Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 63 of 105
Found at i:11259852 original size:47 final size:47
Alignment explanation
Indices: 11259791--11259886 Score: 140
Period size: 47 Copynumber: 2.0 Consensus size: 47
11259781 TTTTTATTTC
* * *
11259791 TTGACTCATGATTTAAACTCGA-ATGTATTCATTTTCTGATTTATGGT
1 TTGACTCATGATTTAAACT-GAGATATACTCATTTTCTAATTTATGGT
*
11259838 TTGACTCATGATTTAAACTTAGATATACTCATTTTCTAATTTATGGT
1 TTGACTCATGATTTAAACTGAGATATACTCATTTTCTAATTTATGGT
11259885 TT
1 TT
11259887 AATCTTGATC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 1 0.02
47 43 0.98
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.48
Consensus pattern (47 bp):
TTGACTCATGATTTAAACTGAGATATACTCATTTTCTAATTTATGGT
Found at i:11260485 original size:21 final size:21
Alignment explanation
Indices: 11260460--11260499 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
11260450 ATCTCGCTCG
11260460 TTTTTCATTTTTTGACTTACT
1 TTTTTCATTTTTTGACTTACT
11260481 TTTTTCATTTTTTGACTTA
1 TTTTTCATTTTTTGACTTA
11260500 TGGTTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTTTCATTTTTTGACTTACT
Found at i:11261272 original size:68 final size:67
Alignment explanation
Indices: 11261143--11261330 Score: 189
Period size: 68 Copynumber: 2.7 Consensus size: 67
11261133 TCATTTTCTA
* * *** *
11261143 ACTCATGGTTTAATTCAGGTCATTTTCATTTTTTGACTCGTGGTTTAACTTGGATTGTTTTTA-T
1 ACTCATGGTTTAATTCCGGTCATTTTCA-TTTTTGACTCATGGTTTAA-TCCCATTATTTTTATT
11261207 TTGG
64 TTGG
* * *
11261211 ACTTATGGTTTAATCCCGGTCATTTTCATTTTCTGAGTCATGGTTTAATCCCATTCATTTTTATT
1 ACTCATGGTTTAATTCCGGTCATTTTCATTTT-TGACTCATGGTTTAATCCCATT-ATTTTTA-T
*
11261276 TTTTG
63 TTTGG
* * * *
11261281 ACTCATGATTTAATTTCGATCATTTTCAATTTTTGACTAATGGTTTAATC
1 ACTCATGGTTTAATTCCGGTCATTTTC-ATTTTTGACTCATGGTTTAATC
11261331 TCGGTCGTTT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
67 8 0.08
68 44 0.45
70 41 0.42
71 5 0.05
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.51
Consensus pattern (67 bp):
ACTCATGGTTTAATTCCGGTCATTTTCATTTTTGACTCATGGTTTAATCCCATTATTTTTATTTT
GG
Found at i:11261434 original size:20 final size:20
Alignment explanation
Indices: 11261409--11261470 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
11261399 TCTTTGTCAT
11261409 TTTTATTTTTTGACTTGTGA
1 TTTTATTTTTTGACTTGTGA
*
11261429 TTTTA--TTCTG--TTGT--
1 TTTTATTTTTTGACTTGTGA
*
11261443 TTTCATTTTTTGACTTGTGA
1 TTTTATTTTTTGACTTGTGA
*
11261463 TTTAATTT
1 TTTTATTT
11261471 CGATCATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
14 4 0.12
16 8 0.25
18 8 0.25
20 12 0.38
ACGTcount: A:0.15, C:0.06, G:0.13, T:0.66
Consensus pattern (20 bp):
TTTTATTTTTTGACTTGTGA
Found at i:11264625 original size:91 final size:92
Alignment explanation
Indices: 11264460--11264632 Score: 208
Period size: 91 Copynumber: 1.9 Consensus size: 92
11264450 ATGTCAGTTG
* * **
11264460 TTTTCATTTTTTAACTCATGGTTTAATCTCAATCATTTTATTTTCTGACTTGTAGTTTAAGCCTA
1 TTTTCATTTTCTAACTCATGATTTAATCTCAATCATTTTATTTTCTGACTCCTAGTTTAAGCCTA
*
11264525 GTCGTTTTTC-TTTTTTAGACAGGTCA
66 GTCGCTTTTCATTTTTTAGACAGGTCA
* * * * * *
11264551 TTTTCATTTTCTGACTCATGATTTAATCTGAGTCATTTTCATTTTTTGACTCCTAGTTTTA-TCT
1 TTTTCATTTTCTAACTCATGATTTAATCTCAATCATTTT-ATTTTCTGACTCCTAGTTTAAGCCT
11264615 AGATC-CTTTTCATTTTTT
65 AG-TCGCTTTTCATTTTTT
11264633 GACTTATGAT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
91 43 0.63
92 25 0.37
ACGTcount: A:0.20, C:0.16, G:0.10, T:0.54
Consensus pattern (92 bp):
TTTTCATTTTCTAACTCATGATTTAATCTCAATCATTTTATTTTCTGACTCCTAGTTTAAGCCTA
GTCGCTTTTCATTTTTTAGACAGGTCA
Found at i:11264666 original size:126 final size:125
Alignment explanation
Indices: 11264423--11264666 Score: 271
Period size: 126 Copynumber: 1.9 Consensus size: 125
11264413 TTAATTTTGA
* * * ** *
11264423 TCATTTTCATTTTTTGACTCGTGTTTAATGTCAGTTGTTTTCATTTTTTAACTCATGGTTTAATC
1 TCATTTTCATTTTCTGACTCATGTTTAATCTCAGTCATTTTCATTTTTTAACTCATAGTTTAATC
* * *
11264488 TCAATCATTTTATTTTCTGACTTGTAGTTTAAGCCTAGTCGTTTTTCTTTTTTAGACAGG
66 TCAATCATTTTATTTTCTGACTTATAGTTTAAGCCTAGTCGATTTTCATTTTTAGACAGG
* * * *
11264548 TCATTTTCATTTTCTGACTCATGATTTAATCTGAGTCATTTTCATTTTTTGACTCCTAGTTTTAT
1 TCATTTTCATTTTCTGACTCATG-TTTAATCTCAGTCATTTTCATTTTTTAACTCATAGTTTAAT
* * *
11264613 CT-AGATCCTTTTCATTTTTTGACTTAT-GATTTAA-TCTAGATC-ATTTTCATTTTT
65 CTCA-ATCATTTT-ATTTTCTGACTTATAG-TTTAAGCCTAG-TCGATTTTCATTTTT
11264667 TGACTCATGG
Statistics
Matches: 98, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
125 22 0.22
126 57 0.58
127 19 0.19
ACGTcount: A:0.20, C:0.15, G:0.11, T:0.54
Consensus pattern (125 bp):
TCATTTTCATTTTCTGACTCATGTTTAATCTCAGTCATTTTCATTTTTTAACTCATAGTTTAATC
TCAATCATTTTATTTTCTGACTTATAGTTTAAGCCTAGTCGATTTTCATTTTTAGACAGG
Found at i:11266065 original size:177 final size:172
Alignment explanation
Indices: 11265597--11266141 Score: 481
Period size: 177 Copynumber: 3.1 Consensus size: 172
11265587 ATTCTAGTCG
** * *
11265597 TTTTCATTTTTTGACTTGTGGTTTAATCCTAGTTGTTTTCATTTTCTAACTGATAATTTAATTTC
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAGTTGTTTTCATTTTCTGACTG-TGATTTAATTTC
* * * *
11265662 GATCATTTTTATTTTTTGACTCGTGGTTTAATCGC-AATCATTTTCT-TTTTCTAACTTATGATT
65 G-TCGTTTTTCTTTTTTGACTCGTGGTTTAATC-CTGATCATTTT-TATTTTCTAACTAATGATT
* * * *
11265725 TAATTTGTCATTTTTATTTCTTTGACTTATGATTTAATTTTGATCAT
127 TAATTAGTCATTTTTATTTCTCTGACTTGTGATTTAA-TCTGATCAT
* * ** * *
11265772 TTTTTATTTTTTGACTCATGGTGTAATTTTGGTTGTTTTCATTTTTTGACTGGTGATTTAATTTT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAGTTGTTTTCATTTTCTGACT-GTGATTTAA-TTT
* * * ** * * * * * **
11265837 GGTCG-TTTTCATTTTTTGGCTCATCATTTTATCCCTGCT-AGTTTGATTTTCTTACTCGTGATT
64 CGTCGTTTTTC-TTTTTTGACTCGTGGTTTAAT-CCTGATCATTTTTATTTTCTAACTAATGATT
** *
11265900 TAATACTAGTCATTTTTATTTCTCTGACTTGCAATTTAATCATGGTCAT
127 TAAT--TAGTCATTTTTATTTCTCTGACTTGTGATTTAATC-TGATCAT
* * *
11265949 TTTTCATTTTTTGACACATGGTTTAATCCCAGTCT-TTTTTATTTTCTGACTCGTGATTTAATTT
1 TTTTCATTTTTTGACTCATGGTTTAATCCTAGT-TGTTTTCATTTTCTGACT-GTGATTTAATTT
* * * * *
11266013 CAGTCGTTTTTCTTTTCTGACTCGTGGTTTAATCTTGGTCATTTTTATTTTCTGACTAATAATTT
64 C-GTCGTTTTTCTTTTTTGACTCGTGGTTTAATCCTGATCATTTTTATTTTCTAACTAATGATTT
* * * *
11266078 AATTTCGATCA-TTTTAGTTCTCTAACTCGTGATTTAATCTCGATCAT
128 AA-TTAG-TCATTTTTATTTCTCTGACTTGTGATTTAATCT-GATCAT
11266125 TTTTCATTTTTTGACTC
1 TTTTCATTTTTTGACTC
11266142 TTGATGTAAT
Statistics
Matches: 289, Mismatches: 65, Indels: 31
0.75 0.17 0.08
Matches are distributed among these distances:
174 4 0.01
175 91 0.31
176 61 0.21
177 126 0.44
178 7 0.02
ACGTcount: A:0.19, C:0.14, G:0.12, T:0.54
Consensus pattern (172 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCTAGTTGTTTTCATTTTCTGACTGTGATTTAATTTCG
TCGTTTTTCTTTTTTGACTCGTGGTTTAATCCTGATCATTTTTATTTTCTAACTAATGATTTAAT
TAGTCATTTTTATTTCTCTGACTTGTGATTTAATCTGATCAT
Found at i:11267378 original size:211 final size:208
Alignment explanation
Indices: 11266844--11267523 Score: 629
Period size: 211 Copynumber: 3.2 Consensus size: 208
11266834 ATCTCGATCA
* * * * *
11266844 TTTTCATTTTCTGACTCGTGGTTTAATCTCAATCATTTTTCAATTTCTAATTCATGGTTTAATCC
1 TTTTCATTTTCTAACTCGTGGTTTAATCTCGATCATTTTTCATTTTCGAA-TCATGGTTTAATTC
* * * * *
11266909 TGATTGTTTTCATTTTCTGACTCGAGGTTTAATCTTGGTCATTTTCATTTTTTGACTTGGGGTAT
65 TGATCGTTTTCATTTTCTGACTTGTGGTTTAATC-TAGTCATTTTCATTTTTTGACTTGTGGT-T
* * * **
11266974 AAC-CTT-GATCATTTTCATTTTTTGACT-TGCGATTT-AATCTCAATTATTTTTC-TTTTCTAA
128 TACTCTTAG-TCATTTTCATTTTCTGACTCTG-G-TTTAAACCT-GGTTA-TTTTCATTTTCTAA
* * * * *
11267034 CTTGTGTTTTAATTCTAATAG
188 CTAGTGATTTAATTTTGATTG
* * * * * * *
11267055 TTTTCATTTTCTAACTCATGGTTTAGTC-CTGGTCGTTTTTCTTTTTTTGAATCATGGTCTAA-T
1 TTTTCATTTTCTAACTCGTGGTTTAATCTC-GATCATTTTTC-ATTTTCGAATCATGGTTTAATT
* * * **
11267118 CTCAATCGTTTTCATTTTTTGACTTGTGGTTAAATCTGAACCATTTTCATTTTTTGACTTGTGGT
64 CT-GATCGTTTTCATTTTCTGACTTGTGGTTTAATCT-AGTCATTTTCATTTTTTGACTTGTGGT
*
11267183 TTACTCTTAGTCACTTTTCATTTTCTAACTCATGGTTTAAACCTGGTTATTTTCATTTTCTAACT
127 TTACTCTTAGTCA-TTTTCATTTTCTGACTC-TGGTTTAAACCTGGTTATTTTCATTTTCTAACT
11267248 AGTGATTTAATTTTGATTG
190 AGTGATTTAATTTTGATTG
* * * *
11267267 TTTTCATTTTTTGACTTGTGGTTTAATCTCGATCA-TTTTCATTTTCGAACTCATGATTTAATTC
1 TTTTCATTTTCTAACTCGTGGTTTAATCTCGATCATTTTTCATTTTCGAA-TCATGGTTTAATTC
* * ** *
11267331 TGGTCGTTTTCATTTTCTAACTTGTGGTTTAATTCTAGTCATTTTCATTTTCAGACTCGTGGTTT
65 TGATCGTTTTCATTTTCTGACTTGTGGTTTAA-TCTAGTCATTTTCATTTTTTGACTTGTGGTTT
* ** ** * * * * * *
11267396 AATCCCAGTTGTTTTTCTTTTTCTGACTCGTGGTTTAATCCTGGTTGTTTTCATTTTTTGACTCG
129 ACTCTTAG-TCATTTTCATTTTCTGACTC-TGGTTTAAACCTGGTTATTTTCATTTTCTAACTAG
* * *
11267461 TGGTTTAATCTTGCTTG
192 TGATTTAATTTTGATTG
*
11267478 TTTTCATTTTCTAACTCGTGGTTTAATCTTGATCATTTTTCATTTT
1 TTTTCATTTTCTAACTCGTGGTTTAATCTCGATCATTTTTCATTTT
11267524 TTGACTTGTA
Statistics
Matches: 378, Mismatches: 74, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
210 14 0.04
211 263 0.70
212 93 0.25
213 6 0.02
214 2 0.01
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (208 bp):
TTTTCATTTTCTAACTCGTGGTTTAATCTCGATCATTTTTCATTTTCGAATCATGGTTTAATTCT
GATCGTTTTCATTTTCTGACTTGTGGTTTAATCTAGTCATTTTCATTTTTTGACTTGTGGTTTAC
TCTTAGTCATTTTCATTTTCTGACTCTGGTTTAAACCTGGTTATTTTCATTTTCTAACTAGTGAT
TTAATTTTGATTG
Found at i:11267520 original size:317 final size:315
Alignment explanation
Indices: 11266842--11267523 Score: 773
Period size: 317 Copynumber: 2.1 Consensus size: 315
11266832 TGATCTCGAT
* * * *
11266842 CATTTTCATTTTCTGACTCGTGGTTTAATCTCAATCATTTTTCAATTTCTAATTCATGGTTTAAT
1 CATTTTCATTTTCTGACTCGTGGTTTAATCT-TATCATTTTTCATTTTCTAACTCATGGTTTAAA
* * * * *
11266907 CCTGATTGTTTTCATTTTCTGACTCGAGGTTTAATCTTGGTCATTTTCATTTTTTGACTTGGGGT
65 CCTGATTATTTTCATTTTCTAACTAGAGATTTAATCTTGATCATTTTCATTTTTTGACTTGGGGT
* * ** * *
11266972 ATAACCTTGATCATTTTCATTTTTTGACTTGCGATTTAATCTCAATTATTTTTCTTTTCTAACTT
130 ATAACCTCGATCATTTTCATTTTTCGACTCACGATTTAATCTCAAGTAGTTTTCTTTTCTAACTT
* * ** *
11267037 GTGTTTTAATTCTAATAGTTTTCATTTTCTAACTCATGGTTTAGTCCTGGTCGTTTTTCTTTTTT
195 GTGGTTTAATTCTAATAGTTTTCATTTTCTAACTCATGGTTTAATCCCAGTCGTTTTTCTTTTTC
*
11267102 TGAATCATGGTCTAATCTCAATCGTTTTCATTTTTTGACTTGTGGTTAAATCTGAAC
260 TGAATCATGGTCTAATCTCAATCGTTTTCATTTTTTGACTCGTGGTTAAATCTG-AC
* * * *
11267159 CATTTTCATTTTTTGACTTGTGGTTTACTCTTAGTCACTTTTCATTTTCTAACTCATGGTTTAAA
1 CATTTTCATTTTCTGACTCGTGGTTTAATCTTA-TCATTTTTCATTTTCTAACTCATGGTTTAAA
* * * ** *
11267224 CCTGGTTATTTTCATTTTCTAACTAGTGATTTAATTTTGATTGTTTTCATTTTTTGACTTGTGGT
65 CCTGATTATTTTCATTTTCTAACTAGAGATTTAATCTTGATCATTTTCATTTTTTGACTTGGGGT
* * * ** *
11267289 TTAATCTCGATCATTTTCA-TTTTCGAACTCATGATTTAAT-TCTGGTCGTTTTCATTTTCTAAC
130 ATAACCTCGATCATTTTCATTTTTCG-ACTCACGATTTAATCTCAAGTAGTTTTC-TTTTCTAAC
* * *
11267352 TTGTGGTTTAATTCTAGTCA-TTTTCATTTTC-AGACTCGTGGTTTAATCCCAGTTGTTTTTCTT
193 TTGTGGTTTAATTCTAAT-AGTTTTCATTTTCTA-ACTCATGGTTTAATCCCAGTCGTTTTTCTT
* * * ** * *
11267415 TTTCTGACTCGTGGTTTAATC-CTGGTTGTTTTCATTTTTTGACTCGTGGTTTAATCTTG-C
256 TTTCTGAATCATGGTCTAATCTC-AATCGTTTTCATTTTTTGACTCGTGGTTAAATC-TGAC
** *
11267475 TTGTTTTCATTTTCTAACTCGTGGTTTAATCTTGATCATTTTTCATTTT
1 -CATTTTCATTTTCTGACTCGTGGTTTAATCTT-ATCATTTTTCATTTT
11267524 TTGACTTGTA
Statistics
Matches: 302, Mismatches: 54, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
316 17 0.06
317 281 0.93
318 4 0.01
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.52
Consensus pattern (315 bp):
CATTTTCATTTTCTGACTCGTGGTTTAATCTTATCATTTTTCATTTTCTAACTCATGGTTTAAAC
CTGATTATTTTCATTTTCTAACTAGAGATTTAATCTTGATCATTTTCATTTTTTGACTTGGGGTA
TAACCTCGATCATTTTCATTTTTCGACTCACGATTTAATCTCAAGTAGTTTTCTTTTCTAACTTG
TGGTTTAATTCTAATAGTTTTCATTTTCTAACTCATGGTTTAATCCCAGTCGTTTTTCTTTTTCT
GAATCATGGTCTAATCTCAATCGTTTTCATTTTTTGACTCGTGGTTAAATCTGAC
Found at i:11267636 original size:211 final size:211
Alignment explanation
Indices: 11267199--11268151 Score: 694
Period size: 211 Copynumber: 4.5 Consensus size: 211
11267189 TTAGTCACTT
* * * * * * * * *
11267199 TTCATTTTCTAACTCATGGTTTAAACCTGGTTATTTTCATTTTCTAACTAGTGATTTAATTTTGA
1 TTCATTTTTTGACTCGTGGTTTAATCCTGGTTATTTTCATTTTTTGACTCGTGGTTTAATCTTGA
* * * * * *
11267264 TTGTTTTCATTTTTTGACTTGTGGTTTAATCTCGATCA-TTTTCA-TTTTCGAACTCATGATTTA
66 TTGTTTTCATTTTCTAACTCGTGGTTTAATCTTGATCATTTTTCATTTTTTG-ACTCGTGATTTA
* * * ** * * * * *
11267327 ATTCTGGTCGTTTTCATTT-TCTAACTTGTGGTTTAATTCTAGTCATTTTCATTTTCAGACTCGT
130 A-TCAGGTCATTTTCATTTCT-TGACTTGTAATTTAATCCTGGTCGTATTCATTTTCTGACTCGT
** * *
11267391 GGTTTAATCCCAGTTGTTT
193 AATTTAATCTCAGTTGTTA
*
11267410 TTC-TTTTTCTGACTCGTGGTTTAATCCTGGTTGTTTTCATTTTTTGACTCGTGGTTTAATCTTG
1 TTCATTTTT-TGACTCGTGGTTTAATCCTGGTTATTTTCATTTTTTGACTCGTGGTTTAATCTTG
* * *
11267474 CTTGTTTTCATTTTCTAACTCGTGGTTTAATCTTGATCATTTTTCATTTTTTGACTTGTAATTTA
65 ATTGTTTTCATTTTCTAACTCGTGGTTTAATCTTGATCATTTTTCATTTTTTGACTCGTGATTTA
* * * *
11267539 ATCACGGTCATATTCATTTCTTGACTCGTAATTTAATCCTGGTCGTATTCATTTTTTGACTCATA
130 ATCA-GGTCATTTTCATTTCTTGACTTGTAATTTAATCCTGGTCGTATTCATTTTCTGACTCGTA
**
11267604 ATTTAATCTTGGTTG-TA
194 ATTTAATCTCAGTTGTTA
** * * ***
11267621 TTCATTTTTTGACTCGTGGTTTAATCCTAATCATTTTTATTTTTTGACTCGTGGTTTAATCCCAA
1 TTCATTTTTTGACTCGTGGTTTAATCCTGGTTATTTTCATTTTTTGACTCGTGGTTTAATCTTGA
* * * *
11267686 TCGTTTTCATTTTCTAACTCATGGTTTAATCCT-AGTTATTTTTCATTTTTTGACTCGTGATTTA
66 TTGTTTTCATTTTCTAACTCGTGGTTTAATCTTGA-TCATTTTTCATTTTTTGACTCGTGATTTA
* * *
11267750 ATCTAGGTCATTTTCATTTCTTGACTTGAAATTTGAA-CTTGGTCGTATTCATTTTCTAACTCGT
130 ATC-AGGTCATTTTCATTTCTTGACTTGTAATTT-AATCCTGGTCGTATTCATTTTCTGACTCGT
* *
11267814 AATTTAATCTCA---ATCA
193 AATTTAATCTCAGTTGTTA
* * *** * * * * *
11267830 TT--TTTTTTAACTCATGGTTTAATCCCAATCATTTTCTTTTTTTGACTCATGGTTTAATCCTAA
1 TTCATTTTTTGACTCGTGGTTTAATCCTGGTTATTTTCATTTTTTGACTCGTGGTTTAATCTTGA
** * * * * * *
11267893 TCATTTTCATTTTCTGACTTGTGGTTTAATCCT-AGT--TGTTTTC-TTTTTATAACTCATGGTT
66 TTGTTTTCATTTTCTAACTCGTGGTTTAATCTTGA-TCAT-TTTTCATTTTT-TGACTCGTGATT
* * * * * * * *
11267954 TAATCTCGGTCATTTTTCATTT-TCTAACTCT-TAGTTTTATCTTGGTCGTTTTTATTTTTTGAC
128 TAATC-AGGTCA-TTTTCATTTCT-TGACT-TGTAATTTAATCCTGGTCGTATTCATTTTCTGAC
* ** *
11268017 TTGTGGTTTAATCTC-GATCGTT-
189 TCGTAATTTAATCTCAG-TTGTTA
* ** * *
11268039 TTCATTTTCTTG-CTCATGGTTTAATTTTGGTTATTTTCATTCTTTGACTCTTGGTTTAAT-TTC
1 TTCATTTT-TTGACTCGTGGTTTAATCCTGGTTATTTTCATTTTTTGACTCGTGGTTTAATCTT-
* * * * * * *
11268102 GA-TGATTTTTATTCTCTGACTCATGATTTAATTTTGACCA-TTTTCATTTT
64 GATTG-TTTTCATTTTCTAACTCGTGGTTTAATCTTGATCATTTTTCATTTT
11268152 CTATCCTGGG
Statistics
Matches: 598, Mismatches: 115, Indels: 57
0.78 0.15 0.07
Matches are distributed among these distances:
205 6 0.01
206 27 0.05
207 134 0.22
208 1 0.00
209 5 0.01
210 7 0.01
211 326 0.55
212 86 0.14
213 6 0.01
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.53
Consensus pattern (211 bp):
TTCATTTTTTGACTCGTGGTTTAATCCTGGTTATTTTCATTTTTTGACTCGTGGTTTAATCTTGA
TTGTTTTCATTTTCTAACTCGTGGTTTAATCTTGATCATTTTTCATTTTTTGACTCGTGATTTAA
TCAGGTCATTTTCATTTCTTGACTTGTAATTTAATCCTGGTCGTATTCATTTTCTGACTCGTAAT
TTAATCTCAGTTGTTA
Found at i:11269966 original size:69 final size:69
Alignment explanation
Indices: 11269860--11270026 Score: 239
Period size: 69 Copynumber: 2.4 Consensus size: 69
11269850 CTAAATTGTG
**
11269860 TTAATCTC-AGTCGTTTTTCATTTTTTTGACTTGGGGCTTTAAT-CTCGATTGTTTTTGTTATGA
1 TTAATCTCGA-TCG-TTTTCA-TTTTTTGACTCAGGGCTTTAATCCT-GATTGTTTTTGTTATGA
*
11269923 CTTGGGGT
62 CTTGCGGT
*
11269931 TTAATCTCGATCGTTTTCATTTTTTGACTCAGGGCTTTAATCCTGATTTTTTTTGTTATGACTTG
1 TTAATCTCGATCGTTTTCATTTTTTGACTCAGGGCTTTAATCCTGATTGTTTTTGTTATGACTTG
11269996 CGGT
66 CGGT
*
11270000 TTAATCTCGGTCGTTTTCATTTTTTGA
1 TTAATCTCGATCGTTTTCATTTTTTGA
11270027 TTTAGGGTTT
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
69 69 0.78
70 8 0.09
71 11 0.12
72 1 0.01
ACGTcount: A:0.15, C:0.14, G:0.19, T:0.52
Consensus pattern (69 bp):
TTAATCTCGATCGTTTTCATTTTTTGACTCAGGGCTTTAATCCTGATTGTTTTTGTTATGACTTG
CGGT
Found at i:11270586 original size:67 final size:71
Alignment explanation
Indices: 11270515--11270648 Score: 168
Period size: 67 Copynumber: 1.9 Consensus size: 71
11270505 TTAATCCTGA
*
11270515 TCGTTTTCATTTTTTGACCCATGATTTAA-CCC-GTCATT-T-TTTTCTCTGACTCGAGATTTAA
1 TCGTTTTCATTTTTTCACCCATGATTTAATCCCAGTCATTATCTTTTCTCTGACTCGAGATTTAA
11270576 TTCCAG
66 TTCCAG
* * * * * * *
11270582 TCGTTTTTATTTTTTCACTCATGGTTTAATCCCAGTCGTTATCTTTTCTTTTACTCGTGATTTAA
1 TCGTTTTCATTTTTTCACCCATGATTTAATCCCAGTCATTATCTTTTCTCTGACTCGAGATTTAA
11270647 TT
66 TT
11270649 TTGGTCATTT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
67 25 0.45
68 3 0.05
69 5 0.09
70 1 0.02
71 21 0.38
ACGTcount: A:0.18, C:0.20, G:0.11, T:0.51
Consensus pattern (71 bp):
TCGTTTTCATTTTTTCACCCATGATTTAATCCCAGTCATTATCTTTTCTCTGACTCGAGATTTAA
TTCCAG
Found at i:11271211 original size:85 final size:85
Alignment explanation
Indices: 11271068--11271234 Score: 280
Period size: 85 Copynumber: 2.0 Consensus size: 85
11271058 TTTAATCCCC
* *
11271068 AGTCATTTTCATATTCTAACTTGTGGTTTAATCCAAATTATTTTCATTTTTTGACTTTTGGTTTA
1 AGTCATTTTCATATTCTAACTTGTGGTTTAATCCAAATCATTTTCATTTTCTGACTTTTGGTTTA
11271133 ATCCCTGTCATTTTCATCCT
66 ATCCCTGTCATTTTCATCCT
* * * *
11271153 AGTCATTTTTATTTTCTTACTTGTGGTTTAATCCAAGTCATTTTCATTTTCTGACTTTTGGTTTA
1 AGTCATTTTCATATTCTAACTTGTGGTTTAATCCAAATCATTTTCATTTTCTGACTTTTGGTTTA
11271218 ATCCCTGTCATTTTCAT
66 ATCCCTGTCATTTTCAT
11271235 TTGTTGACTC
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 76 1.00
ACGTcount: A:0.20, C:0.17, G:0.10, T:0.53
Consensus pattern (85 bp):
AGTCATTTTCATATTCTAACTTGTGGTTTAATCCAAATCATTTTCATTTTCTGACTTTTGGTTTA
ATCCCTGTCATTTTCATCCT
Found at i:11271336 original size:191 final size:191
Alignment explanation
Indices: 11270964--11271340 Score: 418
Period size: 191 Copynumber: 2.0 Consensus size: 191
11270954 TTAATCTCGA
* **
11270964 TCATTTTCATTTTCTGATTGGTGGTTTAATTCGGGTCATTTTCATTTTCAAACTTATGGTTTAAT
1 TCATTTTCATTTTCTGATTGGTGGTTTAATCCAAGTCATTTTCATTTTCAAACTTATGGTTTAAT
* * * * *
11271029 CTTGATCATTTTCATTTTTTGACTCATTGTTTAATCCCCAGTCATTTTCATATTCTAACTTGTGG
66 CCTGATCATTTTCATTTGTTGACTCATGGTTTAATCCCCAATCATTTTCATATTCTAACTAGTGG
* * ** * *** * **
11271094 TTTAATCCAAATTATTTTCATTTTTTGACTTTTGGTTTAATCCCTGTCATTTTCATCCTAG
131 TTTAATACAAATCATTTTCATTTACTCACACATGATTTAATCCAGGTCATTTTCATCCTAG
* * ** *
11271155 TCATTTTTATTTTCTTACTT-GTGGTTTAATCCAAGTCATTTTCATTTTCTGACTTTTGGTTTAA
1 TCATTTTCATTTTCTGA-TTGGTGGTTTAATCCAAGTCATTTTCATTTTCAAACTTATGGTTTAA
* * ** * *
11271219 TCCCTG-TCATTTTCATTTGTTGACTCCTGGTTTAAT-CTCAATTGTTTTCATTTTCTGACTAGT
65 T-CCTGATCATTTTCATTTGTTGACTCATGGTTTAATCCCCAATCATTTTCATATTCTAACTAGT
* *
11271282 GGTTTAATACTAATCATTTTTCATTTACTCACACATGATTTAATTCAGGTCATTTTCAT
129 GGTTTAATACAAATCA-TTTTCATTTACTCACACATGATTTAATCCAGGTCATTTTCAT
11271341 TTATTGACTC
Statistics
Matches: 151, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
190 33 0.22
191 113 0.75
192 5 0.03
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (191 bp):
TCATTTTCATTTTCTGATTGGTGGTTTAATCCAAGTCATTTTCATTTTCAAACTTATGGTTTAAT
CCTGATCATTTTCATTTGTTGACTCATGGTTTAATCCCCAATCATTTTCATATTCTAACTAGTGG
TTTAATACAAATCATTTTCATTTACTCACACATGATTTAATCCAGGTCATTTTCATCCTAG
Found at i:11272152 original size:30 final size:30
Alignment explanation
Indices: 11272116--11272205 Score: 99
Period size: 36 Copynumber: 2.8 Consensus size: 30
11272106 ATTTTCTAGT
*
11272116 TAGTGGTTTAATCCCGGTCATTTTTTTTAC
1 TAGTGGTTTAATCCCAGTCATTTTTTTTAC
*
11272146 TAGTGGTTTAATCTCAGTCATTTTCATTTTTTTTAC
1 TAGTGGTTTAATC-C---CA--GTCATTTTTTTTAC
*
11272182 TAGTGGTTTAATCTCAGTCATTTT
1 TAGTGGTTTAATCCCAGTCATTTT
11272206 CATTTTTTGA
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
30 20 0.40
31 1 0.02
32 2 0.04
34 1 0.02
36 26 0.52
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.52
Consensus pattern (30 bp):
TAGTGGTTTAATCCCAGTCATTTTTTTTAC
Found at i:11272893 original size:209 final size:209
Alignment explanation
Indices: 11272620--11273139 Score: 493
Period size: 209 Copynumber: 2.5 Consensus size: 209
11272610 TTATTTTGGT
* *
11272620 CATTTTCATTTTCTT-ACTTATGATTTAATCCCTATTGTTTTCATTTTCTAACTCGTGATTTAAT
1 CATTTTCATTTT-TTGACTTATGATATAATCCCTATCGTTTTCATTTTCTAACTCGTGATTTAAT
** * * *
11272684 TCCAATTGTTTTCATTTTTTGACTCGTGGTTTAAT-CTGATCATTTTCA-TTTCTGACCCTTGA-
65 TCCAATCATTTT--TATTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACCCTTGAT
* * * *** * *
11272746 TTTATTCTCAATCGTTATCTTTTCATTGAC-TAGTGATTTAATTCTGGTTGTTTTGATTTTTTGA
128 TTTATCCT-AATCGTTATCTTTTCACTGACTTA-TGATTTAATTCTGATCACTTTAATATTTTGA
*
11272810 CTCATGGTTTAATCCCT-AC
191 CTCATGATTTAAT-CCTGAC
* * * * *
11272829 CATTTTCATTTTTTGACTTGTGGTATAAT-CCTAATCGTTTTTATTTTCTAACTTGTGGTTTAAT
1 CATTTTCATTTTTTGACTTATGATATAATCCCT-ATCGTTTTCATTTTCTAACTCGTGATTTAAT
**** *
11272893 TTTGGTCATTTTTATTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTTTGACCCTTGATTT
65 TCCAATCATTTTTATTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACCCTTGATTT
** *
11272958 TATCCTGGTCGTTATCTTTTCACTGACTTATGATTTAATTTTGATCACTTTAATATTTTGACTCA
130 TATCCTAATCGTTATCTTTTCACTGACTTATGATTTAATTCTGATCACTTTAATATTTTGACTCA
* **
11273023 TGATTTAATTCTGGT
195 TGATTTAATCCTGAC
* * ** * * * *
11273038 CATTTTCATTTTTTGACTCATGATTTAAT-TTTGATAGTTTTCATTTTTTGACTCATCG-TTTAA
1 CATTTTCATTTTTTGACTTATGATATAATCCCT-ATCGTTTTCATTTTCTAACTCGT-GATTTAA
*
11273101 TTCCAATCATTTCATT-TTTCTGACTTGTGATTTAATCCC
64 TTCCAATCATTT--TTATTT-TGACTCGTGATTTAATCCC
11273140 AATTGTTTTT
Statistics
Matches: 250, Mismatches: 50, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
207 19 0.08
208 19 0.08
209 179 0.72
210 13 0.05
211 20 0.08
ACGTcount: A:0.20, C:0.16, G:0.11, T:0.53
Consensus pattern (209 bp):
CATTTTCATTTTTTGACTTATGATATAATCCCTATCGTTTTCATTTTCTAACTCGTGATTTAATT
CCAATCATTTTTATTTTGACTCGTGATTTAATCCCGATCATTTTCATTTTCTGACCCTTGATTTT
ATCCTAATCGTTATCTTTTCACTGACTTATGATTTAATTCTGATCACTTTAATATTTTGACTCAT
GATTTAATCCTGAC
Found at i:11273069 original size:18 final size:18
Alignment explanation
Indices: 11272981--11273071 Score: 59
Period size: 18 Copynumber: 5.2 Consensus size: 18
11272971 ATCTTTTCAC
*
11272981 TGACTTATGATTTAATTT
1 TGACTCATGATTTAATTT
*
11272999 TGA-TCACT--TTAATATTT
1 TGACTCA-TGATTTA-ATTT
*
11273016 TGACTCATGATTTAATTC
1 TGACTCATGATTTAATTT
* *
11273034 TG-GTCAT--TTTCATTTTT
1 TGACTCATGATTT-A-ATTT
11273051 TGACTCATGATTTAATTT
1 TGACTCATGATTTAATTT
11273069 TGA
1 TGA
11273072 TAGTTTTCAT
Statistics
Matches: 54, Mismatches: 9, Indels: 20
0.65 0.11 0.24
Matches are distributed among these distances:
15 3 0.06
16 4 0.07
17 18 0.33
18 22 0.41
19 4 0.07
20 3 0.06
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.53
Consensus pattern (18 bp):
TGACTCATGATTTAATTT
Found at i:11273273 original size:69 final size:69
Alignment explanation
Indices: 11273164--11273311 Score: 194
Period size: 69 Copynumber: 2.1 Consensus size: 69
11273154 TTTTGACCTA
* * * *
11273164 TGGTTTAATCTCAATCATTTTTATTTTTGACTCATGGTTTAATC-CTGATCATTTTCATTTTCTG
1 TGGTTTAATCTCAATCATTTTTATTTTTGACTCATAGTTTAATCACAG-TCATTTTAATTTTCTA
11273228 A-TAG
65 ACTAG
* *
11273232 TGGTTAAATCT-AAGTCATTTTTATCTTTTGACTCATAGTTTAATCACAGTCGTTTTAATTTTCT
1 TGGTTTAATCTCAA-TCATTTTTAT-TTTTGACTCATAGTTTAATCACAGTCATTTTAATTTTCT
11273296 AACTAG
64 AACTAG
11273302 TGGTTTAATC
1 TGGTTTAATC
11273312 CTGGTTGTTT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
67 2 0.03
68 20 0.29
69 33 0.48
70 14 0.20
ACGTcount: A:0.24, C:0.14, G:0.12, T:0.49
Consensus pattern (69 bp):
TGGTTTAATCTCAATCATTTTTATTTTTGACTCATAGTTTAATCACAGTCATTTTAATTTTCTAA
CTAG
Found at i:11274197 original size:63 final size:63
Alignment explanation
Indices: 11274127--11274249 Score: 158
Period size: 63 Copynumber: 2.0 Consensus size: 63
11274117 TCCCAATCGT
* * *
11274127 TTTCATTTTCTAACTCATGATTTAATC-CTGGTCATTTTTATTTCTTGACTCATGATTTAAACC
1 TTTCATTTTCTAACTCATGATTTAATCTCT-ATCATTTTCATTTCTTAACTCATGATTTAAACC
* * * * *
11274190 TTTCATTTTCTGACTCGTGGTTTAATCTCTATCATTTTCATTTTTTAACTCATGGTTTAA
1 TTTCATTTTCTAACTCATGATTTAATCTCTATCATTTTCATTTCTTAACTCATGATTTAA
11274250 TCTTAGTCGT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
63 49 0.96
64 2 0.04
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.51
Consensus pattern (63 bp):
TTTCATTTTCTAACTCATGATTTAATCTCTATCATTTTCATTTCTTAACTCATGATTTAAACC
Found at i:11274213 original size:28 final size:30
Alignment explanation
Indices: 11274167--11274228 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 30
11274157 GTCATTTTTA
*
11274167 TTTCTTGACTCATGATTTAAAC-CTTTCAT
1 TTTCTTGACTCATGATTTAAACTCTATCAT
* * *
11274196 TTTC-TGACTCGTGGTTTAATCTCTATCAT
1 TTTCTTGACTCATGATTTAAACTCTATCAT
11274225 TTTC
1 TTTC
11274229 ATTTTTTAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 14 0.50
29 14 0.50
ACGTcount: A:0.19, C:0.21, G:0.10, T:0.50
Consensus pattern (30 bp):
TTTCTTGACTCATGATTTAAACTCTATCAT
Found at i:11274306 original size:239 final size:238
Alignment explanation
Indices: 11273844--11274498 Score: 848
Period size: 239 Copynumber: 2.7 Consensus size: 238
11273834 ATCCCGATCA
* * * * *
11273844 TTTTC-TTTTTCTCACTCGTGGTTTAATGCTAGTCATTTTTCATTTTCTAACTCATGATTTAATC
1 TTTTCATTTTT-TGACTCGTGGTTTAATCCCAATC-GTTTTCATTTTCTAACTCATGATTTAATC
*
11273908 CTAATCATTTTTATTTCTTGACTCATGATTTAAACCTAGTTGCATTCATTTTCTAACTCGTGGTT
64 CTGATCATTTTTATTTCTTGACTCATGATTTAAACC----T---TTCATTTTCTAACTCGTGGTT
* * * *
11273973 TAATCTCGATCATTTTTATTTTCTAACTCATGGTTTAATTTTGGTCGTTTTCATTTTCTGACTTA
122 TAATCTC-ATCATTTTCATTTTTTAACTCATGGTTTAATCTTAGTCGTTTTCATTTTCTGACTTA
*
11274038 TGGTTTTAATTTTAGTCATTTTTATTTTCGGTCTCATGATTTAATTTTGGTTG
186 TGGTTTTAATTTTAGTCATTTTTATTTTCGATCTCATGATTTAATTTTGGTTG
11274091 TTTTCATTTTTTGACTCGTGGTTTAATCCCAATCGTTTTCATTTTCTAACTCATGATTTAATCCT
1 TTTTCATTTTTTGACTCGTGGTTTAATCCCAATCGTTTTCATTTTCTAACTCATGATTTAATCCT
* *
11274156 GGTCATTTTTATTTCTTGACTCATGATTTAAACCTTTCATTTTCTGACTCGTGGTTTAATCTCTA
66 GATCATTTTTATTTCTTGACTCATGATTTAAACCTTTCATTTTCTAACTCGTGGTTTAATCTC-A
11274221 TCATTTTCATTTTTTAACTCATGGTTTAATCTTAGTCGTTTTCATTTTCTGACTTATGGTTTTAA
130 TCATTTTCATTTTTTAACTCATGGTTTAATCTTAGTCGTTTTCATTTTCTGACTTATGGTTTTAA
11274286 TTTTAGTCATTTTTATTTTCGATCTCATGATTTAATTTTGGTTG
195 TTTTAGTCATTTTTATTTTCGATCTCATGATTTAATTTTGGTTG
* * * * *
11274330 TTTTCATTTTTTGACTTGTGGTTTAATCCCAATCGTTTTCATTTTTTGACAT-GTGATTTAGT-C
1 TTTTCATTTTTTGACTCGTGGTTTAATCCCAATCGTTTTCATTTTCTAAC-TCATGATTTAATCC
* ** * * * *
11274393 TCGATCATTTTCATTTCTCTGACTTGTGATTTAATGCTAGTCATTTTCATTTTCTTACTTGAGGT
65 T-GATCATTTTTATTTCT-TGACTCATGATTTAA----A--C-CTTTCATTTTCTAACTCGTGGT
* *
11274458 TTAATCTCAGTCATTTTCATTTTTTGAGTCATGGTTTAATC
121 TTAATCTCA-TCATTTTCATTTTTTAACTCATGGTTTAATC
11274499 CTGGTTATTT
Statistics
Matches: 367, Mismatches: 29, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
238 2 0.01
239 201 0.55
240 14 0.04
242 1 0.00
244 1 0.00
246 64 0.17
247 79 0.22
248 5 0.01
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.53
Consensus pattern (238 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCCCAATCGTTTTCATTTTCTAACTCATGATTTAATCCT
GATCATTTTTATTTCTTGACTCATGATTTAAACCTTTCATTTTCTAACTCGTGGTTTAATCTCAT
CATTTTCATTTTTTAACTCATGGTTTAATCTTAGTCGTTTTCATTTTCTGACTTATGGTTTTAAT
TTTAGTCATTTTTATTTTCGATCTCATGATTTAATTTTGGTTG
Found at i:11275064 original size:63 final size:63
Alignment explanation
Indices: 11274968--11275097 Score: 242
Period size: 63 Copynumber: 2.1 Consensus size: 63
11274958 TCATTTTCAT
11274968 TTTTTGACTTGTGGTTTAATTGCAGTCGTTTTCATTTTCTGACACATAGTTTAATCCCAGTCA
1 TTTTTGACTTGTGGTTTAATTGCAGTCGTTTTCATTTTCTGACACATAGTTTAATCCCAGTCA
* *
11275031 TTTTTGACTTGTGGTTTAATTGCAGTCGTTTTCATTTTCTGACTCATAGTTTAATCCTAGTCA
1 TTTTTGACTTGTGGTTTAATTGCAGTCGTTTTCATTTTCTGACACATAGTTTAATCCCAGTCA
11275094 TTTT
1 TTTT
11275098 CAATTTTTGA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (63 bp):
TTTTTGACTTGTGGTTTAATTGCAGTCGTTTTCATTTTCTGACACATAGTTTAATCCCAGTCA
Found at i:11275658 original size:68 final size:69
Alignment explanation
Indices: 11275580--11275758 Score: 191
Period size: 68 Copynumber: 2.6 Consensus size: 69
11275570 GATCATTTTT
*
11275580 ATTTTTTGACTTATGATTTAATCTCTATCATTTTCATTTCTGACTGGTGATTTAATGAAG-TCAT
1 ATTTTCTGACTTATGATTTAATCTCTATCATTTTCATTTCTGACTGGTGATTTAATGAAGTTCAT
11275644 TATC
66 TATC
* * * * ***
11275648 ATTTTCTGACTTATGGTTTAATCT-TGGTCATTTTCATTTTCTGACTTGTGGTTTAATTTCGTTC
1 ATTTTCTGACTTATGATTTAATCTCT-ATCATTTTCA-TTTCTGACTGGTGATTTAATGAAGTTC
* *
11275712 ATTTTT
64 ATTATC
* * *
11275718 ATTTCTCTGACTTGTGATTTATTCTCGATCATTTTTCATTT
1 ATTT-TCTGACTTATGATTTAATCTCTATCA-TTTTCATTT
11275759 GTAGAATAGT
Statistics
Matches: 90, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
67 1 0.01
68 31 0.34
69 19 0.21
70 10 0.11
71 23 0.26
72 6 0.07
ACGTcount: A:0.20, C:0.14, G:0.12, T:0.54
Consensus pattern (69 bp):
ATTTTCTGACTTATGATTTAATCTCTATCATTTTCATTTCTGACTGGTGATTTAATGAAGTTCAT
TATC
Found at i:11277258 original size:41 final size:40
Alignment explanation
Indices: 11277213--11277344 Score: 158
Period size: 41 Copynumber: 3.2 Consensus size: 40
11277203 TTAATCCCAA
*
11277213 TCATTTTCATTTTCTAACACGTGGTTTAATCTCGATCATTT
1 TCATTTTCATTTTCTGAC-CGTGGTTTAATCTCGATCATTT
* *
11277254 TCATTTTCATTTTTCTGACCTGTGGTTTAATCCCGACCATTT
1 TCATTTTCA-TTTTCTGACC-GTGGTTTAATCTCGATCATTT
* * *
11277296 TCATTTTCATTTTTTGACTTGTGGTTTAAT-TGTGATCATTT
1 TCATTTTCATTTTCTGAC-CGTGGTTTAATCT-CGATCATTT
11277337 TCATTTTC
1 TCATTTTC
11277345 TAACTCCTGG
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
41 43 0.54
42 36 0.46
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.52
Consensus pattern (40 bp):
TCATTTTCATTTTCTGACCGTGGTTTAATCTCGATCATTT
Found at i:11277281 original size:42 final size:42
Alignment explanation
Indices: 11277213--11277344 Score: 173
Period size: 42 Copynumber: 3.2 Consensus size: 42
11277203 TTAATCCCAA
*
11277213 TCATTTTCA-TTTTCTAACAC-GTGGTTTAATCTCGATCATTT
1 TCATTTTCATTTTTCTGAC-CTGTGGTTTAATCTCGATCATTT
* *
11277254 TCATTTTCATTTTTCTGACCTGTGGTTTAATCCCGACCATTT
1 TCATTTTCATTTTTCTGACCTGTGGTTTAATCTCGATCATTT
* *
11277296 TCATTTTCATTTTT-TGACTTGTGGTTTAAT-TGTGATCATTT
1 TCATTTTCATTTTTCTGACCTGTGGTTTAATCT-CGATCATTT
11277337 TCATTTTC
1 TCATTTTC
11277345 TAACTCCTGG
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
41 40 0.49
42 41 0.51
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.52
Consensus pattern (42 bp):
TCATTTTCATTTTTCTGACCTGTGGTTTAATCTCGATCATTT
Found at i:11280628 original size:106 final size:106
Alignment explanation
Indices: 11280470--11280671 Score: 293
Period size: 106 Copynumber: 1.9 Consensus size: 106
11280460 ATTTTCATTG
* * *
11280470 TTTTCATTTTCTGACTCATGATTTAACCCCTGTCGCTTTCATTTTCTAACTTGTGATTTAATTTT
1 TTTTCATTTTCTGACCCATGATTTAACCCCTGTCACTTTCATTTTCAAACTTGTGATTTAATTTT
*
11280535 GATAGTTTTTATTTTCTGACTCGTGGTTTAATCCTAATGGC
66 GATAGTTTTGATTTTCTGACTCGTGGTTTAATCCTAATGGC
* *
11280576 TTTT-ATTTTCTGACCCATGATTTAA-TCCTGATCATTTTC-TTTACTCAAACTTGTGATTTAAT
1 TTTTCATTTTCTGACCCATGATTTAACCCCTG-TCACTTTCATTT--TCAAACTTGTGATTTAAT
*
11280638 TTTGATCGTTTTGATTTTCTGACTCGTGGTTTAA
63 TTTGATAGTTTTGATTTTCTGACTCGTGGTTTAA
11280672 CCTTGGTCCT
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
104 7 0.08
105 26 0.30
106 53 0.62
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (106 bp):
TTTTCATTTTCTGACCCATGATTTAACCCCTGTCACTTTCATTTTCAAACTTGTGATTTAATTTT
GATAGTTTTGATTTTCTGACTCGTGGTTTAATCCTAATGGC
Found at i:11282420 original size:139 final size:138
Alignment explanation
Indices: 11282079--11282422 Score: 369
Period size: 139 Copynumber: 2.5 Consensus size: 138
11282069 TAAACCATCG
* *
11282079 ATCATTTTCATTTTTTGACTCGTGGTTTAATCGCAATCATTTTCATTTTTTGAGT-AGTGGTTTA
1 ATCATTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTTTGACTCA-TGGTTTA
* * *
11282143 ATCTTAATTGCTTTCATTTTTGGCTCGTGATTTAATCCTCGTCTTTTTCATTTGCTGACTCGTGA
65 ATCTTAATTGCTTTCATTTTTGCCTCGTAATTTAATCCTCGTCTTTTT-ATTTGCTGACTCGAGA
11282208 TTTAATTGCT
129 TTTAATTGCT
* * *** * * *
11282218 ATCATTTTCATTTTTTGACTCATGATTTAATCCTTTTCGTTTTCATTTTTTGACCCATAGTTTAA
1 ATCATTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTTTGACTCATGGTTTAA
* * *
11282283 TGC-TAGTTGTTTTCATTTTTTGACCT-GTAATTTAATCCT-GATCATTTTT-TTCT-CTTACTC
66 T-CTTAATTGCTTTCA-TTTTTG-CCTCGTAATTTAATCCTCG-TC-TTTTTATT-TGCTGACTC
11282343 GAGATTTAATT-CT
125 GAGATTTAATTGCT
* * * * *
11282356 AGTCGTTTTCATTTTTTGACTTGTGGTTTAATCCCAGTCATTTTGATTTTTTGATTCATGGTTTA
1 A-TCATTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTTTGACTCATGGTTTA
11282421 AT
65 AT
11282423 TCCTGTCATT
Statistics
Matches: 169, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
138 3 0.02
139 136 0.80
140 23 0.14
141 7 0.04
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (138 bp):
ATCATTTTCATTTTTTGACTCGTGGTTTAATCCCAATCATTTTCATTTTTTGACTCATGGTTTAA
TCTTAATTGCTTTCATTTTTGCCTCGTAATTTAATCCTCGTCTTTTTATTTGCTGACTCGAGATT
TAATTGCT
Found at i:11282662 original size:101 final size:100
Alignment explanation
Indices: 11282367--11282665 Score: 252
Period size: 101 Copynumber: 2.9 Consensus size: 100
11282357 GTCGTTTTCA
* * * * * *
11282367 TTTTTTGACTTGTGGTTTAATCCCAGTCATTTTGATTTTTTGA-TTCATGGTTTAATTCCTGT-C
1 TTTTTTTACTCGTGATTTAATCTCAGTCATTTTCATTTTTTGACTT-GT-GTTTAA-T-CTGTGC
* * *
11282430 AT-TTTTCATTTTCTGACTCATGGTTTAACCTCAATCATTT
62 -TGTTTTCATTTTCTAACTCGTGGTTTAACCT-GATCATTT
* * **
11282470 TCATTTTTTGACTCGT-AGTTTAAT-TCTAATCATTTCCATTTTTTGACCCGTGATTTAATCT-T
1 T--TTTTTT-ACTCGTGA-TTTAATCTC-AGTCATTTTCATTTTTTGACTTGTG-TTTAATCTGT
* * *
11282532 GGTTGTTTTCATTTTCTCACTCGTAGTTTAATCCTGATCA-TT
60 -GCTGTTTTCATTTTCTAACTCGTGGTTTAA-CCTGATCATTT
11282574 TTTTTTTACTCGTGATTTAATCTCAGTCATTTTCATTTTTTGACTTGTAGTTTAATCTGTGCTGT
1 TTTTTTTACTCGTGATTTAATCTCAGTCATTTTCATTTTTTGACTTGT-GTTTAATCTGTGCTGT
* *
11282639 TTTCATTTCCTAACTGGTGGTTTAACC
65 TTTCATTTTCTAACTCGTGGTTTAACC
11282666 CTGGTTGTTT
Statistics
Matches: 157, Mismatches: 24, Indels: 33
0.73 0.11 0.15
Matches are distributed among these distances:
100 2 0.01
101 65 0.41
102 11 0.07
103 2 0.01
104 6 0.04
105 35 0.22
106 36 0.23
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (100 bp):
TTTTTTTACTCGTGATTTAATCTCAGTCATTTTCATTTTTTGACTTGTGTTTAATCTGTGCTGTT
TTCATTTTCTAACTCGTGGTTTAACCTGATCATTT
Found at i:11282902 original size:139 final size:138
Alignment explanation
Indices: 11282710--11283273 Score: 429
Period size: 139 Copynumber: 4.0 Consensus size: 138
11282700 TGACTTATGT
* * *
11282710 TTTAATCTCGA-TCATTTTCATTTTTTTGACTTGTGATTTAATT-TTGATCATTTTTAGTTTTTG
1 TTTAATCT-GAGTCATTTCCA-TTTTTTGACTTGTGATTTAATTCCT-ATCATTTTCA-TTTTTG
* *
11282773 ACTCGTGGTTTAATTTCAAT-TTTTTCATTTTTTGACCCATGGTTTAATTCCT-GTCATTTTCAT
62 ACTCGTGGTTTAATTCCAATCATTTTCATTTTTTGA-CCATGGTTTAA-TCCTAGTCATTTTCAT
*
11282836 TCGCTGACTCATGA
125 TCGCTGACTCAAGA
* * *
11282850 TTTAACTCT-AGTCGTTTCCATTTTCTGACTCGTGATTTAATTCCTATCATTTTCATATTTTGAC
1 TTTAA-TCTGAGTCATTTCCATTTTTTGACTTGTGATTTAATTCCTATCATTTTCAT-TTTTGAC
* * * * *
11282914 TCGTAGTTTAATCCCAGTCGTTTTCATTTTTTGACC-TGTGTTTAATCCTAGTCA-TTTCTTTTC
64 TCGTGGTTTAATTCCAATCATTTTCATTTTTTGACCATG-GTTTAATCCTAGTCATTTTC-ATTC
*
11282977 TCTGACTCAAGA
127 GCTGACTCAAGA
* * * * * * *
11282989 TTTAATTTGGGTCATTTTCATTTTTTGACTTGTGATTTAATCCCGATCATTTTGATTTTCTGATT
1 TTTAATCTGAGTCATTTCCATTTTTTGACTTGTGATTTAATTCCTATCATTTTCATTTT-TGACT
* * * * ***
11283054 CATGGTTTAATTCCTATCATTTTCATTTTTTTACCATGGTTTAA-CCTCGATCATTTTCATTTTT
65 CGTGGTTTAATTCCAATCATTTTCATTTTTTGACCATGGTTTAATCCTAG-TCATTTTCATTCGC
*
11283118 TGACTCGTAG-
129 TGACTC-AAGA
* * * * *
11283128 TTTAATCCTGA-TCATTTTCATTTTCTGACTTGT-AGTTTAATT-TTGGTCATTTTCATTTTCGA
1 TTTAAT-CTGAGTCATTTCCATTTTTTGACTTGTGA-TTTAATTCCT-ATCATTTTCATTTTTG-
** * ** * *
11283190 ACTTATGGTTTAA-TCCTGATTGTTTTTCATTTTTTGACTCATGATTTAGTCTCTA-TCATTTTC
62 ACTCGTGGTTTAATTCC--AATCATTTTCATTTTTTGAC-CATGGTTTAATC-CTAGTCATTTTC
* *
11283253 ATTTC-TTGACTCATGA
123 A-TTCGCTGACTCAAGA
11283269 TTTAA
1 TTTAA
11283274 ACTTGGTTGT
Statistics
Matches: 341, Mismatches: 58, Indels: 49
0.76 0.13 0.11
Matches are distributed among these distances:
138 25 0.07
139 226 0.66
140 53 0.16
141 32 0.09
142 3 0.01
143 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.52
Consensus pattern (138 bp):
TTTAATCTGAGTCATTTCCATTTTTTGACTTGTGATTTAATTCCTATCATTTTCATTTTTGACTC
GTGGTTTAATTCCAATCATTTTCATTTTTTGACCATGGTTTAATCCTAGTCATTTTCATTCGCTG
ACTCAAGA
Found at i:11282958 original size:104 final size:103
Alignment explanation
Indices: 11282689--11283256 Score: 335
Period size: 104 Copynumber: 5.4 Consensus size: 103
11282679 CCACCGACCG
* * *
11282689 TTTTCATTTTTTGACT--TATGTTTTAATCTCGATCATTTTCATTTTTTTGACTTGTGATTTAAT
1 TTTTCATTTTTTGACTCGTA-G-TTTAATCCCGATCATTTTCA-TTTTCTGACATGTG-TTTAAT
* * * * * * * *
11282752 -TTTGATCATTTTTAGTTTT-TGACTCGTGGTTTAATTTCAAT-T
62 CCTAG-TCA-TTTCA-TTTTCTGACTCATGATTTAATTCCTATCA
* * * * ** *
11282794 TTTTCATTTTTTGACCCATGGTTTAATTCCTG-TCATTTTCATTCGCTGACTCATG-ATTTAA-C
1 TTTTCATTTTTTGACTCGTAGTTTAA-TCCCGATCATTTTCATTTTCTGA--CATGTGTTTAATC
* *
11282856 TCTAGTCGTTTCCATTTTCTGACTCGTGATTTAATTCCTATCA
63 -CTAGTCATTT-CATTTTCTGACTCATGATTTAATTCCTATCA
* * * *
11282899 TTTTCATATTTTGACTCGTAGTTTAATCCC-AGTCGTTTTCATTTTTTGACCTGTGTTTAATCCT
1 TTTTCATTTTTTGACTCGTAGTTTAATCCCGA-TCATTTTCATTTTCTGACATGTGTTTAATCCT
* * ****
11282963 AGTCATTTCTTTTCTCTGACTCAAGATTTAATTTGGGTCA
65 AGTCATTTCATTT-TCTGACTCATGATTTAATTCCTATCA
* *
11283003 TTTTCATTTTTTGACTTGT-GATTTAATCCCGATCATTTTGATTTTCTGATTCATG-GTTTAATT
1 TTTTCATTTTTTGACTCGTAG-TTTAATCCCGATCATTTTCATTTTCTGA--CATGTGTTTAA-T
* * *
11283066 CCTA-TCATTTTCATTTTTTTAC-CATGGTTTAA--CCTCGATCA
62 CCTAGTCA-TTTCATTTTCTGACTCATGATTTAATTCCT--ATCA
* * **
11283107 TTTTCATTTTTTGACTCGTAGTTTAATCCTGATCATTTTCATTTTCTGACTTGTAGTTTAATTTT
1 TTTTCATTTTTTGACTCGTAGTTTAATCCCGATCATTTTCATTTTCTGACATGT-GTTTAATCCT
* * * **
11283172 GGTCATTTTCATTTTC-GAACTTATGGTTTAA-TCCTGATTGT
65 AGTCA-TTTCATTTTCTG-ACTCATGATTTAATTCCT-A-TCA
* * * *
11283213 TTTTCATTTTTTGACTCAT-GATTTAGTCTCTATCATTTTCATTT
1 TTTTCATTTTTTGACTCGTAG-TTTAATCCCGATCATTTTCATTT
11283257 CTTGACTCAT
Statistics
Matches: 363, Mismatches: 68, Indels: 63
0.73 0.14 0.13
Matches are distributed among these distances:
102 3 0.01
103 17 0.05
104 185 0.51
105 94 0.26
106 63 0.17
107 1 0.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (103 bp):
TTTTCATTTTTTGACTCGTAGTTTAATCCCGATCATTTTCATTTTCTGACATGTGTTTAATCCTA
GTCATTTCATTTTCTGACTCATGATTTAATTCCTATCA
Found at i:11283593 original size:66 final size:67
Alignment explanation
Indices: 11283473--11283598 Score: 166
Period size: 66 Copynumber: 1.9 Consensus size: 67
11283463 CTATCTTTTC
* * * * * *
11283473 CATTTTTTGACTCATGGTTTTAATTCCCGTGATTTTCATTCTCTGACTCGTGATTTAATTCCAGT
1 CATTTTCTAACTCATGGATTTAATTCCCGTCATTTTCATTCTCTAACTCATGATTTAATTCCAGT
11283538 TT
66 TT
*
11283540 CATTTTCTAACTCAT-GATTTAA-TCCCTGTCATTTTCATTTTCTAACTCATGATTTAATT
1 CATTTTCTAACTCATGGATTTAATTCCC-GTCATTTTCATTCTCTAACTCATGATTTAATT
11283599 TTGATCATTT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
65 4 0.08
66 34 0.67
67 13 0.25
ACGTcount: A:0.21, C:0.20, G:0.10, T:0.49
Consensus pattern (67 bp):
CATTTTCTAACTCATGGATTTAATTCCCGTCATTTTCATTCTCTAACTCATGATTTAATTCCAGT
TT
Found at i:11283877 original size:142 final size:140
Alignment explanation
Indices: 11283592--11283946 Score: 407
Period size: 142 Copynumber: 2.5 Consensus size: 140
11283582 TAACTCATGA
* * * * * *
11283592 TTTAATTTTGATCATTTTCATTTTTTGACTCGTGGTTTAATCCTAGT-TGTTTTCATTTTTTGAC
1 TTTAATCTCGATCATTTTCATTTTCTAACTCATGGTTTAATTCTAGTCT-TTTTCATTTTTTGAC
* * * *
11283656 CCATGATTTAACCCATGTCATTTCTTTTCTTTGACTCGAGATTTAATTTCAGTCATTTTTAGTTT
65 TCGTGATTTAACCCATGCCATTTCTTTTCTTTGACTCGAGATTTAATTTCAGTCATTTTGAGTTT
* *
11283721 TTGACTGGTGG
130 TTGACTGCTAG
*
11283732 TTTAATCTCGATCATTTTGATTTTCTAACAT-ATGGTTTAATTCTAGTCATTTTTCATTTTTTGA
1 TTTAATCTCGATCATTTTCATTTTCTAAC-TCATGGTTTAATTCTAGTC-TTTTTCATTTTTTGA
* * * ** *
11283796 CTCGTGGTTTAATCCCA-GCCATTATCTTTTCTCTT-ATTCGTGATTTAATTTTGGTTATTTTGA
64 CTCGTGATTTAA-CCCATGCCATT-TCTTTTCT-TTGACTCGAGATTTAATTTCAGTCATTTTGA
* *
11283859 TTTTTTGACTTCTAG
126 GTTTTTGACTGCTAG
* *
11283874 TTTAATCTCGATCATTTTCATTTTCTAACTCATGGTTTAA-TCTA-TCGTTTTCATTTTCTGACT
1 TTTAATCTCGATCATTTTCATTTTCTAACTCATGGTTTAATTCTAGTCTTTTTCATTTTTTGACT
11283937 CGTGATTTAA
66 CGTGATTTAA
11283947 ATCTAGTAGT
Statistics
Matches: 183, Mismatches: 25, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
139 24 0.13
140 40 0.22
141 34 0.19
142 83 0.45
143 2 0.01
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.52
Consensus pattern (140 bp):
TTTAATCTCGATCATTTTCATTTTCTAACTCATGGTTTAATTCTAGTCTTTTTCATTTTTTGACT
CGTGATTTAACCCATGCCATTTCTTTTCTTTGACTCGAGATTTAATTTCAGTCATTTTGAGTTTT
TGACTGCTAG
Found at i:11286635 original size:69 final size:69
Alignment explanation
Indices: 11286548--11286738 Score: 210
Period size: 69 Copynumber: 2.8 Consensus size: 69
11286538 TCCTAGTCAT
* *
11286548 TTTTCTTTTTTTGACTGGTGGTTTAATCTTGA-CCATTTTTATTTTTTGACTCAAGGTTTAATTC
1 TTTTCATTTTTTGACTGGTGGTTTAATCTTGAGCCATTTTCATTTTTTGACTCAAGGTTTAATT-
11286612 TAAT-
65 TAATC
* * * * *
11286616 TATTTCATTTTTTGACTGGTGGTTAAATC-TGAGTCGTTTTCATTTTCTGACTC-ATGTTTAATT
1 T-TTTCATTTTTTGACTGGTGGTTTAATCTTGAGCCATTTTCATTTTTTGACTCAAGGTTTAATT
**
11286679 TGGTC
65 TAATC
* * * *
11286684 GTTTTCATTTTTTAACTAGTGGTTTAATCTTGATCAATTTTCATTTTTTGACTCA
1 -TTTTCATTTTTTGACTGGTGGTTTAATCTTGAGCCATTTTCATTTTTTGACTCA
11286739 TGATTGAATC
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
67 2 0.02
68 37 0.37
69 61 0.61
ACGTcount: A:0.19, C:0.13, G:0.14, T:0.54
Consensus pattern (69 bp):
TTTTCATTTTTTGACTGGTGGTTTAATCTTGAGCCATTTTCATTTTTTGACTCAAGGTTTAATTT
AATC
Found at i:11286769 original size:174 final size:175
Alignment explanation
Indices: 11286583--11286918 Score: 432
Period size: 174 Copynumber: 1.9 Consensus size: 175
11286573 ATCTTGACCA
* * * * *
11286583 TTTTTATTTTTTGACTCAAGGTTTAATTCTAAT-TATTTCATTTTTTGACTGGTGGTTAAAT-CT
1 TTTTCATTTTTTGACTCAAGATTTAATCCCAATCT-TTTCATTTTTTGACTCGTGGTTAAATCCT
* * *
11286646 GAGTCGTTTTCATTTTCTGACTCATG-TTTAATT-TGGTCGTTTTCATTT-TTTAACT-AGTGGT
65 -AGTCGTTATCATTTTCTAACTCATGATTTAATTCTGGTCGTTTTCATTTGTTT-ACTCA-TGAT
*
11286707 TTAATCTTGATCAATTTTCATTTTTTGACTCATGATTGAATCTCAATTGG
127 TTAATCCTGATC-ATTTTCATTTTTTGACTCATGATTGAATCTCAATTGG
** *
11286757 TTTTCATTTTTTGACTCTTGATTTAATCCCAATCTTTTCATTTTTTGACTCGTGGTTTAATCCTA
1 TTTTCATTTTTTGACTCAAGATTTAATCCCAATCTTTTCATTTTTTGACTCGTGGTTAAATCCTA
* **
11286822 GTTGTTATCATTTTCTAACTTGTGATTTAATTCTGGTCGTTTTCATTTGTTTACTCATGATTTAA
66 GTCGTTATCATTTTCTAACTCATGATTTAATTCTGGTCGTTTTCATTTGTTTACTCATGATTTAA
* *
11286887 TCCTGGTCGTTTTCATTTTTTGACTCATGATT
131 TCCTGATCATTTTCATTTTTTGACTCATGATT
11286919 TAATTCACTT
Statistics
Matches: 139, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
174 71 0.51
175 33 0.24
176 31 0.22
177 4 0.03
ACGTcount: A:0.20, C:0.14, G:0.13, T:0.53
Consensus pattern (175 bp):
TTTTCATTTTTTGACTCAAGATTTAATCCCAATCTTTTCATTTTTTGACTCGTGGTTAAATCCTA
GTCGTTATCATTTTCTAACTCATGATTTAATTCTGGTCGTTTTCATTTGTTTACTCATGATTTAA
TCCTGATCATTTTCATTTTTTGACTCATGATTGAATCTCAATTGG
Found at i:11287271 original size:100 final size:100
Alignment explanation
Indices: 11287152--11287335 Score: 237
Period size: 100 Copynumber: 1.8 Consensus size: 100
11287142 TTGATTTTTA
* * * * * * *
11287152 AACTCATGGTATAATCTCGATCGTTTTGATTTTTTGACTTATAGTTT-AATCCTGATCATTTTCA
1 AACTCATGATATAATCTCGATCATTTTCATTTCTTGACTCATAGTTTAAATCC-AATCATATTCA
11287216 TTTTGTT-ACTCATGGTTTAATCCCAGTTCATTTTCT
65 TTTT-TTGACTCATGGTTTAATCCCAGTTCATTTTCT
* * **
11287252 AACTCATGATTTAATCTCGATCATTTTCATTTCTTGACTCATGGTTTAAATCCAATTGTATTCAT
1 AACTCATGATATAATCTCGATCATTTTCATTTCTTGACTCATAGTTTAAATCCAATCATATTCAT
11287317 TTTTTGACTCATGGTTTAA
66 TTTTTGACTCATGGTTTAA
11287336 CCTGATCATT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
99 2 0.03
100 64 0.90
101 5 0.07
ACGTcount: A:0.24, C:0.17, G:0.11, T:0.48
Consensus pattern (100 bp):
AACTCATGATATAATCTCGATCATTTTCATTTCTTGACTCATAGTTTAAATCCAATCATATTCAT
TTTTTGACTCATGGTTTAATCCCAGTTCATTTTCT
Found at i:11287401 original size:69 final size:68
Alignment explanation
Indices: 11287195--11287404 Score: 205
Period size: 69 Copynumber: 3.1 Consensus size: 68
11287185 TTGACTTATA
* * *
11287195 GTTTAATCCTGATCATTTTCATTTTGTTACTCATGGTTTAATCC---CA-GTTCATTTTCTAACT
1 GTTTAA-CCTGATCATTTTCATTTTCTAACTCATGGTTTAATCCAATCATATTCATTTTCTAACT
11287256 CATG
65 CATG
* * * ** * *
11287260 ATTTAATCTCGATCATTTTCA-TTTCTTGACTCATGGTTTAAATCCAATTGTATTCATTTTTTGA
1 GTTTAACCT-GATCATTTTCATTTTC-TAACTCATGGTTT-AATCCAATCATATTCATTTTCTAA
11287324 CTCATG
63 CTCATG
* * *
11287330 GTTTAACCTGATCATTTTCATTTTCTAACTTATAGTTTAATCCTAATCATTTTCATTTTCTAACT
1 GTTTAACCTGATCATTTTCATTTTCTAACTCATGGTTTAATCC-AATCATATTCATTTTCTAACT
**
11287395 TGTG
65 CATG
11287399 GTTTAA
1 GTTTAA
11287405 TTCTTATCGT
Statistics
Matches: 115, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
64 5 0.04
65 28 0.24
66 5 0.04
68 5 0.04
69 45 0.39
70 27 0.23
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.49
Consensus pattern (68 bp):
GTTTAACCTGATCATTTTCATTTTCTAACTCATGGTTTAATCCAATCATATTCATTTTCTAACTC
ATG
Found at i:11287755 original size:209 final size:206
Alignment explanation
Indices: 11287259--11287772 Score: 514
Period size: 209 Copynumber: 2.5 Consensus size: 206
11287249 TCTAACTCAT
* * * *
11287259 GATTTAA-TCTCGATCATTTTCATTTCTTGACTCATGGTTTAAATCCAATTGTATTCATTTTTTG
1 GATTTAATTCT-GGTCATTTTCATTTTTTGACTCATGGTTT-AATCCTATTGTTTTCATTTTTTG
** *
11287323 ACTCATGGTTTAACCTGATCATTTTCATTTTCTAACTTATAGTTTAATCCTAATCATTTTCATTT
64 ACTCATGGTTTAATTTCATCATTTTCATTTTCTAACTTATAGTTTAATCCTAATCATTTTCATTT
* * * * * * ** *
11287388 TCTAACTTGTGGTTTAATTCTTATCGTTTTCAATTTTTGTTTCGTGATTTAATTCACGTTGTTTT
129 CCTAACCTATGGTTTAATCCTGATCGTTATC-ATTTTTGACTCGTGATTTAATCCACGTTGTTTT
* * *
11287453 CATTGTCTGACTTGT
193 -ATTCTCTAACTTGA
* * * * * ** *
11287468 GATTTTATTTTAGTCATTTTCATTTTTTGACTTATGATTTAATGCCTATCATTTTCATTTTCTGA
1 GATTTAATTCTGGTCATTTTCATTTTTTGACTCATGGTTTAAT-CCTATTGTTTTCATTTTTTGA
** * * * * ** *
11287533 CTTGTGATTTAATTTCAGTCATTTTCATTTTCTGA-TTAGTGGTTTAATCTTGCTCATTTTTATT
65 CTCATGGTTTAATTTCA-TCATTTTCATTTTCTAACTTA-TAGTTTAATCCTAATCATTTTCATT
*
11287597 TCCTAACCTATGGTTTAATCCTGATCGTTATC-TTTTCTGACTCGTGATTTAATCCAGGTTGTAT
128 TCCTAACCTATGGTTTAATCCTGATCGTTATCATTTT-TGACTCGTGATTTAATCCACGTTGT-T
11287661 ATT-TTCTCTAACTTGA
191 -TTATTCTCTAACTTGA
* *
11287677 GATTTAATTCTGGTCATTTTCATTTTTTGACTCGTGGTTTAATCTCTATTGTTTTGATTTTTTGA
1 GATTTAATTCTGGTCATTTTCATTTTTTGACTCATGGTTTAATC-CTATTGTTTTCATTTTTTGA
* * *
11287742 CTCACGGTTTAATTTTGATCATTTTTATTTT
65 CTCATGGTTTAA-TTTCATCATTTTCATTTT
11287773 TTGACACATG
Statistics
Matches: 243, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
208 8 0.03
209 164 0.67
210 69 0.28
211 2 0.01
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (206 bp):
GATTTAATTCTGGTCATTTTCATTTTTTGACTCATGGTTTAATCCTATTGTTTTCATTTTTTGAC
TCATGGTTTAATTTCATCATTTTCATTTTCTAACTTATAGTTTAATCCTAATCATTTTCATTTCC
TAACCTATGGTTTAATCCTGATCGTTATCATTTTTGACTCGTGATTTAATCCACGTTGTTTTATT
CTCTAACTTGA
Found at i:11289023 original size:29 final size:30
Alignment explanation
Indices: 11288962--11289024 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
11288952 ATCATTTTCA
* **
11288962 TTTTTTGACTTATGGATTAATCCCGCTCAT
1 TTTTTTGACTCATGGATTAATCCCAATCAT
*
11288992 TTTTTTGACTCATGGTTTAATCCCAATC-T
1 TTTTTTGACTCATGGATTAATCCCAATCAT
11289021 TTTT
1 TTTT
11289025 CATTTTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.19, C:0.19, G:0.11, T:0.51
Consensus pattern (30 bp):
TTTTTTGACTCATGGATTAATCCCAATCAT
Found at i:11289057 original size:65 final size:65
Alignment explanation
Indices: 11288932--11289060 Score: 168
Period size: 65 Copynumber: 2.0 Consensus size: 65
11288922 ATTCATTGTC
* * * * **
11288932 TGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTTATGGATTAATCCCGCTCATTTTTT
1 TGACTCATGATTTAATCCCAATCATTTTCATTTTTTAACTCATGGATTAATCCCAATCATTTTTT
* * * *
11288997 TGACTCATGGTTTAATCCCAATCTTTTTCATTTTTTAACTCATGGTTTAATCCTAATCATTTTT
1 TGACTCATGATTTAATCCCAATCATTTTCATTTTTTAACTCATGGATTAATCCCAATCATTTTT
11289061 CTTTTTATAA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 54 1.00
ACGTcount: A:0.22, C:0.19, G:0.09, T:0.50
Consensus pattern (65 bp):
TGACTCATGATTTAATCCCAATCATTTTCATTTTTTAACTCATGGATTAATCCCAATCATTTTTT
Found at i:11289167 original size:206 final size:206
Alignment explanation
Indices: 11288798--11289177 Score: 444
Period size: 206 Copynumber: 1.8 Consensus size: 206
11288788 TTGTAATTGG
* * * *
11288798 TGGTTTAATCCCAGTCATTTTCATTTTCTGACTTATGGCTTAATCCTGATAATTTTTCATTTTTT
1 TGGTTTAATCCCAATCATTTTCATTTTCTAACTCATGGCTTAATCCTAATAATTTTTCATTTTTT
* * ** * * **
11288863 GACTTGTGATTTAATCCCAGTTGTTTTCATTTCTTTGCTCGTGATTTAAACTCGATTGTATTCAT
66 AACTAGTGATTTAATCCCAGTCATTTTCATTTCTTTGCTAGTGATTTAAACTCCATCATATTCAT
* *
11288928 TGTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTTATGGATTAATCCCGCTCATT
131 TGTCTAACTCATGATTTAATCTCGATCATTTTCATCTTTTGACTTATGGATTAATCCCGCTCATT
11288993 TTTTTGACTCA
196 TTTTTGACTCA
* * * *
11289004 TGGTTTAATCCCAATCTTTTTCATTTTTTAACTCATGGTTTAATCCTAATCATTTTTC-TTTTTA
1 TGGTTTAATCCCAATCATTTTCATTTTCTAACTCATGGCTTAATCCTAATAATTTTTCATTTTT-
* * * * *
11289068 TAACTAGTGGTTTAAT-CCTGATCATTTTCATTT-TTTGACTATTGATTTAATCTCCATCATTTT
65 TAACTAGTGATTTAATCCCAG-TCATTTTCATTTCTTTG-CTAGTGATTTAAACTCCATCATATT
* ** * *
11289131 CATTTTCTAACTTGTGGTTTAATACT-GATTATTTTCATCTTTTGACT
128 CATTGTCTAACTCATGATTTAAT-CTCGATCATTTTCATCTTTTGACT
11289178 CGTGGTTTAA
Statistics
Matches: 142, Mismatches: 28, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
205 12 0.08
206 128 0.90
207 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (206 bp):
TGGTTTAATCCCAATCATTTTCATTTTCTAACTCATGGCTTAATCCTAATAATTTTTCATTTTTT
AACTAGTGATTTAATCCCAGTCATTTTCATTTCTTTGCTAGTGATTTAAACTCCATCATATTCAT
TGTCTAACTCATGATTTAATCTCGATCATTTTCATCTTTTGACTTATGGATTAATCCCGCTCATT
TTTTTGACTCA
Found at i:11290514 original size:32 final size:32
Alignment explanation
Indices: 11290477--11290542 Score: 78
Period size: 32 Copynumber: 2.1 Consensus size: 32
11290467 GTCGTTTTGA
* * *
11290477 TTTTCTAACTCGTGATTTAATTCTAGTCATTT
1 TTTTCTAACTCATGATTTAATCCCAGTCATTT
* * *
11290509 TTTTCTCATTCATGGTTTAATCCCAGTCATTT
1 TTTTCTAACTCATGATTTAATCCCAGTCATTT
11290541 TT
1 TT
11290543 CATTTTCTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.20, C:0.18, G:0.09, T:0.53
Consensus pattern (32 bp):
TTTTCTAACTCATGATTTAATCCCAGTCATTT
Found at i:11290686 original size:104 final size:104
Alignment explanation
Indices: 11290518--11290756 Score: 243
Period size: 104 Copynumber: 2.3 Consensus size: 104
11290508 TTTTTCTCAT
* *** * *
11290518 TCATGGTTTAATC-CCAGTCATTTTTCATTTTCTAAATTGTGATTTAAACCCTATTGTTTACATT
1 TCATGGTTTAATCTCGA-TCA-TTTTCA-TTTCTGGCTTGTGATTTAAACCCAATCGTTTACATT
* *
11290582 TCTTGAT-TCATGATTTAAATCCAGTCGTATTCATTT-TCTGAC
63 TCTTG-TCTCACGATTTAAATCCAGTCGTATTCATTTCT-TAAC
* * * * * *
11290624 TCGTGGTTTAATC-CTGATCGTTTTCATTTCTGGCTTGTGGTTTAATCCCAATCGTTTTCATTTT
1 TCATGGTTTAATCTC-GATCATTTTCATTTCTGGCTTGTGATTTAAACCCAATCGTTTACATTTC
* * *
11290688 TTGTCTCACGATTTAATTTCAGTCGTTTTCATTTCTTAAC
65 TTGTCTCACGATTTAAATCCAGTCGTATTCATTTCTTAAC
11290728 TCATGGTTTAATCTCGATCATTTTCATTT
1 TCATGGTTTAATCTCGATCATTTTCATTT
11290757 TTGACTCGAT
Statistics
Matches: 110, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
103 1 0.01
104 85 0.77
105 8 0.07
106 15 0.14
107 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (104 bp):
TCATGGTTTAATCTCGATCATTTTCATTTCTGGCTTGTGATTTAAACCCAATCGTTTACATTTCT
TGTCTCACGATTTAAATCCAGTCGTATTCATTTCTTAAC
Found at i:11290777 original size:104 final size:102
Alignment explanation
Indices: 11290509--11290784 Score: 229
Period size: 104 Copynumber: 2.6 Consensus size: 102
11290499 CTAGTCATTT
* * * * * * * *
11290509 TTTTCTCATTCATGGTTTAATCC-CAGTCATTTTTCATTTTCTAAATTGTGATTTAAACCCTATT
1 TTTTCTAACTCATGGTTTAATCCTGA-TCA-TTTTCA-TTTCTGACTCGTG-TTTAATCCC-ATC
* * *
11290573 GTTTACATTTCTTGAT-TCATGATTTAAATCCAGTCGTATTCA
61 GTTTTCATTTTTTG-TCTCACGATTTAAATCCAGTCGTATTCA
* * * * *
11290615 TTTTCTGACTCGTGGTTTAATCCTGATCGTTTTCATTTCTGGCTTGTGGTTTAATCCCAATCGTT
1 TTTTCTAACTCATGGTTTAATCCTGATCATTTTCATTTCTGACTCGT-GTTTAATCCC-ATCGTT
* * *
11290680 TTCATTTTTTGTCTCACGATTTAATTTCAGTCGTTTTCA
64 TTCATTTTTTGTCTCACGATTTAAATCCAGTCGTATTCA
*
11290719 -TTTCTTAACTCATGGTTTAAT-CTCGATCATTTTCATTTTTGACTCGAT-TTTAATTCCCATCG
1 TTTTC-TAACTCATGGTTTAATCCT-GATCATTTTCATTTCTGACTCG-TGTTTAA-TCCCATCG
11290781 TTTT
62 TTTT
11290785 TATTCCCTAG
Statistics
Matches: 140, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
103 20 0.14
104 89 0.64
105 8 0.06
106 22 0.16
107 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.50
Consensus pattern (102 bp):
TTTTCTAACTCATGGTTTAATCCTGATCATTTTCATTTCTGACTCGTGTTTAATCCCATCGTTTT
CATTTTTTGTCTCACGATTTAAATCCAGTCGTATTCA
Found at i:11290799 original size:68 final size:69
Alignment explanation
Indices: 11290661--11290800 Score: 151
Period size: 68 Copynumber: 2.0 Consensus size: 69
11290651 TTCTGGCTTG
* * * * *
11290661 TGGTTTAATCCCAATCGTTTTCATTTTTTGTCTCACGATTTAATTTCAGTCGTTTTCATTTCTTA
1 TGGTTTAATCCCAATCATTTTCATTTTTTGACT-ACGATTTAATTCCAGTCGTTTTCATTCCCTA
11290726 ACTCA
65 ACTCA
* * *
11290731 TGGTTTAATCTCGATCATTTTCA-TTTTTGACT-CGATTTTAATTCCCA-TCGTTTTTATTCCCT
1 TGGTTTAATCCCAATCATTTTCATTTTTTGACTACGA-TTTAATT-CCAGTCGTTTTCATTCCCT
*
11290793 AGCTCA
64 AACTCA
11290799 TG
1 TG
11290801 ATTTTATTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
67 3 0.05
68 26 0.44
69 10 0.17
70 20 0.34
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (69 bp):
TGGTTTAATCCCAATCATTTTCATTTTTTGACTACGATTTAATTCCAGTCGTTTTCATTCCCTAA
CTCA
Found at i:11292677 original size:173 final size:172
Alignment explanation
Indices: 11292454--11292833 Score: 413
Period size: 173 Copynumber: 2.2 Consensus size: 172
11292444 GACTTAATTC
* * * *** * * *
11292454 TGGTAATTTTGATTTTCTGATTCATGATTTAATCTTGGTCGTTCTCATTTTTTTACTCATGGTTT
1 TGGT-ATTTTCATTTTCTGACTCATGGTTTAATCTCAATAGTTCTCATTTTCTAACTCATGGTTT
* * * * * *
11292519 AATCTCGATCATTTT-TTTTCTCACTCACAGTTTAATCTCGATCGTTTTTATTTTTT-AGCTCAT
65 AATCTAGATCATTTTATTTCCTAACTCACAGTTTAATCCCGATC-CTTTCATTTTTTGA-CTCAT
* *
11292582 GGTTTAATCTTGATAATTTTCATTTTCTGACTCATGATTTAATCT
128 GATTTAATCTTAATAATTTTCATTTTCTGACTCATGATTTAATCT
*
11292627 TGGTCATTTTCATTTTCTGACTCATGGTTTAATCTCAATAGTTTTCATTTTCTAACTCATGGTTT
1 TGGT-ATTTTCATTTTCTGACTCATGGTTTAATCTCAATAGTTCTCATTTTCTAACTCATGGTTT
* ** *
11292692 AATCTAGGTCATTTTCATTTCCTAACTCATGGTTTAATCCCGATCCTTTCATTTTTTGACTCGTG
65 AATCTAGATCATTTT-ATTTCCTAACTCACAGTTTAATCCCGATCCTTTCATTTTTTGACTCATG
* * ** * *
11292757 ATTTAATTTTAATAGTTTTCATTTTCTGACTTGTGGTTTAATTT
129 ATTTAATCTTAATAATTTTCATTTTCTGACTCATGATTTAATCT
* * **
11292801 TGGTAATTTCATTTTTTGACTCACAGTTTAATC
1 TGGTATTTTCATTTTCTGACTCATGGTTTAATC
11292834 CCGATCATTT
Statistics
Matches: 171, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
173 92 0.54
174 55 0.32
175 24 0.14
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (172 bp):
TGGTATTTTCATTTTCTGACTCATGGTTTAATCTCAATAGTTCTCATTTTCTAACTCATGGTTTA
ATCTAGATCATTTTATTTCCTAACTCACAGTTTAATCCCGATCCTTTCATTTTTTGACTCATGAT
TTAATCTTAATAATTTTCATTTTCTGACTCATGATTTAATCT
Found at i:11294322 original size:66 final size:66
Alignment explanation
Indices: 11294206--11294712 Score: 251
Period size: 66 Copynumber: 7.3 Consensus size: 66
11294196 GTTGTTTTCA
* * * * * * * *
11294206 TTTTTTGACTCGTGTTTTTATCCCGATCATTTTCA-TTTCATAACTTGTGGTTTAATCTCGATAA
1 TTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTC-TGACTCGTGGTTTAATCTCGATAA
11294270 TT
65 TT
*
11294272 TTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCTGACTCGTGGTTTAATCCCGATCAT
1 TTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCTGACTCGTGGTTTAATCTCGAT-A-
*
11294337 TTTTCT
64 --AT-T
* * * * * *
11294343 TTTTTTGACTCA-TGATTTAATCCTAGTCGTTTTCTGATCATTTTCATTTCCTAACTTGTGGTTT
1 TTTTTTGACT-AGTGGTTT-A----A-TC----TC-AATCATTTTTATTTTCTGACTCGTGGTTT
11294407 AATCTCGATAATT
54 AATCTCGATAATT
* *
11294420 TTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCTGACTCGTGGTTTAATCCCAATCAT
1 TTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCTGACTCGTGGTTTAATCTCGAT-A-
*
11294485 TTTTCT
64 --AT-T
* * * * * * *
11294491 TTTTTTGACTCA-TGATTTAATC-CTAGTCGTTTTCA-TTTCTTGACTCATGATTTAAACTC-AG
1 TTTTTTGACT-AGTGGTTTAATCTC-AATCATTTTTATTTTC-TGACTCGTGGTTTAATCTCGA-
11294552 TCACATT
62 T-A-ATT
* * * * * * * *
11294559 CATTTTTTGACTTGTGATTTAATCTTAGTCATTTTTATTTTTTGACTTGTGGTTTAATCTCGCTT
1 --TTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCTGACTCGTGGTTTAATCTCGATA
* *
11294624 GTG
64 ATT
* * * * *
11294627 TTTTTT-ACTCA-TGGTTTAATCTCAGTCTTTTTTATTTTTTTGACTCATGGTTTAATC-CCAGT
1 TTTTTTGACT-AGTGGTTTAATCTCAATCATTTTTA-TTTTCTGACTCGTGGTTTAATCTCGA-T
*
11294689 CATT
63 AATT
*
11294693 TTTTTT-ACTGGTGGTTTAAT
1 TTTTTTGACTAGTGGTTTAAT
11294713 ACTGGTCTTT
Statistics
Matches: 341, Mismatches: 62, Indels: 76
0.71 0.13 0.16
Matches are distributed among these distances:
65 24 0.07
66 125 0.37
67 8 0.02
68 2 0.01
69 1 0.00
70 53 0.16
71 67 0.20
72 4 0.01
76 3 0.01
77 18 0.05
78 1 0.00
81 3 0.01
82 32 0.09
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.52
Consensus pattern (66 bp):
TTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCTGACTCGTGGTTTAATCTCGATAAT
T
Found at i:11294404 original size:148 final size:148
Alignment explanation
Indices: 11294230--11294524 Score: 572
Period size: 148 Copynumber: 2.0 Consensus size: 148
11294220 TTTTTATCCC
11294230 GATCATTTTCATTTCATAACTTGTGGTTTAATCTCGATAATTTTTTTTGACTAGTGGTTTAATCT
1 GATCATTTTCATTTCATAACTTGTGGTTTAATCTCGATAATTTTTTTTGACTAGTGGTTTAATCT
*
11294295 CAATCATTTTTATTTTCTGACTCGTGGTTTAATCCCGATCATTTTTCTTTTTTTGACTCATGATT
66 CAATCATTTTTATTTTCTGACTCGTGGTTTAATCCCAATCATTTTTCTTTTTTTGACTCATGATT
11294360 TAATCCTAGTCGTTTTCT
131 TAATCCTAGTCGTTTTCT
*
11294378 GATCATTTTCATTTCCTAACTTGTGGTTTAATCTCGATAATTTTTTTTGACTAGTGGTTTAATCT
1 GATCATTTTCATTTCATAACTTGTGGTTTAATCTCGATAATTTTTTTTGACTAGTGGTTTAATCT
11294443 CAATCATTTTTATTTTCTGACTCGTGGTTTAATCCCAATCATTTTTCTTTTTTTGACTCATGATT
66 CAATCATTTTTATTTTCTGACTCGTGGTTTAATCCCAATCATTTTTCTTTTTTTGACTCATGATT
11294508 TAATCCTAGTCGTTTTC
131 TAATCCTAGTCGTTTTC
11294525 ATTTCTTGAC
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 145 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.51
Consensus pattern (148 bp):
GATCATTTTCATTTCATAACTTGTGGTTTAATCTCGATAATTTTTTTTGACTAGTGGTTTAATCT
CAATCATTTTTATTTTCTGACTCGTGGTTTAATCCCAATCATTTTTCTTTTTTTGACTCATGATT
TAATCCTAGTCGTTTTCT
Found at i:11294793 original size:201 final size:204
Alignment explanation
Indices: 11294396--11294888 Score: 475
Period size: 201 Copynumber: 2.4 Consensus size: 204
11294386 TCATTTCCTA
*
11294396 ACTTGTGGTTTAATCTCGATAATTTTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCT
1 ACTTGTGGTTTAATCTCGATAATGTTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCT
* *
11294461 GACTCGTGGTTTAATCCCAATCATTTTTCTTTTTTTGACTCATGATTTAATCCTAGTCGTTTTCA
66 GACTCATGGTTTAATCCCAATCA---TTCTTTTTTTGACTCATGATTTAATACTAGTCGTTTTCA
*
11294526 TTTCTTGACTCATGATTTAAACTCAGTCACATTCATTTTTTGACTTGTGATTTAATCTTAGTCAT
128 TTTCTTGACTCA-GATTTAAACTCAGTCACATTCATTTTTTGACTTGTGATTTAATCCTAGTCAT
*
11294591 TTTTA-TTTTTTG
192 TTTCATTTTTTTG
* ** * *
11294603 ACTTGTGGTTTAATCTCGCTTGTGTTTTTT-ACTCA-TGGTTTAATCTCAGTCTTTTTTATTTTT
1 ACTTGTGGTTTAATCTCGATAATGTTTTTTGACT-AGTGGTTTAATCTCAATCATTTTTA-TTTT
* * ** * * *
11294666 TTGACTCATGGTTTAATCCCAGTCA-T-TTTTTTT-ACTGGTGGTTTAATACTGGTCTTTTTCAT
64 CTGACTCATGGTTTAATCCCAATCATTCTTTTTTTGACTCATGATTTAATACTAGTCGTTTTCAT
* * ** ** *
11294728 TTTTTGACTGGCA-ATTTAATCTTGGTCATTTTCATTTTTTGAC-TGTTGATTTAATCCTGGTCA
129 TTCTTGACT--CAGATTTAAACTCAGTCACATTCATTTTTTGACTTG-TGATTTAATCCTAGTCA
11294791 TTTTCATTTTTTTG
191 TTTTCATTTTTTTG
** ** * * * *
11294805 ACTCATGGTTTAATAC-CAGTCATTTTCATTTTTTGACTCA-TGGCTTAATCTCGATCATTTTCA
1 ACTTGTGGTTTAAT-CTC-G--ATAAT-GTTTTTTGACT-AGTGGTTTAATCTCAATCATTTTTA
* *
11294868 TTTTATGACTCATGATTTAAT
60 TTTTCTGACTCATGGTTTAAT
11294889 TTTGATCATT
Statistics
Matches: 238, Mismatches: 36, Indels: 25
0.80 0.12 0.08
Matches are distributed among these distances:
200 2 0.01
201 76 0.32
202 27 0.11
203 5 0.02
205 3 0.01
206 49 0.21
207 76 0.32
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (204 bp):
ACTTGTGGTTTAATCTCGATAATGTTTTTTGACTAGTGGTTTAATCTCAATCATTTTTATTTTCT
GACTCATGGTTTAATCCCAATCATTCTTTTTTTGACTCATGATTTAATACTAGTCGTTTTCATTT
CTTGACTCAGATTTAAACTCAGTCACATTCATTTTTTGACTTGTGATTTAATCCTAGTCATTTTC
ATTTTTTTG
Found at i:11295553 original size:22 final size:22
Alignment explanation
Indices: 11295527--11295571 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
11295517 ATCTCAGTTG
11295527 TTTTCATTTTTTGACTAGTGGT
1 TTTTCATTTTTTGACTAGTGGT
* *
11295549 TTTTCTTTTTTTGATTAGTGGT
1 TTTTCATTTTTTGACTAGTGGT
11295571 T
1 T
11295572 GTGTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.11, C:0.07, G:0.18, T:0.64
Consensus pattern (22 bp):
TTTTCATTTTTTGACTAGTGGT
Found at i:11295582 original size:22 final size:22
Alignment explanation
Indices: 11295535--11295582 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
11295525 TGTTTTCATT
* *
11295535 TTTTGACTAGTGGTTTTTCTTT
1 TTTTGACTAGTGGTTTGTCTTA
*
11295557 TTTTGATTAGTGGTTGTGT-TTA
1 TTTTGACTAGTGGTT-TGTCTTA
11295579 TTTT
1 TTTT
11295583 CTAACTTAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.10, C:0.04, G:0.21, T:0.65
Consensus pattern (22 bp):
TTTTGACTAGTGGTTTGTCTTA
Found at i:11296438 original size:139 final size:141
Alignment explanation
Indices: 11296242--11296520 Score: 352
Period size: 139 Copynumber: 2.0 Consensus size: 141
11296232 GTGGTTTGAT
* * **
11296242 CTCGGTCATTTTCATTTTCTAACTTGTTGATTAATCCTGATCATTTTTCATTTTTTGACTCATGA
1 CTCGATCATTTTCATTTTCTAACTTGTGGATTAATCCCAATCATTTTTCATTTTTTGACTCATGA
*
11296307 TTTAATCTCAG-TCATTTTCATTTC-CTAACTTATGATTTAAACCC-GATCGTATTCATTTTCTG
66 TTTAATC-CAGATCATTTTCATTTCTC-AACTCATGATTTAAACCCAG-TCGTATTCATTTTCTG
11296369 ACTTGTAGTTTAAA
128 ACTTGTAGTTTAAA
* * * **
11296383 CTCGATCATTTTCA-TTT-TGACTTGTGGTTTAATCCCAATCATTTTTCATTTTTTGATTGTTGA
1 CTCGATCATTTTCATTTTCTAACTTGTGGATTAATCCCAATCATTTTTCATTTTTTGACTCATGA
* * * * *
11296446 TTTAATCCCGATCATTTTCATTTCTCGACTCATGATTTAATCCCAGTCGTTTTCATTTTTTGACT
66 TTTAATCCAGATCATTTTCATTTCTCAACTCATGATTTAAACCCAGTCGTATTCATTTTCTGACT
*
11296511 TGTTGTTTAA
131 TGTAGTTTAA
11296521 TCTCAGTTTT
Statistics
Matches: 119, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
138 2 0.02
139 99 0.83
140 5 0.04
141 13 0.11
ACGTcount: A:0.22, C:0.18, G:0.11, T:0.49
Consensus pattern (141 bp):
CTCGATCATTTTCATTTTCTAACTTGTGGATTAATCCCAATCATTTTTCATTTTTTGACTCATGA
TTTAATCCAGATCATTTTCATTTCTCAACTCATGATTTAAACCCAGTCGTATTCATTTTCTGACT
TGTAGTTTAAA
Found at i:11296519 original size:106 final size:107
Alignment explanation
Indices: 11296108--11296730 Score: 398
Period size: 106 Copynumber: 5.9 Consensus size: 107
11296098 TTCTTGGCCA
* * * ** * * *
11296108 TTTTCATTTTCTGACTCGTTGTTTGATCTAGGTCATTTTCATTT-TCTAACTCATGGTTTAATCC
1 TTTTCATTTTCTGACTTGTAGTTTAATCCCGATCATTTTCATTTCTCTGACTTATGGTTTAATCC
* * ** **
11296172 CGATCA-TTTTCATATATTTGACTTGTGGTTTAATCCTGGTTGT
66 CAAT-AGTTTTCAT-TTTTTGACTTGTGGTTTAATCCCAGTCAT
* * ** * * * * * * * *
11296215 TTTTCTTTTTTTGACCAGTGGTTTGATCTCGGTCATTTTCATTT-TCTAACTTGTTGATTAATCC
1 TTTTCATTTTCTGACTTGTAGTTTAATCCCGATCATTTTCATTTCTCTGACTTATGGTTTAATCC
** * ** * *
11296279 TGATCATTTTTCATTTTTTGACTCATGATTTAATCTCAGTCA-
66 CAAT-AGTTTTCATTTTTTGACTTGTGGTTTAATCCCAGTCAT
* * * * * * * * *
11296321 TTTTCATTTCCTAACTTAT-GATTTAAACCCGATCGTATTCATTT-TCTGACTTGTAGTTTAAAC
1 TTTTCATTTTCTGACTTGTAG-TTTAATCCCGATCATTTTCATTTCTCTGACTTATGGTTTAATC
* * *
11296384 TCGATCA-TTTTCA--TTTTGACTTGTGGTTTAATCCCAATCAT
65 CCAAT-AGTTTTCATTTTTTGACTTGTGGTTTAATCCCAGTCAT
* * * *
11296425 TTTTCATTTTTTGA-TTGTTGATTTAATCCCGATCATTTTCATTTCTC-GACTCATGATTTAATC
1 TTTTCATTTTCTGACTTGTAG-TTTAATCCCGATCATTTTCATTTCTCTGACTTATGGTTTAATC
* * * *
11296488 CCAGTCGTTTTCATTTTTTGACTTGTTGTTTAATCTCAGT--T
65 CCAATAGTTTTCATTTTTTGACTTGTGGTTTAATCCCAGTCAT
* * * * * * ** *
11296529 TTTTTAATTTCTAATTTGTAGTTTAATCTCAATTGTTTTC-CTTCTCTGACTTATGGTTTAATCC
1 TTTTCATTTTCTGACTTGTAGTTTAATCCCGATCATTTTCATTTCTCTGACTTATGGTTTAATCC
* * * *
11296593 CATTAGTTTTTC-TTTATTTGACTAGTGGTTTAATACCGGTCA-
66 CAATAG-TTTTCATTT-TTTGACTTGTGGTTTAATCCCAGTCAT
* * * *
11296635 TTTTCATTTTCTGACTAGTAGTTTAATCCCGAACATTTTTATTT-TCTAACTTATGGTTTAATCC
1 TTTTCATTTTCTGACTTGTAGTTTAATCCCGATCATTTTCATTTCTCTGACTTATGGTTTAATCC
* * *
11296699 CAATTGTTTTCATTTTTTGACTAGAGGTTTAA
66 CAATAGTTTTCATTTTTTGACTTGTGGTTTAA
11296731 GCTCGATCTT
Statistics
Matches: 402, Mismatches: 98, Indels: 34
0.75 0.18 0.06
Matches are distributed among these distances:
103 30 0.07
104 100 0.25
105 59 0.15
106 126 0.31
107 80 0.20
108 7 0.02
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.51
Consensus pattern (107 bp):
TTTTCATTTTCTGACTTGTAGTTTAATCCCGATCATTTTCATTTCTCTGACTTATGGTTTAATCC
CAATAGTTTTCATTTTTTGACTTGTGGTTTAATCCCAGTCAT
Found at i:11296568 original size:139 final size:135
Alignment explanation
Indices: 11296286--11296718 Score: 365
Period size: 139 Copynumber: 3.1 Consensus size: 135
11296276 TCCTGATCAT
* * * *
11296286 TTTTCATTTTTTGACTCATGATTTAATCTCAGTCATTTTCATTTC-CTAACTTATGATTTAAACC
1 TTTTCATTTTTTGA-TTATGATTTAATCCCA-TCATTTTCATTTCTC-GAC-TATGATTTAATCC
* * * *
11296350 CGATCGTATTCATTTTCTGACTTGTAGTTTAAACTC-G-ATCATTTTCATTT-TGACTTGTGGTT
62 CG-TCGTTTTCATTTTCTGACTTGTAGTTTAATCTCAGTAT--TTTTAATTTCTAACTTGTGGTT
11296412 TAATCCCAATCAT-
124 TAATCCCAAT--TG
*
11296425 TTTTCATTTTTTGATTGTTGATTTAATCCCGATCATTTTCATTTCTCGACTCATGATTTAATCCC
1 TTTTCATTTTTTGATT-ATGATTTAATCCC-ATCATTTTCATTTCTCGACT-ATGATTTAATCCC
* * * * *
11296490 AGTCGTTTTCATTTTTTGACTTGTTGTTTAATCTCAGTTTTTTTAATTTCTAATTTGTAGTTTAA
63 -GTCGTTTTCATTTTCTGACTTGTAGTTTAATCTCAGTATTTTTAATTTCTAACTTGTGGTTTAA
*
11296555 TCTCAATTG
127 TCCCAATTG
* * * * * * * *
11296564 TTTTCCTTCTCTGACTTATGGTTTAATCCCATTAGTTTTTC-TTTATTTGACTAGTGGTTTAATA
1 TTTTCATTTTTTGA-TTATGATTTAATCCCATCA--TTTTCATTT-CTCGACTA-TGATTTAAT-
* * * * ** * *
11296628 CCGGTCATTTTCATTTTCTGACTAGTAGTTTAATCCCGAACATTTTTATTTTCTAACTTATGGTT
60 CCCGTCGTTTTCATTTTCTGACTTGTAGTTTAATCTC-AGTATTTTTAATTTCTAACTTGTGGTT
11296693 TAATCCCAATTG
124 TAATCCCAATTG
11296705 TTTTCATTTTTTGA
1 TTTTCATTTTTTGA
11296719 CTAGAGGTTT
Statistics
Matches: 237, Mismatches: 41, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
138 6 0.03
139 115 0.49
140 71 0.30
141 45 0.19
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (135 bp):
TTTTCATTTTTTGATTATGATTTAATCCCATCATTTTCATTTCTCGACTATGATTTAATCCCGTC
GTTTTCATTTTCTGACTTGTAGTTTAATCTCAGTATTTTTAATTTCTAACTTGTGGTTTAATCCC
AATTG
Found at i:11297256 original size:62 final size:62
Alignment explanation
Indices: 11297186--11297303 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 62
11297176 TCCTGACATG
*
11297186 TGGTTTAATCTCGA-TCATTTTCATTTTCTAACTCGTGGTTTAA-TCCCAGTCATTTTTTCTTA
1 TGGTTTAATCCCGACT-ATTTTCATTTTCTAACTCGTGGTTTAATTCCCA-TCATTTTTTCTTA
* * * *
11297248 TGGTTTAATCCCGACTTTTTTCATTTTTTGACTTGTGGTTTAATTCCCATCATTTT
1 TGGTTTAATCCCGACTATTTTCATTTTCTAACTCGTGGTTTAATTCCCATCATTTT
11297304 CAATCCTTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
62 43 0.88
63 6 0.12
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.52
Consensus pattern (62 bp):
TGGTTTAATCCCGACTATTTTCATTTTCTAACTCGTGGTTTAATTCCCATCATTTTTTCTTA
Found at i:11297270 original size:97 final size:103
Alignment explanation
Indices: 11297082--11297305 Score: 248
Period size: 104 Copynumber: 2.2 Consensus size: 103
11297072 TTCTACCTCA
* * * * *
11297082 TGGTTTAATCTTGGTCATTTTCATTTTTTAACTCATGGTTTAATCCCAGTGATTAATTTTTTTGA
1 TGGTTTAATCTCGATCATTTTCATTTTCTAACTCATGGTTTAATCCCAGTCATT-ATTTTCTTGA
* *
11297147 CTGGTGATTTAATCTCAGTGATTTTCATTTCCTGACATG
65 CTGGTGATTTAATCCCACTGATTTTCATTTCCTGACATG
*
11297186 TGGTTTAATCTCGATCATTTTCATTTTCTAACTCGTGGTTTAATCCCAGTCATT-TTTTCTT-A-
1 TGGTTTAATCTCGATCATTTTCATTTTCTAACTCATGGTTTAATCCCAGTCATTATTTTCTTGAC
* ** *
11297248 T-G-G-TTTAATCCCGACT-TTTTTCATTTTTTGACTTG
66 TGGTGATTTAATCCC-ACTGATTTTCATTTCCTGACATG
*
11297283 TGGTTTAAT-TCCCATCATTTTCA
1 TGGTTTAATCT-CGATCATTTTCA
11297306 ATCCTTGACT
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
96 1 0.01
97 43 0.41
98 3 0.03
99 1 0.01
100 1 0.01
101 1 0.01
102 6 0.06
104 49 0.47
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (103 bp):
TGGTTTAATCTCGATCATTTTCATTTTCTAACTCATGGTTTAATCCCAGTCATTATTTTCTTGAC
TGGTGATTTAATCCCACTGATTTTCATTTCCTGACATG
Found at i:11297371 original size:132 final size:131
Alignment explanation
Indices: 11297043--11297373 Score: 303
Period size: 132 Copynumber: 2.5 Consensus size: 131
11297033 TCATTTTTTA
*
11297043 ACTTGTGATTTAATTTTGATTGTTTT-ATTTTCTACCTCATGGTTTAATCTTGGTCATTTTCATT
1 ACTTGTGATTTAATTTCGATTGTTTTCATTTTCTA-CTCATGGTTTAA------TCATTTTCATT
* *
11297107 TTTTAACTCATGGTTTAATCCCAGTGATTAATTTTTTTGACTGGTGATTTAATCTCAGTGATTTT
59 TTTT-ACTCATGGTTTAATCCCAGTGATTAATTTTTTTGACTGGTGATTTAATCCCAGTCATTTT
*
11297172 CATTTCCTG
123 CATATCCTG
* * * ** * ****
11297181 ACATGTGGTTTAATCTCGATCATTTTCATTTTCTAACTCGTGGTTTAATCCCAGTCATTTTTT-C
1 ACTTGTGATTTAATTTCGATTGTTTTCATTTTCT-ACTCATGGTTTAATCATTTTCATTTTTTAC
* * ** * * *
11297245 TTATGGTTTAATCCCGACTTTTTTCA-TTTTTTGACTTGTGGTTTAATTCCCA-TCATTTTCA-A
65 TCATGGTTTAATCCC-A-GTGATTAATTTTTTTGACTGGTGATTTAA-TCCCAGTCATTTTCATA
11297307 TCCTTG
127 TCC-TG
*
11297313 ACTTGTGATTTAATTTCGATTGTTTTCATTTTCTGACTCATGATTTAATCATTTTCATTTT
1 ACTTGTGATTTAATTTCGATTGTTTTCATTTTCT-ACTCATGGTTTAATCATTTTCATTTT
11297374 CATTTTCTGA
Statistics
Matches: 154, Mismatches: 33, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
131 18 0.12
132 78 0.51
133 19 0.12
138 20 0.13
139 18 0.12
140 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (131 bp):
ACTTGTGATTTAATTTCGATTGTTTTCATTTTCTACTCATGGTTTAATCATTTTCATTTTTTACT
CATGGTTTAATCCCAGTGATTAATTTTTTTGACTGGTGATTTAATCCCAGTCATTTTCATATCCT
G
Found at i:11297973 original size:211 final size:211
Alignment explanation
Indices: 11297596--11297976 Score: 473
Period size: 211 Copynumber: 1.8 Consensus size: 211
11297586 TTTTTTGACA
* *
11297596 CATGGTTTAATTCTAATCACTTTTATTTTCTGATTCATGGTTTAATCCTAGTCATTTTCATTTTT
1 CATGGTTTAATTCTAATCACTTTTATTTTCTGATTCATGGTTTAATCCGAGTCATTTTCATTTTC
* *
11297661 TGACTCGGGGTTTAATCTTGGTCAATTTTATTTTCTGACTGAGGGTTAACCCTAATCATTTTTTA
66 TGACTCGGAGTTTAATCTTGATCAATTTTATTTTCTGACTGAGGGTTAACCCTAATCATTTTTTA
* * *
11297726 TTTTTTTGACTCGTAATTTAATCTCGATTGTTTTCTTTTTTTGACTTATAGTTTAATCTAGGCCC
131 TTTTTCTGACTCATAATTTAATCCCGATTGTTTTCTTTTTTTGACTTATAGTTTAATCTAGGCCC
11297791 TTTACTTTGTCTAACT
196 TTTACTTTGTCTAACT
* ** * * *
11297807 CATGGTTTAATTTTGTTCATTTTTATTTTCTGACTTGA-GGTTTAATCCGAGTCATTTTTATTTT
1 CATGGTTTAATTCTAATCACTTTTATTTTCTGA-TTCATGGTTTAATCCGAGTCATTTTCATTTT
* * * * * * * * *
11297871 CTGACTCGTAGTTTAATCTTGATCATTTTTATTTTTTGATTTGTGGTTTAATCTTGATCA-TTTT
65 CTGACTCGGAGTTTAATCTTGATCAATTTTATTTTCTGA-CTGAGGGTTAACCCTAATCATTTTT
* **
11297935 TA-TTTTCTGATTCATGGTTTAATCCCGATCAT-TTTTCTTTTT
129 TATTTTTCTGACTCATAATTTAATCCCGAT--TGTTTTCTTTTT
11297977 CTAACTCATG
Statistics
Matches: 141, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
210 21 0.15
211 102 0.72
212 18 0.13
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (211 bp):
CATGGTTTAATTCTAATCACTTTTATTTTCTGATTCATGGTTTAATCCGAGTCATTTTCATTTTC
TGACTCGGAGTTTAATCTTGATCAATTTTATTTTCTGACTGAGGGTTAACCCTAATCATTTTTTA
TTTTTCTGACTCATAATTTAATCCCGATTGTTTTCTTTTTTTGACTTATAGTTTAATCTAGGCCC
TTTACTTTGTCTAACT
Found at i:11298224 original size:106 final size:106
Alignment explanation
Indices: 11298106--11298345 Score: 252
Period size: 106 Copynumber: 2.3 Consensus size: 106
11298096 TATTCCCAGT
* * * *
11298106 TTTTTCATTTTTTCACTCGTGGTTTAATCCCAGTTATTTTCATCTCCTGACTCATGGA-TTAATC
1 TTTTTCATTTTTTAACTCATGGTTTAATCCCAGTCATTTTCATCTCCTGACTCAT-GATTTAAAC
*** * * *
11298170 TTGGTCATTTTCATTTTTTGACTTATGGTTTAATCCTTA-TCA
65 CAAGTCATATTCATTTTTGGACTTATGGTTTAAT-CTAAGTCA
* * ** ** * *
11298212 TTTTTCATTTTTTGACTTATAATTTAATCCTGGTCATTTTCATTTCTTGACTCATGATTTAAACC
1 TTTTTCATTTTTTAACTCATGGTTTAATCCCAGTCATTTTCATCTCCTGACTCATGATTTAAACC
* *
11298277 AAGTCGTATTCATTTTTGGACTTGTGGTTTAATCTAAGTCA
66 AAGTCATATTCATTTTTGGACTTATGGTTTAATCTAAGTCA
*
11298318 TTTTT-ATTTTCTAACTCATGGTTTAATC
1 TTTTTCATTTTTTAACTCATGGTTTAATC
11298346 TTGGTCATTT
Statistics
Matches: 108, Mismatches: 24, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
105 23 0.21
106 85 0.79
ACGTcount: A:0.21, C:0.17, G:0.11, T:0.51
Consensus pattern (106 bp):
TTTTTCATTTTTTAACTCATGGTTTAATCCCAGTCATTTTCATCTCCTGACTCATGATTTAAACC
AAGTCATATTCATTTTTGGACTTATGGTTTAATCTAAGTCA
Found at i:11299320 original size:106 final size:105
Alignment explanation
Indices: 11298963--11299447 Score: 344
Period size: 106 Copynumber: 4.6 Consensus size: 105
11298953 ATTTCTTTTG
* * * * * * *
11298963 TTTTTATTTTCTAACTTAAGATTTAATTC-GAGTCA-TTTTCATTTTCTGATTCATAGTTTAATC
1 TTTTCATTTTCTAACTTATGGTTTAATCCTGA-TCATTTTTCATTTTTTGACTCATAATTTAATC
* * * * * *
11299026 TCGATCATTTTTATTTTTTGA-TTTGTAGTTTAATCTTAATCG
65 CCAATTATTTTCATTTTTTGACTATG--GTTTAATCTTAATCA
* * * *
11299068 TTTTTATTTTCTAA-TTCGTGGTTTAATCCTGATCATTTTTCTTTTTTTGACTCATGATTTAATC
1 TTTTCATTTTCTAACTT-ATGGTTTAATCCTGATCATTTTTCATTTTTTGACTCATAATTTAATC
* * * * * **
11299132 CTAATTGTTTTCATTTTCTAACTAGTGGTTTAATCTCAATTTT
65 CCAATTATTTTCATTTTTTGACTA-TGGTTTAATCTTAA-TCA
* * ** **
11299175 TTTTCTTTTTCTGAC-TAGTGGTTTAATCCCAAT--TGTTTTCATTTTTTGACTCATGGTTTAAT
1 TTTTCATTTTCTAACTTA-TGGTTTAATCCTGATCAT-TTTTCATTTTTTGACTCATAATTTAAT
* **
11299237 CCCAATTATTTTCATTTTTTGACTCATGGATTAATCTTGGTCA
64 CCCAATTATTTTCATTTTTTGACT-ATGGTTTAATCTTAATCA
*
11299280 TTTTCATTTTCTAACTTATGGTTTAATCCTTATCATTTTTCATTTTTTGACTCATAATTTAATCC
1 TTTTCATTTTCTAACTTATGGTTTAATCCTGATCATTTTTCATTTTTTGACTCATAATTTAATCC
** * * * * * *
11299345 TGATCATTTTAATTTCTTGACTTATGATTTAAATC-CAATCG
66 CAATTATTTTCATTTTTTGAC-TATGGTTT-AATCTTAATCA
* ** * * * *
11299386 TATTCATTTTCGGACTTATGGTTTAAT-CTAAGTCA-TTTTCA-TTTCTAACTCATAGTTTAATC
1 TTTTCATTTTCTAACTTATGGTTTAATCCTGA-TCATTTTTCATTTTTTGACTCATAATTTAATC
11299448 ATGATCTAAA
Statistics
Matches: 301, Mismatches: 63, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
104 20 0.07
105 62 0.21
106 183 0.61
107 34 0.11
108 2 0.01
ACGTcount: A:0.23, C:0.15, G:0.09, T:0.53
Consensus pattern (105 bp):
TTTTCATTTTCTAACTTATGGTTTAATCCTGATCATTTTTCATTTTTTGACTCATAATTTAATCC
CAATTATTTTCATTTTTTGACTATGGTTTAATCTTAATCA
Found at i:11299903 original size:106 final size:107
Alignment explanation
Indices: 11299471--11300266 Score: 337
Period size: 106 Copynumber: 7.6 Consensus size: 107
11299461 CCATCGATCA
* * ** ** * *
11299471 TTTTTATTTTCTGACTCATGGTTTAATCTCTATTGTTTTCATTTTTTTTTCTTATGGTTTAATCT
1 TTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCA-TTTTTTGACTCATGGTTTAATCC
* * * * *
11299536 C-GATCTTTTTCATTT-TTTGACTTGTGGTTTAAT-TCCCATCA-
65 CAG-TCATTTTCATTTCTCTAACTTGTGATTTAATCT-CCGTCAT
* * * * * ** ** * *
11299577 TTTTCAATGTCTGACTCATGATTTAATTTTGATTGTTTTCATTTTTTGACTCATTTTTTAAACCT
1 TTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * ** * * *
11299642 TGTCA-TTT--TTT-TCTGACTCATAATTTAAT-T--TTGAT
66 AGTCATTTTCATTTCTCTAACTTGTGATTTAATCTCCGTCAT
* * * * * * *
11299677 TGTTTTCATTTTCTGACTCGTGATTTGATC-CTAGCATCTTCATTTTTTGA-TCCGTGATTT-AT
1 T-TTTT-ATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACT-CATGGTTTAAT
* * * * * * **
11299739 -CTAGGTCA-TAT-ATTTTCTCTTACTAGAGATTTAATTTTGGTCA-
63 CCCA-GTCATTTTCA-TTTCTCTAACTTGTGATTTAATCTCCGTCAT
* *
11299782 TTTTCATTTTCTGACTCATGATTTAATCTCGATCATTTTGATTTTTTGACTCATGGTTTAATCCC
1 TTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCC
*
11299847 AGTTATTTTCATTTCTCTAACTTGTGATTTAAT-T-C-T-AGT
66 AGTCATTTTCATTTCTCTAACTTGTGATTTAATCTCCGTCA-T
* ** * * * *
11299886 TGTTTTGATTTTTTGACTTGTTG-TTTAATC-CTGGTCGTTTTCATTTTTTAACTCATGATTTAA
1 T-TTTT-ATTTTCTGAC-TCATGATTTAATCTC-GATCATTTTCATTTTTTGACTCATGGTTTAA
* * * * *
11299949 TCTCAGTCATTTTCATTTTTTTGACTTGTGGTTTAATCTCCGTCAT
62 TCCCAGTCATTTTCATTTCTCTAACTTGTGATTTAATCTCCGTCAT
* * **
11299995 TTTTTA-TTTCTCACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTAATGGTTTAATCTT
1 TTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCC
* * * * ** * **
11300059 GGTCGTTTTGATTT-TCTAACTCGCAATTTAATTTTAGTCA-
66 AGTCATTTTCATTTCTCTAACTTGTGATTTAATCTCCGTCAT
* * * * * * ** *
11300099 TTTTTATTTTTTGACACGTGGTTCAATCCTGGA-C-TTTATC-TTTTCTCTGACTTGTGATTTAA
1 TTTTTATTTTCTGACTCATGATTTAAT-CTCGATCATTT-TCATTTT-T-TGACTCATGGTTTAA
* * * * * ** *
11300161 TACTAGTCGTTTTGATTT-TCTGACTCATCATTTAATC-CCGATCA-
62 TCCCAGTCATTTTCATTTCTCTAACTTGTGATTTAATCTCCG-TCAT
* * *
11300205 TTTTTATTTTCTGACTCGTGGTTTAATCT-TAGTCATTTTCATTTTTTGACTCATGGTTTAAT
1 TTTTTATTTTCTGACTCATGATTTAATCTCGA-TCATTTTCATTTTTTGACTCATGGTTTAAT
11300267 TTTAGTTTTT
Statistics
Matches: 522, Mismatches: 128, Indels: 81
0.71 0.18 0.11
Matches are distributed among these distances:
99 4 0.01
100 9 0.02
101 22 0.04
102 39 0.07
103 35 0.07
104 44 0.08
105 84 0.16
106 262 0.50
107 14 0.03
108 5 0.01
109 3 0.01
110 1 0.00
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.53
Consensus pattern (107 bp):
TTTTTATTTTCTGACTCATGATTTAATCTCGATCATTTTCATTTTTTGACTCATGGTTTAATCCC
AGTCATTTTCATTTCTCTAACTTGTGATTTAATCTCCGTCAT
Found at i:11300878 original size:65 final size:64
Alignment explanation
Indices: 11300807--11300942 Score: 175
Period size: 65 Copynumber: 2.1 Consensus size: 64
11300797 GTCATTTTTA
* * *
11300807 ATTTTTTTGACTCATGGTTTAATTTC-AGTGGTTTTCATTTTTTGACTTGTGGTTTAGTCCCGAT
1 ATTTTTTTGACT-ATGGTTTAATCTCGA-TGGTTTTCATTTTTTGACTGGTGGTTTAATCCCGAT
11300871 C
64 C
* * * *
11300872 ATTTTTTTTTACTGTGGTTTAATCTCGATTGTTTTTATTTTTTGACTGGTGGTTTAATCCCGATC
1 A-TTTTTTTGACTATGGTTTAATCTCGATGGTTTTCATTTTTTGACTGGTGGTTTAATCCCGATC
11300937 ATTTTT
1 ATTTTT
11300943 ATATTTTTGA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
64 5 0.08
65 46 0.74
66 11 0.18
ACGTcount: A:0.15, C:0.12, G:0.17, T:0.55
Consensus pattern (64 bp):
ATTTTTTTGACTATGGTTTAATCTCGATGGTTTTCATTTTTTGACTGGTGGTTTAATCCCGATC
Found at i:11300888 original size:30 final size:30
Alignment explanation
Indices: 11300844--11300942 Score: 99
Period size: 30 Copynumber: 3.1 Consensus size: 30
11300834 GTGGTTTTCA
* *
11300844 TTTTTTGACTTGTGGTTTAGTCCCGATCATT
1 TTTTTTTAC-TGTGGTTTAATCCCGATCATT
* **
11300875 TTTTTTTACTGTGGTTTAATCTCGATTGTTTT
1 TTTTTTTACTGTGGTTTAATCCCGA-T-CATT
11300907 TATTTTTTGACTGGTGGTTTAATCCCGATCATT
1 T-TTTTTT-ACT-GTGGTTTAATCCCGATCATT
11300940 TTT
1 TTT
11300943 ATATTTTTGA
Statistics
Matches: 55, Mismatches: 8, Indels: 9
0.76 0.11 0.12
Matches are distributed among these distances:
30 14 0.25
31 9 0.16
32 5 0.09
33 9 0.16
34 4 0.07
35 14 0.25
ACGTcount: A:0.14, C:0.13, G:0.17, T:0.56
Consensus pattern (30 bp):
TTTTTTTACTGTGGTTTAATCCCGATCATT
Found at i:11300927 original size:172 final size:171
Alignment explanation
Indices: 11300715--11301047 Score: 375
Period size: 171 Copynumber: 1.9 Consensus size: 171
11300705 TTTGACTCAC
* * ** *
11300715 GGTTTAATATCGATCATTTTTATTTTCTGAGTTATGGTTTAATCTGGGTCATTTTCAT-TATTTG
1 GGTTTAATATCGATCATTTTTATTTTCTGACTGATGGTTTAATCCCGATCATTTTCATATATTTG
** * * * * **
11300779 ACTTGTGATTTAATTCAAG-TCATTTTTAATTTTTTTGACTCATGGTTTAAT-TTCAGTGGTTTT
66 ACACGTGATTTAA-TCAAGTTCATTATCAA--TTTTTAACTCATAGTTTAATCTTCA-TCATTTT
*
11300842 CATTTTTTGACTTGTGGTTTAGTCCCGATCATTTTTTTTTACTGT
127 CATTTTTTGACTTGTGGTTTAATCCCGATCATTTTTTTTTACTGT
* ** * * * *
11300887 GGTTTAATCTCGATTGTTTTTATTTTTTGACTGGTGGTTTAATCCCGATCATTTTTATATTTTTG
1 GGTTTAATATCGATCATTTTTATTTTCTGACTGATGGTTTAATCCCGATCATTTTCATATATTTG
* * * *
11300952 ACACGTGGTTTAATCATGTTCGTTATCAATTTTTAACTCATAGTTTAATCTTGATCATTTTCATT
66 ACACGTGATTTAATCAAGTTCATTATCAATTTTTAACTCATAGTTTAATCTTCATCATTTTCATT
*
11301017 TTTTGGCTTGTGGTTTAATCCCGATCATTTT
131 TTTTGACTTGTGGTTTAATCCCGATCATTTT
11301048 CATTTCCTGA
Statistics
Matches: 132, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
171 56 0.42
172 54 0.41
173 22 0.17
ACGTcount: A:0.20, C:0.12, G:0.15, T:0.53
Consensus pattern (171 bp):
GGTTTAATATCGATCATTTTTATTTTCTGACTGATGGTTTAATCCCGATCATTTTCATATATTTG
ACACGTGATTTAATCAAGTTCATTATCAATTTTTAACTCATAGTTTAATCTTCATCATTTTCATT
TTTTGACTTGTGGTTTAATCCCGATCATTTTTTTTTACTGT
Found at i:11301144 original size:65 final size:66
Alignment explanation
Indices: 11300987--11301182 Score: 175
Period size: 65 Copynumber: 2.9 Consensus size: 66
11300977 TCAATTTTTA
* * *
11300987 ACTCATAGTTTAAT-CTTGATCATTTTCATTTTTTGGCTT-GTGGTTTAATCCCGATCATTTTCA
1 ACTCATAATTTAATCCTAG-TCATTTTCATTTTTT-GCTTAGTGGTTTAATCTCGATCA-TTT--
11301050 TTTCCTG
61 TTT-CTG
* * *
11301057 ACTCATAATTTAATTCTGGTCATTTTCATTTTTTGATTAGTGGTTTAATCTCGATCATTTTTT-T
1 ACTCATAATTTAATCCTAGTCATTTTCATTTTTTGCTTAGTGGTTTAATCTCGATCATTTTTTCT
11301121 G
66 G
** ** * ** *
11301122 ACTGGTGGTTTAATCCTAGTCATTTTTATTTTCTCCCTCA-TGGTTTAATCTCGATCATTTT
1 ACTCATAATTTAATCCTAGTCATTTTCATTTT-TTGCTTAGTGGTTTAATCTCGATCATTTT
11301183 CATTTTCTGA
Statistics
Matches: 108, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
65 48 0.44
66 3 0.03
67 3 0.03
69 6 0.06
70 45 0.42
71 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.51
Consensus pattern (66 bp):
ACTCATAATTTAATCCTAGTCATTTTCATTTTTTGCTTAGTGGTTTAATCTCGATCATTTTTTCT
G
Found at i:11301145 original size:30 final size:30
Alignment explanation
Indices: 11301085--11301148 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
11301075 GTCATTTTCA
* *
11301085 TTTTTTGATTAGTGGTTTAATCTCGATCAT
1 TTTTTTGACTAGTGGTTTAATCTAGATCAT
*
11301115 TTTTTTGACTGGTGGTTTAATCCTAG-TCAT
1 TTTTTTGACTAGTGGTTTAAT-CTAGATCAT
11301145 TTTT
1 TTTT
11301149 ATTTTCTCCC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 27 0.90
31 3 0.10
ACGTcount: A:0.17, C:0.11, G:0.17, T:0.55
Consensus pattern (30 bp):
TTTTTTGACTAGTGGTTTAATCTAGATCAT
Found at i:11301145 original size:100 final size:100
Alignment explanation
Indices: 11301015--11301217 Score: 232
Period size: 100 Copynumber: 2.0 Consensus size: 100
11301005 ATCATTTTCA
* * * * *
11301015 TTTTTTGGCTTGTGGTTTAATCCCGATCATTTTCATTTCCTGACTCATAATTTAAT-TCTGGTCA
1 TTTTTTGACTGGTGGTTTAATCCAGATCATTTTCATTTCCTCACTCATAATTTAATCTC-GATCA
* *
11301079 TTTTCATTTTTTGA-TTAGTGGTTTAATCTCGATCAT
65 TTTTCATTTTCTGACTTA-TGGTTTAAACTCGATCAT
* * * **
11301115 TTTTTTGACTGGTGGTTTAATCCTAG-TCATTTTTATTTTCTCCCTCATGGTTTAATCTCGATCA
1 TTTTTTGACTGGTGGTTTAATCC-AGATCATTTTCATTTCCTCACTCATAATTTAATCTCGATCA
* *
11301179 TTTTCATTTTCTGACTTATTGTTTAAACTCGATTAT
65 TTTTCATTTTCTGACTTATGGTTTAAACTCGATCAT
11301215 TTT
1 TTT
11301218 CATTTTTTGA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
100 80 0.93
101 6 0.07
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (100 bp):
TTTTTTGACTGGTGGTTTAATCCAGATCATTTTCATTTCCTCACTCATAATTTAATCTCGATCAT
TTTCATTTTCTGACTTATGGTTTAAACTCGATCAT
Found at i:11301434 original size:69 final size:69
Alignment explanation
Indices: 11301303--11301434 Score: 151
Period size: 69 Copynumber: 1.9 Consensus size: 69
11301293 TTCTGACTCC
* * * * * *
11301303 TGGTTTATTCCCGATCATTTTCATTTTTGACCATGGTTTAATTCTAGTGGCTTTTCTTTTTCTAG
1 TGGTTTAATCCAGATCATTTTCATTTTTGACCATGATTTAATCCTAATGGCTTTTCTATTTCTAG
11301368 TTGG
66 TTGG
* * *
11301372 TGGTTTAATCCAGGTCATTTTTATTTTTTGACTCATGATTTAATCCTAATTG-TTTT-TATTTCT
1 TGGTTTAATCCAGATCATTTTCA-TTTTTGAC-CATGATTTAATCCTAATGGCTTTTCTATTTCT
11301435 TGACTCGTGA
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
69 25 0.48
70 12 0.23
71 15 0.29
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.54
Consensus pattern (69 bp):
TGGTTTAATCCAGATCATTTTCATTTTTGACCATGATTTAATCCTAATGGCTTTTCTATTTCTAG
TTGG
Found at i:11301611 original size:171 final size:174
Alignment explanation
Indices: 11301320--11301641 Score: 388
Period size: 171 Copynumber: 1.9 Consensus size: 174
11301310 TTCCCGATCA
* * *
11301320 TTTTCATTTTTGACCATGGTTTAATTCTAGTGGCTTTTCTTTTTCTAGTTGGTGGTTTAATCCAG
1 TTTTCATTTTTGACCATGATTTAATTCTAGTGGATTTTCTTTTTCTAGCTGGTGGTTTAATCCAG
* * ** * *
11301385 GTCATTTTTATTTTTTGACTCATGATTTAATCCTAATTGTTTTTATTTCTTGACTCGTGATTTAA
66 GTCACTTTCATTTTTTGACTCATGATTTAATCCTAATCATTTTCATTTCTTGACTCATGATTTAA
11301450 ACCCAATCATATTCATTTTCTAATTGGTGAGCTAATCTTGATTG
131 ACCCAATCATATTCATTTTCTAATTGGTGAGCTAATCTTGATTG
11301494 TTTTCATTTTTTGACTCATGATTTAATCTCT-GT-GATTTT-TTTTT-TA-CTGGT-GTTTAATC
1 TTTTCA-TTTTTGAC-CATGATTTAAT-TCTAGTGGATTTTCTTTTTCTAGCTGGTGGTTTAAT-
* ** * * * *
11301553 CCA-GTTACTTTCATTTTTTGACTTGTGATTTAATCTTGATCATTTTCATTTTTTGACTCATGGT
62 CCAGGTCACTTTCATTTTTTGACTCATGATTTAATCCTAATCATTTTCATTTCTTGACTCATGAT
* * *
11301617 TTAATCCCTATCATTTTCATTTTCT
127 TTAAACCCAATCATATTCATTTTCT
11301642 GACTCAAAGT
Statistics
Matches: 125, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
171 77 0.62
172 7 0.06
173 2 0.02
174 11 0.09
175 13 0.10
176 12 0.10
177 3 0.02
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (174 bp):
TTTTCATTTTTGACCATGATTTAATTCTAGTGGATTTTCTTTTTCTAGCTGGTGGTTTAATCCAG
GTCACTTTCATTTTTTGACTCATGATTTAATCCTAATCATTTTCATTTCTTGACTCATGATTTAA
ACCCAATCATATTCATTTTCTAATTGGTGAGCTAATCTTGATTG
Found at i:11301937 original size:65 final size:62
Alignment explanation
Indices: 11301779--11301963 Score: 187
Period size: 62 Copynumber: 2.9 Consensus size: 62
11301769 ATTGTTTTCC
* * * * * *
11301779 TTTTCTTAACTCAT-AGTTTAATCCTAGTCGTTTTCATTTTCAAACTTATGGTTTAATCTCGAT
1 TTTTTTTAACTCATGA-TTTAATCCTAGTCATTTTCATTTT-TAACTCATGGTTTAATCCCAAT
* *
11301842 TTTTTTT-ACT-AGTGTTTTAATCCTAATCATTTTCATTTTTAACTCATGGTTTAATCCCAAT
1 TTTTTTTAACTCA-TGATTTAATCCTAGTCATTTTCATTTTTAACTCATGGTTTAATCCCAAT
* * *
11301903 CATTTTTTTAGACTCATGATTTAATCCTGGTCATTTTCATTTCTTGACTCGTGGTTTAATC
1 --TTTTTTTA-ACTCATGATTTAATCCTAGTCATTTTCATTT-TTAACTCATGGTTTAATC
11301964 ATGGGGTTTT
Statistics
Matches: 101, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
61 19 0.19
62 26 0.26
63 13 0.13
65 26 0.26
66 17 0.17
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (62 bp):
TTTTTTTAACTCATGATTTAATCCTAGTCATTTTCATTTTTAACTCATGGTTTAATCCCAAT
Found at i:11302168 original size:106 final size:105
Alignment explanation
Indices: 11302002--11302191 Score: 265
Period size: 106 Copynumber: 1.8 Consensus size: 105
11301992 ATCTTGGTCA
* * * * * *
11302002 TTTTTATTTTTTGACTCATGGTTTAATCCCAGTCATTTTCATTTTTTGACTTGGGGTTTAAT-TT
1 TTTTTATTTTTTGACTCATGGGTTAATCCCAATCATTTTCATTTTTTGACTCGAGATTTAATCCT
11302066 CAATCATTTTCATTTTTTGATTCAAGGTTTAACCCTTATCG
66 -AATCATTTTCATTTTTTGATTCAAGGTTTAACCCTTATCG
**
11302107 TTTTTCATTTTTTGACTCATGGGTTAATCCCAATTGTTTTCATTTTTTGACTCGAGATTTAATCC
1 TTTTT-ATTTTTTGACTCATGGGTTAATCCCAATCATTTTCATTTTTTGACTCGAGATTTAATCC
* *
11302172 TAGTCATTTTTATTTTTTGA
65 TAATCATTTTCATTTTTTGA
11302192 CTCATCATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
105 5 0.07
106 67 0.92
107 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (105 bp):
TTTTTATTTTTTGACTCATGGGTTAATCCCAATCATTTTCATTTTTTGACTCGAGATTTAATCCT
AATCATTTTCATTTTTTGATTCAAGGTTTAACCCTTATCG
Found at i:11302571 original size:106 final size:104
Alignment explanation
Indices: 11302345--11302643 Score: 271
Period size: 106 Copynumber: 2.8 Consensus size: 104
11302335 ATCGTTTTCA
* * * * * *
11302345 TTTTGACTTGTGGTTTAATCCTAGTTGTTTTTCATTTTTTGACTCATGATTTAATCTTGATCATT
1 TTTTGACTCGTGATTTAATCCTGGTCGTTTTT-ATTTTTTAACTCATGATTTAATCCTGATCATT
* **
11302410 TTCATTTCTTGACTTGTGATTTAAACCGGTTGTATTCATT
65 TTCATTTCTTGACTTGAGATTTAAACCGGTACTATTCATT
* **
11302450 TTTTGACTCGAGATTTAATCCTGGTCGTTTTTATTTTTTAACTCATGATTTAATCCTGATGGTTT
1 TTTTGACTCGTGATTTAATCCTGGTCGTTTTTATTTTTTAACTCATGATTTAATCCTGAT-CATT
* * *
11302515 TTC-TTTTTCTGA-TTAGAGCTTTAATCCTGGTCACT-TTCATT
65 TTCATTTCT-TGACTT-GAGATTTAAACC-GGT-ACTATTCATT
** * * * * * ** *
11302556 TTTTGACTCGTGATTTAATTTTGATCATTTTTATTTTCTAACTCGTGGTTTAATCCCAAGCATTT
1 TTTTGACTCGTGATTTAATCCTGGTCGTTTTTATTTTTTAACTCATGATTTAATCCTGATCATTT
* * *
11302621 TAATTTTTTGACTTGTGATTTAA
66 TCATTTCTTGACTTGAGATTTAA
11302644 TTTTGACCAT
Statistics
Matches: 156, Mismatches: 31, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
104 32 0.21
105 58 0.37
106 65 0.42
107 1 0.01
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.52
Consensus pattern (104 bp):
TTTTGACTCGTGATTTAATCCTGGTCGTTTTTATTTTTTAACTCATGATTTAATCCTGATCATTT
TCATTTCTTGACTTGAGATTTAAACCGGTACTATTCATT
Found at i:11306286 original size:137 final size:140
Alignment explanation
Indices: 11306127--11306505 Score: 326
Period size: 141 Copynumber: 2.7 Consensus size: 140
11306117 ATTCGAGTTG
* * * ** *
11306127 TTTTTATTTTCTGACTCATGGTTTAAT-TGGCATCATTTATATTTTTTGA-TTCATTTTTTAATC
1 TTTTCATTTTTTGACTCGTGGTTTAATCTGG-ATCATTTATATTTTTTGACTT-ATGGTCTAATC
* * *
11306190 CCTATCATTTTCATTTT-TCAACTCGTGGTTTAATCTC-A-ATGGTTT-TTTCTTGACTGGTGGT
64 CATATCATTTTCATTTTCT-AACTCGTGGTTTAATCTCAACATGGTTTATTTCCTGACTGGAGGT
*
11306251 TAAAT-CTCGGTCA
128 TAAATCCT-AGTCA
* * * *
11306264 TTTTCATTTTTTGACTCGTGGTTTAATCTGGGTTATTTTTATTTTTTGACTTGTGGTCTAATCCA
1 TTTTCATTTTTTGACTCGTGGTTTAATCTGGATCATTTATATTTTTTGACTTATGGTCTAATCCA
* * ** * *
11306329 TGTCTTTTTCATTTTCTAACTCGTGGTTTAATCTCAGACATTTTTTATTTCCTGACTTGAGGTTT
66 TATCATTTTCATTTTCTAACTCGTGGTTTAATCTCA-ACATGGTTTATTTCCTGACTGGAGGTTA
11306394 AATCCTAGTCA
130 AATCCTAGTCA
* * * * * * * * *
11306405 TTTTCATTTTTTGACTTGTGATTTAATACT-AATCATTTTTGTTTTCTGAATTATAGTTTAATCC
1 TTTTCATTTTTTGACTCGTGGTTTAAT-CTGGATCATTTATATTTTTTGACTTATGGTCTAATCC
* * * * *
11306469 -TGATCCTTTTCATTTTTTGACTCATAGTTTAATCTCA
65 AT-ATCATTTTCATTTTCTAACTCGTGGTTTAATCTCA
11306506 GTTATTTTTC
Statistics
Matches: 195, Mismatches: 37, Indels: 16
0.79 0.15 0.06
Matches are distributed among these distances:
137 78 0.40
138 6 0.03
139 1 0.01
140 6 0.03
141 100 0.51
142 4 0.02
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.53
Consensus pattern (140 bp):
TTTTCATTTTTTGACTCGTGGTTTAATCTGGATCATTTATATTTTTTGACTTATGGTCTAATCCA
TATCATTTTCATTTTCTAACTCGTGGTTTAATCTCAACATGGTTTATTTCCTGACTGGAGGTTAA
ATCCTAGTCA
Found at i:11306303 original size:67 final size:69
Alignment explanation
Indices: 11306194--11306431 Score: 191
Period size: 71 Copynumber: 3.4 Consensus size: 69
11306184 TTAATCCCTA
* *
11306194 TCATTTTCATTTTTCAACTCGTGGTTTAATCTCAATG-GTTT-TTTCTTGACTGGTGGT-TAAAT
1 TCATTTTCATTTTTTAACTCGTGGTTTAATCTCAATGATTTTATTTCTTGACTGGTGGTCT-AAT
11306256 CTC-GG
65 C-CAGG
* *** * * *
11306261 TCATTTTCATTTTTTGACTCGTGGTTTAATCTGGGTTATTTTTATTTTTTGACTTGTGGTCTAAT
1 TCATTTTCATTTTTTAACTCGTGGTTTAATCTCAATGA-TTTTATTTCTTGACTGGTGGTCTAAT
*
11306326 CCATG
65 CCAGG
* * * * * * *
11306331 TCTTTTTCATTTTCTAACTCGTGGTTTAATCTCAGACAT-TTTTTATTTCCTGACTTGAGGTTTA
1 TCATTTTCATTTTTTAACTCGTGGTTTAATCTC--A-ATGATTTTATTTCTTGACTGGTGGTCTA
11306395 ATCCTA-G
63 ATCC-AGG
* * *
11306402 TCATTTTCATTTTTTGACTTGTGATTTAAT
1 TCATTTTCATTTTTTAACTCGTGGTTTAAT
11306432 ACTAATCATT
Statistics
Matches: 136, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
67 31 0.23
69 4 0.03
70 48 0.35
71 51 0.38
72 1 0.01
73 1 0.01
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (69 bp):
TCATTTTCATTTTTTAACTCGTGGTTTAATCTCAATGATTTTATTTCTTGACTGGTGGTCTAATC
CAGG
Found at i:11307405 original size:26 final size:26
Alignment explanation
Indices: 11307374--11307425 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
11307364 CTAACTCATG
11307374 GTTTAATCCCGATCATTTTCATTTTT
1 GTTTAATCCCGATCATTTTCATTTTT
11307400 GTTTAATCCCGATCATTTTCATTTTT
1 GTTTAATCCCGATCATTTTCATTTTT
11307426 TGACTTATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.08, T:0.54
Consensus pattern (26 bp):
GTTTAATCCCGATCATTTTCATTTTT
Found at i:11307453 original size:271 final size:271
Alignment explanation
Indices: 11307141--11307670 Score: 934
Period size: 271 Copynumber: 2.0 Consensus size: 271
11307131 TTAATTTTGG
11307141 TCATTTTCATTTTTTGACTCATGGTTTAGTCTTGGTCATTTTTCTTTTTCTGACTGGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAGTCTTGGTCATTTTTCTTTTTCTGACTGGTGGTTTAA
* * *
11307206 TCCTAATCGTTTTCATTTTCTGACTGGTAGTTTAATCATAGTCATTTTCATTTTTTGACTCATGG
66 TCCCAATCATTTTCATTTTCTGACTGGTAGTTTAATCATAATCATTTTCATTTTTTGACTCATGG
*
11307271 TTTAATCATGTTCGTTATCAATTTCTAACTTGTAGTTTAATCTCAGTCATTTTTATTTTCTAGCT
131 TTTAATCATGTTCGTTATCAATTTCTAACTTATAGTTTAATCTCAGTCATTTTTATTTTCTAGCT
*
11307336 TATGTTTAATCTAGGTCGTTTTCATTTCCTAACTCATGGTTTAATCCCGATCATTTTCATTTTTG
196 TATGTTTAATCTAAGTCGTTTTCATTTCCTAACTCATGGTTTAATCCCGATCATTTTCATTTTTG
11307401 TTTAATCCCGA
261 TTTAATCCCGA
* *
11307412 TCATTTTCATTTTTTGACTTATGGTTTAGTCTTGGTCATTTTTCTTTTTTTGACTGGTGGTTTAA
1 TCATTTTCATTTTTTGACTCATGGTTTAGTCTTGGTCATTTTTCTTTTTCTGACTGGTGGTTTAA
* * * * *
11307477 TCCCGATCATTTTCATTTTTTGACTGGTGGTTTAATCCTAATCATTTTCTTTTTTTGACTCATGG
66 TCCCAATCATTTTCATTTTCTGACTGGTAGTTTAATCATAATCATTTTCATTTTTTGACTCATGG
11307542 TTTAATCATGTTCGTTATCAATTTCTAACTTATAGTTTAATCTCAGTCATTTTTATTTTCTAGCT
131 TTTAATCATGTTCGTTATCAATTTCTAACTTATAGTTTAATCTCAGTCATTTTTATTTTCTAGCT
* *
11307607 TGTTTTTAATCTAAGTCGTTTTCATTTCCTAACTCATGGTTTAATCCCGATCATTTTCATTTTT
196 TATGTTTAATCTAAGTCGTTTTCATTTCCTAACTCATGGTTTAATCCCGATCATTTTCATTTTT
11307671 TGACCCATAG
Statistics
Matches: 245, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
271 245 1.00
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.52
Consensus pattern (271 bp):
TCATTTTCATTTTTTGACTCATGGTTTAGTCTTGGTCATTTTTCTTTTTCTGACTGGTGGTTTAA
TCCCAATCATTTTCATTTTCTGACTGGTAGTTTAATCATAATCATTTTCATTTTTTGACTCATGG
TTTAATCATGTTCGTTATCAATTTCTAACTTATAGTTTAATCTCAGTCATTTTTATTTTCTAGCT
TATGTTTAATCTAAGTCGTTTTCATTTCCTAACTCATGGTTTAATCCCGATCATTTTCATTTTTG
TTTAATCCCGA
Found at i:11308591 original size:67 final size:67
Alignment explanation
Indices: 11308467--11308592 Score: 146
Period size: 67 Copynumber: 1.9 Consensus size: 67
11308457 AATCCAAATC
* * *
11308467 GTTTTCATATTTTGACTTGTGGTTTAATCCTAGTCATTTTTTTAGATTTATGGTTTAATCCCTAT
1 GTTTTCATATTTTGACTGGTGGTTTAATCCTAGTCATTTTTTTAGACTTATGATTTAATCCCTAT
11308532 TG
66 TG
* * * * ** *
11308534 GTTTTCCTTTTTTGACTGGTGGTTTATTCCCTA-TCTTTTTTTTTTACTTGTGATTTAAT
1 GTTTTCATATTTTGACTGGTGGTTTAAT-CCTAGTCATTTTTTTAGACTTATGATTTAAT
11308593 TCTGATCATT
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
67 44 0.92
68 4 0.08
ACGTcount: A:0.16, C:0.13, G:0.14, T:0.57
Consensus pattern (67 bp):
GTTTTCATATTTTGACTGGTGGTTTAATCCTAGTCATTTTTTTAGACTTATGATTTAATCCCTAT
TG
Found at i:11309846 original size:16 final size:16
Alignment explanation
Indices: 11309825--11309860 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
11309815 TGACTCATGA
11309825 TTTAATTTCGATCATT
1 TTTAATTTCGATCATT
11309841 TTTAATTTCGATCATT
1 TTTAATTTCGATCATT
11309857 TTTA
1 TTTA
11309861 TCTTTTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.11, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTAATTTCGATCATT
Found at i:11309911 original size:87 final size:85
Alignment explanation
Indices: 11309756--11309928 Score: 204
Period size: 87 Copynumber: 2.0 Consensus size: 85
11309746 TGACTCCTGG
* * * * * *
11309756 TTTAATCTCGATCAATTTATTTATTGACTTGTGATTTAATCCCGGTCGTTTTCATTTTTTGACTC
1 TTTAATCTCGATCAATTTATTTATTGACTTGTGATTTAATCCCGATCATTTTCATTCTCTAACCC
11309821 ATGATTTAATTTCGATCATT
66 ATGATTTAATTTCGATCATT
* * * *
11309841 TTTAATTTCGATCATTTTTATCTTTTTGACTTGTGGTTTAATTCCC-ATCATTTTCATTCTCTAA
1 TTTAATCTCGATCA-ATTTAT-TTATTGACTTGTGATTTAA-TCCCGATCATTTTCATTCTCTAA
* *
11309905 CCCATGATTTAATTTTGGTCATT
63 CCCATGATTTAATTTCGATCATT
11309928 T
1 T
11309929 CATTTTCTGA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
85 13 0.18
86 5 0.07
87 51 0.70
88 4 0.05
ACGTcount: A:0.21, C:0.16, G:0.10, T:0.52
Consensus pattern (85 bp):
TTTAATCTCGATCAATTTATTTATTGACTTGTGATTTAATCCCGATCATTTTCATTCTCTAACCC
ATGATTTAATTTCGATCATT
Found at i:11310288 original size:137 final size:139
Alignment explanation
Indices: 11310108--11310453 Score: 348
Period size: 137 Copynumber: 2.5 Consensus size: 139
11310098 TTTTGTTTTG
* * * *
11310108 TTGACTCATAGTTTAATCCC-GATCATTTTCATTTTCTAACTCATGATTTAATCTTAGTTGTTTT
1 TTGACTCATGGTTTAATCCCAG-TCATTTTCATTTTTTGACTCATGGTTTAATCTTAGTTGTTTT
* *
11310172 CATTTTCTAACTCT-TGGTTTAATC-CTGATCATCTTT-ATTTTCTCACTCGTGGTTTAATCCTG
65 CATTTTCTAACT-TATAGTTTAATCTC-GATCATCTTTCATTTTCTCACTCGTGGTTTAATCCCG
* *
11310234 GTC-TTTTT-TT
128 ATCATTTTTAGT
* * ** *
11310244 TCTGACTCATGGTTTAATCCCAGTCATTTTCATTTTTTGTCTCATGGTTTAATATCGGTTGTTTC
1 T-TGACTCATGGTTTAATCCCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTTAGTTGTTTT
* ** * * * * *
11310309 CATTTTATGCCTTATAGTTTAATCTCGATCATTTTTCTTTTTCTGATTGGTGGTTTAATCCCGAT
65 CATTTTCTAACTTATAGTTTAATCTCGATCATCTTTCATTTTCTCACTCGTGGTTTAATCCCGAT
11310374 CATTTTTAGT
130 CATTTTTAGT
* * * * * *
11310384 TTGTCTCGTGGTTTAAT-CCAGTCGTTTTCATTTTTTGAGTTATGGTTTAATC-TCGATTGTTTT
1 TTGACTCATGGTTTAATCCCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTTAG-TTGTTTT
11310447 CATTTTC
65 CATTTTC
11310454 ATTTTTTGAC
Statistics
Matches: 170, Mismatches: 32, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
136 2 0.01
137 80 0.47
138 67 0.39
139 19 0.11
140 2 0.01
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (139 bp):
TTGACTCATGGTTTAATCCCAGTCATTTTCATTTTTTGACTCATGGTTTAATCTTAGTTGTTTTC
ATTTTCTAACTTATAGTTTAATCTCGATCATCTTTCATTTTCTCACTCGTGGTTTAATCCCGATC
ATTTTTAGT
Found at i:11310858 original size:103 final size:105
Alignment explanation
Indices: 11310660--11310926 Score: 291
Period size: 103 Copynumber: 2.6 Consensus size: 105
11310650 ATCTTTGTCA
* *
11310660 TTTTCATTTTCTAACTCATGATTTAATTCTAGTCATTTTCATTTTTTGACTTGTTG-TTT-AGTC
1 TTTTCATTTTCTGACTCATGATTTAATTCCAGTCATTTTCATTTTTTGACTTG-TGATTTAAGTC
* * * *
11310723 TTGATCATTTTCAATCTTACATTCTTGTTTAATTTTTATTG
65 TTGATCATTTTCAATCTTACACTCATGATTAATTTTGATTG
* * *
11310764 -TTTCATCTTT-TGACTCTTGATTTAATTCCATTCATTTTCATTTTTTGACTTGTGATTTAATTC
1 TTTTCAT-TTTCTGACTCATGATTTAATTCCAGTCATTTTCATTTTTTGACTTGTGATTTAAGTC
* *
11310827 TT-ATCATTTTC-AT-TTTCTGACTCATGATTAATTTTGGTTG
65 TTGATCATTTTCAATCTTAC--ACTCATGATTAATTTTGATTG
* * *
11310867 TTTTCATTTTCTGAGTCAT-AGTTTAA-TCCTAGTCATTTTTATTTTTTGACCTGTGATTTA
1 TTTTCATTTTCTGACTCATGA-TTTAATTCC-AGTCATTTTCATTTTTTGACTTGTGATTTA
11310927 TTCCTAGGCA
Statistics
Matches: 138, Mismatches: 16, Indels: 18
0.80 0.09 0.10
Matches are distributed among these distances:
101 3 0.02
102 4 0.03
103 79 0.57
104 52 0.38
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.57
Consensus pattern (105 bp):
TTTTCATTTTCTGACTCATGATTTAATTCCAGTCATTTTCATTTTTTGACTTGTGATTTAAGTCT
TGATCATTTTCAATCTTACACTCATGATTAATTTTGATTG
Found at i:11313282 original size:66 final size:68
Alignment explanation
Indices: 11313206--11313465 Score: 199
Period size: 69 Copynumber: 3.8 Consensus size: 68
11313196 TTTAACCTAG
* *
11313206 GTCATTTTCATTTTTTGACTCCTGGCTTAATCTTGATCATTTT-TTTT-T-ACTCATACTTTAAT
1 GTCATTTTCATTTTTTGACTCCTGGCTTAATCTCGATCATTTTATTTTCTAACTCATAATTTAAT
11313268 CTTA
66 -TTA
** * * *
11313272 GTCATTTTCATTTTTTGACTAGTGGTTTAATCTCGGTCATTTTCATTTTCTAACTCGTAATTTAA
1 GTCATTTTCATTTTTTGACTCCTGGCTTAATCTCGATCATTTT-ATTTTCTAACTCATAATTTAA
*
11313337 TTTT
65 TTTA
* * *** ** *
11313341 GATCGTTTTCATTTTTTGACTCGTTATTTAATC-C-AGTCATTTTTATTTTCTAACTTGTGATTT
1 G-TCATTTTCATTTTTTGACTCCTGGCTTAATCTCGA-TCA-TTTTATTTTCTAACTCATAATTT
11313404 AATTTCA
63 AATTT-A
* * ** * * *
11313411 ATCGTTTTCATTTTTTGACTTGTGGTTTAATGC-CTATCGTTTTCATTTTCTAACT
1 GTCATTTTCATTTTTTGACTCCTGGCTTAAT-CTCGATCATTTT-ATTTTCTAACT
11313466 TGTGGTTTAA
Statistics
Matches: 162, Mismatches: 21, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
66 38 0.23
68 4 0.02
69 61 0.38
70 58 0.36
71 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.10, T:0.54
Consensus pattern (68 bp):
GTCATTTTCATTTTTTGACTCCTGGCTTAATCTCGATCATTTTATTTTCTAACTCATAATTTAAT
TTA
Found at i:11314635 original size:18 final size:18
Alignment explanation
Indices: 11314612--11314647 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
11314602 ACCCTAATTG
11314612 TTTTTCATTTTCTGACTC
1 TTTTTCATTTTCTGACTC
*
11314630 TTTTTCATTTTTTGACTC
1 TTTTTCATTTTCTGACTC
11314648 ATAGTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.19, G:0.06, T:0.64
Consensus pattern (18 bp):
TTTTTCATTTTCTGACTC
Found at i:11314779 original size:67 final size:65
Alignment explanation
Indices: 11314631--11314809 Score: 211
Period size: 67 Copynumber: 2.7 Consensus size: 65
11314621 TTCTGACTCT
* *
11314631 TTTTCATTTTTTGACTCATAGTTTAATCTCAGTCATTTTTCTTTTTCTTACTCTTAATCTCGATT
1 TTTTCATTTTTTGACTCATGGTTTAATC-CAGTCATTTTTCTTTTTCTTACTCTTAATCTCGATC
*
11314696 G
65 A
* *
11314697 TTTTCATTTTCTGACTCATGGTTTAATCCAAGTCATTTTT-TTCTAATTCATTA-T-TTAATTTC
1 TTTTCATTTTTTGACTCATGGTTTAATCC-AGTCATTTTTCTT-T--TTC-TTACTCTTAATCTC
11314759 GATCA
61 GATCA
* *
11314764 TTTTCATTTTTTGACTCGTGGTTTAATCTTAGTCATTTTTCTTTTT
1 TTTTCATTTTTTGACTCATGGTTTAATC-CAGTCATTTTTCTTTTT
11314810 TTGACCTGTG
Statistics
Matches: 98, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
65 5 0.05
66 37 0.38
67 47 0.48
68 6 0.06
69 3 0.03
ACGTcount: A:0.19, C:0.16, G:0.08, T:0.56
Consensus pattern (65 bp):
TTTTCATTTTTTGACTCATGGTTTAATCCAGTCATTTTTCTTTTTCTTACTCTTAATCTCGATCA
Found at i:11314928 original size:103 final size:104
Alignment explanation
Indices: 11314744--11314980 Score: 245
Period size: 103 Copynumber: 2.3 Consensus size: 104
11314734 TTTTTCTAAT
* * * *
11314744 TCATTATTTAATT-TCGATCATTTTCATTTTTTGACTCGTGGTTTAATCTTAGTCATTTTTCTTT
1 TCATGATTTAATTCT-GGTCATTTTCA--TTCTGACTCGTGGTTTAATCCTAGTCATTTTTCTTT
* * * *
11314808 TTTTGACCTGTGTTTTAATCT-AGTTCA-TTTTAATTTTTGAAC
63 TTCTGACCTGGGGTTTAATCTCA-ATCATTTTTAATTTTTG-AC
* *
11314850 TCATGATTTAATTCTGGTCATTTTCATTCTGACTCGTGGTTTTATCCTGGTCATTTTTC-TTTTC
1 TCATGATTTAATTCTGGTCATTTTCATTCTGACTCGTGGTTTAATCCTAGTCATTTTTCTTTTTC
*
11314914 TGA-CTAGGGGTTTAATCTCAATCATTTTTAGTTTTTGAC
66 TGACCT-GGGGTTTAATCTCAATCATTTTTAATTTTTGAC
*
11314953 TCCTGATTTAA-TCTTGGTTC-TTTTCATT
1 TCATGATTTAATTC-TGG-TCATTTTCATT
11314981 TTTTAACTCA
Statistics
Matches: 113, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
102 4 0.04
103 43 0.38
104 43 0.38
106 22 0.19
107 1 0.01
ACGTcount: A:0.18, C:0.15, G:0.13, T:0.54
Consensus pattern (104 bp):
TCATGATTTAATTCTGGTCATTTTCATTCTGACTCGTGGTTTAATCCTAGTCATTTTTCTTTTTC
TGACCTGGGGTTTAATCTCAATCATTTTTAATTTTTGAC
Found at i:11314949 original size:138 final size:141
Alignment explanation
Indices: 11314764--11315083 Score: 314
Period size: 138 Copynumber: 2.3 Consensus size: 141
11314754 ATTTCGATCA
* * * * * ** * *
11314764 TTTTCATTTTTTGACTCGTGGTTTAATCTTAGTCATTTTTCTTTTTTTGAC-CTGTGTTTTAATC
1 TTTTCATTTTCTGACTAGGGGTTTAATCTCAATCATTTTTCAGTTTTTGACTC-CTGATTTAATC
*
11314828 -TAGTTCATTTTAATTTTTGAACTCATGATTTAAT-TCTGGTCATTTTCA-TTCTGACTCGTGGT
65 TTAGTTC-TTTTAATTTTTGAACTCATGATTTAATCT-TGATCATTTTCATTTCTGACTCGTGGT
11314890 TTTATCCTGGTCAT
128 TTTATCCTGGTCAT
11314904 TTTTC-TTTTCTGACTAGGGGTTTAATCTCAATCATTTTT-AGTTTTTGACTCCTGATTTAATCT
1 TTTTCATTTTCTGACTAGGGGTTTAATCTCAATCATTTTTCAGTTTTTGACTCCTGATTTAATCT
* * * * * *
11314967 TGGTTCTTTTCATTTTTTAACTCATGGTTTAATCTTGATTATTTTCATTTTTTGACTCGTGGTTT
66 TAGTTCTTTTAATTTTTGAACTCATGATTTAATCTTGATCATTTTCA-TTTCTGACTCGTGGTTT
* * *
11315032 AATCAC-AGACA-
130 TATC-CTGGTCAT
* *** *
11315043 TTTTCATTTTTTGACTCAATTGTTTAATCTCGATCATTTTT
1 TTTTCATTTTCTGACT-AGGGGTTTAATCTCAATCATTTTT
11315084 TCTCACTTAT
Statistics
Matches: 148, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
138 51 0.34
139 41 0.28
140 35 0.24
141 21 0.14
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.54
Consensus pattern (141 bp):
TTTTCATTTTCTGACTAGGGGTTTAATCTCAATCATTTTTCAGTTTTTGACTCCTGATTTAATCT
TAGTTCTTTTAATTTTTGAACTCATGATTTAATCTTGATCATTTTCATTTCTGACTCGTGGTTTT
ATCCTGGTCAT
Found at i:11315607 original size:54 final size:54
Alignment explanation
Indices: 11315525--11315635 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
11315515 TAATTTCGAA
* *
11315525 CGTTTTCATTTTTTAGCTCGTGGTTTAATCCTGATCATTTTTCTTTTTCTGACT
1 CGTTTTCATTTTTTAGCTCGTGGTTTAATCCTGACCATTTTTCTTTCTCTGACT
* *
11315579 CGTTTTCATTTTTT-GACTTGTGGTTTAATCCTGGCCATTTTTCTTTCTCTGACT
1 CGTTTTCATTTTTTAG-CTCGTGGTTTAATCCTGACCATTTTTCTTTCTCTGACT
11315633 CGT
1 CGT
11315636 GGATTAATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 1 0.02
54 51 0.98
ACGTcount: A:0.12, C:0.20, G:0.14, T:0.54
Consensus pattern (54 bp):
CGTTTTCATTTTTTAGCTCGTGGTTTAATCCTGACCATTTTTCTTTCTCTGACT
Found at i:11316600 original size:222 final size:223
Alignment explanation
Indices: 11316212--11316620 Score: 529
Period size: 222 Copynumber: 1.8 Consensus size: 223
11316202 AATCCCCATT
** * * *
11316212 GTTTTCATTTTCTGACTTGTGCTTTAATCTTGGTCATTTTTATTTTTTGACTCATGGTTTAATCC
1 GTTTTCATTTTCTGACTCATGCTTTAATCTTGATCATTTTCATTTTTTGACTCATGATTTAATCC
* * *
11316277 TGGTCAATTTCAATTTTTGATTCGTGGTTTAATCTCGGTCGGTTTTCATTGTCTAACTCATTGTT
66 TGATCAATTTCAATTTTTGACTCATGGTTTAATCTCGGTCGGTTTTCATTGTCTAACTCATTGTT
* * * * ** *
11316342 TAATCTCAATCGTTTTCATTTTTTTACTTGTGGTTTAACCCAGGTCA-TTTCATTTTTGTTTTTA
131 TAATCCCAATCATTTTCATTTTCTGACTCATGGTTTAACCCAAGTCATTTTCATTTTTGTTTTTA
11316406 TTTTCTGACTTATTGTTTAAACTGGGTC
196 TTTTCTGACTTATTGTTTAAACTGGGTC
* *
11316434 GTTTTCAATTTT-TGACTCATGGTTTAATTTTGATCATTTTCATTTTTTGACTCATGATTTAATC
1 GTTTTC-ATTTTCTGACTCATGCTTTAATCTTGATCATTTTCATTTTTTGACTCATGATTTAAT-
* * * * *
11316498 CCT-ATCATTTTCATTTTTTGACTCATGGTTTAATCTTGGTTGTTTTTCATTGTCTAACTCATTG
64 CCTGATCAATTTCAATTTTTGACTCATGGTTTAATCTCGGTCGGTTTTCATTGTCTAACTCATTG
* * * *
11316562 -TTAGTTCCCAGTCATTTTCATTTTCTGACTCATGGTTTAATCTAAGTCATTTTCATTTT
129 TTTA-ATCCCAATCATTTTCATTTTCTGACTCATGGTTTAACCCAAGTCATTTTCATTTT
11316621 CTAACTTGTG
Statistics
Matches: 157, Mismatches: 26, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
221 3 0.02
222 137 0.87
223 17 0.11
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (223 bp):
GTTTTCATTTTCTGACTCATGCTTTAATCTTGATCATTTTCATTTTTTGACTCATGATTTAATCC
TGATCAATTTCAATTTTTGACTCATGGTTTAATCTCGGTCGGTTTTCATTGTCTAACTCATTGTT
TAATCCCAATCATTTTCATTTTCTGACTCATGGTTTAACCCAAGTCATTTTCATTTTTGTTTTTA
TTTTCTGACTTATTGTTTAAACTGGGTC
Found at i:11316666 original size:13 final size:13
Alignment explanation
Indices: 11316648--11316674 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11316638 CCAAGTCGTT
11316648 TTCATTTTCTAAC
1 TTCATTTTCTAAC
11316661 TTCATTTTCTAAC
1 TTCATTTTCTAAC
11316674 T
1 T
11316675 CATGGTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (13 bp):
TTCATTTTCTAAC
Found at i:11316698 original size:48 final size:48
Alignment explanation
Indices: 11316613--11316709 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 48
11316603 CTAAGTCATT
** * * *
11316613 TTCATTTTCTAACTTGTGGTTTAACCCAAGTCGTTTTCATTTTCTAAC
1 TTCATTTTCTAACTCATGGTTTAAACCAAGTCATTTTCACTTTCTAAC
*
11316661 TTCATTTTCTAACTCATGGTTTAATACTAA-TCATTTTCACTTTCTAAC
1 TTCATTTTCTAACTCATGGTTTAA-ACCAAGTCATTTTCACTTTCTAAC
11316709 T
1 T
11316710 CATGGTTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 39 0.93
49 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (48 bp):
TTCATTTTCTAACTCATGGTTTAAACCAAGTCATTTTCACTTTCTAAC
Found at i:11318948 original size:68 final size:69
Alignment explanation
Indices: 11318868--11319004 Score: 170
Period size: 68 Copynumber: 2.0 Consensus size: 69
11318858 TAGTTTATTT
11318868 CCTATCATTTTCATTCTT-TGACTCAAGATTTAATTTCAATCATTTT-TTTTCTAACTCGTGATT
1 CCTATCATTTTCATT-TTCTGACTCAAGATTTAATTTCAATCATTTTATTTTCTAACTCGTGATT
11318931 TAATA
65 TAATA
* ** * *** *
11318936 CCTATCATTTTCATTTTCTTACTCGTGATTTGATTTTGGTCATTTTCATTTTCTAACTCGTGGTT
1 CCTATCATTTTCATTTTCTGACTCAAGATTTAATTTCAATCATTTT-ATTTTCTAACTCGTGATT
11319001 TAAT
65 TAAT
11319005 CTTGGTCGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 2 0.03
68 36 0.62
70 20 0.34
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.52
Consensus pattern (69 bp):
CCTATCATTTTCATTTTCTGACTCAAGATTTAATTTCAATCATTTTATTTTCTAACTCGTGATTT
AATA
Found at i:11321651 original size:66 final size:66
Alignment explanation
Indices: 11321577--11321700 Score: 169
Period size: 66 Copynumber: 1.9 Consensus size: 66
11321567 GTCATTTTCA
* * **
11321577 TTTTTTGACCCATGGTTTAATCGCGATCGTTTTC-TTTTTCTAACTTGTGGTTTAATCTTAGTTA
1 TTTTTTGACCCATGGCTTAATCCCGATCGTTTTCATTTTT-TAACTCATGGTTTAATCTTAGTTA
11321641 TT
65 TT
* * *
11321643 TTTTTTGACTCGTGGCTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCT
1 TTTTTTGACCCATGGCTTAATCCCGATCGTTTTCATTTTTTAACTCATGGTTTAATCT
11321701 CGATCTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
66 45 0.90
67 5 0.10
ACGTcount: A:0.16, C:0.17, G:0.15, T:0.52
Consensus pattern (66 bp):
TTTTTTGACCCATGGCTTAATCCCGATCGTTTTCATTTTTTAACTCATGGTTTAATCTTAGTTAT
T
Found at i:11321836 original size:206 final size:206
Alignment explanation
Indices: 11321437--11321948 Score: 480
Period size: 206 Copynumber: 2.5 Consensus size: 206
11321427 TCATTTTTCA
* * * * *
11321437 TTTTTTGACTCATGGTTTAGTCCCGATTGTTTTCTTTTTTTGACTCATAGTTTAATCTCGGTCAT
1 TTTTTTGACTCATGGCTTAATCCCGATCGTTTTCATTTTTTGACTCATAGTTTAATCTCGATCAT
* * * * *
11321502 TTTCCTTTTTTGACTCATGGTTTAATCTAAGTCATTTTTATTTTTTGACCCGTAATTTAATAATA
66 TTTCATTTTTTGACTCATGATTTAATCCAAGTCATTTTCATTTTTTGACCAGTAATTTAATAATA
** * * ***
11321567 GTCATTTTCATTTTTTGACCCATGGTTTAATCGCGATCGTTTTCTTTTTCTAACTTGTGGTTTAA
131 GTCATTTTCATTTTTTGACCCATGGTTTAATCAAGATCATTTTCATTTTCTAACGCATGGTTTAA
11321632 TCTTAGTTATT
196 TCTTAGTTATT
* * *
11321643 TTTTTTGACTCGTGGCTTAATCCCGATCGTTTTCATTTTTTGACTCATGGTTTAATCTCGATCTT
1 TTTTTTGACTCATGGCTTAATCCCGATCGTTTTCATTTTTTGACTCATAGTTTAATCTCGATCAT
* * ** * ** *
11321708 TTTCATTTTTTGACTCGTGATTTAATCC-CGATTGTTTTCACTTTTTTG-CTAGTGGTTTAAT-C
66 TTTCATTTTTTGACTCATGATTTAATCCAAG-TCATTTTCA-TTTTTTGACCAGTAATTTAATAA
* * * *
11321770 TCGATCATTTTCATTTTTTGACTCATGGTTTAATCAAGGTCATTTTCATTTTCTGACGCATGGTT
129 TAG-TCATTTTCATTTTTTGACCCATGGTTTAATCAAGATCATTTTCATTTTCTAACGCATGGTT
*
11321835 TAATTCTGATCGTT-TT
193 TAA-TCT--TAGTTATT
* * * * * * * * * *
11321851 CATTTTCTGAATTATGGTTTAATTCTGATCATTTTTCTTTTTTTGACT-AGTGGTTTAATC-CCA
1 --TTTTTTGACTCATGGCTTAATCCCGATC-GTTTTCATTTTTTGACTCA-TAGTTTAATCTCGA
11321914 GTCATTTTCATTTTTTGACTCATTG-TTTAATCCAA
62 -TCATTTTCATTTTTTGACTCA-TGATTTAATCCAA
11321949 TTCGGGGTTG
Statistics
Matches: 247, Mismatches: 46, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
205 3 0.01
206 150 0.61
207 10 0.04
208 2 0.01
209 4 0.02
210 24 0.10
211 52 0.21
212 2 0.01
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (206 bp):
TTTTTTGACTCATGGCTTAATCCCGATCGTTTTCATTTTTTGACTCATAGTTTAATCTCGATCAT
TTTCATTTTTTGACTCATGATTTAATCCAAGTCATTTTCATTTTTTGACCAGTAATTTAATAATA
GTCATTTTCATTTTTTGACCCATGGTTTAATCAAGATCATTTTCATTTTCTAACGCATGGTTTAA
TCTTAGTTATT
Found at i:11323256 original size:125 final size:125
Alignment explanation
Indices: 11323033--11323261 Score: 289
Period size: 125 Copynumber: 1.8 Consensus size: 125
11323023 TCTTAACTGG
* ** *
11323033 TGGTTTAATTTTGATCATTTTCATTTTCTGACTTGTAATTTAATCCTGATCGTTTTCATTTTCAA
1 TGGTTTAATCTTGATCATTTTCATTTTCTGACTCATAATTTAATCCTGATCGTTTTCAATTTCAA
* * * * *
11323098 ACTTGTGGTTTAATCTCAATCATTTTTATTTTTTGACACATGATTCAATTTTGGTTGTTA
66 ACTCGTGATTTAACCCCAATCATTTTCATTTTTTGACACATGATTCAATTTTGGTTGTTA
* ** * *
11323158 TGGTTTAATCTTGATCATTTTCATTTTTTGACTCATGGTTTAATCCT-AGTCATTTTTTAATTTC
1 TGGTTTAATCTTGATCATTTTCATTTTCTGACTCATAATTTAATCCTGA-TC-GTTTTCAATTTC
* *
11323222 TAACTCGTGATTTAACCCCCATCATTTTCATTTTTTGACA
64 AAACTCGTGATTTAACCCCAATCATTTTCATTTTTTGACA
11323262 TAGGGTTTAA
Statistics
Matches: 86, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
124 1 0.01
125 43 0.50
126 42 0.49
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (125 bp):
TGGTTTAATCTTGATCATTTTCATTTTCTGACTCATAATTTAATCCTGATCGTTTTCAATTTCAA
ACTCGTGATTTAACCCCAATCATTTTCATTTTTTGACACATGATTCAATTTTGGTTGTTA
Found at i:11323902 original size:19 final size:19
Alignment explanation
Indices: 11323875--11323934 Score: 54
Period size: 17 Copynumber: 3.3 Consensus size: 19
11323865 CTTGATCATT
*
11323875 TTTATTTTTTGACTCGTGA
1 TTTAATTTTTGACTCGTGA
* *
11323894 TTTAA-TTTTGA-TTGT-T
1 TTTAATTTTTGACTCGTGA
* *
11323910 TTTAGTTTTTGACTCGTGG
1 TTTAATTTTTGACTCGTGA
11323929 TTTAAT
1 TTTAAT
11323935 CTCGATTGAT
Statistics
Matches: 31, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
16 4 0.13
17 9 0.29
18 9 0.29
19 9 0.29
ACGTcount: A:0.17, C:0.07, G:0.17, T:0.60
Consensus pattern (19 bp):
TTTAATTTTTGACTCGTGA
Found at i:11324593 original size:17 final size:17
Alignment explanation
Indices: 11324573--11324624 Score: 54
Period size: 17 Copynumber: 3.0 Consensus size: 17
11324563 TTAATTGCTG
11324573 TCATTTTATTTTTTGAC
1 TCATTTTATTTTTTGAC
*
11324590 TCATGGTTTA-ATTTTGA-
1 TCAT--TTTATTTTTTGAC
11324607 TCATTTTTATTTTTTGAC
1 TCA-TTTTATTTTTTGAC
11324625 ATGAGGTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
16 4 0.14
17 13 0.46
18 7 0.25
19 4 0.14
ACGTcount: A:0.19, C:0.10, G:0.10, T:0.62
Consensus pattern (17 bp):
TCATTTTATTTTTTGAC
Found at i:11332541 original size:17 final size:18
Alignment explanation
Indices: 11332514--11332547 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
11332504 CATTTTCATT
11332514 TTCTGATTCATGTTTTAA
1 TTCTGATTCATGTTTTAA
*
11332532 TTCT-ATTCATTTTTTA
1 TTCTGATTCATGTTTTA
11332548 TCTCTAACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.21, C:0.12, G:0.06, T:0.62
Consensus pattern (18 bp):
TTCTGATTCATGTTTTAA
Found at i:11333844 original size:207 final size:208
Alignment explanation
Indices: 11333605--11333997 Score: 492
Period size: 207 Copynumber: 1.9 Consensus size: 208
11333595 ATCCCGATCG
* **
11333605 TTTTCATTTTTTGACTCATGGTTTAATCTCGATTGCTTT-TATTTTCTGACTCGTGGTTTAACTT
1 TTTTCATTTTTTGACTCATGGTTTAATCTCGATTG-TTTCCATTTTCTGACTCGTAATTTAACTT
* * * *
11333669 TGGTCA-TTTTCATTTTTTGACTTGTGGTTTAATCCCGGTCATTTTTTACTTCTTGACTTGTGGT
65 TGGTCATTTTTCATTTTTTGACTCGTGGTTTAATCCCGATCA-TTTTGACTTCTTGACTTGTAGT
** *
11333733 TT-AACCTCGTTCATTTTCT-TTTTCTGACTTATGGTTTAATCCC-AGTCATTTTCATTTCTTGT
129 TTAAACC-CAATC-TTTTCTATTTTCTAACTTATGGTTTAATCCCAAGTCATTTTCATTTCTTGT
11333795 CGTTTAATCTTAGTCAA
192 CGTTTAATCTTAGTCAA
* * * *
11333812 TTTTCATTTTCTT-ACTCATGGTTTAATCTCGATTGTTTCCATTTTTTTACTTGTAATTTAATTT
1 TTTTCATTTT-TTGACTCATGGTTTAATCTCGATTGTTTCCATTTTCTGACTCGTAATTTAACTT
* * * * *
11333876 TTGTCATTTTTTATTTTTTGACTCGTGGTTTAATCCTGATCATTTTGATTTTTTGACTTGTAGTT
65 TGGTCATTTTTCATTTTTTGACTCGTGGTTTAATCCCGATCATTTTGACTTCTTGACTTGTAGTT
* * * *
11333941 TAAACCCAATCTTTTTTATTTTCTAACTTGTGGTTTAATCCCAATTGATTTTCATTT
130 TAAACCCAATCTTTTCTATTTTCTAACTTATGGTTTAATCCCAAGTCATTTTCATTT
11333998 TCTAACTAGT
Statistics
Matches: 157, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
206 8 0.05
207 100 0.64
208 49 0.31
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (208 bp):
TTTTCATTTTTTGACTCATGGTTTAATCTCGATTGTTTCCATTTTCTGACTCGTAATTTAACTTT
GGTCATTTTTCATTTTTTGACTCGTGGTTTAATCCCGATCATTTTGACTTCTTGACTTGTAGTTT
AAACCCAATCTTTTCTATTTTCTAACTTATGGTTTAATCCCAAGTCATTTTCATTTCTTGTCGTT
TAATCTTAGTCAA
Found at i:11334724 original size:20 final size:20
Alignment explanation
Indices: 11334695--11334733 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11334685 ATTCATTTTA
11334695 ATTTTCTGACTCGTGGTTTC
1 ATTTTCTGACTCGTGGTTTC
* *
11334715 ATTTTTTGACTTGTGGTTT
1 ATTTTCTGACTCGTGGTTT
11334734 AATCCTAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.13, G:0.21, T:0.56
Consensus pattern (20 bp):
ATTTTCTGACTCGTGGTTTC
Found at i:11334728 original size:90 final size:90
Alignment explanation
Indices: 11334621--11334796 Score: 223
Period size: 90 Copynumber: 2.0 Consensus size: 90
11334611 ACTCGGTCAT
* * * *
11334621 TTTCACTTTTTGACTTGTGATTTAAT-TTCAGTTATTTTCATTTT-TTGACTCATGGTTTAATCC
1 TTTCACTTTTTGACTTGTGATTTAATCCT-AGTCATTTTCATTTTCATAACTCAT-GTTTAATCC
11334684 C-ATTCATTTTAATTTTCTGACTCGTGG
64 CTA-TCATTTTAATTTTCTGACTCGTGG
* * *
11334711 TTTCATTTTTTGACTTGTGGTTTAATCCTAGTCATTTTTATTTTCATAACTCATGTTTAATCCCT
1 TTTCACTTTTTGACTTGTGATTTAATCCTAGTCATTTTCATTTTCATAACTCATGTTTAATCCCT
* *
11334776 ATCATTTTCATTTTTTGACTC
66 ATCATTTTAATTTTCTGACTC
11334797 ATGATTTAAT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
90 65 0.88
91 9 0.12
ACGTcount: A:0.19, C:0.16, G:0.10, T:0.54
Consensus pattern (90 bp):
TTTCACTTTTTGACTTGTGATTTAATCCTAGTCATTTTCATTTTCATAACTCATGTTTAATCCCT
ATCATTTTAATTTTCTGACTCGTGG
Found at i:11335123 original size:211 final size:210
Alignment explanation
Indices: 11334741--11335123 Score: 456
Period size: 211 Copynumber: 1.8 Consensus size: 210
11334731 TTTAATCCTA
*
11334741 GTCATTTTTATTTTCATAACTCATGTTTAATCCCTATCATTTTCATTTTTTGACTCATGATTTAA
1 GTCATTTTTATTTTCATAACTCATGTTTAATCCCTATCATTTTCATTTTTTGACTCAAGATTTAA
* * ** * ** * *
11334806 TCTCGATCATTTTCATTTTTTGATTTTTGGTTTAGTCCTGGACGCTTTTCATTTTTTGACACCTG
66 TCTCGATCATTTTCATTTTTTAACTCGTGGTTTAATCCTCAACGCTTTTCATTTTCTGACACATG
* **
11334871 GTTTAATCCCAGTCGTTTTCATTTTTTATCTTCTAGTTTAATGCTAGTAAATTCATTCTCTGACT
131 GTTTAATCCCAGTCGTTTTCATTTTTTAACTTAGAGTTTAATGCTAGTAAATTCATTCTCTGACT
11334936 CTTGGTTAAATCTTG
196 CTTGGTTAAATCTTG
* * **
11334951 GTCATTTTTCATTTTC-TAACTCCTAGTTTTATCCC-AGTTGTTTTCATTTTTT-AGCTCAAGAT
1 GTCATTTTT-ATTTTCATAACTCAT-GTTTAATCCCTA-TCATTTTCATTTTTTGA-CTCAAGAT
*
11335013 TTAATCTC-AGTCATTTTCATTTTTTAACTCGTGGTTTAATCC-CAATCGTTTTTCATTTTCTGA
62 TTAATCTCGA-TCATTTTCATTTTTTAACTCGTGGTTTAATCCTCAA-CGCTTTTCATTTTCTGA
* * *
11335076 CTCATGGTTTAATCCCTA-TTGTTTTCA-TTTTTAGACTTAGGGTTTAAT
125 CACATGGTTTAATCCC-AGTCGTTTTCATTTTTTA-ACTTAGAGTTTAAT
11335124 CTCAATCGTT
Statistics
Matches: 144, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
210 26 0.18
211 117 0.81
212 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (210 bp):
GTCATTTTTATTTTCATAACTCATGTTTAATCCCTATCATTTTCATTTTTTGACTCAAGATTTAA
TCTCGATCATTTTCATTTTTTAACTCGTGGTTTAATCCTCAACGCTTTTCATTTTCTGACACATG
GTTTAATCCCAGTCGTTTTCATTTTTTAACTTAGAGTTTAATGCTAGTAAATTCATTCTCTGACT
CTTGGTTAAATCTTG
Found at i:11336458 original size:211 final size:200
Alignment explanation
Indices: 11335971--11336459 Score: 470
Period size: 211 Copynumber: 2.4 Consensus size: 200
11335961 AATCCTGGTA
*
11335971 ATTTTTATT-TACTGACTCGTGATTTAATTTTAGTATTTTTCATTTTTTGACTCGA-AGTTTAAT
1 ATTTTTATTCT-CTGACTCGTGATTTAATTTTAGTA-TTTTCATTTTCTGACTC-ATAGTTTAAT
* *
11336034 CTT-AGTCATTTTTCATTTTTTTGACTCATTAGGTTGTTTTCATTTCTAACTCATGATTTAATTT
63 -TTCA-TCATTTTTCATTTTTTTGACTCATTAGGTTATTTTCATTTCTAACTCATGATTTAATTC
* * ** * ** * * *
11336098 TGATCATTTTCATTTTTTGATTTGAAGTTTACTCTGGGTCGTTTTCATTTTCTAAATCGTGGTTT
126 TGATCATTTTCATTTTCTGACTCAAAGTTTAATCTGAATCATTTTCATTTTCTAAATCATAGTTT
*
11336163 AATTCTATTT
191 AATTCTATTC
* * * * * * * **
11336173 GTTTTTATACTTTGACTTGTGATTTAATTTCAGTTATTTTTATTTTCTGACTCATGGTTTAATCC
1 ATTTTTATTCTCTGACTCGTGATTTAATTTTAG-TATTTTCATTTTCTGACTCATAGTTTAATTT
* * * *
11336238 CGATCATTTTTCA-TTTTTTGACTTGTAGTTTAATCATGTTCATTTTCATTTGTTGACTCATGAT
65 C-ATCATTTTTCATTTTTTTGAC-T-CA---T--T-AGGTT-ATTTTCATTT-CTAACTCATGAT
*
11336302 TTAATTCCT-ATCATTTTCATTTTCTGACTCAAAGTTTAATCCT-AATCATTTTCATTTTCTAAT
119 TTAATT-CTGATCATTTTCATTTTCTGACTCAAAGTTTAAT-CTGAATCATTTTCATTTTCTAAA
11336365 TCATAGTTTAATT-TCATTC
182 TCATAGTTTAATTCT-ATTC
*
11336384 ATTTTTATTCTCTGACTCATGATTTAATTTTAGTCATTTTCATTTTCTGACTCATAGTTTAATTT
1 ATTTTTATTCTCTGACTCGTGATTTAATTTTAGT-ATTTTCATTTTCTGACTCATAGTTTAATTT
11336449 CATTCATTTTT
65 CA-TCATTTTT
11336460 ATTCTCTAAC
Statistics
Matches: 229, Mismatches: 38, Indels: 31
0.77 0.13 0.10
Matches are distributed among these distances:
201 10 0.04
202 59 0.26
203 5 0.02
206 1 0.00
208 1 0.00
209 4 0.02
210 12 0.05
211 134 0.59
212 3 0.01
ACGTcount: A:0.22, C:0.14, G:0.10, T:0.55
Consensus pattern (200 bp):
ATTTTTATTCTCTGACTCGTGATTTAATTTTAGTATTTTCATTTTCTGACTCATAGTTTAATTTC
ATCATTTTTCATTTTTTTGACTCATTAGGTTATTTTCATTTCTAACTCATGATTTAATTCTGATC
ATTTTCATTTTCTGACTCAAAGTTTAATCTGAATCATTTTCATTTTCTAAATCATAGTTTAATTC
TATTC
Found at i:11337064 original size:140 final size:137
Alignment explanation
Indices: 11336208--11340295 Score: 461
Period size: 141 Copynumber: 29.2 Consensus size: 137
11336198 AATTTCAGTT
* *
11336208 ATTTTTATTTTCTGACTCATGGTTTAATCCCGATCATTTTTCATTTTTTGACTTGTAGTTTAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCCCG-TCA-TTTTCATTTTTTGACTTG-A-TTTAATC
* * * * * * *
11336272 CATGTTCATTTTCATTTGT-TGACTCA-TGATTTAATTCCTA-TCATTTTCATTTTCTGACTCAA
62 CCTG-TCATTTTCATTT-TCTAACT-AGTGGTTTAA-TCCTAGTCAATTTAATTTTCTTACTCAT
* *
11336334 AGTTTAATCCTAATC
123 GGTTTAATCCTGATC
* * * * * ** * * * *
11336349 ATTTTCATTTTCTAATTCATAGTTTAATTTCATTCATTTTTATTCTCTGACTCATGATTTAAT-T
1 ATTTTCATTTTTTGACTCATGGTTTAA-TCCCGTCATTTTCATTTTTTGACT--TGATTTAATCC
* * * * * * * * * *
11336413 TTAGTCATTTTCATTTTCTGACTCA-TAGTTTAAT-TTCATTCATTTTTATTCTCTAACTCATGA
63 CT-GTCATTTTCATTTTCTAACT-AGTGGTTTAATCCT-AGTCAATTTAATTTTCTTACTCATGG
* * * *
11336476 TTGAAT-CAGCTG
125 TTTAATCCTGATC
* * * * * * *
11336488 GTTTTCATTTTTTGACTCATGATTTAAGCCTGGTCATTTTTATTTTTTGACTCATGATTAAATCT
1 ATTTTCATTTTTTGACTCATGGTTTAATCC-CGTCATTTTCATTTTTTGACT--TGATTTAATCC
** * * * * * * **
11336553 CAATTATTTTCATTTTCTGAC-ACGTGATTTAAT-CTCGCTCATTTTTATTTT-TTGACTTGTGG
63 CTGTCATTTTCATTTTCTAACTA-GTGGTTTAATCCTAG-TCAATTTAATTTTCTT-ACTCATGG
* *
11336615 ATTAATCTCGGAT-
125 TTTAATC-CTGATC
* * * ** * ** * * *
11336628 GTTTTCATTTTCTGACCCATGGTTTAATCTCAATCGTTTTTGTTTTCTT-ACCCATGGTATAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAATC-CCGTCATTTTCATTTT-TTGA--CTTGATTTAATC
* * * * * *** *
11336691 CTTAGTCGTTCTCATTTTCTGACTTGTGGTTTAATCCTAGTGGTTTTTATTTT-TTGACTCATGG
62 CCT-GTCATTTTCATTTTCTAACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTT-ACTCATGG
* *
11336755 TTTAATCCCGATA
125 TTTAATCCTGATC
* ** *
11336768 ATTTTTATTTTTTGACTCATGGTTTAATCCCAGTCATTTTTCATTTTTTGAAGTGGTTTAATCCC
1 ATTTTCATTTTTTGACTCATGGTTTAATCCC-GTCA-TTTTCATTTTTTGACTTGATTTAATCCC
* * *
11336833 TGTCATTTTCATTTTCTAACTAGTGGTTTAATCTTAGTCAATTTAATTTTCTTACTCATGATTTT
64 TGTCATTTTCATTTTCTAACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTTACTCATGGTTTA
*
11336898 ATCCTAATC
129 ATCCTGATC
* *
11336907 -GTTTCAGGTTTTTTGACTTATGGTTTAATCCCTGTCATTTTCATTTTTTGACTTGCAATTTAAT
1 ATTTTCA--TTTTTTGACTCATGGTTTAATCCC-GTCATTTTCATTTTTTGACTTG--ATTTAAT
* ** * * * * **
11336971 CCTTGTTGTTTTCATTTT-TCGACTCGTGGTTTAGTCCTAGTCACTTTCAATTTT-TTACTTGTG
61 CCCTGTCATTTTCATTTTCT-AACTAGTGGTTTAATCCTAGTCAATTT-AATTTTCTTACTCATG
*
11337034 GTTTAATCTTGATC
124 GTTTAATCCTGATC
* * * *
11337048 ATTTTCATTTTCTGACTCATAGTTTAAAT-TCGATCATTTTCATTTTTTAACTTG-TGGCTTAAT
1 ATTTTCATTTTTTGACTCATGGTTT-AATCCCG-TCATTTTCATTTTTTGACTTGAT---TTAAT
* * * * * * ** *
11337111 -CCTGGTCGATTTTTATTTTTTGACTCGTAG-TTAAT-CTTGATCGTTTTCATTTT-TTGACTCA
61 CCCT-GTC-ATTTTCATTTTCTAACTAGTGGTTTAATCCTAG-TCAATTTAATTTTCTT-ACTCA
* * * *
11337172 TGATTTAATTCAGGTC
122 TGGTTTAATCCTGATC
* * * * *
11337188 ATTTGTTATTTTTTGACTTATGGTTTAATCTCGATCATTTTCATCTTTTGACTCATGGTTTAATC
1 ATTT-TCATTTTTTGACTCATGGTTTAATCCCG-TCATTTTCATTTTTTGACT--TGATTTAATC
* * * ** * * * * * **
11337253 CCAGTCGATTTTCACTTTT-TGACTCGCAGTTAAAT-CTCAGTCATTTTCATTTTCTAATTTGTG
62 CCTGTC-ATTTTCA-TTTTCTAACTAGTGGTTTAATCCT-AGTCAATTTAATTTTCTTACTCATG
* ** *
11337316 ATTTAATTTTGATTG
124 GTTTAATCCTGA-TC
* ** * ** * *
11337331 TTTTTCATTTTTTTGACTTTTAGTTTAATCTCTATCATTTTCATTTTCTAACTCAT-AGTTT-AT
1 ATTTTCA-TTTTTTGACTCATGGTTTAATC-CCGTCATTTTCATTTTTTGACT--TGA-TTTAAT
* * ** * * * ** * * *
11337394 TCTTGGTTTTTTTCATTTTTTGACTTA-TGATTTAAT--TATGATCTTTTTCATTTTCTAACTCG
61 CCCT-GTCATTTTCATTTTCTAAC-TAGTGGTTTAATCCTA-G-TCAATTTAATTTTCTTACTCA
*
11337456 TGATTTAAT-C----C
122 TGGTTTAATCCTGATC
* * * * ** * * *
11337467 -TTGTCATTTTTTGACTCGTGGTATAATCCTGGTCGCTTTCATTTTTTGGCTTGTGGTTTAAT-A
1 ATTTTCATTTTTTGACTCATGGTTTAATCC-CGTCATTTTCATTTTTTGAC-T-TGATTTAATCC
* ** * * *** * ** **
11337530 TTGGTTGTTTTCATTTTTTGACTCA-TGGTTTAATCCTAGTTGTTTTCATTTT-TTGACTTGTTA
63 CT-GTCATTTTCATTTTCTAACT-AGTGGTTTAATCCTAGTCAATTTAATTTTCTT-ACTCATGG
* *
11337593 TTTAAAT-TTAATC
125 TTT-AATCCTGATC
* * * * * *
11337606 ATTTTCATTTTTAGACTTATGGTTTAATCTCGATCATTTTTCATTTTCTAACTCATGGTTTAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCCCG-TCA-TTTTCATTTTTTGACT--TGATTTAATC
* * * * ** * * * *
11337670 CCTGGTCATTTTTATTTTCTGACTCGTGGCTTAATTTTAGTCATTTTCATTTTCTTACTCGTGTT
62 CCT-GTCATTTTCATTTTCTAACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTTACTCATGGT
* *
11337735 TTAATCTTGGTC
126 TTAATCCTGATC
* ** ** * *
11337747 GATTTTCATTTTTTGACTCATGCTTTAATCTTGATTGTTTTTA-TTTTTGACTTATGGTTTAAT-
1 -ATTTTCATTTTTTGACTCATGGTTTAATCCCG-TCATTTTCATTTTTTGAC-T-TGATTTAATC
* * ** * * * * ** * *
11337810 TCTAGTCGTTTTTTTTTTCTAGCTCGTGTTTTAATCCTAGTCATTTTCTTTTTCTCAATCATGGT
62 CCT-GTCATTTTCATTTTCTAACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTTACTCATGGT
*
11337875 TTAATTCC-AATC
126 TTAA-TCCTGATC
* * * * * * ** * *
11337887 ATTTTTATTCTCTGACTCATGATTTAGTCCCGATCATTTTTCAATTCCTAACTCATGGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCCCG-TCA-TTTTCATTTTTTGACT--TGATTTAATC
** * * * * * * *
11337952 TATGTCATTTTCATTTTCTGACCCA-TGATATATAAT-CTCGATCATTTTCATTTTCTGACTCAT
62 CCTGTCATTTTCATTTTCT-AACTAGTGGT-T-TAATCCTAG-TCAATTTAATTTTCTTACTCAT
* * *
11338015 GGTTTAATGCTGGTT
123 GGTTTAATCCTGATC
* * * *** * *
11338030 GTTTTTATTTTCTGACTCATGGTTTAACTTTGGTCATTTTCATTTTTAGACTCATGGTTTAATCC
1 ATTTTCATTTTTTGACTCATGGTTTAA-TCCCGTCATTTTCATTTTTTGACT--TGATTTAATCC
* ** * * * * * * *
11338095 CGGTTGTTTTCATTTTTTGACTTA-TGGTTTAAT-TTTGATCATTTTCATTTT-TTGACTCATGT
63 CTGTCATTTTCATTTTCTAAC-TAGTGGTTTAATCCTAG-TCAATTTAATTTTCTT-ACTCATGG
**
11338157 TTTAATCCCAATC
125 TTTAATCCTGATC
* ** *
11338170 GATTTTCATTTTTTGACTCATGGTTTAGTCCCAGTTGTTTTCATTTTCTT-ACTCATGGTTTAAT
1 -ATTTTCATTTTTTGACTCATGGTTTAATCCC-GTCATTTTCATTTT-TTGACT--TGATTTAAT
* * * * * ** ** *
11338234 TCCAGTCCTTTT-ATTTTCTAGCTTGT-GTGTTAAT-CT-GATCGTTTTCTTTTTCTCACTCATG
61 CCCTGTCATTTTCATTTTCTAACTAGTGGT-TTAATCCTAG-TCAATTTAATTTTCTTACTCATG
* *
11338295 GTTTAATTCT-AGTT
124 GTTTAATCCTGA-TC
* * * * * * * ** * *
11338309 GTTTTAATTCTCTAACTCATGATTGAATCCTAATCATTTTTCATTTCTTGACTCATGGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCC-CGTCA-TTTTCATTTTTTGACT--TGATTTAATC
** * * * * * *
11338374 CCCATCATTTTCATCTTT-TGACTCA-TGATTTAAT-CTCGATC-GTTTCATTTT-TTGACTTAT
62 CCTGTCATTTTCAT-TTTCTAACT-AGTGGTTTAATCCTAG-TCAATTTAATTTTCTT-ACTCAT
* *
11338434 GGTTTAAT-GTCAGTC
123 GGTTTAATCCTGA-TC
* * * * *
11338449 ATTTTCATTTTCT-A-ACATGTGATTTAATCCAGTCGTTTTCATTTTCTAATGA-ATGATTTAAT
1 ATTTTCATTTTTTGACTCATG-G-TTTAATCCCGTCATTTTCATTTT-T--TGACTTGATTTAAT
* * * * **
11338511 -CTTGATCATTTTCATTTTC-AGACTCA-TGGTTTAATTCTAGTCATTTTTATTTTC-TAGCTTG
61 CCCTG-TCATTTTCATTTTCTA-ACT-AGTGGTTTAATCCTAGTCAATTTAATTTTCTTA-CTCA
* **
11338572 TGTTTTAATCCCAATC
122 TGGTTTAATCCTGATC
* * ** * *
11338588 ATTTGT--TTTTCTCACTTGTGATTTAATTCCAGTCATTTT--TTTCTCTT-ACTCGTGATTTAA
1 ATTT-TCATTTTTTGACTCATGGTTTAA-TCCCGTCATTTTCATTT-T-TTGACT--TGATTTAA
** * * * * * * * * * * *
11338648 T-TTTGGTCGTTTTAATTTTCTGACTCA-TGATTTAATTCCAAG-CATTTTTATTCTCTGAATCT
60 TCCCT-GTCATTTTCATTTTCTAACT-AGTGGTTTAA-TCCTAGTCAATTTAATTTTCTTACTCA
* *
11338710 TGATTTAATTAC-GATC
122 TGGTTTAA-TCCTGATC
* * ** *** *
11338726 ATTTTCATTCTCTGACTTGTGGTTTAATCTTAATCATTTTTCATTTTTTGAATCAT-AGTTTAAT
1 ATTTTCATTTTTTGACTCATGGTTTAATC-CCGTCA-TTTTCATTTTTTG-A-CTTGA-TTTAAT
* * * * * *** * * **
11338790 CAC-GATCATTTTCATTTTTTAACTTGTGATTTAATTCT-GATTGTTTTTATGTTT-TGACTTGT
61 CCCTG-TCATTTTCATTTTCTAACTAGTGGTTTAATCCTAG-TCAATTTAAT-TTTCTTACTCAT
*
11338852 GGTTTAATCC-CAGTC
123 GGTTTAATCCTGA-TC
* * *
11338867 ATTTTTCATTTTTTGACT--TGCAATTTAATCCCGATCATATTCATTTTTTGACCTGTAGTTTAA
1 A-TTTTCATTTTTTGACTCATG--GTTTAATCCCG-TCATTTTCATTTTTTGACTTG-A-TTTAA
* * * * *** * *
11338930 T-CCTGATCACTTTCATTTTTTGACTCA-TGGTTTAAT-CTTGATTGTTTTCATTTTCTGACTCA
60 TCCCTG-TCATTTTCATTTTCTAACT-AGTGGTTTAATCCTAG-TCAATTTAATTTTCTTACTCA
** *
11338992 TGGTTTAATCAGGGTC
122 TGGTTTAATCCTGATC
* * *
11339008 ATTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTCATTTTTTGACTCGTGGTTTAATCT
1 ATTTTCATTTTTTGACTCATGGTTTAATCCC-GTCATTTTCATTTTTTGACT--TGATTTAATCC
* * * * * * * *
11339073 C-GATCATTTTTTACTTTCTGAATTA-TGGTTTAATCCTGGTCATTTTTATTTT-TTCACTCCTA
63 CTG-TCA-TTTTCATTTTCT-AACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTT-ACTCATG
* *
11339135 ATTTAATTCTGATC
124 GTTTAATCCTGATC
* ** *** ** * *
11339149 ATTTTTATTTTTTGACTTGTGGTTTAATTTTGTTTGTTTTTCACTTTTTGACCTATG-GTTAAT-
1 ATTTTCATTTTTTGACTCATGGTTTAATCCCG--TCATTTTCATTTTTTGA-CT-TGATTTAATC
* * * * * ** * * * * *
11339212 TCTGGTCGTTTTTCACTTTT-TGACTCA-TGATTTAGTTATAAT-AGTTTTCATTTTTTTACTAA
62 CCT-GTC-ATTTTCA-TTTTCTAACT-AGTGGTTTAATCCTAGTCA-ATTTAATTTTCTTACTCA
*
11339274 TGGTTTAAT-CTCACTC
122 TGGTTTAATCCTGA-TC
* * * ** * *
11339290 GTTTTCATTTTTCTGACTCTTTGTTTAATCTCAATTATTTATCATTTTTTGACTAGTGGTTTAAT
1 ATTTTCATTTTT-TGACTCATGGTTTAATC-CCGTCATTT-TCATTTTTTGACT--TGATTTAAT
*** * * * *
11339355 CTAGGTCA-TTTCAAGTTTT-TCACTTA-TGGTTTAATCCCAGTC-A--T--TTTT-TGACTCGT
61 CCCTGTCATTTTC-A-TTTTCTAAC-TAGTGGTTTAATCCTAGTCAATTTAATTTTCTTACTCAT
*
11339411 GGTTTAATCACAG-TC
123 GGTTTAATC-CTGATC
* * * * * * *
11339426 CTTATTC-TTTTTCTAACTCATGGTTCAATCCTGATCGTTTTCATTTTCTGACTCATGGTTTAAT
1 ATT-TTCATTTTT-TGACTCATGGTTTAATCCCG-TCATTTTCATTTTTTGACT--TGATTTAAT
* ** * * * *** * * *
11339490 TCGAGTCATTTTTCATTTT-TCAACTTGTGATTTAATCCAAGTTGTTTTCATTTAT-TGACTTAT
61 CCCTGTCA-TTTTCATTTTCT-AACTAGTGGTTTAATCCTAGTCAATTTAATTT-TCTTACTCAT
* *
11339553 GATTTAA-ACTCGATC
123 GGTTTAATCCT-GATC
** ** * * * * *** * *
11339568 ACATTCATTTCCTGACTTATGATTTAAACCTGATCGCATTCATTTTCTGAGTCAT-AGTTTAATC
1 ATTTTCATTTTTTGACTCATGGTTTAATCCCG-TCATTTTCATTTTTTGA--CTTGA-TTTAATC
* * * * * * * * *
11339632 CCAGTCATTTTTCAATATCTGACTCGTGGTTTAAT-TTCGATCATTTTCAATTTT-TGACTCATG
62 CCTGTCA-TTTTCATTTTCTAACTAGTGGTTTAATCCTAG-TCAATTT-AATTTTCTTACTCATG
* * *
11339695 ATTTCATCCTAATC
124 GTTTAATCCTGATC
* ** * * ** * * * * *
11339709 ATTTTCATTTTCTGACTTGTGATTTAATTTCAATAATTTTCATTTTTTGTCTCATGGTATAATTC
1 ATTTTCATTTTTTGACTCATGGTTTAA-TCCCGTCATTTTCATTTTTTGACT--TGATTTAATCC
* * * * * ** * * * * * *
11339774 CTGTCGTTTTCATTCTCTGACTCGTGATTTAATTTTGGTCATTTTCATTTT-TGACTCGTGATTT
63 CTGTCATTTTCATTTTCTAACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTTACTCATGGTTT
**
11339838 AATTTTGATC
128 AATCCTGATC
* * ** * * * * *
11339848 ATTTTCATTTTCTAACTCATGGTTTAATCCCAGTTGTTTTCATTTTCTAACCTATAATGTAATCT
1 ATTTTCATTTTTTGACTCATGGTTTAATCCC-GTCATTTTCATTTTTTGA-CT-TGATTTAATCC
* * ** * ** *
11339913 C-GATCATTTTCTTTTCTCTAACTTGTAATTTAATTCTAGT-TGTTTACATTTTCTGACTCATGG
63 CTG-TCATTTTCATTT-TCTAACTAGTGGTTTAATCCTAGTCAATTTA-ATTTTCTTACTCATGG
* * *
11339976 TTTAAACTTGGTC
125 TTTAATCCTGATC
* * * * * *
11339989 ATTTTCATTTTTTGACTCATGGTTTAATCCCTATCGTTTTTAGTTTCTGACCCATGATTTAAT-C
1 ATTTTCATTTTTTGACTCATGGTTTAATCCC-GTCATTTTCATTTTTTGA--CTTGATTTAATCC
* * ** * * * * * * *
11340053 CTAGTCTTTTTCTTTTCTCTAACTTCTGATTTAAT-TTTGATCATTTTCATTTTCTAACTCGTGG
63 CT-GTCATTTTCATTT-TCTAACTAGTGGTTTAATCCTAG-TCAATTTAATTTTCTTACTCATGG
*
11340117 TTTAAACCT-AGTC
125 TTTAATCCTGA-TC
* * * * * * * *
11340130 A-CTTCAATTTTCT-AGCTCATGGTTGAATCCTGGTCATTTTCATTTTCTGACGTGGTTGAAT-C
1 ATTTTC-ATTTTTTGA-CTCATGGTTTAATCC-CGTCATTTTCATTTTTTGACTTGATTTAATCC
* * * * * *
11340192 CTAGTCATTTTCATTTTCTGACTTGTGGTTTAATCTTTGTCATTTTTATTTT-TTGACTCATGGT
63 CT-GTCATTTTCATTTTCTAACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTT-ACTCATGGT
*
11340256 TTAATCAC-GATG
126 TTAATC-CTGATC
* * *
11340268 ACTTTCATTTTCTAACTCATGGTTTAAT
1 ATTTTCATTTTTTGACTCATGGTTTAAT
11340296 TCAGGTATTT
Statistics
Matches: 2962, Mismatches: 735, Indels: 503
0.71 0.17 0.12
Matches are distributed among these distances:
133 3 0.00
134 85 0.03
135 45 0.02
136 59 0.02
137 22 0.01
138 223 0.08
139 483 0.16
140 663 0.22
141 932 0.31
142 320 0.11
143 123 0.04
144 4 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (137 bp):
ATTTTCATTTTTTGACTCATGGTTTAATCCCGTCATTTTCATTTTTTGACTTGATTTAATCCCTG
TCATTTTCATTTTCTAACTAGTGGTTTAATCCTAGTCAATTTAATTTTCTTACTCATGGTTTAAT
CCTGATC
Found at i:11337483 original size:29 final size:29
Alignment explanation
Indices: 11337441--11337496 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
11337431 ATGATCTTTT
*
11337441 TCATTTTCTAACTCGTGATTTAATCCTTG
1 TCATTTTCTAACTCGTGATATAATCCTTG
* * *
11337470 TCATTTTTTGACTCGTGGTATAATCCT
1 TCATTTTCTAACTCGTGATATAATCCT
11337497 GGTCGCTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (29 bp):
TCATTTTCTAACTCGTGATATAATCCTTG
Found at i:11337512 original size:99 final size:99
Alignment explanation
Indices: 11337404--11337682 Score: 251
Period size: 99 Copynumber: 2.7 Consensus size: 99
11337394 TCTTGGTTTT
* * *
11337404 TTTCATTTTTTGACTTATGATTTAATTATGATCTTTTTCATTTTCTAACTCGTGATTTAATCCTT
1 TTTCATTTTTTGACTTATGGTTTAATTATGATCTTTTTCATTTTCTAACTCATGGTTTAATCCTT
* ** *
11337469 GTCATTTTTTGACTCGTGGTAT-AATCCTGGTCGC
66 GTCATTTTTTGACTCGTGATATAAAT-CTAATCAC
* * * * *
11337503 TTTCATTTTTTGGCTTGTGGTTTAA-TATTGGT-TGTTTTCATTTTTTGACTCATGGTTTAATCC
1 TTTCATTTTTTGACTTATGGTTTAATTA-TGATCT-TTTTCATTTTCTAACTCATGGTTTAATCC
* * * * *
11337566 TAGTTGTTTTCATTTTTTGACTTGTTATTTAAATTTAATCAT
64 ---TTG---TCATTTTTTGACTCGTGATATAAATCTAATCAC
* *
11337608 TTTCATTTTTAGACTTATGGTTTAATCT-CGATCATTTTTCATTTTCTAACTCATGGTTTAATCC
1 TTTCATTTTTTGACTTATGGTTTAAT-TATGATC-TTTTTCATTTTCTAACTCATGGTTTAATCC
*
11337672 TGGTCATTTTT
64 TTGTCATTTTT
11337683 ATTTTCTGAC
Statistics
Matches: 142, Mismatches: 25, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
98 3 0.02
99 50 0.35
100 8 0.06
102 3 0.02
103 2 0.01
105 44 0.31
106 30 0.21
107 2 0.01
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (99 bp):
TTTCATTTTTTGACTTATGGTTTAATTATGATCTTTTTCATTTTCTAACTCATGGTTTAATCCTT
GTCATTTTTTGACTCGTGATATAAATCTAATCAC
Found at i:11340403 original size:69 final size:69
Alignment explanation
Indices: 11340342--11340543 Score: 228
Period size: 69 Copynumber: 2.9 Consensus size: 69
11340332 AATTCGATCG
* *
11340342 TTTTTACCTTTTGACTTGTGGTTTAATCTGGATCATTTTCATTTTTTGACTCGCGGTTTAATCTA
1 TTTTTACCTTTTGACTCGTAGTTTAATCTGGATCATTTTCATTTTTTGACTCGCGGTTTAATCTA
11340407 ATCA
66 ATCA
** * * *
11340411 TTTTTATTTTTTGACTCGTAGTTTAATCTGGATCATTTTTATTTTTTGACTCATC-ATTTAATCT
1 TTTTTACCTTTTGACTCGTAGTTTAATCTGGATCATTTTCATTTTTTGACTC-GCGGTTTAATCT
*
11340475 AGGTCA
65 A-ATCA
* * * * * * *
11340481 TTTTCA-TTTTCTGACTCATAGTTTGATCTCGATCATTTTTATTTTTTGACTCGTGGTTTAATC
1 TTTTTACCTTT-TGACTCGTAGTTTAATCTGGATCATTTTCATTTTTTGACTCGCGGTTTAATC
11340544 GAAGCCATTT
Statistics
Matches: 114, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
69 60 0.53
70 54 0.47
ACGTcount: A:0.19, C:0.15, G:0.13, T:0.53
Consensus pattern (69 bp):
TTTTTACCTTTTGACTCGTAGTTTAATCTGGATCATTTTCATTTTTTGACTCGCGGTTTAATCTA
ATCA
Found at i:11342131 original size:101 final size:101
Alignment explanation
Indices: 11342024--11342229 Score: 236
Period size: 101 Copynumber: 2.0 Consensus size: 101
11342014 CTCGTTTTCA
* * * * * * ** *
11342024 TTTTTTGACTCTTTGTTTAATCTCAGTTATTTTTCATTTTT-TGACTCGTGGTTTAATCTA-AGT
1 TTTTTTGACTCGTGGTTTAATCCCAGTCATTATTC-TTTTTCTAACTCACGGTTCAATCTAGA-T
* *
11342087 CATTTTAATTTTTTGACTTATGGTTTAATCCTGGTCAT
64 CATTTTAATTTTTTGACTGATGGTTTAATCCGGGTCAT
* * *
11342125 TTTTTTGACTCGTGGTTTAATCCCAGTCCTTATTCTTTTTCTAACTCACGGTTCAATCTTGATCG
1 TTTTTTGACTCGTGGTTTAATCCCAGTCATTATTCTTTTTCTAACTCACGGTTCAATCTAGATCA
* *
11342190 TTTTCATTTTTTGACTGATGGTTTAATTCGGGTCAT
66 TTTTAATTTTTTGACTGATGGTTTAATCCGGGTCAT
11342226 TTTT
1 TTTT
11342230 CATTTTCTGA
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
100 5 0.06
101 81 0.93
102 1 0.01
ACGTcount: A:0.17, C:0.16, G:0.14, T:0.53
Consensus pattern (101 bp):
TTTTTTGACTCGTGGTTTAATCCCAGTCATTATTCTTTTTCTAACTCACGGTTCAATCTAGATCA
TTTTAATTTTTTGACTGATGGTTTAATCCGGGTCAT
Found at i:11343659 original size:139 final size:136
Alignment explanation
Indices: 11343501--11343818 Score: 329
Period size: 139 Copynumber: 2.3 Consensus size: 136
11343491 TTTGACACAC
* * * *
11343501 GGTTTAATCCTGATCGTTTTCATTTTCTAACTCGTGATTTAGTTTGAGTCATCTTCATTTTTTAA
1 GGTTTAATCCTGATTGTTTTCATTTTCTAACTCGTGATTTAATCTCAGTCATCTTCATTTTTTAA
* * * * *
11343566 CTTATGGTTTAATC-CAGGTCAT-TTTTTTTTCTGATTGGTGATTTAATCTCAG-TTATTTTTAT
66 CTCATGGTTTAATCTCA-GTCATATTTTTTTT-T-ATT-GTGATTTAAAC-CAGATCATATTCA-
11343628 TTTCTGACTCGT
125 TTTCTGACTCGT
* * * ** * * * *
11343640 GGTTTAAT-CTGGGTTGTTTTCATTTTTTGACTTATGGTTTAATCTCAGTCGTTTTCATTTTTTG
1 GGTTTAATCCT-GATTGTTTTCATTTTCTAACTCGTGATTTAATCTCAGTCATCTTCATTTTTTA
* * * *
11343704 ACTCCTGGTTTAATCTCAGTCATATTTTTTTTTCTTGTGATTTAAACCTGATCGTATTCATTTCT
65 ACTCATGGTTTAATCTCAGTCATATTTTTTTTTATTGTGATTTAAACCAGATCATATTCATTTCT
11343769 GACTCGT
130 GACTCGT
* *
11343776 GGTTTAATCCTTATTGTTTTCATTTTCTAACTGGTGATTTAAT
1 GGTTTAATCCTGATTGTTTTCATTTTCTAACTCGTGATTTAAT
11343819 TCTAATTGTT
Statistics
Matches: 145, Mismatches: 29, Indels: 13
0.78 0.16 0.07
Matches are distributed among these distances:
136 47 0.32
137 17 0.12
138 4 0.03
139 67 0.46
140 10 0.07
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.53
Consensus pattern (136 bp):
GGTTTAATCCTGATTGTTTTCATTTTCTAACTCGTGATTTAATCTCAGTCATCTTCATTTTTTAA
CTCATGGTTTAATCTCAGTCATATTTTTTTTTATTGTGATTTAAACCAGATCATATTCATTTCTG
ACTCGT
Found at i:11344043 original size:62 final size:61
Alignment explanation
Indices: 11343966--11344086 Score: 161
Period size: 62 Copynumber: 2.0 Consensus size: 61
11343956 ATCCTCGTCA
* *** * * *
11343966 TTTTTATTTTTTGACTTGTGATTTAATTCTAGTCGTTTTCATTTTTTGACTTATGATTTCG
1 TTTTTATTTTCTGACTCACGATTTAATCCTAATCATTTTCATTTTTTGACTTATGATTTCG
*
11344027 TTTTTCATTTTCTGACTCACGATTTAATCCTAATCATTTTCATTTTTTGACTTGTGATTT
1 TTTTT-ATTTTCTGACTCACGATTTAATCCTAATCATTTTCATTTTTTGACTTATGATTT
11344087 ACTATCGATC
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
61 5 0.10
62 46 0.90
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (61 bp):
TTTTTATTTTCTGACTCACGATTTAATCCTAATCATTTTCATTTTTTGACTTATGATTTCG
Found at i:11344109 original size:97 final size:97
Alignment explanation
Indices: 11343931--11344112 Score: 260
Period size: 97 Copynumber: 1.9 Consensus size: 97
11343921 ATTTAAGTCA
* ** * *
11343931 TTTTCATTTTTTGACTCCTGATTTAATCCTCGTCATTTTTATTTTTTGACTTGTGATTTAATTCT
1 TTTTCATTTTCTGACTCCTGATTTAATCCTAATCATTTTCATTTTTTGACTTGTGATTTAATTCG
11343996 AGTCGTTTTCATTTTTTGACTTATGATTTCGT
66 AGTCGTTTTCATTTTTTGACTTATGATTTCGT
*
11344028 TTTTCATTTTCTGACTCAC-GATTTAATCCTAATCATTTTCATTTTTTGACTTGTGATTTACTAT
1 TTTTCATTTTCTGACTC-CTGATTTAATCCTAATCATTTTCATTTTTTGACTTGTGATTTAAT-T
*
11344092 CGA-TCATTTTTCATTTTTTGA
64 CGAGTC-GTTTTCATTTTTTGA
11344113 GTCATGGTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
97 57 0.76
98 18 0.24
ACGTcount: A:0.19, C:0.15, G:0.10, T:0.56
Consensus pattern (97 bp):
TTTTCATTTTCTGACTCCTGATTTAATCCTAATCATTTTCATTTTTTGACTTGTGATTTAATTCG
AGTCGTTTTCATTTTTTGACTTATGATTTCGT
Found at i:11345653 original size:39 final size:39
Alignment explanation
Indices: 11345607--11345682 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
11345597 ATCCCAGTCG
*
11345607 TTTTTCATTTTTTGACTCGTAGTTTAATCTCGATCATCA
1 TTTTTCATTTTTTGACTCATAGTTTAATCTCGATCATCA
* *
11345646 TTTTTCATTTTTTTACTCATGGTTTAATCTCGATCAT
1 TTTTTCATTTTTTGACTCATAGTTTAATCTCGATCAT
11345683 TTTCATTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (39 bp):
TTTTTCATTTTTTGACTCATAGTTTAATCTCGATCATCA
Found at i:11346306 original size:68 final size:68
Alignment explanation
Indices: 11346181--11346374 Score: 194
Period size: 68 Copynumber: 2.8 Consensus size: 68
11346171 TGGTTTTCAG
* * * * ** *
11346181 TTTTTCACTTGTGATTTAATTCTAGTAATTTTCATTTTTTGACTCGTGGTTCCATCCCGATCA-T
1 TTTTTGACTAGTGGTTTAATTC-AGTAATTTTCATTTTTTGACTTGTGGTTTAATCCCAATCATT
*
11346245 TTTC
65 TTTA
* * * *
11346249 TTTTTGACTAGTGGTTTAATCTCAGTCATTTTTATTTTTTGACTTATAGTTTAATCCCAATCATT
1 TTTTTGACTAGTGGTTTAAT-TCAGTAATTTTCATTTTTTGACTTGTGGTTTAATCCCAATCATT
11346314 TTTA
65 TTTA
* **
11346318 TTTTCTGACTCA-TGGTTTAATTTAGGTTGTTTTCATTTTTTGACTTGTGGTTTAATC
1 TTTT-TGACT-AGTGGTTTAATTCA-GTAATTTTCATTTTTTGACTTGTGGTTTAATC
11346375 TCTGTCGTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
68 49 0.48
69 12 0.12
70 41 0.40
71 1 0.01
ACGTcount: A:0.19, C:0.14, G:0.13, T:0.54
Consensus pattern (68 bp):
TTTTTGACTAGTGGTTTAATTCAGTAATTTTCATTTTTTGACTTGTGGTTTAATCCCAATCATTT
TTA
Found at i:11347018 original size:143 final size:143
Alignment explanation
Indices: 11346660--11347390 Score: 411
Period size: 143 Copynumber: 5.2 Consensus size: 143
11346650 ATACTTATCG
* * ** *
11346660 TTTTCATTTTGTGACTCATCATTTAATC-CGGGTCA-TTTTCATTTTCTAACTCATGGTTTAAT-
1 TTTTCATTTTCTGACTCATGATTTAATCTC-AATCAGTTTTCATTTTCTGACTCATGGTTTAATC
** * * * *
11346722 TCGAATCA--TTTTCATTTTTTGACTCATGGTTTAATTGGGGTCATTTTCATTTTCTTACTCATG
65 TCG-ATCATTTTTTTTTTTTTTCACTCATGATTTAATTGGGATCATTTCCATTTTCTTACTCATG
11346785 GTTTAATCCTGGTCA
129 GTTTAATCCTGGTCA
* * * * *
11346800 TTTTCATTTTCTGACTCATGGTTTAATCTCAATCATTTTTCATTTTTTGAATCTTGGTTTAATCT
1 TTTTCATTTTCTGACTCATGATTTAATCTCAATCAGTTTTCATTTTCTGACTCATGGTTTAATCT
* * ** ** * *
11346865 TGGTTGTTTTTTTTTTTTTTCACTCATGATTTAATTTTGATCGTTTCCATTTT-TTGAATTC-TG
66 CGATCATTTTTTTTTTTTTTCACTCATGATTTAATTGGGATCATTTCCATTTTCTT--ACTCATG
*
11346928 GTTTAATTCTGGTCA
129 GTTTAATCCTGGTCA
** *
11346943 TTTTCCACTTTT-TGACTTGTGATTTAATTTCAATC-GTTTTCATTTTCTGACTCATGGTTTAAT
1 TTTT-CA-TTTTCTGACTCATGATTTAATCTCAATCAGTTTTCATTTTCTGACTCATGGTTTAAT
* * * * * *
11347006 CTCGATCA--TTTTTATTTTCTGACTCATGCTTTAATCCT-GG-TCATTTTTCATTTTCTAACTC
64 CTCGATCATTTTTTTTTTTTTTCACTCATGATTTAAT--TGGGATCA-TTTCCATTTTCTTACTC
* * *
11347067 ACT--TTTAATCTTGATCTT
126 A-TGGTTTAATCCTGGTC-A
* * * * * * *
11347085 TTTTCATTTTTTGACTCATGGTTTAATCTCGATC-CTTATTCTTTTTTTTGACTCGTGGTTTAAT
1 TTTTCATTTTCTGACTCATGATTTAATCTCAATCAGTT-TTC-ATTTTCTGACTCATGGTTTAAT
** * * ** *
11347149 CTCGATCA-TTTTTTCATTTTTGACTCGTGATTTAATCTGGG-TTGTTTTCA-TTTCTTGACTCA
64 CTCGATCATTTTTTTTTTTTTTCACTCATGATTTAAT-TGGGATCATTTCCATTTTCTT-ACTCA
* * * *
11347211 TGATTTAAACCCGATCA
127 TGGTTTAATCCTGGTCA
** * * * * * * *
11347228 TATTT-ATTTTCTGACTTGTGGTTTGATCCCAGTCA-TTTTCTTTTTTTGACTCATGATTTAATC
1 T-TTTCATTTTCTGACTCATGATTTAATCTCAATCAGTTTTCATTTTCTGACTCATGGTTTAATC
** * * * * ** **
11347291 -C--T-AGTTGTTTTCATTTTCTGACTCATAATTAAATTTTGATCATTTTAATTTT-TTACTCAT
65 TCGATCA-TT-TTTTTTTTTTTTCACTCATGATTTAATTGGGATCATTTCCATTTTCTTACTCAT
*
11347351 GGTCTAATTCCT-GTCA
128 GGTTTAA-TCCTGGTCA
11347367 TTTTCATTCTT-TGACTCATGATTT
1 TTTTCATT-TTCTGACTCATGATTT
11347391 TATTTTGATC
Statistics
Matches: 458, Mismatches: 99, Indels: 69
0.73 0.16 0.11
Matches are distributed among these distances:
137 1 0.00
138 4 0.01
139 31 0.07
140 65 0.14
141 109 0.24
142 30 0.07
143 152 0.33
144 62 0.14
145 4 0.01
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.53
Consensus pattern (143 bp):
TTTTCATTTTCTGACTCATGATTTAATCTCAATCAGTTTTCATTTTCTGACTCATGGTTTAATCT
CGATCATTTTTTTTTTTTTTCACTCATGATTTAATTGGGATCATTTCCATTTTCTTACTCATGGT
TTAATCCTGGTCA
Found at i:11347217 original size:249 final size:246
Alignment explanation
Indices: 11327695--11358419 Score: 2257
Period size: 246 Copynumber: 125.3 Consensus size: 246
11327685 TTTGGCTTGG
* * * * * ***
11327695 GATTTAATTTCGGTCA-TTTTTATTTTCTTACTCGTGATTTAATCTCAATCATTTTCATTTTCTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* ** * * * * * **
11327759 TA-T-ATGGTTTAATCCCAATAATTTTTATTTTTTGACTCGTGGTTTAATCTCTATTGTTTTTAT
66 -ACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* * ** * ** * ** * *
11327822 TTTTTGACTTATGATTTAATTTTTGTCATTTTT-ATTTTCTGACTTGTGGTTTAATCCAGGTCAT
130 TTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATCTT
* * * * *
11327886 TTTCATTTTCTT-ACTCGTGGTTTAATCCCGATCATTTT-TATTTCTTAACTCAT
194 TTTCATTTT-TTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* **** * * * * **** * *
11327939 GGTTTAATCCCAATCATTTTTTATTTT-TGGACTCATGGTTT-ATACCCCATCAATTTCATTTTT
1 GATTTAATTTTGATCACTTTTCATTTTAT-GACTCGTGATTTAAT-CTGGGTCATTTTCATTTTC
* * * * * * ** * * * *
11328002 TAATTGATGGTTTAATCTCGATTGTTTTTATTTTCTAACTCGTGATTTAATCTC-AGTCATCTTT
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCAT-TTT
* * * * * **
11328066 CATTTTTTGACT-AGTGGTTTAGTCTCT-ATCA-TTTTCATTTTCTGACTCAGGGTTTAATCTTG
127 TATTTTCTGACTCA-TGATTTAATC-CTGGTCATTTTTCATTTTCTGACTCA-TATTTAATCTTG
* * * * **
11328128 ATCATTTTTCATTTTTTGACTCATGGTTTAATATAGGTCATTTAC-ATTTTTTGACTTGT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTAATCT-CGTCATTTTCTTTTTTTTGACTCAT
* ** * * ** * * ** * *
11328187 GGTTTAATCTCCG-TCA-TTTTCATTTTCTGAGTTATGGTTTAATCTTGGTTGTTTTGATGTTCT
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * * * * *
11328250 TACTCATTATTTAA-TCCAGATCA-TTT--TTTTCTAACTCGTGATTTAATC-CCAGTCATTTTC
65 GACTCATGATTTAATTTCA-ATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTT
* * * * * * ** * *
11328310 ATTTTTTGACTCTTAATTTCATCCTGATC-TTTTTCATTTTCTAACTTGTGATTGAATTTTGATC
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATC
* * * * * * **
11328374 ATTTTT-ATTTTTTGTCTCGTGATTTCATCCCG--ATTGTT-TTTATTTTCTAACTTGT
192 -TTTTTCATTTTTTGACTCATGGTTTAATCTCGTCATT-TTCTTT-TTTT-TGACTCAT
** * ** * * * * * *
11328429 GATTTAA-TTCAATTC-GTTTTTGTTTTCTAACTCATGGTTTAATCCT-GGTCATTTTCTTTTTT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTC
* * * * * ** ** *
11328491 TGACT-AGTGGTTTAATTCCAGTCATTTTTATTCTCTGACTCATTATTTAAT-TTTAGTC-GTTT
64 TGACTCA-TGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTT
* * *** * * * * ** ** *
11328553 TATTTTTTGACTCATGGTTTAATCCCAATCATTTTTTATTTTTTCACACGAGGTTTAATCCCGGT
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTC-ATATTTAATCTTGAT
* * * * **
11328618 CATTTTT-ATTTTTTGACTTC-TGGTTTAATCTCAATCATTTT-TATTCTCTGACTTGT
191 C-TTTTTCATTTTTTGAC-TCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* ** * * * * *
11328674 GGTTTAATTACGATCA-TTTTCGTTTTCTGACTCTTGGTTTAATCCT-GGACATTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTCT
* * * * * * * * * * *
11328737 TACTCAT-AGTTTAACTT-GATCATTTTTATTTTTTGGCTCGTCGTTTAATCTCGTTCGTTTTAC
65 GACTCATGA-TTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT-T
* ** * * * *
11328800 ATTTTTTGACTCATGATTTAATTTTGATC-GTTTTCATTTTCTTACTCATGATTTAATTTTGGA-
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT-GAT
** * * * * * * *
11328863 GGTTTTCCTTTTTCGACAT-ATGATTTAATCCTAGTCATTTTTCATTTTCTT-ACTCGT
191 CTTTTTCATTTTTTGAC-TCATGGTTTAAT-CTCGTCA-TTTTCTTTTTTTTGACTCAT
* * * * * * * * * ** ** *
11328920 GGTTTACTCTTGATCA-TTTTTATTTTCTAACTTGTGGTTTAATCCCGATTGTTTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTCT
** * * ** * * * * * *
11328984 GACTTGTGGTTTAATCTCGCTCGTTTTCATTTTTTGACTCGTGATTTAAT-TCCAGTCATTTTCA
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTTA
* * * * * * * *
11329048 TTTTCTGACTCATGGTTCAATCTTGATCATTTTT-ATTTTCTAACTCGTGGTTTAAT-TTTATTC
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA-TC
* * * * ** * * * * * *
11329111 ATTTTCATTCTCTAACTTGTGATTTAATTTTGATCGTTTTC-ATTTTCTGACTCAT
192 TTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* ** * * * * * *
11329166 GGTTTAATCCCTG-TCA-TTTTCATTGTCTAACTCATGATTTTATCTTGGTCATTTTCATTTT-T
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* *** * * * * * *
11329228 CAACTTC-TGATTTAATTTTGTTCATTTTTATTTTTTAATTCATGGTTTAATCCCGATCGTTTTC
65 -GAC-TCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT-
* * * * **
11329292 T-TTCTCTGACT--TGCTATTTCATCCTGATCATTTTT-ATTTTTTGACTTGTGATTTAAT-TTC
127 TATTTTCTGACTCATG--ATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT-
* * * *
11329352 GATCATTTTT-ATTTTCTAACTCATTGTTTAATCCCAGTCATTTTC-TTTTTTTGACTCAT
188 GATC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * * * *
11329411 GATTTAATTCTGATCA-TTTTCATTTTTTGACTCAG-GGTTTAATCTTGGTCATTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTC-GTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * * * ** * *
11329474 GACCCGTGGTTTAATTTTATTCATTTTTATTCCCTAACTCATGATTTAAT-TCTGATCATTTTTA
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTTTA
* * *** * * * * *
11329538 TTTTTTGACTCAT-AGTCTAATCCCAATCGTTTTTTATTTAT-TGACTCGTGGTTTAATCTCGAT
129 TTTTCTGACTCATGA-TTTAATCCTGGTCATTTTTCATTT-TCTGACTCAT-ATTTAATCTTGAT
* * * *
11329601 CATTTTCATTTTTTGACTCATGGTTTAATCATGGTCATTTTC-ATTTTCTGACTCAT
191 CTTTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* * * * * * * *
11329657 GGTTTAAATTTGAT-AATTTTTATTTTTTGACTTGTGGTTTAATCTCGGT-AGTTTTTCATTTTC
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCA--TTTTCATTTTC
* * * *
11329720 TGACTCATGGTTTAAATTCGATCATTTTCATTTTCTGACTCATGGTTTAATCTTGAT-AGGTTTT
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCA--TTTT
* * * * * * * * *
11329784 CATTTTCTTACTCATGGTTTAATCTTGATC-TTTTTTATTTTTTGACTCGTGATTTAATATTGAT
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGAT
* * * * * * **
11329848 CATTTTTCATTTTTTAACTCATGGTTTAATCTTGGACAGTTTC--ATTTCTGACTTGT
191 C-TTTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* ** * * **** **
11329904 GGTTTAATCCT-AGTCGA-TTTTCATTTT-TCGACTCATGGTTTAATCCCTATTTTTTTCATTTT
1 GATTTAATTTTGA-TC-ACTTTTCATTTTAT-GACTCGTGATTTAATCTGGGTCATTTTCATTTT
* * * * * **
11329966 TTGACTCGTGATTTAATTTCTATCATTTTTATTTTTTGACTCATTATTTAATCTCAGA-CATTTT
63 CTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTT
* * * * * *
11330030 CATTTTCTGACTCAT-AGTTTAAT-CTCGATCATTTTTTATTTTCTAACAT-ATGTTTTAAT-GT
127 TATTTTCTGACTCATGA-TTTAATCCT-GGTCATTTTTCATTTTCTGAC-TCAT-ATTTAATCTT
* * * * * *
11330091 CAGT-TGTTTTCATTTTTTGACTCATGATTTAATCTCGGTCAGTTT-TATTCTCTGACTCAT
188 GA-TCT-TTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * * ** * *
11330151 AATTTACTTTTGATCA-TTTTCATTTTTTGACTTTTGGTTTAATCTAGG-CTATTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTC-ATTTTCATTTTCT
* * * * * *
11330214 GACTCGTGGTTT-ATTATCGATCATTTTCATTTTTTGACGT-ATGGTCTAAGCTCG-TCATTTTT
65 GACTCATGATTTAATT-TCAATCATTTTCATTTTCTGAC-TCATGGTTTAATCTCGATCATTTTT
* * * * * * * ** *
11330276 CATTTTTTGTCTCGTGGTTTAATCCTTGTCA-TTTTCATTTTTTGAGTCAGGGTTTAATCCT-AG
128 -ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCA-TATTTAATCTTGA-
** * * * *
11330339 TCGTTTTT-AACTTTTGACTCGTGGTTT-AGC-C-CCAATTGTTTTTCATTTTTTGACTCAT
190 TC-TTTTTCATTTTTTGACTCATGGTTTAATCTCGTC-ATT-TTCTT--TTTTTTGACTCAT
* * * * * * *** *
11330397 GGTTT--TTCCTGATTA-TTTTCAATTTT-TGACTTGTGGTTTAATTTCAATCATTTTCATTTTT
1 GATTTAATT-TTGATCACTTTTC-ATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTC
* * ** * * * * * **
11330458 TGGCTCATGGTTTAATCTT-GGTCATTTTTATTTTCTGACTCTTGATTTAATCTCGGTCGTTTCC
64 TGACTCATGATTTAAT-TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* * * * * * * * * *
11330522 ATTTTTTAACTCGTGATTTAATTCTAGTCATTTTT-ATTTTTTGGCACATGATTTCATCCT-ATT
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA-T
* * * * * * * * *
11330585 CATTTT-ATTTTTCTGACT-GTGATTTAATTTTGATCGTTTT-TATTTTTTAACTCGT
191 CTTTTTCATTTTT-TGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* *** * * * ** * * *
11330640 GGTTTAATCCCGATCA-TTTT--TTTT-T-ACTGGTGGTTTAATTTTAGTTATTTTTATTCTCTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * * *
11330700 ACTCGTGATTTAATCTCAGTCATTTTCATTTGT-T-AATGCATGGTTTAAT-TCTGTTCATTTTC
66 ACTCATGATTTAATTTCAATCATTTTCATTT-TCTGACT-CATGGTTTAATCTC-GATCATTTTT
* * ** * * * * *
11330762 ATTTTCTAAGTTGTAATTTAATTCTAGTCATTTAT-ATTTTCTGACTCGTGGA-TTAATCTCT-A
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT--ATTTAATCT-TGA
* * * * * *
11330824 TCATTTTTCATTTTTTGACCCGTAGTTTAATCTCGGT--TGTTCTTATTTTTTGATTCGT
190 TC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTT-TTTTTTGACTCAT
* * * * * * **** * **
11330882 GGTTTAATATTGGTCA-TTTCCATTTTTTGACTCGTGGTTTAATC-CAAACATTTTCACTTTCAA
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * ** * * * * ***
11330945 ACTCATGGTTTAA-TACGGGTCGTTTTCATTTTTTGACTCATGATTTAATCTCGGTTGCTTTTAT
66 ACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* ** * * * * * ***
11331009 TTTTTGACTTGTGGTTTAATCCTGATCATTTTTCATTTT-TTAGCTTATGGTTTAATCCAAAT-T
130 TTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGA-CTCAT-ATTTAATCTTGATCT
* * * * * * **
11331072 ACTTTCAATTTCTAACTCATGGTTTAATCCCG--ATTGTTTTTCATTTTTTGACTTGT
193 -TTTTCATTTTTTGACTCATGGTTTAATCTCGTCATT-TTCTT--TTTTTTGACTCAT
** * * * ** * ** *
11331128 GATTTAATCCTGGTCA-TTTCCATTTTTTGACAAGTGATTTAATTTCTGTCATTTTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * *
11331192 ACTCGA-GATTTAA--TCATGATCATTTTCATTTTCTGACACGTGGTTTAATTTCGTTCATTTTT
66 ACTC-ATGATTTAATTTCA--ATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* * ** * * * ***
11331254 ATTTTGTAACTCATGATTTAATTTTGGTCA-TTTTCATTTTCTAACT-GTGGTTTAATCCCAATC
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATC
* * * *
11331317 ATTTTT-ATTTTTTGACTCATGGTTTCATCTCGGCCATTTTCATTTTTTT-ACTCGT
192 -TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * * * * * * * ** *
11331372 GATTTAATCTT-AGTC-GTTTTTATTCTT-TGACTCATAATTTAATTTTGATTGTTTTCATTTTT
1 GATTTAATTTTGA-TCACTTTTCATT-TTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTC
* * ** * *
11331434 TGACTCCT-AGTTTAA-TCCAGGCCATTTTCAATTTCTAACTCATGGTTTAATC-C-AGTCATTT
64 TGACTCATGA-TTTAATTTCA-ATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTT
* * * * * * * * *
11331495 TCATTTTTTGACTTATGGTTTAATCTTGGTCATTTTTTAATTTATGACTCATGATTTAATCTTGG
126 TTATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* ** * * **
11331560 TCGTTTTCATTTTCGGACTCATGGTTTAATCTTGGTCATTTT-TCATTTTTTGACTTGT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCT-TTTTTTTGACTCAT
* **** * * * * * *
11331618 GGTTTAATCCCCACCA-TTTTCATTTTCTCACTCAG-GGTTTAATCCT-AGTCATTTTCATTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTC-GTGATTTAAT-CTGGGTCATTTTCATTTTC
* * * * * * * * *
11331680 TGACTCGTCATTTAATCTCGATCATTTTCATTTTTTGACTCATGATTTAATCTTGATCGTTTTCA
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT-T
** * * * * * ** *
11331745 ATTTT-TGACTTGTGGTTTAGTCCTAGTCA-TTTTCGTTTTTTGACTCATGGTTAATCTTGGGT-
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCATATTTAATCTT-GATC
* * * * * * *
11331807 GTTTTCATTTTCTGACTCGTGGTTTAATCCTAGTCGTTTTC-ATTTTTTGACTTAT
192 TTTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCTTTTTTTTGACTCAT
* ** * * ** * *
11331862 GTTTTAATCCT-AGT--CTTTTCATTTTTTGAC-CTGTGGTTTAATCTCAGTTAGTTTTTATTTT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTC-GTGATTTAATCTGGGTCA-TTTTCATTTT
* * * * * * * * * *
11331923 TTGACTCGTGGTTTAATCTCGATCTTTTTCATTTTCTAACT-AGTGATTTAATTTCGATCGTTTT
63 CTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCA-TGGTTTAATCTCGATCATTTT
* ** * ** * * * *
11331987 CATTTTCTGACTTGTGATTTCAT-CTCAATCA-TTTTCTTTTTTTGACTCGTGATTT-ATTTATG
127 TATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT-TG
* * * * **
11332049 ATCATTTTT-ATTTTCTAACTTATGATTTAATC-CTGATCATTTTC-TTTTTTTGACTTGT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-G-TCATTTTCTTTTTTTTGACTCAT
* ** * * * * ** * * *
11332107 GGTTTAA-TTCCAGTCA-TTTT-ATTCTCTAACTCGTTATTTAAT-TCCAGTCTTTTTTATTCTC
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCT-GGGTCATTTTCATTTTC
* * * ** * * * * *
11332168 TGATTCATGA-TTAATTTTAGTTGTTTTCCTTTTCTAACTCATGATTTAAT-TCCAATCATTTTC
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCT-CGATCATTTTT
* * * * * * ** *
11332231 ATTTTTTGACTCATGGTTTAATCCTGGTCA-TCTTCATTTTCT-AGTAGATGGTTTAATCCCGGT
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACT-CAT-ATTTAATCTTGAT
* * * ** *
11332294 CATTTTT-ATTTTTTGACTCATGATTCAATTTCAGTTGTTTTC-ATTTTTTGACTCAT
191 C-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* ** * * *** * ** * * *
11332350 GGTTTAATCCTGGTCA-TTTTTATTCCCTGACTCATGATTTAATTCT-ACTCGTTTTCTTTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAA-TCTGGGTCATTTTCATTTTCT
* * * * * * *
11332413 GACT-AGTGGTTT-ATTCTTAGTCATTTTCATTTT-TGGAC-AAGTGGTTTAATTCTGGCT-GTT
65 GACTCA-TGATTTAATT-TCAATCATTTTCATTTTCT-GACTCA-TGGTTTAA-TCTCGATCATT
* * * *
11332473 TTCATTTTCTAACT--TGAAGTTTAATCCTGGTCA-TTTTCATTTTCTGATTCATGTTTTAAT-T
125 TTTATTTTCTGACTCATG-A-TTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT
* * * * * * * * * *
11332534 CT-ATTCATTTTTTA-TCTCTAACTCATGATTTAATTTTGGTCGTTTTC-ATTTTCTGACTCACT
187 -TGA-TC-TTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTGACTCA-T
*** * ** * ** * *
11332596 G-TTTAATCCAG-TCA-TTTTCATTTTTTGACTTTTGATTTAGTCTCAGTTATTTTTATTTTCTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * ** * * *
11332658 ACTCATGGTTTAA-TCCCGTCATTTTCATTTTCTGAGT-AGTGCTTTAATCGCAATTGCTTAATC
66 ACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCA-TGGTTTAAT--C---T-C--GA--
* * * * * * * *
11332721 TCTGTTGTTTTCCTTTTCTGCCTCATGCTTCAATCCTGGTCGTTTTTCATTTTTTGACTCATGGT
120 TC--AT-TTTT-ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-AT
* * * * ** * * * * * * *
11332786 TTAATCCT-AGTCATTTTCATTTTCTAACTTTTGGTTTATTCCCAATCATTTTC-ATTCTCTAAC
180 TTAATCTTGA-TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGAC
11332849 TCAT
243 TCAT
* * * * * * * *
11332853 GA-TTAATTTCGATCA-TTTTCATTTTCTAACTCATGATATAATTTTGGTCATTTTTATTCTT-T
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATT-TTCT
* * * * *
11332915 GACTCATAATTTAATTTCGAT-AGTTTTCATTTTTTGACTCATGGTTTAATC-CCAGTCATTTTC
65 GACTCATGATTTAATTTCAATCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTT
* * * *
11332978 ATTTTTTGA--CACGAATTTAAT-CTCGATCA-TTTTCATTTTTTGACTTC-TAATTTAAT-TTC
128 ATTTTCTGACTCATG-ATTTAATCCT-GGTCATTTTTCATTTTCTGAC-TCAT-ATTTAATCTT-
* * * * *
11333037 TATCATTTTCATTTTTTGACTCAGGGTTTAATC-CTGATCATTTT-TCATTTTTTGA-T-TT
188 GATCTTTTTCATTTTTTGACTCATGGTTTAATCTC-G-TCATTTTCT-TTTTTTTGACTCAT
** * * * * * * *
11333095 GTAGTTTAATCCTGGTCA-TTGTCATTTTCTAACTCATGGTTTAATCTCGGTCATTTTCATTTTC
1 G-A-TTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTC
* * ** * * * * *
11333159 TGACACATGGTTTAATCCCAATCGTTTTCATTTTTTGACTCGTGGTTTAATCTCGATCGTTTTCA
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* *** ** * * * * *
11333224 TTCTT-TGA-TCATGGTTTAATCCCCATTGTTATTCATTTTTTGGCTCATGGTTTAAT-TTCAAT
129 TT-TTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT-GAT
* * * * * *
11333286 C-GTTTCTATATTTTGACTCATGGTTTAATCCCGGTCATTTGC-ATTTTCT-ATCTCAT
191 CTTTTTC-ATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGA-CTCAT
* * * * * * * * * ** *
11333342 GGTTTAATCTAGGTCAC-TTTCATTTTCTAACTCATGATTTAATCTTGGAT-GTTTTTGTTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATC-TGGGTCATTTTCATTTTCT
* * ** * * * * ** * * *
11333405 GACTTATGGTTTAATCCCCATCGTTACTCATTTTTTGACTTGTGATTTAATCTC-AGTCGTTTCT
65 GACTCATGATTTAATTTCAATCATT-TTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTT
* * * * * *
11333469 ATTTTTTGACTCATGGTTTAGTCTTGGTCA-TTTTCATTTT-TTAGCTCATAATTTAATCCTGAT
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGA-CTCAT-ATTTAATCTTGAT
* ** * * **
11333532 -TGTTTTCGTTTTTTGACTTGTGGTTTAATCCTAGTCATTTT-TTATATTTTGACTTGTT
191 CT-TTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCTT-TTTTTTGAC-TCAT
*** * * * * **
11333590 G-TTTAATCCCGATC-GTTTTCATTTTTTGACTCATGGTTTAATCTCGATTGC-TTTT-ATTTTC
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCT-GGGT-CATTTTCATTTTC
* * ** * ** * *
11333651 TGACTCGTGGTTTAACTTT-GGTCATTTTCATTTTTTGACTTGTGGTTTAATCCCGGTCATTTTT
64 TGACTCATGATTTAA-TTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* ** * * * * * **
11333715 -TACTTCTTGACTTGTGGTTTAA-CCTCGTTCA-TTTTCTTTTTCTGACTTATGGTTTAATC-CC
128 AT-TTTC-TGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG
* * * * *
11333776 AGTCATTTTCATTTCTTG--TC---GTTTAATCTTAGTCAATTTTCATTTTCTT-ACTCAT
189 A-TCTTTTTCATTTTTTGACTCATGGTTTAATC-TCGTC-ATTTTCTTTTTTTTGACTCAT
* * * ** * * * * * * ** * *
11333831 GGTTTAATCTCGAT-TGTTTCCATTTTTTTACTTGTAATTTAATTTTTGTCATTTTTTATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCA-TTTTCATTTTCT
* * * * * * ** * * * * *
11333895 GACTCGTGGTTTAA-TCCTGATCATTTTGATTTTTTGACTTGTAGTTTAAACCCAATCTTTTTTA
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* ** * *** * * ** * *
11333959 TTTTCTAACTTGTGGTTTAATCCCAATTGA-TTTTCATTTTCTAACT-AGTGGCTTAGTCCTGAT
129 TTTTCTGACTCATGATTTAAT-CCTGGTCATTTTTCATTTTCTGACTCA-T-ATTTAATCTTGAT
* * * * ** *
11334022 C-ATTTCA-TTTTTGACTCATGATTTAATTTTGGTTGTTTTC-ATTTTTTGACTCAT
191 CTTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTGACTCAT
**** ** * * *
11334076 -AGTTTAATCCCAATCA-TTTTTGTTTTCTGACTCATGGTTTAATCCT-GGTCATTTTTCATTTT
1 GA-TTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCA-TTTTCATTTT
* ** * * * *
11334138 TTGACTCATGATTTAATCTT-GGTCATTTTCATTTTCTGACTCTTGATTTAATTTCGGTCATTTT
63 CTGACTCATGATTTAAT-TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* * * * *
11334202 CATTTTTTGAC-CA-GAGGTTTAATCCTGGTCATTTTT-ATTTTTTGACTCATGGTTTAATTTTG
127 TATTTTCTGACTCATGA--TTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG
* * ** * * * ** * *
11334264 TTCATTTTT-ATTCTTTGACTTGTGATTTATTTCTAGTCATTTTC-AATTTCTGACAT-GT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTA-ATCTCGTCATTTTCTTTTTTTTGAC-TCAT
* **** * * * * * * **
11334322 GGTTTAATCCCCATCA-TTTTTATTTTGTGACTCATGGTATAATCTAGGTTGTTTTCATTTTCTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * * * * * ** *
11334386 ACTTATGGTTTACA-CTCAGTCATTTTCATTTTTTGACTCATGGTTTGATCCCTATTGTTTTGAT
66 ACTCATGATTTA-ATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* * * * * * ** * * * *
11334450 TTTTTGACTCCTGGTTTGATCCCGATTGTTTTTTATTTTTTGACTCGTGGTTTAATCTTGATCGT
130 TTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATC-T
* * * *
11334515 TTTT-AATTTTTGACTCTTAGTTTTAATCTCGATCATTTTC-ATTTTTTGACTCAT
193 TTTTCATTTTTTGACTCAT-GGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * ** ** * * * * * * *
11334569 GGTTTAATCTCAAT-TGTTTTTATTTTTTGGCTTGTGGTTTAAACTCGGTCATTTTCACTTTT-T
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCA-TTTTCT
** * * * * *
11334632 GACTTGTGATTTAATTTCAGTTATTTTCATTTTTTGACTCATGGTTTAATC-CCATTCATTTTAA
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTTA
* *
11334696 TTTTCTGACTCGTGGTTTCATTTTTTGACTTGTGGTTTAATCCTAGTCATTTTT-ATTTTCATAA
129 TTTTCTGA--C------TCA-----TGA-------TTTAATCCTGGTCATTTTTCATTTTC-TGA
* * * * *
11334760 CTCATGTTTAATCCCT-ATCATTTTCATTTTTTGACTCATGATTTAATCTCGATCATTTTC-ATT
173 CTCATATTTAAT-CTTGATCTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTT
* **
11334823 TTTTGATTTTT
236 TTTTGACTCAT
* * * * * * * * * *** *
11334834 GGTTTAGTCCTGGA-CGCTTTTCATTTTTTGACACCTGGTTTAATCCCAGTCGTTTTCATTTT-T
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * ** * * * * *
11334897 TATCTTC-T-AGTTTAA-TGCTAGT-AAATTCATTCTCTGACTCTTGGTTAAATCTTGGTCATTT
65 GA-C-TCATGA-TTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTT
* * * ** * *
11334958 TTCATTTTCTAACTCCT-AGTTTTATCCCAGT--TGTTTTCATTTT-TTAGCTCAAGATTTAATC
126 TT-ATTTTCTGACTCATGA-TTTAATCCTGGTCAT-TTTTCATTTTCTGA-CTC-ATATTTAATC
* * * * * * * * *
11335019 -TCAGTCATTTTCATTTTTTAACTCGTGGTTTAATCCCAATCGTTTT-TCATTTTCTGACTCAT
186 TTGA-TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCT-TTTTTTTGACTCAT
* ** ** * * *** *
11335081 GGTTTAATCCCT-AT-TGTTTTCATTTT-TAGACTTAG-GGTTTAATCTCAATCGTTTTTCATTT
1 GATTTAAT-TTTGATCACTTTTCATTTTAT-GAC-TCGTGATTTAATCTGGGTC-ATTTTCATTT
* ** * ** ** * ** * *
11335142 TTTGACTGGTGGTTTAATCCCTGTCATTTTCATTTTCTCACTTTTGGTTTAATCCCTATCATTTT
62 TCTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* ** ** * * ** * * * * *
11335207 CATTTTCCAACTTGTGGTTTAGTCCCAGTCATCTTT-ATTTTTTGACTTATGATTTAGTCCT-AG
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA-
* ** * * * * * *
11335270 TCATTTTCCATTTTTTGACTTGTGGTTTAATCCCAATCGTTTTC-ATTTTTTGATTCGT
190 TC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* *** * * * ** * *
11335328 GGTTTAA-TCCCAGTCA-TTTTCATTTTTTGACTCATTATTTAATCCCGATCATTTTTATTTTCT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * * * * * * *
11335391 AACTCTTGATTTAATTTCGATCATATTCATTTTCTAACTCGTGATTTCATC-CTAGTCGTTTTCT
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTT-T
* * * * * * **
11335455 TTTTTTTTACTCGTGTTTTAAT-TTCAATCATTTTT-ATTCTT-TGACTCATGATTTAA---T--
128 ATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATT-TTCTGACTCAT-ATTTAATCTTGA
** * * * *
11335512 T-TTAGTCATTTTTTTGACTCATGGTTTAATC-CGATTATTTTC-ATTTTCTGACACAT
190 TCTTTTTCA-TTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * ** * * * * * * *
11335568 GGTTTAATCTCAATC-GTTTTTATTTTCTGACTCATGATTTAATTCT-AGACGTTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAA-TCTGGGTCATTTTCATTTTCT
* * * * * * * * *
11335631 AACTAATGTTTTAATCCTC-GTCATTTTCATTTTTTGACTCATGCTTTACT-TCTAGTCATTTTT
65 GACTCATGATTTAAT-TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTT
* * ** * *** * * * * * *
11335694 ATTTTTTGAATTGTGTTTTAATCC--CAAAGGTTTTCATTTTCTGACTCTTGGTGTATTCTTGGT
128 ATTTTCTGACTCATGATTTAATCCTGGTCA-TTTTTCATTTTCTGACTCAT-ATTTAATCTTGAT
* * ** * *
11335757 CGTTTTTCATTTTCTAACT-AGTGGTTTAATCTTAATCATTTT-TCATTTTTTGACCCAT
191 C-TTTTTCATTTTTTGACTCA-TGGTTTAATC-TCGTCATTTTCT-TTTTTTTGACTCAT
* * ** * * * **
11335815 GGA-TTAA-TCTCAGT--CTTCTTTGTTTTCTTACTTGTGATTTAATTCT-AATCATTTTCATTT
1 -GATTTAATTTTGA-TCACTT-TTCATTTTATGACTCGTGATTTAA-TCTGGGTCATTTTCATTT
* * * * * ** * *
11335875 TCTGACTTAT-AGTTTAATCTCGATCATTTTTATTTTTTGACTTGTGATTTAATCTCAATCATTT
62 TCTGACTCATGA-TTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCA-TT
* * * * *
11335939 TTTAATTTT-TGACTCGTAATTTAATCCTGGTAATTTTT-ATTTACTGACTCGTGATTTAAT-TT
125 TTT-ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT
* * * * *
11336001 TAGTATTTTTCATTTTTTGACTCGA-AGTTTAATCTTAGTCATTTTTCATTTTTTTGACTC--
188 GA-TCTTTTTCATTTTTTGACTC-ATGGTTTAATC-TCGTCA-TTTTCTTTTTTTTGACTCAT
** * * * * *
11336061 -A-TT-AGGTTG-----TTTTCATTTCTA--ACTCATGATTTAATTTTGATCATTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTT-TATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * *** * * * * * **
11336116 GA-T-TTGAAGTTTACTCTGGGTCGTTTTCATTTTCTAAATCGTGGTTTAAT-TCTATTTGTTTT
65 GACTCATG-A-TTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTT
* ** * * * * **
11336178 TATACTT-TGACTTGTGATTTAAT-TTCAGTTATTTTT-ATTTTCTGACTCATGGTTTAATCCCG
127 TAT-TTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG
** * * *
11336240 ATCATTTTTCATTTTTTGACTTGTAGTTTAATCAT-GTTCATTTTC-ATTTGTTGACTCAT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTAATC-TCG-TCATTTTCTTTTTTTTGACTCAT
* * ** **
11336299 GATTTAATTCCT-ATCA-TTTTCATTTTCTGACTC-AAAGTTTAATCCT-AATCATTTTCATTTT
1 GATTTAATT-TTGATCACTTTTCATTTTATGACTCGTGA-TTTAAT-CTGGGTCATTTTCATTTT
* * * * * * **
11336360 CTAATTCAT-AGTTTAATTTCATTCATTTTTATTCTCTGACTCATGATTTAAT-TTTAGTCATTT
63 CTGACTCATGA-TTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTT
* * * * *
11336423 TCATTTTCTGACTCAT-AGTTTAATTTCAT--TCATTTTT-ATTCTCTAACTCATGATTGAATC-
126 TTATTTTCTGACTCATGA-TTTAA--TCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT
* * ** * * * *
11336483 AGCTGGTTTTCATTTTTTGACTCATGATTTAAGCCTGGTCATTTT-TATTTTTTGACTCAT
187 TGATCTTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTGACTCAT
* * ** * * * * * * *
11336543 GATTAAATCTCAATTA-TTTTCATTTTCTGACACGTGATTTAATCTCGCTCATTTTTATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
** * * * * * * *
11336607 ACTTGTGGA-TTAATCTCGGAT-GTTTTCATTTTCTGACCCATGGTTTAATCTCAATCGTTTTTG
66 ACTCAT-GATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* * * * * * * * ** * *
11336670 TTTTCTTACCCATGGTATAATCTTAGTC-GTTCTCATTTTCTGACTTGTGGTTTAATCCT-AGTG
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA-T-
* * * *
11336733 GTTTTT-ATTTTTTGACTCATGGTTTAATCCCGATAATTTT-TATTTTTTGACTCAT
191 CTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* *** * * * * ***
11336788 GGTTTAA-TCCCAGTCATTTTTCATTTTTTGA--AGTGGTTTAATCCCTGTCATTTTCATTTTCT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * * * * * * *
11336850 AACT-AGTGGTTTAATCTT-AGTCAATTTAATTTTCTTACTCATGATTTTATC-CTAATC-GTTT
65 GACTCA-TGATTTAAT-TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTT
* * * * *
11336911 CAGGTTTTTTGACTTATGGTTTAATCCCT-GTCA-TTTTCATTTTTTGACTTGCA-ATTTAATCC
127 TA--TTTTCTGACTCATGATTTAAT-CCTGGTCATTTTTCATTTTCTGAC-T-CATATTTAAT-C
* * * * * ** **
11336973 TTG-T-TGTTTTCATTTTTCGACTCGTGGTTTAGTCCTAGTCACTTTCAATTTTTT-ACTTGT
186 TTGATCT-TTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCTTTTTTTTGACTCAT
* * * * * * *
11337033 GGTTTAATCTTGATCA-TTTTCATTTTCTGACTCAT-AGTTTAAAT-TCGATCATTTTCATTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGA-TTT-AATCTGGGTCATTTTCATTTTC
* ** ** * ** * * * * * *
11337095 TAACTTGTGGCTTAA-TCCTGGTCGATTTTTATTTTTTGACTCGTAG-TTAATCTTGATCGTTTT
64 TGACTCATGATTTAATTTC-AATC-ATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* * * * * * * *
11337158 CATTTTTTGACTCATGATTTAATTCAGGTCATTTGTT-ATTTTTTGACTTATGGTTTAATCTCGA
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTT-TTCATTTTCTGACTCAT-ATTTAATCTTGA
* * * **
11337222 TCATTTTCATCTTTTGACTCATGGTTTAATCCCAGTCGATTTTC-ACTTTTTGACTC--
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-GTC-ATTTTCTTTTTTTTGACTCAT
* * * * * * * * * ** **
11337278 GCAGTTAAATCTCAGTCA-TTTTCATTTTCTAATTTGTGATTTAATTTTGATTGTTTTTCATTTT
1 G-ATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAA-TCTGGGTCATTTTCA-TTT
* * * * * * * * * * *
11337342 TTTGACT-TTTAGTTTAATCTCTATCATTTTCATTTTCTAACTCATAGTTTATTCTTGGT-TTTT
62 TCTGACTCATGA-TTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTT
* * ** * * *
11337405 TTCATTTTTTGACTTATGATTTAATTATGATC-TTTTTCATTTTCTAACTCGTGATTTAATC---
126 TT-ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG
* * * * ** * * **
11337466 --C-TTGTCATTTTTTGACTCGTGGTATAATCCTGGTCGCTTTC-ATTTTTTGGCTTGT
189 ATCTTTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCTTTTTTTTGACTCAT
* * * ** * * * * ** *
11337521 GGTTTAATATTGGT-TGTTTTCATTTTTTGACTCATGGTTTAATCCT-AGTTGTTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTCT
** * *
11337584 GACTTGTTATTTAAATTT-AATCATTTTCATTTT-TAGACTTATGGTTTAATCTCGATCATTTTT
65 GACTCATGATTT-AATTTCAATCATTTTCATTTTCT-GACTCATGGTTTAATCTCGATCATTTTT
* * * ** *
11337647 CATTTTCTAACTCATGGTTTAATCCTGGTCATTTTT-ATTTTCTGACTCGTGGCTTAAT-TTTAG
128 -ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA-
* * * * *
11337710 TCATTTTCATTTTCTT-ACTCGTGTTTTAATCTTGGTCGATTTTC-ATTTTTTGACTCAT
190 TCTTTTTCATTTT-TTGACTCATGGTTTAATC-TCGTC-ATTTTCTTTTTTTTGACTCAT
* * ** * ** * * * **
11337768 GCTTTAATCTTGAT-TGTTTTTATTTT-TGACTTATGGTTTAATTCT-AGTCGTTTTTTTTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAA-TCTGGGTCATTTTCATTTTCT
* * * * * * * *
11337830 -AGCTCGTGTTTTAA-TCCTAGTCATTTTCTTTTTCTCAATCATGGTTTAAT-TCCAATCATTTT
65 GA-CTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCT-CGATCATTTT
* * * * * * * *
11337892 TATTCTCTGACTCATGATTTAGTCCCGATCATTTTTCAATTCCTAACTCATGGTTTAATCTATG-
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT-TGA
* * * * * *
11337956 TCATTTTCATTTTCTGACCCATGATATATAATCTCGATCATTTTC-ATTTTCTGACTCAT
190 TCTTTTTCATTTTTTGACTCATGGT-T-TAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* ** * ** * * * * *
11338015 GGTTTAATGCTGGT-TGTTTTTATTTTCTGACTCATGGTTTAA-CTTTGGTCATTTTCATTTT-T
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATC-TGGGTCATTTTCATTTTCT
* ** ** ** * * * * *
11338077 AGACTCATGGTTTAATCCCGGTTGTTTTCATTTTTTGACTTATGGTTTAATTTTGATCATTTTCA
65 -GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* * *** * * * **
11338142 TTTTTTGACTCATGTTTTAATCCCAATCGA-TTTTCATTTTTTGACTCATGGTTTAGTC-CCAGT
129 TTTTCTGACTCATGATTTAATCCTGGTC-ATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA-T
* * * * **
11338205 -TGTTTTCATTTTCTT-ACTCATGGTTTAAT-TCCAGTCCTTTT-ATTTTCTAG-CTTGT
191 CT-TTTTCATTTT-TTGACTCATGGTTTAATCT-C-GTCATTTTCTTTTTTTTGACTCAT
* * * * * * * * ** * *
11338260 G-TGTTAA-TCTGATC-GTTTTCTTTTTCTCACTCATGGTTTAATTCT-AGTTGTTTTAATTCTC
1 GAT-TTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAA-TCTGGGTCATTTTCATTTTC
* * * * *
11338321 TAACTCATGATTGAA-TCCTAATCATTTTTCA-TTTCTTGACTCATGGTTTAATCCCCATCATTT
64 TGACTCATGATTTAATTTC-AATCA-TTTTCATTTTC-TGACTCATGGTTTAATCTCGATCATTT
* * * * * * *
11338384 TCATCTTT-TGACTCATGATTTAAT-CTCG--ATCGTTTCATTTTTTGACTTATGGTTTAAT-GT
126 TTAT-TTTCTGACTCATGATTTAATCCTGGTCAT-TTTTCATTTTCTGACTCAT-ATTTAATCTT
* * * * * **
11338444 CAGTCATTTTCATTTTCT-A-ACATGTGATTTAATC-CAGTCGTTTTCATTTTCTAATGA---AT
188 GA-TCTTTTTCATTTTTTGACTCATG-G-TTTAATCTC-GTCATTTTC-TTTT-TTTTGACTCAT
* * * * *
11338503 GATTTAATCTTGATCA-TTTTCATTTTCA-GACTCATGGTTTAATTCT-AGTCATTTTTATTTTC
1 GATTTAATTTTGATCACTTTTCATTTT-ATGACTCGTGATTTAA-TCTGGGTCATTTTCATTTTC
** * ** * ** * *
11338565 T-AGCTTGTGTTTTAATCCCAATCATTTGT--TTTTCTCACTTGTGATTTAAT-TCCAGTCATTT
64 TGA-CTCATGATTTAATTTCAATCATTT-TCATTTTCTGACTCATGGTTTAATCTCGA-TCATTT
* * * ** * * **
11338626 TT-TTCTCTTACTCGTGATTTAATTTTGGTC-GTTTTAATTTTCTGACTCATGATTTAAT-TCCA
126 TTATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT-TG
* * * * * * * * * **
11338688 AGCATTTTT-ATTCTCTGAATCTTGATTTAAT-TACGATCATTTTC-ATTCTCTGACTTGT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTAATCT-CG-TCATTTTCTTTTTTTTGACTCAT
* * * * * * * ** * *
11338746 GGTTTAATCTTAATCATTTTTCATTTTTTGAATCAT-AGTTTAATCACGATCATTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGA-TTTAATCTGGGTCATTTTCATTTTCT
* ** * ** * ** *
11338810 AACTTGTGATTTAA-TTCTGATTGTTTTTATGTTT-TGACTTGTGGTTTAATC-CCAGTCATTTT
65 GACTCATGATTTAATTTC-AATCATTTTCAT-TTTCTGACTCATGGTTTAATCTCGA-TCATTTT
* * * * * * *
11338872 TCATTTTTTGACT--TGCAATTTAATCCCGATCA-TATTCATTTTTTGAC-CTGTAGTTTAATCC
127 T-ATTTTCTGACTCATG--ATTTAATCCTGGTCATTTTTCATTTTCTGACTC-ATA-TTTAATCT
** * ** * *
11338933 TGATCACTTTCATTTTTTGACTCATGGTTTAATCTTGATTGTTTTC-ATTTTCTGACTCAT
187 TGATCTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* *** * * * * **** *
11338993 GGTTTAATCAGGGTCA-TTTTCATTTTTTGACTCATGGTTTAATCCCAATCATTTTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * * * * * *
11339057 ACTCGTGGTTTAATCTCGATCATTTTTTACTTTCTGAATTATGGTTTAATC-CTGGTCATTTTTA
66 ACTCATGATTTAATTTCAATCA-TTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTTTA
* * * * * * * ** * * * *
11339121 TTTTTTCACTCCTAATTTAATTCTGATCATTTTT-ATTTTTTGACTTGTGGTTTAATTTTGTTTG
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG-ATC
* * * **
11339185 TTTTTCACTTTTTGAC-CTATGG-TTAATTCTGGTCGTTTT-TCACTTTTTGACTCAT
192 TTTTTCATTTTTTGACTC-ATGGTTTAA-TCTCGTCATTTTCT-TTTTTTTGACTCAT
* * * * * * ** * *** *
11339240 GATTTAGTTATAAT-AGTTTTCATTTTTTTACTAATGGTTTAATCTCACTCGTTTTCATTTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCA-TTTTCT
* * * * * * *
11339304 GACTCTTTG-TTTAATCTCAATTATTTATCATTTTTTGACT-AGTGGTTTAATCTAGGTCATTTC
65 GACTC-ATGATTTAATTTCAATCATTT-TCATTTTCTGACTCA-TGGTTTAATCTCGATCATTTT
* * * * * * * * **
11339367 AAGTTTT-TCACTTATGGTTTAATCC----CA---GTCATTTTTTGACTCGTGGTTTAATC-ACA
127 TA-TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* * * * * *
11339423 GTCCTTATTC-TTTTTCTAACTCATGGTTCAATC-CTGATCGTTTTC-ATTTTCTGACTCAT
190 -T-CTTTTTCATTTTT-TGACTCATGGTTTAATCTC-G-TCATTTTCTTTTTTTTGACTCAT
* * * * * *** **
11339482 GGTTTAA-TTCGAGTCATTTTTCATTTT-TCAACTTGTGATTTAATCCAAGTTGTTTTCATTTAT
1 GATTTAATTTTGA-TCACTTTTCATTTTAT-GACTCGTGATTTAATCTGGGTCATTTTCATTT-T
* ** * ** * * * * ***
11339545 -TGACTTATGATTTAAACTCGATCACATTCATTTCCTGACTTATGATTTAAAC-CTGATCGCATT
63 CTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTT
* * ** * * * *
11339608 CATTTTCTGAGTCAT-AGTTTAATCCCAGTCATTTTTCAATATCTGACTCGTGGTTTAAT-TTCG
127 TATTTTCTGACTCATGA-TTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT-G
* * * * ** * * **
11339671 ATCATTTTCAATTTTTGACTCATGATTTCATCCTAATCATTTTC-ATTTTCTGACTTGT
189 ATCTTTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCTTTTTTTTGACTCAT
** * * * * * * * *
11339729 GATTTAATTTCAAT-AATTTTCATTTTTTGTCTCATGGTATAATTCCT--GTCGTTTTCATTCTC
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAA-T-CTGGGTCATTTTCATTTTC
* *** * * * * *
11339791 TGACTCGTGATTTAATTTTGGTCATTTTCATTTT-TGACTCGTGATTTAATTTTGATCATTTTCA
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* * ** * * *
11339855 TTTTCTAACTCATGGTTTAATCCCAGT--TGTTTTCATTTTCTAAC-CTATAATGTAATCTCGAT
129 TTTTCTGACTCATGATTTAATCCTGGTCAT-TTTTCATTTTCTGACTC-AT-ATTTAATCTTGAT
* * ** ** * ** * * *
11339917 CATTTTC-TTTTCTCTAACTTGTAATTTAATTCTAGTTGTTTAC-ATTTTCTGACTCAT
191 CTTTTTCATTTT-T-TGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTGACTCAT
* ** * * * * **** * * *
11339974 GGTTTAAACTTGGTCA-TTTTCATTTTTTGACTCATGGTTTAATCCCTATCGTTTTTAGTTTCTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * * * * * * *
11340038 ACCCATGATTTAA-TCCTAGTCTTTTTCTTTTCTCTAACTTC-TGATTTAATTTTGATCATTTTC
66 ACTCATGATTTAATTTC-AATCATTTTCATTT-TCTGAC-TCATGGTTTAATCTCGATCATTTTT
* * * * * * * * * *
11340101 ATTTTCTAACTCGTGGTTTAAACCTAGTCA--CTTCAATTTTCT-AGCTCATGGTTGAATCCTGG
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTC-ATTTTCTGA-CTCAT-ATTTAATCTTGA
* * * * * * * **
11340163 TCATTTTCATTTTCTGA--CGTGGTTGAATCCTAGTCATTTTC-ATTTTCTGACTTGT
190 TCTTTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCTTTTTTTTGACTCAT
* * * * * ** * * *
11340218 GGTTTAATCTTTG-TCA-TTTTTATTTTTTGACTCATGGTTTAATCACGATGACTTTCATTTTCT
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * ** * ** * *
11340281 AACTCATGGTTTAA-TTCAGGTATTTTTTTTTC-TTCTTCTGATTGGTAGTTTAAT-TCGATCGT
65 GACTCATGATTTAATTTCA---A--TCATTTTCATT-TTCTGACTCATGGTTTAATCTCGATCAT
* ** * * ***
11340343 TTTTACCTTT-TGACTTGTGGTTTAAT-CTGGATCA-TTTTCATTTTTTGACTCGCGGTTTAATC
124 TTTTA-TTTTCTGACTCATGATTTAATCCTGG-TCATTTTTCATTTTCTGACTC-ATATTTAATC
* * * * *
11340405 -TAATCATTTTT-ATTTTTTGACTCGTAGTTTAATCTGGATCATTTT-TATTTTTTGACTCAT
186 TTGATC-TTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * * * * * * * * *
11340465 CATTTAATCTAGGTCA-TTTTCATTTTCTGACTCAT-AGTTTGATCTCGATCATTTTTATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGA-TTTAATCTGGGTCATTTTCATTTTCT
* * * * * * **
11340528 GACTCGTGGTTTAA--TCGAAGCCATTTTCATTTTCTGACTCATGGTTTAATGTTGTTTGTTTTT
65 GACTCATGATTTAATTTC-AA-TCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* * ** * * * * * *
11340591 ATTTTTTAACTTTTAATTTAAT-CTCGATCATTTTT-ATTTTTTGACTCGAGATTTAATCTCGGT
128 ATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTC-ATATTTAATCTTGAT
*** * * * * * *
11340654 CTTTTTTCATTTTTT-AGCTTGGGGTTTAATCCCGATGACTTTC-ATTGTTTGACTCGT
191 C-TTTTTCATTTTTTGA-CTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * **** *
11340711 GATTTAATTTCGATCA-TTTTCATTTTCTGACTTGTTG-TTTAATCCCTAT-AGTTTTCATTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCG-TGATTTAATCTGGGTCA-TTTTCATTTTC
** ** * * * * * * **
11340773 TGACTTGTTG-TTTAATCCCTAT-AGTTTTCATTTTCTAACTTACGGTTTAATCTTGGTTGTTTT
64 TGAC-TCATGATTTAATTTCAATCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* * ** * * *
11340836 TCATTTT-TCAACTCA-CAGTTTAATCCTTATC-GTTTTCATTTTCTAACTCATGATTTAGTC-T
127 T-ATTTTCT-GACTCATGA-TTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT
* * * * **
11340897 AAGTCATTTTCATTTTTTGACTTATGGTTTAATC-CAAGTTATTTT-TGTTTTTTTGACTGGT
188 GA-TCTTTTTCATTTTTTGACTCATGGTTTAATCTC--GTCATTTTCT-TTTTTTTGACTCAT
* * * * ** * * * * *
11340958 GGTTTAATCTCGGT-TGTTTTCATTTTCTGACTCGTGGTTTAATCT-CGTCGTTTTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * ** * * ** * * * *
11341021 ACTCTTGGTTTAATCTCAGTTGTATTCATTTTTTGACTTGTGATTTAAACTTGAT-TTTTTTCA-
66 ACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT-AT
** * ** * * * * *
11341084 TTTCTTGACTTGTGATTTAAACCTAATC-GTATTCATTTGCTGACTCGTGGTTTAATCCTAACAC
130 TTTC-TGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAAT-CT-----
** * *
11341148 GTGATTTTATTCTAATCGTTTTCATTTTTTGACTTGTGGTTTAATCCCGATCATTTT-TATTTTT
187 -TG-----A-TC---T--TTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTT
*
11341212 TGACTCGT
239 TGACTCAT
* * * * * * *
11341220 GGTTTAATTCCT-ATCA-TTTTC-TTTCTCTAACTTGTGATTTAATTTTGGTCATTTTCATGTTT
1 GATTTAATT-TTGATCACTTTTCATTT-TATGACTCGTGATTTAATCTGGGTCATTTTCAT-TTT
* * * ** **
11341282 -TGACTCGTGATTTAATCCTT--ATCATTTTCACTTTCTGACTCCTAATTTAAT-TCTGATTGTT
63 CTGACTCATGATTTAAT--TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATT
* * * * *
11341343 TTCATTTTCTAACTCGA-GGTTTAATCCCT-TTCA-TTTTCATTTTCTAACTCATGATTTAATCC
125 TTTATTTTCTGACTC-ATGATTTAAT-CCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAAT-C
** * * * * * *
11341405 TTG-TCATTTTT--TTTTTTGACTTGTGATTTAATTTTGGTCATTTTC-ATTTTCTGACTTAT
186 TTGATC-TTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTGACTCAT
* * * * * * * * **** * *
11341464 GATTTAATCTTGGTCA-TTTTCATTTTCTAATTAGTGGTTCAATCCCAATCGTTTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTC-ATTTTCATTTTCT
* * * *
11341528 GACTCACGATTTAA-TCCTAATCATTTTCATTTTCTGACTTATGATTTAATCTCGATCATTTTTC
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT-
* * * * * * * **
11341592 ATTTTTTGAGTCATGGTTTAATCCCGATCA-TTTTCATTTTATCACTTGTTATTTAAT-TATGAT
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGAC-TCATATTTAATCT-TGAT
* * * ** ** * *
11341655 -TGTTTTCCATTTTTCGACTCATTGTTTAATTCTGGTTGTTTT-TCACTTTCTGACTCGT
191 CT-TTTT-CATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCT-TTTTTTTGACTCAT
* * * *** **
11341713 GATTTAATTTTGGT--CTTTTCAATTTTTTTGACTCATCG-TTTAATCTCAATTGTTTTCATTTT
1 GATTTAATTTTGATCACTTTTC-A-TTTTATGACTCGT-GATTTAATCTGGGTCATTTTCATTTT
** * *
11341775 CTGACTCATGATTTAATCCCACTCATTTTTCATTTTCTGACTCATGGTTTAATGCT-GACCATTT
63 CTGACTCATGATTTAATTTCAATCA-TTTTCATTTTCTGACTCATGGTTTAAT-CTCGATCATTT
* * * * * *
11341839 TCATTTTCTGACTCGTGGTTTAAT-TTGAGTCATTTTT-ATTTTTTGACTCCTAATTTAAT-TCT
126 TTATTTTCTGACTCATGATTTAATCCTG-GTCATTTTTCATTTTCTGACTCAT-ATTTAATCT-T
* * **
11341901 GATCATTTTT-ATTTTTTGACTCCTGGTTTAATTTAATTCAGGTTGTT-TTTCATTTTCTGACTC
188 GATC-TTTTTCATTTTTTGACTCATGGTTTAATCT-CGTCA--TT-TTCTTT--TTTT-TGACTC
11341964 AT
245 AT
* * * * * **** * *
11341966 GATTTAATTCTGAT-AGTTTTCATTTTTTTGACTAGTGGTTTAATCCCACTCGTTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCA-TTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * * * *
11342030 GACTCTTTG-TTTAATCTCAGTTATTTTTCATTTTTTGACTCGTGGTTTAATCT-AAGTCATTTT
65 GACTC-ATGATTTAATTTCAATCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTT
* * * * * * **
11342093 AATTTTTTGACTTATGGTTTAATCCTGGTCA---TT--TTTT-TGACTCGTGGTTTAATC-CCAG
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA-
* * * * * * * *
11342151 TCCTTATTC-TTTTTCTAACTCACGGTTCAATCTTGATCGTTTTC-ATTTTTTGACTGAT
190 T-CTTTTTCATTTTT-TGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* ** * * * * * **
11342209 GGTTTAATTCGGGTCATTTTTCATTTTCTGACCCGTGATTTAATC-AGGTTGTTTTCA-TTTCTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTC-T
* * * * * * * *
11342272 GACTTATGATTTAAACTTGGTC--TCATTTT--TTTCCTGACTTATGATTTAAACTTGGTCATAT
65 GACTCATGATTT-AA-TT--TCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTT
* * * ** * *
11342333 TCATTTTTTGACTCGT-AGTTTAATCCCAGTCATTTTTCATTATT-TGACTCATGGTTTAATTTT
126 TTATTTTCTGACTCATGA-TTTAATCCTGGTCATTTTTCATT-TTCTGACTCAT-ATTTAATCTT
* * * * * *
11342396 GAT-TATTTTCATTTTCT-ATCTCGTGATTTCATC-C-TAATTGTT-TTTATTTTCTGACAT-GT
188 GATCT-TTTTCATTTTTTGA-CTCATGGTTTAATCTCGTCATT-TTCTTT-TTTT-TGAC-TCAT
** * * * * *
11342455 GATTTAATTTCAATC-GTTTTCATATTT-TGTCTCATG-TTATAATTCCT--GTCGTTTTCATTC
1 GATTTAATTTTGATCACTTTTCAT-TTTATGACTCGTGATT-TAA-T-CTGGGTCATTTTCATTT
* * ** ** * **
11342515 TCTAACTCGTGATTTAATTTTGATCATTTTCATTTTCTGACTCAAAGTTTAATC-CCAGTTGTTT
62 TCTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTT
* * * * * *
11342579 TCATTTTCTTAC-CTATCATTTAAT-CTCGATCA-TTTTCTTTTCTCTAACTCATGATTTAATTC
126 TTATTTTCTGACTC-ATGATTTAATCCT-GGTCATTTTTCATTT-TCTGACTCAT-ATTTAA-TC
* * * * * * *
11342641 TAG-TCGTTTTCATTTTTTGACTCACGGTTTAAACTCGATCACTTTC-ATTTTTTGCCTCAT
186 TTGATCTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * * * * *** * * *
11342701 GATTTAATTTCGGTCA-TTTTCATTTTTTGACACATGGTTTAATCTCAATCGTTTTTAGTTTCTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * * * ** * * * *
11342765 ACCCATGATTTAA-TCCTAGTCTTTTTCTTTTCTCTAACTTTTGATTTAATTTTGATCATTTTCA
66 ACTCATGATTTAATTTC-AATCATTTTCATTT-TCTGACTCATGGTTTAATCTCGATCATTTTTA
* * * * * * * *
11342829 TTTTCTGACTCATGGTTTAATCCTAGTCATTTTTTATTTTCTGACTCGTGGTTTAATCCTGGTCA
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATCT
* * * *
11342894 TTTTCATTTTTTTGATTTATGGTTTAATCTTGGTCATTTTC-ATTTTTTGACTCAT
193 TTTTCA-TTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* *** * * * * * * *
11342949 GGTTTAATCCCGGTCAC-TTTCATTTTCTAACTCATGGTTTAAT-TCGGGTCTTTTTTCTTTTTC
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCT-GGGTC-ATTTTCATTTTC
* * * * * ** *
11343012 TGA-TTAGTGATTTAATCT-AGATCTTTTTTATTTTTTGACTTTTGGTTTAATCTGGATCATTTT
64 TGACTCA-TGATTTAATTTCA-ATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* * * * * * * *
11343075 CATTTTTTGACTCGTAATTTAAT-CTAGGTTA-TTTTCATTTTCTGACTCATGGTTCAATCTCGA
127 TATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* * * *
11343138 TCACTTTT-GTTTTTTGACTCGTGGTTTAACCTCG--ATGTTT-TTATTTTTTGACT--T
190 TC-TTTTTCATTTTTTGACTCATGGTTTAATCTCGTCAT-TTTCTT-TTTTTTGACTCAT
* * * * * * * *
11343192 GTAGTTTAATTTGGATCA-TTTTTATTTTTTAACTCATCATTTAATCTAGGTCATTTTCTTTTTC
1 G-A-TTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTC
** * * * **
11343256 TGACTC--GCAGTTTAATCTT-GGTCATTTTTATTTTTTGACTCGTGGTTTAAT-TCGGGCCATT
64 TGACTCATG-A-TTTAAT-TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATT
* * * * ****
11343317 TTCATGTTT-TGACTCGTGGTTTAA------T-A-TTATC-TGTTT-TGACTTGGGGTTTAATCT
125 TTTAT-TTTCTGACTCATGATTTAATCCTGGTCATTTTTCAT-TTTCTGAC-TCATATTTAATCT
* *** * * * * ** *
11343371 TGGTGGCTTTCA-TTTTTGACTGA-GGATTTAATTTCAATCCTTTTCACTTTTCTGACTTGC-T
187 TGATCTTTTTCATTTTTTGACTCATGG-TTTAATCTC-GTCATTTTCTTTTTTTTGAC-T-CAT
* ** * * ** * ** *
11343432 G-TTTAATCCTT-AT-TGTTTTCATTTTCTAACTC-ACAGTTTAATCTGGTTGTTTTTCATTTTT
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGA-TTTAATCTGGGTCATTTTCATTTTC
* * * * * * * * * * * *
11343493 TGACACACGGTTTAA-TCCTGATCGTTTTCATTTTCTAACTCGTGATTTAGT-TTGAGTCATCTT
64 TGACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTT
* * * * * * * ** * *
11343556 CATTTTTTAACTTATGGTTTAATCCAGGTCATTTTT--TTTTCTGATTGGTGATTTAATCTCAGT
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT-TGA
* * * * ** * *
11343619 TATTTTT-ATTTTCTGACTCGTGGTTTAATCTGGGTTGTTTTC-ATTTTTTGACTTAT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCT-CGTCATTTTCTTTTTTTTGACTCAT
* * * * * * * **
11343675 GGTTTAA-TCTCAGTC-GTTTTCATTTTTTGACTCCTGGTTTAATCTCAGTCATATTT--TTTT-
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCAT-TTTCATTTTC
* ** ** * * * * * **
11343735 T-TCTTGTGATTTAA-ACCTGATCGTATTCA-TTTCTGACTCGTGGTTTAATC-CTTATTGTTTT
64 TGACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTT
* * ** * ** * * * *
11343796 CATTTTCTAACTGGTGATTTAATTCTAAT--TGTTTTCATTTTTTGACT-GTGGTTTAATCTCGA
127 TATTTTCTGACTCATGATTTAATCCTGGTCAT-TTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* * * * * *
11343858 TCATTTTT-ATTTGTTGACTCGTGGTTTAAT-TCCTATCATTTT-TTTTCTCTAACTCAT
190 TC-TTTTTCATTTTTTGACTCATGGTTTAATCT-C-GTCATTTTCTTTTTTTTGACTCAT
* * * * * *
11343915 GATTTAA-TTTAAGTCA-TTTTCATTTTTTGACTCCTGATTTAATCCT-CGTCATTTTTATTTTT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTC
** * * * * * *
11343977 TGACTTGTGATTTAA-TTCTAGTCGTTTTCATTTTTTGACTTAT-G----ATTTCG-T--TTTTC
64 TGACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* ** * ** * * *
11344033 ATTTTCTGACTCACGATTTAATCCTAATCA-TTTTCATTTTTTGACTTGTGATTTACTATCGATC
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATC
* * * *
11344097 ATTTTTCATTTTTTGAGTCATGGTTTAATCCCAATCATTTTC-ATTTTTTGACTCAT
192 -TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * *** * * * * *
11344153 GGTTTAATTCTG-TTGTTTTTCACTTTCTGACTCATGATTTAAT-TATGGTCATTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCT-GGGTCATTTTCATTTTCT
* * * * * * * *
11344216 GATTCATGGTTTAATCTCAGTCGTTTTAATTTTTTGACTCATGATTTAATC-C-AGTCATTTTTT
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCA-TTTTT
* * * * * * * * *
11344279 AATTTTCTAACTAATGGTTTAATGCTGATCA-TTTTCA-TTTCTAACTCGTGGTTTAAT-TTGGG
128 -ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT-GA
* * * * * *
11344341 TCATTTTCATTTTCTGAC-CTATGGTTTAAACTCAGTCGTTTTC-ATTTTTTAACTCAT
190 TCTTTTTCATTTTTTGACTC-ATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* **** * * * ** * * ** ** * *
11344398 GGTTTAATCCCAATC-GTTATTCTTTTTTTGACTTTTGATTCAACCTCAGTTGTTTTCTTTTTTT
1 GATTTAATTTTGATCACTT-TTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * *
11344462 AACTCATGATTTAA--TCATGGTCGTTTTTCACTTTT-TGAC-CTATGATTTAATCTCCATCATT
65 GACTCATGATTTAATTTCA--ATC-ATTTTCA-TTTTCTGACTC-ATGGTTTAATCTCGATCATT
* * * * * * *
11344523 TTCA-TTTCTTGACTCGTGATTTAAACCCGGTC-GTATTCATTTTCTGACTCATGCTTTAAT-TC
125 TTTATTTTC-TGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT-
* * * * *
11344585 TGGTCATTTTT-ATTTTTTGACTCATTGTTTAATCCCGATCGTTTTC-ATTTTTTGACTCAT
187 TGATC-TTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * * * * * *** **
11344645 GATTTAATCTTGGTCA-TTTTTATTTTCTAACTTGTGATTTAATTTCAATTGTTTTCATTTT-TG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * * ** * * * *
11344708 ACTCATGGTTTAATTCCTATCATTTTCATTCTCTGACTTATAATTTAATTTTGGTCATTTTCATT
66 ACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTATT
* * * *
11344773 TGT-TGACTCGTGATTTAAT-TTCGATCA-TTTTCATTTTCTGACTCAT-TGTTCAATCCATG-T
131 T-TCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCATAT-TT-AAT-CTTGAT
* * * * * * * * * *
11344833 CATTATCTTTTTTTTGACACATGATTTAATC-CTGACTGTTTTCTTTTCTTTGATTTAT
191 CTTTTTC-ATTTTTTGACTCATGGTTTAATCTC-GTC-ATTTTCTTTTTTTTGACTCAT
* * * * * * * *
11344891 GATTTAATTTT-AGTCA-TTTTCATTTTTTGACTTGCGGTTTAATCTCGGTTATTTTTATTTTTT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * * * **
11344954 GACTCATGATTAAATTTCAATCGTTTTCATTTTCTAACACATGATTTAATCTTGATTGTTTTTAT
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* * * * * ** *
11345019 TTTTTGAAT-AGTGATTTAATCCTAGTCA-TTTTCGTTTCTCTAACTTGTGATTTAATTTTGATC
130 TTTCTGACTCA-TGATTTAATCCTGGTCATTTTTCATTT-TCTGACTCAT-ATTTAATCTTGATC
* * * * ** **
11345082 ATTTTCATTTTCTAACTCGTGGTTTAATCTCAGTTGTTTT-GATTTTTTGACTCAT
192 TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * * * * * * *
11345137 GACTTAATCTTGGTCA-TTTTCATTTTCTGACTTGTGGTTTAATCCT-GATTATTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTCT
* * ** * * * * ** * *
11345200 AACTCATGGTTTAATCCCGATCAATTTAATTTTTTGACTTGTGGTTTAATAC-AGGTCATTTTTC
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAAT-CTCGATCATTTTT-
* * ** ** * * *
11345264 TTTTTTTGACTGGT-AGTTTAATCCCAGTCA-TTTTCATTTTTTGACCTC-TAATTTAATTTTCA
128 ATTTTCTGACTCATGA-TTTAATCCTGGTCATTTTTCATTTTCTGA-CTCAT-ATTTAATCTTGA
* * * * * * *
11345326 TCATTTT--TTCTCTGTCTCATGATTTAATTTCG--ATTTTTTTCATTTTTTGACTCAT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCTCGTCATTTTCTT--TTTTTTGACTCAT
* ** * * * * * * *
11345381 -AGTTTAATCTCAACCA-TTTTCATTTTTTAACTTGTGGTTTAATCTTGGTCATTGTCATTTTCT
1 GA-TTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* *** * ** * * * * **
11345444 AACTTGGGGTTTAATCTT-GGTCTTTTTCATTTTCTGAC-CTAAGGTTTAGTC-CTAATTGTTTT
65 GACTCATGATTTAAT-TTCAATCATTTTCATTTTCTGACTC-ATGGTTTAATCTC-GATCATTTT
* * * * * **
11345506 TATTTTCTAACTCATGATTTAAATCC-GATC-TTTTTTATTTTTTAACTTGTGATTTAATCCTTG
127 TATTTTCTGACTCATGATTT-AATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAAT-CTTG
** * * * * *
11345569 -TCATTTTT-ATTTTTTGACTCGCGATTTAATCCCAGTCGTTTT-TCATTTTTTGACTCGT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCT-TTTTTTTGACTCAT
* * * * * * * *
11345627 -AGTTTAATCTCGATCATCATTTTTCATTTTTTTACTCATGGTTTAATCTCGATCATTTTCATTT
1 GA-TTTAATTTTGATCA-C--TTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTT
* * * * * ** * *
11345691 TCTGAGTCATGATTTAATCT-AGGTCATTTTTCTTTTTTTGACTGGTGGTTTAATC-CTAGTCGT
62 TCTGACTCATGATTTAATTTCA-ATCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCAT
* * * * * * ** * * *
11345754 TTTCATTTTTTGA-TTACTGGTTTAATCTTGATTGTTTTTCATTTTCTAACAT-GTGAATTAAAT
124 TTTTATTTTCTGACTCA-TGATTTAATCCTGGTCATTTTTCATTTTCTGAC-TCAT--ATTTAAT
* * ** * * * * * * *
11345817 C-T-AGCTATTTTCATTTCTTGACTTGTGATTTAAACTCGATCATATTC-ATTTTCTAACTCGTT
185 CTTGATCT-TTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTC-AT
** * * * * * * ** *
11345879 G-TTTAATCCTGATCAGTTTT-ATTTTCTAACTTGTGATTTAAT-TCAGATTGTTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCT-GGGTCATTTTCATTTTCT
* * * * * * * * *
11345941 GACTCACGGTTTAA-TCCTAGTCATTTTCATTTTTTGAGT-AGTGGTTTAATATTTG-TCGTTTT
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCA-TGGTTTAAT-CTCGATCATTTT
* * * * * * * *
11346003 CATTCTCTGACTCATGATTTAAT-TTTGT-TTGTTTTCATTTTCTTACTCATGATGTAATCCCT-
127 TATTTTCTGACTCATGATTTAATCCTGGTCAT-TTTTCATTTTCTGACTCAT-ATTTAAT-CTTG
* * * ** *** * *
11346065 AT-TGTTTTCATTTTCTAACTCATGATTTAAT-TCTGAAAGTTTT-TAGCTTCTAACTCAT
189 ATCT-TTTTCATTTTTTGACTCATGGTTTAATCTC-GTCA-TTTTCTTTTTTTTGACTCAT
* **** * * * * *** **
11346123 GGTTTAATCCCAATCA-TTTTCATTTTTTGACCCATGATGTAATCCCTGTGGTTTTCAGTTTT-T
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCA-TTTTCT
* ** * * * * ** * *
11346186 CACTTGTGATTTAA-TTCTAGTAATTTTCATTTTTTGACTCGTGGTTCCATCCCGATCA-TTTTC
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* * * * ***
11346249 TTTT-TGACT-AGTGGTTTAAT-CTCAGTCATTTTT-ATTTTTTGACTTATAGTTTAATCCCAAT
129 TTTTCTGACTCA-TGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCATA-TTTAATCTTGAT
* * * ** * **
11346310 CATTTTT-ATTTTCTGACTCATGGTTTAATTTAGGTTGTTTTC-ATTTTTTGACTTGT
191 C-TTTTTCATTTTTTGACTCATGGTTTAATCT-CGTCATTTTCTTTTTTTTGACTCAT
* * * * * * * * **** *
11346366 GGTTTAATCTCTG-TC-GTTATTCTTTTTCTAACTCATGGTTTAATCCCAATCCTTTTCATTTTC
1 GATTTAAT-TTTGATCACTT-TTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTC
* * * * * * * *
11346429 TGACTCGTGATTTAA-TCCAGTCGTTTTTCATTTTTTAAGTCATGATTTAATC-CTGATCATTTT
64 TGACTCATGATTTAATTTCAATC-ATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTT
* * *
11346492 TA-TTTCTTGACTCATGATTTAAAT-GTGGT--TGTATTCATTTTCTGACTCATAGTTTAATCTC
127 TATTTTC-TGACTCATGATTT-AATCCTGGTCAT-TTTTCATTTTCTGACTCATA-TTTAATCTT
* * * * ** * **
11346553 GGT-TGTTTTTATTTTCTGACTCGTGGTTTAATC-C-T-ATACATCTTTTTTTT-ATTGGT
188 GATCT-TTTTCATTTTTTGACTCATGGTTTAATCTCGTCAT-TTTCTTTTTTTTGACTCAT
* * * ** * * ** *
11346609 GGTCTAA--TGGA-CATCGTTTTCATTTCCTGACTAGTGGTTTAATACT-TATCGTTTTCATTTT
1 GATTTAATTTTGATCA-C-TTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTT
* * * ** *
11346670 GTGACTCATCATTTAA-TCCGGGTCATTTTCATTTTCTAACTCATGGTTTAAT-TCGAATCATTT
63 CTGACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCG-ATCATTT
* * * *** * * * *
11346733 TCATTTTTTGACTCATGGTTTAATTGGGGTCA-TTTTCATTTTCTTACTCATGGTTTAATCCTGG
126 TTATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* * * * * *
11346797 TCATTTTCATTTTCTGACTCATGGTTTAATCTCAATCATTTT-TCATTTTTTGAATCTT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCT-TTTTTTTGACTCAT
* * * *** ** * * * * * * * * *
11346855 GGTTTAATCTTGGTTGTTTTTTTTTTTTTTCACTCATGATTTAATTTTGATCGTTTCCATTTTTT
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * ** ** * * * *
11346920 GAATTC-TGGTTTAA-TTCTGGTCATTTTCCACTTTT-TGACTTGTGATTTAATTTCAATCGTTT
65 G-ACTCATGATTTAATTTC-AATCATTTT-CA-TTTTCTGACTCATGGTTTAATCTCGATCATTT
* * * * *
11346982 TCATTTTCTGACTCATGGTTTAAT-CTCGATCATTTTT-ATTTTCTGACTCATGCTTTAATCCTG
126 TTATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG
* * * *
11347045 GTCATTTTTCATTTTCTAACTCACT--TTTAATCTTGATC-TTTT-TTCATTTTTTGACTCAT
189 ATC-TTTTTCATTTTTTGACTCA-TGGTTTAATCTCG-TCATTTTCTT--TTTTTTGACTCAT
* * * * * * * *
11347104 GGTTTAATCTCGATC-CTTATTCTTTTTTTTGACTCGTGGTTTAATCTCGATCATTTTTTCATTT
1 GATTTAATTTTGATCACTT-TTC-ATTTTATGACTCGTGATTTAATCTGGGTCA--TTTTCATTT
* * *** ** * * * *
11347168 T-TGACTCGTGATTTAATCTGGGTTGTTTTCA-TTTCTTGACTCATGATTTAAACCCGATCATAT
62 TCTGACTCATGATTTAATTTCAATCATTTTCATTTTC-TGACTCATGGTTTAATCTCGATCATTT
** * * ** * * *
11347231 TTATTTTCTGACTTGTGGTTTGATCCCAGTCA-TTTTCTTTTTTTGACTCATGATTTAATCCT-A
126 TTATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* ** * * * **
11347294 GT-TGTTTTCATTTTCTGACTCATAATTAAATTTTGATCATTTT-AATTTTTT-ACTCAT
190 -TCT-TTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * * * * * *
11347351 GGTCTAATTCCTG-TCA-TTTTCATTCTT-TGACTCATGATTTTATTTTGATCACTTTT-ATTTT
1 GATTTAATT-TTGATCACTTTTCATT-TTATGACTCGTGATTTAATCTGGGTCA-TTTTCATTTT
* * *** * * * *
11347412 ATGACTCGTGATTTAATTTTGGTCATTTTCATTTTCTGACTCATAGTTTAGTCTTGATTATTTTT
63 CTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* * * * * *
11347477 ATTTTTTGATTCATGATTTAAT-CTCGATCA-TTTT--TTTTCTTTAGCACATGATTTAAT-TTC
128 ATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTC-TGA-CTCAT-ATTTAATCTTG
* ** * * * ** * * *
11347537 AGTCATTTTCATTTTTTGACTTGTGGTTTAAACCCACTTGTTTTC-ATTTTCTGACTTAT
189 A-TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * * * * * ** * * * *
11347596 GATTTAATTTTGGTCA-ATTTCATTTTTTGACTTGTGGTTTTATCCT-AATCGTTTTTAGTTTAT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTCT
* * * * * * * * * * *
11347659 GACCCATGATTTAA-TCCTGATCTTTTTCTTTTCTCTAACTCGTGATTTAATTTCTATCGTTTTT
65 GACTCATGATTTAATTTC-AATCATTTTCATTT-TCTGACTCATGGTTTAATCTCGATCATTTTT
* * * * *
11347723 ATTTTTTGACTCGTGGTTTAATCCCCATCGTTTTTGCTTTCTGACATTTTCATTTTCTGAC-CTG
128 ATTTTCTGACTCATGATTTAAT--CC-T-G-----G---TC--A-TTTTTCATTTTCTGACTC-A
* * * *
11347787 TGATTTAATCCATG-TCATTTTT-ATTTTTTGACTCATGATTTAATTCTAGTCGATTTTC-ATTT
177 T-ATTTAAT-CTTGATC-TTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTC-ATTTTCTTTTT
* * *
11347849 TCTGAATCGT
237 TTTGACTCAT
* ** * * * ** *
11347859 GGTTTAATCCT-AGTCA-TTTTCATTTTTTGACTCATGATTTAGTTCT-AATCATTTTCATTCTC
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTA-ATCTGGGTCATTTTCATTTTC
** * * * * * * * *
11347921 TGACTTGTGATTTAATCT-AGAT-AGTTTTCA-TTTCTTGACTCGTGATTTAAACCCGGTCGTAT
64 TGACTCATGATTTAATTTCA-ATCA-TTTTCATTTTC-TGACTCATGGTTTAATCTCGATCATTT
* * * ** * * ** * *
11347983 TCATTTTTTGACTAATGGCTTAATCTTGATCA--TTT--TTTTCTGACTTGTGGTTTAATCTGGA
126 TTATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* ** * * * *
11348044 TCATTTTCATTTTTTGACTTGTGGTTTAATTTGGGTCATTTT-TATCTTTTGACTCAT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCT-CGTCATTTTCTTTTTTTTGACTCAT
* * * * * * ** *
11348101 GGTTTAATCTCGATC-GTTTTCATTTTTTGACTCATGATTTAATCCCGATCATTTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCA-TTTTCATTTTCT
* * * * * * * * * * * * * * *
11348165 CAATTACGGTTTAA-TCCGGATCATTTTTATTTTTTAAATCATGATTTAATTTTGATCATTTTCA
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* * ** * * * *
11348229 TTTTCTAAATTGTGGTTTAA-CTTTGGTCATTTTCTACA--TTCTGACTCGTGATTTAATTTTGA
129 TTTTCTGACTCATGATTTAATC-CTGGTCATTTT-T-CATTTTCTGACTCAT-ATTTAATCTTGA
* * * * * * *
11348291 TCATTTTCATTTTTTGACTTACGATTTAATCTTGGTCATTTTC-ATTTTCTGACTCAT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* * * * * *
11348348 GGTTTAATCTCGATCATTTTTCATTTTCA-GACTCG-CAGTTTAATCCT-AGTCATTTTTCATTT
1 GATTTAATTTTGATCACTTTTCATTTT-ATGACTCGTGA-TTTAAT-CTGGGTCA-TTTTCATTT
* * * * * * *
11348410 TTTGACTCATTG-TTTAA-TCCAGGTCATTTTCATTTTTTGACTCGTGGTTTAATCTTGGTCATT
62 TCTGACTCA-TGATTTAATTTCA-ATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATT
* * * * * * *
11348473 TTTATTTT-TGACTCGA-GGTTTAATCCT-ATC-GTTTTCTTTTTCTAACTCGTGGTTTAATCCT
125 TTTATTTTCTGACTC-ATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAAT-CT
* * * * * ** * ** * *
11348534 AGTTGTTATT-ATTTTTTCTAACTTGTGGTTTAATCCTAGTTGTTTT-TCATTTTTTGACTCTT
187 TGATCTTTTTCA-TTTTT-TGACTCATGGTTTAAT-CTCGTCATTTTCT-TTTTTTTGACTCAT
* * * * * * * **** ** * *
11348596 GATTTAATCTAGGTCACTTTT-ATTTTTTTACTCATGATTTAAACCCTATTGTATTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * * * * ** * * * * * * * *
11348660 GCACGTGGTTTAA-TCCTGGTCTTTTTCATTTTTTGGCTCGTGGTTTGATCTCGGTCGTTTTCAT
66 ACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* ** * * * * * *
11348724 TTTTTGACTCATGATTTAATTTTGATC-GTTTTCATTTTTTGACTCATGGTTTAATTATTG-TCA
130 TTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAA-TCTTGATCT
* * * * * * * ** * **
11348787 TTTTCATTTTTTGGCACGTGATTTTATTTCAGTCGTTTTC-AGTTTTTGAATTGT
193 TTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
** ** * * * * * ** *
11348841 GATTTAATTTCAATCA-GATTCATTTTTTGTCTCAT-AGTTTAATCTTGATTGTTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGA-TTTAATCTGGGTCATTTTCATTTTCT
* * * * ** **
11348904 GACCCGTGATTGAATCTCAATCATTTTTTTTTCTCTGA-T-ATGTGATTTAAT-T-GTAGTCGCT
65 GACTCATGATTTAATTTCAATCATTTTCATTT-TCTGACTCATG-G-TTTAATCTCG-A-TCATT
* * * * * * * **
11348965 TTCATTTTCTTACTCATGGTTTAA-ACTCAGTCA-TTTTCATTTTTTGAC-CTTTGATTTAATAA
125 TTTATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTC-AT-ATTTAATCT
* * * * * * * * *
11349027 TGATCTTGTTCTTTTCTTTGACTTATGATTTAATTTTGATCATTTTC-ATTTTCTAACTCAT
187 TGATCTTTTTCATTT-TTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * * * *** *** * *
11349088 GGTTTAATTCCTG-TCA-TTTTCATTTTCTAACCCACAATTTAATCCCTGTCATTTTTATTTTTT
1 GATTTAATT-TTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
** * * * * *
11349151 GACTCATGATTTAA-TTCTGGTCATTTTCATTTTTTAACTCATGATTTAATCTCGATCGTTTTCA
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* * * * *** * ** *
11349215 TTTTCTAACTAATGGTTCAATCCCAATCGTTTTTCATTTTCTGACTCATAGTTTAATCCCGATCG
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCATA-TTTAATCTTGATCT
* * * ** *
11349280 TTTTCATTTTTTGGCTAATGGTTTAATCTCATTCACTTTT-TAGTTTTTGAATCAT
193 TTTTCATTTTTTGACTCATGGTTTAATCTC-GTCA-TTTTCTTTTTTTTGACTCAT
* ** ** * * * * * ** *
11349335 GGTTTAATCCT-AGT-TGTTTTCATTTTCTAACTCGTGATTTAATTTTGATTGTTTTCATTTTTT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* * * * *
11349398 AACTCGTGATTTAATTTCAATCA---T--TTTTC--AC-AAT--TTTGAT-T-G-T--TTTTAAC
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA-
* * ** * ** * *
11349448 TTTT-TGACTCTTGATTTGATTTTGATTGTTTTT-AGTTTT-TGACT-AGTGGTTTAATCCCT-A
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCA-TTTTCTGACTCA-T-ATTTAAT-CTTGA
* ** * * * *
11349508 TCGTTTTCATTTTTTGACTCGCGATTTAGT-TCTGATCATTTTC--ATTTTTGACTTAT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-G-TCATTTTCTTTTTTTTGACTCAT
* * * * *** * * * * * *
11349564 GGTTTAATCTGGGTTGTTTTTCTTTTTCTGACTCGTGGTTTAATCCT-GATCGTTATTCTTTTTC
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATT-TTCATTTTC
* * * * * *
11349628 TAACTCCT-AGTTCAA-TCCTAGTCATTTTCATTTTTTGACTCATGGTTTAATC-CTGATCATTT
64 TGACTCATGA-TTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTT
* * * *
11349690 TTCATTTTTTGAC-CAATGATTTAAT-CTCGATC-GTTTTCA-TTTCTTGACTCATGATTTAAAC
126 TT-ATTTTCTGACTC-ATGATTTAATCCT-GGTCATTTTTCATTTTC-TGACTCAT-ATTT-AAT
* * * * * ** * * * *
11349751 CCT-ATCGTATTCA-TTTCTAACTTGTGGTTTAATCTCGATCATTTTC-ATTTTCTAACTCCT
185 CTTGATCTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* ** * * * *** * *
11349811 GGTTT-ATCCT-AGTCA-TTTTCATTTTCTGACTCATGATTTAATTTCTATCGTTTTCATTTTTT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* ** * ** * * * ** * * *
11349873 TACTTGTGGTTTAA-TTCTTGTCGTTTTCATTATCT-AGCTCGTAATTTAAAT-TTGGTCATTGT
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGA-CTCATGGTTT-AATCTCGATCATTTT
* ** ** * *
11349935 CATTTT-TGACTTGTGATTTAATTTTGGTCA-TTTTCCTTTTCTGAC-CATGGTTTAATCTTGAT
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGAT
* * * * ** * *
11349997 CATTTTT-A-TTTCTAACCCATGATTTAATCTCGGTTGTTTTCTTTTCTCTGACTCAT
191 C-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
*** ** * * * * * *
11350053 GATTTAATTCCAAT-TGTTATCATTTTTTGACTTGTGGTTTAATCTCGATCACTTTT-ATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCA-TTTTCATTTTCT
** * * * **
11350116 GACTTGTGATTTAATTTCAGTTATTTTCATTTTCTAACTTGTGGTTTAATCTCGATCATTTTTAT
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* * * * * *
11350181 TTTTTGAAT-AGTGATTTAATCCTGGTCA-TTTTCTTTTCTCTAACTCATGATTTGAT-TTCAAT
130 TTTCTGACTCA-TGATTTAATCCTGGTCATTTTTCATTT-TCTGACTCAT-ATTTAATCTT-GAT
* * * * * * **
11350243 -TATTTTCATTTTTTGACTCGTGGCTTAATCCCAATCGTTTT-TATTTTTTGACTTGT
191 CT-TTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
**** * * * * * * *
11350299 GATTTAATCCCAATTGA--TTTCATTTTTTGGCTCGTGGTTTAATATAGGTCATTTTTCTTTTTC
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCA-TTTTCATTTTC
* ** * ** * * * * * *
11350362 TAACTGGTTG-TGTAATCCCGATCATTTTCATTTTCTGA-T-GTGATCTAATCTTGGT--TGTTT
64 TGACT-CATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCAT-TTT
* * * * ** **
11350422 TCTTTTCTTTGTCTTATGATTTAATTCTGGT--TTTTT--TTTT-T-ACTTGTGGCTTAATCTCT
127 TATTTTC--TGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCT-T
** ** * * *
11350481 -ATCATTTTT-ATTTTTTGACTTGTAATTTAAATTTGGTCATTTTC-ATTTTTTGA--C--
188 GATC-TTTTTCATTTTTTGACTCATGGTTT-AATCTCGTCATTTTCTTTTTTTTGACTCAT
* * * ** * *
11350535 ---TT-A-----ATCGC-TTTCATTTTCTGACAT-GTGGTTTAATCCCGATCATTATCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGAC-TCGTGATTTAATCTGGGTCATTTTCATTTTCT
* *** ** * * *
11350589 AACTCA-GAGTTT-ATTCCTTGTTGTTTTTTATTTTCTGAC-C-TGGGGTTTAATC-CCAGTTAT
65 GACTCATGA-TTTAATT--TCAATCATTTTCATTTTCTGACTCAT--GGTTTAATCTCGA-TCAT
* * ** * * ** ** *
11350649 TTTAATTTTCT-ACCTCGTGATTTAAATCC-AATCA-TTTTCTTTTTTTTTCTTGTGGTTTAATC
124 TTTTATTTTCTGA-CTCATGATTT-AATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATC
* * * * * *
11350711 TTTG-TCATTTTT-ATTTTCTAACTTATGATTTAATCCCAGTCATTTT-TAATTTTTTGACTCAT
186 -TTGATC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCT-TTTTTTTGACTCAT
* ** * * *
11350773 GGTTTAATCCTGAT--CTTTTCATTTTTTGACTCGTGATTTAATCTGGATCATTTTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
** * ** * * * * ** *
11350836 ACTTGTGGTTTAATCCCGATC-TTTT--TTTTTTTACTTACAGTTTAATCCCGATCATTTTTAGT
66 ACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA-T
* * * * **
11350898 TTT-TGACTCATGATTTAAT-TTGAGT--TGTTTTCATTGTCTAACTCATGGTTTAATCCCGATC
130 TTTCTGACTCATGATTTAATCCTG-GTCAT-TTTTCATTTTCTGACTCAT-ATTTAATCTTGAT-
** * * * * *
11350959 CTTTTTC-TTTTTTGACTGGTGGTTTAAACTCGATCATTTTC--ATTTCTGAGTCGT
191 CTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* ** * * * * * *
11351013 GGTTTAATTCGGGT-AGC-TTTCATTTTCTGACTCATGGTTT-ATCCT-GATCATTTTCATTTTT
1 GATTTAATTTTGATCA-CTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTC
* * * * * * * * **
11351074 TGACTCCTGGTTTAA-TCCTAATCGTTTTTCATTTTCT-A-ACATGTGAATTAAAC-CTGGTTGT
64 TGACTCATGATTTAATTTC-AATC-ATTTTCATTTTCTGACTCATG-G-TTTAATCTC-GATCAT
* * * * * *
11351135 TTTCA-TTTCTTAACTCATGATTTAAACCT-G-AATGTATTCATTTTCTGACTCATGGTTTAATC
124 TTTTATTTTC-TGACTCATGATTTAATCCTGGTCAT-TTTTCATTTTCTGACTCAT-ATTTAATC
* * * * * * * *
11351197 TTGATCATTTTCATTTTCTAACTCATGATTTAATTTTGATCGTTTTC-ATTTTTTGACTC-T
186 TTGATCTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * * *
11351257 TAGTTTAATCCTTG-TCAC-TTTCATTTT-TGGACTCGTGGTTTAACTCT-TGTCATTTTCATTC
1 GA-TTTAAT-TTTGATCACTTTTCATTTTAT-GACTCGTGATTTAA-TCTGGGTCATTTTCATTT
* * * * * * * *
11351318 TCTGACTCATGACTTAATTTCAGTCATTTTCATTTTCTAACTCGTGATTTAATCCCTATCGTTTT
62 TCTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* * * * * * **
11351383 CATTGTT-TGACTCGTGATTTAAT-TTTG-AATGTTTTCGTTTTCTGACTCATGGCTTAATCTT-
127 TATT-TTCTGACTCATGATTTAATCCTGGTCAT-TTTTCATTTTCTGACTCAT-ATTTAATCTTG
* * * * * * *
11351444 AGTCGTTTTCATTTTCTGAC-CTATGATTTAATCCCTGTCGTTTT-TATTTTTTGACTCGT
189 A-TCTTTTTCATTTTTTGACTC-ATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * * * * * * *
11351503 GATTTAATTTTGGTCA-TTTTCATTTTCTAACTCATGGTTTAATCCT-GGTCCTTTTCTTTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTCT
* ** * ** * * *
11351566 GATTGGTGGTTTAATCTT-GGTCATTTTTCATTTT-TGGATTCATAGTTTAAT-TCTAGTCATTT
65 GACTCATGATTTAAT-TTCAATCA-TTTTCATTTTCT-GACTCATGGTTTAATCTCGA-TCATTT
* * * * * *
11351628 TCATTTTTTGAC-CATGGTTTAAT-CTGGATCA-TTTTCATTTTCTAACTCATGGTTTAATCCT-
126 TTATTTTCTGACTCATGATTTAATCCTGG-TCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG
* * * *
11351689 ATTCATTTT-ATTTTTTGATTCATGGTTTAATC-CTGATCATTATTC-TTTTTCTGACTTAT
189 A-TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-G-TCATT-TTCTTTTTTTTGACTCAT
* * * * * * **** *
11351748 GGTTTAATCTTGATC-GTTTTCATTTTCTGACTCATGGTTTAATCCCAATCGTTTTTCAGTTTT-
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTC-ATTTTCA-TTTTC
** * * * * * * * *
11351811 TGACTTGTGATTTAA-TCCAGGTCATTTTCA-TTTCTTGACTCGTGATTTAAAC-CTAGTCGTAT
64 TGACTCATGATTTAATTTCA-ATCATTTTCATTTTC-TGACTCATGGTTTAATCTCGA-TCATTT
* * * * * * * **
11351873 TCATTTTCTAACTCGTGATTTAAT-CTCGATC-GTTTTCATTTTCTAACTCATGGTTT-ATC-CA
126 TTATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTG
* * * * * * ** * ** * **
11351934 AACATTTTT--TTTATTG----GTGGTCTAATCACAATTGTTTTC-ATTTCCTAACTTGT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* **** * * * * *
11351987 GGTTTAATACCAATCA-TTTTTATTTTTTGACTCATCG-TTTAATCTGAGTCATTTTCATTTTAT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGT-GATTTAATCTGGGTCATTTTCATTTTCT
* * * * * * **
11352050 GACTCATGATTTAA-TTCGGATCATTTTCATTTT-TGGAGTCATAGTTT-AGCTGGGGTTGTTTT
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCT-GACTCATGGTTTAATCT-CGATCATTTT
* * * *** * * ***
11352112 CATTTTTTGACTCATGGTTTAATCCCAAT--TGTTTTCATTTTTTGACTCGTGGA-TTAATCCCA
127 TATTTTCTGACTCATGATTTAATCCTGGTCAT-TTTTCATTTTCTGACTCAT--ATTTAATCTTG
* * * * *
11352174 ATCATTTTTCATTTTTTGAAT-AGTGGTTTAATCCCAATCATTTT-TATTTTTTAACTCAT
189 ATC-TTTTTCATTTTTTGACTCA-TGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
*** ** * * ** * ** ** *
11352233 GATTTAATTCCAAT-TGTTCTCATTTTTTGACTCACGGTTTAATCACGAACATTTTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
* * ** * ** * ** * * *
11352297 ACTCATGGTTTTATCCCAGTGGTTTTTCATTTTTTGACTCGCGGTTTAATCTTGCTCATTTTCAT
66 ACTCATGATTTAATTTCAAT-CATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* * * * *
11352362 TTTCTGACTCACGATTTAATTCAGGT--TGTTTTCATATTT-TGACTCATGGTTTAATCTTGGTC
130 TTTCTGACTCATGATTTAATCCTGGTCAT-TTTTCAT-TTTCTGACTCAT-ATTTAATCTTGATC
* * * * *
11352424 ATTTATCATTTTTCTGACTCATGATTTAATCAC--AATTGTT-TTTATTTCTTGACTCGT
192 -TTTTTCATTTTT-TGACTCATGGTTTAATCTCGTCATT-TTCTTT-TTT-TTGACTCAT
*** * * * * ** * *
11352481 GATTTAAACCTGATC-GTATTCATTTTTTTGACTCATGGCTTAATCTCGGT--TGTTTCATTTTT
1 GATTTAATTTTGATCACTTTTCA-TTTTATGACTCGTGATTTAATCTGGGTCAT-TTTCATTTTC
** * * *
11352543 TGACTCATGATTTAATTTTGATCGTTTTCATTTTTTGACTCATGGTTTAATTCTCG-TTATTTTT
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAA-TCTCGATCATTTTT
* * * * * * *
11352607 ATTTTTTGACTCGTGATTTTTAGT-TTGGTC-GTTTTCATTTTCTGACTCAAGATTTAAT-TTTA
128 ATTTTCTGACTCATGA--TTTAATCCTGGTCATTTTTCATTTTCTGACTC-ATATTTAATCTTGA
* ** *** * * ** *
11352669 GTCATTTTCATTTACTGACTCGCAGTTTAATCCTAGTCGTTTTC-AATTTTTGACTCGT
190 -TCTTTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCTTTTTTTTGACTCAT
** * * * *** * **
11352727 GATTTAATCCT-AGTCA-TTTT-TTTTCTTTGACAT-GTGATTTAATTTCAATTATTTTTGTTTT
1 GATTTAATTTTGA-TCACTTTTCATTT-TATGAC-TCGTGATTTAATCTGGGTCATTTTCATTTT
** * * * *
11352788 CTGACTCATGATTTAATTTTGATCATTTTCATTTTCTAATTCATGGTTTAATTTCGATAATTTTT
63 CTGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* * * * * *
11352853 AATTTT-TGAC-CTATTATTTAATCCCGATC-TTTTTC-TTTTCTTTGACTTATGATTTTATTTT
128 -ATTTTCTGACTC-ATGATTTAATCCTGGTCATTTTTCATTTTC--TGACTCAT-ATTTAATCTT
* * ** * **
11352914 GAT-TGTTTTCATTTTCTAACTCATTATTTAATCTTAGTCATTTT-GATTTTTTGACTCAT
188 GATCT-TTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* * * * * *
11352973 GGTTTAATCTTGATCA-TTTTCATTTTTTGACTTGTGATTTAAT-TCGAGTCATTTTTCTTTTTC
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCT-GGGTCA-TTTTCATTTTC
* * ** * * * *
11353036 T-AAT-AGGTGCTTTAATCCCGATCATTTTCATTTTCTGACAT-GTGGTTTAATCTAGGTCATTT
64 TGACTCA--TGATTTAATTTCAATCATTTTCATTTTCTGAC-TCATGGTTTAATCTCGATCATTT
* * *
11353098 TTATTTTTTGACTC--GCAGCTTAAT-CTAGGT--TGTTTTCATTTTCTGACTTATAGTTTAATC
126 TTATTTTCTGACTCATG-A-TTTAATCCT-GGTCAT-TTTTCATTTTCTGACTCATA-TTTAATC
* * * * * **
11353158 TTGATCATTTTCATTTTCTGACTCATGGTTTAATATCGACCATTTTC-ATTTTTTGACTTGT
186 TTGATCTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
** * * * * * * * ** *
11353219 GCCTTAATTCTGGT-AGTCTTCATTTTTTGACTTAG-GGTTTAATC-CAGTCATTTTTTATTTTC
1 GATTTAATTTTGATCACTTTTCATTTTATGAC-TCGTGATTTAATCTGGGTCA-TTTTCATTTTC
* * * * * * *
11353281 TAAC-CTACG-TTTAGTTTCAATCAATTTCATTTTCTAACTCATGATTTAAT-TCCAGTCATTTT
64 TGACTC-ATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTT
* * * ** *
11353343 CATTTTTTGACTGGCA--ATTTAATCCCT-GTCA-TTTTCATTTTTTGACTTGTAGTTTAATCTC
127 TATTTTCTGACT--CATGATTTAAT-CCTGGTCATTTTTCATTTTCTGACTCATA-TTTAATCTT
* * ** *
11353404 GATCATTTTTCATTTTCTGACTCATTGTTTAATTCTAATCATTTTC-ATTTTTTGACTCAT
188 GATC-TTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTGACTCAT
* * * ** * * * * ***
11353464 GATTTAATCTAGGT-TGTTTTCATTTTCTGACTGGTGGTTTAAAC-CAATCATTTT--TTTTCTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
** * * * * * * *
11353525 ACTGGTGGTTTAATCTT-AGTCATTTTCATTTTCTAACTAATGGTTTAATC-CTGGTTATTTTCA
66 ACTCATGATTTAAT-TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTTTA
* * ** * * * * * *
11353588 TTTTTTGACTCATGTTTTAAT-CTCAATCA-TTGTCATTTTTTGAGTCTTGGTTTAATCCT-ATC
129 TTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATC
* * * **
11353650 GTTTTTCATTTTCTGACTCAT-G----AT-T-GATCATCTTC-ATTTTTTGACTTGT
192 -TTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
**** * * * * * *** *
11353699 GATTTAA-ACCCAGTC-GTATTCATTTTTTGACTTGTGGTTTAATCTCAATCATTTTCATTTTTT
1 GATTTAATTTTGA-TCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
* ** * * **
11353762 GACTTAT-AGTTTAATCCCAATCATTTTCATTTT-TGGACTCGTGGTTTAACTCTTG-TTGTTTT
65 GACTCATGA-TTTAATTTCAATCATTTTCATTTTCT-GACTCATGGTTTAA-TCTCGATCATTTT
* * * * * ***
11353824 CATTCTCTGACTCGTAACTTAATTCC-AACCA-TTTTCATTTTCTGACTCATGATTTAATCCTT-
127 TATTTTCTGACTCATGATTTAA-TCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAAT-CTTG
* * ** * ** * **
11353886 ATCGTTTTCATTTTCTGACTTGTGATTTAAT-TCCAAACATTTTC-ATTTTTTGACTTGT
189 ATCTTTTTCATTTTTTGACTCATGGTTTAATCT-C-GTCATTTTCTTTTTTTTGACTCAT
* * * * * * * * * **** * *
11353944 GGTTTAGTCTTGGTCATTTTTTATTTTTTGACCCATGATTTAATCCCTAT-AGTTTTAATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCA-TTTTCATTTTCT
** ** * * * **
11354008 GACTTGTGATTTAATTAT-GGTCATTTTGACTTTT-TGACTCATTGTTTAATCTCGATCGTTTAC
65 GACTCATGATTTAATT-TCAATCATTTTCA-TTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* ** * * * ** * *
11354071 ATTTTTTGACTGGTGGTTTAAT-ATAGGTCATTTTTCATTTCCTGACTTGTGGTTTAATCTCGAT
128 ATTTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGAT
* * * ** *
11354135 -TATTTTCATTTTTTGACTCGTGATTTAATCTCAATCATTTTCCATTTTTTGAATCAT
191 CT-TTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* ** * * * * * * * *
11354192 GATTTTATCCCTG-TCA-TTTTTAGTTTT-T-AATGGTGATTTAATTTTGATCTTTTTTATTTTT
1 GATTTAAT-TTTGATCACTTTTCA-TTTTATGACTCGTGATTTAATCTGGGTCATTTTCA-TTTT
* * * * ** * * * * * * * *
11354253 TTTACTCGTGGTTTAATTTCGCTCATTTTTCACTTACTAACTCGTGATCTAATTTCGATCGTTTT
63 CTGACTCATGATTTAATTTCAATCA-TTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* *** * * * * * * *
11354318 CATTTTCTGACTTGCGATTTTAT-CTAG--ATTGTTTTCATTTTCTAAATCATGGTTTAATCCTA
127 TATTTTCTGACTCATGATTTAATCCTGGTCA-T-TTTTCATTTTCTGACTCAT-ATTTAATCTTG
* ** * * * * *
11354380 ATCATTTTTTATTTTTTGACTCACAGTTTCATCTTGGTCATTTTC-ATTTTCTGGCTCAT
189 ATC-TTTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
** * * * * ** * * *
11354439 GGA-TTAATTCGGATCA-TTTTCATTTT-TGAGTCATGGTTTAATCTCGGTTGTTCTCTTTTTTT
1 -GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
** * * ** * *
11354501 GACTTGTGGTTTAATCCTT--ATCGTTATTTTTTTTCTGACTCAT-GTTTCAATCTTGGTCATTT
65 GACTCATGATTTAAT--TTCAATCATT-TTCATTTTCTGACTCATGGTTT-AATCTCGATCATTT
* * * * * * * *
11354563 TCA-TTTCTTGACTCATTATTTAA-ACTCAGTCA-TATTCATTTTTTGACTCGTGATTTAATTTT
126 TTATTTTC-TGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT
* * * * * * *
11354625 GATCATTTTCATTTTTTGACTCATGGTTTAATTCTCATCGTTTTC-ATTCTCTGACTTAT
188 GATCTTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTGACTCAT
* * * * * * * *
11354684 GATTTAATTTTGGT-AATTTTCATTTTCTAACTCATGATTTAATTTTGAT-ATTTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCA-TTTTCATTTTCT
* ** * * * * * *
11354747 GACTCATGATTTAATCTCGGTCATTTTCATTTTTTGACTCGTGTTTTAATTTAGATCATTTTCAT
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT
* * * * * * * *** *
11354812 TTTCTAACTCATGGTTTAAT-CTCGATCGTTTTT-ATTTTTTGATTGATGATTTAATCCCAATCA
130 TTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATCT
* * *
11354875 TTTTC-TTTTCTCTAACTCATGATTTAAT-TCTGAGCATTTT-TATTTTTTTGACTCAT
193 TTTTCATTTT-T-TGACTCATGGTTTAATCTC-G-TCATTTTCT-TTTTTTTGACTCAT
* *** * ** * * * * * * * ** *
11354931 GGTTTAATCCCGGT-TGTTTTGATTTTTTAACTTGTGCTTTAATCTCGATTGTTTTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
** * ** * * * * * * *
11354995 ACTTGTGGTTTAATCCCAATCATTTTTATTTTTTAACTTATGGTTTAATCCCAAT-ATTTTCATA
66 ACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTAT-
* * * * * *
11355059 TTT-TGACTCATGGTTTAAT-CTAGGTCATTTTTCTTTTTTTGA-TTATTGGTTTAATC-TCAGT
130 TTTCTGACTCATGATTTAATCCT-GGTCATTTTTCATTTTCTGACTCA-T-ATTTAATCTTGA-T
* * ** *
11355120 CATTTTT-ATTTTTTGATTTATGGTTTAATC-CAAGTTGTTTTC-ATTTTTTGACTCAT
191 C-TTTTTCATTTTTTGACTCATGGTTTAATCTC--GTCATTTTCTTTTTTTTGACTCAT
* * * * * * * * *
11355176 GGTTTAATCTAGGTCGC-TTTCATTTTTTGACTCGTGGA-TTAATCTCGGTCGTTTTCATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGT-GATTTAATCTGGGTCATTTTCATTTTCT
* ** * ** * * **
11355239 GACT--TGTAGTTTGATCCCTATTGTTTTTCTTTTTCTAACTGGTGGTTTAATC-C-ATGTCATT
65 GACTCATG-A-TTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA--TCATT
* * ** * * *
11355300 TTCATTTTCTGACTCATGGGTTTAATCCCAGTCATTTTTCATTTTCTAACCCA-AGTTTTAATCC
125 TTTATTTTCTGACTCAT-GATTTAATCCTGGTCATTTTTCATTTTCTGACTCATA--TTTAATCT
* * * * *
11355364 T-AGTCATTTTCATTTTTTGACTCATGATTTAAT-TCTGATCTTTTTC-ATTTTTTGACTTAT
187 TGA-TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-G-TCATTTTCTTTTTTTTGACTCAT
** ** * * * *
11355424 GGCTTAATCCT-ATCA-TTTTCATTTTCTAACTC-TCGATTTAATCTTGGTCATTTTTAATTTTC
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGT-GATTTAATCTGGGTCA-TTTTCATTTTC
* ** * * * * *
11355486 TGGCT--TGCAGTTTAATCCCGATCGTTTTCATTTTCTGACTCATGATTTAATCTAGGTCATTTT
64 TGACTCATG-A-TTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* * * * * *** * ** * ** *
11355549 CATTTTTTGA--CGTGGTTTAACCCCAATCA-TTTT--TTTTCTAACTGGTGGTTTAATCCCGGT
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGAT
* * * * *
11355609 CATTTTCATTTTTTGACTCTTGGTTTAATC-C--CAATTTTTTTCATTTTTTAACTCGT
191 CTTTTTCATTTTTTGACTCATGGTTTAATCTCGTC-ATTTTCTT--TTTTTTGACTCAT
*** * * * * * * *
11355665 GATTTAAACCTAATC-GTTTTCATTTCT-TGACTCATGATTTAAACCT-GATCGTATTCATTTTC
1 GATTTAATTTTGATCACTTTTCATTT-TATGACTCGTGATTT-AATCTGGGTCATTTTCATTTTC
* * * * * * ** * * * ** *
11355727 TAACCCATGGTTTAATCTT-GATCGTTTTCATTTTTTGACTTGTGATTTAATTTTGATTGTTTTC
64 TGACTCATGATTTAAT-TTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* * * *
11355791 ATTTTTTGACT-AGTGGTTTAAT--TGCAGTCA-TTTTCATTTTTTGACTCATGGTTTAATTCTT
128 ATTTTCTGACTCA-TGATTTAATCCTG--GTCATTTTTCATTTTCTGACTCAT-ATTTAA-TCTT
* * * * * * * *
11355852 G-TCCTTTTCATTCTCTGACTCATGATTTAATTTTGGTCATTTT-TATTTTTTGAAC-CGT
188 GATCTTTTTCATTTTTTGACTCATGGTTTAA-TCTCGTCATTTTCTTTTTTTTG-ACTCAT
* * * * * **** * *
11355910 GATTTAATCTCT-ATCA-TTTTTATTTTCTAACTTGTGATTTAATTCCAAAT-GTTTTCATTTTT
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGATTTAA-TCTGGGTCATTTTCATTTTC
* * * * ** * * * * * ** *
11355972 TCACTCGTGGTTTAATCTCGGTCGTTTTCATTTTTTGACCCATGATTTAATCCCTG-TCGCTTTC
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTC-GATCATTTTT
* ** * * * ** ** *
11356036 ATGTTT-TGACTCATGATTTAATTCTAATC-GTTTTCATTTTTTGACTCGTGGCTTAATCGAGGT
128 AT-TTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGAT
* * * * *
11356099 CGTTTTCATTTTCTGACTCATGGTTTAATCCTAGTTATTTT-TCTTTTTTTGACTAAT
191 CTTTTTCATTTTTTGACTCATGGTTTAAT-CTCGTCATTTTCT-TTTTTTTGACTCAT
* * * * * * * **
11356156 -AGTTTAATCTCGGTTAC-TTTCATTTTCTGACTAGTGGTTTAATCCT-AATCATTTTTCATTTT
1 GA-TTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCA-TTTTCATTTT
* ** * **
11356218 TTGACTCATGATTTAATCCCAATCATTTTTC-TTTTCTAACTCGA-GGTTTAATCTCGATTGTTT
63 CTGACTCATGATTTAATTTCAATCA-TTTTCATTTTCTGACTC-ATGGTTTAATCTCGATCATTT
* * * * * * *
11356281 TTCATTTTTTGAATCAT-AATTAATCCCGATC-GTTTTCATTTTCTGACTCATGGTTTAAT-TTC
126 TT-ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT-
* * * * * * *
11356343 GATCATTTTTCATTTTTTGACACATGAGTTAAACCTGGTCGTTTTC-ATTTCTTGACTCAT
188 GATC-TTTTTCATTTTTTGACTCATG-GTTTAATCTCGTCATTTTCTTTTTTTTGACTCAT
**** * * * * *** * * *
11356403 GATTTAAACCCGATC-GTATTCATTTTTTGACTCGTGGTTTAATGC-CAATCGTTTACATTTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTCT
** * ** * * * * * *
11356466 GACTTGTGATTTAATTTCGATTGTTTTCATTTTTTGGCACGTGGTTCAATC-CCAGTCATTTTTA
65 GACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTTA
* * * * * * ** *
11356530 TTTTTTGACTCATGGTTTAATTCTCGTC-GTTTTCATTCTCT-AGCTTGTGATTTAATTCTAG-T
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGA-CTCAT-ATTTAA-TCTTGAT
* * ** * * * * *** * **
11356592 CATTTTTTATTTTCTGACTTGTGATTTAATCTTGGCCAATTTC-ACATCTTGACTTGT
191 C-TTTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* **** * * * * * *
11356649 GAATTAAACCCGATC-GTATTCATTTTTTGACTCAT-AGTTTAATCCT-GGTCATTTTTATTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGA-TTTAAT-CTGGGTCATTTTCATTTTC
* * ** * ** * * * *
11356711 TGACTCATGGTTTAATCTCGGTCATTTTCATTTTTTGACTTGTGATTTAATTTGGATCATTTTCA
64 TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTA
* * * ** ** * * *
11356776 TTTTTTGACTCGTGGTTTAATTTTCATCA-TTTTCATTCTCTGACTTATGATTTAATTCTAG-TC
129 TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAA-TCTTGATC
* * * * * * * * * *
11356839 ATTTTCATTTTTTGAGTCGTGATTTTATTTTGGTCATTTTC-ATTTTCTGAGTCAT
192 TTTTTCATTTTTTGACTCATG-GTTTAATCTCGTCATTTTCTTTTTTTTGACTCAT
* * ** ** * * * * * * *
11356894 GGTTTGATCCTGGCCA-TTTTTATTTTTTAAC-CAATGATTTAATCTCGATCATTTT-TTTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTC-GTGATTTAATCTGGGTCATTTTCATTTTC-
** ** * * ** * * ** * *
11356956 TTGACTTGTGATTTAATTTTGATCATGTTCATTTTCTAACTTGTGGCTTAAACAAGATCGTTTTC
64 -TGACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTT
* * * ** * * * * * *
11357021 ATTTTTTTACTTATGATTTAATTTTGATCA-TTTTCATTTTGTGACCCATGACTTAATCCTAAT-
128 ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGATC
* * * * *
11357084 TTTTTC----TCTGACTTATGGTTTAAT-TCTGATCATTTTC-ATTTTCTAACTCAT
192 TTTTTCATTTTTTGACTCATGGTTTAATCTC-G-TCATTTTCTTTTTTTTGACTCAT
* * * * * * ***
11357135 GGTTTAATTGTGGTCA-TTTTCATTTTTTGACTCATAGA-TTAATTTCAATCATTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGT-GATTTAATCTGGGTCATTTTCATTTTCT
* * * * ** * ** * * *
11357198 GTCTTATGGTTTTAGTCCCAGTTGTTTTCATTTTCTAACTTATGGTTTAATCT-TAGTCATTTTT
65 GACTCAT-GATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTTT
* ** * * * * * * * * **
11357262 CTTTTTCTGACTGGT-AGTTTAATACTAGT-AGTTGTCATTTTTTGATTCGTGGTTTAATC-CAA
128 -ATTTTCTGACTCATGA-TTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* * *
11357324 GTCATTTTCATTTTCTT-ACTCATGGTTTAATCTTGGTCATTTTC-ATTTTTTGA--C-T
190 -TCTTTTTCATTTT-TTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* *
11357379 -A-TT-AGTTT-A--A----TC-----ATGA-TCGTGGTTTAATC-GAGGTCATTTTCATTTTCT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTG-GGTCATTTTCATTTTCT
* * * * *
11357427 TACTCATTG-TTTAA-TCCTAGTCATTTTCATTTTTTGACT-ACTAGTTTAATC-CTGATCATTT
65 GACTCA-TGATTTAATTTC-AATCATTTTCATTTTCTGACTCA-TGGTTTAATCTC-GATCATTT
* ** * * * * *
11357488 TTCATTTTTTGACTTGTGATTTAAACCTGATCATTTTT-A-TTTCTTGACTCATGCTTTAAACCT
126 TT-ATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTC-TGACTCAT-ATTTAATCTT
* * * * ** * * *
11357551 GGTCATATTCATTTTCTGACTCATGGTTTAATCTTTATCATTTTC-ATTTTCTGAC-CTT
188 GATCTTTTTCATTTTTTGACTCATGGTTTAATC-TCGTCATTTTCTTTTTTTTGACTCAT
* * * * * * ** ** *
11357609 GAATTAATTTTAATCA-TTTTGATATTT-TGACCCATGGTTTAATCCT-AATTGTTTTCATTTTT
1 GATTTAATTTTGATCACTTTTCAT-TTTATGACTCGTGATTTAAT-CTGGGTCATTTTCATTTTC
* * * * * * *
11357671 TGAC-CTATGGTTTAATTCCTATCATTTTCTTTTTTTGACTCATGATTTAAT-TCTAGTCATTTT
64 TGACTC-ATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGA-TCATTTT
* ** * * *
11357734 CATTTTCTGACTCATGATTTAATCCTCATC-CTTTTCATTTTCTTACTCATGATTTAAT-TTCAA
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTT-GA
* * * * * *
11357797 TCGTTTTCATTTTTTGACGCGTGGTTTAATCTCGGTCGTTTTC-ATTTTTTGAC-CTGT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTC-AT
* * * **** * * * *
11357854 GATTTAATCCTTG-TCA-TTTTTATTTTTTGACTTACAATTTAATTTTGGTCGTTTTCATTTTTT
1 GATTTAAT-TTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCT
** * * ** ** * ** ***
11357917 GACTGGTGGTTTAA-TCCTGGTTGTTTTCATTTTTTGACTGGTGGTGCCAT-TCCGATC-TTTTT
65 GACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCT-CGATCATTTTT
* * * * * * * *
11357979 CACTTTT-TGACTCGTG-TTTAGTCCTGATC-GTTTTCATTTTTTGACTCGTGGTTTAATCCTGA
128 -A-TTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCAT-ATTTAATCTTGA
* * * * * * * **
11358041 TCGTTTTTTATTTTTTAAATCATGGTTTAATCCCAGTTATTTTC-ATTTTCTGACTTGT
190 TC-TTTTTCATTTTTTGACTCATGGTTTAATCTC-GTCATTTTCTTTTTTTTGACTCAT
* * ** * **
11358099 AATTTAATTTTGATCA-TTTTCATTTTTTGACTTATGGTTTAATTCT-AATCATTTTTCACTTTT
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAA-TCTGGGTCA-TTTTCA-TTTT
* * * * * * *
11358162 -TGACTCATGATTTAA-TTCTAGTAATTTTTATTTTTTGACTCATTGTTTAATTTCAATCATTTT
63 CTGACTCATGATTTAATTTC-AATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTT
* * * * * * * * * **
11358225 CATTTTTTCACTAATGGTTTAATCCTGGTCGTTTTTCATTTTTTAACTTA-AGTTTAATC-CCAG
127 TATTTTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCATA-TTTAATCTTGA-
* * * ** * * * *
11358288 TCATTTTCATTGTCTG-CTTTTAGTTTAATCTCGATCGTTTT-TATTTTTTGAGTCAT
190 TCTTTTTCATTTTTTGACTCATGGTTTAATCTCG-TCATTTTCTTTTTTTTGACTCAT
* * * * * * * * *
11358344 GATTTAATCTTGAT-AATTTTCATTTTCTGACTCATGAATTATTTTTGGTCATTTTCATTTTTTG
1 GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
*
11358408 ACTCATGGTTTA
66 ACTCATGATTTA
11358420 TGTTTGCTTA
Statistics
Matches: 22766, Mismatches: 5696, Indels: 4038
0.70 0.18 0.12
Matches are distributed among these distances:
224 1 0.00
225 2 0.00
226 17 0.00
227 50 0.00
228 129 0.01
229 70 0.00
230 53 0.00
231 70 0.00
232 36 0.00
233 55 0.00
234 15 0.00
235 76 0.00
236 98 0.00
237 216 0.01
238 416 0.02
239 182 0.01
240 588 0.03
241 598 0.03
242 900 0.04
243 1283 0.06
244 2388 0.10
245 4157 0.18
246 4601 0.20
247 3499 0.15
248 1559 0.07
249 499 0.02
250 186 0.01
251 90 0.00
252 53 0.00
253 134 0.01
254 9 0.00
255 3 0.00
256 3 0.00
257 37 0.00
258 118 0.01
259 30 0.00
260 5 0.00
261 6 0.00
262 121 0.01
263 206 0.01
264 23 0.00
265 82 0.00
266 80 0.00
267 22 0.00
ACGTcount: A:0.20, C:0.16, G:0.12, T:0.52
Consensus pattern (246 bp):
GATTTAATTTTGATCACTTTTCATTTTATGACTCGTGATTTAATCTGGGTCATTTTCATTTTCTG
ACTCATGATTTAATTTCAATCATTTTCATTTTCTGACTCATGGTTTAATCTCGATCATTTTTATT
TTCTGACTCATGATTTAATCCTGGTCATTTTTCATTTTCTGACTCATATTTAATCTTGATCTTTT
TCATTTTTTGACTCATGGTTTAATCTCGTCATTTTCTTTTTTTTGACTCAT
Found at i:11348096 original size:137 final size:137
Alignment explanation
Indices: 11347906--11348156 Score: 308
Period size: 137 Copynumber: 1.8 Consensus size: 137
11347896 TTTAGTTCTA
*
11347906 ATCATTTTCATTCTCTGACTTGTGATTTAATCTAGATAGTTTTCATTTCTTGACTCGTGATTTAA
1 ATCATTTTCATTCTCTGACTTGTGATTTAATCTAGATAGTTTTCATTTCTTGACTCATGATTTAA
* * **
11347971 ACCCGGTCGTATTCATTTTTTGACTAATGGCTTAATCTTGATCATTTTTTTCTGACTTGTGGTTT
66 ACCCGATCGTATTCATTTTTTGACTAATGACTTAATCCCGATCATTTTTTTCTGACTTGTGGTTT
11348036 AATCTGG
131 AATCTGG
* * * * * * * *
11348043 ATCATTTTCATTTTTTGACTTGTGGTTTAATTTGGGTCA-TTTTTATCTT-TTGACTCATGGTTT
1 ATCATTTTCATTCTCTGACTTGTGATTTAATCTAGAT-AGTTTTCAT-TTCTTGACTCATGATTT
* * * * *
11348106 AATCTCGATCGTTTTCATTTTTTGACTCATGATTTAATCCCGATCATTTTT
64 AAACCCGATCGTATTCATTTTTTGACTAATGACTTAATCCCGATCATTTTT
11348157 CATTTTCTCA
Statistics
Matches: 94, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
137 91 0.97
138 3 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.51
Consensus pattern (137 bp):
ATCATTTTCATTCTCTGACTTGTGATTTAATCTAGATAGTTTTCATTTCTTGACTCATGATTTAA
ACCCGATCGTATTCATTTTTTGACTAATGACTTAATCCCGATCATTTTTTTCTGACTTGTGGTTT
AATCTGG
Found at i:11348550 original size:37 final size:36
Alignment explanation
Indices: 11348449--11348588 Score: 135
Period size: 34 Copynumber: 3.9 Consensus size: 36
11348439 TCATTTTTTG
* * ** * *
11348449 ACTCGTGGTTTAATCTTGGTCATTTT-TATTTT-TG
1 ACTCGTGGTTTAATCCTAGTTGTTTTATTTTTTCTA
* * *
11348483 ACTCGAGGTTTAATCCTA-TCGTTTT-CTTTTTCTA
1 ACTCGTGGTTTAATCCTAGTTGTTTTATTTTTTCTA
11348517 ACTCGTGGTTTAATCCTAGTTGTTATTATTTTTTCTA
1 ACTCGTGGTTTAATCCTAGTTGTT-TTATTTTTTCTA
*
11348554 ACTTGTGGTTTAATCCTAGTTGTTTTTCATTTTTT
1 ACTCGTGGTTTAATCCTAGTTG-TTTT-ATTTTTT
11348589 GACTCTTGAT
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
33 10 0.11
34 33 0.37
35 4 0.04
36 2 0.02
37 31 0.35
38 9 0.10
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.55
Consensus pattern (36 bp):
ACTCGTGGTTTAATCCTAGTTGTTTTATTTTTTCTA
Found at i:11349567 original size:69 final size:69
Alignment explanation
Indices: 11349483--11349887 Score: 291
Period size: 69 Copynumber: 5.8 Consensus size: 69
11349473 TTGTTTTTAG
* * ** * * *
11349483 TTTTTGAC-TAGTGGTTTAATCCCTATCGTTTTCATTTTTTGACTCGCGATTTAGTTCTGATCAT
1 TTTTTGACTTA-TGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCAT
11349547 TTTCA
65 TTTCA
* * * * *
11349552 TTTTTGACTTATGGTTTAATCTGGGTTGTTTTTC-TTTTTCTGACTCGTGGTTTAATCCTGATCG
1 TTTTTGACTTATGGTTTAATCTCGATCG-TTTTCATTTTT-TGACTCATGGTTTAATCCTGATCA
*
11349616 TTATTCT
64 TT-TTCA
* ** * * * *
11349623 TTTTCTAACTCCTAGTTCAATC-CTAGTCATTTTCATTTTTTGACTCATGGTTTAATCCTGATCA
1 TTTT-TGACTTATGGTTTAATCTCGA-TCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCA
11349687 TTTTTCA
64 -TTTTCA
** * * * * *
11349694 TTTTTTGACCAATGATTTAATCTCGATCGTTTTCATTTCTTGACTCATGATTTAAACCCT-ATCG
1 -TTTTTGACTTATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTT-AATCCTGATCA
*
11349758 TATTCA
64 TTTTCA
* * * * * * *
11349764 TTTCTAACTTGTGGTTTAATCTCGATCATTTTCATTTTCTAACTCCTGGTTT-ATCCT-AGTCAT
1 TTTTTGACTTATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGA-TCAT
11349827 TTTCA
65 TTTCA
* * * * * **
11349832 TTTTCTGACTCATGATTTAATTTCTATCGTTTTCATTTTTTTACTTGTGGTTTAAT
1 TTTT-TGACTTATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAAT
11349888 TCTTGTCGTT
Statistics
Matches: 257, Mismatches: 65, Indels: 27
0.74 0.19 0.08
Matches are distributed among these distances:
67 5 0.02
68 10 0.04
69 102 0.40
70 35 0.14
71 74 0.29
72 31 0.12
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.51
Consensus pattern (69 bp):
TTTTTGACTTATGGTTTAATCTCGATCGTTTTCATTTTTTGACTCATGGTTTAATCCTGATCATT
TTCA
Found at i:11350905 original size:102 final size:103
Alignment explanation
Indices: 11350714--11350971 Score: 254
Period size: 102 Copynumber: 2.5 Consensus size: 103
11350704 TTTAATCTTT
* * * * * * * **
11350714 GTCATTTTTATTTTCTAACTTATGATTTAATCCC-AGTCATTTTTAATTTTTTGACTCATGGTTT
1 GTCATTTTCATTGTCTAACTCATGGTTTAATCCCGA-TCCTTTTT-CTTTTTT-ACTTACAGTTT
* * *
11350778 AATCCTGATCTTTTCATTTTTTGACTCGTGATTTAATCTGGA
63 AATCCCGATCTTTTCAGTTTTTGACTCATGATTTAAT-TGGA
* * * **
11350820 -TCATTTTCATTTTTTGACTTGTGGTTTAATCCCGAT-CTTTTT-TTTTTTACTTACAGTTTAAT
1 GTCATTTTCATTGTCTAACTCATGGTTTAATCCCGATCCTTTTTCTTTTTTACTTACAGTTTAAT
* *
11350882 CCCGATCATTTTTAGTTTTTGACTCATGATTTAATTTGA
66 CCCGATC-TTTTCAGTTTTTGACTCATGATTTAATTGGA
**
11350921 GTTGTTTTCATTGTCTAACTCATGGTTTAATCCCGATCCTTTTTCTTTTTT
1 GTCATTTTCATTGTCTAACTCATGGTTTAATCCCGATCCTTTTTCTTTTTT
11350972 GACTGGTGGT
Statistics
Matches: 126, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
101 20 0.16
102 59 0.47
103 6 0.05
104 11 0.09
105 29 0.23
106 1 0.01
ACGTcount: A:0.19, C:0.16, G:0.11, T:0.53
Consensus pattern (103 bp):
GTCATTTTCATTGTCTAACTCATGGTTTAATCCCGATCCTTTTTCTTTTTTACTTACAGTTTAAT
CCCGATCTTTTCAGTTTTTGACTCATGATTTAATTGGA
Found at i:11350950 original size:137 final size:137
Alignment explanation
Indices: 11350739--11350985 Score: 313
Period size: 137 Copynumber: 1.8 Consensus size: 137
11350729 TAACTTATGA
* * * * *
11350739 TTTAATCCCAGTCATTTTTAATTTTTTGACTCATGGTTTAATCCTGATCTTTTCATTTTTTGACT
1 TTTAATCCCAGTCATTTTTAAGTTTTTGACTCATGATTTAATCCTGATCTTTTCATTGTCTAACT
* ** *
11350804 CGTGATTTAATCTGGAT-CATTTTCATTTTTTGACTTGTGGTTTAATCCCGATCTTTTTTTTTTT
66 CATGATTTAATCCCGATCCATTTTC-TTTTTTGACTGGTGGTTTAATCCCGATCTTTTTTTTTTT
11350868 ACTTACAG
130 ACTTACAG
* *
11350876 TTTAATCCC-GATCATTTTT-AGTTTTTGACTCATGATTTAAT-TTGAGTTGTTTTCATTGTCTA
1 TTTAATCCCAG-TCATTTTTAAGTTTTTGACTCATGATTTAATCCTGA--TCTTTTCATTGTCTA
* *
11350938 ACTCATGGTTTAATCCCGATCCTTTTTCTTTTTTGACTGGTGGTTTAA
63 ACTCATGATTTAATCCCGATCCATTTTCTTTTTTGACTGGTGGTTTAA
11350986 ACTCGATCAT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
135 3 0.03
136 21 0.23
137 63 0.68
138 6 0.06
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (137 bp):
TTTAATCCCAGTCATTTTTAAGTTTTTGACTCATGATTTAATCCTGATCTTTTCATTGTCTAACT
CATGATTTAATCCCGATCCATTTTCTTTTTTGACTGGTGGTTTAATCCCGATCTTTTTTTTTTTA
CTTACAG
Found at i:11353365 original size:139 final size:139
Alignment explanation
Indices: 11353130--11353630 Score: 354
Period size: 139 Copynumber: 3.6 Consensus size: 139
11353120 ATCTAGGTTG
* * * * *
11353130 TTTTCATTTTCTGACTTATAGTTTAA-TCTTGATCATTTTCATTTTCTGACTCATGGTTTAATAT
1 TTTTCATTTTCTAACTCATCGTTTAATTC-TAATCATTTTCATTTTCTGACTCATGATTTAAT-T
* * * *
11353194 CGA-CCATTTTCATTTTTTGACTTGTGCCTTAAT-TCTGGT-AGTCTTCATTTTTTGACTTAG-G
64 CCAGTCATTTTCATTTTTTGAC-TG-GCCTTAATCCCT-GTCA-TCTTCATTTTTTGACTT-GTA
11353255 GTTTAATC-C-AGTCAT
124 GTTTAATCTCGA-TCAT
* * * *
11353270 TTTTTATTTTCTAAC-C-TACGTTTAGTT-TCAATCAATTTCATTTTCTAACTCATGATTTAATT
1 TTTTCATTTTCTAACTCAT-CGTTTAATTCT-AATCATTTTCATTTTCTGACTCATGATTTAATT
* *
11353332 CCAGTCATTTTCATTTTTTGACTGGCAATTTAATCCCTGTCATTTTCATTTTTTGACTTGTAGTT
64 CCAGTCATTTTCATTTTTTGACTGGC--CTTAATCCCTGTCATCTTCATTTTTTGACTTGTAGTT
11353397 TAATCTCGATCAT
127 TAATCTCGATCAT
* * * *
11353410 TTTTCATTTTCTGACTCATTGTTTAATTCTAATCATTTTCATTTTTTGACTCATGATTTAA-TCT
1 TTTTCATTTTCTAACTCATCGTTTAATTCTAATCATTTTCATTTTCTGACTCATGATTTAATTCC
** * ** * ** * *
11353474 AGGTTGTTTTCATTTTCTGACTGGTGGTTTAA-ACCAATCAT-TT--TTTTTCTGACTGGTGGTT
66 A-GTCATTTTCATTTTTTGACT-G-GCCTTAATCCCTGTCATCTTCATTTTT-TGACTTGTAGTT
*
11353535 TAATCT-TAGTCA-
127 TAATCTCGA-TCAT
* * * ** * * *
11353547 TTTTCATTTTCTAACTAATGGTTTAATCCTGGTTATTTTCATTTTTTGACTCATGTTTTAA-TCT
1 TTTTCATTTTCTAACTCATCGTTTAATTCTAATCATTTTCATTTTCTGACTCATGATTTAATTC-
* *
11353611 CAATCATTGTCATTTTTTGA
65 CAGTCATTTTCATTTTTTGA
11353631 GTCTTGGTTT
Statistics
Matches: 294, Mismatches: 47, Indels: 43
0.77 0.12 0.11
Matches are distributed among these distances:
137 76 0.26
138 28 0.10
139 83 0.28
140 44 0.15
141 59 0.20
142 3 0.01
143 1 0.00
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.52
Consensus pattern (139 bp):
TTTTCATTTTCTAACTCATCGTTTAATTCTAATCATTTTCATTTTCTGACTCATGATTTAATTCC
AGTCATTTTCATTTTTTGACTGGCCTTAATCCCTGTCATCTTCATTTTTTGACTTGTAGTTTAAT
CTCGATCAT
Found at i:11353591 original size:102 final size:105
Alignment explanation
Indices: 11353297--11353674 Score: 295
Period size: 106 Copynumber: 3.6 Consensus size: 105
11353287 ACGTTTAGTT
* * * * * * * * ****
11353297 TCAATCAATTTCATTTTCTAACTCATGATTTAATTCCAGTCATTTTCATTTTTTGACTGGCAATT
1 TCAATCATTTTTATTTTCTGACTCATGGTTTAATTCTAATCATTTTCATTTTCTAACTAATGATT
* * *
11353362 TAATCCCT-GTCATTTTCATTTTTTGACTTGTAGTTTAATC
66 TAAT-CCTGGTTATTTTCATTTTTTGACTGGTAGTTTAAAC
* * * * *
11353402 TCGATCATTTTTCATTTTCTGACTCATTGTTTAATTCTAATCATTTTCATTTTTTGACTCATGAT
1 TCAATCATTTTT-ATTTTCTGACTCATGGTTTAATTCTAATCATTTTCATTTTCTAACTAATGAT
* * *
11353467 TTAAT-CTAGGTTGTTTTCATTTTCTGACTGGTGGTTTAAAC
65 TTAATCCT-GGTTATTTTCATTTTTTGACTGGTAGTTTAAAC
** * *
11353508 -CAATCA-TTTT-TTTTCTGACTGGTGGTTTAA-TCTTAGTCATTTTCATTTTCTAACTAATGGT
1 TCAATCATTTTTATTTTCTGACTCATGGTTTAATTC-TAATCATTTTCATTTTCTAACTAATGAT
** *
11353569 TTAATCCTGGTTATTTTCATTTTTTGACTCAT-GTTTTAATC
65 TTAATCCTGGTTATTTTCATTTTTTGACTGGTAG-TTTAAAC
* * * * * * * * *
11353610 TCAATCATTGTCATTTTTTGAGTCTTGGTTTAATCCT-ATCGTTTTTCATTTTCTGACTCATGAT
1 TCAATCATTTTTATTTTCTGACTCATGGTTTAATTCTAATC-ATTTTCATTTTCTAACTAATGAT
11353674 T
65 T
11353675 GATCATCTTC
Statistics
Matches: 218, Mismatches: 44, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
101 3 0.01
102 71 0.33
103 8 0.04
104 10 0.05
105 51 0.23
106 75 0.34
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.52
Consensus pattern (105 bp):
TCAATCATTTTTATTTTCTGACTCATGGTTTAATTCTAATCATTTTCATTTTCTAACTAATGATT
TAATCCTGGTTATTTTCATTTTTTGACTGGTAGTTTAAAC
Done.