTATACAACATATTGTTGCTTTCGTTTACAAA
1 AAAGTACCAAGCAAAATAGATAGTT-CTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAA
** * * * *
9672175 AAAAAGCATTTCTTGCTTTTATTTTGTTTAGTTTCAAAGTTGGTCCTTTCAA-TAGGTCAAACTT
65 AAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCC-TTCAACTCGTTCAAACTT
** * *
9672239 ATTCCATCTTAAAAATATATGTTCTTTTCAC
129 CCTCCATCGTAAAAATATAAGTTCTTTTCAC
* * ** * * *
9672270 AAAGTACCATGAAAAATAGATAAATC-CTATTAGGATATAAGATATTGTTG-TTTTCATTTACCA
1 AAAGTACCAAGCAAAATAGATAGTTCTC-ATTGGGATACAAGATATTGTTGCTTTT-GTTTACCA
** * * * * * * * * * *
9672333 AAAGCATCATATCTCCCTTTTATTCTATTTAGTTTCAAAGTTAGTCTTTCAACTTGTTGAAACTT
64 AAAAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTT
9672398 TCTCAAACAT
Statistics
Matches: 1763, Mismatches: 519, Indels: 136
0.73 0.21 0.06
Matches are distributed among these distances:
155 1 0.00
156 119 0.07
157 181 0.10
158 269 0.15
159 868 0.49
160 207 0.12
161 54 0.03
162 63 0.04
163 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.40
Consensus pattern (159 bp):
AAAGTACCAAGCAAAATAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAAA
AAAAGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTCC
TCCATCGTAAAAATATAAGTTCTTTTCAC
Found at i:9671467 original size:320 final size:320
Alignment explanation
Indices: 9670951--9671635 Score: 783
Period size: 320 Copynumber: 2.1 Consensus size: 320
9670941 AATATTGGTT
* * * * * * *
9670951 CTTCAACTCATTCAAACTTTCACTATCCTAAAAGTATAAGTTC---TTTTCACAAAGTACCAAGA
1 CTTCAACTTATTTAAACTTCCACCATCGTAAAACTATAATTTCTTTTTTTCACAAAGTACCAAGA
* * * * ** *
9671013 AAAATAGTTTGTTGCCATTGGGATACATGATATTATGGGGTTTCGTTTACTAAAAAAACCATTTC
66 AAAATAGTTTATTACAATTGGGAAACAACATATTATGGGCTTTCGTTTACTAAAAAAACCATTTC
* * *
9671078 TACCATTCATTTTAATTGGTTTCAAAGTTGATCCTTCCATTAGGTCAAACTTAGTCCATTTTAAA
131 TACCATTCATTTTAATTGGTTTCAAAGTGGATCCTTCCATTAGGTCAAACTTAGGCCATTTAAAA
* * *
9671143 ATCTATGTTCTTTTCACAAAATACCAAGCAAACTAGATCGTTGT-AGTTAGGATACAAGATATTG
196 ATCTATGTTCTTTTCACAAAATACCAAGCAAAATAGATAGTT-TCA-TTAGGATACAAGATATTC
* *
9671207 TTGCTTTTGCTCA-CGAAAAAAGCATGTCACCTTTTCATTTTGTTTGGTTTCAAAGTTCATC
259 TTGCTTTTGCTCACCAAAAAAAGCATGTCACCATTTCATTTTGTTTGGTTTCAAAGTTCATC
* * * * * * *
9671268 CTTTAACTTATTTATACTTTCACCATCGTAAAAGTATAGTTTTTTTTTTTCACAAAGTACCAAGC
1 CTTCAACTTATTTAAACTTCCACCATCGTAAAACTATAATTTCTTTTTTTCACAAAGTACCAAGA
* * *
9671333 AAAATAGTTTATTACAATTGGGAAACAACATATTAT-TGCTTTTGTTTAAC-AAAAAAAGCATTT
66 AAAATAGTTTATTACAATTGGGAAACAACATATTATGGGCTTTCGTTT-ACTAAAAAAACCATTT
** * ** * * *
9671396 CTTGCTTTCATTTTGTTTGGTTTTAATGTGGGTCCTTCCATTAGGTCAAACTT-GCGCCATCTTA
130 CTACCATTCATTTTAATTGGTTTCAAAGTGGATCCTTCCATTAGGTCAAACTTAG-GCCAT-TTA
* * * *
9671460 AAAATCTATGTTCTTTTCCCAAAGTACCATGCAAAATAGATAGTTTCCATTAGGATATAAGATAT
193 AAAATCTATGTTCTTTTCACAAAATACCAAGCAAAATAGATAGTTT-CATTAGGATACAAGATAT
* * * ** * ** *
9671525 TCTTGCTTTTGTTTACCAAAAAAAGCATTTCTTCATTTCATTTTGTTTTGTTTCAAAGTTGGTT
257 TCTTGCTTTTGCTCACCAAAAAAAGCATGTCACCATTTCATTTTGTTTGGTTTCAAAGTTCATC
9671589 CTTCAACTTATTTAAACTTCCACCATCGTAAAACTATAATTTCTTTT
1 CTTCAACTTATTTAAACTTCCACCATCGTAAAACTATAATTTCTTTT
9671636 CAAAAAGTAC
Statistics
Matches: 304, Mismatches: 55, Indels: 14
0.82 0.15 0.04
Matches are distributed among these distances:
317 34 0.11
318 1 0.00
319 69 0.23
320 119 0.39
321 81 0.27
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (320 bp):
CTTCAACTTATTTAAACTTCCACCATCGTAAAACTATAATTTCTTTTTTTCACAAAGTACCAAGA
AAAATAGTTTATTACAATTGGGAAACAACATATTATGGGCTTTCGTTTACTAAAAAAACCATTTC
TACCATTCATTTTAATTGGTTTCAAAGTGGATCCTTCCATTAGGTCAAACTTAGGCCATTTAAAA
ATCTATGTTCTTTTCACAAAATACCAAGCAAAATAGATAGTTTCATTAGGATACAAGATATTCTT
GCTTTTGCTCACCAAAAAAAGCATGTCACCATTTCATTTTGTTTGGTTTCAAAGTTCATC
Found at i:9672931 original size:159 final size:159
Alignment explanation
Indices: 9672409--9676094 Score: 1990
Period size: 159 Copynumber: 23.2 Consensus size: 159
9672399 CTCAAACATC
* *
9672409 ATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCCCTTTT--TTTTTTTTGGTTTCAAAGTT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCT-CCTTTTCATTTTGTTTGGTTTCAAAGTT
* * * * * * * * **
9672472 GATCTTTCAATTCGTTAAAACTTACTCCATCGTAAAAATCTATGTTCTTTTCACATGGTACCAAG
65 GGTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAAG
*
9672537 -ACAAATAGATAGTTCCCATTGGGATACAAA
130 CA-AAATAGATAGTTCCCATTGGGATACAAG
* * * *
9672567 ATATTGTTGCTTTCGTTTATC-AAAAAAGCATTT-TTC-ATTCATTTTGTTTGGTTTCAAAGTTG
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
* ** * * *
9672629 GTCATTCAACTT-GTTCAAACTTTGTACAT-TGTAAAAGTATAAATTCTTTTCACAAAGTA-CAG
66 GTCCTTCAA-TTAGTTCAAACTTACTCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACCA-
* *
9672691 AG-AAAATA-ATTTGTTACCATTGGGATACACA-
128 AGCAAAATAGA-TAGTTCCCATTGGGATACA-AG
* * * ** *
9672722 ATATT-TTGGTTCGTGCTTACCAAAAAAA-CTATTTCTCCCATTAATTTTGTTTGGTTTCAAAGT
1 ATATTGTTGCTT-TTGTTTACCAAAAAAAGC-ATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGT
* * * * * *
9672785 TGGCCCTTCCATTAGGTCAAACTTAGTCCATCTTTAAAATCA-AAGTACTTTTCATAAAGTACCA
64 TGGTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAAT-ATAAGTTCTTTTCACAAAGTACCA
* ** *
9672849 AGCAAAATAGATAGTTTCTGTTAGGATACAAG
128 AGCAAAATAGATAGTTCCCATTGGGATACAAG
* * *
9672881 ATATTGTTACTTTTGTTTACCTAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
* * * * * ** *
9672946 GTGCTTCCATTCGATGC-AACTT-CATCCATC-ATAAAAGTATAAGTTCTTTTTGCAAAGTATCA
66 GTCCTTCAATTAG-TTCAAACTTAC-TCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACCA
* * * * * * *
9673008 AACAAAATTGATTGTTACCTTTGGGATATAAA
128 AGCAAAATAGATAGTTCCCATTGGGATACAAG
* ** * * *
9673040 ATATT-TT--TTTTGGCTTATGAAAAAAAGCATTTCTCATTTTCATTTTGTTCGGTTTTAAAGTT
1 ATATTGTTGCTTTT-GTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTT
* * * * *
9673102 AGTCCTTTAACTCA-TTCAAA-TTTCTTCCATC-GTAAAAGTATAAGTT-TTTT-ACAAAGTA-C
65 GGTCCTTCAA-TTAGTTCAAACTTAC-TCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACC
* * * * * *
9673161 AGAGAAAAATCA-TTTGTTACCATTAGGATACACG
127 A-AGCAAAAT-AGATAGTTCCCATTGGGATACAAG
* * * *** * *
9673195 ATATTGTTGATTTTCTTTCCCAAAAAATTTATTTAT-CTCATTCATTTTGTTTGGTTTCAAAGTT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCT-TTTCATTTTGTTTGGTTTCAAAGTT
* * * * * * * * * *
9673259 GGTCCTTCAATTCGATCAAAACTTACTCTATCATAAAAATCTATGTT-TTTTCACTAGGTACCTA
65 GGTCCTTCAATTAGTTC-AAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAA
* * *
9673323 GCAAAATGGGTAGTTCCCATTGGGATACAAC
129 GCAAAATAGATAGTTCCCATTGGGATACAAG
* * * *
9673354 ATATTGTTGCTTTTGTTTGCCAAAAAAACCATTTCT-CTCATTCATTTTATTTGGTTTCAAAGTT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCT-TTTCATTTTGTTTGGTTTCAAAGTT
* * * * ** * * * * * *
9673418 GATCATTCTATTAGGTCAAACTTGGTCCATCTTTATAATCTATGTACTTTTAACATAGTACCAAG
65 GGTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAAG
* * * *
9673483 CAAATTAGATAATTCCCTTTAGGATACAAG
130 CAAAATAGATAGTTCCCATTGGGATACAAG
** * *
9673513 ATATTGTTGCTTTTACTTACCAAAAAAAACATTTCTACC-TTTCATTTTGTTTGGTTCCAAAGTT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCT-CCTTTTCATTTTGTTTGGTTTCAAAGTT
** * * * *
9673577 CTTCTTTCAACTCA-TTCAAA---ATTCCATCATTGTAAAACTATAGGTTCTTTTCACAAAGTAC
65 GGTCCTTCAA-TTAGTTCAAACTTACTCCATC-TT-TAAAA-TATAAGTTCTTTTCACAAAGTAC
* ** * * *
9673638 CAAGCGAAATATTTTGTTACCATTGGGATACAAC
126 CAAGCAAAATAGATAGTTCCCATTGGGATACAAG
* * * * *
9673672 ATGTTGTTGCTTTCGTTTACTAAAAAAAGCATTTCTTGC-TTTCATTTTATTTGGTTTCAAAGTT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTC-TCCTTTTCATTTTGTTTGGTTTCAAAGTT
* ** * * * * * *
9673736 GGTCCTTCCATTAGACCAAACTTACTCCATCATAAAAATTTATGTTATTTT-ATAAAGTACCAAG
65 GGTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAAG
* ** * *
9673800 CAGAATAGAT-GTTCCCCA-TAAGAAATAAG
130 CAAAATAGATAGTT-CCCATTGGGATACAAG
* * * * * * *
9673829 ATATTCTTGCTTTCGTTTACCAAAAAAAGCATTTTTCCATTTCATTTTATTTAGTTACAAAGTTG
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
* * * * * *
9673894 GTCCTTTAACTCA-TCCAAATTTCCTCCAT-TGTAAAAGTATAAGTTCTTTTCACAAAGTACCAA
66 GTCCTTCAA-TTAGTTCAAACTTACTCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACCAA
* * * *
9673957 GCAAAAGAGTTTGTTACCAATT-GGATACACA-
129 GCAAAATAGATAGTT-CCCATTGGGATACA-AG
* * * * * *
9673988 ATATTGTTGTTTTTGTTTTACAAAAAAAAAAAAACATTACTCCCTTTT-ATTTTATTTTGTTTCA
1 ATATTGTTGCTTTTG-TTTAC----CAAAAAAAGCATTTCT-CCTTTTCATTTTGTTTGGTTTCA
* * * *
9674052 AAGTTGGTCCTT-AAGTT-GTTCAAACTTCCTCCATC-ATAAAAGTATAAGTTCATTTCGCAAAG
60 AAGTTGGTCCTTCAA-TTAGTTCAAACTTACTCCATCTTTAAAA-TATAAGTTCTTTTCACAAAG
* * * * *
9674114 CACCAAGCAAAATAGATA-TTCGCTTTTGTATACAAG
123 TACCAAGCAAAATAGATAGTTCCCATTGGGATACAAG
* * *
9674150 ATATTGTTGCTTTGGTTTAGCAAAAAAAAAGCATTTCT-CTTGTCATTTTGTTTGGTATT-AAAG
1 ATATTGTTGCTTTTGTTTA-C-CAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGT-TTCAAAG
* * * * ** * * *
9674213 TTAGTCCTTCAACTCGTTCAAACTTCCTCCAT-GGTAAAAGTATAAGTTCTTTTTATAAAGTACA
63 TTGGTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACC
* * * * * * *
9674277 AAGCAAAATTGTTGGTTACTACTGGGATACATG
127 AAGCAAAATAGATAGTTCCCATTGGGATACAAG
* ** * * * ** * *
9674310 ATATTGTTGCTTTTATTTATATAAAAAAAAAAAACCATCTATCCCATTCATTTTATTTGGTTTGA
1 ATATTGTTGC-TTT-TGT-T-T--ACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCA
* * ** * * * * * *
9674375 AAGATGG-CTTTTCCTTTAGGTCAAAATTAGTCCAT-TTAAAAATCTATGTTCTTTTCACAAAGT
60 AAGTTGGTC-CTTCAATTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGT
** * ** *
9674438 TGCAAACAAGCTAGATAGTTCTCATTGGGATACAAG
124 ACCAAGCAAAATAGATAGTTCCCATTGGGATACAAG
* * * *
9674474 ATATTGTTGCTTTTGCTTACCAAAAAAAGCATTTCACCCTTTCATTTTGTTTGGTTTCAAAGTTC
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
* * * * * * * * *
9674539 ATCCTTCAACTCA-TTCAAACTTTCACCATCATAAAAATATAGGTTTTTTTCACAAAGTACCAAT
66 GTCCTTCAA-TTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAAG
** * * * * * * *
9674603 TGAAATTGCTTGTTACCATCGGGAAACAAC
130 CAAAATAGATAGTTCCCATTGGGATACAAG
* * *
9674633 ATATTGTT-CTTTTCATTTACCAAAAAAAGCATTTCTCATTTTTATTTTGTTTGGTTTCAAAGTT
1 ATATTGTTGCTTTT-GTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTT
* * * ** * * ** * * *
9674697 AGTACTTCCATTACATCAAACTTACTCCATCTTAAAAATCTATTTTCTTTTAACAAAGTTCTAAG
65 GGTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAAG
* * * ** *
9674762 CAAAATAGATTGTTCCTAATGGGATATTAC
130 CAAAATAGATAGTTCCCATTGGGATACAAG
*** *
9674792 ATATTGTTGCTTACATTTA-CATAAAAAAGCATTTCTCC-CTTCATTTTGTTTGGTTTCAAAGTT
1 ATATTGTTGCTTTTGTTTACCA-AAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTT
* * * * ** *
9674855 AGTCTTTCAACTT-TTTCAAACTTCCTTGATC-TTAAAAGTATAAGTTCTTTTCACAAAGTATCA
65 GGTCCTTCAA-TTAGTTCAAACTTACTCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACCA
* ** * *
9674918 AGCAAAATAGTTTTTTACCATTGGGATACACG
128 AGCAAAATAGATAGTTCCCATTGGGATACAAG
*** * * *
9674950 ATATTGTTG-TCTTTGTTGTA-CAAAAAAATTGTTACACCCTTTCATTTTGTTTGGTTTCAAAGT
1 ATATTGTTGCT-TTTGTT-TACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGT
* * ** * * * * *
9675013 TGGTCCTTCAACTT-GTTCAAACTTCCACCA-CGGTAAAAGTGTAAGCTGTTTACACAAAGTAAC
64 TGGTCCTTCAA-TTAGTTCAAACTTACTCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACC
** *
9675076 AAGCAAAATATTTTA-TTACCATTGGGATACACA-
127 AAGCAAAATA-GATAGTTCCCATTGGGATACA-AG
* * * * * ** * *
9675109 AAATTGTTGGTTTTGTTTACCAAATAGACCATTTCTCCAATTCATTTTATTTGGTTTCAAAATTG
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
* * * * * * * * **
9675174 ATCCTTCAATTCA-ATCAAACATACTCTATC-GTAAGAATTTATGTTCTTTTCACATAGTAATAA
66 GTCCTTCAATT-AGTTCAAACTTACTCCATCTTTAA-AATATAAGTTCTTTTCACAAAGTACCAA
** * * *
9675237 GCAAAATAGATAGTTTACGTTGTGATAGAAAG
129 GCAAAATAGATAGTTCCCATTGGGATA-CAAG
* * * *
9675269 ATATTGTTACTTTTGTTTACTAAAAAAAAAAGAAAAACATTTCT-CTCATTCATTTTATTTGGTT
1 ATATTGTTGCTTTTGTTTAC---CAAAAAAAG-----CATTTCTCCT-TTTCATTTTGTTTGGTT
* * * ** ** * * *
9675333 TCACAGTTGGTCTTTCAACTCCTTCAAACTTTA-TAAAT-TGTGAAAGTATAATTTCTTTTCACA
57 TCAAAGTTGGTCCTTCAATTAGTTCAAAC-TTACTCCATCT-TTAAAATATAAGTTCTTTTCACA
** * * * * *
9675396 AAGTACTGAGTAAAATAGTTTGTTACCTTTGGGATA-AATG
120 AAGTACCAAGCAAAATAGATAGTTCCCATTGGGATACAA-G
* * ** * *** * *
9675436 ATATTGTGGTTTTTGTTTACCAAAGGAACCATTTCTCGAATTCATTTTGTTTGGTTACAAAATTG
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
* * *
9675501 GTCCTTTC-ATTAGGTT-AAACTTAGTCCATCTTTAAAATCTAAGTTTTTTTCACAAAGTACCAA
66 GTCC-TTCAATTA-GTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAA
* ***
9675564 ACAAAATAGATAGTTCATGTTGGGATACAAG
129 GCAAAATAGATAGTTCCCATTGGGATACAAG
* * * * * * *
9675595 GTATTATTGCTTTCGTTTACTAAAAAAAGCGTTTTTCC-TTTCATTTTGTTTAGTTTCAAAGTTG
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
* * * * * * * * * *
9675659 GTGCTTCCATTTGGTCCAACTTCCTCTAT-TGTAAAAGTATAAGTTTTTTTTTCATAAA--ACAC
66 GTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAA-TATAAG--TTCTTTTCACAAAGTAC-C
** * * * *
9675721 AAAAAAAAAAAACAGATTCTCCCTTTGGGATACAAG
127 AAGCAAAATAGATAG--T-TCCCATTGGGATACAAG
** * *
9675757 ATATAATTGCTTTGGTTTACCAAAAAAA-C-TGTTACTCCCTTTCATTTTGTTTGGTTTCAAAGT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCAT-TT-CTCCTTTTCATTTTGTTTGGTTTCAAAGT
* * * * * *
9675820 T-GTCATTCAACTCA-TTCAAACTTCCTCAATC-ATAAAATTATAAGTTCTTTTCTCAAAGTA-C
64 TGGTCCTTCAA-TTAGTTCAAACTTACTCCATCTTTAAAA-TATAAGTTCTTTTCACAAAGTACC
* ** * *
9675881 ATAGCAAAATAGTTTCTTACCATTAGGATAC---
127 A-AGCAAAATAGATAGTTCCCATTGGGATACAAG
** * * * *
9675912 --A---------TTGTTTACCAAAAAATCCATTACTCCCATTT-ATTTTATTTGGCTTCAAAGTT
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCT-CCTTTTCATTTTGTTTGGTTTCAAAGTT
* * * * * * * * * * * **
9675965 GGTCCTTCCATTCGATCAAATTTACTCAATCGTAAAAATCTATGCTCTTTTCGCAAAGTATAAAG
65 GGTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAAG
*
9676030 CAAAATAGATAGCTCCCATTGGGATACAAG
130 CAAAATAGATAGTTCCCATTGGGATACAAG
* *
9676060 ATATTGTTGCTTTTGTTTACCAATAAAACCATTTC
1 ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTC
9676095 ATGCTCTTTT
Statistics
Matches: 2683, Mismatches: 675, Indels: 339
0.73 0.18 0.09
Matches are distributed among these distances:
144 36 0.01
145 69 0.03
146 6 0.00
150 1 0.00
153 1 0.00
154 10 0.00
155 74 0.03
156 100 0.04
157 251 0.09
158 439 0.16
159 1107 0.41
160 103 0.04
161 24 0.01
162 103 0.04
163 89 0.03
164 109 0.04
165 46 0.02
166 3 0.00
167 19 0.01
168 89 0.03
169 4 0.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (159 bp):
ATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTG
GTCCTTCAATTAGTTCAAACTTACTCCATCTTTAAAATATAAGTTCTTTTCACAAAGTACCAAGC
AAAATAGATAGTTCCCATTGGGATACAAG
Found at i:9673559 original size:318 final size:317
Alignment explanation
Indices: 9672408--9676094 Score: 2225
Period size: 317 Copynumber: 11.6 Consensus size: 317
9672398 TCTCAAACAT
* * *
9672408 CATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCCCTTT-TTTTTTTTTGGTTTCAAAGTT
1 CATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTCAAAGTT
* * * * * * **
9672472 GATCTTTCAATTCGTTAAAACTTACTCCATCGTAAAAATCTATGTTCTTTTCACATGGTACCAAG
66 GATCCTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAGTACCAAG
* * * * *
9672537 -ACAAATAGATAGTTCCCATTGGGATACAAAATATTGTTGCTTTCGTTTATC-AAAAAAGCATTT
131 CA-AAATAGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAAGCATTT
* * * * * ** * *
9672600 -TTCATTCATTTTGTTTGGTTTCAAAGTTGGTCATTCAACTTGTTCAAACTTTGTACATTGTAAA
195 CTCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGATCAAACTTCCTCCATCGTAAA
* **
9672664 AGTATAAATTCTTTTCACAAAGTA-CAGAG-AAAATAATTTGTTACCATTGGGATAC-A
260 AGTATAAGTTCTTTTCACAAAGTACCA-AGCAAAATTGTTTGTTACCATTGGGATACAA
* * * * * * * *
9672720 CAATATT-TTGGTTCGTGCTTACCAAAAAAACTATTTCTCCCATTAATTTTGTTTGGTTTCAAAG
1 C-ATATTGTTGCTT-TTGTTTACCAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTCAAAG
** * * * * * *
9672784 TTGGCCCTTCCATTAGGTCAAACTTAGTCCATCTTTAAAATCAAAGTACTTTTCATAAAGTACCA
64 TTGATCCTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAGTACCA
* * *
9672849 AGCAAAATAGATAGTT-TCTGTTAGGATACAAGATATTGTTACTTTTGTTTACCTAAAAAAGCAT
129 AGCAAAATAGATAGTTCCCT-TTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAAGCAT
* * * * * *
9672913 TTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTTGTGCTTCCATTCGATGC-AACTTCATCCATCA
193 TTCTCC-TTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGAT-CAAACTTCCTCCATCG
** * * * * *
9672977 TAAAAGTATAAGTTCTTTTTGCAAAGTATCAAACAAAATTGATTGTTACCTTTGGGATATAA
256 TAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACCATTGGGATACAA
* * ** * * * *
9673039 AATATT-TT--TTTTGGCTTATGAAAAAAAGCATTTCTCAT-TTTCATTTTGTTCGGTTTTAAAG
1 CATATTGTTGCTTTT-GTTTACCAAAAAAACCATTTCTC-TCTTTCATTTTATTTGGTTTCAAAG
** * * * * * * *
9673100 TT-AGTCCTTTAACTCA-TTCAAA-TTTCTTCCATCGTAAAAGTATAAGTT-TTTT-ACAAAGTA
64 TTGA-TCCTTCCA-TTAGGTCAAACTTAC-TCCATCTTAAAAATCTATGTTCTTTTCACAAAGTA
* * * * * * * * * *
9673160 -CAGAGAAAAATCA-TTTGTTACCATTAGGATACACGATATTGTTGATTTTCTTTCCCAAAAAAT
126 CCA-AGCAAAAT-AGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAA
** * * * * *
9673223 TTATTTATCTCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAATTCGATCAAAACTTACTCT
189 GCATTTCTC-CTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGATC-AAACTTCCTCC
* * * * * * * * * * *
9673288 ATCATAAAAATCTATGTT-TTTTCACTAGGTACCTAGCAAAATGGGTAGTTCCCATTGGGATACA
252 ATCGTAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACCATTGGGATACA
9673352 A
317 A
* *
9673353 CATATTGTTGCTTTTGTTTGCCAAAAAAACCATTTCTCTCATTCATTTTATTTGGTTTCAAAGTT
1 CATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTCAAAGTT
* * ** * * * * *
9673418 GATCATTCTATTAGGTCAAACTTGGTCCATCTTTATAATCTATGTACTTTTAACATAGTACCAAG
66 GATCCTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAGTACCAAG
* * ** *
9673483 CAAATTAGATAATTCCCTTTAGGATACAAGATATTGTTGCTTTTACTTACCAAAAAAAACATTTC
131 CAAAATAGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTC
* ** * * *
9673548 TACCTTTCATTTTGTTTGGTTCCAAAGTTCTTCTTTCAACTC-ATTCAAAATTCCAT-CATTGTA
196 T-CCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGA-TCAAACTTCC-TCCATCGTA
* * *
9673611 AAACTATAGGTTCTTTTCACAAAGTACCAAGCGAAATAT-TTTGTTACCATTGGGATACAA
258 AAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAAT-TGTTTGTTACCATTGGGATACAA
* * * *
9673671 CATGTTGTTGCTTTCGTTTACTAAAAAAAGCATTTCT-TGCTTTCATTTTATTTGGTTTCAAAGT
1 CATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCT-CTTTCATTTTATTTGGTTTCAAAGT
* ** * * * *
9673735 TGGTCCTTCCATTAGACCAAACTTACTCCATCATAAAAATTTATGTTATTTT-ATAAAGTACCAA
65 TGATCCTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAGTACCAA
* ** * * * * *
9673799 GCAGAATAGAT-GTTCCCCATAAGAAATAAGATATTCTTGCTTTCGTTTACCAAAAAAAGCATTT
130 GCAAAATAGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAAGCATTT
* * * * * * *
9673863 TTCCATTTCATTTTATTTAGTTACAAAGTTGGTCCTTTAACTC-ATCCAAATTTCCTCCATTGTA
195 CTCC-TTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGAT-CAAACTTCCTCCATCGTA
**
9673927 AAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAAGAGTTTGTTACCAATT-GGATAC-A
258 AAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACC-ATTGGGATACAA
* * * * * * *
9673986 CAATATTGTTGTTTTTGTTTTACAAAAAAAAAAAAACATTACTCCCTTTTATTTTATTTTGTTTC
1 C-ATATTGTTGCTTTTG-TTTAC----CAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTC
* * * * * * * * * *
9674051 AAAGTTGGTCCTT-AAGTT-GTTCAAACTTCCTCCATCATAAAAGTATAAGTTCATTTCGCAAAG
60 AAAGTTGATCCTTCCA-TTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAG
* * * * * *
9674114 CACCAAGCAAAATAGATA-TTCGCTTTTGTATACAAGATATTGTTGCTTTGGTTTAGCAAAAAAA
124 TACCAAGCAAAATAGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTA-C-CAAAAA
* *
9674178 AAGCATTTCT-CTTGTCATTTTGTTTGGTATT-AAAGTTAGTCCTTCAACTCGTTCAAACTTCCT
187 AAGCATTTCTCCTT-TCATTTTGTTTGGT-TTCAAAGTTGGTCCTTCAACTCGATCAAACTTCCT
* * * * * * *
9674241 CCATGGTAAAAGTATAAGTTCTTTTTATAAAGTACAAAGCAAAATTGTTGGTTACTACTGGGATA
250 CCATCGTAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACCATTGGGATA
*
9674306 CAT
315 CAA
* * ** * * * * *
9674309 GATATTGTTGCTTTTATTTATATAAAAAAAAAAAACCATCTATCCCATTCATTTTATTTGGTTTG
1 CATATTGTTGC-TTT-TGT-T-T--ACCAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTC
* * * * * *
9674374 AAAGATG-GCTTTTCCTTTAGGTCAAAATTAGTCCAT-TTAAAAATCTATGTTCTTTTCACAAAG
60 AAAGTTGATC-CTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAG
** * ** * * * *
9674437 TTGCAAACAAGCTAGATAGTTCTCATTGGGATACAAGATATTGTTGCTTTTGCTTACCAAAAAAA
124 TACCAAGCAAAATAGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAA
* ** * *
9674502 GCATTTCACCCTTTCATTTTGTTTGGTTTCAAAGTTCATCCTTCAACTC-ATTCAAACTTTCACC
189 GCATTTC-TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGA-TCAAACTTCCTCC
* * * * *** * * *
9674566 ATCATAAAAATATAGGTTTTTTTCACAAAGTACCAATTGAAATTGCTTGTTACCATCGGGAAACA
252 ATCGTAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACCATTGGGATACA
9674631 A
317 A
* * * *
9674632 CATATTGTT-CTTTTCATTTACCAAAAAAAGCATTTCTCAT-TTTTATTTTGTTTGGTTTCAAAG
1 CATATTGTTGCTTTT-GTTTACCAAAAAAACCATTTCTC-TCTTTCATTTTATTTGGTTTCAAAG
* ** * * * *
9674695 TT-AGTACTTCCATTACATCAAACTTACTCCATCTTAAAAATCTATTTTCTTTTAACAAAGTTCT
64 TTGA-TCCTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAGTACC
* * * ** * ***
9674759 AAGCAAAATAGATTGTT-CCTAATGGGATATTACATATTGTTGCTTACATTTA-CATAAAAAAGC
128 AAGCAAAATAGATAGTTCCCT-TTAGGATACAAGATATTGTTGCTTTTGTTTACCA-AAAAAAGC
* * * *** ** *
9674822 ATTTCTCCCTTCATTTTGTTTGGTTTCAAAGTTAGTCTTTCAACTTTTTCAAACTTCCTTGATCT
191 ATTTCTCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGATCAAACTTCCTCCATCG
* * *
9674887 TAAAAGTATAAGTTCTTTTCACAAAGTATCAAGCAAAATAGTTTTTTACCATTGGGATAC-A
256 TAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACCATTGGGATACAA
*** * * * *
9674948 CGATATTGTTG-TCTTTGTTGTA-CAAAAAAATTGTTACACCCTTTCATTTTGTTTGGTTTCAAA
1 C-ATATTGTTGCT-TTTGTT-TACCAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTCAAA
* * * * * * * * * * * *
9675011 GTTGGTCCTTCAACTT-GTTCAAACTTCCACCA-CGGTAAAAGTGTAAGCTGTTTACACAAAGTA
63 GTTGATCCTTCCA-TTAGGTCAAACTTACTCCATC-TTAAAAATCTATGTTCTTTTCACAAAGTA
* ** * * * * * * *
9675074 ACAAGCAAAATATTTTA-TTACCATTGGGATACACA-AAATTGTTGGTTTTGTTTACCAAATAGA
126 CCAAGCAAAATA-GATAGTTCCCTTTAGGATACA-AGATATTGTTGCTTTTGTTTACCAAAAAAA
* * * * * * * * * *
9675137 CCATTTCTCCAATTCATTTTATTTGGTTTCAAAATTGATCCTTCAATTCAATCAAACATACTCTA
189 GCATTTCTCC-TTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGATCAAACTTCCTCCA
* * * ** * * * * *
9675202 TCGTAAGAA-TTTATGTTCTTTTCACATAGTAATAAGCAAAATAGATAGTTTA-CGTTGTGATAG
253 TCGTAA-AAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTG-TTACCATTGGGATA-
*
9675265 AAA
315 CAA
* * * * *
9675268 GATATTGTTACTTTTGTTTACTAAAAAAAAAAGAAAAACATTTCTCTCATTCATTTTATTTGGTT
1 CATATTGTTGCTTTTGTTTAC-------CAAA-AAAACCATTTCTCTCTTTCATTTTATTTGGTT
* * * * * *** ** * * *
9675333 TCACAGTTGGTCTTTCAACTCCTTCAAACTTTA-TAAAT-TGTGAAAGTATAAT-TTCTTTTCAC
58 TCAAAGTTGATCCTTCCATTAGGTCAAAC-TTACTCCATCT-TAAAAATCT-ATGTTCTTTTCAC
** * * * * * * *
9675395 AAAGTACTGAGTAAAATAGTTTGTTACCTTTGGGATA-AATGATATTGTGGTTTTTGTTTACCAA
120 AAAGTACCAAGCAAAATAGATAGTTCCCTTTAGGATACAA-GATATTGTTGCTTTTGTTTACCAA
** * ** * * * * * *
9675459 AGGAACCATTTCTCGAATTCATTTTGTTTGGTTACAAAATTGGTCCTTTC-ATTAGGTTAAACTT
184 AAAAAGCATTTCTC-CTTTCATTTTGTTTGGTTTCAAAGTTGGTCC-TTCAACTCGATCAAACTT
** * * * * * * *
9675523 AGTCCATCTTTAAAA-TCTAAGTTTTTTTCACAAAGTACCAAACAAAATAGATAGTT--CATGTT
247 CCTCCATC-GTAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACCA--TT
9675585 GGGATACAA
309 GGGATACAA
** * * * * * * * *
9675594 GGTATTATTGCTTTCGTTTACTAAAAAAAGCGTTTTTC-CTTTCATTTTGTTTAGTTTCAAAGTT
1 CATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTCAAAGTT
* * * * * * * * * * *
9675658 GGTGCTTCCATTTGGTCCAACTTCCTCTAT-TGTAAAAGTATAAGTTTTTTTTTCATAAA--ACA
66 GATCCTTCCATTAGGTCAAACTTACTCCATCT-TAAAAATCT-A-TGTTCTTTTCACAAAGTAC-
** * * * * ** *
9675720 CAAAAAAAAAAAACAGATTCTCCCTTTGGGATACAAGATATAATTGCTTTGGTTTACCAAAAAAA
127 CAAGCAAAATAGATAG--T-TCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAA
*
9675785 -C-TGTTACTCCCTTTCATTTTGTTTGGTTTCAAAGTT-GTCATTCAACTC-ATTCAAACTTCCT
189 GCAT-TT-CT-CCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGA-TCAAACTTCCT
* * * * * * *
9675846 CAATCATAAAATTATAAGTTCTTTTCTCAAAGTA-CATAGCAAAATAGTTTCTTACCATTAGGAT
250 CCATCGTAAAAGTATAAGTTCTTTTCACAAAGTACCA-AGCAAAATTGTTTGTTACCATTGGGAT
9675910 ---A
314 ACAA
* * * *
9675911 C--A---------TTGTTTACCAAAAAATCCATTACTCCCATTT-ATTTTATTTGGCTTCAAAGT
1 CATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCTC-TTTCATTTTATTTGGTTTCAAAGT
* * * * * * * * **
9675964 TGGTCCTTCCATTCGATCAAATTTACTCAATCGTAAAAATCTATGCTCTTTTCGCAAAGTATAAA
65 TGATCCTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAGTACCAA
* * * * *
9676029 GCAAAATAGATAGCTCCCATTGGGATACAAGATATTGTTGCTTTTGTTTACCAATAAAACCATTT
130 GCAAAATAGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAAGCATTT
9676094 C
195 C
9676095 ATGCTCTTTT
Statistics
Matches: 2589, Mismatches: 638, Indels: 305
0.73 0.18 0.09
Matches are distributed among these distances:
303 41 0.02
304 3 0.00
305 11 0.00
306 29 0.01
307 50 0.02
308 3 0.00
312 6 0.00
313 35 0.01
314 241 0.09
315 57 0.02
316 287 0.11
317 465 0.18
318 450 0.17
319 49 0.02
320 93 0.04
321 158 0.06
322 126 0.05
323 192 0.07
324 49 0.02
325 3 0.00
326 28 0.01
327 204 0.08
328 9 0.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (317 bp):
CATATTGTTGCTTTTGTTTACCAAAAAAACCATTTCTCTCTTTCATTTTATTTGGTTTCAAAGTT
GATCCTTCCATTAGGTCAAACTTACTCCATCTTAAAAATCTATGTTCTTTTCACAAAGTACCAAG
CAAAATAGATAGTTCCCTTTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAAAGCATTTC
TCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGATCAAACTTCCTCCATCGTAAAA
GTATAAGTTCTTTTCACAAAGTACCAAGCAAAATTGTTTGTTACCATTGGGATACAA
Found at i:9673767 original size:791 final size:787
Alignment explanation
Indices: 9672452--9674001 Score: 1694
Period size: 791 Copynumber: 2.0 Consensus size: 787
9672442 TCTCCCTTTT
* * * *
9672452 TTTTTTTTGGTTTCAAAGTTGATCTTTCAATTCGTTAAAACTTACTCCATCGTAAAAATCTATGT
1 TTTTGTTTGGTTTCAAAGTTGATCCTTCAATTCGTCAAAACTTACTCCATCATAAAAATCTATGT
9672517 TCTTTTCACATGGTACCAAGACAAATAGATAGTTCCCATTGGGATACAAAATATTGTTGCTTTCG
66 TCTTTTCACATGGTACCAAGACAAATAGATAGTTCCCATTGGGATACAAAATATTGTTGCTTTCG
* * * * *
9672582 TTTATCAAAAAAGCATTTTTCATTCATTTTGTTTGGTTTCAAAGTTGGTCATTCAACTTGTTCAA
131 TTTACCAAAAAACCATTTTTCATTCATTTTATTTGGTTTCAAAGTTGATCATTCAACTTGGTCAA
* * * **
9672647 ACTTTGTACATTGTAAAAGTATAAATTCTTTTCACAAAGTACAGAGAAAATAATTTGTTACCATT
196 ACTTGGTACATTGTAAAAGTATAAATACTTTTAACAAAGTACAGAGAAAATAATTAATTACCATT
* * * *
9672712 GGGATACACAATATTTTGGTTCGTGCTTACCAAAAAAACTATTTCTCCCATTAATTTTGTTTGGT
261 AGGATACACAATATTTTGCTTCGTACTTACCAAAAAAACTATTTCTACCATTAATTTTGTTTGGT
* * * * *
9672777 TTCAAAGTTGGCCCTTCCATTAGGTCAAACTTAGTCCATCTTTAAAATCAAAGTACTTTTCATAA
326 TCCAAAGTTCGCCCTTCAATCAGGTCAAA--TAGTCCATCTTTAAAATCAAAGTACTTTTCACAA
* ** * *
9672842 AGTACCAAGCAAAATAGATAGTTTCTGTTAGGATACAAGATATTGTTACTTTTGTTTACCTAAAA
389 AGTACCAAGCAAAATAGATAGTTACCATTAGGATACAACATATTGTTACTTTCGTTTACCTAAAA
* * * * *
9672907 AAGCATTTCTCCTTTTCATTTTGTTTGGTTTCAAAGTTTGTGCTTCCATTCGATGCAACTTCATC
454 AAGCATTTCTCCTTTTCATTTTATTTGGTTTCAAAGTTGGTCCTTCCATTAGATCCAACTTCATC
* * * * ** ** *
9672972 CATCATAAAAGTATAAGTTCTTTT-TGCAAAGTATCAAACAAAATTGATTGTTACCTTTGGGATA
519 CATCATAAAAATATAAGTTATTTTAT--AAAGTACCAAACAAAATAGA-TGTTACCCATAAGAAA
* * ** * * **
9673036 TAAAATATT-TT-TTTTGGCTTATGAAAAAAAGCATTTCT-CATTTTCATTTTGTTCGGTTTTAA
581 TAAAATATTCTTGCTTTCGCTTACCAAAAAAAGCATTTCTCCA-TTTCATTTTATTCAGTTACAA
* *
9673098 AGTTAGTCCTTTAACTCATTCAAATTTCTTCCATCGTAAAAGTATAAGTT-TTTT-ACAAAGTA-
645 AGTTAGTCCTTTAACTCATCCAAATTTCCTCCATCGTAAAAGTATAAGTTCTTTTCACAAAGTAC
*
9673160 CAGAGAAAAATCA-TTTGTTACC-ATTAGGATACACGATATTGTTGATTTTCTTTCCCAAAAAAT
710 CA-AGAAAAA-CAGTTTGTTACCAATT-GGATACACAATATTGTTGATTTTCTTTCCCAAAAAAT
9673223 TTATTTATCTCATTCA
772 TTATTTATCTCATTCA
* *
9673239 TTTTGTTTGGTTTCAAAGTTGGTCCTTCAATTCGATCAAAACTTACTCTATCATAAAAATCTATG
1 TTTTGTTTGGTTTCAAAGTTGATCCTTCAATTCG-TCAAAACTTACTCCATCATAAAAATCTATG
* * * *
9673304 TT-TTTTCAC-TAGGTACCTAG-CAAAATGGGTAGTTCCCATTGGGATACAACATATTGTTGCTT
65 TTCTTTTCACAT-GGTACCAAGAC-AAATAGATAGTTCCCATTGGGATACAAAATATTGTTGCTT
* * *
9673366 TTGTTTGCCAAAAAAACCATTTCTCTCATTCATTTTATTTGGTTTCAAAGTTGATCATTCTA-TT
128 TCGTTTACC-AAAAAACCATTT-T-TCATTCATTTTATTTGGTTTCAAAGTTGATCATTCAACTT
* * * * ** * *
9673430 AGGTCAAACTTGGTCCATCTTTATAA-TCTATGTACTTTTAACATAGTACCA-AGCAAATTAGA-
190 -GGTCAAACTTGGTACAT-TGTAAAAGTATAAATACTTTTAACAAAGTA-CAGAG-AAAATA-AT
* * * *
9673492 TAATTCCCTTTAGGATACA-AGATATTGTTGCTT-TTACTTACCAAAAAAAAC-ATTTCTACCTT
250 TAATTACCATTAGGATACACA-ATATT-TTGCTTCGTACTTACC-AAAAAAACTATTTCTACCAT
* ** * * *
9673554 TCATTTTGTTTGGTTCCAAAGTTCTTCTTTCAACTCA-TTCAAA-ATTCCATCATTGTAAAA-CT
312 TAATTTTGTTTGGTTCCAAAGTTCGCCCTTCAA-TCAGGTCAAATAGTCCATC-TT-TAAAATC-
* * * ** * * * *
9673616 ATAGGTTCTTTTCACAAAGTACCAAGCGAAATATTTTGTTACCATTGGGATACAACATGTTGTTG
373 A-AAGTACTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTAGGATACAACATATTGTTA
*
9673681 CTTTCGTTTA-CTAAAAAAAGCATTTCTTGC-TTTCATTTTATTTGGTTTCAAAGTTGGTCCTTC
437 CTTTCGTTTACCT-AAAAAAGCATTTC-TCCTTTTCATTTTATTTGGTTTCAAAGTTGGTCCTTC
* * * *
9673744 CATTAGA-CCAAACTT-ACTCCATCATAAAAATTTATGTTATTTTATAAAGTACCAAGCAGAATA
500 CATTAGATCC-AACTTCA-TCCATCATAAAAATATAAGTTATTTTATAAAGTACCAAACAAAATA
* * * *
9673807 GATGTTCCCCATAAGAAATAAGATATTCTTGCTTTCGTTTACCAAAAAAAGCATTTTTCCATTTC
563 GATGTTACCCATAAGAAATAAAATATTCTTGCTTTCGCTTACCAAAAAAAGCATTTCTCCATTTC
* * *
9673872 ATTTTATTTAGTTACAAAGTTGGTCCTTTAACTCATCCAAATTTCCTCCATTGTAAAAGTATAAG
628 ATTTTATTCAGTTACAAAGTTAGTCCTTTAACTCATCCAAATTTCCTCCATCGTAAAAGTATAAG
* * *
9673937 TTCTTTTCACAAAGTACCAAGCAAAAGAGTTTGTTACCAATTGGATACACAATATTGTTGTTTTT
693 TTCTTTTCACAAAGTACCAAGAAAAACAGTTTGTTACCAATTGGATACACAATATTGTTGATTTT
9674002 GTTTTACAAA
Statistics
Matches: 627, Mismatches: 104, Indels: 58
0.79 0.13 0.07
Matches are distributed among these distances:
786 2 0.00
787 89 0.14
788 47 0.07
789 24 0.04
790 95 0.15
791 295 0.47
792 26 0.04
793 44 0.07
794 5 0.01
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (787 bp):
TTTTGTTTGGTTTCAAAGTTGATCCTTCAATTCGTCAAAACTTACTCCATCATAAAAATCTATGT
TCTTTTCACATGGTACCAAGACAAATAGATAGTTCCCATTGGGATACAAAATATTGTTGCTTTCG
TTTACCAAAAAACCATTTTTCATTCATTTTATTTGGTTTCAAAGTTGATCATTCAACTTGGTCAA
ACTTGGTACATTGTAAAAGTATAAATACTTTTAACAAAGTACAGAGAAAATAATTAATTACCATT
AGGATACACAATATTTTGCTTCGTACTTACCAAAAAAACTATTTCTACCATTAATTTTGTTTGGT
TCCAAAGTTCGCCCTTCAATCAGGTCAAATAGTCCATCTTTAAAATCAAAGTACTTTTCACAAAG
TACCAAGCAAAATAGATAGTTACCATTAGGATACAACATATTGTTACTTTCGTTTACCTAAAAAA
GCATTTCTCCTTTTCATTTTATTTGGTTTCAAAGTTGGTCCTTCCATTAGATCCAACTTCATCCA
TCATAAAAATATAAGTTATTTTATAAAGTACCAAACAAAATAGATGTTACCCATAAGAAATAAAA
TATTCTTGCTTTCGCTTACCAAAAAAAGCATTTCTCCATTTCATTTTATTCAGTTACAAAGTTAG
TCCTTTAACTCATCCAAATTTCCTCCATCGTAAAAGTATAAGTTCTTTTCACAAAGTACCAAGAA
AAACAGTTTGTTACCAATTGGATACACAATATTGTTGATTTTCTTTCCCAAAAAATTTATTTATC
TCATTCA
Found at i:9676033 original size:145 final size:144
Alignment explanation
Indices: 9675771--9676037 Score: 331
Period size: 145 Copynumber: 1.8 Consensus size: 144
9675761 AATTGCTTTG
** * *
9675771 GTTTACCAAAAAAACTGTTACTCCCTTTCATTTTGTTTGGTTTCAAAGTTGTCATTCAACTCATT
1 GTTTACCAAAAAAACCATTACTCCCTTTCATTTTATTTGGCTTCAAAGTTGTCATTCAACTCATT
* * * * *
9675836 CAAACTTCCTCAATCATAAAATTATAAGTTCTTTTCTCAAAGTACATAGCAAAATAGTTTCTTAC
66 CAAACTTACTCAATCATAAAAATATAAGCTCTTTTCGCAAAGTACAAAGCAAAATAGTTTCTTAC
9675901 CATTAGGATACATT
131 CATTAGGATACATT
* * * *
9675915 GTTTACCAAAAAATCCATTACTCCCATTT-ATTTTATTTGGCTTCAAAGTTGGTCCTTCCATTCG
1 GTTTACCAAAAAAACCATTACTCCC-TTTCATTTTATTTGGCTTCAAAGTT-GTCATTCAACTC-
* * * * *
9675979 A-TCAAATTTACTCAATCGTAAAAATCTATGCTCTTTTCGCAAAGTATAAAGCAAAATAG
63 ATTCAAACTTACTCAATCATAAAAATATAAGCTCTTTTCGCAAAGTACAAAGCAAAATAG
9676038 ATAGCTCCCA
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
144 41 0.40
145 60 0.59
146 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (144 bp):
GTTTACCAAAAAAACCATTACTCCCTTTCATTTTATTTGGCTTCAAAGTTGTCATTCAACTCATT
CAAACTTACTCAATCATAAAAATATAAGCTCTTTTCGCAAAGTACAAAGCAAAATAGTTTCTTAC
CATTAGGATACATT
Found at i:9676157 original size:89 final size:89
Alignment explanation
Indices: 9676006--9676183 Score: 302
Period size: 89 Copynumber: 2.0 Consensus size: 89
9675996 GTAAAAATCT
* * *
9676006 ATGCTCTTTTCGCAAAGTATAAAGCAAAATAGATAGCTCCCATTGGGATACAAGATATTGTTGCT
1 ATGCTCTTTTCACAAAGTATAAAGCAAAATAGATAGCTCCCATTAGGACACAAGATATTGTTGCT
9676071 TTTGTTTACCAATAAAACCATTTC
66 TTTGTTTACCAATAAAACCATTTC
* *
9676095 ATGCTCTTTTCACAAATTATAAAGCAAAATAGATAGTTCCCATTAGGACACAAGATATTGTTGCT
1 ATGCTCTTTTCACAAAGTATAAAGCAAAATAGATAGCTCCCATTAGGACACAAGATATTGTTGCT
*
9676160 TTTGTTTACCAATAAAATCATTTC
66 TTTGTTTACCAATAAAACCATTTC
9676184 TCCCATTCAT
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (89 bp):
ATGCTCTTTTCACAAAGTATAAAGCAAAATAGATAGCTCCCATTAGGACACAAGATATTGTTGCT
TTTGTTTACCAATAAAACCATTTC
Found at i:9676539 original size:61 final size:61
Alignment explanation
Indices: 9676444--9676566 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
9676434 ACCATTGGGA
*
9676444 TACAATATATTGTTGCTTTCGTTTACCAAAAATAGCATTTCTCGCTTTCATTTTATTTGGT
1 TACAATATATTGTTGCTTTCGTTTACCAAAAATAGCATTTCTCACTTTCATTTTATTTGGT
9676505 TACAATATATTGTTGCTTTCGTTTACCAAAAATAGCATTTCTCACTTTCATTTTATTTGGT
1 TACAATATATTGTTGCTTTCGTTTACCAAAAATAGCATTTCTCACTTTCATTTTATTTGGT
9676566 T
1 T
9676567 TCAAAGTTGG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (61 bp):
TACAATATATTGTTGCTTTCGTTTACCAAAAATAGCATTTCTCACTTTCATTTTATTTGGT
Found at i:9676955 original size:163 final size:163
Alignment explanation
Indices: 9676690--9677308 Score: 446
Period size: 163 Copynumber: 3.9 Consensus size: 163
9676680 TTTGTTTATC
* * * *
9676690 AAAAATGGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTTCTTCCATTCAATCAAACT
1 AAAAAAGGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACT
* * * *
9676755 TCCTTTATTATAAAAGTATGAGTTCCTTTCTCAAAGTACCAAACAAAATAGATAGTTCTCATTGT
66 TCCTTTATTATAAAAGTATAAGTTCCTTTCACAAAGTACCAAACAAAATAGATAGTTCACATTGG
9676820 GATACAAGATATTGTTGCTTTTGCTTTTTTTTA
131 GATACAAGATATTGTTGCTTTTGCTTTTTTTTA
* * * ** *
9676853 AAAAAAGGCATTTCTTCCTTTCATTTTGTTTGGTTTCAATGTTGGTCCTTTAACTCGTTCGAACT
1 AAAAAAGGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACT
* * * * *
9676918 T-CTTCTATTGTAAAATTGTAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTCACATTG
66 TCCTT-TATTATAAAAGTATAAGTTCCTTTCACAAAGTACCAAACAAAATAGATAGTTCACATTG
* **
9676982 GGATAC-A-ATA-TATTG--TTT-CTTTCATTT-
130 GGATACAAGATATTGTTGCTTTTGCTTTTTTTTA
** * * **
9677009 ACCAAA-G-A--------ATTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACT
1 AAAAAAGGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACT
* * * * * * * * * * **
9677064 TTCTTCATTGTAAAAGTATAAGTTCTTTTCATAATGTACCAAGCAAAATTGTTTGTT-ACCATCA
66 TCCTTTATTATAAAAGTATAAGTTCCTTTCACAAAGTACCAAACAAAATAGATAGTTCA-CATTG
* * * *
9677128 GGATACACGAAATTGTTGCTTTTG----TTTATC
130 GGATACAAGATATTGTTGCTTTTGCTTTTTTTTA
* * * * * **
9677158 AAAAAAGGCATTTCTTCCATTCA--TTGTTTGGTTTTAAAGTTGGTCCTTCCATTCGGTCAAACT
1 AAAAAAGGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACT
* *** * * * * * * * *
9677221 TACACCATCACAAAAATCTATG-TGCTTGTCACAAAGTACCAAGCAAAATAGATAGCTC-CTATT
66 TCCTTTATTATAAAAGTATAAGTTCCTT-TCACAAAGTACCAAACAAAATAGATAGTTCAC-ATT
9677284 GGGATACAAGATATTGTTGCTTTTG
129 GGGATACAAGATATTGTTGCTTTTG
9677309 TTTACCAAAA
Statistics
Matches: 361, Mismatches: 72, Indels: 52
0.74 0.15 0.11
Matches are distributed among these distances:
145 1 0.00
146 96 0.27
147 3 0.01
148 4 0.01
149 8 0.02
150 1 0.00
151 4 0.01
154 1 0.00
155 1 0.00
156 8 0.02
157 103 0.29
158 3 0.01
159 5 0.01
160 4 0.01
161 3 0.01
162 4 0.01
163 112 0.31
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (163 bp):
AAAAAAGGCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACT
TCCTTTATTATAAAAGTATAAGTTCCTTTCACAAAGTACCAAACAAAATAGATAGTTCACATTGG
GATACAAGATATTGTTGCTTTTGCTTTTTTTTA
Found at i:9677143 original size:146 final size:146
Alignment explanation
Indices: 9676872--9677149 Score: 371
Period size: 146 Copynumber: 1.9 Consensus size: 146
9676862 ATTTCTTCCT
* * * * * *
9676872 TTCATTTTGTTTGGTTTCAATGTTGGTCCTTTAACTCGTTCGAACTTCTTCTATTGTAAAATTGT
1 TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTCTTCTATTGTAAAAGTAT
** * * *
9676937 AAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTCACATTGGGATACAATATATTGTTTCT
66 AAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTCACATCAGGATACAAGAAATTGTTGCT
9677002 TTCATTTACCAAAGAA
131 TTCATTTACCAAAGAA
9677018 TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTTCTTC-ATTGTAAAAGTA
1 TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAAC-TTCTTCTATTGTAAAAGTA
* * * * * *
9677082 TAAGTTCTTTTCATAATGTACCAAGCAAAATTGTTTGTT-ACCATCAGGATACACGAAATTGTTG
65 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTCA-CATCAGGATACAAGAAATTGTTG
9677146 CTTT
129 CTTT
9677150 TGTTTATCAA
Statistics
Matches: 113, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
145 1 0.01
146 106 0.94
147 6 0.05
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (146 bp):
TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTCTTCTATTGTAAAAGTAT
AAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTCACATCAGGATACAAGAAATTGTTGCT
TTCATTTACCAAAGAA
Found at i:9677287 original size:303 final size:305
Alignment explanation
Indices: 9676709--9677317 Score: 694
Period size: 303 Copynumber: 2.0 Consensus size: 305
9676699 ATTTCTCCCT
* * * * *
9676709 TTCATTTTGTTTGGTTTCAAAGTTGGTTCTTCCATTCAATCAAACTTCCTTTATTATAAAAGTAT
1 TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACTTCCTTCATTATAAAAGTAT
* * *
9676774 GAGTTCCTTTCTCAAAGTACCAAACAAAATAGATAGTTCTCATTGTGATACAAGATATTGTTGCT
66 AAGTTCCTTTCTCAAAGTACCAAACAAAATAGATAGTTCTCATAGTGATACAAGAAATTGTTGCT
* * * *
9676839 TTTGCTTTTTTTTAAAAAAAGGCATTTCTTCCTTTCATTTTGTTTGGTTTCAATGTTGGTCCTTT
131 TTTG---TTTTATAAAAAAAGGCATTTCTTCCATTCA-TTTGTTTGGTTTCAAAGTTGGTCCTTC
* * * * *** * * * *
9676904 AACTCGTTCGAACTTCTTCTATTGTAAAATTGTAAGTTCTTTTCACAAAGTACCAAGCAAAATAG
192 AACTCGGTCAAACTTCTACCATCACAAAAATCTAAGTGCTTGTCACAAAGTACCAAGCAAAATAG
* * *
9676969 ATAGTTCACATTGGGATACAATATATTGTTTCTTTCATTTACCAAAGAA
257 ATAGCTCACATTGGGATACAAGATATTGTTGCTTTCATTTACCAAAGAA
** * *
9677018 TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCGTTCAAACTTTCTTCATTGTAAAAGTAT
1 TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACTTCCTTCATTATAAAAGTAT
* * * * *
9677083 AAGTT-CTTT-TCATAATGTACCAAGCAAAATTGTTTGTTAC-CATCAG-GATACACGAAATTGT
66 AAGTTCCTTTCTCA-AA-GTACCAAACAAAATAGATAGTT-CTCAT-AGTGATACAAGAAATTGT
* *
9677144 TGCTTTTG-TTTATCAAAAAAGGCATTTCTTCCATTCA-TTGTTTGGTTTTAAAGTTGGTCCTTC
127 TGCTTTTGTTTTATAAAAAAAGGCATTTCTTCCATTCATTTGTTTGGTTTCAAAGTTGGTCCTTC
* * *
9677207 CATTCGGTCAAACTTAC-ACCATCACAAAAATCTATGTGCTTGTCACAAAGTACCAAGCAAAATA
192 AACTCGGTCAAACTT-CTACCATCACAAAAATCTAAGTGCTTGTCACAAAGTACCAAGCAAAATA
**
9677271 GATAGCTC-CTATTGGGATACAAGATATTGTTGCTTTTGTTTACCAAA
256 GATAGCTCAC-ATTGGGATACAAGATATTGTTGCTTTCATTTACCAAA
9677318 ACAATCATTT
Statistics
Matches: 252, Mismatches: 42, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
302 1 0.00
303 111 0.44
304 1 0.00
305 26 0.10
307 3 0.01
308 6 0.02
309 102 0.40
310 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (305 bp):
TTCATGTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCAATCAAACTTCCTTCATTATAAAAGTAT
AAGTTCCTTTCTCAAAGTACCAAACAAAATAGATAGTTCTCATAGTGATACAAGAAATTGTTGCT
TTTGTTTTATAAAAAAAGGCATTTCTTCCATTCATTTGTTTGGTTTCAAAGTTGGTCCTTCAACT
CGGTCAAACTTCTACCATCACAAAAATCTAAGTGCTTGTCACAAAGTACCAAGCAAAATAGATAG
CTCACATTGGGATACAAGATATTGTTGCTTTCATTTACCAAAGAA
Found at i:9679039 original size:158 final size:159
Alignment explanation
Indices: 9678794--9683329 Score: 2769
Period size: 159 Copynumber: 28.5 Consensus size: 159
9678784 AACCAGCCTT
* * * * * * *
9678794 CATCATAAAAATTTAAGTTTTTTTCACAAAATACCAAGC-AAATAGTTTGTTACCATTGAGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * * *
9678858 ACGACATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCTTTCATTTTGTTTGATTTCAAAG
66 AAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAAG
* * *
9678923 TTAGTCCTTCCATTCGGTCCAACTTCCTC
131 TTGGTCCTTCAATTCGGTCAAACTTCCTC
* ** * * *
9678952 CATCATAAAAGTATAAGCTCTTTTTGCAAAGCACTAAGCAAAATAGATAGGT-CCATTGGGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * ** *
9679016 AAGATATTGTTGCTTTGGTTTACCAAAAAAAGCATTTCTCCGTTTCATTTTGTTTGGCTTCAAAG
66 AAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAAG
* ** **
9679081 TTGGTCATTCAATTCATTCAAACTTTTTC
131 TTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * *
9679110 TATCATAAAAGTATAAGTTCTTTTCACAAAGTA-CATAGCAAAATAGTTTGTTACCATTAGGATA
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCA-AGCAAAATAGATAGTTACCATTGGGATA
* * * * * * * *
9679174 TATGATATTATTACTTTTGTTTACCAAAAAATCCATTTCCCCCATTGATTTTGTTTGGTTTCAAT
65 CAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAA
* * ** ** *
9679239 GTTGGTGCTACCGTTCATTCAAACTTACTC
130 GTTGGTCCTTCAATTCGGTCAAACTTCCTC
* *** ** * * * * * *
9679269 CATCATTATTCTCGATGTTATTTTCACAAAGTACCAATCAAAATACATAGTTCCCATTAGGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * * * *
9679334 AAGATATTGTTACTTTTGTTTACCTAAAAAAAGCATTTCTTCCATTCAATTTGTTTGGTTTCAAT
66 AAGATATTGTTGCTTTTGTTTACC-AAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAA
* * * *
9679399 GTTGGTCCTTTAACTT-GTTCAAGA-TTCTTT
130 GTTGGTCCTTCAA-TTCGGTCAA-ACTTCCTC
* * * * * * * **
9679429 CATCGTAAAATTATAAGTTCCTTTT-AAAAAATACCAAGCAAAATAGTTTGTTTCCATTATGATA
1 CATCATAAAAGTATAAGTT-CTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATA
* * ** ** ** * *
9679493 C-ATATATTGTTGATTTTGTTTATAAAAAAAAACCATTTCTATCATCCATTTTGTTTAGTTTCAA
65 CAAGATATTGTTGCTTTTGTTTA-CCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * * * ** *
9679557 AATTGGTCTTTCCATT-GGATAAAACTTAGTT
129 AGTTGGTCCTTCAATTCGG-TCAAACTTCCTC
** * * * * * * **
9679588 TGTCTTTATAA-TATATGTTCATTTCACAAAGTACTAAG-AAAATTAGATAGTTCCCATTGAAAT
1 CATC-ATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAA-TAGATAGTTACCATTGGGAT
* *** * *** *
9679651 ATAAGATATTGTTGCTTTCAATTACCAAAAAA-GAATTTCTCTTTTTCATTTTGTTTGGTTTCAT
64 ACAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
*** ** * * * *
9679715 AGTCCATCCTTCAACTT-ATTGATACTTCTTT
129 AGTTGGTCCTTCAA-TTCGGTCAAACTTCCTC
* * * * * * *
9679746 CATCGTAAAAGTATAAGTGCTTTTCATAAAGTACCAAGCAAAATAGTTTGTTACCATTGGAATAT
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* ** * *
9679811 ATGATATTGTTGCTTTTGTTTACCAAAAAAAT-CTATTTCTCCTTTTTACTTTGTTTGGTTTCAA
66 AAGATATTGTTGCTTTTGTTTACC-AAAAAATGC-ATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * * *
9679875 AGTTGATCCTTCCATTGGGTCAAACTTACTC
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * * * *
9679906 CATC-TAAAAAATCTATGTTCTTTTCACAAAGAACCATGCAAAATAGAAAGTTCCCATTGGGATA
1 CATCAT-AAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATA
* * * * * * *
9679970 TAAGACATTGTTGCTTTTGTTTACCATAAAAA-GTATTTCTCCCATTCTTTTTGCTTGATTTTAA
65 CAAGATATTGTTGCTTTTGTTTACCA-AAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
** * **
9680034 CA-TTGGTATTTCAACTCATTCAAACTTCCTC
129 -AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * * * * *
9680065 CATCATAAAAGTATAAGTTCTTTACACAATGTAACGAGCCAAATTGTTTGTTACCATTGGGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * * *
9680130 ACGATATTGTTGCTTTTGTTTACCAAAAAA--CAATTTCTCTCATTCATTTTTTTTTGGTTTGAA
66 AAGATATTGTTGCTTTTGTTTACCAAAAAATGC-ATTTCTCCCATTCA-TTTTGTTTGGTTTCAA
* * *
9680193 AGTTGATCCTTCAATTTGGTC---CAT--T-
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * *
9680218 -AT-A-AAAA-TCCAT-A-TTCTTTTCACATAGTACCAATCAAAATAGATAGTTCCCGTTGTGAT
1 CATCATAAAAGT--ATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGAT
* * * * * * * *
9680277 ATAAGATATTATTGCTTTCGTTTACTAAAAAAAGAATTTTTCTCATTCATTTTGTTTGGTTTCAA
64 ACAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * * * * * *
9680342 AGTT-GCCCTTCAACTCGTTTAAGCATCCTA
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* ** * * * **
9680372 TATTGTAAAAGCATAACTTCTTTTCACAAAGTACTAAGCAAAATAG-TTTTTACCATTGGGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * * * ** *
9680436 ACA-ATATTGTGGTTTTTATTTGCCAAAAAAACCATTTCTCACATTCATTTTGTTT-GTTTCAAA
66 A-AGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAA
* * * * **
9680499 CTTGGTCCTTCCATTAGGCCAAACTTAATC
130 GTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * *
9680529 CATCTTTAAAA-TCTAAGTTCTCTTCATAAAGTACCAAGCAAAATAGATAGTT-CCTATTGGGAT
1 CATC-ATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACC-ATTGGGAT
* * * * ** *
9680592 ACAAGATGTTGTTGTTTTTATTTACAAAAAAAAAAATATATTTCT-CCATTCATTTTCTTTGGTT
64 ACAAGATATTGTTGCTTTTGTTTAC----CAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTT
* * * * *
9680656 TCAAAGTAGGTGCTTTC-ATTCGATCCAACTTCCTT
125 TCAAAGTTGGT-CCTTCAATTCGGTCAAACTTCCTC
** * * * * ** * * ** *
9680691 CATTGTGAAACTATAAGTTATATTCACAAACCACCAAAC-AAATAGATAGTT-CCCTTCAAGACA
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATT-GGGATA
* * * *
9680754 CAAGATATTGTTGCTTTGGTTTACCAAAAAAAGTATTTCT-CCATTTCATTTTGTTTGGTTTTAA
65 CAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCA-TTCATTTTGTTTGGTTTCAA
* * * * *
9680818 AATTGGTCTTTCAACT-AGTCAAACTTCCTT
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * *** * * * *
9680848 CATCGTAAAAGTATAAGTTATTTTTGTAAAGTACGAAGCAAAATAGATTGATACCATTAGGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* *
9680913 ATGATATTCTTGCTTTTGTTTACCAAAAAAAAT-CATTTCTCCCATTCATTTTGTTTGGTTTCAA
66 AAGATATTGTTGCTTTTGTTTACC--AAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * * * *
9680977 AATTGGTCCTTCCATTCGATTAAACTTACTC
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* ** * * * ** * * *
9681008 AATTGTAAAAATCTATGTTCTTTTCATTAAGTACCAAGTAAAATAGATAGTTCCCATTAGGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * * * * *
9681073 AACATAATATTGCTTTTATTTACCAAAATAAT-CATTTGTCCCATTCATTTTATTTGGTTTCAAA
66 AAGATATTGTTGCTTTTGTTTACCAAAA-AATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAA
* * * * **
9681137 ATTGGTCCTTCCATTAGGTCAAATTTAGTC
130 GTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * * * * * * * *
9681167 TATCTTTATAA-TCTATGCTATTTTCACAAAGTACTAAGCAAACTAGATAGTTTCTATTGGGATA
1 CATC-ATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATA
* * * ** ** *
9681231 TATGATATTGTTTCTTTTGCATACCAAAAAAT-CATTTCTCCTTTTCATTTTATTT-GTTTCTAA
65 CAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTC-AA
** ** *
9681294 AGTTCATCCTTCAACTT-ATTCAAA-TTTCTGC
129 AGTTGGTCCTTCAA-TTCGGTCAAACTTCCT-C
* * * * * ** *
9681325 CATCATAAAAGTATAGGTGCTTTTCATAAAGTACCAAGCAAAATAGTTTGTTACCATTAAGATAT
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * * * ** * *
9681390 AACATATTGTTGCTTTCGTTGACAAAAAAAAAAAT-CATTTCTTGCTTTTATTTTGTTTGGTTTC
66 AAGATATTGTTGCTTTTGTTTAC----CAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTC
* * *
9681454 AAAGTAT-GTCCTTCCA-TCAAGTCAAACTTGCTC
127 AAAGT-TGGTCCTTCAATTC-GGTCAAACTTCCTC
* * * * * * * * * * * *
9681487 CATCTTAAAAATTTATGTTTTTTTCCATAAAATACCATGCAAAACAGATAGTTTCGATTGAGATA
1 CATCATAAAAGTATAAGTTCTTTT-CACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATA
* * ** *** * *
9681552 AAAGATATTCTTGCTTTCATTTACCAAAAAAAAAAATTTCTCCCTTTCTTTTTGTTTGGTTTCAA
65 CAAGATATTGTTGCTTTTGTTTACC-AAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * * *** *
9681617 ATTTAGTCCTTCAACTAATTCAAACTTCATC
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * * *
9681648 TATCATAAAAGTATAAGTTCTTTTCATAAATTACCAAGCAAAATAGTTTGTTACCAATT-AGATA
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACC-ATTGGGATA
* ** * ** **
9681712 CACA-ATATTATTATTTTTGTTTTACAAAAAAAAAAAACATTAT-TCCTTTTCATTTTGTTTGGT
65 CA-AGATATTGTTGCTTTTG-TTTAC---CAAAAAATGCATT-TCTCCCATTCATTTTGTTTGGT
** * *
9681775 TTCAAAGTTGGTCCTT-AACTT-ATTCAAACTTCTTT
124 TTCAAAGTTGGTCCTTCAA-TTCGGTCAAACTTCCTC
* * *
9681810 CATCATAAAAGTATAAGTTCTTTTCACAAAGTA-CAGAGCAAAATAGTTTGTTACCATTGTGATA
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCA-AGCAAAATAGATAGTTACCATTGGGATA
* * ** * *
9681874 CATGATATTGTTGCTTTTGTTTACAAAAAAAAAAAAAAAAAACATTTCTCCCTTTCA-TTTGCTT
65 CAAGATATTGTTGCTTTTGTTTAC---------CAAAAAATGCATTTCTCCCATTCATTTTGTTT
* * ** ** *
9681938 GGTTT-AATTA-ATGGTCCTTCAACTCAATCAAACTTTTTT
121 GGTTTCAA--AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * *
9681977 CATCATAAAAGTATAAGTTCTTTTCACAAAGCACTAAGCAAAATAAATAGTT-CTCGTT-TGATA
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTAC-CATTGGGATA
* * *
9682040 CAAGATGTTGTTGCTTTAGTTTACCAAATAAA-GCATTTCTCCCTTTCATTTTGTTTGGTTTCAA
65 CAAGATATTGTTGCTTTTGTTTACCAAA-AAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * * * *
9682104 AGTTGGTCATTCAATTTGTTTAAATTTCCTC
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * ** ** * * * *
9682135 CATCATAAATGTATAAGTTCTCTACACAATTTTACTGAGCTAAATAGTTTGTTACCATTGGGGTA
1 CATCATAAAAGTATAAGTTCTTTTCACAA-AGTACCAAGCAAAATAGATAGTTACCATTGGGATA
*** * *
9682200 TGTGATATTATTGCTTTTGTTTACCAAAAAAT-CATTTCTCCCATTCATTTTGTTTGGTTTCCAA
65 CAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAA
** **
9682264 GTTGGTCCTTCAATTCCATCAAACTTATTC
130 GTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * * * **
9682294 CATCGTAAAAATCTATGTTCTTTTCACAAAGTATCAAGCAAAATAAATAGTTGTCATTGGGATAC
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
* * * * * *
9682359 AATATAGTGTTGCTTTAGTTTACCAAAAAATGCATTTTTCTCATTCATTTTGTTTAGTTTCAAAG
66 AAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAAG
** **
9682424 TTGGTCCTTCAAGCCATTCAAACTTCCTC
131 TTGGTCCTTCAATTCGGTCAAACTTCCTC
* * *
9682453 CATCATAAAAGTATAAGTTCTTTTCATAAAGTACCAAGTAAAATAG-TATGTTACCATTAGGATA
1 CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATA-GTTACCATTGGGATA
* *** * **
9682517 CACGATATTGTCATTTTTGTTTGCCAAAAAAACCATTTCTCCCATTCATTTTGTTTGGTTTCAAA
65 CAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAA
* * * ** * *
9682582 GATGGTCTTTCCATAAGTTCAAACTTACTC
130 GTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * * * * ***
9682612 CATCTTTAAAA-TCTATGTTCTTTTCATGAAA-CACTAAGCAAAATAGAAAGTTTTTATTGGGAT
1 CATC-ATAAAAGTATAAGTTCTTTTCA-CAAAGTACCAAGCAAAATAGATAGTTACCATTGGGAT
* * *
9682675 ACAAGATATTGTTGCTTTTGTTTTTTTTTTA-AAAAAAATGC--TTCTCCCTTTCATTTGGTTTG
64 ACAAGATATTGTTGCTTTTG-------TTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTG
** * * * *
9682737 GTTTCAAAGTTGGTTTTTCAATTTGATCCAACTTCTTC
122 GTTTCAAAGTTGGTCCTTCAATTCGGTCAAACTTCCTC
** * * * * *
9682775 CATTGTAAAAGTATAAGTTC-TTTCTACAAAGCACCAAGCAAAATAGATAGTTTCCTTTAGGATG
1 CATCATAAAAGTATAAGTTCTTTTC-ACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATA
* * ** * *
9682839 C--GATATTATTGCTTTGGTTTACCAAAAAAAAACATTTCTCCCTTTCATTTTGTTTTGTTTCAA
65 CAAGATATTGTTGCTTTTGTTTACC-AAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * * *
9682902 AGTTGGTCCTTTAACTCGTTCAAGCTT-CTC
129 AGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * *
9682932 CAATCGTAAAAGTACAAGTT-TTTTCACAAAGTACAAAGCAAATATAGTTTGTTACCATTGGGAT
1 C-ATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAA-ATAGATAGTTACCATTGGGAT
* * * * * *
9682996 ACATGATCTTGCTGCTTTTGTTTACCAAAATATCCATTTCTCTCATTCATTTTGTTTGGTTTCAA
64 ACAAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAA
* * *
9683061 AGTTGGACCTTCCAA-T-GAATCAAACTTACTC
129 AGTTGGTCCTT-CAATTCG-GTCAAACTTCCTC
* * * * * * * ** *
9683092 CAAT-GTAAGAA-TCTATGTTTTTTTCATAAAATACAAAGCAAAATAGATAGTTTTCATTAGGAT
1 C-ATCATAA-AAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGAT
* * *** * *
9683155 ACAAGATATTATTACTTCCATTTACCAATAAA--CTATTTCTCCCATTCATTTTATTTGGTTTCA
64 ACAAGATATTGTTGCTTTTGTTTACCAAAAAATGC-ATTTCTCCCATTCATTTTGTTTGGTTTCA
* ** ** **
9683218 AAGTTGGTCCTTCCATTAAGTGGAACTTAGTC
128 AAGTTGGTCCTTCAATTCGGTCAAACTTCCTC
* * * * * **
9683250 CATCTTTAAA-TTTATA-TTCTTTTCACAAAGTACCAAGTAAACTAGATAGTTGTCATTGGGATA
1 CATCATAAAAGTATA-AGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATA
**
9683313 CAAGATATCATTGCTTT
65 CAAGATATTGTTGCTTT
9683330 AGCTTAAGAT
Statistics
Matches: 3389, Mismatches: 835, Indels: 309
0.75 0.18 0.07
Matches are distributed among these distances:
148 10 0.00
149 79 0.02
150 18 0.01
151 6 0.00
152 2 0.00
153 1 0.00
154 5 0.00
155 2 0.00
156 21 0.01
157 284 0.08
158 763 0.23
159 1015 0.30
160 465 0.14
161 159 0.05
162 215 0.06
163 195 0.06
164 1 0.00
165 9 0.00
166 51 0.02
167 87 0.03
168 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.40
Consensus pattern (159 bp):
CATCATAAAAGTATAAGTTCTTTTCACAAAGTACCAAGCAAAATAGATAGTTACCATTGGGATAC
AAGATATTGTTGCTTTTGTTTACCAAAAAATGCATTTCTCCCATTCATTTTGTTTGGTTTCAAAG
TTGGTCCTTCAATTCGGTCAAACTTCCTC
Found at i:9683195 original size:317 final size:315
Alignment explanation
Indices: 9678807--9683329 Score: 2814
Period size: 317 Copynumber: 14.2 Consensus size: 315
9678797 CATAAAAATT
* * * * *
9678807 TAAGTTTTTTTCACAAAATACCAAGC-AAATAGTTTGTTACCATTGAGATACACGACATTGTTGC
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTGC
* * * * *
9678871 TTTTGTTTACCAAAAAATGCATTTCTCCCTTTCATTTTGTTTGATTTCAAAGTTAGTCCTTCCAT
66 TTTTGTTTACCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCAA
* * * * ** * *
9678936 TCG-GTCCAACTTCCTCCATCATAAAAGTATAAGCTCTTTTTGCAAAGCACTAAGCAAAATAGAT
131 T-GAGTCAAACTTACTCCATCATAAAA-TATATGTTCTTTTCACAAAGTACCAAGCAAAATAGAT
* * * **
9679000 AG-GTCCATTGGGATACAAGATATTGTTGCTTTGGTTTACCAAAAAAAGC-ATTTCTCCGTTTCA
194 AGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACC-AAAAAA-CTATTTCTCCCATTCA
* * * * * *
9679063 TTTTGTTTGGCTTCAAAGTTGGTCATTCAATTCATTCAAACTTTTTCTATCATAAAAGTA
257 TTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAAC-TTCTCCATCGTAAAAGTA
* * * * *
9679123 TAAGTTCTTTTCACAAAGTA-CATAGCAAAATAGTTTGTTACCATTAGGATATATGATATTATTA
1 TAAGTTCTTTTCACAAAGTACCA-AGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTG
* * * * * *
9679187 CTTTTGTTTACCAAAAAATCCATTTCCCCCATTGATTTTGTTTGGTTTCAATGTTGGTGCTACCG
65 CTTTTGTTTACCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCA
* * * * * * * * *
9679252 TTCATTCAAACTTACTCCATCAT-TATTCTCGATGTTATTTTCACAAAGTACCAATCAAAATACA
130 ATGAGTCAAACTTACTCCATCATAAAATAT--ATGTTCTTTTCACAAAGTACCAAGCAAAATAGA
* * *
9679316 TAGTTCCCATTAGGATACAAGATATTGTTACTTTTGTTTACCTAAAAAAAGC-ATTTCTTCCATT
193 TAGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACC--AAAAAA-CTATTTCTCCCATT
* * * ** * *
9679380 CAATTTGTTTGGTTTCAATGTTGGTCCTTTAACTTGTTCAAGA-TTCTTTCATCGTAAAATTA
255 CATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAA-ACTTC-TCCATCGTAAAAGTA
* * * ** *
9679442 TAAGTTCCTTTT-AAAAAATACCAAGCAAAATAGTTTGTTTCCATTATGATAC-ATATATTGTTG
1 TAAGTT-CTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTG
* ** * ** * * * *
9679505 ATTTTGTTTATAAAAAAAAACCATTTCTATCATCCATTTTGTTTAGTTTCAAAATTGGTCTTTCC
65 CTTTTGTTTA-CCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCC
* * * *** * * * *
9679570 ATTG-GATAAAACTTAGTTTGTCTTTATAATATATGTTCATTTCACAAAGTACTAAG-AAAATTA
129 AATGAG-TCAAACTTACTCCATC-ATAAAATATATGTTCTTTTCACAAAGTACCAAGCAAAA-TA
* * * *** ** ***
9679633 GATAGTTCCCATT-GAAATATAAGATATTGTTGCTTTCAATTACCAAAAAAGAATTTCTCTTTTT
191 GATAGTTTCCATTAG-GATACAAGATATTGTTGCTTTTGTTTACCAAAAAACTATTTCTCCCATT
* *** * * * *
9679697 CATTTTGTTTGGTTTCATAGTCCATCCTTCAACTTATTGATACTTCTTTCATCGTAAAAGTA
255 CATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTC-TCCATCGTAAAAGTA
* * * * *
9679759 TAAGTGCTTTTCATAAAGTACCAAGCAAAATAGTTTGTTACCATTGGAATATATGATATTGTTGC
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTGC
* ** * * *
9679824 TTTTGTTTACCAAAAAAATCTATTTCTCCTTTTTACTTTGTTTGGTTTCAAAGTTGATCCTTCCA
66 TTTTGTTTACC-AAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCA
* * * * * * *
9679889 TTGGGTCAAACTTACTCCATCTAAAAAATCTATGTTCTTTTCACAAAGAACCATGCAAAATAGAA
130 ATGAGTCAAACTTACTCCATC-ATAAAATATATGTTCTTTTCACAAAGTACCAAGCAAAATAGAT
* * * * * *
9679954 AGTTCCCATTGGGATATAAGACATTGTTGCTTTTGTTTACCATAAAAAGTATTTCTCCCATTCTT
194 AGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACCA-AAAAACTATTTCTCCCATTCAT
* * * ** *
9680019 TTTGCTTGATTTTAACA-TTGGTATTTCAACTCATTCAAACTTCCTCCATCATAAAAGTA
258 TTTGTTTGGTTTCAA-AGTTGGTCCTTCAACTCATTCAAACTT-CTCCATCGTAAAAGTA
* * * * * * *
9680078 TAAGTTCTTTACACAATGTAACGAGCCAAATTGTTTGTTACCATTGGGATACACGATATTGTTGC
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTGC
* * * * *
9680143 TTTTGTTTACCAAAAAA-CAATTTCTCTCATTCATTTTTTTTTGGTTTGAAAGTTGATCCTT-CA
66 TTTTGTTTACCAAAAAATCCATTTCTCCCATTCA-TTTTGTTTGGTTTCAAAGTTGGTCCTTCCA
* ** * * *
9680206 ATTTG-GTC---C--A-T-TAT-A-AAAATCCATATTCTTTTCACATAGTACCAATCAAAATAGA
130 A--TGAGTCAAACTTACTCCATCATAAAATATATGTTCTTTTCACAAAGTACCAAGCAAAATAGA
* * * * * * ** * *
9680261 TAGTTCCCGTT-GTGATATAAGATATTATTGCTTTCGTTTACTAAAAAAAGAATTTTTCTCATTC
193 TAGTTTCCATTAG-GATACAAGATATTGTTGCTTTTGTTTAC-CAAAAAACTATTTCTCCCATTC
* * * * * ** * *
9680325 ATTTTGTTTGGTTTCAAAGTT-GCCCTTCAACTCGTTTAAGCATCCTATATTGTAAAAGCA
256 ATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAAC-TTCTCCATCGTAAAAGTA
* * *
9680385 TAACTTCTTTTCACAAAGTACTAAGCAAAATAGTTT-TTACCATTGGGATACACA-ATATTGTGG
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACA-AGATATTGTTG
* * * * * *
9680448 TTTTTATTTGCCAAAAAAACCATTTCTCACATTCATTTTGTTT-GTTTCAAACTTGGTCCTTCC-
65 CTTTTGTTTACCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCA
* * * * * * * *
9680511 ATTAGGCCAAACTTAATCCATCTTTAAAATCTAAGTTCTCTTCATAAAGTACCAAGCAAAATAGA
130 ATGA-GTCAAACTTACTCCATC-ATAAAATATATGTTCTTTTCACAAAGTACCAAGCAAAATAGA
* * * * * *
9680576 TAG-TTCCTATTGGGATACAAGATGTTGTTGTTTTTATTTACAAAAAAAAAAATATATT-TCTCC
193 TAGTTTCC-ATTAGGATACAAGATATTGTTGCTTTTGTTTAC---CAAAAAACTAT-TTCTC-CC
* * * * * * * * *
9680639 ATTCATTTTCTTTGGTTTCAAAGTAGGTGCTTTC-ATTCGA-TCCAACTTCCTTCATTGTGAAAC
252 ATTCATTTTGTTTGGTTTCAAAGTTGGT-CCTTCAACTC-ATTCAAACTT-CTCCATCGTAAAAG
9680702 TA
314 TA
* * ** * * * * ** *
9680704 TAAGTTATATTCACAAACCACCAAAC-AAATAGATAGTT-CCCTTCAAGACACAAGATATTGTTG
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATT-GGGATACAAGATATTGTTG
* *** * * *
9680767 CTTTGGTTTACCAAAAAAAGTATTTCT-CCATTTCATTTTGTTTGGTTTTAAAATTGGT-CTTTC
65 CTTTTGTTTACCAAAAAATCCATTTCTCCCA-TTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCC
* * * * * *** *
9680830 AACT-AGTCAAACTTCCTTCATCGTAAAAGTATAAGTTATTTTTGTAAAGTACGAAGCAAAATAG
129 AA-TGAGTCAAACTTACTCCATCATAAAA-TATATGTTCTTTTCACAAAGTACCAAGCAAAATAG
* * * * * *
9680894 ATTGATACCATTAGGATACATGATATTCTTGCTTTTGTTTACCAAAAAAAATCATTTCTCCCATT
192 ATAGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACC-AAAAAACT-ATTTCTCCCATT
* * * * * * *
9680959 CATTTTGTTTGGTTTCAAAATTGGTCCTTCCATTCGATT-AAACTTACTCAATTGTAAAAATC
255 CATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTC-ATTCAAACTT-CTCCATCGTAAAAGTA
* ** * * * * * * * *
9681021 TATGTTCTTTTCATTAAGTACCAAGTAAAATAGATAGTTCCCATTAGGATACAACATAATATTGC
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTGC
* * * *
9681086 TTTTATTTACCAAAATAAT-CATTTGTCCCATTCATTTTATTTGGTTTCAAAATTGGTCCTTCC-
66 TTTTGTTTACCAAAA-AATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCA
* * * * * * * * * * *
9681149 ATTAGGTCAAATTTAGTCTATCTTTATAATCTATGCTATTTTCACAAAGTACTAAGCAAACTAGA
130 ATGA-GTCAAACTTACTCCATC-ATAAAATATATGTTCTTTTCACAAAGTACCAAGCAAAATAGA
* * * * * ** **
9681214 TAGTTTCTATTGGGATATATGATATTGTTTCTTTTGCATACCAAAAAA-TCATTTCTCCTTTTCA
193 TAGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAACT-ATTTCTCCCATTCA
* ** * * *
9681278 TTTTATTT-GTTTCTAAAGTTCATCCTTCAACTTATTCAAATTTCTGCCATCATAAAAGTA
257 TTTTGTTTGGTTTC-AAAGTTGGTCCTTCAACTCATTCAAACTTCT-CCATCGTAAAAGTA
* * * ** * *
9681338 TAGGTGCTTTTCATAAAGTACCAAGCAAAATAGTTTGTTACCATTAAGATATAACATATTGTTGC
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTGC
* * * ** * *
9681403 TTTCGTTGACAAAAAAAAAAAT-CATTTCTTGCTTTTATTTTGTTTGGTTTCAAAGTAT-GTCCT
66 TTTTGTTTAC----CAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGT-TGGTCCT
* * * * * * * *
9681466 TCC-ATCAAGTCAAACTTGCTCCATCTTAAAAATTTATGTTTTTTTCCATAAAATACCATGCAAA
126 TCCAAT-GAGTCAAACTTACTCCATCAT-AAAATATATGTTCTTTT-CACAAAGTACCAAGCAAA
* * * * ** **
9681530 ACAGATAGTTTCGATT-GAGATAAAAGATATTCTTGCTTTCATTTACCAAAAAAAAAAATTTCTC
188 ATAGATAGTTTCCATTAG-GATACAAGATATTGTTGCTTTTGTTTACC--AAAAAACTATTTCTC
* * * * * * *
9681594 CCTTTCTTTTTGTTTGGTTTCAAATTTAGTCCTTCAACTAATTCAAACTTCATCTATCATAAAAG
250 CCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTC-TCCATCGTAAAAG
9681659 TA
314 TA
* * * *
9681661 TAAGTTCTTTTCATAAATTACCAAGCAAAATAGTTTGTTACCAATT-AGATACACA-ATATTATT
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACC-ATTGGGATACA-AGATATTGTT
** * ** **
9681724 ATTTTTGTTTTACAAAAAAAAAAAACATTAT-TCCTTTTCATTTTGTTTGGTTTCAAAGTTGGTC
64 GCTTTTG-TTTAC---CAAAAAATCCATT-TCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTC
* * * *
9681788 CTT--AACTTATTCAAACTT-CTTTCATCATAAAAGTATAAGTTCTTTTCACAAAGTA-CAGAGC
124 CTTCCAA-TGAGTCAAACTTAC-TCCATCATAAAA-TATATGTTCTTTTCACAAAGTACCA-AGC
* * * * *
9681849 AAAATAGTTTGTTACCATT-GTGATACATGATATTGTTGCTTTTGTTTACAAAAAAAAAAAAAAA
185 AAAATAGATAGTTTCCATTAG-GATACAAGATATTGTTGCTTTTGTTTAC-----------CAAA
* * * *
9681913 AAAC-ATTTCTCCCTTTCA-TTTGCTTGGTTT-AATTA-ATGGTCCTTCAACTCAATCAAACTTT
238 AAACTATTTCTCCCATTCATTTTGTTTGGTTTCAA--AGTTGGTCCTTCAACTCATTCAAAC-TT
* * *
9681974 TTTCATCATAAAAGTA
300 CTCCATCGTAAAAGTA
* * ** * * * *
9681990 TAAGTTCTTTTCACAAAGCACTAAGCAAAATAAATAGTT-CTCGTT-TGATACAAGATGTTGTTG
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTAC-CATTGGGATACAAGATATTGTTG
* * * *
9682053 CTTTAGTTTACCAAATAAA-GCATTTCTCCCTTTCATTTTGTTTGGTTTCAAAGTTGGTCATT-C
65 CTTTTGTTTACCAAA-AAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCC
** * * * * * * * ** ** *
9682116 AATTTGTTTAAATTTCCTCCATCATAAATGTATAAGTTCTCTACACAATTTTACTGAGCTAAATA
129 AATGAG-TCAAACTTACTCCATCATAAA-ATATATGTTCTTTTCACAA-AGTACCAAGCAAAATA
* * * * * *** *
9682181 GTTTGTTACCATTGGGGTATGTGATATTATTGCTTTTGTTTACCAAAAAA-TCATTTCTCCCATT
191 GATAGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAACT-ATTTCTCCCATT
* * * * *
9682245 CATTTTGTTTGGTTTCCAAGTTGGTCCTTCAATTCCA-TCAAACTTATTCCATCGTAAAAATC
255 CATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACT-CATTCAAACTT-CTCCATCGTAAAAGTA
* * ** * ** * *
9682307 TATGTTCTTTTCACAAAGTATCAAGCAAAATAAATAGTTGTCATTGGGATACAATATAGTGTTGC
1 TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTGC
* * * * *
9682372 TTTAGTTTACCAAAAAATGCATTTTTCTCATTCATTTTGTTTAGTTTCAAAGTTGGTCCTT-CAA
66 TTTTGTTTACCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCAA
* * * * *
9682436 -GCCATTCAAACTTCCTCCATCATAAAAGTATAAGTTCTTTTCATAAAGTACCAAGTAAAATAG-
131 TG--AGTCAAACTTACTCCATCATAAAA-TATATGTTCTTTTCACAAAGTACCAAGCAAAATAGA
* * *** * *
9682499 TATGTTACCATTAGGATACACGATATTGTCATTTTTGTTTGCCAAAAAAACCATTTCTCCCATTC
193 TA-GTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACC-AAAAAACTATTTCTCCCATTC
* * * * * *
9682564 ATTTTGTTTGGTTTCAAAGATGGTCTTTCCA-TAAGTTCAAACTTACTCCATCTTTAAAA-TC
256 ATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCA-TTCAAACTT-CTCCATC-GTAAAAGTA
* * * * *** ***
9682625 TATGTTCTTTTCATGAAA-CACTAAGCAAAATAGAAAGTTTTTATTGGGATACAAGATATTGTTG
1 TAAGTTCTTTTCA-CAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTG
* * * *
9682689 CTTTTGTTTTTTTTTTA-AAAAAAATGC--TTCTCCCTTTCATTTGGTTTGGTTTCAAAGTTGGT
65 CTTTTG-------TTTACCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGT
* * * ** * *
9682751 -TTTTCAATTTGA-TCCAACTT-CTTCCATTGTAAAAGTATAAGTTC-TTTCTACAAAGCACCAA
123 CCTTCCAA--TGAGTCAAACTTAC-TCCATCATAAAA-TATATGTTCTTTTC-ACAAAGTACCAA
* * * *
9682812 GCAAAATAGATAGTTTCCTTTAGGATGC--GATATTATTGCTTTGGTTTACCAAAAAAAAAC-AT
183 GCAAAATAGATAGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACC---AAAAAACTAT
* * * * *
9682874 TTCTCCCTTTCATTTTGTTTTGTTTCAAAGTTGGTCCTTTAACTCGTTCAAGCTTCTCCAATCGT
245 TTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTCTCC-ATCGT
9682939 AAAAGTA
309 AAAAGTA
* * * * *
9682946 CAAGTT-TTTTCACAAAGTACAAAGCAAATATAGTTTGTTACCATTGGGATACATGATCTTGCTG
1 TAAGTTCTTTTCACAAAGTACCAAGCAAA-ATAGTTTGTTACCATTGGGATACAAGATATTGTTG
* * *
9683010 CTTTTGTTTACCAAAATATCCATTTCTCTCATTCATTTTGTTTGGTTTCAAAGTTGGACCTTCCA
65 CTTTTGTTTACCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCA
* * * * * * *
9683075 ATGAATCAAACTTACTCCAAT-GTAAGAATCTATGTTTTTTTCATAAAATACAAAGCAAAATAGA
130 ATGAGTCAAACTTACTCC-ATCATAA-AATATATGTTCTTTTCACAAAGTACCAAGCAAAATAGA
* * * *** *
9683139 TAGTTTTCATTAGGATACAAGATATTATTACTTCCATTTACCAATAAACTATTTCTCCCATTCAT
193 TAGTTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAACTATTTCTCCCATTCAT
* * * * * ** * * * *
9683204 TTTATTTGGTTTCAAAGTTGGTCCTTCCATTAAGTGGAACTTAGTCCATCTTTAAA-TT
258 TTTGTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTT-CTCCATCGTAAAAGTA
* * * * ** **
9683262 TATA-TTCTTTTCACAAAGTACCAAGTAAACTAGATAGTTGTCATTGGGATACAAGATATCATTG
1 TA-AGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTG
9683326 CTTT
65 CTTT
9683330 AGCTTAAGAT
Statistics
Matches: 3299, Mismatches: 717, Indels: 382
0.75 0.16 0.09
Matches are distributed among these distances:
303 1 0.00
305 18 0.01
306 47 0.01
307 69 0.02
308 102 0.03
309 2 0.00
310 1 0.00
311 3 0.00
312 3 0.00
313 1 0.00
314 7 0.00
315 78 0.02
316 103 0.03
317 722 0.22
318 597 0.18
319 618 0.19
320 143 0.04
321 154 0.05
322 152 0.05
323 160 0.05
324 101 0.03
325 43 0.01
326 48 0.01
327 7 0.00
328 21 0.01
329 76 0.02
330 16 0.00
331 6 0.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (315 bp):
TAAGTTCTTTTCACAAAGTACCAAGCAAAATAGTTTGTTACCATTGGGATACAAGATATTGTTGC
TTTTGTTTACCAAAAAATCCATTTCTCCCATTCATTTTGTTTGGTTTCAAAGTTGGTCCTTCCAA
TGAGTCAAACTTACTCCATCATAAAATATATGTTCTTTTCACAAAGTACCAAGCAAAATAGATAG
TTTCCATTAGGATACAAGATATTGTTGCTTTTGTTTACCAAAAAACTATTTCTCCCATTCATTTT
GTTTGGTTTCAAAGTTGGTCCTTCAACTCATTCAAACTTCTCCATCGTAAAAGTA
Found at i:9688402 original size:320 final size:317
Alignment explanation
Indices: 9687737--9688993 Score: 1025
Period size: 320 Copynumber: 3.9 Consensus size: 317
9687727 CATTAAATGC
** * * * * * * *
9687737 AGTTGCAACTTATGTGTGTTTAGGACTTTTTATGCTGTCAAAAGGTAAAACTATAAATTTGCAAT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTC-AAAGGCAAAACAATAATTTTACAAT
* * * * *
9687802 TATATTTTTATTTTAATAGTTTAGATAGCTCAAATACATGATATTAAACATGTTTGAATATTTGG
65 TATATTTTTATTTTAATAATTTAGATAGCTCAAATACATGATATTAAACTTGTCTGAATGTTTGA
* * ** *
9687867 ACTTGGTTTCCAA-ACTTGCTATGTGTGAA-AAGGTTGA-AGTTTATGTCTATTTAAGATTTTTT
130 ACTTGATTT-CAATACTTGATATGCATGAATAA-GTT-ACAGTTTATG--TATTTAAGACTTTTT
* ** * * * ** * *
9687929 GTACCGTCAAAAGGG-AAAAATGCAAAATTGCAGTTACATTTTTGTTTCCATAGTTTAGATGGCT
190 ATACCGTC-AAAGGGCAAAAATGCAATTTTGTAGTTATATTTCTGTTTTAACAGTTTAGATAGCT
* * * * * * *
9687993 ACAATACATGATATTAAACTTGTTTGAATGTTTGAACTTGGTTGCTACACTTGATATGCATGAAT
254 CCAATACATGATATTAAACTTATCTAAATCTTTGAACTTGGTTCCT--GCTTGATATGCATGAAT
9688058 A
317 A
** * *
9688059 AGTTGTGTTTTATGTGCGTTTAAGACTTTTTGTGCCGTCAAAAGGCAAAA-AAGTAACTTTACAA
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTC-AAAGGCAAAACAA-TAATTTTACAA
* * * * *
9688123 TTATATTTTTGTTTTAATAATTTAGATAGATCAAATACATGATATTATACTTGCCTAAATGTTTG
64 TTATATTTTTATTTTAATAATTTAGATAGCTCAAATACATGATATTAAACTTGTCTGAATGTTTG
* ** * * *
9688188 AATTTGATTGT-AACGCTTGATATGCATGAATAAGTTACATTTTATGTGTTTAAGACTTTCTATA
129 AACTTGATT-TCAATACTTGATATGCATGAATAAGTTACAGTTTATGTATTTAAGACTTTTTATA
* * * *
9688252 CTGTCAAGGGGCAAAAATGCAATTTAGTAGTTATATTTCTGTTTTAACAGTTTAGTTAGCTCCAA
193 CCGTCAAAGGGCAAAAATGCAATTTTGTAGTTATATTTCTGTTTTAACAGTTTAGATAGCTCCAA
*
9688317 TACATGATATTAAACTTATCTAAATCTTTGAATTTGGTATCCGTGCTTGATATGCATGAATA
258 TACATGATATTAAACTTATCTAAATCTTTGAACTTGGT-TCC-TGCTTGATATGCATGAATA
* * * ** *
9688379 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGGAAAATAATATTTTTGTAGTT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGCAAAACAATAATTTTACAATT
* * * * *
9688444 ATATTTCTATTTTAATAGTTTAGATAGCTCTAATACATGATATTAAACTTGTTTGAATGTTTAAA
66 ATATTTTTATTTTAATAATTTAGATAGCTCAAATACATGATATTAAACTTGTCTGAATGTTTGAA
*** * * * * *
9688509 CGCCATTTCCATACTTGATATGCATAAATAAGTTAC-GTTTTATATGTGTTTAGGACTTTTTAGG
131 CTTGATTTCAATACTTGATATGCATGAATAAGTTACAG--TT-TATGTATTTAAGACTTTTTA-T
* * ** * * *
9688573 A-CATCAAAAGGCAAAAATGTTATTTTGTAGTTATA-TTCTGTTTTAATAATTTAGATAGTTCCA
192 ACCGTCAAAGGGCAAAAATGCAATTTTGTAGTTATATTTCTGTTTTAACAGTTTAGATAGCTCCA
* * * * * * * **
9688636 AAATAGGATATTAAACATGTCTAAATCATTGAACTTGGTTTTCAC-GCATGATATGTGTGAA-A
257 ATACATGATATTAAACTTATCTAAATCTTTGAACTTGG--TTC-CTGCTTGATATGCATGAATA
* * * * * * * *
9688698 AGCTGTAGTTTATGTCTGTTTATA-AATTTTTGTGCCATCAAAGGACAAAA-ATGTAGTTTTACA
1 AGTTGCATTTTATGTGTGTTTA-AGACTTTTTGTGCCGTCAAAGG-CAAAACA-ATAATTTTACA
* * * * * *
9688761 GTTATATTTCTT-TTTTAACAATTTAGATAGGTCCAATACATAATATTAAACTTGTCTGAATGAT
63 ATTATATTT-TTATTTTAATAATTTAGATAGCTCAAATACATGATATTAAACTTGTCTGAATGTT
* * ** * * * * * *
9688825 TGAACTTGGTTTTC-ATGCTTGATATGTGTGAAAAAGTT-GAGTTTGTCTATTTATGACTTTTTG
127 TGAACTT-GATTTCAATACTTGATATGCATGAATAAGTTACAGTTTATGTATTTAAGACTTTTTA
* * * * * * *
9688888 TGCCGTTAAACGGCAAAAATGTAATTTTGTAGTTGTATTTCTATTTTAACAGTTTAGATAGCTCT
191 TACCGTCAAAGGGCAAAAATGCAATTTTGTAGTTATATTTCTGTTTTAACAGTTTAGATAGCTCC
* ** **
9688953 AATACATGATATTAAATTTATCCGAATGATTGAACTTGGTT
256 AATACATGATATTAAACTTATCTAAATCTTTGAACTTGGTT
9688994 TTCACACTAG
Statistics
Matches: 748, Mismatches: 162, Indels: 56
0.77 0.17 0.06
Matches are distributed among these distances:
316 2 0.00
317 44 0.06
318 55 0.07
319 141 0.19
320 307 0.41
321 58 0.08
322 138 0.18
323 3 0.00
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (317 bp):
AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGCAAAACAATAATTTTACAATT
ATATTTTTATTTTAATAATTTAGATAGCTCAAATACATGATATTAAACTTGTCTGAATGTTTGAA
CTTGATTTCAATACTTGATATGCATGAATAAGTTACAGTTTATGTATTTAAGACTTTTTATACCG
TCAAAGGGCAAAAATGCAATTTTGTAGTTATATTTCTGTTTTAACAGTTTAGATAGCTCCAATAC
ATGATATTAAACTTATCTAAATCTTTGAACTTGGTTCCTGCTTGATATGCATGAATA
Found at i:9688528 original size:160 final size:159
Alignment explanation
Indices: 9687737--9689080 Score: 945
Period size: 161 Copynumber: 8.4 Consensus size: 159
9687727 CATTAAATGC
** * * * * * * *
9687737 AGTTGCAACTTATGTGTGTTTAGGACTTTTTATGCTGTCAAAAGGTAAAACTATAAATTTGCAAT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTC-AAAGGGAAAA-AATAATTTTGCAGT
* * * * * * *
9687802 TATATTTTTATTTTAATAGTTTAGATAGCTCAAATACATGATATTAAACATGTTTGAATATTTGG
64 TATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTTGA
** * **
9687867 ACTTGGTTTCCAAACTTGCTATGTGTGAA-A
129 ACTTGGTTTCCACGCTTGATATGCATGAATA
* * * * * * **
9687897 AGGTTGAAGTTTATGTCTATTTAAGATTTTTTGTACCGTCAAAAGGG-AAAAATGCAAAATTGCA
1 A-GTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTC-AAAGGGAAAAAAT--AATTTTGCA
* * ** * * *
9687961 GTTACATTTTTGTTTCCATAGTTTAGATGGCTACAATACATGATATTAAACTTGTTTGAATGTTT
62 GTTATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTT
* * *
9688026 GAACTTGGTTGCTACACTTGATATGCATGAATA
127 GAACTTGGTTTCCACGCTTGATATGCATGAATA
** * * * * *
9688059 AGTTGTGTTTTATGTGCGTTTAAGACTTTTTGTGCCGTCAAAAGGCAAAAAAGTAACTTTACAAT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTC-AAAGGGAAAAAA-TAATTTTGCAGT
* * * * * * *
9688124 TATATTTTTGTTTTAATAATTTAGATAGATCAAATACATGATATTATACTTGCCTAAATGTTTGA
64 TATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTTGA
* * *
9688189 ATTTGATTGT-AACGCTTGATATGCATGAATA
129 ACTTGGTT-TCCACGCTTGATATGCATGAATA
* * * * * * * * *
9688220 AGTTACATTTTA--TGTGTTTAAGACTTTCTATACTGTCAAGGGGCAAAAATGCAATTTAGTAGT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGGAAAAAAT--AATTTTGCAGT
* * * * *
9688283 TATATTTCTGTTTTAACAGTTTAGTTAGCTCCAATACATGATATTAAACTTATCTAAATCTTTGA
64 TATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTTGA
* * **
9688348 ATTTGGTATCCGTGCTTGATATGCATGAATA
129 ACTTGGTTTCCACGCTTGATATGCATGAATA
* *
9688379 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGGAAAATAATATTTTTGTAGTT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGGAAAA-AATAATTTTGCAGTT
* * * *
9688444 ATATTTCTATTTTAATAGTTTAGATAGCTCTAATACATGATATTAAACTTGTTTGAATGTTTAAA
65 ATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTTGAA
**** ** *
9688509 CGCCATTTCCATACTTGATATGCATAAATA
130 CTTGGTTTCCACGCTTGATATGCATGAATA
* * * * * * * * * *
9688539 AGTTACGTTTTATATGTGTTTAGGACTTTTTAG-GACATCAAAAGGCAAAAATGTTATTTTGTAG
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTT-GTGCCGTC-AAAGGGAAAAA-ATAATTTTGCAG
* * * * * * * **
9688603 TTATA-TTCTGTTTTAATAATTTAGATAGTTCCAAAATAGGATATTAAACATGTCTAAATCATTG
63 TTATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTTG
* * **
9688667 AACTTGGTTTTCACGCATGATATGTGTGAA-A
128 AACTTGGTTTCCACGCTTGATATGCATGAATA
* * * * * * * *
9688698 AGCTGTAGTTTATGTCTGTTTATA-AATTTTTGTGCCATCAAA-GGACAAAAATGTAGTTTTACA
1 AGTTGCATTTTATGTGTGTTTA-AGACTTTTTGTGCCGTCAAAGGGA-AAAAA--TAATTTTGCA
* * * * * *
9688761 GTTATATTTCTTTTTTAACAATTTAGATAGGTCCAATACATAATATTAAACTTGTCTGAATGATT
62 GTTATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTT
* * ** *
9688826 GAACTTGGTTTTCATGCTTGATATGTGTGAAAA
127 GAACTTGGTTTCCACGCTTGATATGCATGAATA
* * * * * * * *
9688859 AGTTG-A-GTT-TGTCTATTTATGACTTTTTGTGCCGTTAAACGGCAAAAATGTAATTTTGTAGT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAA-GGGAAAAA-ATAATTTTGCAGT
* * * * * * * *
9688921 TGTATTTCTATTTTAACAGTTTAGATAGCTCTAATACATGATATTAAATTTATCCGAATGATTGA
64 TATATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTTGA
* * * ** *
9688986 ACTTGGTTTTCACACTAGATATGTGTGCA-A
129 ACTTGGTTTCCACGCTTGATATGCATGAATA
* * * * * * * *
9689016 AGTTGTAGTTTGTGTTTGTTTAGGACTTTTTGTGCCATC-AAGGGTAAAAATGTAATTTTACAGT
1 AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGG-AAAAA-ATAATTTTGCAGT
9689080 T
64 T
9689081 TGAATACATA
Statistics
Matches: 939, Mismatches: 214, Indels: 63
0.77 0.18 0.05
Matches are distributed among these distances:
157 9 0.01
158 135 0.14
159 185 0.20
160 290 0.31
161 309 0.33
162 10 0.01
163 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (159 bp):
AGTTGCATTTTATGTGTGTTTAAGACTTTTTGTGCCGTCAAAGGGAAAAAATAATTTTGCAGTTA
TATTTCTGTTTTAATAGTTTAGATAGCTCCAATACATGATATTAAACTTGTCTGAATGTTTGAAC
TTGGTTTCCACGCTTGATATGCATGAATA
Found at i:9688749 original size:480 final size:478
Alignment explanation
Indices: 9687801--9688968 Score: 1123
Period size: 480 Copynumber: 2.4 Consensus size: 478
9687791 AAATTTGCAA
* * * * * * * * * *
9687801 TTATATTTTTATTTTAATAGTTTAGATAGCTCAAATACATGATATTAAACATGTTTGAAT-ATTT
1 TTATATTTCTGTTTTAACAATTTAGATAGCTCCAATACATAATATTAAACTTATCTAAATCA-TT
* * ** * ** * *
9687865 GGACTTGGTTTCCAAACTTGCTATGTGTGAAAAGGTTGAAGTTTATGTCTATTTAAGATTTTTTG
65 GAACTTGGTATCCATGCTTGATATGCATGAAAAAGTTG-AG-TT-TGTCTATTTAAGACTTTTTG
* * * ** ** * * * * ** *
9687930 TACCGTCAAAAGGGAAAAATGCAAAATTGCAGTTACATTTTTGTTTCCATAGTTTAGATGGCTAC
127 TGCCGTCAAACGGCAAAAATATAATTTTGTAGTTATATTTCTATTTTAATAGTTTAGATAGCT-C
* **** * *
9687995 -AATACATGATATTAAACTTGTTTGAATGTTTGAACTTGGTTGCTACACTTGATATGCATGAATA
191 TAATACATGATATTAAACTTGTTTGAATGTTTAAACGCCATTGCCACACTTGATATGCATAAATA
** * * *
9688059 AGTTGTGTTTTATGTGCGTTTAAGACTTTTTGTGCCGTCAAAAGGCAAAAAAGTAACTTTACAAT
256 AGTTACGTTTTATATGCGTTTAAGACTTTTTGTGACATCAAAAGGCAAAAAAGTAACTTTACAAT
* * * * **
9688124 TATATTTTTGTTTTAATAATTTAGATAGATCAAATACATGATATTATACTTGCCTAAATGTTTGA
321 TATATTTCTGTTTTAATAATTTAGATAGATCAAATACAGGATATTAAACATGCCTAAATCATTGA
* * * * * *
9688189 ATTTGATTGTAACGCTTGATATGCATGAATAAGTTACATTTTATGTGTTTAAGACTTTCTATACT
386 ACTTGATTGTAACGCATGATATGCATGAATAAGCTACAGTTTATGTGTTTAAGAATTTCTATACC
* * * *
9688254 GTCAAGGGGCAAAAATGCA-ATTTAGTAG
451 ATCAAAGGACAAAAATGCAGATTTA-CAG
* * * *
9688282 TTATATTTCTGTTTTAACAGTTTAGTTAGCTCCAATACATGATATTAAACTTATCTAAATCTTTG
1 TTATATTTCTGTTTTAACAATTTAGATAGCTCCAATACATAATATTAAACTTATCTAAATCATTG
* * * * * *
9688347 AATTTGGTATCCGTGCTTGATATGCATGAATAAGTTGCATTTTATGTGTGTTTAAGACTTTTTGT
66 AACTTGGTATCCATGCTTGATATGCATGAAAAAGTTG-A-GTT-TGTCTATTTAAGACTTTTTGT
* *
9688412 GCCGTCAAA-GG-GAAAATAATATTTTTGTAGTTATATTTCTATTTTAATAGTTTAGATAGCTCT
128 GCCGTCAAACGGCAAAAAT-ATAATTTTGTAGTTATATTTCTATTTTAATAGTTTAGATAGCTCT
* *
9688475 AATACATGATATTAAACTTGTTTGAATGTTTAAACGCCATTTCCATACTTGATATGCATAAATAA
192 AATACATGATATTAAACTTGTTTGAATGTTTAAACGCCATTGCCACACTTGATATGCATAAATAA
* * * * * ** *
9688540 GTTACGTTTTATATGTGTTTAGGACTTTTTAG-GACATCAAAAGGCAAAAATGTTATTTTGTAGT
257 GTTACGTTTTATATGCGTTTAAGACTTTTT-GTGACATCAAAAGGCAAAAAAGTAACTTTACAAT
* * *
9688604 TATA-TTCTGTTTTAATAATTTAGATAGTTCCAAA-ATAGGATATTAAACATGTCTAAATCATTG
321 TATATTTCTGTTTTAATAATTTAGATAGAT-CAAATACAGGATATTAAACATGCCTAAATCATTG
* * * ** ** * *
9688667 AACTTGGTTTTCACGCATGATATGTGTGAA-AAGCTGTAGTTTATGTCTGTTTATA-AATTTTTG
385 AACTTGATTGTAACGCATGATATGCATGAATAAGCTACAGTTTATG--TGTTTA-AGAATTTCTA
* * *
9688730 TGCCATCAAAGGACAAAAATGTAGTTTTACAG
447 TACCATCAAAGGACAAAAATGCAGATTTACAG
* * * * *
9688762 TTATATTTCTTTTTTAACAATTTAGATAGGTCCAATACATAATATTAAACTTGTCTGAATGATTG
1 TTATATTTCTGTTTTAACAATTTAGATAGCTCCAATACATAATATTAAACTTATCTAAATCATTG
* * ** *
9688827 AACTTGGTTTTCATGCTTGATATGTGTGAAAAAGTTGAGTTTGTCTATTTATGACTTTTTGTGCC
66 AACTTGGTATCCATGCTTGATATGCATGAAAAAGTTGAGTTTGTCTATTTAAGACTTTTTGTGCC
* * * *
9688892 GTTAAACGGCAAAAATGTAATTTTGTAGTTGTATTTCTATTTTAACAGTTTAGATAGCTCTAATA
131 GTCAAACGGCAAAAATATAATTTTGTAGTTATATTTCTATTTTAATAGTTTAGATAGCTCTAATA
9688957 CATGATATTAAA
196 CATGATATTAAA
9688969 TTTATCCGAA
Statistics
Matches: 556, Mismatches: 119, Indels: 27
0.79 0.17 0.04
Matches are distributed among these distances:
477 26 0.05
478 72 0.13
479 80 0.14
480 262 0.47
481 116 0.21
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (478 bp):
TTATATTTCTGTTTTAACAATTTAGATAGCTCCAATACATAATATTAAACTTATCTAAATCATTG
AACTTGGTATCCATGCTTGATATGCATGAAAAAGTTGAGTTTGTCTATTTAAGACTTTTTGTGCC
GTCAAACGGCAAAAATATAATTTTGTAGTTATATTTCTATTTTAATAGTTTAGATAGCTCTAATA
CATGATATTAAACTTGTTTGAATGTTTAAACGCCATTGCCACACTTGATATGCATAAATAAGTTA
CGTTTTATATGCGTTTAAGACTTTTTGTGACATCAAAAGGCAAAAAAGTAACTTTACAATTATAT
TTCTGTTTTAATAATTTAGATAGATCAAATACAGGATATTAAACATGCCTAAATCATTGAACTTG
ATTGTAACGCATGATATGCATGAATAAGCTACAGTTTATGTGTTTAAGAATTTCTATACCATCAA
AGGACAAAAATGCAGATTTACAG
Found at i:9689188 original size:132 final size:130
Alignment explanation
Indices: 9688953--9689188 Score: 303
Period size: 132 Copynumber: 1.8 Consensus size: 130
9688943 AGATAGCTCT
* * * * *
9688953 AATACATGATATTAAATTTATCCGAATGATTGAACTTGGTTTTCACACTAGATATGTGTGCAAAG
1 AATACATAATATTAAACTTATCCAAATGATTGAACTTGGTTTTCACACTAGATATATGTGAAAAG
* * **
9689018 TTGTAGTTTGTGTTTGTTTAGGACTTTTTGTGCCATCAAGGGTAAAAATGTAATTTTACAGTTTG
66 TTGTAGTTTATGTTTGTTTAAGACAATTTGTGCCATCAAGGGTAAAAATGTAATTTTACAGTTTG
* * * *
9689083 AATACATAATTTTAAACTTGTCCAAATGATTGAACTTGG-TTTCGCACTTGATATATGTGAAAAA
1 AATACATAATATTAAACTTATCCAAATGATTGAACTTGGTTTTCACACTAGATATATGTG---AA
* *
9689147 AAGTTGTATTTTATGTTTGTTTAAGACAATTTGTGCTATCAA
63 AAGTTGTAGTTTATGTTTGTTTAAGACAATTTGTGCCATCAA
9689189 AAGGCAAAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
129 17 0.19
130 34 0.39
132 37 0.42
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (130 bp):
AATACATAATATTAAACTTATCCAAATGATTGAACTTGGTTTTCACACTAGATATATGTGAAAAG
TTGTAGTTTATGTTTGTTTAAGACAATTTGTGCCATCAAGGGTAAAAATGTAATTTTACAGTTTG
Found at i:9692841 original size:10 final size:9
Alignment explanation
Indices: 9692795--9692959 Score: 75
Period size: 10 Copynumber: 17.4 Consensus size: 9
9692785 TAACATTCAA
9692795 AAAAATCTTT
1 AAAAAT-TTT
9692805 AAAACATTTT
1 AAAA-ATTTT
* *
9692815 TAAAA-TCT
1 AAAAATTTT
9692823 ATAAAATTTT
1 A-AAAATTTT
*
9692833 AATAAATTTA
1 AA-AAATTTT
*
9692843 AAAAATTCT
1 AAAAATTTT
9692852 AAAATATTTT
1 AAAA-ATTTT
* *
9692862 AAAGAAATCT
1 AAA-AATTTT
*
9692872 AAACATTTTTT
1 AAA-A-ATTTT
9692883 AAAAATTTAT
1 AAAAATTT-T
*
9692893 AAAAAATTT
1 AAAAATTTT
*
9692902 AAAAA-TAT
1 AAAAATTTT
*
9692910 ATAATATATTT
1 A-AAAAT-TTT
*
9692921 AAAAA-TAT
1 AAAAATTTT
*
9692929 AAAAATTAT
1 AAAAATTTT
* *
9692938 GAGAATTTT
1 AAAAATTTT
*
9692947 TAAAATTTT
1 AAAAATTTT
9692956 AAAA
1 AAAA
9692960 TTAAAAAAAT
Statistics
Matches: 116, Mismatches: 27, Indels: 25
0.69 0.16 0.15
Matches are distributed among these distances:
8 12 0.10
9 46 0.40
10 47 0.41
11 11 0.09
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (9 bp):
AAAAATTTT
Found at i:9692847 original size:19 final size:18
Alignment explanation
Indices: 9692794--9692974 Score: 69
Period size: 19 Copynumber: 9.7 Consensus size: 18
9692784 ATAACATTCA
9692794 AAAAAATCTTTAAAACATTT
1 AAAAAAT-TTTAAAA-ATTT
** * *
9692814 TTAAAATCTATAAAATTTT
1 AAAAAAT-TTTAAAAATTT
* *
9692833 AATAAATTTAAAAAATTCT
1 AAAAAATTTTAAAAATT-T
* *
9692852 AAAATATTTTAAAGAAATCT
1 AAAAAATTTT-AA-AAATTT
**
9692872 AAACATTTTTTAAAAATTT
1 AAA-AAATTTTAAAAATTT
* *
9692891 ATAAAAAATTTAAAAATAT
1 A-AAAAATTTTAAAAATTT
* * *
9692910 ATAATATATTTAAAAATAT
1 AAAAAAT-TTTAAAAATTT
* * *
9692929 -AAAAATTATGAGAATTT
1 AAAAAATTTTAAAAATTT
** *
9692946 TTAAAATTTT-AAAATTA
1 AAAAAATTTTAAAAATTT
*
9692963 AAAAAATGTTAA
1 AAAAAATTTTAA
9692975 TAAAAAAGCC
Statistics
Matches: 117, Mismatches: 36, Indels: 18
0.68 0.21 0.11
Matches are distributed among these distances:
17 19 0.16
18 22 0.19
19 44 0.38
20 22 0.19
21 10 0.09
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAAAATTTTAAAAATTT
Found at i:9692864 original size:20 final size:20
Alignment explanation
Indices: 9692839--9692906 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 20
9692829 TTTTAATAAA
9692839 TTTAAAAAATTCTAAAATAT
1 TTTAAAAAATTCTAAAATAT
*
9692859 TTTAAAGAAA-TCTAAACATTT
1 TTTAAA-AAATTCTAAA-ATAT
* * *
9692880 TTTAAAAATTTATAAAA-AA
1 TTTAAAAAATTCTAAAATAT
9692899 TTTAAAAA
1 TTTAAAAA
9692907 TATATAATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
19 8 0.20
20 15 0.38
21 17 0.43
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.38
Consensus pattern (20 bp):
TTTAAAAAATTCTAAAATAT
Found at i:9692925 original size:27 final size:27
Alignment explanation
Indices: 9692894--9692959 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
9692884 AAAATTTATA
9692894 AAAAATTTAAAAATATAT-A-ATATATTT
1 AAAAATTTAAAAAT-TATGAGA-ATATTT
* *
9692921 AAAAATATAAAAATTATGAGAATTTTT
1 AAAAATTTAAAAATTATGAGAATATTT
*
9692948 AAAATTTTAAAA
1 AAAAATTTAAAA
9692960 TTAAAAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 3 0.09
27 29 0.88
28 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (27 bp):
AAAAATTTAAAAATTATGAGAATATTT
Found at i:9693271 original size:23 final size:23
Alignment explanation
Indices: 9693227--9693271 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
9693217 AAGCATTCTA
* ***
9693227 AAAAAATTAAAAATTTTTAAAAT
1 AAAAAATAAAAAATTCAAAAAAT
9693250 AAAAAATAAAAAATTCAAAAAA
1 AAAAAATAAAAAATTCAAAAAA
9693272 ATCCATAGAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (23 bp):
AAAAAATAAAAAATTCAAAAAAT
Found at i:9693272 original size:10 final size:10
Alignment explanation
Indices: 9693257--9693295 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
9693247 AATAAAAAAT
9693257 AAAAAATTCA
1 AAAAAATTCA
*
9693267 AAAAAATCCA
1 AAAAAATTCA
* *
9693277 TAGAAATTCA
1 AAAAAATTCA
9693287 AAAAAATTC
1 AAAAAATTC
9693296 TTTAAAAATT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.64, C:0.13, G:0.03, T:0.21
Consensus pattern (10 bp):
AAAAAATTCA
Found at i:9693564 original size:10 final size:10
Alignment explanation
Indices: 9693549--9693689 Score: 72
Period size: 10 Copynumber: 14.0 Consensus size: 10
9693539 TCAAAAAATC
9693549 TTAGAATTTT
1 TTAGAATTTT
9693559 TTAGAATTTT
1 TTAGAATTTT
*
9693569 TT-TAATTTT
1 TTAGAATTTT
*
9693578 TTAAAATTATT
1 TTAGAATT-TT
* *
9693589 TT-TAATTCT
1 TTAGAATTTT
*
9693598 TTAAAATTTGT
1 TTAGAATTT-T
** **
9693609 AAAGAAAATT
1 TTAGAATTTT
*
9693619 TTA-TATTCTT
1 TTAGAATT-TT
* * *
9693629 TTAAAAATTC
1 TTAGAATTTT
9693639 TTAGAATTTT
1 TTAGAATTTT
9693649 TTAGAATTTT
1 TTAGAATTTT
* * *
9693659 TAAAAATCTT
1 TTAGAATTTT
*
9693669 TTAGAACTTT
1 TTAGAATTTT
9693679 TTAGAAATTTT
1 TTAG-AATTTT
9693690 CTTTTAATGC
Statistics
Matches: 94, Mismatches: 30, Indels: 13
0.69 0.22 0.09
Matches are distributed among these distances:
9 12 0.13
10 66 0.70
11 16 0.17
ACGTcount: A:0.36, C:0.04, G:0.06, T:0.55
Consensus pattern (10 bp):
TTAGAATTTT
Found at i:9693578 original size:20 final size:20
Alignment explanation
Indices: 9693553--9693605 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
9693543 AAAATCTTAG
*
9693553 AATTTTTTAGAATT-TTTTT
1 AATTTTTTAAAATTATTTTT
9693572 AATTTTTTAAAATTATTTTT
1 AATTTTTTAAAATTATTTTT
*
9693592 AATTCTTTAAAATT
1 AATTTTTTAAAATT
9693606 TGTAAAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
AATTTTTTAAAATTATTTTT
Found at i:9693651 original size:30 final size:30
Alignment explanation
Indices: 9693627--9693689 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
9693617 TTTTATATTC
*
9693627 TTTTAAAAAT-TCTTAGAATTTTTTAGAAT
1 TTTTAAAAATCTCTTAGAACTTTTTAGAAT
* *
9693656 TTTTAAAAATCTTTTAGAACTTTTTAGAAA
1 TTTTAAAAATCTCTTAGAACTTTTTAGAAT
9693686 TTTT
1 TTTT
9693690 CTTTTAATGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.37, C:0.05, G:0.06, T:0.52
Consensus pattern (30 bp):
TTTTAAAAATCTCTTAGAACTTTTTAGAAT
Found at i:9693670 original size:20 final size:21
Alignment explanation
Indices: 9693647--9693686 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9693637 TCTTAGAATT
9693647 TTTTAGAA-TTTTTAAAAATC
1 TTTTAGAACTTTTTAAAAATC
*
9693667 TTTTAGAACTTTTTAGAAAT
1 TTTTAGAACTTTTTAAAAAT
9693687 TTTCTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (21 bp):
TTTTAGAACTTTTTAAAAATC
Found at i:9696990 original size:151 final size:151
Alignment explanation
Indices: 9696734--9697014 Score: 447
Period size: 151 Copynumber: 1.9 Consensus size: 151
9696724 TATTTAACCC
* * *
9696734 ATTAGTATTTAGTGATACACTTAGGTAAAGTTTGGTATCTTTTTCAAGATTACCATGGTAATGTA
1 ATTAGTATTTAGTGATACACTTAGGTAAAGTTTGGCATCATTTTCAAGATCACCATGGTAATGTA
9696799 ATCATGGAGATATGCTCGTATTATATATAGGAAAATATAAATTAGTATTTAATGATACACTTAGG
66 ATCATGGAGATATGCTCGTATTATATATAGGAAAATATAAATTAGTATTTAATGATACACTTAGG
9696864 CATCATTTGATATAGAAAAAT
131 CATCATTTGATATAGAAAAAT
* ** *
9696885 ATTAGTATTTAGTGATATACTTAGGTAGTGTTTGGCATCATTTTCAAGATCATCATGGTAATGTA
1 ATTAGTATTTAGTGATACACTTAGGTAAAGTTTGGCATCATTTTCAAGATCACCATGGTAATGTA
* * * *
9696950 ATCATTGAGGTATGCTCGTATTAGT-TATAGGAAAATATAAATTAGTATTTAGTGATATACTTAG
66 ATCATGGAGATATGCTCGTATTA-TATATAGGAAAATATAAATTAGTATTTAATGATACACTTAG
9697014 G
130 G
9697015 TAGTGCTTGG
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
151 117 0.99
152 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (151 bp):
ATTAGTATTTAGTGATACACTTAGGTAAAGTTTGGCATCATTTTCAAGATCACCATGGTAATGTA
ATCATGGAGATATGCTCGTATTATATATAGGAAAATATAAATTAGTATTTAATGATACACTTAGG
CATCATTTGATATAGAAAAAT
Found at i:9698347 original size:19 final size:21
Alignment explanation
Indices: 9698303--9698348 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
9698293 TTATTCAGTG
* *
9698303 ATGTAATAGTTGATTGTATGA
1 ATGTAATACTTGATTGTATAA
9698324 ATGTAATACTTGA-T-TATAA
1 ATGTAATACTTGATTGTATAA
9698343 ATGTAA
1 ATGTAA
9698349 CTTCAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
20 1 0.04
21 12 0.52
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.41
Consensus pattern (21 bp):
ATGTAATACTTGATTGTATAA
Found at i:9701075 original size:44 final size:43
Alignment explanation
Indices: 9700953--9701123 Score: 153
Period size: 44 Copynumber: 3.8 Consensus size: 43
9700943 GAATGAGAAA
* * * * * *
9700953 AGCTTTTTATATTTTTCAAAAATTATTGAGGCTTCGATAAGAGG
1 AGCTTTTTATATTTTT-AAAAGTTGTTAAGCCTTTGATAAGATG
* * * *
9700997 AGTTTTTTTTTATATTTTTTCAAAAGTTATTAAGCTTTTGATAGGATG
1 AG---CTTTTTATA-TTTTT-AAAAGTTGTTAAGCCTTTGATAAGATG
*
9701045 AGCTTTTTATACTTTTTAAAAGTTGTTAAGCCTCTGATAAGATG
1 AGCTTTTTATA-TTTTTAAAAGTTGTTAAGCCTTTGATAAGATG
* * *
9701089 AGCCTTTTATATTTTTTAAAGTTGTTGAGCCTTTG
1 AGCTTTTTATATTTTTAAAAGTTGTTAAGCCTTTG
9701124 TTTAGGAGAG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
43 21 0.20
44 35 0.33
45 13 0.12
47 8 0.08
48 28 0.27
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.47
Consensus pattern (43 bp):
AGCTTTTTATATTTTTAAAAGTTGTTAAGCCTTTGATAAGATG
Found at i:9701334 original size:25 final size:24
Alignment explanation
Indices: 9701306--9701353 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
9701296 TCTTTGAATA
9701306 TCAAATCTGAATCGTTGAAATTTTT
1 TCAAATCTGAATC-TTGAAATTTTT
* *
9701331 TCAAATGTGAATCTTTAAATTTT
1 TCAAATCTGAATCTTGAAATTTT
9701354 AGATGTGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (24 bp):
TCAAATCTGAATCTTGAAATTTTT
Found at i:9701361 original size:21 final size:22
Alignment explanation
Indices: 9701335--9701375 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9701325 ATTTTTTCAA
*
9701335 ATGTGAATCT-TTAAATTTTAG
1 ATGTGAATCTCTAAAATTTTAG
9701356 ATGTGAATCTCTAAAATTTT
1 ATGTGAATCTCTAAAATTTT
9701376 TAAAAAAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.46
Consensus pattern (22 bp):
ATGTGAATCTCTAAAATTTTAG
Found at i:9701373 original size:46 final size:44
Alignment explanation
Indices: 9701196--9701376 Score: 136
Period size: 46 Copynumber: 4.1 Consensus size: 44
9701186 TCCCTAAAGC
* * * * *
9701196 TTTTCAAATGCGAATCTTTAAATCTAGATAAGAATTTTAAAAAT
1 TTTTCAAATGTGAATCTTTAAATTTAGATATGAATCTTAAAATT
* * **
9701240 ATTTCAAATGTGAATTTTTAAATTTAGATAAT-AA-CTTTTAATT
1 TTTTCAAATGTGAATCTTTAAATTTAGAT-ATGAATCTTAAAATT
* * * * * *
9701283 TTTT-AAATG-AACATCTTTGAATATCAAATCTGAATCGTTGAAATT
1 TTTTCAAATGTGA-ATCTTTAAAT-TTAGATATGAATC-TTAAAATT
*
9701328 TTTTCAAATGTGAATCTTTAAATTTTAGATGTGAATCTCTAAAATT
1 TTTTCAAATGTGAATCTTTAAA-TTTAGATATGAATCT-TAAAATT
9701374 TTT
1 TTT
9701377 AAAAAAGGAT
Statistics
Matches: 103, Mismatches: 24, Indels: 18
0.71 0.17 0.12
Matches are distributed among these distances:
41 1 0.01
42 14 0.14
43 14 0.14
44 28 0.27
45 12 0.12
46 32 0.31
47 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.44
Consensus pattern (44 bp):
TTTTCAAATGTGAATCTTTAAATTTAGATATGAATCTTAAAATT
Found at i:9701597 original size:23 final size:21
Alignment explanation
Indices: 9701540--9701597 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
9701530 CTCTGAAATT
*
9701540 TTTTTAAATGTGAAACTTTAA
1 TTTTTAAATGTGAAACTTAAA
* ** *
9701561 GTTTTGGATATGAAACTCTAAAA
1 TTTTTAAATGTGAAACT-T-AAA
9701584 TTTTTAAATGTGAA
1 TTTTTAAATGTGAA
9701598 TATTTGAATT
Statistics
Matches: 26, Mismatches: 9, Indels: 2
0.70 0.24 0.05
Matches are distributed among these distances:
21 13 0.50
22 1 0.04
23 12 0.46
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (21 bp):
TTTTTAAATGTGAAACTTAAA
Found at i:9701624 original size:44 final size:43
Alignment explanation
Indices: 9701444--9701675 Score: 157
Period size: 45 Copynumber: 5.2 Consensus size: 43
9701434 TGTAAATTTT
* * * * *
9701444 TAAAATTTTCAAATGTGAATCTCTAAATTTTGGA-GCTGAACCTT
1 TAAAATTTTTAAATGTGAATATTTGAATTTTGGATG-TGAA-CTC
* * * * *
9701488 TAAGAATTTTTCAAGTGAGAATCTTTGAATTTTAGTTGTGAACTC
1 TAA-AATTTTT-AAATGTGAATATTTGAATTTTGGATGTGAACTC
* *
9701533 TGAAATTTTTTTAAATGTGAA-ACTTT-AAGTTTTGGATATGAAACTC
1 T-AAA-ATTTTTAAATGTGAATA-TTTGAA-TTTTGGATGTG-AACTC
**
9701579 TAAAATTTTTAAATGTGAATATTTGAATTTTTTATGTGAATCTC
1 TAAAATTTTTAAATGTGAATATTTGAATTTTGGATGTGAA-CTC
** * * *
9701623 TAAAACTTTTCGAATGTAAATCTATGAATTTTGGATGTGAACT-
1 TAAAA-TTTTTAAATGTGAATATTTGAATTTTGGATGTGAACTC
9701666 TAGAAATTTT
1 TA-AAATTTT
9701676 GGATGTGCAT
Statistics
Matches: 149, Mismatches: 26, Indels: 27
0.74 0.13 0.13
Matches are distributed among these distances:
43 8 0.05
44 43 0.29
45 62 0.42
46 35 0.23
47 1 0.01
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (43 bp):
TAAAATTTTTAAATGTGAATATTTGAATTTTGGATGTGAACTC
Found at i:9701739 original size:36 final size:36
Alignment explanation
Indices: 9701699--9701811 Score: 136
Period size: 36 Copynumber: 3.1 Consensus size: 36
9701689 GAAATATTAT
** *
9701699 AATTGCAAATCTTTGAGGTCATTTGTGAAACTTTAC
1 AATTGCAAATCTTTGAAATTATTTGTGAAACTTTAC
* **
9701735 AATTGCAAATCTTGGAAATTATTTGCAAAACTTTAC
1 AATTGCAAATCTTTGAAATTATTTGTGAAACTTTAC
** *
9701771 AATTGTGAATCTTTGAAATTATTTGTGAATCTTTAC
1 AATTGCAAATCTTTGAAATTATTTGTGAAACTTTAC
*
9701807 CATTG
1 AATTG
9701812 TGAAGCTCTA
Statistics
Matches: 64, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 64 1.00
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (36 bp):
AATTGCAAATCTTTGAAATTATTTGTGAAACTTTAC
Found at i:9701877 original size:20 final size:20
Alignment explanation
Indices: 9701852--9701908 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
9701842 GAATTTTGAG
*
9701852 CTTTTGTGAATCTTTGGTTT
1 CTTTTGTGAATCTTTGATTT
*
9701872 CTTTTGTGAATCATTGATTT
1 CTTTTGTGAATCTTTGATTT
*
9701892 CTTTTGTGAAACTTTGA
1 CTTTTGTGAATCTTTGA
9701909 ATGCTTGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.18, C:0.11, G:0.18, T:0.54
Consensus pattern (20 bp):
CTTTTGTGAATCTTTGATTT
Found at i:9702050 original size:19 final size:19
Alignment explanation
Indices: 9702027--9702078 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
9702017 CTTTTGGATG
9702027 ACTTTGAATGTTTTGCA-A
1 ACTTTGAATGTTTTGCATA
* * *
9702045 ATCTTTAAAT-TTTTGGATG
1 A-CTTTGAATGTTTTGCATA
9702064 ACTTTGAATGTTTTG
1 ACTTTGAATGTTTTG
9702079 TGAGTTTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
18 14 0.52
19 13 0.48
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.50
Consensus pattern (19 bp):
ACTTTGAATGTTTTGCATA
Found at i:9702093 original size:37 final size:37
Alignment explanation
Indices: 9702000--9702081 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
9701990 TTCTTGAAAC
*
9702000 TTTTGTGAATCTTTAAACTTTTGGATGACTTTGAATG
1 TTTTGTGAATCTTTAAATTTTTGGATGACTTTGAATG
**
9702037 TTTTGCAAATCTTTAAATTTTTGGATGACTTTGAATG
1 TTTTGTGAATCTTTAAATTTTTGGATGACTTTGAATG
9702074 TTTTGTGA
1 TTTTGTGA
9702082 GTTTTTGAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.24, C:0.07, G:0.18, T:0.50
Consensus pattern (37 bp):
TTTTGTGAATCTTTAAATTTTTGGATGACTTTGAATG
Found at i:9702124 original size:22 final size:20
Alignment explanation
Indices: 9702085--9702150 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
9702075 TTTGTGAGTT
*
9702085 TTTGAATTTAATTGTGAA-C
1 TTTGAATTTAATTATGAATC
9702104 ATTTGAATTTCAAATTATGAATC
1 -TTTGAATTT--AATTATGAATC
* *
9702127 TTTGAATTTATTTGTGAATC
1 TTTGAATTTAATTATGAATC
9702147 TTTG
1 TTTG
9702151 TTTTAGATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
20 22 0.55
22 17 0.43
23 1 0.03
ACGTcount: A:0.30, C:0.06, G:0.14, T:0.50
Consensus pattern (20 bp):
TTTGAATTTAATTATGAATC
Found at i:9707166 original size:13 final size:15
Alignment explanation
Indices: 9707145--9707182 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
9707135 AAATTTTAGC
9707145 TTTTATTTTT-AAAA
1 TTTTATTTTTCAAAA
9707159 TTTT-TTTTTCAAAA
1 TTTTATTTTTCAAAA
*
9707173 TTATATTTTT
1 TTTTATTTTT
9707183 TTCATTTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 5 0.24
14 11 0.52
15 5 0.24
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTATTTTTCAAAA
Found at i:9707529 original size:24 final size:24
Alignment explanation
Indices: 9707502--9707547 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
9707492 TTTCCAAATC
9707502 ATTTTTACTTAAAAATAT-TATCTT
1 ATTTTTAC-TAAAAATATCTATCTT
*
9707526 ATTTTTTCTAAAAATATCTATC
1 ATTTTTACTAAAAATATCTATC
9707548 CCTTTTTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (24 bp):
ATTTTTACTAAAAATATCTATCTT
Found at i:9707671 original size:19 final size:18
Alignment explanation
Indices: 9707643--9707680 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 18
9707633 TAATGAGAAT
9707643 AAATAAATGATGCAAATA
1 AAATAAATGATGCAAATA
9707661 AAATAAAATGATGCAAATA
1 AAAT-AAATGATGCAAATA
9707680 A
1 A
9707681 TCAATGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (18 bp):
AAATAAATGATGCAAATA
Found at i:9708355 original size:22 final size:22
Alignment explanation
Indices: 9708327--9708369 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
9708317 CCACCACTTT
9708327 CGTTGCTAGTGCCATCTCTAGC
1 CGTTGCTAGTGCCATCTCTAGC
9708349 CGTTGCTAGTGCCATCTCTAG
1 CGTTGCTAGTGCCATCTCTAG
9708370 TCGACATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.14, C:0.30, G:0.23, T:0.33
Consensus pattern (22 bp):
CGTTGCTAGTGCCATCTCTAGC
Found at i:9713766 original size:12 final size:12
Alignment explanation
Indices: 9713749--9713801 Score: 76
Period size: 12 Copynumber: 4.7 Consensus size: 12
9713739 AGTATTATTA
9713749 TTATTGTTGTTG
1 TTATTGTTGTTG
9713761 TTATTGTTGTTG
1 TTATTGTTGTTG
9713773 TTA-T-TT-TTG
1 TTATTGTTGTTG
9713782 TTATTGTTGTTG
1 TTATTGTTGTTG
*
9713794 TTTTTGTT
1 TTATTGTT
9713802 ATTATTATTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
9 6 0.16
10 3 0.08
11 3 0.08
12 25 0.68
ACGTcount: A:0.08, C:0.00, G:0.21, T:0.72
Consensus pattern (12 bp):
TTATTGTTGTTG
Found at i:9713819 original size:9 final size:9
Alignment explanation
Indices: 9713741--9713816 Score: 53
Period size: 9 Copynumber: 8.4 Consensus size: 9
9713731 AGTTTGCAAG
*
9713741 TATTATTAT
1 TATTGTTAT
*
9713750 TATTGTTGT
1 TATTGTTAT
* * *
9713759 TGTTATTGT
1 TATTGTTAT
*
9713768 TGTTGTTAT
1 TATTGTTAT
*
9713777 TTTTGTTAT
1 TATTGTTAT
* *
9713786 TGTTGTTGT
1 TATTGTTAT
*
9713795 TTTTGTTAT
1 TATTGTTAT
*
9713804 TATTATTAT
1 TATTGTTAT
9713813 TATT
1 TATT
9713817 ATTGTTGGGC
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 54 1.00
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.70
Consensus pattern (9 bp):
TATTGTTAT
Found at i:9714835 original size:21 final size:21
Alignment explanation
Indices: 9714809--9714849 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9714799 GAATTTGTTC
* *
9714809 TTTTTTGCCTTTTTCTTTTTT
1 TTTTTTACCTTTTTATTTTTT
*
9714830 TTTTTTATCTTTTTATTTTT
1 TTTTTTACCTTTTTATTTTT
9714850 GAACTTCTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.05, C:0.10, G:0.02, T:0.83
Consensus pattern (21 bp):
TTTTTTACCTTTTTATTTTTT
Found at i:9717763 original size:161 final size:158
Alignment explanation
Indices: 9717550--9718283 Score: 522
Period size: 161 Copynumber: 4.6 Consensus size: 158
9717540 TTTGTTTACA
* * * * * * *
9717550 ACTTTTTGTGTCGTTACAAGGTAAAAATACAAATTTACAGTTATTGTTCTATTTTAATAGTTTTG
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATACAAATTTGCTGTTATTGTTCTATTTTAACAGTTTGG
* *
9717615 ATAGTTTCAATACATGATATTAAACTTATTCAAATTATTGAACTTAGTTTTCACGGTTGATATGA
66 ATAGCTTCAATACATGATATTAAACTTATTCGAATTATTGAACTTAG-TTTCA--GTTGATATGA
*
9717680 ATGAAAAAGTTAATATTTACATCTATTTAGG
128 ATGAAAAAGTTAATGTTTACATCTATTTAGG
* * * * *
9717711 ACTTTTTATGCCGTTAATAGGTAATAATACAAATTTGTTGTTATTGTTCTATTTTAACAGTTTGG
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATACAAATTTGCTGTTATTGTTCTATTTTAACAGTTTGG
* * * * **
9717776 ATAGC-TCTAATACATGATATTAAACTTGTACGAATTATTAAACTT-G---CAATTGATATGTGT
66 ATAGCTTC-AATACATGATATTAAACTTATTCGAATTATTGAACTTAGTTTCAGTTGATATGAAT
* *
9717836 GAAAAAGTT-GTCGTTTATATCTATTTAGG
130 GAAAAAGTTAAT-GTTTACATCTATTTAGG
* ** * * * *
9717865 ACTATTTT-TACCGTTAAAATACAAAAATATAAATTTGCTATTATTATTTTATTTTAACAGTTTG
1 ACT-TTTTGTGCCGTTAAAAGGCAAAAATACAAATTTGCTGTTATTGTTCTATTTTAACAGTTTG
* * * * * *
9717929 TATGGCTTCATTACATGACATTAAA--TAGTGTCGAATGATTGAACTTAGTGTCTGCAGTTGATG
65 GATAGCTTCAATACATGATATTAAACTTA-T-TCGAATTATTGAACTTAGT-T-T-CAGTTGATA
* * * *
9717992 T-ATATGAAAAAGTTACTGTTTACCTATGTTTAGG
125 TGA-ATGAAAAAGTTAATGTTTACATCTATTTAGG
* * * * * * * **
9718026 ATTTTTTGGGTCATTAAAAGGCAAAAATACAAATTTGTTGTTATTGTTTTGTTTTAGTAGTTTGG
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATACAAATTTGCTGTTATTGTTCTATTTTAACAGTTTGG
* ** * * * *
9718091 ATAGCTTCAATACATGATATTAAAAATT-TTCGAAAGATTGAACTTGGCATTCACAATTAATAT-
66 ATAGCTTCAATACATGATATT-AAACTTATTCGAATTATTGAACTTAG--TT-TCAGTTGATATG
** * * * *
9718154 -ATGAGACAAAGTTGTTGTTTACCTCTGTTAATG
127 AATGA-A-AAAGTTAATGTTTACATCTATTTAGG
* ** * * *** *
9718187 ACTTTTTTTTACGTTAAAAGGCAAAAATACAAAGTTGCTGTTAGTCACCATGTTTTAACAGTTTG
1 ACTTTTTGTGCCGTTAAAAGGCAAAAATACAAATTTGCTGTTATTGTTC-TATTTTAACAGTTTG
*
9718252 GATGGATGGCTTCCATACATGATATTAAACTT
65 GAT--A--GCTTCAATACATGATATTAAACTT
9718284 GCCTAAATGA
Statistics
Matches: 450, Mismatches: 95, Indels: 52
0.75 0.16 0.09
Matches are distributed among these distances:
152 1 0.00
153 2 0.00
154 112 0.25
155 7 0.02
156 2 0.00
159 4 0.01
160 8 0.02
161 266 0.59
162 23 0.05
163 1 0.00
164 2 0.00
165 5 0.01
166 17 0.04
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (158 bp):
ACTTTTTGTGCCGTTAAAAGGCAAAAATACAAATTTGCTGTTATTGTTCTATTTTAACAGTTTGG
ATAGCTTCAATACATGATATTAAACTTATTCGAATTATTGAACTTAGTTTCAGTTGATATGAATG
AAAAAGTTAATGTTTACATCTATTTAGG
Found at i:9724538 original size:8 final size:8
Alignment explanation
Indices: 9724527--9724557 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
9724517 TATTTTGTTT
9724527 ATTATTTG
1 ATTATTTG
9724535 ATTATTTG
1 ATTATTTG
*
9724543 ATTGTTTG
1 ATTATTTG
9724551 ATTATTT
1 ATTATTT
9724558 TACTTTTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.65
Consensus pattern (8 bp):
ATTATTTG
Found at i:9726115 original size:371 final size:372
Alignment explanation
Indices: 9725219--9726195 Score: 1546
Period size: 372 Copynumber: 2.6 Consensus size: 372
9725209 ACCCGAAGGT
* * * *
9725219 CTCACGGTTTTGTCCCACAAAAGGTGCCTCACAAGGCAGAGGTGGTGTGAACCTTTTTATACCCC
1 CTCACGGTTTTGTCCTACAAAAGGTGCCTCACAAGGCAGAGATGGTGTGAACCCTTATATACCCC
9725284 AAG-GACCCTCCTATTATGTTCGATGTGAGATTCAGGACTCTTCCTTAGGTCCGTGACATTCTCC
66 -AGTGACCCTCCTATTATGTTCGATGTGAGATTCAGGACTCTTCCTTAGGTCCGTGACATTCTCC
* * * * * * * *
9725348 CGCACCCAACCTCGTGACGTCTTCATCACGGAGGCTGACCATCCTGCCTGCCTCCCTTGAGGTGC
130 CGCACCCAACCTCGTGACGCCCTCGTCACGGAAGCTGGCCACCCTGCCTACCTCCCTCGAGGTGC
* *
9725413 TTAGCGTGGATCGAATGATTTAGGGCTGGCTCTGATACCACTTGTCACAGGTCGAGACTTAAGCT
195 TTGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCACTTGTCACAGGTCGAGACTTAAGCT
* * * * * **
9725478 CCGAACCCGCACGGCTCCGAGACCTGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCCTAC
260 CCGAACCCACACGGCTCCGAGACCCGGACATTCACCATTCCGGCATCCCAGATCAGCCTGACTAC
* *
9725543 CACGGTTCACACCCTTGTGAGGTATTGTTCGCTCTGGCTCCCCCTAGC
325 CACGATTCACACCCTTGTGAGGTATTGTCCGCTCTGGCTCCCCCTAGC
*
9725591 CTCACGGTTTTGTCCTACAAAAGGTGCATCACAAGGCAGAGATGGTGTGAACCCTTATATACCCC
1 CTCACGGTTTTGTCCTACAAAAGGTGCCTCACAAGGCAGAGATGGTGTGAACCCTTATATACCCC
*
9725656 AGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTCTCCC
66 AGTGACCCTCCTATTATGTTCGATGTGAGATTCAGGACTCTTCCTTAGGTCCGTGACATTCTCCC
* *
9725721 GCACCCAACCTCATGATGCCCTCGTCACGGAAGCTGGCCACCCTGCCTACCTCCCTCGAGGTGCT
131 GCACCCAACCTCGTGACGCCCTCGTCACGGAAGCTGGCCACCCTGCCTACCTCCCTCGAGGTGCT
* * * **
9725786 TGGAGTGGATTGAACGATTTAGGGCTGGCCCTGATACCACTTGTCATGGGTCGAGACTTAAGCTC
196 TGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCACTTGTCACAGGTCGAGACTTAAGCTC
** *
9725851 CGAACCCACGTGGCTCC-AGGACCCGGACATTCACCATTCCGGCATCCCAGATCAGCCTGACTGC
261 CGAACCCACACGGCTCCGA-GACCCGGACATTCACCATTCCGGCATCCCAGATCAGCCTGACTAC
* *
9725915 CACGATTCACACCCTTGTGAGGTATTGTCCGCTCTGGC-CCCCTTGGC
325 CACGATTCACACCCTTGTGAGGTATTGTCCGCTCTGGCTCCCCCTAGC
* *
9725962 CTCACGGTTTTATCCTACAAAAGGTGCCTCACAAGGCGGAGATGGTGTGAACCCTTATATACCCC
1 CTCACGGTTTTGTCCTACAAAAGGTGCCTCACAAGGCAGAGATGGTGTGAACCCTTATATACCCC
*
9726027 AGTGACCCTCCTATTATGTTCGATGTGAGATTCAGGACTCTTTCTTAGGTCCGTGACATTCTCCC
66 AGTGACCCTCCTATTATGTTCGATGTGAGATTCAGGACTCTTCCTTAGGTCCGTGACATTCTCCC
*
9726092 GCACCCAACCTCGTGACGCCCTCGTCACGGAAGCTGGCCACCCTGCCTACCTCCCTCAAGGTGCT
131 GCACCCAACCTCGTGACGCCCTCGTCACGGAAGCTGGCCACCCTGCCTACCTCCCTCGAGGTGCT
9726157 TGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCA
196 TGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCA
9726196 ATTTTGTCAC
Statistics
Matches: 555, Mismatches: 48, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
371 233 0.42
372 322 0.58
ACGTcount: A:0.20, C:0.32, G:0.23, T:0.25
Consensus pattern (372 bp):
CTCACGGTTTTGTCCTACAAAAGGTGCCTCACAAGGCAGAGATGGTGTGAACCCTTATATACCCC
AGTGACCCTCCTATTATGTTCGATGTGAGATTCAGGACTCTTCCTTAGGTCCGTGACATTCTCCC
GCACCCAACCTCGTGACGCCCTCGTCACGGAAGCTGGCCACCCTGCCTACCTCCCTCGAGGTGCT
TGGCGTGGATCGAACGATTTAGGGCTGGCTCTGATACCACTTGTCACAGGTCGAGACTTAAGCTC
CGAACCCACACGGCTCCGAGACCCGGACATTCACCATTCCGGCATCCCAGATCAGCCTGACTACC
ACGATTCACACCCTTGTGAGGTATTGTCCGCTCTGGCTCCCCCTAGC
Found at i:9727221 original size:18 final size:18
Alignment explanation
Indices: 9727172--9727223 Score: 63
Period size: 17 Copynumber: 3.0 Consensus size: 18
9727162 GTTTGGGCTC
* *
9727172 AATTTAGGGTTT-GGATT
1 AATTTGGGGTTTAGGGTT
*
9727189 GATTTGGGG-TTAGGGTT
1 AATTTGGGGTTTAGGGTT
9727206 AATTTGGGGTTTAGGGTT
1 AATTTGGGGTTTAGGGTT
9727224 TTAGGGTTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 2 0.07
17 19 0.66
18 8 0.28
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.44
Consensus pattern (18 bp):
AATTTGGGGTTTAGGGTT
Found at i:9727224 original size:7 final size:7
Alignment explanation
Indices: 9727212--9727385 Score: 61
Period size: 7 Copynumber: 26.7 Consensus size: 7
9727202 GGTTAATTTG
9727212 GGGTTTA
1 GGGTTTA
9727219 GGGTTTTA
1 GGG-TTTA
9727227 GGGTTT-
1 GGGTTTA
9727233 -GGTTTA
1 GGGTTTA
*
9727239 GAGTTTA
1 GGGTTTA
**
9727246 GGACTT-
1 GGGTTTA
9727252 -GGTTTA
1 GGGTTTA
**
9727258 AAGTTTA
1 GGGTTTA
*
9727265 TGGTTT-
1 GGGTTTA
9727271 -GGTTTA
1 GGGTTTA
* *
9727277 -AGTTTT
1 GGGTTTA
9727283 GGGTTTA
1 GGGTTTA
9727290 -GGTTTA
1 GGGTTTA
9727296 GGGTTTA
1 GGGTTTA
*
9727303 TGGTTTA
1 GGGTTTA
*
9727310 -AGTTT-
1 GGGTTTA
*
9727315 -GTTTTA
1 GGGTTTA
*
9727321 AGGTTTA
1 GGGTTTA
9727328 GGG-TTA
1 GGGTTTA
* *
9727334 AGGCTTA
1 GGGTTTA
*
9727341 -GGATTA
1 GGGTTTA
9727347 GGGTTTA
1 GGGTTTA
9727354 GGG-TTA
1 GGGTTTA
*
9727360 AGGTTTA
1 GGGTTTA
* *
9727367 AGTTTTA
1 GGGTTTA
*
9727374 AGGTTTA
1 GGGTTTA
*
9727381 AGGTT
1 GGGTT
9727386 AAGTTTTGGG
Statistics
Matches: 129, Mismatches: 25, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
5 16 0.12
6 29 0.22
7 77 0.60
8 7 0.05
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.47
Consensus pattern (7 bp):
GGGTTTA
Found at i:9727247 original size:19 final size:19
Alignment explanation
Indices: 9727213--9727308 Score: 95
Period size: 19 Copynumber: 5.0 Consensus size: 19
9727203 GTTAATTTGG
*
9727213 GGTTTAGGGTTTTAGGGTTT
1 GGTTTAGAG-TTTAGGGTTT
**
9727233 GGTTTAGAGTTTAGGACTT
1 GGTTTAGAGTTTAGGGTTT
* *
9727252 GGTTTAAAGTTTATGGTTT
1 GGTTTAGAGTTTAGGGTTT
*
9727271 GGTTTA-AGTTTTGGGTTT
1 GGTTTAGAGTTTAGGGTTT
* *
9727289 AGGTTTAGGGTTTATGGTTT
1 -GGTTTAGAGTTTAGGGTTT
9727309 AAGTTTGTTT
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
18 10 0.16
19 35 0.56
20 17 0.27
ACGTcount: A:0.16, C:0.01, G:0.33, T:0.50
Consensus pattern (19 bp):
GGTTTAGAGTTTAGGGTTT
Found at i:9727314 original size:13 final size:13
Alignment explanation
Indices: 9727213--9727385 Score: 56
Period size: 13 Copynumber: 13.3 Consensus size: 13
9727203 GTTAATTTGG
*
9727213 GGTTTAGGGTTTTAG
1 GGTTTA-GG-TTTAT
9727228 GGTTT-GGTTTA-
1 GGTTTAGGTTTAT
**
9727239 GAGTTTAGGACT-T
1 G-GTTTAGGTTTAT
*
9727252 GGTTTAAAGTTTAT
1 GGTTT-AGGTTTAT
*
9727266 GGTTT-GGTTTAA
1 GGTTTAGGTTTAT
* *
9727278 GTTTTGGGTTTA-
1 GGTTTAGGTTTAT
9727290 GGTTTAGGGTTTAT
1 GGTTTA-GGTTTAT
*
9727304 GGTTTAAG-TT-T
1 GGTTTAGGTTTAT
* *
9727315 GTTTTAAGGTTTAG
1 GGTTT-AGGTTTAT
* *
9727329 GGTTAAGGCTTA-
1 GGTTTAGGTTTAT
* *
9727341 GGATTAGGGTTTAG
1 GGTTTA-GGTTTAT
* *
9727355 GGTTAAGGTTTAA
1 GGTTTAGGTTTAT
* *
9727368 GTTTTAAGGTTTAA
1 GGTTT-AGGTTTAT
9727382 GGTT
1 GGTT
9727386 AAGTTTTGGG
Statistics
Matches: 118, Mismatches: 26, Indels: 29
0.68 0.15 0.17
Matches are distributed among these distances:
11 6 0.05
12 33 0.28
13 44 0.37
14 30 0.25
15 5 0.04
ACGTcount: A:0.20, C:0.01, G:0.32, T:0.47
Consensus pattern (13 bp):
GGTTTAGGTTTAT
Found at i:9727330 original size:32 final size:33
Alignment explanation
Indices: 9727252--9727332 Score: 98
Period size: 32 Copynumber: 2.5 Consensus size: 33
9727242 TTTAGGACTT
* *
9727252 GGTTTAAAGTTTATGG-TTTGGTTTAAGTTTTG
1 GGTTTAAGGTTTAGGGTTTTGGTTTAAGTTTTG
9727284 GGTTT-AGGTTTAGGGTTTATGGTTTAAG-TTT-
1 GGTTTAAGGTTTAGGGTTT-TGGTTTAAGTTTTG
*
9727315 GTTTTAAGGTTTAGGGTT
1 GGTTTAAGGTTTAGGGTT
9727333 AAGGCTTAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
31 12 0.28
32 22 0.51
33 9 0.21
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (33 bp):
GGTTTAAGGTTTAGGGTTTTGGTTTAAGTTTTG
Found at i:9727388 original size:6 final size:7
Alignment explanation
Indices: 9727252--9727385 Score: 81
Period size: 7 Copynumber: 20.6 Consensus size: 7
9727242 TTTAGGACTT
9727252 GGTTTAA
1 GGTTTAA
* *
9727259 AGTTTAT
1 GGTTTAA
9727266 GGTTT--
1 GGTTTAA
9727271 GGTTTAA
1 GGTTTAA
**
9727278 -GTTTTG
1 GGTTTAA
9727284 GGTTT-A
1 GGTTTAA
*
9727290 GGTTTAG
1 GGTTTAA
*
9727297 GGTTTAT
1 GGTTTAA
9727304 GGTTTAA
1 GGTTTAA
9727311 -GTTT--
1 GGTTTAA
*
9727315 GTTTTAA
1 GGTTTAA
9727322 GGTTT-A
1 GGTTTAA
*
9727328 GGGTTAA
1 GGTTTAA
*
9727335 GGCTT-A
1 GGTTTAA
* *
9727341 GGATTAG
1 GGTTTAA
9727348 GGTTT-A
1 GGTTTAA
*
9727354 GGGTTAA
1 GGTTTAA
9727361 GGTTTAA
1 GGTTTAA
*
9727368 GTTTTAA
1 GGTTTAA
9727375 GGTTTAA
1 GGTTTAA
9727382 GGTT
1 GGTT
9727386 AAGTTTTGGG
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
5 8 0.08
6 27 0.28
7 61 0.64
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.47
Consensus pattern (7 bp):
GGTTTAA
Found at i:9727927 original size:17 final size:17
Alignment explanation
Indices: 9727905--9727939 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
9727895 AGGATAAATA
* *
9727905 TTATTATTTTTATTTTT
1 TTATTATATATATTTTT
9727922 TTATTATATATATTTTT
1 TTATTATATATATTTTT
9727939 T
1 T
9727940 GAAAACTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
TTATTATATATATTTTT
Found at i:9728103 original size:26 final size:26
Alignment explanation
Indices: 9728074--9728132 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 26
9728064 ATTGAAAGGA
9728074 ATTTTTTTCTAAAAAA-ACTTAAAAAG
1 ATTTTTTT-TAAAAAATACTTAAAAAG
*
9728100 A-TTTTTTTAAAAAATTTACTTGAAAAG
1 ATTTTTTTTAAAAAA--TACTTAAAAAG
9728127 ATTTTT
1 ATTTTT
9728133 CTTGTTTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 7 0.25
25 6 0.21
26 1 0.04
27 10 0.36
28 4 0.14
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (26 bp):
ATTTTTTTTAAAAAATACTTAAAAAG
Found at i:9728285 original size:23 final size:21
Alignment explanation
Indices: 9728266--9728317 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 21
9728256 AATTAAAAAT
*
9728266 TAAAAATAAAATAAGTTAAAAAA
1 TAAAAAT-AAATAAATT-AAAAA
*
9728289 TATAAAATAAATAAAATAAAAA
1 TA-AAAATAAATAAATTAAAAA
9728311 TAAAAAT
1 TAAAAAT
9728318 GGAATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 5 0.19
22 7 0.27
23 9 0.35
24 5 0.19
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAAAATAAATAAATTAAAAA
Found at i:9728312 original size:15 final size:16
Alignment explanation
Indices: 9728285--9728314 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9728275 AATAAGTTAA
9728285 AAAATATAAAATAAAT
1 AAAATATAAAATAAAT
9728301 AAAATA-AAAATAAA
1 AAAATATAAAATAAA
9728315 AATGGAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
AAAATATAAAATAAAT
Found at i:9728323 original size:22 final size:22
Alignment explanation
Indices: 9728284--9728326 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
9728274 AAATAAGTTA
9728284 AAAAATATAAAATAAATAAAAT
1 AAAAATATAAAATAAATAAAAT
*
9728306 AAAAATA-AAAATGGAATAAAA
1 AAAAATATAAAAT-AAATAAAA
9728327 AACCTTGCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (22 bp):
AAAAATATAAAATAAATAAAAT
Found at i:9729160 original size:3 final size:3
Alignment explanation
Indices: 9729152--9729268 Score: 91
Period size: 3 Copynumber: 40.3 Consensus size: 3
9729142 AAAACAAAAG
* * ** * *
9729152 AAT AAT AAT AAT AAT AAT GAT GAT AAT CCT GAT AAT AAT AAT AAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
9729200 AAT AA- ACT -AT ATAT AAT -AT CAT AAT AAT AAT AGT AAT AAT AAC
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
9729243 AAT AAT AAT -AT AAT -AT AAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
9729269 CTATAATATA
Statistics
Matches: 90, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
2 8 0.09
3 79 0.88
4 3 0.03
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9729237 original size:40 final size:39
Alignment explanation
Indices: 9729153--9729276 Score: 101
Period size: 40 Copynumber: 3.2 Consensus size: 39
9729143 AAACAAAAGA
* * * * *
9729153 ATAATAATAATAATAATGATGATAATCCTGATAATAATAAT
1 ATAATAATAACAATAATAAT-ATAAT-ATAACAATAATAAT
* * * *
9729194 AATACTAATAA-ACT-AT-ATATAATATCATAATAATAAT
1 -ATAATAATAACAATAATAATATAATATAACAATAATAAT
*
9729231 AGTAATAATAACAATAATAATATAATATAACAATAATACT
1 A-TAATAATAACAATAATAATATAATATAACAATAATAAT
9729271 ATAATA
1 ATAATA
9729277 TATTGCCATA
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
36 1 0.01
37 20 0.29
38 7 0.10
39 9 0.13
40 21 0.30
41 2 0.03
42 9 0.13
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.33
Consensus pattern (39 bp):
ATAATAATAACAATAATAATATAATATAACAATAATAAT
Found at i:9729684 original size:120 final size:120
Alignment explanation
Indices: 9729490--9730654 Score: 834
Period size: 120 Copynumber: 9.8 Consensus size: 120
9729480 AATAGTCGAG
* * * * * * * * * *
9729490 AATGAGGTGACCAAGATCGAGTTGAGATTGAAAATAAATTATCAGGATAGAACCATGAGTTATAA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATAA
* * * *
9729555 GAAATGATCTGGAATGAGCCAAGATTAGATGACCGGGATGAAACCACGAG-CAAAA
66 GAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTC-AAA
* ** * * * * *
9729610 AATAAAACGACCAGGACCAAGTTGAGATCAAAAATAAATGATCGGGACAAAACCATGAGTCATAA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATAA
** * * * *
9729675 GAAATGATCTAAACTGAGCCAAGATCAGGTGATCGGGATGAAATCACAAGTCAAA
66 GAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
* * * * * * * *** *
9729730 TAA-G-GTC-ACCAAGATCGAGTCGAGGTTGAAAATAAATGACCAGAACGGAACCACGAGTCATA
1 -AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATA
* * * * * *
9729792 AGAAATGATTTGGATTGAACCAAGATCAGGTGACCGGAACAAAATCACGAGTCAAA
65 AGAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
* ** * * * *
9729848 AATGAGGTGACCAGGATTGAGTCGAGGTCGAAAATAAATAAT-TGGACTAAAACCACGAGTTATA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGA-TAAAACCATGAGTCATA
* * * * * * *
9729912 AGAAATGGT-TTGACTAAGCCAAGATTAGGTGA-CAGGACGAAATCACAAGTC--A
65 AGAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
* * * * * * * **
9729964 AATAAGGCAACCAGGACCTAGTCAAGGTCGAAAATAAATGACCGGGATGAAACTACAAGTCATAA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATAA
** * *** * *
9730029 GAAATGATCCAGATTGAGCCAAGATCAGGTGACCAAAATGAAACCATGAGTCAAA
66 GAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
* ** * * *
9730084 AATGAGGTGACCAGGACTAAGTCGAGGTCGAAAATAAATGA-CTAGGACAAAACCATAAGTCATA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATC-GGGATAAAACCATGAGTCATA
* * * *
9730148 AGAAATGATCTAGACTGAGCCAAAATCAAGTGACC-AGACGAAACCACGAGTCAAA
65 AGAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
* * ** * * * * *
9730203 AATGAGGTGACTAGGATTGGGTCGAGGTCAAAAATAAATGA-CGAGATGAAATCATGAGTCATAA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATAA
* * * * **
9730267 GAAATGATCTGGACTGAGCCAAGATCAAGTAATCGGAATAAAACCACGAGT-AAA
66 GAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
** * * * * * *
9730321 AATGAAACAACTAGGACCAAGTCAAGGTCAAAAATAAATGATCGAGATAAAA-CATGAGT-ATAA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATAA
* * ** * *
9730384 GAAATGATCTGGACTAAGCCAAGATTAGGTGATTGAGACGAAACCAC-AGTAAAA
66 GAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
* * * * * * * *
9730438 AATGAGACGACTAGGACTGAGTTGAGATC-ATAAATAAATGATCGAGATGAAACCACGAGTCATA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGA-AAATAAATGATCGGGATAAAACCATGAGTCATA
** * * ** * **
9730502 AGAAATGATCTAAACTAAGCCAAGATCAAGTGACCAAGATGAAACCATAAGTCAAA
65 AGAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
* ** ** * ** ** * ** * *
9730558 AATGAGGCGACTAGGATTGAGTTAAGATAAAAAATAAACAACCGAAATAAAATCACGAGTCATAA
1 AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATAA
*
9730623 GAAATGATCTAGACTGAGCCAAGATCAGGTGA
66 GAAATGATCTGGACTGAGCCAAGATCAGGTGA
9730655 GTGATAATAG
Statistics
Matches: 840, Mismatches: 185, Indels: 40
0.79 0.17 0.04
Matches are distributed among these distances:
116 59 0.07
117 110 0.13
118 211 0.25
119 140 0.17
120 316 0.38
121 4 0.00
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (120 bp):
AATGAGGCGACCAGGACCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCATGAGTCATAA
GAAATGATCTGGACTGAGCCAAGATCAGGTGACCGGGACGAAACCACGAGTCAAA
Found at i:9729917 original size:238 final size:236
Alignment explanation
Indices: 9729494--9730654 Score: 912
Period size: 236 Copynumber: 4.9 Consensus size: 236
9729484 GTCGAGAATG
* * * * * * * *
9729494 AGGTGACCAAGATCGAGTTGAGATTGAAAATAAATTATCAGGAT-AGAACCATGAGTTATAAGAA
1 AGGTCACCAAGATCGAGTCGAGGTCGAAAATAAATGACCAGGATGA-AACCACGAGTCATAAGAA
* * * * * * ***
9729558 ATGATCTGGAATGAGCCAAGATTAGATGACCGGGATGAAACCACGAG-CAAAAAATAAAACGACC
65 ATGATCTGGATTGAGCCAAGATCAGGTGACCGGAATAAAACCACGAGTC-AAAAATGAGGTGACC
* * * * * * *
9729622 AGGACCAAGTTGAGATCAAAAATAAATGATCGGGACAAAACCATGAGTCATAAGAAATGATCTAA
129 AGGACTAAGTCGAGGTCGAAAATAAATAAT-AGGACAAAACCATGAGTCATAAGAAATGATCTAG
* *
9729687 ACTGAGCCAAGATCAGGTGATCGGGATGAAATCACAAGTCAAATA
193 ACTGAGCCAAGATCAGGTGA-CAGGACGAAATCACAAGTCAAATA
* * * *
9729732 AGGTCACCAAGATCGAGTCGAGGTTGAAAATAAATGACCAGAACGGAACCACGAGTCATAAGAAA
1 AGGTCACCAAGATCGAGTCGAGGTCGAAAATAAATGACCAGGATGAAACCACGAGTCATAAGAAA
* * * *
9729797 TGATTTGGATTGAACCAAGATCAGGTGACCGGAACAAAATCACGAGTCAAAAATGAGGTGACCAG
66 TGATCTGGATTGAGCCAAGATCAGGTGACCGGAATAAAACCACGAGTCAAAAATGAGGTGACCAG
* * * * * * *
9729862 GATTGAGTCGAGGTCGAAAATAAATAATTGGACTAAAACCACGAGTTATAAGAAATGGT-TTGAC
131 GACTAAGTCGAGGTCGAAAATAAATAATAGGAC-AAAACCATGAGTCATAAGAAATGATCTAGAC
* *
9729926 TAAGCCAAGATTAGGTGACAGGACGAAATCACAAGTCAAATA
195 TGAGCCAAGATCAGGTGACAGGACGAAATCACAAGTCAAATA
* * * * * * *
9729968 AGG-CAACCAGGACCTAGTCAAGGTCGAAAATAAATGACCGGGATGAAACTACAAGTCATAAGAA
1 AGGTC-ACCAAGATCGAGTCGAGGTCGAAAATAAATGACCAGGATGAAACCACGAGTCATAAGAA
** ** * *
9730032 ATGATCCAGATTGAGCCAAGATCAGGTGACCAAAATGAAACCATGAGTCAAAAATGAGGTGACCA
65 ATGATCTGGATTGAGCCAAGATCAGGTGACCGGAATAAAACCACGAGTCAAAAATGAGGTGACCA
* *
9730097 GGACTAAGTCGAGGTCGAAAATAAATGACTAGGACAAAACCATAAGTCATAAGAAATGATCTAGA
130 GGACTAAGTCGAGGTCGAAAATAAAT-AATAGGACAAAACCATGAGTCATAAGAAATGATCTAGA
* * * * *
9730162 CTGAGCCAAAATCAAGTGACCA-GACGAAACCACGAGTCAAAAATG
194 CTGAGCCAAGATCAGGTGA-CAGGACGAAATCACAAGTC--AAATA
* * * * * * * * *
9730207 AGGTGACTAGGATTGGGTCGAGGTCAAAAATAAATGACGA-GATGAAATCATGAGTCATAAGAAA
1 AGGTCACCAAGATCGAGTCGAGGTCGAAAATAAATGACCAGGATGAAACCACGAGTCATAAGAAA
* * * * **** *
9730271 TGATCTGGACTGAGCCAAGATCAAGTAATCGGAATAAAACCACGAGT-AAAAATGAAACAACTAG
66 TGATCTGGATTGAGCCAAGATCAGGTGACCGGAATAAAACCACGAGTCAAAAATGAGGTGACCAG
* * * * * * *
9730335 GACCAAGTCAAGGTCAAAAATAAATGATCGAGATAAAA-CATGAGT-ATAAGAAATGATCTGGAC
131 GACTAAGTCGAGGTCGAAAATAAATAATAG-GACAAAACCATGAGTCATAAGAAATGATCTAGAC
* * ** * *
9730398 TAAGCCAAGATTAGGTGATTGAGACGAAACCAC-AGT-AAAAA
195 TGAGCCAAGATCAGGTGACAG-GACGAAATCACAAGTCAAATA
* * * * * *
9730439 ATGAGACGACTAGGA-CTGAGTTGAGATC-ATAAATAAATGATC-GAGATGAAACCACGAGTCAT
1 A-G-GTC-ACCAAGATC-GAGTCGAGGTCGA-AAATAAATGACCAG-GATGAAACCACGAGTCAT
** * * * * * **
9730501 AAGAAATGATCTAAACTAAGCCAAGATCAAGTGACC-AAGATGAAACCATAAGTCAAAAATGAGG
60 AAGAAATGATCTGGATTGAGCCAAGATCAGGTGACCGGA-ATAAAACCACGAGTCAAAAATGAGG
* * * * ** * ** * ** * * * *
9730565 CGACTAGGATTGAGTTAAGATAAAAAATAAACAACCGAAATAAAATCACGAGTCATAAGAAATGA
124 TGACCAGGACTAAGTCGAGGTCGAAAATAAATAATAG-GACAAAACCATGAGTCATAAGAAATGA
9730630 TCTAGACTGAGCCAAGATCAGGTGA
188 TCTAGACTGAGCCAAGATCAGGTGA
9730655 GTGATAATAG
Statistics
Matches: 740, Mismatches: 159, Indels: 47
0.78 0.17 0.05
Matches are distributed among these distances:
232 4 0.01
233 1 0.00
234 2 0.00
235 61 0.08
236 250 0.34
237 143 0.19
238 212 0.29
239 67 0.09
ACGTcount: A:0.44, C:0.15, G:0.23, T:0.18
Consensus pattern (236 bp):
AGGTCACCAAGATCGAGTCGAGGTCGAAAATAAATGACCAGGATGAAACCACGAGTCATAAGAAA
TGATCTGGATTGAGCCAAGATCAGGTGACCGGAATAAAACCACGAGTCAAAAATGAGGTGACCAG
GACTAAGTCGAGGTCGAAAATAAATAATAGGACAAAACCATGAGTCATAAGAAATGATCTAGACT
GAGCCAAGATCAGGTGACAGGACGAAATCACAAGTCAAATA
Found at i:9730594 original size:474 final size:474
Alignment explanation
Indices: 9729617--9730654 Score: 1137
Period size: 474 Copynumber: 2.2 Consensus size: 474
9729607 AAAAATAAAA
* *
9729617 CGACCAGGACCAAGTTGAGATCAAAAATAAATGA-TCGGGACAAAACCATGAGTCATAAGAAATG
1 CGACCAGGACTAAGTTGAGATCAAAAATAAATGACT-AGGACAAAACCATGAGTCATAAGAAATG
* ** * *
9729681 ATCTAAACTGAGCCAAGATCAGGTGATCGGGATGAAATCACAAGTCAAATAAGGTCACCAAGATC
65 ATCTAGACTGAGCCAAGATCAGGTGATCCAGACGAAACCACAAGTCAAATAAGGTCACCAAGATC
** * * *
9729746 GAGTCGAGGTTGAAAATAAATGACCAGAACGGAACCACGAGTCATAAGAAATGATTTGGATTGAA
130 GAGTCGAGGTCAAAAATAAATGACCAGAACGAAACCACGAGTCATAAGAAATGATCTGGACTGAA
* * * **** *** *
9729811 CCAAGATCAGGTGACCGGAACAAAATCACGAGTCAAAAATGAGGTGACCAGGATTGAGTCGAGGT
195 CCAAGATCAAGTAACCGGAACAAAACCACGAGTCAAAAATGAAACAACCAGGACCAAGTCAAGGT
* * * *
9729876 CGAAAATAAATAATTGGACTAAAACCACGAGTTATAAGAAATGGTTTGACTAAGCCAAGATTAGG
260 CAAAAATAAATAATCGGACTAAAACCACGAGTTATAAGAAATGATTGGACTAAGCCAAGATTAGG
* * *
9729941 TGACAGGACGAAATCACAAGTCAAATAAGGCAACCAGGACCTAGTCAAGGTCGAAAATAAATGAC
325 TGACAGGACGAAACCACAAGTCAAAAAAGGCAACCAGGACCTAGTCAAGATCGAAAATAAATGAC
* * * * * *
9730006 CGGGATGAAACTACAAGTCATAAGAAATGATCCAGATTGAGCCAAGATCAGGTGACCAAAATGAA
390 CGAGATGAAACCACAAGTCATAAGAAATGATCCAAACTAAGCCAAGATCAAGTGACCAAAATGAA
*
9730071 ACCATGAGTCAAAAATGAGG
455 ACCATAAGTCAAAAATGAGG
* * * * *
9730091 TGACCAGGACTAAGTCGAGGTCGAAAATAAATGACTAGGACAAAACCATAAGTCATAAGAAATGA
1 CGACCAGGACTAAGTTGAGATCAAAAATAAATGACTAGGACAAAACCATGAGTCATAAGAAATGA
* * * * * * *
9730156 TCTAGACTGAGCCAAAATCAAGTGA-CCAGACGAAACCACGAGTCAAAAATGAGGTGACTAGGAT
66 TCTAGACTGAGCCAAGATCAGGTGATCCAGACGAAACCACAAGTC--AAATAAGGTCACCAAGAT
* * * * * *
9730220 TGGGTCGAGGTCAAAAATAAATGACGAG-ATGAAATCATGAGTCATAAGAAATGATCTGGACTGA
129 CGAGTCGAGGTCAAAAATAAATGACCAGAACGAAACCACGAGTCATAAGAAATGATCTGGACTGA
* * * *
9730284 GCCAAGATCAAGTAATCGGAATAAAACCACGAGT-AAAAATGAAACAACTAGGACCAAGTCAAGG
194 ACCAAGATCAAGTAACCGGAACAAAACCACGAGTCAAAAATGAAACAACCAGGACCAAGTCAAGG
* *
9730348 TCAAAAATAAATGATCGAGA-TAAAA-CATGAG-TATAAGAAATGATCTGGACTAAGCCAAGATT
259 TCAAAAATAAATAATCG-GACTAAAACCACGAGTTATAAGAAATGAT-TGGACTAAGCCAAGATT
** * * **
9730410 AGGTGATTGAGACGAAACCAC-AGT-AAAAAATGAGACGACTAGGA-CTGAGTTGAGATC-ATAA
322 AGGTGACAG-GACGAAACCACAAGTCAAAAAA-G-G-CAACCAGGACCT-AGTCAAGATCGA-AA
* * *
9730471 ATAAATGATCGAGATGAAACCACGAGTCATAAGAAATGATCTAAACTAAGCCAAGATCAAGTGAC
381 ATAAATGACCGAGATGAAACCACAAGTCATAAGAAATGATCCAAACTAAGCCAAGATCAAGTGAC
*
9730536 CAAGATGAAACCATAAGTCAAAAATGAGG
446 CAAAATGAAACCATAAGTCAAAAATGAGG
* * * * * ** * * * * *
9730565 CGACTAGGATTGAGTTAAGATAAAAAATAAACAAC-CGAAATAAAATCACGAGTCATAAGAAATG
1 CGACCAGGACTAAGTTGAGATCAAAAATAAATGACTAG-GACAAAACCATGAGTCATAAGAAATG
9730629 ATCTAGACTGAGCCAAGATCAGGTGA
65 ATCTAGACTGAGCCAAGATCAGGTGA
9730655 GTGATAATAG
Statistics
Matches: 462, Mismatches: 90, Indels: 24
0.80 0.16 0.04
Matches are distributed among these distances:
471 17 0.04
472 32 0.07
473 69 0.15
474 306 0.66
475 38 0.08
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (474 bp):
CGACCAGGACTAAGTTGAGATCAAAAATAAATGACTAGGACAAAACCATGAGTCATAAGAAATGA
TCTAGACTGAGCCAAGATCAGGTGATCCAGACGAAACCACAAGTCAAATAAGGTCACCAAGATCG
AGTCGAGGTCAAAAATAAATGACCAGAACGAAACCACGAGTCATAAGAAATGATCTGGACTGAAC
CAAGATCAAGTAACCGGAACAAAACCACGAGTCAAAAATGAAACAACCAGGACCAAGTCAAGGTC
AAAAATAAATAATCGGACTAAAACCACGAGTTATAAGAAATGATTGGACTAAGCCAAGATTAGGT
GACAGGACGAAACCACAAGTCAAAAAAGGCAACCAGGACCTAGTCAAGATCGAAAATAAATGACC
GAGATGAAACCACAAGTCATAAGAAATGATCCAAACTAAGCCAAGATCAAGTGACCAAAATGAAA
CCATAAGTCAAAAATGAGG
Found at i:9731403 original size:20 final size:20
Alignment explanation
Indices: 9731380--9731428 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 20
9731370 TTCGGTTTAA
9731380 GTCTTTCTTTTTCCTCTTTT
1 GTCTTTCTTTTTCCTCTTTT
*
9731400 GTC-TT-TTTTTCTTCTTTT
1 GTCTTTCTTTTTCCTCTTTT
*
9731418 -TTTTTCTTTTT
1 GTCTTTCTTTTT
9731429 TTTTGCTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 1 0.04
18 14 0.56
19 7 0.28
20 3 0.12
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (20 bp):
GTCTTTCTTTTTCCTCTTTT
Found at i:9731421 original size:13 final size:13
Alignment explanation
Indices: 9731403--9731484 Score: 64
Period size: 13 Copynumber: 6.5 Consensus size: 13
9731393 CTCTTTTGTC
9731403 TTTTTTTCTTCTT
1 TTTTTTTCTTCTT
9731416 TTTTTTTC-T-TT
1 TTTTTTTCTTCTT
* *
9731427 TTTTTTGCTTGTT
1 TTTTTTTCTTCTT
*
9731440 TCCTTTTT-TTCTT
1 T-TTTTTTCTTCTT
** *
9731453 TTTTTCCCCTCTT
1 TTTTTTTCTTCTT
*
9731466 TTTTTGTC-TCTT
1 TTTTTTTCTTCTT
9731478 TTTTTTT
1 TTTTTTT
9731485 TTTTTGTTTC
Statistics
Matches: 54, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
11 9 0.17
12 15 0.28
13 26 0.48
14 4 0.07
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.79
Consensus pattern (13 bp):
TTTTTTTCTTCTT
Found at i:9731429 original size:8 final size:8
Alignment explanation
Indices: 9731383--9731458 Score: 59
Period size: 8 Copynumber: 9.5 Consensus size: 8
9731373 GGTTTAAGTC
9731383 TTTC-TTT
1 TTTCTTTT
*
9731390 TTCCTCTTT
1 TTTCT-TTT
*
9731399 TGTCTTTT
1 TTTCTTTT
9731407 TTTCTTCTT
1 TTTCTT-TT
9731416 TTT-TTTT
1 TTTCTTTT
9731423 CTTT-TTTT
1 -TTTCTTTT
* *
9731431 TTGCTTGT
1 TTTCTTTT
*
9731439 TTCCTTTT
1 TTTCTTTT
9731447 TTTCTTTT
1 TTTCTTTT
9731455 TTTC
1 TTTC
9731459 CCCTCTTTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
7 7 0.13
8 37 0.67
9 11 0.20
ACGTcount: A:0.00, C:0.17, G:0.04, T:0.79
Consensus pattern (8 bp):
TTTCTTTT
Found at i:9731808 original size:18 final size:17
Alignment explanation
Indices: 9731778--9731813 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
9731768 ACCCCATCAA
9731778 TTTTCTTTTCTTTTTTT
1 TTTTCTTTTCTTTTTTT
*
9731795 TTTTTTTTTACTTTTTTT
1 TTTTCTTTT-CTTTTTTT
9731813 T
1 T
9731814 GTGGAGCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.03, C:0.08, G:0.00, T:0.89
Consensus pattern (17 bp):
TTTTCTTTTCTTTTTTT
Found at i:9735484 original size:24 final size:24
Alignment explanation
Indices: 9735467--9735516 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
9735457 AATTTCTCAA
9735467 AAATAAAACCAAAAAATTTAAAAT
1 AAATAAAACCAAAAAATTTAAAAT
* *
9735491 AAATAAAATCAAAAAA-TAAAAAT
1 AAATAAAACCAAAAAATTTAAAAT
9735514 AAA
1 AAA
9735517 ATGGGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (24 bp):
AAATAAAACCAAAAAATTTAAAAT
Found at i:9736356 original size:3 final size:3
Alignment explanation
Indices: 9736341--9736468 Score: 102
Period size: 3 Copynumber: 43.3 Consensus size: 3
9736331 AAATAAAAAG
* * ** *
9736341 AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT GAT AAT CCT GAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
9736389 AAT AGT AAT ACT AAT AA- ACT -AT ATAC AAT -AT CAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* *
9736432 AGT AAT AAT AAT AAT AAT ATAT AAT -AT AAC AAT AAT A
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT A
9736469 CTATAATATA
Statistics
Matches: 97, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
2 6 0.06
3 86 0.89
4 5 0.05
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:9736479 original size:21 final size:20
Alignment explanation
Indices: 9736409--9736479 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 20
9736399 CTAATAAACT
* *
9736409 ATATACAATATCATAATAATA
1 ATATATAATAT-ATAACAATA
* *
9736430 ATA-GTAATA-ATAATAATA
1 ATATATAATATATAACAATA
9736448 ATATAT-A-ATATAACAATA
1 ATATATAATATATAACAATA
9736466 ATACTATAATATAT
1 ATA-TATAATATAT
9736480 TGCCATATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
17 1 0.02
18 24 0.59
19 4 0.10
20 5 0.12
21 7 0.17
ACGTcount: A:0.58, C:0.06, G:0.01, T:0.35
Consensus pattern (20 bp):
ATATATAATATATAACAATA
Found at i:9736953 original size:8 final size:9
Alignment explanation
Indices: 9736934--9736967 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
9736924 ATAATAAAAT
9736934 AAATTATAA
1 AAATTATAA
9736943 AAATTATAAA
1 AAATTAT-AA
*
9736953 AAATAATAA
1 AAATTATAA
9736962 AAATTA
1 AAATTA
9736968 AGTAAAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (9 bp):
AAATTATAA
Found at i:9736961 original size:19 final size:19
Alignment explanation
Indices: 9736917--9736968 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
9736907 TGTAGAAAGT
*
9736917 AATAATAATAA-TAAAATA
1 AATAATAAAAATTAAAATA
*
9736935 AATTATAAAAATTATAAA-A
1 AATAATAAAAATTA-AAATA
9736954 AATAATAAAAATTAA
1 AATAATAAAAATTAA
9736969 GTAAAAGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 10 0.34
19 16 0.55
20 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
AATAATAAAAATTAAAATA
Found at i:9738867 original size:3 final size:3
Alignment explanation
Indices: 9738855--9738887 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
9738845 ATATTACTTG
9738855 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9738888 GTTCTACCGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:9739141 original size:38 final size:38
Alignment explanation
Indices: 9739097--9739182 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
9739087 GTCCTAGGTG
9739097 AAACTTGA-AACCTGAGATGAAACTCTAAACCCAAAGTA
1 AAACTTGAGAACCTGAG-TGAAACTCTAAACCCAAAGTA
* * * * *
9739135 AAACTTGAGACCCTTAGTGAAGCTCTAAACCCTAGGTA
1 AAACTTGAGAACCTGAGTGAAACTCTAAACCCAAAGTA
*
9739173 AAACTCGAGA
1 AAACTTGAGA
9739183 CCTAAATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 35 0.85
39 6 0.15
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (38 bp):
AAACTTGAGAACCTGAGTGAAACTCTAAACCCAAAGTA
Found at i:9739409 original size:18 final size:18
Alignment explanation
Indices: 9739396--9739434 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
9739386 TTTAAAATAA
9739396 TAAA-ATTAAATAAAGAT
1 TAAAGATTAAATAAAGAT
*
9739413 TAAAGATTAAATAAAGAA
1 TAAAGATTAAATAAAGAT
9739431 TAAA
1 TAAA
9739435 AATGTGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.26
Consensus pattern (18 bp):
TAAAGATTAAATAAAGAT
Found at i:9741224 original size:13 final size:14
Alignment explanation
Indices: 9741204--9741240 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
9741194 TAAAGTTAGG
*
9741204 ATAAAAAAAAGATA
1 ATAAAAAAAAGAGA
9741218 A-AAAAAAAAGAGA
1 ATAAAAAAAAGAGA
9741231 ATAAAAAAAA
1 ATAAAAAAAA
9741241 AGGAGTCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (14 bp):
ATAAAAAAAAGAGA
Found at i:9741251 original size:17 final size:16
Alignment explanation
Indices: 9741206--9741241 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
9741196 AAGTTAGGAT
9741206 AAAAAAA-AG-ATAAA
1 AAAAAAAGAGAATAAA
9741220 AAAAAAAGAGAATAAA
1 AAAAAAAGAGAATAAA
9741236 AAAAAA
1 AAAAAA
9741242 GGAGTCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.35
15 2 0.10
16 11 0.55
ACGTcount: A:0.86, C:0.00, G:0.08, T:0.06
Consensus pattern (16 bp):
AAAAAAAGAGAATAAA
Found at i:9742676 original size:4 final size:4
Alignment explanation
Indices: 9742653--9742695 Score: 59
Period size: 4 Copynumber: 10.8 Consensus size: 4
9742643 TTCATTTGTG
* * *
9742653 CATT CCTT CATT CTTT CATT CATT CATT CATT CATT TATT CAT
1 CATT CATT CATT CATT CATT CATT CATT CATT CATT CATT CAT
9742696 CTATTTATGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (4 bp):
CATT
Found at i:9745120 original size:17 final size:17
Alignment explanation
Indices: 9745078--9745112 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
9745068 GAGGTAGGTA
9745078 AAAAAAAAAGAGAAAAG
1 AAAAAAAAAGAGAAAAG
9745095 AAAAAAAAAGAGAAAAG
1 AAAAAAAAAGAGAAAAG
9745112 A
1 A
9745113 TGAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAGAAAAG
Found at i:9745602 original size:10 final size:10
Alignment explanation
Indices: 9745587--9745654 Score: 55
Period size: 10 Copynumber: 6.3 Consensus size: 10
9745577 AAGAATGCTT
9745587 AAAAAAAAGA
1 AAAAAAAAGA
*
9745597 AAAAAAGAGGA
1 AAAAAA-AAGA
9745608 AAAATAAAAGA
1 AAAA-AAAAGA
* *
9745619 ATAATAAAGTA
1 AAAAAAAAG-A
9745630 AAAGAAGAAAGA
1 AAA-AA-AAAGA
*
9745642 AAAAGAAAGA
1 AAAAAAAAGA
9745652 AAA
1 AAA
9745655 GAAATGAATG
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
10 18 0.39
11 17 0.37
12 7 0.15
13 4 0.09
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:9745641 original size:23 final size:22
Alignment explanation
Indices: 9745614--9745657 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
9745604 AGGAAAAATA
* *
9745614 AAAGAATAATAAAGTAAAAGAAG
1 AAAGAAAAAGAAAG-AAAAGAAG
9745637 AAAGAAAAAGAAAGAAAAGAA
1 AAAGAAAAAGAAAGAAAAGAA
9745658 ATGAATGGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (22 bp):
AAAGAAAAAGAAAGAAAAGAAG
Found at i:9746584 original size:28 final size:28
Alignment explanation
Indices: 9746538--9746597 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
9746528 TCTCAAGAAC
** *
9746538 TTAAGCCTAGTTTAGTTGGCACTTAAAT
1 TTAAGCCTAAATTAGTTGGCACCTAAAT
* *
9746566 TTAAGCCTAAATTATTTGGTACCTAAAT
1 TTAAGCCTAAATTAGTTGGCACCTAAAT
9746594 TTAA
1 TTAA
9746598 ACTTAGTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (28 bp):
TTAAGCCTAAATTAGTTGGCACCTAAAT
Found at i:9746727 original size:22 final size:22
Alignment explanation
Indices: 9746693--9746734 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
9746683 AATGAAGTCT
*
9746693 TAAGCCCAGTTTAGTTAGCAAA
1 TAAGCCCAATTTAGTTAGCAAA
*
9746715 TAAGCTCAATTTAGTTAGCA
1 TAAGCCCAATTTAGTTAGCA
9746735 CCCAGGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (22 bp):
TAAGCCCAATTTAGTTAGCAAA
Found at i:9747094 original size:32 final size:32
Alignment explanation
Indices: 9747000--9747479 Score: 245
Period size: 33 Copynumber: 14.6 Consensus size: 32
9746990 GCACCTAAGT
*
9747000 TTTAAGCCTAGTTTAGCTGGCACTC-ATGAAAA
1 TTTAAGCCCAGTTTAGCTGGCAC-CAATGAAAA
* * * * *
9747032 TAGTTATGCCTAGCTTAACTAGCACCCAATG-AAA
1 T--TTAAGCCCAGTTTAGCTGGCA-CCAATGAAAA
**
9747066 TTTAAGCCCAGTTTAGCTGGCATCCAATGAAGT
1 TTTAAGCCCAGTTTAGCTGGCA-CCAATGAAAA
* * * ** *
9747099 TTTGAGCCTAGCTTAGCTATCATCCAACGAAAA
1 TTTAAGCCCAGTTTAGCTGGCA-CCAATGAAAA
* * *
9747132 TTTAAGCCTAGTTTAGCTGGTATCAAT-AAAA
1 TTTAAGCCCAGTTTAGCTGGCACCAATGAAAA
**
9747163 TTTAAG-CTGGTTTGACTGGGCTGGCATCCAAT-AAAA
1 TTTAAGCCCAGTTT-A----GCTGGCA-CCAATGAAAA
* * *
9747199 TTTAAACCCAGTTTAACTAGCACCCAATGAAAA
1 TTTAAGCCCAGTTTAGCTGGCA-CCAATGAAAA
* * * *
9747232 CTTAAGCCCAATATAGTTGGCACCCAATGAAAA
1 TTTAAGCCCAGTTTAGCTGGCA-CCAATGAAAA
* * * * * *
9747265 CTTAAGCCCAGATTAGTTGGCATGCAGTGAAAT
1 TTTAAGCCCAGTTTAGCTGGCA-CCAATGAAAA
* * * **
9747298 TTTAAGCCCAATTTGGCTGACACCTAATGAAGT
1 TTTAAGCCCAGTTTAGCTGGCACC-AATGAAAA
* * * *
9747331 TTTAAGCCTAGTTTAGTTGACACTTAAT-AAAA
1 TTTAAGCCCAGTTTAGCTGGCAC-CAATGAAAA
** * *
9747363 TTTAAGCCCAACTTAGTTGGTACCTAATGAAAA
1 TTTAAGCCCAGTTTAGCTGGCACC-AATGAAAA
** *
9747396 TTTAAGCCCCA-AATAGTTGGCACCAATGAAAA
1 TTTAAG-CCCAGTTTAGCTGGCACCAATGAAAA
* * ** *
9747428 TTTAAGTCTAGAGTAGCTGACACCAATGAAAA
1 TTTAAGCCCAGTTTAGCTGGCACCAATGAAAA
* *
9747460 TTTAAACTCAGTTTAGCTGG
1 TTTAAGCCCAGTTTAGCTGG
9747480 TCCATAAGCC
Statistics
Matches: 342, Mismatches: 87, Indels: 38
0.73 0.19 0.08
Matches are distributed among these distances:
30 6 0.02
31 13 0.04
32 105 0.31
33 163 0.48
34 26 0.08
35 10 0.03
36 14 0.04
37 5 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (32 bp):
TTTAAGCCCAGTTTAGCTGGCACCAATGAAAA
Found at i:9747400 original size:65 final size:65
Alignment explanation
Indices: 9747223--9747464 Score: 188
Period size: 65 Copynumber: 3.7 Consensus size: 65
9747213 AACTAGCACC
* * * *
9747223 CAATGAAAACTTAAGCCCAATATAGTTGGCACCCAATGAAAACTTAAGCCCAGATTAGTTGGCAT
1 CAATGAAAATTTAAGCCCAAT-TAGTTGGCACCTAATGAAAATTTAAGCCCAGATTAGTTGACAT
9747288 G
65 G
* * * * * ** * *
9747289 CAGTGAAATTTTAAGCCCAATTTGGCTGACACCTAATGAAGTTTTAAGCCTAGTTTAGTTGACAC
1 CAATGAAAATTTAAGCCCAA-TTAGTTGGCACCTAATGAAAATTTAAGCCCAGATTAGTTGACA-
9747354 T-
64 TG
* * * *
9747355 TAAT-AAAATTTAAGCCCAACTTAGTTGGTACCTAATGAAAATTTAAGCCCCA-AATAGTTGGCA
1 CAATGAAAATTTAAGCCCAA-TTAGTTGGCACCTAATGAAAATTTAAG-CCCAGATTAGTTGACA
*
9747418 -C
64 TG
* * * * *
9747419 CAATGAAAATTTAAGTCTAGAGTAGCTGACACC-AATGAAAATTTAA
1 CAATGAAAATTTAAGCCCA-ATTAGTTGGCACCTAATGAAAATTTAA
9747465 ACTCAGTTTA
Statistics
Matches: 136, Mismatches: 34, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
64 16 0.12
65 63 0.46
66 55 0.40
67 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (65 bp):
CAATGAAAATTTAAGCCCAATTAGTTGGCACCTAATGAAAATTTAAGCCCAGATTAGTTGACATG
Found at i:9747525 original size:22 final size:22
Alignment explanation
Indices: 9747485--9747541 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
9747475 GCTGGTCCAT
* *
9747485 AAGCCCAAAATTAGTTGGCACGA
1 AAGCCC-AGATTAGCTGGCACGA
* *
9747508 AAGCCCAGATTAGCTGGCATGT
1 AAGCCCAGATTAGCTGGCACGA
*
9747530 AAGTCCAGATTA
1 AAGCCCAGATTA
9747542 ACGGTCACAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 23 0.79
23 6 0.21
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (22 bp):
AAGCCCAGATTAGCTGGCACGA
Found at i:9747674 original size:12 final size:12
Alignment explanation
Indices: 9747653--9747683 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
9747643 TCATCTTAAG
9747653 AAAAATAAAAACT
1 AAAAA-AAAAACT
9747666 AAAAAAAAAACT
1 AAAAAAAAAACT
9747678 AAAAAA
1 AAAAAA
9747684 GAAAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.84, C:0.06, G:0.00, T:0.10
Consensus pattern (12 bp):
AAAAAAAAAACT
Found at i:9747692 original size:18 final size:16
Alignment explanation
Indices: 9747650--9747717 Score: 57
Period size: 18 Copynumber: 4.1 Consensus size: 16
9747640 TGGTCATCTT
9747650 AAGAAAAATAAAAACTAA
1 AAGAAAAATAAAAA--AA
*
9747668 AAAAAAAACTAAAAAAGA
1 AAGAAAAA-TAAAAAA-A
*
9747686 AAGAAAAATTAAAAAA
1 AAGAAAAATAAAAAAA
* *
9747702 CA-AAAAACAAAAAAA
1 AAGAAAAATAAAAAAA
9747717 A
1 A
9747718 TTACCTTAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
15 11 0.27
16 2 0.05
17 7 0.17
18 15 0.37
19 6 0.15
ACGTcount: A:0.82, C:0.06, G:0.04, T:0.07
Consensus pattern (16 bp):
AAGAAAAATAAAAAAA
Found at i:9747718 original size:24 final size:26
Alignment explanation
Indices: 9747670--9747720 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
9747660 AAAACTAAAA
*
9747670 AAAAAACTAAAAAAGAAAGAAAAATT
1 AAAAAACTAAAAAACAAAGAAAAATT
9747696 AAAAAAC-AAAAAACAAA-AAAAATT
1 AAAAAACTAAAAAACAAAGAAAAATT
9747720 A
1 A
9747721 CCTTAGAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 8 0.33
25 9 0.38
26 7 0.29
ACGTcount: A:0.80, C:0.06, G:0.04, T:0.10
Consensus pattern (26 bp):
AAAAAACTAAAAAACAAAGAAAAATT
Found at i:9750189 original size:14 final size:14
Alignment explanation
Indices: 9750166--9750192 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9750156 AACCCCAATG
9750166 TTGAAACCCTAAAA
1 TTGAAACCCTAAAA
9750180 TTGAAACCCTAAA
1 TTGAAACCCTAAA
9750193 TCTGAGGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (14 bp):
TTGAAACCCTAAAA
Found at i:9750244 original size:19 final size:19
Alignment explanation
Indices: 9750220--9750270 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
9750210 AAGCTCTAGG
9750220 TGAAA-CTTGAAACCCAAAT
1 TGAAACCTT-AAACCCAAAT
*
9750239 TGAAACCTTAAACCCAAAG
1 TGAAACCTTAAACCCAAAT
* *
9750258 TAAAACCTAAAAC
1 TGAAACCTTAAAC
9750271 TCTTAATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 25 0.89
20 3 0.11
ACGTcount: A:0.51, C:0.24, G:0.08, T:0.18
Consensus pattern (19 bp):
TGAAACCTTAAACCCAAAT
Done.