Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 54 of 105
Found at i:10339282 original size:69 final size:66
Alignment explanation
Indices: 10339103--10339297 Score: 210
Period size: 69 Copynumber: 2.8 Consensus size: 66
10339093 GATAAAAATG
* * *
10339103 ATGAGAATCTTTGAGTTTTAAATGAGAATCTTTAAGAAGTTTCAAATGAGAATATTTAAGAAGTT
1 ATGAGAATCTTAGAGTTTTAAATGAGAATCTTT--G-AGTTTTAAATGAGAATCTTTAAGAAGTT
10339168 TTAA
63 TTAA
* * * * * *
10339172 ATGAGAATCTTTGAGTTTTAAATAAGAATCTTTAATAAGTTTTGAATAAGGATCTTTAAGAAGTT
1 ATGAGAATCTTAGAGTTTTAAATGAGAATC-TT--TGAGTTTTAAATGAGAATCTTTAAGAAGTT
10339237 TTAA
63 TTAA
* *
10339241 ATGAGAATCATTAAGAAGTTTTAAATGACAATCTTTGAGTTTTAAATGAGCATCTTT
1 ATGAGAATC-TT-AG-AGTTTTAAATGAGAATCTTTGAGTTTTAAATGAGAATCTTT
10339298 GAAAGAGAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
69 83 0.78
70 4 0.04
71 3 0.03
72 16 0.15
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (66 bp):
ATGAGAATCTTAGAGTTTTAAATGAGAATCTTTGAGTTTTAAATGAGAATCTTTAAGAAGTTTTA
A
Found at i:10339327 original size:41 final size:41
Alignment explanation
Indices: 10339272--10339378 Score: 171
Period size: 41 Copynumber: 2.6 Consensus size: 41
10339262 TAAATGACAA
*
10339272 TCTTTGAGTTTTAAATGAGCATCTTTGAAA-GAGAATCTTTG
1 TCTTTGAGTTTTAAATGAGAATCTTT-AAATGAGAATCTTTG
*
10339313 TTTTTGAGTTTTAAATGAGAATCTTTAAATGAGAATCTTTG
1 TCTTTGAGTTTTAAATGAGAATCTTTAAATGAGAATCTTTG
*
10339354 TCTTTGAGTTTTAAATAAGAATCTT
1 TCTTTGAGTTTTAAATGAGAATCTT
10339379 GAGAATTTGT
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 3 0.05
41 58 0.95
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (41 bp):
TCTTTGAGTTTTAAATGAGAATCTTTAAATGAGAATCTTTG
Found at i:10339341 original size:14 final size:14
Alignment explanation
Indices: 10339322--10339352 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
10339312 GTTTTTGAGT
10339322 TTTAAATGAGAATC
1 TTTAAATGAGAATC
10339336 TTTAAATGAGAATC
1 TTTAAATGAGAATC
10339350 TTT
1 TTT
10339353 GTCTTTGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (14 bp):
TTTAAATGAGAATC
Found at i:10339959 original size:17 final size:17
Alignment explanation
Indices: 10339886--10339964 Score: 65
Period size: 17 Copynumber: 4.8 Consensus size: 17
10339876 AATTTTGAGA
*
10339886 ATTAAATTCTTGCAAA-
1 ATTAAATTCTTACAAAT
*
10339902 ATTGAAA-TCTTACAGAT
1 ATT-AAATTCTTACAAAT
*
10339919 -TTAAATTTTTACAAAT
1 ATTAAATTCTTACAAAT
* *
10339935 ATAAAATTCTTGCAAAT
1 ATTAAATTCTTACAAAT
* *
10339952 ATTTAATTTTTAC
1 ATTAAATTCTTAC
10339965 GAATTTGAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
15 3 0.06
16 20 0.42
17 25 0.52
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.43
Consensus pattern (17 bp):
ATTAAATTCTTACAAAT
Found at i:10340139 original size:71 final size:71
Alignment explanation
Indices: 10340020--10340151 Score: 194
Period size: 71 Copynumber: 1.9 Consensus size: 71
10340010 CAAATCTTAG
* * *
10340020 ATCTTTACAAATCTTTACAATTGCTAAACTTTGAAATTCTTTGTGAATCTTAGAATCTTTGTGGA
1 ATCTTTACAAATCTTTACAATTGATAAACTTTGAAATTCTTTGCGAATCTTAGAACCTTTGTGGA
10340085 TTTTTT
66 TTTTTT
* **
10340091 ATCTTTGCAAATCTTTACAATT-ATGAATTTTTGAAATTCTTTGCGAATCTTAGAACCTTTG
1 ATCTTTACAAATCTTTACAATTGAT-AAACTTTGAAATTCTTTGCGAATCTTAGAACCTTTG
10340152 AAAAACTTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
70 1 0.02
71 53 0.98
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (71 bp):
ATCTTTACAAATCTTTACAATTGATAAACTTTGAAATTCTTTGCGAATCTTAGAACCTTTGTGGA
TTTTTT
Found at i:10340198 original size:19 final size:19
Alignment explanation
Indices: 10340172--10340253 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
10340162 AATCTTTGTG
10340172 AATCTTGGAA-CTTTTAACA
1 AATCTTGGAATCTTTT-ACA
*
10340191 ATTCTTGGAATCTTTTACA
1 AATCTTGGAATCTTTTACA
* * *
10340210 AATCTTGAAATTTTTTGCA
1 AATCTTGGAATCTTTTACA
* * * *
10340229 AACCTTTGAATTTTTTACG
1 AATCTTGGAATCTTTTACA
10340248 AATCTT
1 AATCTT
10340254 AAATATTGCG
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
19 46 0.90
20 5 0.10
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (19 bp):
AATCTTGGAATCTTTTACA
Found at i:10340407 original size:20 final size:20
Alignment explanation
Indices: 10340374--10340463 Score: 58
Period size: 20 Copynumber: 4.3 Consensus size: 20
10340364 TTAAATTCAA
* *
10340374 AATTGAGAAACTTTGAATTT
1 AATTGCGAACCTTTGAATTT
* *
10340394 AATTGCGAACCTTTAAGATTC
1 AATTGCGAACCTTTGA-ATTT
*
10340415 AAGTTGGGAATCC-TTGAATTT
1 AA-TTGCGAA-CCTTTGAATTT
*
10340436 CAATTGCGAA-TTTTGAATCTT
1 -AATTGCGAACCTTTGAAT-TT
*
10340457 TATTGCG
1 AATTGCG
10340464 GATTCGAATC
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
20 25 0.46
21 16 0.30
22 11 0.20
23 2 0.04
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (20 bp):
AATTGCGAACCTTTGAATTT
Found at i:10340409 original size:42 final size:43
Alignment explanation
Indices: 10340362--10340445 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 43
10340352 TTTTGCAAGT
*
10340362 CTTTAA-ATTCAAAATTGAGAAACTTTGAATTT-AATTGCGAAC
1 CTTTAAGATTC-AAATTGAGAAACCTTGAATTTCAATTGCGAAC
* * *
10340404 CTTTAAGATTCAAGTTGGGAATCCTTGAATTTCAATTGCGAA
1 CTTTAAGATTCAAATTGAGAAACCTTGAATTTCAATTGCGAA
10340446 TTTTGAATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 23 0.64
43 13 0.36
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (43 bp):
CTTTAAGATTCAAATTGAGAAACCTTGAATTTCAATTGCGAAC
Found at i:10345683 original size:28 final size:28
Alignment explanation
Indices: 10345639--10345697 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
10345629 ATGTTTTAAA
*
10345639 GATTGATGTGTAGGAGATATTAATAATG
1 GATTGATGTGTAGGAGATATCAATAATG
10345667 GATTGATGTGT-GAGAGATATCAATAATG
1 GATTGATGTGTAG-GAGATATCAATAATG
10345695 GAT
1 GAT
10345698 GAAATAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.34
Consensus pattern (28 bp):
GATTGATGTGTAGGAGATATCAATAATG
Found at i:10345716 original size:7 final size:8
Alignment explanation
Indices: 10345699--10345797 Score: 103
Period size: 8 Copynumber: 12.1 Consensus size: 8
10345689 ATAATGGATG
10345699 AAATAAAA
1 AAATAAAA
10345707 AAATAAAA
1 AAATAAAA
10345715 AAATGAAGAA
1 AAAT-AA-AA
*
10345725 AAAAATAAA
1 AAATA-AAA
10345734 AAAT-AAA
1 AAATAAAA
10345741 AAATAAAA
1 AAATAAAA
10345749 AAATAAAA
1 AAATAAAA
10345757 AAAT-AAA
1 AAATAAAA
10345764 AAATGAAAA
1 AAAT-AAAA
* *
10345773 AAGTGAAA
1 AAATAAAA
*
10345781 AAATGAAA
1 AAATAAAA
*
10345789 AAAGAAAA
1 AAATAAAA
10345797 A
1 A
10345798 TGAGAGAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
7 14 0.18
8 44 0.56
9 14 0.18
10 6 0.08
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (8 bp):
AAATAAAA
Found at i:10345808 original size:16 final size:14
Alignment explanation
Indices: 10345732--10345800 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 14
10345722 GAAAAAAATA
* *
10345732 AAAAATAAAAAATAA
1 AAAAATGAAAAA-AG
* *
10345747 AAAAATAAAAAAATA
1 AAAAATGAAAAAA-G
10345762 AAAAATGAAAAAAGTG
1 AAAAATGAAAAAA--G
10345778 AAAAAATGAAAAAAG
1 -AAAAATGAAAAAAG
10345793 AAAAATGA
1 AAAAATGA
10345801 GAGAAAAGGA
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
14 9 0.18
15 26 0.53
16 1 0.02
17 13 0.27
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.12
Consensus pattern (14 bp):
AAAAATGAAAAAAG
Found at i:10346971 original size:21 final size:21
Alignment explanation
Indices: 10346945--10347135 Score: 195
Period size: 21 Copynumber: 8.6 Consensus size: 21
10346935 GTTAAAAATG
10346945 ATGAGAATCTTTAAGTTTTAA
1 ATGAGAATCTTTAAGTTTTAA
10346966 ATGAGAATCTTTAAAAAGTTTT-A
1 ATGAGAATCTTT---AAGTTTTAA
10346989 ATGAGAATCTTTAAAGAGTTTTAA
1 ATGAGAATCTTT--A-AGTTTTAA
*
10347013 ATGAAAATCTTTGAGAAGTTTTAA
1 ATGAGAATCTTT---AAGTTTTAA
* * *
10347037 ATAAGAATCATTGAGTTTTAA
1 ATGAGAATCTTTAAGTTTTAA
10347058 ATGAGAATCTTTAAGAATTTTTAA
1 ATGAGAATCTTTAAG---TTTTAA
* * *
10347082 ATAAGAATCTTTTAGGTTTAA
1 ATGAGAATCTTTAAGTTTTAA
*
10347103 ATGAGAATCTTTGAGTTTTAA
1 ATGAGAATCTTTAAGTTTTAA
10347124 ATGAGAATCTTT
1 ATGAGAATCTTT
10347136 GTCTTTGAGT
Statistics
Matches: 146, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
21 67 0.46
22 3 0.02
23 19 0.13
24 55 0.38
25 2 0.01
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (21 bp):
ATGAGAATCTTTAAGTTTTAA
Found at i:10347067 original size:45 final size:45
Alignment explanation
Indices: 10346948--10347136 Score: 233
Period size: 45 Copynumber: 4.2 Consensus size: 45
10346938 AAAAATGATG
* * *
10346948 AGAATCTTTAAGTTTTAAATGAGAATCTTTAAAAAGTTTT-AATG
1 AGAATCTTTGAGTTTTAAATGAGAATCTTTAAGAAGTTTTAAATA
* *
10346992 AGAATCTTTAAAGAGTTTTAAATGAAAATCTTTGAGAAGTTTTAAATA
1 AGAATCTTT---GAGTTTTAAATGAGAATCTTTAAGAAGTTTTAAATA
* *
10347040 AGAATCATTGAGTTTTAAATGAGAATCTTTAAGAATTTTTAAATA
1 AGAATCTTTGAGTTTTAAATGAGAATCTTTAAGAAGTTTTAAATA
* * *
10347085 AGAATCTTTTAGGTTTAAATGAGAATCTTT--G-AGTTTTAAATG
1 AGAATCTTTGAGTTTTAAATGAGAATCTTTAAGAAGTTTTAAATA
10347127 AGAATCTTTG
1 AGAATCTTTG
10347137 TCTTTGAGTT
Statistics
Matches: 126, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
42 18 0.14
43 1 0.01
44 9 0.07
45 60 0.48
47 27 0.21
48 11 0.09
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (45 bp):
AGAATCTTTGAGTTTTAAATGAGAATCTTTAAGAAGTTTTAAATA
Found at i:10347620 original size:16 final size:16
Alignment explanation
Indices: 10347601--10347693 Score: 77
Period size: 16 Copynumber: 5.8 Consensus size: 16
10347591 AATTCTTTTG
*
10347601 AATCTAAGTTCTTGCA
1 AATCTAAATTCTTGCA
*
10347617 AATCTAAAATT-TTGAA
1 AATCT-AAATTCTTGCA
10347633 AATC-AAATTCTTGCAA
1 AATCTAAATTCTTGC-A
*
10347649 AAT-TGAAA-TCTTACA
1 AATCT-AAATTCTTGCA
* *
10347664 AATTTAAATTCTTACA
1 AATCTAAATTCTTGCA
10347680 AATCTAAAATTCTT
1 AATCT-AAATTCTT
10347694 ACGAATCTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.08
15 10 0.16
16 34 0.53
17 15 0.23
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (16 bp):
AATCTAAATTCTTGCA
Found at i:10347646 original size:31 final size:32
Alignment explanation
Indices: 10347609--10347695 Score: 90
Period size: 31 Copynumber: 2.7 Consensus size: 32
10347599 TGAATCTAAG
10347609 TTCTTGCAAATCTAAAATTTTGA-AAA-TCAAA
1 TTCTTGCAAATCTAAAATTTT-ACAAATTCAAA
* * *
10347640 TTCTTGCAAAAT-TGAAATCTTACAAATTTAAA
1 TTCTTGC-AAATCTAAAATTTTACAAATTCAAA
*
10347672 TTCTTACAAATCTAAAATTCTTAC
1 TTCTTGCAAATCTAAAATT-TTAC
10347696 GAATCTTTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
30 1 0.02
31 21 0.47
32 19 0.42
33 4 0.09
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.38
Consensus pattern (32 bp):
TTCTTGCAAATCTAAAATTTTACAAATTCAAA
Found at i:10347691 original size:17 final size:17
Alignment explanation
Indices: 10347609--10347731 Score: 89
Period size: 17 Copynumber: 7.5 Consensus size: 17
10347599 TGAATCTAAG
*
10347609 TTCTTGCAAATCTAAAA
1 TTCTTACAAATCTAAAA
10347626 TT-TTGA-AAATC--AAA
1 TTCTT-ACAAATCTAAAA
* *
10347640 TTCTTGCAAAAT-TGAAA
1 TTCTTAC-AAATCTAAAA
*
10347657 -TCTTACAAAT-TTAAA
1 TTCTTACAAATCTAAAA
10347672 TTCTTACAAATCTAAAA
1 TTCTTACAAATCTAAAA
* **
10347689 TTCTTACGAATCTTTAA
1 TTCTTACAAATCTAAAA
* *
10347706 TCCTTACGAATCTAAAAA
1 TTCTTACAAATCT-AAAA
10347724 TTCTTACA
1 TTCTTACA
10347732 GAACTGAAAA
Statistics
Matches: 84, Mismatches: 13, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
14 5 0.06
15 10 0.12
16 26 0.31
17 35 0.42
18 8 0.10
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.37
Consensus pattern (17 bp):
TTCTTACAAATCTAAAA
Found at i:10347718 original size:34 final size:34
Alignment explanation
Indices: 10347657--10347731 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
10347647 AAAATTGAAA
*
10347657 TCTTACAAATTTAAATTCTTACAAATCT-AAAAT
1 TCTTACAAATTTAAATCCTTACAAATCTAAAAAT
* * *
10347690 TCTTACGAATCTTTAATCCTTACGAATCTAAAAAT
1 TCTTACAAAT-TTAAATCCTTACAAATCTAAAAAT
10347725 TCTTACA
1 TCTTACA
10347732 GAACTGAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 9 0.26
34 15 0.43
35 11 0.31
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.39
Consensus pattern (34 bp):
TCTTACAAATTTAAATCCTTACAAATCTAAAAAT
Found at i:10347923 original size:36 final size:37
Alignment explanation
Indices: 10347883--10347953 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 37
10347873 CGAATATTAA
* * * *
10347883 AACCTTTGTAAAACTTGTAATC-TTTATGAATCTTGG
1 AACCTTTGCAAAACATGGAATCTTTTACGAATCTTGG
*
10347919 AACCTTTGCAAATCATGGAATCTTTTACGAATCTT
1 AACCTTTGCAAAACATGGAATCTTTTACGAATCTT
10347954 AAATCTTGCG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
36 18 0.62
37 11 0.38
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (37 bp):
AACCTTTGCAAAACATGGAATCTTTTACGAATCTTGG
Found at i:10347958 original size:18 final size:16
Alignment explanation
Indices: 10347943--10347988 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
10347933 ATGGAATCTT
10347943 TTACGAATCTTAAATC
1 TTACGAATCTTAAATC
*
10347959 TTGCGAATCTTTAAATCC
1 TTACGAATC-TTAAAT-C
10347977 TTACGAATCTTA
1 TTACGAATCTTA
10347989 TATTTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 8 0.31
17 9 0.35
18 9 0.35
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (16 bp):
TTACGAATCTTAAATC
Found at i:10348019 original size:20 final size:20
Alignment explanation
Indices: 10347996--10348033 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10347986 TTATATTTTT
10347996 TTGTGAAAT-TTTGAATTTAA
1 TTGT-AAATCTTTGAATTTAA
10348016 TTGTAAATCTTTGAATTT
1 TTGTAAATCTTTGAATTT
10348034 TTTAGAGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.53
Consensus pattern (20 bp):
TTGTAAATCTTTGAATTTAA
Found at i:10348150 original size:20 final size:20
Alignment explanation
Indices: 10348085--10348152 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
10348075 ATTGAGAATC
**
10348085 TTTGAATTT-AATTGTGAACA
1 TTTGAATTTCAATTGTG-AGT
*
10348105 TTTGAGATTCCAATTG-GAGT
1 TTTGA-ATTTCAATTGTGAGT
*
10348125 CCTTGAATTTCAATTGTGAGT
1 -TTTGAATTTCAATTGTGAGT
10348146 TTTGAAT
1 TTTGAAT
10348153 ATTTATTGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
20 21 0.55
21 12 0.32
22 5 0.13
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (20 bp):
TTTGAATTTCAATTGTGAGT
Found at i:10348921 original size:12 final size:13
Alignment explanation
Indices: 10348906--10348942 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
10348896 TAATTTTCTA
10348906 TTTATTTATTTG-
1 TTTATTTATTTGT
*
10348918 TTTATTTTTTTGT
1 TTTATTTATTTGT
10348931 TTTATTTATTTG
1 TTTATTTATTTG
10348943 ACTATTTACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (13 bp):
TTTATTTATTTGT
Found at i:10353811 original size:15 final size:15
Alignment explanation
Indices: 10353791--10353824 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
10353781 TATTTTTAAG
10353791 ATAACAACAACAACA
1 ATAACAACAACAACA
10353806 ATAACAACAACAACA
1 ATAACAACAACAACA
10353821 ATAA
1 ATAA
10353825 TAATAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.09
Consensus pattern (15 bp):
ATAACAACAACAACA
Found at i:10357768 original size:23 final size:23
Alignment explanation
Indices: 10357735--10357781 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
10357725 TTCTGTTCAA
10357735 GCTACTACAAACGTTGAATGGGT
1 GCTACTACAAACGTTGAATGGGT
*
10357758 GCTACTGCAAACGTTGAATGGGT
1 GCTACTACAAACGTTGAATGGGT
10357781 G
1 G
10357782 GAACGAGCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (23 bp):
GCTACTACAAACGTTGAATGGGT
Found at i:10357861 original size:49 final size:49
Alignment explanation
Indices: 10357805--10357997 Score: 305
Period size: 49 Copynumber: 3.9 Consensus size: 49
10357795 TTCATTGAGG
* * *
10357805 GATCAGGTTCTGTTGAAGCTGCTGCAAACGTCGAATGGGTTCTGTTAAA
1 GATCAGGATCTGTTGAAGCTGCTGCAAACGTCAAATGGGTTCTGTTCAA
* *
10357854 GATCAGGTTCTGTTGAAGCTACTGCAAACGTCAAATGGGTTCTGTTCAA
1 GATCAGGATCTGTTGAAGCTGCTGCAAACGTCAAATGGGTTCTGTTCAA
* *
10357903 GATCAGGATCTGTTGAAGCTGTTGTAAACGTCAAATGGGTTCTGTTCAA
1 GATCAGGATCTGTTGAAGCTGCTGCAAACGTCAAATGGGTTCTGTTCAA
* *
10357952 GATCAGGATCTGTTGAAGCTGCTGTAAACGTCGAATGGGTTCTGTT
1 GATCAGGATCTGTTGAAGCTGCTGCAAACGTCAAATGGGTTCTGTT
10357998 GAAGCTGCTG
Statistics
Matches: 135, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 135 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (49 bp):
GATCAGGATCTGTTGAAGCTGCTGCAAACGTCAAATGGGTTCTGTTCAA
Found at i:10357996 original size:32 final size:32
Alignment explanation
Indices: 10357960--10358067 Score: 108
Period size: 32 Copynumber: 3.2 Consensus size: 32
10357950 AAGATCAGGA
10357960 TCTGTTGAAGCTGCTGTAAACGTCGAATGGGT
1 TCTGTTGAAGCTGCTGTAAACGTCGAATGGGT
* *
10357992 TCTGTTGAAGCTGCTGCTACTGCAAACTTTGAATGGGT
1 TCTGTTGAAGCTGCTG----T--AAACGTCGAATGGGT
* * * *
10358030 TCTGTTGAAGCTGCTGCAAATGACGAATGAGT
1 TCTGTTGAAGCTGCTGTAAACGTCGAATGGGT
10358062 TCTGTT
1 TCTGTT
10358068 CAAGATTAGG
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
32 32 0.52
36 1 0.02
38 29 0.47
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (32 bp):
TCTGTTGAAGCTGCTGTAAACGTCGAATGGGT
Found at i:10358106 original size:49 final size:49
Alignment explanation
Indices: 10358030--10358154 Score: 187
Period size: 49 Copynumber: 2.6 Consensus size: 49
10358020 TTGAATGGGT
* * *
10358030 TCTGTTGAAGCTGCTGCAAATGACGAATGAGTTCTGTTCAAGATTAGGA
1 TCTGTTGAAGCTGCTGCAAATGTCGAATGAGTTCTGTTCAAGATCAAGA
* * *
10358079 TCTGTTGAAGCTGCTGCAAACGTCGAATGGGTTCTGTTCAAGATCAAGT
1 TCTGTTGAAGCTGCTGCAAATGTCGAATGAGTTCTGTTCAAGATCAAGA
*
10358128 TCTGTTGAAGTTGCTGCAAATGTCGAA
1 TCTGTTGAAGCTGCTGCAAATGTCGAA
10358155 CGCTGCTGCA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 68 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (49 bp):
TCTGTTGAAGCTGCTGCAAATGTCGAATGAGTTCTGTTCAAGATCAAGA
Found at i:10358166 original size:68 final size:68
Alignment explanation
Indices: 10358088--10358275 Score: 313
Period size: 68 Copynumber: 2.8 Consensus size: 68
10358078 ATCTGTTGAA
* * *
10358088 GCTGCTGCAAACGTCGAATGGGTTCTGTTCAAGATCAAGTTCTGTTGAAGTTGCTGCAAATGTCG
1 GCTGCTGCAAACGTCGAATGGGTTCTGTTCAAGATCAGGTTCTGTTGAAGCTGCTGCAAACGTCG
10358153 AAC
66 AAC
*
10358156 GCTGCTGCAAACGTCGAATGGGTTCTGTTCAAGATCAGGTTCTGTTGAAGCTGCTGCAAACGTTG
1 GCTGCTGCAAACGTCGAATGGGTTCTGTTCAAGATCAGGTTCTGTTGAAGCTGCTGCAAACGTCG
10358221 AAC
66 AAC
* * *
10358224 GCTGCTGCAAACTTCGAATGGGTTCTGTTCAAGATCGGGTTCTGTTCAAGCT
1 GCTGCTGCAAACGTCGAATGGGTTCTGTTCAAGATCAGGTTCTGTTGAAGCT
10358276 TTTTAGATAG
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 113 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (68 bp):
GCTGCTGCAAACGTCGAATGGGTTCTGTTCAAGATCAGGTTCTGTTGAAGCTGCTGCAAACGTCG
AAC
Found at i:10358222 original size:18 final size:19
Alignment explanation
Indices: 10358199--10358235 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
10358189 ATCAGGTTCT
10358199 GTTGAA-GCTGCTGCAAAC
1 GTTGAACGCTGCTGCAAAC
10358217 GTTGAACGCTGCTGCAAAC
1 GTTGAACGCTGCTGCAAAC
10358236 TTCGAATGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (19 bp):
GTTGAACGCTGCTGCAAAC
Found at i:10359771 original size:17 final size:17
Alignment explanation
Indices: 10359749--10359782 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10359739 ATTATGGATT
10359749 ATTCATTATGATATCAA
1 ATTCATTATGATATCAA
*
10359766 ATTCATTATGCTATCAA
1 ATTCATTATGATATCAA
10359783 TGAAATGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (17 bp):
ATTCATTATGATATCAA
Found at i:10360077 original size:21 final size:21
Alignment explanation
Indices: 10360053--10360094 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
10360043 AGTACATACC
10360053 ATGCATAATAT-GATTGTAGAT
1 ATGCATAATATAG-TTGTAGAT
10360074 ATGCATAATATAGTTGTAGAT
1 ATGCATAATATAGTTGTAGAT
10360095 CTGTTCACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (21 bp):
ATGCATAATATAGTTGTAGAT
Found at i:10362698 original size:2 final size:2
Alignment explanation
Indices: 10362691--10362716 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10362681 CTGGAAATAC
10362691 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10362717 CAACCATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10365356 original size:12 final size:12
Alignment explanation
Indices: 10365341--10365376 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
10365331 AATATTTTTG
10365341 TTAATTAATATA
1 TTAATTAATATA
* *
10365353 TTAAATAATATT
1 TTAATTAATATA
10365365 TTAATTAATATA
1 TTAATTAATATA
10365377 ATACATATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAATTAATATA
Found at i:10367718 original size:29 final size:29
Alignment explanation
Indices: 10367695--10367757 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
10367685 GGTTTGGCAT
10367695 TTTGGA-ATTTAGGGTTTCAAGTTTAGGA
1 TTTGGATATTTAGGGTTTCAAGTTTAGGA
* * *
10367723 TTTGGATGTTTAGGGTTTCGATTTTAGGA
1 TTTGGATATTTAGGGTTTCAAGTTTAGGA
*
10367752 CTTGGA
1 TTTGGA
10367758 GGGTTTAGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 6 0.20
29 24 0.80
ACGTcount: A:0.21, C:0.05, G:0.30, T:0.44
Consensus pattern (29 bp):
TTTGGATATTTAGGGTTTCAAGTTTAGGA
Found at i:10367735 original size:15 final size:15
Alignment explanation
Indices: 10367715--10367770 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
10367705 AGGGTTTCAA
10367715 GTTTAGGATTTGGAT
1 GTTTAGGATTTGGAT
* *
10367730 GTTTAGGGTTTCGAT
1 GTTTAGGATTTGGAT
* *
10367745 -TTTAGGACTTGGAGG
1 GTTTAGGATTTGGA-T
10367760 GTTTAGGATTT
1 GTTTAGGATTT
10367771 AGTTTTAGGG
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
14 10 0.31
15 13 0.41
16 9 0.28
ACGTcount: A:0.18, C:0.04, G:0.34, T:0.45
Consensus pattern (15 bp):
GTTTAGGATTTGGAT
Found at i:10367750 original size:14 final size:14
Alignment explanation
Indices: 10367702--10367750 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
10367692 CATTTTGGAA
* *
10367702 TTTAGGGTTTCAAG
1 TTTAGGGTTTCGAT
* *
10367716 TTTAGGATTTGGAT
1 TTTAGGGTTTCGAT
10367730 GTTTAGGGTTTCGAT
1 -TTTAGGGTTTCGAT
10367745 TTTAGG
1 TTTAGG
10367751 ACTTGGAGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.18, C:0.04, G:0.31, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTCGAT
Found at i:10367776 original size:29 final size:28
Alignment explanation
Indices: 10367716--10367822 Score: 101
Period size: 29 Copynumber: 3.7 Consensus size: 28
10367706 GGGTTTCAAG
* *
10367716 TTTAGGATTTGGA-TGTTTAGGGTTTCGAT
1 TTTAGGATTTGGAGGGTTTAGGATTT-G-T
*
10367745 TTTAGGACTTGGAGGGTTTAGGATTTAGT
1 TTTAGGATTTGGAGGGTTTAGGATTT-GT
* *
10367774 TTTAGGGTTTAGAGGGTTTAGGGATTTGT
1 TTTAGGATTTGGAGGGTTTA-GGATTTGT
*
10367803 TTTATGG-TTTGGAAGGTTTA
1 TTTA-GGATTTGGAGGGTTTA
10367823 CAGTTTTGAT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
29 47 0.71
30 19 0.29
ACGTcount: A:0.19, C:0.02, G:0.34, T:0.46
Consensus pattern (28 bp):
TTTAGGATTTGGAGGGTTTAGGATTTGT
Found at i:10367858 original size:16 final size:16
Alignment explanation
Indices: 10367830--10367875 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
10367820 TTACAGTTTT
*
10367830 GATTTCAGGGTTTGAAG
1 GATTT-AGGGTTTGAAA
* *
10367847 GGTTTTGGGTTTGAAA
1 GATTTAGGGTTTGAAA
10367863 GATTTAGGGTTTG
1 GATTTAGGGTTTG
10367876 GAGAGTTTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.37, T:0.41
Consensus pattern (16 bp):
GATTTAGGGTTTGAAA
Found at i:10367884 original size:16 final size:16
Alignment explanation
Indices: 10367836--10367886 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
10367826 TTTTGATTTC
* *
10367836 AGGGTTTGAAGGGTTT
1 AGGGTTTGGAGAGTTT
* *
10367852 TGGGTTT-GAAAGATTT
1 AGGGTTTGGAGAG-TTT
10367868 AGGGTTTGGAGAGTTT
1 AGGGTTTGGAGAGTTT
10367884 AGG
1 AGG
10367887 ATTTTGGTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
15 2 0.07
16 21 0.78
17 4 0.15
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (16 bp):
AGGGTTTGGAGAGTTT
Found at i:10368066 original size:3 final size:3
Alignment explanation
Indices: 10368058--10368090 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
10368048 GAAAACTTAC
10368058 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10368091 ATTTTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:10368228 original size:17 final size:17
Alignment explanation
Indices: 10368206--10368238 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10368196 AAAAAATATT
*
10368206 ATTTTATTCTTATTATC
1 ATTTTATTATTATTATC
10368223 ATTTTATTATTATTAT
1 ATTTTATTATTATTAT
10368239 TTTTTAAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTATTATTATTATC
Found at i:10368415 original size:30 final size:29
Alignment explanation
Indices: 10368353--10368429 Score: 77
Period size: 31 Copynumber: 2.6 Consensus size: 29
10368343 TATCATGCAT
* *
10368353 AAATATTAATAATAAAACTCAAAATAACAA
1 AAATAATAATAATAAAAC-CAAAATAAAAA
10368383 AAATAATAATATATAAAA-CAAAATTAAAAAA
1 AAATAATAATA-ATAAAACCAAAA-T-AAAAA
*
10368414 AAATAA-AAAAATAAAA
1 AAATAATAATAATAAAA
10368430 AATACCTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 11 0.27
30 14 0.34
31 16 0.39
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (29 bp):
AAATAATAATAATAAAACCAAAATAAAAA
Found at i:10370113 original size:37 final size:37
Alignment explanation
Indices: 10370027--10370133 Score: 135
Period size: 37 Copynumber: 2.9 Consensus size: 37
10370017 CGACATCGTG
*
10370027 AGTCAAGAAATAAAGAATCGATTGAGACAACACCGTA
1 AGTCAAGAAATAAAGAATCGATCGAGACAACACCGTA
*** * *
10370064 AGTTGTGGAATAAAAAATCGATC-AGGACAACACCGTA
1 AGTCAAGAAATAAAGAATCGATCGA-GACAACACCGTA
*
10370101 AGTCAAAAAATAAAGAATCGATCGAGACAACAC
1 AGTCAAGAAATAAAGAATCGATCGAGACAACAC
10370134 TGCGAATTGA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
36 1 0.02
37 54 0.96
38 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.19, T:0.16
Consensus pattern (37 bp):
AGTCAAGAAATAAAGAATCGATCGAGACAACACCGTA
Found at i:10370374 original size:132 final size:132
Alignment explanation
Indices: 10370088--10370865 Score: 702
Period size: 131 Copynumber: 5.9 Consensus size: 132
10370078 AAATCGATCA
* * * ** *
10370088 GGACAACACCGTAAGTCAAAAAATAAAGAATCGATCGAGACAACACTGCGAATTGAAATTATGCC
1 GGACGACACCGTAAGTCAAAAAATAAAGAATCAATCGAGACAACACCGCGAATCAAAATTATGCT
** * *
10370153 CAAAGGTCTTGTAGATTATG-CTCGGAGGTCTTAAAAATCATGTCCGAAGATCTTACAGAATCGA
66 CAAAGGTCTTAAAGATTATGCCTCGGAGGTCTTAAAAATCATG-CCGGAGGTCTTACAGAATCGA
*
10370217 CTA
130 CTG
* * * * * * * *
10370220 GGACAACATCATAAGTCAAAAAATAAAGAATCAATTGGGATAACATCGCGAATCGAAATTATGCT
1 GGACGACACCGTAAGTCAAAAAATAAAGAATCAATCGAGACAACACCGCGAATCAAAATTATGCT
* *
10370285 CAAAGGTCTTAAAGATTATGCCTCGGAGGTTTTAGAAATCATGTCCGGAGGTCTTACAGAATCGA
66 CAAAGGTCTTAAAGATTATGCCTCGGAGGTCTTAAAAATCATG-CCGGAGGTCTTACAGAATCGA
10370350 CTG
130 CTG
* * *
10370353 GGATGACACCGTAAGTCAAAAAATAAAGAATCGATCGAGACAACACCACGAATCAAAATTATGCT
1 GGACGACACCGTAAGTCAAAAAATAAAGAATCAATCGAGACAACACCGCGAATCAAAATTATGCT
** * * ** * * *
10370418 CGGAGGTCTTAAAAATTAT-CC-CGAACATTTTAGAAATCATGCTTGGAGGTCTTACAGAATCGA
66 CAAAGGTCTTAAAGATTATGCCTCGGAGGTCTTAAAAATCATGC-CGGAGGTCTTACAGAATCGA
*
10370481 TTG
130 CTG
* * * * * * *
10370484 GGACGACACTGCAAGTCAAAAAATAAGGAA-CGATC-AGGACAATACCGTGAATTAAAATTATGC
1 GGACGACACCGTAAGTCAAAAAATAAAGAATCAATCGA-GACAACACCGCGAATCAAAATTATGC
** * * * *
10370547 -CTAGTGGTCTTAAAGATTATGCCT-AGAGGTCTTAGAAATCATGCCCAGAGGTCTTACAGAATT
65 TC-AAAGGTCTTAAAGATTATGCCTCGGAGGTCTTAAAAATCATG-CCGGAGGTCTTACAGAATC
10370610 GACTG
128 GACTG
* * * * * * *
10370615 GGATGACA-TGCAAGTTAAAAAATAAGGAAT-AGATCGAGACAACACCGCGAATCAAAATTTTAC
1 GGACGACACCGTAAGTCAAAAAATAAAGAATCA-ATCGAGACAACACCGCGAATCAAAATTAT-G
* * *
10370678 CTCAAA-ATCTTAAAGATTATGTC-CGGAGGTCTTAAAAATCATGCTCGGAGGTCTTTCAGAATC
64 CTCAAAGGTCTTAAAGATTATGCCTCGGAGGTCTTAAAAATCATGC-CGGAGGTCTTACAGAATC
*
10370741 GACTA
128 GACTG
* ** * * * * * **
10370746 GGACAACACTATAAGTTAAAAAATAAGGACTCAAT-TAGGACAACATCATGAATCAAAATTATGC
1 GGACGACACCGTAAGTCAAAAAATAAAGAATCAATCGA-GACAACACCGCGAATCAAAATTATGC
* * * *
10370810 -CTAGAGGTCTTAAAGATTAT-ACTCGAAGGTCTTAAAAATCATACCTGGAGGTCTTA
65 TC-AAAGGTCTTAAAGATTATGCCTCGGAGGTCTTAAAAATCATGCC-GGAGGTCTTA
10370866 AAGATTATGC
Statistics
Matches: 534, Mismatches: 91, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
129 2 0.00
130 65 0.12
131 192 0.36
132 161 0.30
133 114 0.21
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (132 bp):
GGACGACACCGTAAGTCAAAAAATAAAGAATCAATCGAGACAACACCGCGAATCAAAATTATGCT
CAAAGGTCTTAAAGATTATGCCTCGGAGGTCTTAAAAATCATGCCGGAGGTCTTACAGAATCGAC
TG
Found at i:10370566 original size:22 final size:21
Alignment explanation
Indices: 10370535--10370602 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 21
10370525 ATACCGTGAA
*
10370535 TTAAAATTATGCCTAGTGGTC
1 TTAAAATTATGCCTAGAGGTC
10370556 TTAAAGATTATGCCTAGAGGTC
1 TTAAA-ATTATGCCTAGAGGTC
* *
10370578 TTAGAAATCATGCCCAGAGGTC
1 TTA-AAATTATGCCTAGAGGTC
10370600 TTA
1 TTA
10370603 CAGAATTGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 5 0.12
22 35 0.83
23 2 0.05
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (21 bp):
TTAAAATTATGCCTAGAGGTC
Found at i:10370829 original size:22 final size:22
Alignment explanation
Indices: 10370803--10370889 Score: 95
Period size: 22 Copynumber: 4.0 Consensus size: 22
10370793 ATGAATCAAA
*
10370803 ATTATGCCTAGAGGTCTTAAAG
1 ATTATGCCTGGAGGTCTTAAAG
* * *
10370825 ATTAT-ACTCGAAGGTCTTAAAA
1 ATTATGCCT-GGAGGTCTTAAAG
* *
10370847 ATCATACCTGGAGGTCTTAAAG
1 ATTATGCCTGGAGGTCTTAAAG
*
10370869 ATTATGCTTGGAGGTCTTAAA
1 ATTATGCCTGGAGGTCTTAAA
10370890 AATCATGCTC
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
21 2 0.04
22 48 0.92
23 2 0.04
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (22 bp):
ATTATGCCTGGAGGTCTTAAAG
Found at i:10370897 original size:22 final size:22
Alignment explanation
Indices: 10370813--10370916 Score: 102
Period size: 22 Copynumber: 4.7 Consensus size: 22
10370803 ATTATGCCTA
* *
10370813 GAGGTCTTAAAGATTATACTCG
1 GAGGTCTTAAAAATCATACTCG
*
10370835 AAGGTCTTAAAAATCATAC-CTG
1 GAGGTCTTAAAAATCATACTC-G
* * * *
10370857 GAGGTCTTAAAGATTATGCTTG
1 GAGGTCTTAAAAATCATACTCG
*
10370879 GAGGTCTTAAAAATCATGCTCG
1 GAGGTCTTAAAAATCATACTCG
*
10370901 GAGGTTTTACAAAATC
1 GAGGTCTTA-AAAATC
10370917 GATCGGGACA
Statistics
Matches: 67, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
21 1 0.01
22 60 0.90
23 6 0.09
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (22 bp):
GAGGTCTTAAAAATCATACTCG
Found at i:10370979 original size:176 final size:176
Alignment explanation
Indices: 10370685--10371041 Score: 479
Period size: 176 Copynumber: 2.0 Consensus size: 176
10370675 TACCTCAAAA
*
10370685 TCTTAAAGATTATGTCCGGAGGTCTTAAAAATCATGCTCGGAGGTCTTTCAGAATCGACTAGGAC
1 TCTTAAAGATTATGTCCGGAGGTCTTAAAAATCATGCTCGGAGGTCTTTCAAAATCGACTAGGAC
* * * * *
10370750 AACACTATAAGTTAAAAAATAAGGACTCAATTAGGACAACATCATGAATCAAAATTATGCCTAGA
66 AACACTATAAGTCAAAAAACAAAGAATCAATTAGGACAACATCACGAATCAAAATTATGCCTAGA
*
10370815 GGTCTTAAAGATTATACTCGAAGGTCTTAAAAATCATACCTGGAGG
131 GGTCTTAAAGATTATACCCGAAGGTCTTAAAAATCATACCTGGAGG
* *
10370861 TCTTAAAGATTATG-CTTGGAGGTCTTAAAAATCATGCTCGGAGGT-TTTACAAAATCGA-TCGG
1 TCTTAAAGATTATGTC-CGGAGGTCTTAAAAATCATGCTCGGAGGTCTTT-CAAAATCGACT-AG
* * * * * * *
10370923 GACAACATTGTAAGTCAAAAAACAAAGAATCGA-TCGGAATAACATCGCGAATCAAAATTATGCT
63 GACAACACTATAAGTCAAAAAACAAAGAATCAATTAGG-ACAACATCACGAATCAAAATTATGCC
* * *
10370987 TAGAGGTCTTAAAGATTATGCCCGAAGGTCTTAGAAATCATGCCTGGAGG
127 TAGAGGTCTTAAAGATTATACCCGAAGGTCTTAAAAATCATACCTGGAGG
10371037 TCTTA
1 TCTTA
10371042 TAGAATCAAC
Statistics
Matches: 158, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
175 8 0.05
176 150 0.95
ACGTcount: A:0.37, C:0.16, G:0.20, T:0.27
Consensus pattern (176 bp):
TCTTAAAGATTATGTCCGGAGGTCTTAAAAATCATGCTCGGAGGTCTTTCAAAATCGACTAGGAC
AACACTATAAGTCAAAAAACAAAGAATCAATTAGGACAACATCACGAATCAAAATTATGCCTAGA
GGTCTTAAAGATTATACCCGAAGGTCTTAAAAATCATACCTGGAGG
Found at i:10371015 original size:22 final size:22
Alignment explanation
Indices: 10370990--10371041 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
10370980 TTATGCTTAG
*
10370990 AGGTCTTA-AAGATTATGCCCGA
1 AGGTCTTAGAA-ATCATGCCCGA
* *
10371012 AGGTCTTAGAAATCATGCCTGG
1 AGGTCTTAGAAATCATGCCCGA
10371034 AGGTCTTA
1 AGGTCTTA
10371042 TAGAATCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (22 bp):
AGGTCTTAGAAATCATGCCCGA
Found at i:10371028 original size:132 final size:130
Alignment explanation
Indices: 10370855--10371283 Score: 425
Period size: 132 Copynumber: 3.3 Consensus size: 130
10370845 AAATCATACC
** * * *
10370855 TGGAGGTCTTAAAGATTATGCTTG-GAGGTCTTAAAAATCATGCTCGGAGGTTTTACAAAATCGA
1 TGGAGGTCTTAAAGATTATGCCCGAGAGGTCTTAAAAATCATGC-CGGAGGTCTTATAGAATC-A
* * * *
10370919 TCGGGACAACATTGTAAGTCAAAAAACAAAGAATCGATCGGAATAACATCGCGAATCAAAATTAT
64 ACGGGACAACATCGCAAGTCAAAAAATAAAGAATCGATCGGAA-AACATCGCGAATCAAAATTAT
10370984 GCT
128 GCT
* *
10370987 TAGAGGTCTTAAAGATTATGCCCGA-AGGTCTTAGAAATCATGCCTGGAGGTCTTATAGAATCAA
1 TGGAGGTCTTAAAGATTATGCCCGAGAGGTCTTAAAAATCATGCC-GGAGGTCTTATAGAATCAA
* *** * * * * * *
10371051 CTAGGATGGCATCGCAAGTTAAAAAATAAAGAATCAATTGGGACAACATCACGAATCGAAATTAT
65 C-GGGACAACATCGCAAGTCAAAAAATAAAGAATCGA-TCGGAAAACATCGCGAATCAAAATTAT
*
10371116 GTT
128 GCT
* * * * * *
10371119 TGGAAGTCTTAAAAATTATG-GCTAGAGGTCTTAAAAATCATGCCCGTAGGTCTTATAGAATTAA
1 TGGAGGTCTTAAAGATTATGCCCGAGAGGTCTTAAAAATCATG-CCGGAGGTCTTATAGAATCAA
* * * * * * *
10371183 CCGAGACAACATCACAAGTCAAAAAATAAGGACTCGATCAAGAAAACACCGTGAATCAAAATTAT
65 -CGGGACAACATCGCAAGTCAAAAAATAAAGAATCGATC-GGAAAACATCGCGAATCAAAATTAT
10371248 GCT
128 GCT
*
10371251 TGGAGGTTTTAAAGATTATGCCC-AGAGGTCTTA
1 TGGAGGTCTTAAAGATTATGCCCGAGAGGTCTTA
10371284 CAGAATTGAT
Statistics
Matches: 236, Mismatches: 52, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
131 6 0.03
132 222 0.94
133 8 0.03
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.26
Consensus pattern (130 bp):
TGGAGGTCTTAAAGATTATGCCCGAGAGGTCTTAAAAATCATGCCGGAGGTCTTATAGAATCAAC
GGGACAACATCGCAAGTCAAAAAATAAAGAATCGATCGGAAAACATCGCGAATCAAAATTATGCT
Found at i:10371377 original size:94 final size:94
Alignment explanation
Indices: 10371216--10371403 Score: 236
Period size: 94 Copynumber: 2.0 Consensus size: 94
10371206 AAATAAGGAC
* * * *
10371216 TCGATCAAGAAAACACCGTGAATCAAAATTATGCTTGGAGGTTTTAAAGATTATGCCCAGAGGTC
1 TCGATCAAGAAAACACCGTGAATCAAAATTATGCCTGAAAGTCTTAAAGATTATGCCCAGAGGTC
10371281 TTACAGAATTGA-TCGAGATAACACCGTAA
66 TTACAGAATTGACT-GAGATAACACCGTAA
* * * * *
10371310 TCGATCAGGATAATACCGTGATTCAAAATTATGCCTGAAAGTCTTAAAGATTATG-CCTGAAGGT
1 TCGATCAAGAAAACACCGTGAATCAAAATTATGCCTGAAAGTCTTAAAGATTATGCCCAG-AGGT
* * *
10371374 CTTATAGAATTGACTGGGATGACACCGTAA
65 CTTACAGAATTGACTGAGATAACACCGTAA
10371404 GTTAAAAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
93 3 0.04
94 76 0.95
95 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (94 bp):
TCGATCAAGAAAACACCGTGAATCAAAATTATGCCTGAAAGTCTTAAAGATTATGCCCAGAGGTC
TTACAGAATTGACTGAGATAACACCGTAA
Found at i:10371613 original size:22 final size:22
Alignment explanation
Indices: 10371579--10371641 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
10371569 GTGAATCAAA
10371579 ATTATGCCCGGAGGTCTTAAAG
1 ATTATGCCCGGAGGTCTTAAAG
* * *
10371601 ATTATGTCTGGAGGTCTTAGAG
1 ATTATGCCCGGAGGTCTTAAAG
* *
10371623 ATCATGCCCAGAGGTCTTA
1 ATTATGCCCGGAGGTCTTA
10371642 CAAATCTCAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (22 bp):
ATTATGCCCGGAGGTCTTAAAG
Found at i:10371619 original size:336 final size:336
Alignment explanation
Indices: 10371001--10371606 Score: 840
Period size: 336 Copynumber: 1.8 Consensus size: 336
10370991 GGTCTTAAAG
* * * *
10371001 ATTATGCCCGAAGGTCTTAGAAATCATGCCTGGAGGTCTTATAGAATCAACTAGGATGGCATCGC
1 ATTATGCCCGAAAGTCTTAGAAATCATGCCTGAAGGTCTTATAGAATCAACTAGGATGACACCGC
* **
10371066 AAGTTAAAAAATAAAGAATCAATTGGGACAACATCACGAATCGAAATTATGTTTGGAAGTCTTAA
66 AAGTTAAAAAATAAAGAATCAATTGGGACAACACCACGAATCGAAATTATGCCTGGAAGTCTTAA
* * * * * * * *
10371131 AAATTATGGCTAGAGGTCTTAAAAATCATGCCCGTAGGTCTTATAGAATTAACCGAGACAACATC
131 AAATTATGCCAAGAGGTATTAAAAATCATGCCCATAAGTCTTACAGAATCAACCGAGACAACACC
** * ** *
10371196 ACAAGTCAAAAAATAAGGACTCGATCAAGAAAACACCGTGAATCAAAATTATGCTTGGAGGTTTT
196 ACAAGTCAAAAAATAAAAAATCGATCAAGAAAACACCGTGAATCAAAATTATGCCCGGAGGTCTT
10371261 AAAGATTATGCCCAGAGGTCTTACAGAATTGATCGAGATAACACCGTAATCGATCAGGATAATAC
261 AAAGATTATGCCCAGAGGTCTTACAGAATTGATCGAGATAACACCGTAATCGATCAGGATAATAC
10371326 CGTGATTCAAA
326 CGTGATTCAAA
* * ** *
10371337 ATTATGCCTGAAAGTCTTA-AAGATTATGCCTGAAGGTCTTATAGAATTGACTGGGATGACACCG
1 ATTATGCCCGAAAGTCTTAGAA-ATCATGCCTGAAGGTCTTATAGAATCAACTAGGATGACACCG
* * ** *
10371401 TAAGTTAAAAAATAAGGAATTGATTGGGACAACACCACGAATTGAAATTATGCCT-GAAGGTCTT
65 CAAGTTAAAAAATAAAGAATCAATTGGGACAACACCACGAATCGAAATTATGCCTGGAA-GTCTT
* *
10371465 AAAGATTATGCCAAGAGGTATTAAAAATCATGCCCATAAGTCTTACAGAATCAATCGAGACAACA
129 AAAAATTATGCCAAGAGGTATTAAAAATCATGCCCATAAGTCTTACAGAATCAACCGAGACAACA
* * *
10371530 CCACAGGTCAAAAAATAAAAAATCGATCGAA-ATAACATCGTGAATCAAAATTATGCCCGGAGGT
194 CCACAAGTCAAAAAATAAAAAATCGATC-AAGAAAACACCGTGAATCAAAATTATGCCCGGAGGT
10371594 CTTAAAGATTATG
258 CTTAAAGATTATG
10371607 TCTGGAGGTC
Statistics
Matches: 231, Mismatches: 36, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
335 5 0.02
336 224 0.97
337 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.25
Consensus pattern (336 bp):
ATTATGCCCGAAAGTCTTAGAAATCATGCCTGAAGGTCTTATAGAATCAACTAGGATGACACCGC
AAGTTAAAAAATAAAGAATCAATTGGGACAACACCACGAATCGAAATTATGCCTGGAAGTCTTAA
AAATTATGCCAAGAGGTATTAAAAATCATGCCCATAAGTCTTACAGAATCAACCGAGACAACACC
ACAAGTCAAAAAATAAAAAATCGATCAAGAAAACACCGTGAATCAAAATTATGCCCGGAGGTCTT
AAAGATTATGCCCAGAGGTCTTACAGAATTGATCGAGATAACACCGTAATCGATCAGGATAATAC
CGTGATTCAAA
Found at i:10371942 original size:41 final size:41
Alignment explanation
Indices: 10371883--10371964 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
10371873 ACTTTAAAGG
* *
10371883 TCTTGCTTGAAGAAGGTTCCTCTTAAACAAAGGCTTTGAAA
1 TCTTGATTGAAGAAGGTTCCTCTTAAACAAAGACTTTGAAA
*
10371924 TCTTGATTGAA-AATGGTTCCTCTTAAACAGAGACTTTGAAA
1 TCTTGATTGAAGAA-GGTTCCTCTTAAACAAAGACTTTGAAA
10371965 CTTTAAAATC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.05
41 35 0.95
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (41 bp):
TCTTGATTGAAGAAGGTTCCTCTTAAACAAAGACTTTGAAA
Found at i:10372085 original size:18 final size:18
Alignment explanation
Indices: 10372059--10372103 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
10372049 TCATCAAATA
*
10372059 ATGCTAATGGAAATGTCG
1 ATGCAAATGGAAATGTCG
* *
10372077 ATGCAAATGTAAATGTTG
1 ATGCAAATGGAAATGTCG
10372095 ATGCAAATG
1 ATGCAAATG
10372104 CAAGAATATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (18 bp):
ATGCAAATGGAAATGTCG
Found at i:10374304 original size:10 final size:10
Alignment explanation
Indices: 10374288--10374330 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
10374278 TAGAAAAAAA
10374288 CTTTTTTTTT
1 CTTTTTTTTT
* *
10374298 ATTTTTTTAT
1 CTTTTTTTTT
*
10374308 CTTGTTTTTT
1 CTTTTTTTTT
*
10374318 CTTTTTTTAT
1 CTTTTTTTTT
10374328 CTT
1 CTT
10374331 GAAAGTTACT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.07, C:0.09, G:0.02, T:0.81
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:10374317 original size:20 final size:20
Alignment explanation
Indices: 10374292--10374331 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
10374282 AAAAAACTTT
10374292 TTTTTTATTTTTTTATCTTG
1 TTTTTTATTTTTTTATCTTG
*
10374312 TTTTTTCTTTTTTTATCTTG
1 TTTTTTATTTTTTTATCTTG
10374332 AAAGTTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.07, G:0.05, T:0.80
Consensus pattern (20 bp):
TTTTTTATTTTTTTATCTTG
Found at i:10380408 original size:22 final size:21
Alignment explanation
Indices: 10380357--10380409 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
10380347 ATTTTAAGGT
*
10380357 TTTTGGATTTTAGGGTTTGGCA
1 TTTTGGATTCTAGGGTTT-GCA
10380379 TTTTGGATTCTAGGGTTT-CAA
1 TTTTGGATTCTAGGGTTTGC-A
10380400 TTTTAGGATT
1 TTTT-GGATT
10380410 TGGATGTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 5 0.18
22 22 0.79
ACGTcount: A:0.17, C:0.06, G:0.26, T:0.51
Consensus pattern (21 bp):
TTTTGGATTCTAGGGTTTGCA
Found at i:10380421 original size:15 final size:14
Alignment explanation
Indices: 10380380--10380442 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
10380370 GGTTTGGCAT
* *
10380380 TTTGGATTCTAGGG
1 TTTGGATTTTAGGA
**
10380394 TTTCAATTTTAGGA
1 TTTGGATTTTAGGA
*
10380408 TTTGGATGTTTAGGG
1 TTTGGAT-TTTAGGA
*
10380423 TTTCGATTTTAGGA
1 TTTGGATTTTAGGA
*
10380437 CTTGGA
1 TTTGGA
10380443 GGGTTTAGGG
Statistics
Matches: 37, Mismatches: 11, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
14 25 0.68
15 12 0.32
ACGTcount: A:0.19, C:0.06, G:0.29, T:0.46
Consensus pattern (14 bp):
TTTGGATTTTAGGA
Found at i:10380421 original size:29 final size:29
Alignment explanation
Indices: 10380380--10380455 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
10380370 GGTTTGGCAT
*
10380380 TTTGGAT-TCTAGGGTTTCAATTTTAGGA
1 TTTGGATGTTTAGGGTTTCAATTTTAGGA
*
10380408 TTTGGATGTTTAGGGTTTCGATTTTAGGA
1 TTTGGATGTTTAGGGTTTCAATTTTAGGA
* *
10380437 CTTGGAGGGTTTAGGGTTT
1 TTTGGA-TGTTTAGGGTTT
10380456 AGTTTTGTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 7 0.17
29 24 0.57
30 11 0.26
ACGTcount: A:0.17, C:0.05, G:0.32, T:0.46
Consensus pattern (29 bp):
TTTGGATGTTTAGGGTTTCAATTTTAGGA
Found at i:10380435 original size:14 final size:14
Alignment explanation
Indices: 10380384--10380435 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
10380374 TGGCATTTTG
*
10380384 GATTCTAGGGTTTC
1 GATTTTAGGGTTTC
* * *
10380398 AATTTTAGGATTTG
1 GATTTTAGGGTTTC
10380412 GATGTTTAGGGTTTC
1 GAT-TTTAGGGTTTC
10380427 GATTTTAGG
1 GATTTTAGG
10380436 ACTTGGAGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.19, C:0.06, G:0.29, T:0.46
Consensus pattern (14 bp):
GATTTTAGGGTTTC
Found at i:10380461 original size:29 final size:28
Alignment explanation
Indices: 10380389--10380543 Score: 109
Period size: 29 Copynumber: 5.3 Consensus size: 28
10380379 TTTTGGATTC
* *
10380389 TAGGGTTTCAATTTTAGGATTTGGA-TGTT
1 TAGGGTTT-AGTTTTAGG-TTTGGAGGGTT
* *
10380418 TAGGGTTTCGATTTTAGGACTTGGAGGGTT
1 TAGGGTTTAG-TTTTAGG-TTTGGAGGGTT
*
10380448 TAGGGTTTAGTTTT-GTTGTTTAGAGGGTT
1 TAGGGTTTAGTTTTAG--GTTTGGAGGGTT
10380477 TAGGGATTT-GTTTTATGGTTTGGAGGGTT
1 TAGGG-TTTAGTTTTA-GGTTTGGAGGGTT
* * * *
10380506 TAGAGTTTTGATTTCAGGGTTTGAAGGGTT
1 TAGGGTTTAG-TTTTA-GGTTTGGAGGGTT
*
10380536 TTGGGTTT
1 TAGGGTTT
10380544 GAAAGATTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 17
0.77 0.10 0.13
Matches are distributed among these distances:
28 4 0.04
29 60 0.58
30 38 0.37
31 1 0.01
ACGTcount: A:0.16, C:0.03, G:0.34, T:0.47
Consensus pattern (28 bp):
TAGGGTTTAGTTTTAGGTTTGGAGGGTT
Found at i:10380534 original size:30 final size:29
Alignment explanation
Indices: 10380471--10380536 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
10380461 TGTTGTTTAG
* * * *
10380471 AGGGTTTAGGGATTTGTTTTATGGTTTGG
1 AGGGTTTAGAGATTTGTTTCAGGGTTTGA
*
10380500 AGGGTTTAGAGTTTTGATTTCAGGGTTTGA
1 AGGGTTTAGAGATTTG-TTTCAGGGTTTGA
10380530 AGGGTTT
1 AGGGTTT
10380537 TGGGTTTGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 14 0.45
30 17 0.55
ACGTcount: A:0.17, C:0.02, G:0.36, T:0.45
Consensus pattern (29 bp):
AGGGTTTAGAGATTTGTTTCAGGGTTTGA
Found at i:10380557 original size:16 final size:16
Alignment explanation
Indices: 10380515--10380559 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
10380505 TTAGAGTTTT
*
10380515 GATTTCAGGGTTTGAAG
1 GATTT-AGGGTTTGAAA
* *
10380532 GGTTTTGGGTTTGAAA
1 GATTTAGGGTTTGAAA
10380548 GATTTAGGGTTT
1 GATTTAGGGTTT
10380560 AGTTTTGGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.36, T:0.42
Consensus pattern (16 bp):
GATTTAGGGTTTGAAA
Found at i:10380598 original size:14 final size:13
Alignment explanation
Indices: 10380579--10380622 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
10380569 GTTTGGAGAG
10380579 TTTAGGATTTTGGT
1 TTTAGG-TTTTGGT
10380593 TTTAGGTTTTCGGT
1 TTTAGGTTTT-GGT
*
10380607 TTTAGGGTTTAGGT
1 TTTA-GGTTTTGGT
10380621 TT
1 TT
10380623 GTTAATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 4 0.15
14 18 0.67
15 5 0.19
ACGTcount: A:0.11, C:0.02, G:0.30, T:0.57
Consensus pattern (13 bp):
TTTAGGTTTTGGT
Found at i:10380760 original size:3 final size:3
Alignment explanation
Indices: 10380752--10380792 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
10380742 TTATGAAAAC
* *
10380752 TTA TTA TTA TTA TCA -AA TTA TTA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10380793 ATTTTTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
2 3 0.09
3 30 0.91
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:10381145 original size:26 final size:25
Alignment explanation
Indices: 10381106--10381157 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
10381096 AATATATAAA
* *
10381106 ATAAAATTAGAAAATTTTAAAAAAAT
1 ATAAAAATAGAAAA-TATAAAAAAAT
*
10381132 ATAAAAATATAAAATATAAAAAAAT
1 ATAAAAATAGAAAATATAAAAAAAT
10381157 A
1 A
10381158 CCTAAACTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (25 bp):
ATAAAAATAGAAAATATAAAAAAAT
Found at i:10384095 original size:4 final size:4
Alignment explanation
Indices: 10384086--10384144 Score: 57
Period size: 4 Copynumber: 14.5 Consensus size: 4
10384076 AATTATCTAC
* * * *
10384086 TTAT TTAT TTAT TTGT TTGT TTAT TTCAT TTAT TT-T ACTAT TTAT GTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT-AT TTAT TTAT -TTAT TTAT TTAT
10384135 TTAT TTAT TT
1 TTAT TTAT TT
10384145 GAAAATATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
3 1 0.02
4 40 0.87
5 5 0.11
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.71
Consensus pattern (4 bp):
TTAT
Found at i:10384254 original size:57 final size:56
Alignment explanation
Indices: 10384191--10384307 Score: 155
Period size: 57 Copynumber: 2.1 Consensus size: 56
10384181 ATATTTTTTA
* * *
10384191 AAAAAGAATCTTACCAACATATTGGATGGTTCAAATTTTTTAAATAAA-TGTTTAAAT
1 AAAAAGAATCTGACCAACATATTGGAAGATTCAAA-TTTTT-AATAAATTGTTTAAAT
* * *
10384248 AAAAAGAATCTGACCAATATATTTGAAGATTCAAATTTTTAATAAATTGTTTTAAT
1 AAAAAGAATCTGACCAACATATTGGAAGATTCAAATTTTTAATAAATTGTTTAAAT
10384304 AAAA
1 AAAA
10384308 CAAAAACACT
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
55 6 0.11
56 17 0.32
57 30 0.57
ACGTcount: A:0.46, C:0.08, G:0.09, T:0.37
Consensus pattern (56 bp):
AAAAAGAATCTGACCAACATATTGGAAGATTCAAATTTTTAATAAATTGTTTAAAT
Found at i:10388056 original size:1 final size:1
Alignment explanation
Indices: 10388052--10388078 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
10388042 TCTTTTTCTG
10388052 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
10388079 CTAAAACCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:10390597 original size:162 final size:161
Alignment explanation
Indices: 10390386--10391222 Score: 866
Period size: 161 Copynumber: 5.2 Consensus size: 161
10390376 CATTATCGTT
* ** * ** * *
10390386 TATTCAAGCTATCTAAGCCATTAAAATAGAAGTATAGCAATATATTTACATTTTTGCCCTTTTAT
1 TATTCAAGCTATCTAAACTGTTAAAATAGAAATATAGCAGCAAATTTATATTTTTGCCCTTTTAT
* ** *
10390451 AACACAAAAAGTGCTAAAAACACATAAGCTGTAACTTTTTTCATGCATATCAAAG-TTGAAAGCC
66 AGCATGAAAAGTGCTAAAAACACATAA-CTGTAACTTTTTTCATGCATATC-AAGCTTGGAAGCC
*
10390515 AAGCTTAAACATTTGGACAAGTTTAATATCATA
129 AAGCTTAAACATTTGGACAAGTTTAATATCATG
* * * *
10390548 TATTCAAGCTATCTAAACTGTTAAAATAGAAATATAGCAACAAATTTACATTTTTGCTCTTTTAC
1 TATTCAAGCTATCTAAACTGTTAAAATAGAAATATAGCAGCAAATTTATATTTTTGCCCTTTTAT
* * *
10390613 AGCATGAAAAGTGATAAAAACACATGAACTGTAAC-TTTTTCATGCATATCATGCATGGCAA-CC
66 AGCATGAAAAGTGCTAAAAACACAT-AACTGTAACTTTTTTCATGCATATCAAGCTTGG-AAGCC
* *
10390676 AAG-TTCAAATATTTGGACAAGTTTAATATCTTG
129 AAGCTT-AAACATTTGGACAAGTTTAATATCATG
** * * * ** *
10390709 TATTTGAGCTATCTAAATTGTTATAATAGAAATACATTAGTAAATTTATATTTTTGCCCTTTTAT
1 TATTCAAGCTATCTAAACTGTTAAAATAGAAATATAGCAGCAAATTTATATTTTTGCCCTTTTAT
* * ** * *
10390774 GGCTTGAAAAGTGCTAAAAATGCATAAATGTAACTTTTTTCATGCATATCAAG-TGTGGCAGCCA
66 AGCATGAAAAGTGCTAAAAACACATAACTGTAACTTTTTTCATGCATATCAAGCT-TGGAAGCCA
* *** *
10390838 AGCTCAAACATTCATACAATTTTAATATCATG
130 AGCTTAAACATTTGGACAAGTTTAATATCATG
* * * *
10390870 TATTCGAGCTATCTAAACTGTTAAAATAGAAGTATAGTAGCAAATTTATATTTTTGCCATTTTAT
1 TATTCAAGCTATCTAAACTGTTAAAATAGAAATATAGCAGCAAATTTATATTTTTGCCCTTTTAT
* *** * * *
10390935 AGCATGAAAAGTGCTAAAAATACATAAACCACAACTTTTTTCATACATATCAAGCGTGGAAGTCA
66 AGCATGAAAAGTGCTAAAAACACAT-AACTGTAACTTTTTTCATGCATATCAAGCTTGGAAGCCA
*
10391000 AG-TTCAAATATTTGGACAAGTTTAATATCATG
130 AGCTT-AAACATTTGGACAAGTTTAATATCATG
* * * * * *
10391032 TATT-GAGCTATCTAAGCTGTTAAAATAGAAA-CTAGCAGCATATTTATGTTTTTG-CCTTTTAC
1 TATTCAAGCTATCTAAACTGTTAAAATAGAAATATAGCAGCAAATTTATATTTTTGCCCTTTTAT
* * * * * * * *
10391094 GGCATAAAAAATGCTAAAAACACA-AACCGTAACTTTTTTCATGCATATTAAGCATGGCAGTCAA
66 AGCATGAAAAGTGCTAAAAACACATAACTGTAACTTTTTTCATGCATATCAAGCTTGGAAGCCAA
* *** *
10391158 GCTCAAACATTCAAATAAGTTTAATATCATG
131 GCTTAAACATTTGGACAAGTTTAATATCATG
* *
10391189 TATTCAAGCTATCTATACTATTAAAATAGAAATA
1 TATTCAAGCTATCTAAACTGTTAAAATAGAAATA
10391223 CTTATAGTAT
Statistics
Matches: 561, Mismatches: 100, Indels: 31
0.81 0.14 0.04
Matches are distributed among these distances:
157 61 0.11
158 24 0.04
159 26 0.05
160 32 0.06
161 270 0.48
162 146 0.26
163 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (161 bp):
TATTCAAGCTATCTAAACTGTTAAAATAGAAATATAGCAGCAAATTTATATTTTTGCCCTTTTAT
AGCATGAAAAGTGCTAAAAACACATAACTGTAACTTTTTTCATGCATATCAAGCTTGGAAGCCAA
GCTTAAACATTTGGACAAGTTTAATATCATG
Found at i:10390916 original size:322 final size:318
Alignment explanation
Indices: 10390429--10391222 Score: 970
Period size: 322 Copynumber: 2.5 Consensus size: 318
10390419 ATAGCAATAT
* ** * *
10390429 ATTTACATTTTTGCCCTTTTATAACACAAAAAGTGCTAAAAACACATAAGCTGTAACTTTTTTCA
1 ATTTATATTTTTGCCCTTTTATGGCATAAAAAGTGCT-AAAA-ACATAA-ATGTAACTTTTTTCA
** * *** *
10390494 TGCATATCAAAGTTGAAAGCCAAGCTTAAACATTTGGACAAGTTTAATATCATATATTCAAGCTA
63 TGCATATC-AAGTTGGCAGCCAAGCTCAAACATTCAAACAAGTTTAATATCATGTATTCAAGCTA
10390559 TCTAAACTGTTAAAATAGAAATATAGCAACAAATTTACATTTTTGCTC-TTTTACAGCATGAAAA
127 TCTAAACTGTTAAAATAGAAATATAGCAACAAATTTACATTTTTGC-CATTTTACAGCATGAAAA
* *** * *
10390623 GTGATAAAAACACATGAACTGTAAC-TTTTTCATGCATATCATGCATGGCAA-CCAAGTTCAAAT
191 GTGATAAAAACACATAAACCACAACTTTTTTCATACATATCAAGCATGG-AAGCCAAGTTCAAAT
* * *
10390686 ATTTGGACAAGTTTAATATCTTGTATTTGAGCTATCTAAATTGTTATAATAGAAA-TA-CATTAG
255 ATTTGGACAAGTTTAATATCATGTA-TTGAGCTATCTAAACTGTTAAAATAGAAACTAGC---AG
*
10390749 TAA
316 CAA
* *
10390752 ATTTATATTTTTGCCCTTTTATGGCTTGAAAAGTGCTAAAAATGCATAAATGTAACTTTTTTCAT
1 ATTTATATTTTTGCCCTTTTATGGCATAAAAAGTGCTAAAAA--CATAAATGTAACTTTTTTCAT
* * *
10390817 GCATATCAAGTGTGGCAGCCAAGCTCAAACATTCATACAATTTTAATATCATGTATTCGAGCTAT
64 GCATATCAAGT-TGGCAGCCAAGCTCAAACATTCAAACAAGTTTAATATCATGTATTCAAGCTAT
* * * * *
10390882 CTAAACTGTTAAAATAGAAGTATAGTAGCAAATTTATATTTTTGCCATTTTATAGCATGAAAAGT
128 CTAAACTGTTAAAATAGAAATATAGCAACAAATTTACATTTTTGCCATTTTACAGCATGAAAAGT
* * * *
10390947 GCTAAAAATACATAAACCACAACTTTTTTCATACATATCAAGCGTGGAAGTCAAGTTCAAATATT
193 GATAAAAACACATAAACCACAACTTTTTTCATACATATCAAGCATGGAAGCCAAGTTCAAATATT
* *
10391012 TGGACAAGTTTAATATCATGTATTGAGCTATCTAAGCTGTTAAAATAGAAACTAGCAGCAT
258 TGGACAAGTTTAATATCATGTATTGAGCTATCTAAACTGTTAAAATAGAAACTAGCAGCAA
* * * * *
10391073 ATTTATGTTTTTG-CCTTTTACGGCATAAAAAATGCTAAAAACACAAACCGTAACTTTTTTCATG
1 ATTTATATTTTTGCCCTTTTATGGCATAAAAAGTGCTAAAAACATAAA-TGTAACTTTTTTCATG
* * * *
10391137 CATATTAAGCATGGCAGTCAAGCTCAAACATTCAAATAAGTTTAATATCATGTATTCAAGCTATC
65 CATATCAAG-TTGGCAGCCAAGCTCAAACATTCAAACAAGTTTAATATCATGTATTCAAGCTATC
* *
10391202 TATACTATTAAAATAGAAATA
129 TAAACTGTTAAAATAGAAATA
10391223 CTTATAGTAT
Statistics
Matches: 407, Mismatches: 54, Indels: 24
0.84 0.11 0.05
Matches are distributed among these distances:
318 5 0.01
319 90 0.22
320 24 0.06
321 21 0.05
322 173 0.43
323 93 0.23
324 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (318 bp):
ATTTATATTTTTGCCCTTTTATGGCATAAAAAGTGCTAAAAACATAAATGTAACTTTTTTCATGC
ATATCAAGTTGGCAGCCAAGCTCAAACATTCAAACAAGTTTAATATCATGTATTCAAGCTATCTA
AACTGTTAAAATAGAAATATAGCAACAAATTTACATTTTTGCCATTTTACAGCATGAAAAGTGAT
AAAAACACATAAACCACAACTTTTTTCATACATATCAAGCATGGAAGCCAAGTTCAAATATTTGG
ACAAGTTTAATATCATGTATTGAGCTATCTAAACTGTTAAAATAGAAACTAGCAGCAA
Found at i:10392663 original size:6 final size:5
Alignment explanation
Indices: 10392633--10392783 Score: 70
Period size: 6 Copynumber: 26.0 Consensus size: 5
10392623 TCATCCTATT
* * *
10392633 TTTTG TTTTGA TTTTA TTTTA TTTTA CTTT- TTCTA TTTTA TTTTCA TTTTA
1 TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA
10392684 TTTTTAGA TTTTA TTTTTA CTTATTA TTTTTA TTTTCA TCTTTAA TTATTA
1 -TTTT--A TTTTA -TTTTA -TT-TTA -TTTTA TTTT-A T-TTT-A TT-TTA
10392735 TTTTCTA TTTTA TTTTTAGA TTTTA TTTTTA CTTATTA TTATTA TTTTA
1 -TTT-TA TTTTA -TTTT--A TTTTA -TTTTA -TT-TTA TT-TTA TTTTA
10392784 CTCATTACTT
Statistics
Matches: 119, Mismatches: 9, Indels: 36
0.73 0.05 0.22
Matches are distributed among these distances:
4 2 0.02
5 38 0.32
6 50 0.42
7 27 0.23
8 2 0.02
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.72
Consensus pattern (5 bp):
TTTTA
Found at i:10392688 original size:25 final size:24
Alignment explanation
Indices: 10392643--10392783 Score: 94
Period size: 24 Copynumber: 5.7 Consensus size: 24
10392633 TTTTGTTTTG
*
10392643 ATTTTATTTTATTTTACTTTTTCT
1 ATTTTATTTTATTTTATTTTTTCT
**
10392667 ATTTTATTTTCATTTTA-TTTTTAG
1 ATTTTATTTT-ATTTTATTTTTTCT
*
10392691 ATTTTATTTT-TACTTATTATTTT-T
1 ATTTTATTTTAT-TTTATT-TTTTCT
*
10392715 ATTTTCATCTTTA-ATTATTATTTTCT
1 ATTTT-AT-TTTATTTTATT-TTTTCT
*
10392741 ATTTTATTTTTAGATTTTATTTTTACT
1 ATTTTA-TTTT--ATTTTATTTTTTCT
*
10392768 -TATTATTATTATTTTA
1 ATTTTATT-TTATTTTA
10392784 CTCATTACTT
Statistics
Matches: 96, Mismatches: 8, Indels: 26
0.74 0.06 0.20
Matches are distributed among these distances:
22 1 0.01
23 3 0.03
24 37 0.39
25 28 0.29
26 16 0.17
27 6 0.06
28 5 0.05
ACGTcount: A:0.22, C:0.06, G:0.01, T:0.71
Consensus pattern (24 bp):
ATTTTATTTTATTTTATTTTTTCT
Found at i:10392694 original size:13 final size:11
Alignment explanation
Indices: 10392633--10392783 Score: 115
Period size: 13 Copynumber: 12.5 Consensus size: 11
10392623 TCATCCTATT
* *
10392633 TTTTGTTTTGA
1 TTTTATTTTTA
10392644 TTTTA-TTTTA
1 TTTTATTTTTA
10392654 TTTTACTTTTTCTA
1 TTTTA--TTTT-TA
*
10392668 TTTTATTTTCA
1 TTTTATTTTTA
10392679 TTTTATTTTTAGA
1 TTTTATTTTT--A
10392692 TTTTATTTTTA
1 TTTTATTTTTA
10392703 CTTATTATTTTTA
1 -TT-TTATTTTTA
*
10392716 TTTTCATCTTTAA
1 TTTT-AT-TTTTA
10392729 TTATTATTTTCTA
1 TT-TTATTTT-TA
10392742 TTTTATTTTTAGA
1 TTTTATTTTT--A
10392755 TTTTATTTTTA
1 TTTTATTTTTA
*
10392766 CTTATTATTATTA
1 -TT-TTATTTTTA
10392779 TTTTA
1 TTTTA
10392784 CTCATTACTT
Statistics
Matches: 117, Mismatches: 7, Indels: 32
0.75 0.04 0.21
Matches are distributed among these distances:
10 9 0.08
11 22 0.19
12 24 0.21
13 53 0.45
14 9 0.08
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.72
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:10392779 original size:19 final size:20
Alignment explanation
Indices: 10392694--10392782 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 20
10392684 TTTTTAGATT
*
10392694 TTATTTTTA-CTTATTATTT
1 TTATTTTTATCTTATTATTA
* *
10392713 TTATTTTCATCTT-TAATTA
1 TTATTTTTATCTTATTATTA
* *
10392732 TTATTTTCTATTTTATTTTTAGA
1 TTATTTT-TATCTTATTATT--A
10392755 TTTTATTTTTA-CTTATTATTA
1 --TTATTTTTATCTTATTATTA
10392776 TTATTTT
1 TTATTTT
10392783 ACTCATTACT
Statistics
Matches: 54, Mismatches: 9, Indels: 14
0.70 0.12 0.18
Matches are distributed among these distances:
19 26 0.48
20 7 0.13
21 4 0.07
23 8 0.15
24 2 0.04
25 7 0.13
ACGTcount: A:0.22, C:0.06, G:0.01, T:0.71
Consensus pattern (20 bp):
TTATTTTTATCTTATTATTA
Found at i:10392808 original size:63 final size:63
Alignment explanation
Indices: 10392678--10392811 Score: 164
Period size: 63 Copynumber: 2.1 Consensus size: 63
10392668 TTTTATTTTC
* * * ****
10392678 ATTTTATTTTTAGATTTTATTTTTACTTATTATTTTTATTTTCATCTTTAATTATTATTTTCT
1 ATTTTATTTTTAGATTTTATTTTTACTTATTATTATTATTTTCATCATTAATTATAATTGAAA
*
10392741 ATTTTATTTTTAGATTTTATTTTTACTTATTATTATTATTTT-ACTCATTACTT-TAAATTGAAA
1 ATTTTATTTTTAGATTTTATTTTTACTTATTATTATTATTTTCA-TCATTAATTAT-AATTGAAA
10392804 ATTTTATT
1 ATTTTATT
10392812 ACTTATTTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
62 2 0.03
63 59 0.97
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (63 bp):
ATTTTATTTTTAGATTTTATTTTTACTTATTATTATTATTTTCATCATTAATTATAATTGAAA
Found at i:10396665 original size:18 final size:18
Alignment explanation
Indices: 10396642--10396679 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
10396632 TTAAAAAATG
10396642 AAGAAAAAAAAAGAAAAA
1 AAGAAAAAAAAAGAAAAA
* *
10396660 AAGAAAAAAGAGGAAAAA
1 AAGAAAAAAAAAGAAAAA
10396678 AA
1 AA
10396680 AAAGGAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (18 bp):
AAGAAAAAAAAAGAAAAA
Found at i:10396688 original size:20 final size:22
Alignment explanation
Indices: 10396655--10396697 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
10396645 AAAAAAAAAG
10396655 AAAAAAAGAAAAAAG-AGGAAA
1 AAAAAAAGAAAAAAGAAGGAAA
*
10396676 AAAAAAAG-GAAAAGAAGGAAA
1 AAAAAAAGAAAAAAGAAGGAAA
10396697 A
1 A
10396698 TGAAGGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (22 bp):
AAAAAAAGAAAAAAGAAGGAAA
Found at i:10396705 original size:31 final size:30
Alignment explanation
Indices: 10396635--10396708 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
10396625 ATTTTTCTTA
10396635 AAAAATGAA-G-AAAAAAAAAGAAAAAAAG
1 AAAAATGAAGGAAAAAAAAAAGAAAAAAAG
* *
10396663 AAAAAAG-AGGAAAAAAAAAAGGAAAAGAAG
1 AAAAATGAAGGAAAAAAAAAA-GAAAAAAAG
*
10396693 GAAAATGAAGGAAAAA
1 AAAAATGAAGGAAAAA
10396709 TGGATGAGGC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
27 1 0.03
28 7 0.18
29 9 0.24
30 13 0.34
31 8 0.21
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (30 bp):
AAAAATGAAGGAAAAAAAAAAGAAAAAAAG
Found at i:10397000 original size:25 final size:24
Alignment explanation
Indices: 10396970--10397042 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 24
10396960 AGGTGTGCAA
10396970 AAAAAAAACCAAAAAAAATGAAAAATG
1 AAAAAAAA-CAAAAAAAA-GAAAAA-G
*
10396997 AAAAAAAACAAAACAAAGAAAAAG
1 AAAAAAAACAAAAAAAAGAAAAAG
*
10397021 CAAAAAAA-AAAAAAAA-AAAAAG
1 AAAAAAAACAAAAAAAAGAAAAAG
10397043 GGAGACTCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 6 0.14
23 7 0.16
24 8 0.19
25 6 0.14
26 8 0.19
27 8 0.19
ACGTcount: A:0.84, C:0.07, G:0.07, T:0.03
Consensus pattern (24 bp):
AAAAAAAACAAAAAAAAGAAAAAG
Found at i:10397000 original size:26 final size:25
Alignment explanation
Indices: 10396970--10397041 Score: 87
Period size: 25 Copynumber: 2.9 Consensus size: 25
10396960 AGGTGTGCAA
10396970 AAAAAAAACCAAAAAAAATGAAAAATG-
1 AAAAAAAA-CAAAAAAAA-GAAAAA-GC
*
10396997 AAAAAAAACAAAACAAAGAAAAAGC
1 AAAAAAAACAAAAAAAAGAAAAAGC
10397022 AAAAAAAA-AAAAAAAA-AAAA
1 AAAAAAAACAAAAAAAAGAAAA
10397042 GGGAGACTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.10
24 8 0.19
25 14 0.33
26 8 0.19
27 8 0.19
ACGTcount: A:0.85, C:0.07, G:0.06, T:0.03
Consensus pattern (25 bp):
AAAAAAAACAAAAAAAAGAAAAAGC
Found at i:10398184 original size:87 final size:86
Alignment explanation
Indices: 10398038--10398256 Score: 278
Period size: 87 Copynumber: 2.5 Consensus size: 86
10398028 AATTTTGTTA
* * *
10398038 TGAAACCTTTGCGAATCTAGAACCTTTATGAAA-TTTAGAATCTTGCGAATCTTTCATTCTTGTG
1 TGAAACCTTTGCGAATCTAGAACCTTTATGAAACTTGA-AATCTTGTGAATCTTTCATTCTTATG
*
10398102 ACTCTGAAAAGTCCTTATAAACC
65 AATCTG-AAAGTCCTTATAAACC
* *
10398125 TGAAACCTTTGTGAATGTAGAACCTTTATGAAACTTGAAATCTTGTGAATCTTTCATTCTTATGA
1 TGAAACCTTTGCGAATCTAGAACCTTTATGAAACTTGAAATCTTGTGAATCTTTCATTCTTATGA
* * * *
10398190 ATTTGAAAGTTCTTGTGAACC
66 ATCTGAAAGTCCTTATAAACC
* * * * *
10398211 TAAAACTTTTGCAAATCTAGAACCTTTGTGAAACTTGAAACCTTGT
1 TGAAACCTTTGCGAATCTAGAACCTTTATGAAACTTGAAATCTTGT
10398257 TATTCTAGAA
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
86 52 0.46
87 59 0.52
88 3 0.03
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37
Consensus pattern (86 bp):
TGAAACCTTTGCGAATCTAGAACCTTTATGAAACTTGAAATCTTGTGAATCTTTCATTCTTATGA
ATCTGAAAGTCCTTATAAACC
Found at i:10398378 original size:121 final size:119
Alignment explanation
Indices: 10398142--10398379 Score: 300
Period size: 121 Copynumber: 2.0 Consensus size: 119
10398132 TTTGTGAATG
*** * * * * *
10398142 TAGAACCTTTATGAAACTTGAAATCTTGTGAATCTTTCATTCTTATGAATTTGAAAGTTCTTGTG
1 TAGAACCTTTATGAAACTTGAAATCTTACAAATCTTCCATTCTTACGAATCTGAAAGTCCTTGTA
* *
10398207 AACCTAAAACTTTTGCAAATCTAGAACCTTTGTGAAACTTGAAACCTTGTTATTC
66 AACCTAAAACTTTTG-AAATCTAGAACCTCTATGAAACTTGAAACCTTGTTATTC
10398262 TAGAACCTTT-TGAGAAACTTGAAATCTTACAAATCTTCCATTCTTACGAATCTGAAAGTCCTTG
1 TAGAACCTTTAT--GAAACTTGAAATCTTACAAATCTTCCATTCTTACGAATCTGAAAGTCCTTG
* * *
10398326 TAAACCTGAAACCTTTATG-AATTTAGAACCTCTATGAAACTTGAAATCTTGTTA
64 TAAACCT-AAAACTTT-TGAAATCTAGAACCTCTATGAAACTTGAAACCTTGTTA
10398380 AATTTTCATT
Statistics
Matches: 101, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
119 1 0.01
120 10 0.10
121 81 0.80
122 7 0.07
123 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (119 bp):
TAGAACCTTTATGAAACTTGAAATCTTACAAATCTTCCATTCTTACGAATCTGAAAGTCCTTGTA
AACCTAAAACTTTTGAAATCTAGAACCTCTATGAAACTTGAAACCTTGTTATTC
Found at i:10400078 original size:23 final size:23
Alignment explanation
Indices: 10400052--10400121 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
10400042 TCTTTTATCC
10400052 TATTTTCTGTTTT-GATTTTATTT
1 TATTTTCT-TTTTAGATTTTATTT
* **
10400075 TATTATACTTTTTCTATTTT-TTT
1 TATT-TTCTTTTTAGATTTTATTT
* *
10400098 CATTTTATTTTTAGATTTTATTT
1 TATTTTCTTTTTAGATTTTATTT
10400121 T
1 T
10400122 TACTTATTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
22 11 0.31
23 17 0.47
24 8 0.22
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.73
Consensus pattern (23 bp):
TATTTTCTTTTTAGATTTTATTT
Found at i:10400115 original size:13 final size:13
Alignment explanation
Indices: 10400099--10400123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10400089 TATTTTTTTC
10400099 ATTTTATTTTTAG
1 ATTTTATTTTTAG
10400112 ATTTTATTTTTA
1 ATTTTATTTTTA
10400124 CTTATTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
ATTTTATTTTTAG
Found at i:10404479 original size:14 final size:15
Alignment explanation
Indices: 10404462--10404507 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
10404452 TTTTTCTAGC
10404462 AAATATAATT-TTTA
1 AAATATAATTATTTA
* *
10404476 AAAT-TTATTAATTA
1 AAATATAATTATTTA
*
10404490 AAAAATAATTATTTA
1 AAATATAATTATTTA
10404505 AAA
1 AAA
10404508 AAATGACCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
13 4 0.16
14 10 0.40
15 11 0.44
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AAATATAATTATTTA
Found at i:10405627 original size:28 final size:28
Alignment explanation
Indices: 10405591--10405646 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
10405581 AGTATCAGGT
*
10405591 GCTTTTTTAATAATC-AATCAAAATGTTA
1 GCTTCTTTAATAA-CGAATCAAAATGTTA
10405619 GCTTCTTTAATAACGAATCAAAATGTTA
1 GCTTCTTTAATAACGAATCAAAATGTTA
10405647 AGTCATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (28 bp):
GCTTCTTTAATAACGAATCAAAATGTTA
Found at i:10408554 original size:74 final size:75
Alignment explanation
Indices: 10408461--10408603 Score: 218
Period size: 76 Copynumber: 1.9 Consensus size: 75
10408451 AAATGTAGTT
*
10408461 TTTGTTGAAACATG-AAAAAAA-ATATTTTTTAAAATTCAACAAAGACAACATTTCTAAAATAAA
1 TTTGTTGAAACATGAAAAAAAATATATTTTTTAAAATTCAACAAAGACAACATTTATAAAATAAA
10408524 AAACACAATC
66 AAACACAATC
* * * *
10408534 TTTGTTGAAAACATGAAAAAAAATATATTTTTTGAAATTTAACAAAGACAACATTTATAAGATAG
1 TTTGTTG-AAACATGAAAAAAAATATATTTTTTAAAATTCAACAAAGACAACATTTATAAAATAA
10408599 AAAAC
65 AAAAC
10408604 GTAGCATTGA
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
73 7 0.11
74 7 0.11
75 7 0.11
76 41 0.66
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.30
Consensus pattern (75 bp):
TTTGTTGAAACATGAAAAAAAATATATTTTTTAAAATTCAACAAAGACAACATTTATAAAATAAA
AAACACAATC
Found at i:10408618 original size:76 final size:74
Alignment explanation
Indices: 10408462--10408620 Score: 196
Period size: 76 Copynumber: 2.1 Consensus size: 74
10408452 AATGTAGTTT
*
10408462 TTGTTG-AAACATGAAAAAAAATATTTTTTAAAATTCAACAAAGACAACATTTCTAAAATAAAAA
1 TTGTTGAAAACATGAAAAAAAATATTTTTTAAAATTCAACAAAGACAACATTTATAAAATAAAAA
* *
10408526 ACACAATCT
66 ACACAAGCA
* * * *
10408535 TTGTTGAAAACATGAAAAAAAATATATTTTTTGAAATTTAACAAAGACAACATTTATAAGATAGA
1 TTGTTGAAAACATG-AAAAAAA-ATATTTTTTAAAATTCAACAAAGACAACATTTATAAAATAAA
**
10408600 AAAC-GTAGCA
64 AAACACAAGCA
10408610 TTGATTGAAAA
1 TTG-TTGAAAA
10408621 AAAATGATAA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
73 6 0.08
74 7 0.10
75 12 0.16
76 48 0.66
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (74 bp):
TTGTTGAAAACATGAAAAAAAATATTTTTTAAAATTCAACAAAGACAACATTTATAAAATAAAAA
ACACAAGCA
Found at i:10408790 original size:24 final size:23
Alignment explanation
Indices: 10408741--10408800 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
10408731 TGAAAACATG
* *
10408741 AAAAAATAATTTTTCAGAATTCA
1 AAAAAATAATTTTTCAAAATACA
* *
10408764 AAAAAATGATGTTTTCAAAATA-G
1 AAAAAATAAT-TTTTCAAAATACA
*
10408787 AAAACATAATTTTT
1 AAAAAATAATTTTT
10408801 GTTGAAAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 4 0.13
23 17 0.57
24 9 0.30
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.35
Consensus pattern (23 bp):
AAAAAATAATTTTTCAAAATACA
Found at i:10408790 original size:72 final size:73
Alignment explanation
Indices: 10408659--10408892 Score: 256
Period size: 74 Copynumber: 3.2 Consensus size: 73
10408649 ATTTTTATTA
* *
10408659 AAAACATAAAAAAATATATTTTTTAAAATTCAATAAAGACGATG-TTTCTAAGATAGAAAATATA
1 AAAACATGAAAAAATA-ATTTTTTAGAATTCAATAAAGACGATGTTTTC-AAGATAGAAAATATA
10408723 GTCTTTGTTG
64 GTCTTTGTTG
* * * * * *
10408733 AAAACATGAAAAAATAATTTTTCAGAATTCAA-AAAAATGATGTTTTCAAAATAGAAAACATAAT
1 AAAACATGAAAAAATAATTTTTTAGAATTCAATAAAGACGATGTTTTCAAGATAGAAAATATAGT
*
10408797 TTTTGTTG
66 CTTTGTTG
* * * * * * * *
10408805 AAAATAAGAAAAAAAAATATTTTTAGAATTCAATAAAGACAACGTTTTTAAGATAAAAAATGTAG
1 AAAACATGAAAAAATAAT-TTTTTAGAATTCAATAAAGACGATGTTTTCAAGATAGAAAATATAG
*
10408870 TGTTTGTTG
65 TCTTTGTTG
*
10408879 AAAATATGAAAAAA
1 AAAACATGAAAAAA
10408893 ATAAAACGTA
Statistics
Matches: 132, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
72 44 0.33
73 31 0.23
74 57 0.43
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (73 bp):
AAAACATGAAAAAATAATTTTTTAGAATTCAATAAAGACGATGTTTTCAAGATAGAAAATATAGT
CTTTGTTG
Found at i:10408876 original size:74 final size:74
Alignment explanation
Indices: 10408666--10408893 Score: 262
Period size: 72 Copynumber: 3.1 Consensus size: 74
10408656 TTAAAAACAT
* * *
10408666 AAAAAAATATATTTTTTAAAATTCAATAAAGACGATGTTTCTAAGATAGAAAATATAGTCTTTGT
1 AAAAAAAAATA-TTTTTAGAATTCAATAAAGACGATGTTTTTAAGATAGAAAATATAGTCTTTGT
*
10408731 TGAAAACATG
65 TGAAAATATG
* * * * * * * * *
10408741 AAAAAATAAT-TTTTCAGAATTCAA-AAAAATGATGTTTTCAAAATAGAAAACATAATTTTTGTT
1 AAAAAAAAATATTTTTAGAATTCAATAAAGACGATGTTTTTAAGATAGAAAATATAGTCTTTGTT
*
10408804 GAAAATAAG
66 GAAAATATG
* * * * *
10408813 AAAAAAAAATATTTTTAGAATTCAATAAAGACAACGTTTTTAAGATAAAAAATGTAGTGTTTGTT
1 AAAAAAAAATATTTTTAGAATTCAATAAAGACGATGTTTTTAAGATAGAAAATATAGTCTTTGTT
10408878 GAAAATATG
66 GAAAATATG
10408887 AAAAAAA
1 AAAAAAA
10408894 TAAAACGTAA
Statistics
Matches: 123, Mismatches: 28, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
72 47 0.38
73 25 0.20
74 43 0.35
75 8 0.07
ACGTcount: A:0.50, C:0.05, G:0.11, T:0.33
Consensus pattern (74 bp):
AAAAAAAAATATTTTTAGAATTCAATAAAGACGATGTTTTTAAGATAGAAAATATAGTCTTTGTT
GAAAATATG
Found at i:10409838 original size:26 final size:26
Alignment explanation
Indices: 10409807--10409861 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
10409797 AAATTGAAGA
*
10409807 AAGCTTCTCCAAAAGCTTGAAGCAAG
1 AAGCTTCTCCAAAAGCCTGAAGCAAG
*
10409833 AAGCTTTTCCAAAAGCCTGAAGCAAG
1 AAGCTTCTCCAAAAGCCTGAAGCAAG
10409859 AAG
1 AAG
10409862 TTTCATGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (26 bp):
AAGCTTCTCCAAAAGCCTGAAGCAAG
Found at i:10410073 original size:19 final size:18
Alignment explanation
Indices: 10410024--10410073 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
10410014 GTTTTTCTTC
10410024 TTTTCTTCTTTTATTTAA
1 TTTTCTTCTTTTATTTAA
* * *
10410042 TTTTGTTCATTTTTTTTAGT
1 TTTTCTTC-TTTTATTTA-A
10410062 TTTTCTTCTTTT
1 TTTTCTTCTTTT
10410074 CTTCTTTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 7 0.27
19 12 0.46
20 7 0.27
ACGTcount: A:0.10, C:0.10, G:0.04, T:0.76
Consensus pattern (18 bp):
TTTTCTTCTTTTATTTAA
Found at i:10410097 original size:45 final size:47
Alignment explanation
Indices: 10410011--10410104 Score: 174
Period size: 46 Copynumber: 2.0 Consensus size: 47
10410001 CCCACCCAAG
10410011 TTAGTTTTTCTTCTTTTCTTCTTTTATTTAATTTTGTTCATT-TTTT
1 TTAGTTTTTCTTCTTTTCTTCTTTTATTTAATTTTGTTCATTCTTTT
10410057 TTAGTTTTTCTTCTTTTCTTC-TTTATTTAATTTTGTTCATTCTTTT
1 TTAGTTTTTCTTCTTTTCTTCTTTTATTTAATTTTGTTCATTCTTTT
10410103 TT
1 TT
10410105 CTAGATGGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
45 20 0.43
46 27 0.57
ACGTcount: A:0.11, C:0.12, G:0.04, T:0.73
Consensus pattern (47 bp):
TTAGTTTTTCTTCTTTTCTTCTTTTATTTAATTTTGTTCATTCTTTT
Found at i:10412764 original size:161 final size:161
Alignment explanation
Indices: 10412529--10413122 Score: 591
Period size: 160 Copynumber: 3.7 Consensus size: 161
10412519 ACCAAAATAG
* * * * * * *
10412529 TTTCACACATATCAAACGTGGCAACCAAGGTCAACCATTTGAACAAGTTTAGA-ATTATATATTG
1 TTTCACACATATC-AACGTGGTAGCCAAGTTCAACCATTCGGACAAGTTTA-ATATCATATATTA
*
10412593 GAGCTATCTAAACTATTAAAATAAAAATATAGCAGCAAATTTAAATTTTTTTACCCTTTGACGGC
64 GAGCTATCTAAACTATTAAAATAAAAATATAGCAGCAAATTTACATTTTTTTACCCTTT-ACGGC
* *
10412658 ACAAAAAGTCCTAAAAACTCATAAGTCATAATAT
128 ACAAAAAGTCCTAAAAACTCATAAATCATAACAT
* *
10412692 TTTCACACATATCAA-GTGGTAGCCAAGTTCAACCATTTGGACAAGTTTAATATCATGTATTAGA
1 TTTCACACATATCAACGTGGTAGCCAAGTTCAACCATTCGGACAAGTTTAATATCATATATTAGA
* * * *
10412756 GTTATCTAAAATATTCAAACAAAAATATAGCAGCAAATTTACA-TTTTTTA-CCTTTAAC-G-AC
66 GCTATCTAAACTATTAAAATAAAAATATAGCAGCAAATTTACATTTTTTTACCCTTT-ACGGCAC
* * *
10412817 ATAAAAGTCCTAAAAACACATAAACCGTAACAT
130 A-AAAAGTCCTAAAAACTCATAAATCATAACAT
* * * *
10412850 TTTCACACATATCAAGCGTGATAGCCAAGTTCAACTATTCAGACAATTTTAATATCATATATTTA
1 TTTCACACATATCAA-CGTGGTAGCCAAGTTCAACCATTCGGACAAGTTTAATATCATATA-TTA
* * * * * * * * * * *
10412915 -ACCTATATCAACTGTGAAAATATAAATGTAGCAACAAATTT--ATATTTTTGCCCTTTATGGCA
64 GAGCTATCTAAACTATTAAAATAAAAATATAGCAGCAAATTTACATTTTTTTACCCTTTACGGCA
* * *
10412977 CAAAAAGTCTTTAAAA-TAGATAAATCATAACAT
129 CAAAAAGTCCTAAAAACT-CATAAATCATAACAT
* ** **
10413010 TTTCACACATATCAAGTGTGGTAGCCAA-TTCAACCATTCGGACAAGTTTAATATCATGCATTTC
1 TTTCACACATATCAA-CGTGGTAGCCAAGTTCAACCATTCGGACAAGTTTAATATCATATATTAG
** * * *
10413074 AATTATCTAAGCTATTAAAACT-AAAAGATAGTAGCAAATTTACATTTTT
65 AGCTATCTAAACTATTAAAA-TAAAAATATAGCAGCAAATTTACATTTTT
10413123 ACACTTTTAC
Statistics
Matches: 351, Mismatches: 66, Indels: 30
0.79 0.15 0.07
Matches are distributed among these distances:
157 3 0.01
158 45 0.13
159 67 0.19
160 132 0.38
161 89 0.25
162 2 0.01
163 13 0.04
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (161 bp):
TTTCACACATATCAACGTGGTAGCCAAGTTCAACCATTCGGACAAGTTTAATATCATATATTAGA
GCTATCTAAACTATTAAAATAAAAATATAGCAGCAAATTTACATTTTTTTACCCTTTACGGCACA
AAAAGTCCTAAAAACTCATAAATCATAACAT
Found at i:10413656 original size:17 final size:17
Alignment explanation
Indices: 10413634--10413667 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10413624 CGATCTACCA
10413634 ACTTTAAAATAATTAAT
1 ACTTTAAAATAATTAAT
**
10413651 ACTTTAATTTAATTAAT
1 ACTTTAAAATAATTAAT
10413668 TATACTAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (17 bp):
ACTTTAAAATAATTAAT
Found at i:10414315 original size:131 final size:129
Alignment explanation
Indices: 10414092--10414688 Score: 462
Period size: 131 Copynumber: 4.6 Consensus size: 129
10414082 ATTTTTTGCG
* ** * * *
10414092 AAAACTTATTTTATTTGCAACAATTTTTCAA---CATCG-TTAAGTTA-TTTTTAATATTTAATA
1 AAAACTTGTTTTATTTGCAACAATTTTTCAATGTTGTTGCTTAATTTATTTTTTAATATTTTATA
* * * *
10414152 CAA-AGACAAAAAAAGTTATTACATAAAATTTTATCATATTTGTAACGATAAAATATTATTGTTA
66 CAACA-ATAAAAAAA-TTGTTACATAAATTTTTATCATATTTGTAA-GATAAAAAATTATTGTT-
10414216 AG-
127 AGC
* * * *
10414218 AAAACTCT-TTTTGTTTGCAACAATATTTCAATGTTGTTGTTTAAATTATTTTTTAATATTTTAT
1 AAAACT-TGTTTTATTTGCAACAATTTTTCAATGTTGTTGCTTAATTTATTTTTTAATATTTTAT
*
10414282 ACAACAATAAAAAAAGTTGTTACGA-AAATTTTTATCATATTTGTAATAGTAAAAAATTATTG-T
65 ACAACAATAAAAAAA-TTGTTAC-ATAAATTTTTATCATATTTGTAAGA-TAAAAAATTATTGTT
10414345 AGC
127 AGC
** ** * *
10414348 AAAACTCATTTTATTTGCAATGATTTTTCAGTGTCT-TTGTTTAATTTACTTTTTTTTATATATA
1 AAAACTTGTTTTATTTGCAACAATTTTTCAATGT-TGTTGCTTAATTTA---TTTTTTA-ATAT-
* * *
10414412 TATTTTA-TACAATGACAATAAAATTGTTACATAAATTTTTATCATA-TTGTAGGGATAAAAAAA
60 T-TTATACAACAAT-A-AA-AAAATTGTTACATAAATTTTTATCATATTTGTA-AGAT-AAAAAA
*
10414475 TTATTGTT-GT
119 TTATTGTTAGC
* ** * * **
10414485 AAATACTTGATTTATTTGCAATTAGTTTTCGATGTCATTGCTTAATTTATTTTTTTAATATTTTA
1 AAA-ACTTGTTTTATTTGCAACAATTTTTCAATGTTGTTGCTTAATTTA-TTTTTTAATATTTTA
* * * *
10414550 TACAACAA-CAAAAAATTGTTATGA-AAATTTTTATTATATTTCTAATGAT-AAAAATTATTGTT
64 TACAACAATAAAAAAATTGTTA-CATAAATTTTTATCATATTTGTAA-GATAAAAAATTATTGTT
10414612 -GC
127 AGC
* * *
10414614 AAAAACTTGTTTTA-TTGCAACGATTTTTCAATATTGTTGCTT-ACTT-TTTTTTAATATTTTAT
1 -AAAACTTGTTTTATTTGCAACAATTTTTCAATGTTGTTGCTTAATTTATTTTTTAATATTTTAT
*
10414676 ACAACGATAAAAA
65 ACAACAATAAAAA
10414689 TTTGCAACCA
Statistics
Matches: 386, Mismatches: 52, Indels: 66
0.77 0.10 0.13
Matches are distributed among these distances:
125 22 0.06
126 31 0.08
127 4 0.01
128 21 0.05
129 27 0.07
130 73 0.19
131 76 0.20
132 2 0.01
133 11 0.03
134 9 0.02
135 10 0.03
136 20 0.05
137 40 0.10
138 40 0.10
ACGTcount: A:0.37, C:0.08, G:0.09, T:0.46
Consensus pattern (129 bp):
AAAACTTGTTTTATTTGCAACAATTTTTCAATGTTGTTGCTTAATTTATTTTTTAATATTTTATA
CAACAATAAAAAAATTGTTACATAAATTTTTATCATATTTGTAAGATAAAAAATTATTGTTAGC
Found at i:10415093 original size:23 final size:23
Alignment explanation
Indices: 10415042--10415093 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
10415032 TTTAATCATA
10415042 TTTATAATGAAAAAAATAATTAT
1 TTTATAATGAAAAAAATAATTAT
*
10415065 TATATAATGAAAGAAAA-AATTAT
1 TTTATAATGAAA-AAAATAATTAT
10415088 TTTATA
1 TTTATA
10415094 TAATATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (23 bp):
TTTATAATGAAAAAAATAATTAT
Found at i:10415107 original size:17 final size:17
Alignment explanation
Indices: 10415085--10415118 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10415075 AAGAAAAAAT
*
10415085 TATTTTATATAATATAA
1 TATTTTATATAACATAA
10415102 TATTTTATATAACATAA
1 TATTTTATATAACATAA
10415119 ATTAATGTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTTTATATAACATAA
Found at i:10415303 original size:15 final size:17
Alignment explanation
Indices: 10415269--10415309 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
10415259 TTTATGCTAC
10415269 ATTTATTTATAATGATAT
1 ATTTATTTATAA-GATAT
10415287 ATTTATTTAT-A-ATAT
1 ATTTATTTATAAGATAT
10415302 ATTTATTT
1 ATTTATTT
10415310 TTTAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 12 0.52
17 1 0.04
18 10 0.43
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
ATTTATTTATAAGATAT
Found at i:10415313 original size:18 final size:18
Alignment explanation
Indices: 10415269--10415303 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
10415259 TTTATGCTAC
10415269 ATTTATTTATAATGATAT
1 ATTTATTTATAATGATAT
10415287 ATTTATTTATAAT-ATAT
1 ATTTATTTATAATGATAT
10415304 TTATTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTTATTTATAATGATAT
Found at i:10415794 original size:21 final size:23
Alignment explanation
Indices: 10415750--10415794 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
10415740 TCATAAATTT
*
10415750 AAAAACTTATATTATCATTTTAA
1 AAAAACTTATATTATCATTATAA
10415773 AAAAACTTATATTAT-A-TATAA
1 AAAAACTTATATTATCATTATAA
10415794 A
1 A
10415795 TTTATTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 1 0.05
23 15 0.71
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (23 bp):
AAAAACTTATATTATCATTATAA
Found at i:10415807 original size:16 final size:15
Alignment explanation
Indices: 10415780--10415816 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
10415770 TAAAAAAACT
10415780 TATATTATATATAAA
1 TATATTATATATAAA
*
10415795 TTTATTGATATATAAA
1 TATATT-ATATATAAA
10415811 TATATT
1 TATATT
10415817 CCTGTACCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (15 bp):
TATATTATATATAAA
Found at i:10417579 original size:102 final size:104
Alignment explanation
Indices: 10417397--10417583 Score: 272
Period size: 103 Copynumber: 1.8 Consensus size: 104
10417387 TAAGGCAACC
10417397 AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATGAGGTTGCTAAAAGAAAGTTAAA
1 AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATGAGGTTGCTAAAAGAAAGTTAAA
* *
10417462 ATAACGACATTTAATCATTATGAAATATGATGTGAAAGT
66 ACAACGACATGTAATCATTATGAAATATGATGTGAAAGT
* * * * *
10417501 AAAATAATATTGTTACGT-AAGAGTTTTTGTAACCAAAATTTGTA-GTTGTTGAGA-AAAGTTAA
1 AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATG-AGGTTGCTAAAAGAAAGTTAA
*
10417563 AACAACGACGTGTAATCATTA
65 AACAACGACATGTAATCATTA
10417584 CAAAATATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
102 26 0.35
103 29 0.39
104 19 0.26
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (104 bp):
AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATGAGGTTGCTAAAAGAAAGTTAAA
ACAACGACATGTAATCATTATGAAATATGATGTGAAAGT
Found at i:10417590 original size:102 final size:104
Alignment explanation
Indices: 10417397--10417591 Score: 270
Period size: 102 Copynumber: 1.9 Consensus size: 104
10417387 TAAGGCAACC
10417397 AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATGAGGTTGCTAAAAGAAAGTTAAA
1 AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATGAGGTTGCTAAAAGAAAGTTAAA
* * **
10417462 ATAACGACATTTAATCATTATGAAATATGATGTGAAAGT
66 ACAACGACATGTAATCATTACAAAATATGATGTGAAAGT
* * * * *
10417501 AAAATAATATTGTTACGT-AAGAGTTTTTGTAACCAAAATTTGTA-GTTGTTGAGA-AAAGTTAA
1 AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATG-AGGTTGCTAAAAGAAAGTTAA
*
10417563 AACAACGACGTGTAATCATTACAAAATAT
65 AACAACGACATGTAATCATTACAAAATAT
10417592 TTTATGTAAC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
102 32 0.40
103 29 0.36
104 19 0.24
ACGTcount: A:0.45, C:0.08, G:0.15, T:0.32
Consensus pattern (104 bp):
AAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATATGAGGTTGCTAAAAGAAAGTTAAA
ACAACGACATGTAATCATTACAAAATATGATGTGAAAGT
Found at i:10417607 original size:102 final size:104
Alignment explanation
Indices: 10417373--10417611 Score: 268
Period size: 102 Copynumber: 2.3 Consensus size: 104
10417363 ATAAGATTAT
* * *
10417373 ATTACAAAATATTATAAGGCAACCAAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATA
1 ATTACAAAATATT-TTATGAAACCAAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATA
* *
10417438 TGAGGTTGCTAAAAGAAAGTTAAAATAACGACATTTAATC
65 TGAGGTTGCTAAAAGAAAGTTAAAACAACGACATGTAATC
** ** * ** * *
10417478 ATTATGAAATATGATGTGAAAGTAAAATAATATTGTTACGT-AAGAGTTTTTGTAACCAAAATTT
1 ATTACAAAATATTTTATGAAACCAAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATAT
* * * *
10417542 GTA-GTTGTTGAGA-AAAGTTAAAACAACGACGTGTAATC
66 G-AGGTTGCTAAAAGAAAGTTAAAACAACGACATGTAATC
*
10417580 ATTACAAAATATTTTATGTAACCAAAATAATA
1 ATTACAAAATATTTTATGAAACCAAAATAATA
10417612 ATCCTAAAAT
Statistics
Matches: 107, Mismatches: 26, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
102 46 0.43
103 29 0.27
104 22 0.21
105 10 0.09
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.32
Consensus pattern (104 bp):
ATTACAAAATATTTTATGAAACCAAAATAATATTGTTACGTAAAAAGTTTTTGTAACCAAAATAT
GAGGTTGCTAAAAGAAAGTTAAAACAACGACATGTAATC
Found at i:10425172 original size:8 final size:8
Alignment explanation
Indices: 10425159--10425201 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
10425149 GCCCACTTCA
*
10425159 TTTTGTAT
1 TTTTATAT
*
10425167 TTTTGTAT
1 TTTTATAT
10425175 TTCTTATAT
1 TT-TTATAT
10425184 TTTTATAT
1 TTTTATAT
10425192 TTTT-TAT
1 TTTTATAT
10425199 TTT
1 TTT
10425202 ATTTTACTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
7 6 0.18
8 20 0.61
9 7 0.21
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (8 bp):
TTTTATAT
Found at i:10425199 original size:7 final size:7
Alignment explanation
Indices: 10425158--10425252 Score: 57
Period size: 7 Copynumber: 12.4 Consensus size: 7
10425148 GGCCCACTTC
*
10425158 ATTTTGT
1 ATTTTTT
10425165 ATTTTTGT
1 ATTTTT-T
10425173 ATTTCTTAT
1 ATTT-TT-T
10425182 ATTTTTAT
1 ATTTTT-T
10425190 ATTTTTT
1 ATTTTTT
10425197 ATTTTATT
1 ATTTT-TT
*
10425205 -TTACTTT
1 ATT-TTTT
*
10425212 ATTTTGT
1 ATTTTTT
10425219 ATTTTATGT
1 ATTTT-T-T
*
10425228 ATTTATT
1 ATTTTTT
10425235 ATTTATTT
1 ATTT-TTT
*
10425243 ATTTATT
1 ATTTTTT
10425250 ATT
1 ATT
10425253 ACTATTTATT
Statistics
Matches: 71, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
7 32 0.45
8 27 0.38
9 12 0.17
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (7 bp):
ATTTTTT
Found at i:10425201 original size:15 final size:16
Alignment explanation
Indices: 10425164--10425296 Score: 78
Period size: 17 Copynumber: 7.8 Consensus size: 16
10425154 CTTCATTTTG
* *
10425164 TATTTTTGTATTTCTT
1 TATTTTTATATTTATT
10425180 ATATTTTTATATTT-TT
1 -TATTTTTATATTTATT
10425196 TA-TTTTAT-TTTACTT
1 TATTTTTATATTTA-TT
*
10425211 TATTTTGTAT-TTTATG
1 TATTTT-TATATTTATT
10425227 TATTTATTATTTATTTATT
1 TATTT-TTA--TATTTATT
*
10425246 TATTATTACTATTTATT
1 TATTTTTA-TATTTATT
10425263 AATATATATTTAT-TTTATTT
1 --TAT-T-TTTATATTTA-TT
10425283 TATTTTTATTATTT
1 TATTTTTA-TATTT
10425297 TATTATCTAT
Statistics
Matches: 95, Mismatches: 6, Indels: 29
0.73 0.05 0.22
Matches are distributed among these distances:
13 3 0.03
14 6 0.06
15 6 0.06
16 17 0.18
17 30 0.32
18 10 0.11
19 16 0.17
20 4 0.04
21 3 0.03
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (16 bp):
TATTTTTATATTTATT
Found at i:10425231 original size:46 final size:46
Alignment explanation
Indices: 10425167--10425255 Score: 112
Period size: 46 Copynumber: 1.9 Consensus size: 46
10425157 CATTTTGTAT
*
10425167 TTTTGTATTTCTTATATTT-TTATATTTTTTATTTTATT-TTACTTTA
1 TTTTGTATTTCTTATATTTATTAT-TTATTTA-TTTATTATTACTTTA
*
10425213 TTTTGTATTT-TATGTATTTATTATTTATTTATTTATTATTACT
1 TTTTGTATTTCT-TATATTTATTATTTATTTATTTATTATTACT
10425256 ATTTATTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
45 7 0.18
46 27 0.71
47 4 0.11
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.72
Consensus pattern (46 bp):
TTTTGTATTTCTTATATTTATTATTTATTTATTTATTATTACTTTA
Found at i:10425240 original size:4 final size:4
Alignment explanation
Indices: 10425189--10425447 Score: 71
Period size: 4 Copynumber: 64.2 Consensus size: 4
10425179 TATATTTTTA
* *
10425189 TATT T-TT TATTT TATTT TACTT TATT T-TG TATTT TATG TATT TA-T
1 TATT TATT TA-TT TA-TT TA-TT TATT TATT TA-TT TATT TATT TATT
*
10425234 TATT TATT TATT TA-T TATT ACTATT TATT AATATA TATT TATTT TATTT
1 TATT TATT TATT TATT TATT --TATT TATT --TATT TATT TA-TT TA-TT
* * * * * * * *
10425283 TATT TTTAT TATT T-TAT TATC TATC TGTT GATA TATA TATG TA-T TA-T
1 TATT TAT-T TATT TAT-T TATT TATT TATT TATT TATT TATT TATT TATT
* * * *
10425330 TATT TATC TATT TATA TA-T TA-T TATT TATC TATT TATA TATAT TA-T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT-T TATT
* * * * *
10425376 TA-T TA-T TATT TATC TATT AATT AATA TATT ATCTT TA-T TA-T TATCT
1 TATT TATT TATT TATT TATT TATT TATT TATT -TATT TATT TATT TAT-T
*
10425422 TTTT TATT T-TAT TATT TATTT TATT T
1 TATT TATT TAT-T TATT TA-TT TATT T
10425448 TTTCTTTTCT
Statistics
Matches: 195, Mismatches: 36, Indels: 48
0.70 0.13 0.17
Matches are distributed among these distances:
3 38 0.19
4 108 0.55
5 42 0.22
6 7 0.04
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (4 bp):
TATT
Found at i:10425259 original size:66 final size:66
Alignment explanation
Indices: 10425172--10425442 Score: 188
Period size: 66 Copynumber: 4.1 Consensus size: 66
10425162 TGTATTTTTG
* * * * * *
10425172 TATTTCTTATATTTTTATATTTTTTATTTTAT-TTTACTTTATTTTGTATTTTATGTA-TTTATT
1 TATTTATTATATTATTATATTTATTAATATATATTTACTTTATTTTAT-TTTTAT-TATTTTATT
10425235 ATT
64 ATT
*
10425238 TATTTATT-TATTATTACTATTTATTAATATATATTTATTTTATTTTATTTTTATTATTTTATTA
1 TATTTATTATATTATTA-TATTTATTAATATATATTTACTTTATTTTATTTTTATTATTTTATTA
*
10425302 TC
65 TT
* * * * * *
10425304 TATCTGTTGATA-TA-TATATGTATTATTATTTATCTA-TTTATATATTATTATTTATCTA-TTT
1 TATTTATT-ATATTATTATATTTATTAATATATATTTACTTTAT-T-TTATT-TTTAT-TATTTT
*
10425365 A-TATA
61 ATTATT
*
10425370 TA-TTATTATTATTATT-TATCTATTAAT-TAATATATTATCTTTATTATTATCTTTT-TTATTT
1 TATTTATTA-TATTATTATATTTATTAATAT-ATAT-TTA-CTTTATT-TTAT-TTTTATTATTT
10425431 TATTATT
60 TATTATT
10425438 TATTT
1 TATTT
10425443 TATTTTTTCT
Statistics
Matches: 163, Mismatches: 22, Indels: 37
0.73 0.10 0.17
Matches are distributed among these distances:
64 6 0.04
65 32 0.20
66 67 0.41
67 32 0.20
68 18 0.11
69 8 0.05
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.67
Consensus pattern (66 bp):
TATTTATTATATTATTATATTTATTAATATATATTTACTTTATTTTATTTTTATTATTTTATTAT
T
Found at i:10425360 original size:52 final size:50
Alignment explanation
Indices: 10425223--10425413 Score: 163
Period size: 52 Copynumber: 3.9 Consensus size: 50
10425213 TTTTGTATTT
* *
10425223 TATGTATTTATTATTTATTTATTTAT-TATTACTATTTA---TTA-ATATA
1 TATGTA-TTATTATTTATCTATTTATATATTATTATTTATCTTTATATATA
* * *
10425269 TATTTATT-TTATTTTAT-T-TTTATTATTTTATTATCTATCTGTTGATATATA
1 TATGTATTATTA-TTTATCTATTTA-TATATTATTATTTATCT-TT-ATATATA
10425320 TATGTATTATTATTTATCTATTTATATATTATTATTTATCTATTTATATATA
1 TATGTATTATTATTTATCTATTTATATATTATTATTTATC--TTTATATATA
* *
10425372 TTAT-TATTATTATTTATCTATTAAT-TAATA-TA-TTATCTTTAT
1 -TATGTATTATTATTTATCTATTTATATATTATTATTTATCTTTAT
10425414 TATTATCTTT
Statistics
Matches: 121, Mismatches: 9, Indels: 29
0.76 0.06 0.18
Matches are distributed among these distances:
43 4 0.03
44 5 0.04
45 16 0.13
46 5 0.04
47 5 0.04
49 7 0.06
50 3 0.02
51 21 0.17
52 45 0.37
53 9 0.07
54 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (50 bp):
TATGTATTATTATTTATCTATTTATATATTATTATTTATCTTTATATATA
Found at i:10425440 original size:52 final size:52
Alignment explanation
Indices: 10425218--10425393 Score: 172
Period size: 52 Copynumber: 3.4 Consensus size: 52
10425208 CTTTATTTTG
*
10425218 TATT-TTATGTATTTAT-TATTTATTTATTTATTA-TTA-CTATTTAT-TAATAT
1 TATTATTAT-TATTTATCTATTTATATA-TTATTATTTATCTATTTATAT-ATAT
* * * *
10425268 ATATTTATT-TTATTTTAT-T-TTTATTATTTTATTATCTATCTGTTGATATATA-
1 -TA-TTATTATTA-TTTATCTATTTA-TATATTATTATTTATCTATTTATATATAT
10425320 TATGTATTATTATTTATCTATTTATATATTATTATTTATCTATTTATATATAT
1 TAT-TATTATTATTTATCTATTTATATATTATTATTTATCTATTTATATATAT
10425373 TATTATTATTATTTATCTATT
1 TATTATTATTATTTATCTATT
10425394 AATTAATATA
Statistics
Matches: 104, Mismatches: 9, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
50 1 0.01
51 25 0.24
52 59 0.57
53 18 0.17
54 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (52 bp):
TATTATTATTATTTATCTATTTATATATTATTATTTATCTATTTATATATAT
Found at i:10425455 original size:12 final size:12
Alignment explanation
Indices: 10425421--10425455 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
10425411 TATTATTATC
10425421 TTTTTTATTTTA
1 TTTTTTATTTTA
*
10425433 TTATTTATTTTA
1 TTTTTTATTTTA
*
10425445 TTTTTTCTTTT
1 TTTTTTATTTT
10425456 CTTCTTTCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:10426330 original size:3 final size:3
Alignment explanation
Indices: 10426324--10426376 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
10426314 TTTTTTTTTC
* * *
10426324 ATT ATT ATT TTT TTT ATT ATT ATT A-G ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10426371 ATT ATT
1 ATT ATT
10426377 TATTTTTCAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 1 0.02
3 44 0.98
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:10426363 original size:23 final size:23
Alignment explanation
Indices: 10426327--10426371 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
10426317 TTTTTTCATT
* *
10426327 ATTATTTTTTTTATTATTATTAG
1 ATTATTATTATTATTATTATTAG
10426350 ATTATTATTATTATTATTATTA
1 ATTATTATTATTATTATTATTA
10426372 TTATTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (23 bp):
ATTATTATTATTATTATTATTAG
Found at i:10426366 original size:26 final size:26
Alignment explanation
Indices: 10426324--10426374 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
10426314 TTTTTTTTTC
* *
10426324 ATTATTATTTTTTTTATTATTATTAG
1 ATTATTATTATTATTATTATTATTAG
10426350 ATTATTATTATTATTATTATTATTA
1 ATTATTATTATTATTATTATTATTA
10426375 TTTATTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (26 bp):
ATTATTATTATTATTATTATTATTAG
Done.