Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19587844
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 68000 characters in sequence are not A, C, G, or T
File 89 of 105
Found at i:15700038 original size:2 final size:2
Alignment explanation
Indices: 15700019--15700071 Score: 70
Period size: 2 Copynumber: 26.5 Consensus size: 2
15700009 TAACTTTATC
* * * *
15700019 TA TA TC TA TA TC TA TA TA TA TA TA TA TG TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15700061 TA TA TA TA TA T
1 TA TA TA TA TA T
15700072 CATCAAAAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:15700813 original size:17 final size:17
Alignment explanation
Indices: 15700783--15700823 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
15700773 TAATAAAATT
*
15700783 AATAAAT-T-TATTATC
1 AATAAATATATATTATA
*
15700798 AATTAATATATATTATA
1 AATAAATATATATTATA
15700815 AATAAATAT
1 AATAAATAT
15700824 CCTTAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 6 0.29
16 1 0.05
17 14 0.67
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAAATATATATTATA
Found at i:15707869 original size:2 final size:2
Alignment explanation
Indices: 15707862--15707887 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
15707852 ATCGCTTATC
15707862 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
15707888 AAGGTCTACG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15714976 original size:62 final size:62
Alignment explanation
Indices: 15714879--15714995 Score: 207
Period size: 62 Copynumber: 1.9 Consensus size: 62
15714869 CTCTTTTCTC
*
15714879 ATTTAATGTCATCAGACCGATGAAATAGAATAAACCCCAAGTTAGACTGACTAGACTAGATA
1 ATTTAATGTCATCAGACCGATCAAATAGAATAAACCCCAAGTTAGACTGACTAGACTAGATA
* *
15714941 ATTTAATGTCATCAGACCGATCAAATAGAATAAACCCTAAGTTAGATTGACTAGA
1 ATTTAATGTCATCAGACCGATCAAATAGAATAAACCCCAAGTTAGACTGACTAGA
15714996 TCAGACATCT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 52 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (62 bp):
ATTTAATGTCATCAGACCGATCAAATAGAATAAACCCCAAGTTAGACTGACTAGACTAGATA
Found at i:15727396 original size:273 final size:273
Alignment explanation
Indices: 15726878--15727396 Score: 855
Period size: 273 Copynumber: 1.9 Consensus size: 273
15726868 CTTTTCCAAT
15726878 TTTGGTTGAAAATATTTGATAATTATCCAATGATGAGATTATTAGAAATTTCAAATGGTAAATTC
1 TTTGGTTGAAAATATTTGATAATTATCCAATGATGAGATTATTAGAAATTTCAAATGGTAAATTC
*
15726943 TTAAGAAATCTCTATGTGAGAAAATTCTTTAAATTTATCCCAAATGGTAGAAGAATTTAAATAAA
66 TTAAGAAATCTCTAAGTGAGAAAATTCTTTAAATTTATCCCAAATGGTAGAAGAATTTAAATAAA
* *
15727008 ATTTCAATTAAAAATAATTGTCATATTATTTTCCTTTCGAAGATAAAAAAATAAATAAAGAGAAA
131 ATTTCAATAAAAAATAATTGTCATATTATTTTCCTTTCGAAGATAAAAAAATAAATAAAGAAAAA
* ***
15727073 ATATTTCTAAATTGACCTAAATGGTGAAAATTTTAAAAATTTTGAAAAAAAGAAAATATTTCTAA
196 ATATTTCTAAATTGACCCAAATGGTGAAAATTTTAAAAATTAACAAAAAAAGAAAATATTTCTAA
15727138 ATTAACCTAAATA
261 ATTAACCTAAATA
*
15727151 TTTGGTTGAAAATATTTGATAATTATCCAATGATGAGATTCTTAGAAATTTCAAATGGTAAATTC
1 TTTGGTTGAAAATATTTGATAATTATCCAATGATGAGATTATTAGAAATTTCAAATGGTAAATTC
* * *
15727216 TTAAGAAATCTCTAAGTGAGAAATTTCTTTAAATTTGTCCCAAATGGTAGAAGAATTTAAATGAA
66 TTAAGAAATCTCTAAGTGAGAAAATTCTTTAAATTTATCCCAAATGGTAGAAGAATTTAAATAAA
*
15727281 ATTTTAATAAAAAATAATTGTCATATTATTTTCC-TTCTGAAGA-AAAAAAATAAATAAAGAAAA
131 ATTTCAATAAAAAATAATTGTCATATTATTTTCCTTTC-GAAGATAAAAAAATAAATAAAGAAAA
* * *
15727344 AATATTTCTAAATTGACCCAAATTGTGGCAAA-TTTAGAAATCTAACAAAAAAA
195 AATATTTCTAAATTGACCCAAATGGT-GAAAATTTTAAAAAT-TAACAAAAAAA
15727397 AGAGAATTTC
Statistics
Matches: 228, Mismatches: 15, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
272 54 0.24
273 174 0.76
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.35
Consensus pattern (273 bp):
TTTGGTTGAAAATATTTGATAATTATCCAATGATGAGATTATTAGAAATTTCAAATGGTAAATTC
TTAAGAAATCTCTAAGTGAGAAAATTCTTTAAATTTATCCCAAATGGTAGAAGAATTTAAATAAA
ATTTCAATAAAAAATAATTGTCATATTATTTTCCTTTCGAAGATAAAAAAATAAATAAAGAAAAA
ATATTTCTAAATTGACCCAAATGGTGAAAATTTTAAAAATTAACAAAAAAAGAAAATATTTCTAA
ATTAACCTAAATA
Found at i:15727411 original size:55 final size:54
Alignment explanation
Indices: 15727347--15727670 Score: 259
Period size: 56 Copynumber: 6.0 Consensus size: 54
15727337 AAGAAAAAAT
**
15727347 ATTTCTAAATTGACCCAAATTGTGGCAAATTTAGAAATCTAACAAAAAAAAGAGA
1 ATTTCTAAATTGACCCAAATTGTGAAAAATTTAGAAATCTAA-AAAAAAAAGAGA
* * * * * *
15727402 ATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAGATTTTGAAAAAAAGAAA-A-T
1 ATTTCTAAATTGACCCAAATTGTGAAAAATTTAGA-AATCT-AAAAAAA-AAAGAGA
* * * * * *
15727457 ATTTCTAAATTTACCTAAATAGTGAAAAATTTAAAAATCCAACAAAAAAGGAGAGA
1 ATTTCTAAATTGACCCAAATTGTGAAAAATTTAGAAATCTAA-AAAAAA-AAGAGA
* * * *** *
15727513 ATTTCTAAATAGGCCCAAATTATGAAAAATTTAGAAAT-TTTGAAAAAAA-A-T
1 ATTTCTAAATTGACCCAAATTGTGAAAAATTTAGAAATCTAAAAAAAAAAGAGA
* * * *
15727564 ATTTGTAAATTGACCCAAATGGTGGAAAATTTAGAAATCCAATAAAAAAAGAGAGA
1 ATTTCTAAATTGACCCAAATTGTGAAAAATTTAGAAATCTAA-AAAAAAA-AGAGA
* *
15727620 ATTTCTAAATATG-CCCAAA-TGTTGAAAATTTTAAAAAT-TAAAAAAAAAAGA
1 ATTTCTAAAT-TGACCCAAATTG-TGAAAAATTTAGAAATCTAAAAAAAAAAGA
15727671 AAATATTTCT
Statistics
Matches: 206, Mismatches: 49, Indels: 30
0.72 0.17 0.11
Matches are distributed among these distances:
51 32 0.16
52 1 0.00
53 13 0.06
54 21 0.10
55 64 0.31
56 68 0.33
57 7 0.03
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.27
Consensus pattern (54 bp):
ATTTCTAAATTGACCCAAATTGTGAAAAATTTAGAAATCTAAAAAAAAAAGAGA
Found at i:15727627 original size:107 final size:107
Alignment explanation
Indices: 15727340--15727658 Score: 426
Period size: 107 Copynumber: 2.9 Consensus size: 107
15727330 ATAAATAAAG
* * *
15727340 AAAAAATATTTCTAAATTGACCCAAATTGTGGCAAATTTAGAAATCTAACAAAAAAA-AGAGAAT
1 AAAAAATATTTCTAAATTGACCCAAATAGTGGAAAATTTAGAAATCCAACAAAAAAAGAGAGAAT
* *
15727404 TTCTAAATAGGCCCAAATGGTGAAAAATTTAGAGATTTTGAAAAA
66 TTCTAAATAGGCCCAAAT-TTGAAAAATTTAGAAATTTTG--AAA
* * * * *
15727449 AAGAAAATATTTCTAAATTTACCTAAATAGTGAAAAATTTAAAAATCCAACAAAAAAGGAGAGAA
1 AA-AAAATATTTCTAAATTGACCCAAATAGTGGAAAATTTAGAAATCCAACAAAAAAAGAGAGAA
15727514 TTTCTAAATAGGCCCAAATTATGAAAAATTTAGAAATTTTG-AA
65 TTTCTAAATAGGCCCAAATT-TGAAAAATTTAGAAATTTTGAAA
* * *
15727557 AAAAAATATTTGTAAATTGACCCAAATGGTGGAAAATTTAGAAATCCAATAAAAAAAGAGAGAAT
1 AAAAAATATTTCTAAATTGACCCAAATAGTGGAAAATTTAGAAATCCAACAAAAAAAGAGAGAAT
* * *
15727622 TTCTAAATATGCCCAAATGTTGAAAATTTTAAAAATT
66 TTCTAAATAGGCCCAAAT-TTGAAAAATTTAGAAATT
15727659 AAAAAAAAAA
Statistics
Matches: 185, Mismatches: 21, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
107 87 0.47
108 5 0.03
109 2 0.01
110 47 0.25
111 44 0.24
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.28
Consensus pattern (107 bp):
AAAAAATATTTCTAAATTGACCCAAATAGTGGAAAATTTAGAAATCCAACAAAAAAAGAGAGAAT
TTCTAAATAGGCCCAAATTTGAAAAATTTAGAAATTTTGAAA
Found at i:15727668 original size:56 final size:55
Alignment explanation
Indices: 15727347--15727670 Score: 238
Period size: 55 Copynumber: 5.9 Consensus size: 55
15727337 AAGAAAAAAT
**
15727347 ATTTCTAAAT-TGACCCAAAT-TGTGGCAAATTTAGAAATCTAACAAAAAAA-AGAGA
1 ATTTCTAAATATG-CCCAAATGT-TGAAAAATTTAGAAAT-TAACAAAAAAAGAGAGA
* * * *** *
15727402 ATTTCTAAATAGGCCCAAATGGTGAAAAATTTAGAGATTTTGAAAAAAAGA-AAA
1 ATTTCTAAATATGCCCAAATGTTGAAAAATTTAGAAATTAACAAAAAAAGAGAGA
* * * * * *
15727456 TATTTCTAAATTTACCTAAATAG-TGAAAAATTTAAAAATCCAACAAAAAAGGAGAGA
1 -ATTTCTAAATATGCCCAAAT-GTTGAAAAATTTAGAAAT-TAACAAAAAAAGAGAGA
* *** *
15727513 ATTTCTAAATAGGCCCAAAT-TATGAAAAATTTAGAAATT-TTGAAAAAA-A-A-T
1 ATTTCTAAATATGCCCAAATGT-TGAAAAATTTAGAAATTAACAAAAAAAGAGAGA
* * * * *
15727564 ATTTGTAAAT-TGACCCAAATGGTGGAAAATTTAGAAATCCAATAAAAAAAGAGAGA
1 ATTTCTAAATATG-CCCAAATGTTGAAAAATTTAGAAAT-TAACAAAAAAAGAGAGA
* * *
15727620 ATTTCTAAATATGCCCAAATGTTGAAAATTTTAAAAATTAAAAAAAAAAGA
1 ATTTCTAAATATGCCCAAATGTTGAAAAATTTAGAAATTAACAAAAAAAGA
15727671 AAATATTTCT
Statistics
Matches: 205, Mismatches: 47, Indels: 34
0.72 0.16 0.12
Matches are distributed among these distances:
50 1 0.00
51 31 0.15
52 1 0.00
53 8 0.04
54 16 0.08
55 73 0.36
56 71 0.35
57 4 0.02
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.27
Consensus pattern (55 bp):
ATTTCTAAATATGCCCAAATGTTGAAAAATTTAGAAATTAACAAAAAAAGAGAGA
Found at i:15730709 original size:33 final size:32
Alignment explanation
Indices: 15730700--15730761 Score: 72
Period size: 33 Copynumber: 1.9 Consensus size: 32
15730690 AATATAATTT
* * *
15730700 TATTTT-TATTTATTATTTTAATATAATATAA
1 TATTTTATTTTTATTATTTGAATATAATTTAA
*
15730731 TATTTTATTTTTTATTATTTGGATATAATTT
1 TATTTTA-TTTTTATTATTTGAATATAATTT
15730762 GATCACTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
31 6 0.24
33 19 0.76
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (32 bp):
TATTTTATTTTTATTATTTGAATATAATTTAA
Found at i:15737441 original size:46 final size:46
Alignment explanation
Indices: 15737388--15737500 Score: 172
Period size: 46 Copynumber: 2.5 Consensus size: 46
15737378 TAAAATTATG
* * *
15737388 AATCCTCAAATGAGAAGCTTTGAGTCTTAAATGAGAATCTTTAAGA
1 AATCCTCAAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAAA
*
15737434 AATCCTCAAATGAGAATCTTTTAGTCTTAAATAAGAATCTTTAAAA
1 AATCCTCAAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAAA
* *
15737480 AATTCTTAAATGAGAATCTTT
1 AATCCTCAAATGAGAATCTTT
15737501 AAGGAATCCA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 61 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (46 bp):
AATCCTCAAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAAA
Found at i:15737498 original size:71 final size:71
Alignment explanation
Indices: 15737412--15737712 Score: 253
Period size: 71 Copynumber: 4.3 Consensus size: 71
15737402 AAGCTTTGAG
15737412 TCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTTTTAGTCTTAAATAAGAATCTTTA
1 TCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTTTTAGTCTTAAATAAGAATCTTTA
* *
15737477 AAAAAT
66 AGACAT
* * * * * *
15737483 TCTTAAATGAGAATCTTTAAGGAATCCACAACTGAGAATCTCTGAGTCTTAAATGAGAATCTTTA
1 TCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTTTTAGTCTTAAATAAGAATCTTTA
*
15737548 AGACGT
66 AGACAT
* * * * * ** * *
15737554 GT-TCAAATGAGAAACTTT--G-AGT-CTTAAATGAAAATCTTAAAAATGTTTTCAAATAAAAAT
1 -TCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTT--TTA-GTCTT-AAATAAGAAT
*
15737614 CTTTTAG----
61 CTTTAAGACAT
* ** ** *
15737621 TCTTAAATGAAAATCTTTAAGATGTTTTCAAATGAGAATCTTTTAGTCTTAAATGAGAATCTTTA
1 TCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTTTTAGTCTTAAATAAGAATCTTTA
15737686 AGACAT
66 AGACAT
15737692 T-TTCAAATGAGAATCTTTAAG
1 TCTT-AAATGAGAATCTTTAAG
15737713 TCTTAAATGA
Statistics
Matches: 178, Mismatches: 37, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
66 1 0.01
67 38 0.21
68 6 0.03
69 4 0.02
70 8 0.04
71 120 0.67
72 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (71 bp):
TCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAATCTTTTAGTCTTAAATAAGAATCTTTA
AGACAT
Found at i:15737615 original size:117 final size:117
Alignment explanation
Indices: 15737387--15737617 Score: 297
Period size: 117 Copynumber: 2.0 Consensus size: 117
15737377 TTAAAATTAT
* * *
15737387 GAATCCTCAAATGAGAAGCTTTGAGTCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAATC
1 GAATCCACAAATGAGAAGCTCTGAGTCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAAAC
* * *
15737452 TTTTAGTCTTAAATAAGAATCTTTAAAAAATTCTTAAATGAGAATCTTTAAG
66 TTTGAGTCTTAAATAAGAATCTTTAAAAAATTCTTAAATAAAAATCTTTAAG
* * ** **
15737504 GAATCCACAACTGAGAATCTCTGAGTCTTAAATGAGAATCTTTAAGACGTGTTCAAATGAGAAAC
1 GAATCCACAAATGAGAAGCTCTGAGTCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAAAC
*
15737569 TTTGAGTCTTAAATGAA-AATC-TT-AAAAATGTTTTCAAATAAAAATCTTT
66 TTTGAGTCTTAAAT-AAGAATCTTTAAAAAAT-TCTT-AAATAAAAATCTTT
15737618 TAGTCTTAAA
Statistics
Matches: 98, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
115 6 0.06
116 5 0.05
117 85 0.87
118 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.33
Consensus pattern (117 bp):
GAATCCACAAATGAGAAGCTCTGAGTCTTAAATGAGAATCTTTAAGAAATCCTCAAATGAGAAAC
TTTGAGTCTTAAATAAGAATCTTTAAAAAATTCTTAAATAAAAATCTTTAAG
Found at i:15737734 original size:46 final size:46
Alignment explanation
Indices: 15737483--15737776 Score: 326
Period size: 46 Copynumber: 6.4 Consensus size: 46
15737473 TTTAAAAAAT
** * * *
15737483 TCTTAAATGAGAATCTTTAAG--GAATCCACAACTGAGAATCTCTGAG
1 TCTTAAATGAGAATCTTTAAGACGTTTTCA-AA-TGAGAATCTTTAAG
* * *
15737529 TCTTAAATGAGAATCTTTAAGACGTGTTCAAATGAGAAACTTTGAG
1 TCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAATCTTTAAG
* * * * * * *
15737575 TCTTAAATGAAAATCTTAAAAATGTTTTCAAATAAAAATCTTTTAG
1 TCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAATCTTTAAG
* * *
15737621 TCTTAAATGAAAATCTTTAAGATGTTTTCAAATGAGAATCTTTTAG
1 TCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAATCTTTAAG
*
15737667 TCTTAAATGAGAATCTTTAAGACATTTTCAAATGAGAATCTTTAAG
1 TCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAATCTTTAAG
* *
15737713 TCTTAAATGAGAATCTTTAAGACGTTTTAAAATGACAAGT-TTTGAA-
1 TCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAA-TCTTT-AAG
*
15737759 TCTTAAATAAGAATCTTT
1 TCTTAAATGAGAATCTTT
15737777 GAAAATTTTT
Statistics
Matches: 218, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
46 209 0.96
47 5 0.02
48 4 0.02
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (46 bp):
TCTTAAATGAGAATCTTTAAGACGTTTTCAAATGAGAATCTTTAAG
Found at i:15737779 original size:21 final size:21
Alignment explanation
Indices: 15737386--15737779 Score: 146
Period size: 25 Copynumber: 17.2 Consensus size: 21
15737376 GTTAAAATTA
* *
15737386 TGAATCCTCAAATGAGAAGCTT
1 TGAAT-CTTAAATGAGAATCTT
*
15737408 TGAGTCTTAAATGAGAATCTT
1 TGAATCTTAAATGAGAATCTT
*
15737429 TAAGAAATCCTCAAATGAGAATCTT
1 T--G-AAT-CTTAAATGAGAATCTT
* * *
15737454 TTAGTCTTAAATAAGAATCTT
1 TGAATCTTAAATGAGAATCTT
*
15737475 TAAAAAATTCTTAAATGAGAATCTT
1 T---GAA-TCTTAAATGAGAATCTT
* *
15737500 TAAGGAATC-CACAACTGAGAATCTC
1 T---GAATCTTA-AA-TGAGAATCTT
*
15737525 TGAGTCTTAAATGAGAATCTT
1 TGAATCTTAAATGAGAATCTT
* * *
15737546 TAAGACGTGTTCAAATGAGAAACTT
1 T--GA-ATCTT-AAATGAGAATCTT
* *
15737571 TGAGTCTTAAATGAAAATCTT
1 TGAATCTTAAATGAGAATCTT
** * * *
15737592 AAAAATGTTTTCAAATAAAAATCTT
1 -TGAA--TCTT-AAATGAGAATCTT
* * *
15737617 TTAGTCTTAAATGAAAATCTT
1 TGAATCTTAAATGAGAATCTT
* *
15737638 TAAGATGTTTTCAAATGAGAATCTT
1 T--GA-ATCTT-AAATGAGAATCTT
* *
15737663 TTAGTCTTAAATGAGAATCTT
1 TGAATCTTAAATGAGAATCTT
*
15737684 TAAGACATTTTCAAATGAGAATCTT
1 T--GA-ATCTT-AAATGAGAATCTT
15737709 T-AAGTCTTAAATGAGAATCTT
1 TGAA-TCTTAAATGAGAATCTT
* * *
15737730 TAAGACGTTTTAAAATGACAAGT-TT
1 T--GA-ATCTT-AAATGAGAA-TCTT
*
15737755 TGAATCTTAAATAAGAATCTT
1 TGAATCTTAAATGAGAATCTT
15737776 TGAA
1 TGAA
15737780 AATTTTTAAG
Statistics
Matches: 287, Mismatches: 50, Indels: 71
0.70 0.12 0.17
Matches are distributed among these distances:
20 1 0.00
21 106 0.37
22 31 0.11
23 12 0.04
24 26 0.09
25 110 0.38
26 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (21 bp):
TGAATCTTAAATGAGAATCTT
Found at i:15738355 original size:44 final size:43
Alignment explanation
Indices: 15738240--15738467 Score: 194
Period size: 44 Copynumber: 5.3 Consensus size: 43
15738230 GAGGAGCTTT
* * * *
15738240 ATTTATTTTTTTTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAG
1 ATTTATTTATTTTTCAAAGTTGTAGAGCCTTTGTTTAGAGGAG
* * *
15738283 A-CT-TTTATTTTTCAAAGTTGTTA-TGCCTTTGCTTAGAGGAG
1 ATTTATTTATTTTTCAAAGTTG-TAGAGCCTTTGTTTAGAGGAG
**
15738324 ATTTATTTATTTATTCAAAGTTGTAGAGCCTTTGTTTAGAATA-
1 ATTTATTTATTT-TTCAAAGTTGTAGAGCCTTTGTTTAGAGGAG
* * ** *
15738367 ACTTGATTTTTTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAG
1 A-TTTATTTATTTTTCAAAGTTGTAGAGCCTTTGTTTAGAGGAG
* * ** * *
15738411 CTTTGTTTACTTTTTCAAAGTCATGGAGCCTTTGTTTAAAGGAG
1 ATTTATTTA-TTTTTCAAAGTTGTAGAGCCTTTGTTTAGAGGAG
*
15738455 TTTTATGTTATTT
1 ATTTAT-TTATTT
15738468 AATGAGTCTG
Statistics
Matches: 151, Mismatches: 25, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
41 33 0.22
42 3 0.02
43 41 0.27
44 71 0.47
45 3 0.02
ACGTcount: A:0.23, C:0.10, G:0.18, T:0.49
Consensus pattern (43 bp):
ATTTATTTATTTTTCAAAGTTGTAGAGCCTTTGTTTAGAGGAG
Found at i:15738407 original size:87 final size:88
Alignment explanation
Indices: 15738285--15738448 Score: 217
Period size: 87 Copynumber: 1.9 Consensus size: 88
15738275 TAGAGGAGAC
** **
15738285 TTTTATTTTTCAAAGTTGTTATGCCTTTGCTTAGAGGAGATTTATTTA-TTTATTCAAAGTTGTA
1 TTTTATTTTTCAAAGTCATTATGCCTTTGCTTAGAGGAGATTTATTTACTTT-TTCAAAGTCATA
15738349 GAGCCTTTGTTTAGAATAACTTGA
65 GAGCCTTTGTTTAGAATAACTTGA
* * * *
15738373 TTTT-TTTTTCAAAGTCATTGA-GCCTTTGTTTAGAGGAGCTTTGTTTACTTTTTCAAAGTCATG
1 TTTTATTTTTCAAAGTCATT-ATGCCTTTGCTTAGAGGAGATTTATTTACTTTTTCAAAGTCATA
15738436 GAGCCTTTGTTTA
65 GAGCCTTTGTTTA
15738449 AAGGAGTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
87 58 0.88
88 8 0.12
ACGTcount: A:0.23, C:0.11, G:0.18, T:0.48
Consensus pattern (88 bp):
TTTTATTTTTCAAAGTCATTATGCCTTTGCTTAGAGGAGATTTATTTACTTTTTCAAAGTCATAG
AGCCTTTGTTTAGAATAACTTGA
Found at i:15739813 original size:113 final size:112
Alignment explanation
Indices: 15739677--15739963 Score: 377
Period size: 110 Copynumber: 2.6 Consensus size: 112
15739667 TTTTCCTTTC
* * * *
15739677 GAAAATAAAAAAATAAAGAGAAAATATTTTTAAATTGACCCAAATGGTGAAAAATTTAGAAATTC
1 GAAATTAAAAAAA-AAA-AGAAAATATTTCTAAATTGACCAAAATGGTGAAAAATTTAAAAATTC
15739742 AAC-AAAAAAGAGAGAATTTTTAAATAGGCCCAAATAG-TGAAAATTTTA
64 AACAAAAAAAGAGAGAATTTTTAAATAGGCCCAAATAGTTG-AAATTTTA
* * *
15739790 -AAATTTTCAAAAAAAAAAAGAAAATATTTCTAAATTGACCTAAATGGTGAAAATTTTAAAAATC
1 GAAA--TT-AAAAAAAAAAAGAAAATATTTCTAAATTGACCAAAATGGTGAAAAATTTAAAAATT
* *
15739854 CAACAAAAAAAGAGAGAATTTTTAAATAGGCCTAAATTGTTGAAATTTTA
63 CAACAAAAAAAGAGAGAATTTTTAAATAGGCCCAAATAGTTGAAATTTTA
* **
15739904 GAAATT--AAAAAAAAAGAAAATATTTCTAAATTAACCAAAATGGCAAAAAATTTAAAAATT
1 GAAATTAAAAAAAAAAAGAAAATATTTCTAAATTGACCAAAATGGTGAAAAATTTAAAAATT
15739964 TTAAAAAAAT
Statistics
Matches: 154, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
110 48 0.31
112 3 0.02
113 47 0.31
114 44 0.29
115 12 0.08
ACGTcount: A:0.55, C:0.07, G:0.11, T:0.27
Consensus pattern (112 bp):
GAAATTAAAAAAAAAAAGAAAATATTTCTAAATTGACCAAAATGGTGAAAAATTTAAAAATTCAA
CAAAAAAAGAGAGAATTTTTAAATAGGCCCAAATAGTTGAAATTTTA
Found at i:15739888 original size:56 final size:55
Alignment explanation
Indices: 15739684--15739972 Score: 237
Period size: 58 Copynumber: 5.1 Consensus size: 55
15739674 TTCGAAAATA
* * * *
15739684 AAAAAATAAAGAGAAAATATTTTTAAATTGACCCAAATGGTGAAAAATTTAGAAATTC
1 AAAAAA-AAAGAG-AGA-ATTTTTAAATAGACCCAAATGGTGAAAATTTTAAAAATTC
* * * *
15739742 AACAAAAAAGAGAGAATTTTTAAATAGGCCCAAATAGTGAAAATTTTAAAATTTTC
1 AAAAAAAAAGAGAGAATTTTTAAATAGACCCAAATGGTGAAAATTTTAAAA-ATTC
* * * * *
15739798 AAAAAAAAAAAGAAAATATTTCTAAATTGACCTAAATGGTGAAAATTTTAAAAATCC
1 AAAAAAAAAGAGAGAAT-TTT-TAAATAGACCCAAATGGTGAAAATTTTAAAAATTC
* * * *
15739855 AACAAAAAAAGAGAGAATTTTTAAATAGGCCTAAATTGTTG-AAATTTTAGAAATT-
1 AA-AAAAAAAGAGAGAATTTTTAAATAGACCCAAA-TGGTGAAAATTTTAAAAATTC
* ** * *
15739910 AAAAAAAAAGA-A-AATATTTCTAAATTA-ACCAAAATGGCAAAAAATTTAAAAATTT
1 AAAAAAAAAGAGAGAAT-TTT-TAAA-TAGACCCAAATGGTGAAAATTTTAAAAATTC
*
15739965 TAAAAAAA
1 AAAAAAAA
15739973 TATTTCTAAT
Statistics
Matches: 189, Mismatches: 32, Indels: 23
0.77 0.13 0.09
Matches are distributed among these distances:
52 3 0.02
53 6 0.03
54 30 0.16
55 42 0.22
56 43 0.23
57 20 0.11
58 45 0.24
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.27
Consensus pattern (55 bp):
AAAAAAAAAGAGAGAATTTTTAAATAGACCCAAATGGTGAAAATTTTAAAAATTC
Found at i:15748307 original size:67 final size:69
Alignment explanation
Indices: 15748187--15748318 Score: 182
Period size: 68 Copynumber: 1.9 Consensus size: 69
15748177 TTTTTTTAAA
* * *
15748187 AAAAGAAAAAATAATTTCAAAAAAATTTTTAAAACAAGTTGAAAGTATTAATTTTT-TTAAATAA
1 AAAAGAAAAAATAATTTCAAAAAAATTTTGAAAACAAATTGAAAGTATCAATTTTTCTTAAATAA
15748251 TTTT
66 TTTT
*
15748255 AAAATAAAAAAT-ATTTCAAAAAATATTTTGACAAA-AAATTG-AAGTATCAATTTTTCTTAAAT
1 AAAAGAAAAAATAATTTCAAAAAA-ATTTTGA-AAACAAATTGAAAGTATCAATTTTTCTTAAAT
15748317 AA
64 AA
15748319 AAAAATTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
67 24 0.42
68 30 0.53
69 3 0.05
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (69 bp):
AAAAGAAAAAATAATTTCAAAAAAATTTTGAAAACAAATTGAAAGTATCAATTTTTCTTAAATAA
TTTT
Found at i:15748338 original size:18 final size:19
Alignment explanation
Indices: 15748303--15748340 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
15748293 TTGAAGTATC
* *
15748303 AATTTTTCTTAAATAAAAA
1 AATTTTTCTAAAAAAAAAA
15748322 AATTTTTC-AAAAAAAAAA
1 AATTTTTCTAAAAAAAAAA
15748340 A
1 A
15748341 GTTTGAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
AATTTTTCTAAAAAAAAAA
Found at i:15748361 original size:61 final size:59
Alignment explanation
Indices: 15748256--15748497 Score: 228
Period size: 61 Copynumber: 4.1 Consensus size: 59
15748246 AATAATTTTA
* * * * * *
15748256 AAAT-AAAAAATATTTC-AAAAAATATTTTGACAAAAAATTGAAGTATCAATTTTTCTT
1 AAATAAAAAAATTTTTCAAAAAAAAAGTTTGAGAAAAAGTGGAAGTATCAATTTTTCTT
*
15748313 AAATAAAAAAATTTTTCAAAAAAAAAAAGTTTGAGAAAAAGTGGAAGTATTAATTTTTCTT
1 AAATAAAAAAATTTTTC--AAAAAAAAAGTTTGAGAAAAAGTGGAAGTATCAATTTTTCTT
* * * * *
15748374 AAATAAAAAAATATTTC--AAAAAAA-TTTAAGGAAAAGTTGAAATATCAATTTTTCTT
1 AAATAAAAAAATTTTTCAAAAAAAAAGTTTGAGAAAAAGTGGAAGTATCAATTTTTCTT
*** * *
15748430 AAAT-AAAAAATATTTT-AAAAAATTTGTTTGAGAAAAAAATTGAAAGTATCAATTTTTTCTT
1 AAATAAAAAAAT-TTTTCAAAAAAAAAGTTTGAG--AAAAAGTGGAAGTATCAA-TTTTTCTT
15748491 AAATAAA
1 AAATAAA
15748498 GCATTTTTTT
Statistics
Matches: 150, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
55 7 0.05
56 34 0.23
57 15 0.10
58 16 0.11
60 13 0.09
61 63 0.42
62 2 0.01
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (59 bp):
AAATAAAAAAATTTTTCAAAAAAAAAGTTTGAGAAAAAGTGGAAGTATCAATTTTTCTT
Found at i:15748487 original size:117 final size:117
Alignment explanation
Indices: 15748256--15748497 Score: 296
Period size: 117 Copynumber: 2.1 Consensus size: 117
15748246 AATAATTTTA
* *
15748256 AAAT-AAAAAATATTTCAAAAAATATTTTGACAAAAAATTGAAGTATCAATTTTTCTTAAATAAA
1 AAATAAAAAAATATTTCAAAAAATATTTTAACAAAAAATTGAAATATCAATTTTTCTTAAATAAA
* *
15748320 AAAATTTTTCAAAAAAAAAAAGTTTGAGAAAAAGTGGAAGTATTAATTTTTCTT
66 AAAATTTTT--AAAAAAAAAAGTTTGAGAAAAAGTGAAAGTATCAATTTTTCTT
** *
15748374 AAATAAAAAAATATTTCAAAAAA-A-TTTAAGGAAAAGTTGAAATATCAATTTTTCTTAAAT-AA
1 AAATAAAAAAATATTTCAAAAAATATTTTAACAAAAAATTGAAATATCAATTTTTCTTAAATAAA
*** *
15748436 AAAATATTTT-AAAAAATTTGTTTGAGAAAAAAATTGAAAGTATCAATTTTTTCTT
66 AAAAT-TTTTAAAAAAAAAAGTTTGAG--AAAAAGTGAAAGTATCAA-TTTTTCTT
15748491 AAATAAA
1 AAATAAA
15748498 GCATTTTTTT
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
114 13 0.12
116 22 0.20
117 50 0.46
118 5 0.05
119 18 0.17
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.35
Consensus pattern (117 bp):
AAATAAAAAAATATTTCAAAAAATATTTTAACAAAAAATTGAAATATCAATTTTTCTTAAATAAA
AAAATTTTTAAAAAAAAAAGTTTGAGAAAAAGTGAAAGTATCAATTTTTCTT
Found at i:15749508 original size:62 final size:61
Alignment explanation
Indices: 15749393--15749556 Score: 159
Period size: 62 Copynumber: 2.6 Consensus size: 61
15749383 ATATGAAGGG
* ** ** *
15749393 ATTATTTAAGATATTTTTGATTAAAAATATCTTAAATAATCTTTAATATTTTTTTAAAAGAA
1 ATTATTTAAGACATTTTTGACCAAAAATGCCTTAAATAATCTTT-ATAATTTTTTAAAAGAA
* * * *
15749455 ATTATTTAAGGCATTTTTGACCAAAAATGCCTTAAATAATACTTT-TCAATTTTTTGAAGGAT
1 ATTATTTAAGACATTTTTGACCAAAAATGCCTTAAATAAT-CTTTAT-AATTTTTTAAAAGAA
* * * *
15749517 ATTAGTTAAGTCATTTTTGGTCCAAAAGTGCCTTAAATAA
1 ATTATTTAAGACATTTTT-GACCAAAAATGCCTTAAATAA
15749557 ATACCATTTA
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
61 1 0.01
62 61 0.72
63 23 0.27
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (61 bp):
ATTATTTAAGACATTTTTGACCAAAAATGCCTTAAATAATCTTTATAATTTTTTAAAAGAA
Found at i:15749665 original size:43 final size:43
Alignment explanation
Indices: 15749618--15749703 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
15749608 ATGCCTTAAA
* * *
15749618 TAATCTTTACTTTTTTAAAAAAAAGATTATTTAAAACGTTTTT
1 TAATCTTTAATTTTTTAAAAAAAAGACTATTTAAAACATTTTT
** * *
15749661 TAATCTTTAATTTTTTTTAAAAATGACTATTTAAGACATTTTT
1 TAATCTTTAATTTTTTAAAAAAAAGACTATTTAAAACATTTTT
15749704 GACCAAAAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (43 bp):
TAATCTTTAATTTTTTAAAAAAAAGACTATTTAAAACATTTTT
Found at i:15749755 original size:61 final size:60
Alignment explanation
Indices: 15749661--15749905 Score: 221
Period size: 61 Copynumber: 4.0 Consensus size: 60
15749651 AAACGTTTTT
* *
15749661 TAATCTTTAATTTTTTTTAAAAATG-ACTATTTAAGACATTTTTGACCAAAAAGTCTTAAA
1 TAATCTTTAATTTTTTTT-AAAAGGAATTATTTAAGACATTTTTGACCAAAAAGTCTTAAA
* * ** * *
15749721 TAATCTCTAATATTTTTTT-AAAGAGAATTATTTAAGACGTTTTTGATTAAAAACTCCATAAA
1 TAATCTTTAAT-TTTTTTTAAAAG-GAATTATTTAAGACATTTTTGACCAAAAAGT-CTTAAA
* * *
15749783 TAATCTTTAATATTTTTTTAAAA-GAGATTATTTAAGACGTTTTTTATCACAAACA-TCTTAAA
1 TAATCTTTAAT-TTTTTTTAAAAGGA-ATTATTTAAGACATTTTTGA-C-CAAAAAGTCTTAAA
* * ** *
15749845 TAACCTTTAATTTTTTTTAAAAGGGATTATTTAAGGTATTTTTGGTA-AAAAAAGTCTTAAA
1 TAATCTTTAATTTTTTTTAAAAGGAATTATTTAAGACATTTTT-G-ACCAAAAAGTCTTAAA
15749906 CAATACCCTT
Statistics
Matches: 151, Mismatches: 22, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
59 3 0.02
60 15 0.10
61 66 0.44
62 58 0.38
63 5 0.03
64 4 0.03
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (60 bp):
TAATCTTTAATTTTTTTTAAAAGGAATTATTTAAGACATTTTTGACCAAAAAGTCTTAAA
Found at i:15749794 original size:62 final size:60
Alignment explanation
Indices: 15749661--15749879 Score: 246
Period size: 62 Copynumber: 3.6 Consensus size: 60
15749651 AAACGTTTTT
* * * * *
15749661 TAATCTTTAATTTTTTTTAAAAATG-ACTATTTAAGACATTTTTGACCAAAAAGTCTTAAA
1 TAATCTTTAATTTTTTTT-AAAAGGAATTATTTAAGACGTTTTTGATCAAAAACTCTTAAA
* * *
15749721 TAATCTCTAATATTTTTTT-AAAGAGAATTATTTAAGACGTTTTTGATTAAAAACTCCATAAA
1 TAATCTTTAAT-TTTTTTTAAAAG-GAATTATTTAAGACGTTTTTGATCAAAAACT-CTTAAA
* *
15749783 TAATCTTTAATATTTTTTTAAAA-GAGATTATTTAAGACGTTTTTTATCACAAACATCTTAAA
1 TAATCTTTAAT-TTTTTTTAAAAGGA-ATTATTTAAGACGTTTTTGATCAAAAAC-TCTTAAA
* *
15749845 TAACCTTTAATTTTTTTTAAAAGGGATTATTTAAG
1 TAATCTTTAATTTTTTTTAAAAGGAATTATTTAAG
15749880 GTATTTTTGG
Statistics
Matches: 136, Mismatches: 15, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
59 3 0.02
60 11 0.08
61 54 0.40
62 64 0.47
63 4 0.03
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (60 bp):
TAATCTTTAATTTTTTTTAAAAGGAATTATTTAAGACGTTTTTGATCAAAAACTCTTAAA
Found at i:15749887 original size:123 final size:122
Alignment explanation
Indices: 15749661--15749888 Score: 293
Period size: 123 Copynumber: 1.9 Consensus size: 122
15749651 AAACGTTTTT
*
15749661 TAATCTTTAATTTTTTTTAAAAATGACTATTTAAGACATTTTTGACCAAAAAGTCTTAAATAATC
1 TAATCTTTAATTTTTTTTAAAAATGACTATTTAAGACATTTTTGACCAAAAAGTCTTAAATAACC
*
15749726 TCTAATATTTTTTTAAAGAGAATTATTTAAGACGTTTTTGATTAAAAACTCCATAAA
66 TCTAATATTTTTTTAAAGAGAATTATTTAAGACATTTTTGATTAAAAACTCCATAAA
* * * *
15749783 TAATCTTTAATATTTTTTTAAAAGA-GATTATTTAAGACGTTTTTTATCACAAACA-TCTTAAAT
1 TAATCTTTAAT-TTTTTTTAAAA-ATGACTATTTAAGACATTTTTGA-C-CAAAAAGTCTTAAAT
* * **
15749846 AACCTTTAAT-TTTTTTTAAA-AGGGATTATTTAAGGTATTTTTG
62 AACCTCTAATATTTTTTTAAAGA-GAATTATTTAAGACATTTTTG
15749889 GTAAAAAAAG
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
122 12 0.13
123 56 0.62
124 18 0.20
125 5 0.05
ACGTcount: A:0.38, C:0.09, G:0.08, T:0.45
Consensus pattern (122 bp):
TAATCTTTAATTTTTTTTAAAAATGACTATTTAAGACATTTTTGACCAAAAAGTCTTAAATAACC
TCTAATATTTTTTTAAAGAGAATTATTTAAGACATTTTTGATTAAAAACTCCATAAA
Found at i:15750349 original size:14 final size:15
Alignment explanation
Indices: 15750321--15750353 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15750311 CGACCTCTCC
*
15750321 TTTTAGCATTTATTT
1 TTTTAGCATTAATTT
15750336 TTTTAG-ATTAATTT
1 TTTTAGCATTAATTT
15750350 TTTT
1 TTTT
15750354 TTAAGATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.70
Consensus pattern (15 bp):
TTTTAGCATTAATTT
Found at i:15750355 original size:17 final size:18
Alignment explanation
Indices: 15750328--15750366 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
15750318 TCCTTTTAGC
*
15750328 ATTTATTTTTTTAGATTA
1 ATTTATTTTTTAAGATTA
15750346 ATTT-TTTTTTAAGATT-
1 ATTTATTTTTTAAGATTA
15750362 ATTTA
1 ATTTA
15750367 AGGCGTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 4 0.21
17 11 0.58
18 4 0.21
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (18 bp):
ATTTATTTTTTAAGATTA
Found at i:15750499 original size:24 final size:24
Alignment explanation
Indices: 15750472--15750523 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
15750462 TCATTTAATT
15750472 TTTTGTAAAAGATTATTTAAGACA
1 TTTTGTAAAAGATTATTTAAGACA
* *
15750496 TTTTGTAAATGATTATTTAAGGCA
1 TTTTGTAAAAGATTATTTAAGACA
15750520 TTTT
1 TTTT
15750524 TTGGCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.48
Consensus pattern (24 bp):
TTTTGTAAAAGATTATTTAAGACA
Found at i:15750646 original size:61 final size:61
Alignment explanation
Indices: 15750507--15750655 Score: 190
Period size: 61 Copynumber: 2.4 Consensus size: 61
15750497 TTTGTAAATG
* * ** *
15750507 ATTATTTAAGGCATTTTTTGGCAAAAAATGCCTTAAATAATCTTCAAAAAAATTGAATATA
1 ATTATTTAAGGCATTTTTAGCCAAAAAACACCTTAAATAATCTTCAAAAAAATTGAATAGA
*** * *
15750568 ATTATTTAAGATGTTTTTAGCCAGAAAACACCTTAAATAATCTTTAAAAAAATTGAATAGA
1 ATTATTTAAGGCATTTTTAGCCAAAAAACACCTTAAATAATCTTCAAAAAAATTGAATAGA
15750629 ATTATTTAAGGCATTTTTCATGCCAAA
1 ATTATTTAAGGCATTTTT-A-GCCAAA
15750656 CACCATTAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
61 66 0.92
62 1 0.01
63 5 0.07
ACGTcount: A:0.43, C:0.11, G:0.10, T:0.36
Consensus pattern (61 bp):
ATTATTTAAGGCATTTTTAGCCAAAAAACACCTTAAATAATCTTCAAAAAAATTGAATAGA
Found at i:15753554 original size:17 final size:18
Alignment explanation
Indices: 15753532--15753566 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15753522 TAAACCATTA
15753532 TTTTATA-CTTTATTATT
1 TTTTATATCTTTATTATT
*
15753549 TTTTATATCTTTTTTATT
1 TTTTATATCTTTATTATT
15753567 CCCATTCTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.20, C:0.06, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATATCTTTATTATT
Found at i:15755691 original size:46 final size:45
Alignment explanation
Indices: 15755641--15755801 Score: 148
Period size: 46 Copynumber: 3.5 Consensus size: 45
15755631 ATCCCCAAAG
* * *
15755641 TTTTTGAATGAGAACCTTTGAAATATTGGACGTGAAACACTAAATT
1 TTTTTGAATGAGAATCTTTGAAATATTGGA-GTGAATCACTAAAAT
* * * * *
15755687 TTTTTGAATAAGAATCTTTG-AATTTTGGTTAG-GGATCCCTAGAAGT
1 TTTTTGAATGAGAATCTTTGAAATATTGG--AGTGAATCACTA-AAAT
*
15755733 CTTTTGAATGAGAATCTTTGAAATATTGGATGTGAATCACTAAAA-
1 TTTTTGAATGAGAATCTTTGAAATATTGGA-GTGAATCACTAAAAT
** *
15755778 TTTTCAAATAAGAATCTTTGAAAT
1 TTTTTGAATGAGAATCTTTGAAAT
15755802 TTTTAATGTG
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
45 34 0.37
46 43 0.47
47 15 0.16
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (45 bp):
TTTTTGAATGAGAATCTTTGAAATATTGGAGTGAATCACTAAAAT
Found at i:15755741 original size:92 final size:91
Alignment explanation
Indices: 15755638--15755804 Score: 255
Period size: 92 Copynumber: 1.8 Consensus size: 91
15755628 TGAATCCCCA
* **
15755638 AAGTTTTTGAATGAGAACCTTTGAAATATTGGACGTGAAACACTAAATTTTTTTGAATAAGAATC
1 AAGTTTTTGAATGAGAACCTTTGAAATATTGGACGTGAAACACTAAA-ATTTTCAAATAAGAATC
15755703 TTTG-AATTTTGGTTAGGGATCCCTAG
65 TTTGAAATTTTGGTTAGGGATCCCTAG
* * *
15755729 AAGTCTTTTGAATGAGAATCTTTGAAATATTGGATGTGAATCACTAAAATTTTCAAATAAGAATC
1 AAGT-TTTTGAATGAGAACCTTTGAAATATTGGACGTGAAACACTAAAATTTTCAAATAAGAATC
15755794 TTTGAAATTTT
65 TTTGAAATTTT
15755805 TAATGTGAAC
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
91 22 0.32
92 46 0.68
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (91 bp):
AAGTTTTTGAATGAGAACCTTTGAAATATTGGACGTGAAACACTAAAATTTTCAAATAAGAATCT
TTGAAATTTTGGTTAGGGATCCCTAG
Found at i:15755799 original size:45 final size:45
Alignment explanation
Indices: 15755625--15755801 Score: 160
Period size: 45 Copynumber: 3.9 Consensus size: 45
15755615 AAAAAATTTT
* * * * *
15755625 ATGTGAATCCCCAAAGTTTTTGAATGAGAACCTTTGAAATATTGG
1 ATGTGAATCACTAAAATTTTTGAATAAGAATCTTTGAAATATTGG
* * * *
15755670 ACGTGAAACACTAAATTTTTTTGAATAAGAATCTTTG-AATTTTGG
1 ATGTGAATCACTAAA-ATTTTTGAATAAGAATCTTTGAAATATTGG
* * * * *
15755715 TTAG-GGATCCCTAGAAGTCTTTTGAATGAGAATCTTTGAAATATTGG
1 AT-GTGAATCACTA-AAAT-TTTTGAATAAGAATCTTTGAAATATTGG
**
15755762 ATGTGAATCACTAAAATTTTCAAATAAGAATCTTTGAAAT
1 ATGTGAATCACTAAAATTTTTGAATAAGAATCTTTGAAAT
15755802 TTTTAATGTG
Statistics
Matches: 103, Mismatches: 23, Indels: 12
0.75 0.17 0.09
Matches are distributed among these distances:
45 45 0.44
46 43 0.42
47 15 0.15
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.36
Consensus pattern (45 bp):
ATGTGAATCACTAAAATTTTTGAATAAGAATCTTTGAAATATTGG
Found at i:15755976 original size:18 final size:17
Alignment explanation
Indices: 15755928--15756003 Score: 75
Period size: 16 Copynumber: 4.5 Consensus size: 17
15755918 AGCTCTTATC
*
15755928 AATCTTCAATTCTTGCC
1 AATCTTCAATTCTTGCA
* * *
15755945 AATATAC-ATTCTTGCG
1 AATCTTCAATTCTTGCA
15755961 AATCTTCAAGTTCTTGCA
1 AATCTTCAA-TTCTTGCA
*
15755979 AATCTT-AATTCTGGCA
1 AATCTTCAATTCTTGCA
*
15755995 AATTTTCAA
1 AATCTTCAA
15756004 AAATTTTGTA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
16 25 0.52
17 10 0.21
18 13 0.27
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.39
Consensus pattern (17 bp):
AATCTTCAATTCTTGCA
Found at i:15755990 original size:34 final size:33
Alignment explanation
Indices: 15755928--15756034 Score: 83
Period size: 34 Copynumber: 3.1 Consensus size: 33
15755918 AGCTCTTATC
* *
15755928 AATCTTCAATTCTTGCCAAT-ATACATTCTTGCG
1 AATCTTCAATTCTTGCAAATCTTA-ATTCTTGCG
* *
15755961 AATCTTCAAGTTCTTGCAAATCTTAATTCTGGCA
1 AATCTTCAA-TTCTTGCAAATCTTAATTCTTGCG
* * *
15755995 AATTTTCAAAAATT-TTGTAAATCTTTAATTCTTGTG
1 AATCTTC---AATTCTTGCAAATC-TTAATTCTTGCG
15756031 AATC
1 AATC
15756035 CAAAACATTG
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
33 9 0.16
34 23 0.40
35 10 0.17
36 14 0.24
37 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (33 bp):
AATCTTCAATTCTTGCAAATCTTAATTCTTGCG
Found at i:15756203 original size:22 final size:21
Alignment explanation
Indices: 15756144--15756203 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
15756134 AAACCTTGCA
15756144 AATCTTTGAATTTCAAAATTGTG
1 AATCTTT-AATTTC-AAATTGTG
* * **
15756167 ATTTTTTAAACTCAAATTGTG
1 AATCTTTAATTTCAAATTGTG
15756188 AATCTTTAAGTTTCAA
1 AATCTTTAA-TTTCAA
15756204 CTTGCATTGC
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
21 15 0.54
22 8 0.29
23 5 0.18
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (21 bp):
AATCTTTAATTTCAAATTGTG
Found at i:15758271 original size:16 final size:17
Alignment explanation
Indices: 15758244--15758276 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
15758234 ATCAATTTTT
*
15758244 TAAAAATAATTTTAAAA
1 TAAAAATAATTTCAAAA
15758261 TAAAAAT-ATTTCAAAA
1 TAAAAATAATTTCAAAA
15758277 AATGTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAAATAATTTCAAAA
Found at i:15758330 original size:58 final size:60
Alignment explanation
Indices: 15758254--15758381 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 60
15758244 TAAAAATAAT
*
15758254 TTTAAA-ATAAAAATATTTC-AAAAAATGTTTTGA-GAAAAAATTG-AACTATCAATTTTC
1 TTTAAATAAAAAAATATTTCAAAAAAATG-TTTGAGGAAAAAATTGAAACTATCAATTTTC
* * *
15758311 TTTAAATAAAAAAATATTTCAAAAAAATGTTTGAGGAAAAAGTTGAAAGTATCAATTTTT
1 TTTAAATAAAAAAATATTTCAAAAAAATGTTTGAGGAAAAAATTGAAACTATCAATTTTC
15758371 TCTTAAATAAA
1 T-TTAAATAAA
15758382 GCATTTTTCT
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
57 6 0.10
58 17 0.27
59 17 0.27
60 13 0.21
61 9 0.15
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (60 bp):
TTTAAATAAAAAAATATTTCAAAAAAATGTTTGAGGAAAAAATTGAAACTATCAATTTTC
Found at i:15762366 original size:29 final size:31
Alignment explanation
Indices: 15762321--15762390 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 31
15762311 TGGCCATTGC
* *
15762321 ATTA-TTATTTCATTATTTGAATATAATTTT
1 ATTATTTATTTCATTATTTAAATATAATTTA
15762351 ATT-TTTATTT-ATTATTTAAATATAATTTA
1 ATTATTTATTTCATTATTTAAATATAATTTA
15762380 ATTATTTATTT
1 ATTATTTATTT
15762391 TTTAATGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 20 0.56
30 16 0.44
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.63
Consensus pattern (31 bp):
ATTATTTATTTCATTATTTAAATATAATTTA
Found at i:15768876 original size:12 final size:12
Alignment explanation
Indices: 15768859--15768898 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
15768849 CAAATGGTCT
15768859 AAAAAAATGAAA
1 AAAAAAATGAAA
*
15768871 AAAAAAAAGAAA
1 AAAAAAATGAAA
*
15768883 AAAAAAGTGATAA
1 AAAAAAATGA-AA
15768896 AAA
1 AAA
15768899 TATATTTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.07
Consensus pattern (12 bp):
AAAAAAATGAAA
Found at i:15769203 original size:35 final size:35
Alignment explanation
Indices: 15769158--15769262 Score: 142
Period size: 35 Copynumber: 3.0 Consensus size: 35
15769148 AGTATTTTTG
* * *
15769158 GAAAAAACATTTGCATTTCATTGA-CATCTTTTTAA
1 GAAAAGACATTTGCATCTCA-TGAGCATCATTTTAA
*
15769193 GAAAAGACATTTACATCTCATGTA-CATCATTTTAA
1 GAAAAGACATTTGCATCTCATG-AGCATCATTTTAA
15769228 GAAAAGACATTTGCATCTCATGAGCATCATTTTAA
1 GAAAAGACATTTGCATCTCATGAGCATCATTTTAA
15769263 AAATATATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
34 3 0.05
35 60 0.95
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.35
Consensus pattern (35 bp):
GAAAAGACATTTGCATCTCATGAGCATCATTTTAA
Found at i:15769781 original size:43 final size:43
Alignment explanation
Indices: 15769644--15769795 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 43
15769634 TTGCACTTAT
*** ***
15769644 ATTTTCTCGATGGTGATATCCAAACATTAAAAAATT-ATTTAC
1 ATTTTCTCGATGGTGATATCCAAGTGTTAAAGGTTTGATTTAC
* * **
15769686 ATTTTCTCGATGGTGATATCCGAGTGTT-AAGGTTTGAATTGT
1 ATTTTCTCGATGGTGATATCCAAGTGTTAAAGGTTTGATTTAC
*
15769728 ATCTTCTCGATGGTGATATCCAAGTGTTAAAGGTTTGATTTAC
1 ATTTTCTCGATGGTGATATCCAAGTGTTAAAGGTTTGATTTAC
* *
15769771 ATTTTTTCGATGGTGATATTCAAGT
1 ATTTTCTCGATGGTGATATCCAAGT
15769796 TCCTTTGGTG
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
41 4 0.04
42 53 0.59
43 33 0.37
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (43 bp):
ATTTTCTCGATGGTGATATCCAAGTGTTAAAGGTTTGATTTAC
Found at i:15769902 original size:99 final size:99
Alignment explanation
Indices: 15769731--15771326 Score: 1762
Period size: 99 Copynumber: 16.2 Consensus size: 99
15769721 GAATTGTATC
* *
15769731 TTCTCGATGGTGATATCCAAGTGTTAAAGGTTTGATTTACATTTTTTCGATGGTGATATTCAAG-
1 TTCTCGATGGTGATATCCGAGTGTTAAA-GTTTGATTTACATTTTTTCGATGGTGATATTCGAGT
* *
15769795 TTCCTTTGGTGACGATATCCGAAGTCATTTGCATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * *
15769830 TTCTCGATGGTGATATCCGAATTTTAAAATTTGATTTACATTTTTTCGATGATGATATTCGAGTT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
* * *
15769895 TCTTTTGGTGGCGATATCCGAAGTCATTTACATA
66 TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * * * * * * * *
15769929 TTCT-TAGTGGTGATCTCCAAGTTTTAAAGCTTCAATTGCACTTTTTCGATGGTGATATTCAAGT
1 TTCTCGA-TGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGT
* *
15769993 TTTCTTCGGTAGCGATATCC-ATAGTCATTTGCATA
65 TTCCTTCGGTGGCGATATCCGA-AGTCATTTGCATA
* * * * **
15770028 TCCTTGGTGGTGATATCTGAGTGTTAAAGTTTGATTTACATTTTCTT-GATTATGATATTCGAGT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTT-TTCGATGGTGATATTCGAGT
* ** * *
15770092 TTTCTTCATTGGTGATATCCGAAGTCATTTACATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * * * *
15770127 TTCTC-AGTGGTGATATCCGAGTGATAAGGTTTGATTTATATTTTTTTGATGATGATATTCAAGT
1 TTCTCGA-TGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGT
* * *
15770191 TTCCTTCGATGGCGATATCCAAAGTCA-TTACATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* *
15770225 TCCT-TAGTGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTT-GATGGTGATATTCGAGT
1 TTCTCGA-TGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGT
* *** **
15770288 TTTCTTCGGTGATAATATCTAAAGTCATTTGCATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * * *
15770323 TTCTC-AGTGGTGATATCCGAGTGATAAGGTTTAATTTATATTTTTT-TATGGTGATATTCGAGT
1 TTCTCGA-TGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGT
* * * *
15770386 TTCTTTCAGTGACGATATCCAAAGTCATTTGCATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* ** * * * *
15770421 TTCTCGATGGTGATATCCGAGTGATAGGGTTTGATTTTCATTTTCTCAATGATGATATTCGAGTT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
* ** *
15770486 TCCTTTGGTGATGATATTCGAAGTCATTTGCATA
66 TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * * * ** *
15770520 TTCTTGGTGGTG--ATCCAAGTGATAAGGTTTGATTTGTATTTTCTCGATGGTGATATTCGAGTT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
* * * *
15770583 TCCTTCGATGGTGATATCTGAAGTCATTTACATA
66 TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * ** *
15770617 TTCTCGATGGTGATATCCAAGTGTTAAAGCTTGATTTATATTTTTTTTATGATGATATTCGAGTT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
*
15770682 TCCTTCAGTGGCGATATCCGAAGTCATTTGCATA
66 TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * *
15770716 TTCTCGATGGTGATATCCGAATGTTAAAGCTTGATTTGCATTTTCTCGATGGTGATATTCGAGTT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
* *
15770781 TCCTTCGATGGTGATATCCGAAGTCATTTGCATA
66 TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * **
15770815 TTCTCCATGGTGATATCCGAGTGTTAAAACTTT-ATTTGTATTTTTTCGATGGTGATATTCGAGT
1 TTCTCGATGGTGATATCCGAGTGTT-AAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGT
* * * *
15770879 TTCTTTCGATTGCGATATCTGAAGTCATTTGCATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * *
15770914 TTCTCGATGGTGATATCCGAGTGTTAAAGCTTGATTTATATTTTTTCAATGGTGATATTCGAGTT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
* * * *
15770979 TCCTTCAGTGGTGATATCTGAAGTCATTTACATA
66 TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* *
15771013 TTCTCGATGGTGATATCTGAGTGTTAAAAGTTTGATTTACATTTTTTGGATGGTGATATTCGAGT
1 TTCTCGATGGTGATATCCGAGTGTT-AAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGT
* * *
15771078 TTCCTTCGATAGCGATATCCAAAGTCATTTGCATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
** * * ** ** * *
15771113 TTCTTAATGGTGATATCTGAGTGGTAAAAATTGATTTGTATTTTCTT-GATGGTGATATTCAAAT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTT-TTCGATGGTGATATTCGAGT
* *
15771177 TTCCTTCGGTGGCAATATCCAAAGTCATTTGCATA
65 TTCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
* * * * ** *
15771212 TTCTCGGTGGTGATATTCGAATGTTAAAGCTTGATTTACATTTTTTTTATGATGATATTCGAGTT
1 TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
* * *
15771277 TCCTTCGGTGGTGATATTCGAAGTCATTTACATA
66 TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
15771311 TTCTCGATGGTGATAT
1 TTCTCGATGGTGATAT
15771327 TCAAGTTTCA
Statistics
Matches: 1273, Mismatches: 204, Indels: 40
0.84 0.13 0.03
Matches are distributed among these distances:
97 119 0.09
98 221 0.17
99 838 0.66
100 95 0.07
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (99 bp):
TTCTCGATGGTGATATCCGAGTGTTAAAGTTTGATTTACATTTTTTCGATGGTGATATTCGAGTT
TCCTTCGGTGGCGATATCCGAAGTCATTTGCATA
Found at i:15771325 original size:57 final size:57
Alignment explanation
Indices: 15771264--15771389 Score: 146
Period size: 57 Copynumber: 2.2 Consensus size: 57
15771254 TTTTTTATGA
* ** * * * *
15771264 TGATATTCGAGTTTCCTTCGGTGGTGATATTCGAAGTCATTTACATATTCTC-GATGG
1 TGATATTCGAGTTTCATTCAATGGCGATATCCAAAGTCATTTACATATCCTCAG-TGG
* *
15771321 TGATATTCAAGTTTCATTCAATGGCGATATCCAAAGTCATTTGCATATCCTCAGTGG
1 TGATATTCGAGTTTCATTCAATGGCGATATCCAAAGTCATTTACATATCCTCAGTGG
*
15771378 TGATATCCGAGT
1 TGATATTCGAGT
15771390 GTTAAGGTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
57 56 0.98
58 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (57 bp):
TGATATTCGAGTTTCATTCAATGGCGATATCCAAAGTCATTTACATATCCTCAGTGG
Found at i:15771378 original size:156 final size:156
Alignment explanation
Indices: 15771155--15771488 Score: 443
Period size: 156 Copynumber: 2.1 Consensus size: 156
15771145 GATTTGTATT
* * * ** * *
15771155 TTCTTGATGGTGATATTCAAATTTCCTTCGGTGGCAATATCCAAAGTCATTTGCATATTCTCGGT
1 TTCTCGATGGTGATATTCAAGTTTCATTCAATGGCAATATCCAAAGTCATTTGCATATCCTCAGT
* ** *
15771220 GGTGATATTCGAATGTTAAAGCTTGATTTACATTTTTTTTATGATGATATTCGAGTTTCCTTCGG
66 GGTGATATCCGAATGTTAAAGCTTGATTTACATTTTTTCGATGACGATATTCGAGTTTCCTTCGG
* *
15771285 TGGTGATATTCGAAGTCATTTACATA
131 TGATGATATTCGAAATCATTTACATA
*
15771311 TTCTCGATGGTGATATTCAAGTTTCATTCAATGGCGATATCCAAAGTCATTTGCATATCCTCAGT
1 TTCTCGATGGTGATATTCAAGTTTCATTCAATGGCAATATCCAAAGTCATTTGCATATCCTCAGT
* * * ** * *
15771376 GGTGATATCCGAGTGTTAAGGTTTGATTTGTATTTTTTCGATGGCGATATTCGAGTTTTCTTCGG
66 GGTGATATCCGAATGTTAAAGCTTGATTTACATTTTTTCGATGACGATATTCGAGTTTCCTTCGG
*
15771441 TGATGATATTCGAAATCATTTGCATA
131 TGATGATATTCGAAATCATTTACATA
** *
15771467 TTCTCGATAATGATATCCAAGT
1 TTCTCGATGGTGATATTCAAGT
15771489 GATAAGGTTT
Statistics
Matches: 153, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
156 153 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.41
Consensus pattern (156 bp):
TTCTCGATGGTGATATTCAAGTTTCATTCAATGGCAATATCCAAAGTCATTTGCATATCCTCAGT
GGTGATATCCGAATGTTAAAGCTTGATTTACATTTTTTCGATGACGATATTCGAGTTTCCTTCGG
TGATGATATTCGAAATCATTTACATA
Found at i:15771381 original size:255 final size:255
Alignment explanation
Indices: 15771047--15771581 Score: 653
Period size: 255 Copynumber: 2.1 Consensus size: 255
15771037 TAAAAGTTTG
* * * * * *
15771047 ATTTACATTTTTTGGATGGTGATATTCGAGTTTCCTTCGATAGCGATATCCAAAGTCATTTGCAT
1 ATTTACATATTCTCGATGGTGATATTCAAGTTTCATTCAATAGCGATATCCAAAGTCATTTGCAT
* * * *
15771112 ATTCTTAATGGTGATATCTGAGTGGTAAAAATTGATTTGTATTTTCTT-GATGGTGATATTCAAA
66 ATCCTCAATGGTGATATCCGAGTGGTAAAAATTGATTTGTATTTT-TTCGATGGCGATATTCAAA
* * ** * *
15771176 TTTCCTTCGGTGGCAATA-TCCAAAGTCATTTGCATATTCTCGGTGGTGATATTCGAA-TGTTAA
130 TTTCCTTCGGTGACAATATTCCAAA-TCATTTGCATATTCTCGATAATGATA-TCCAAGTGATAA
* ** * *
15771239 AGCTTGATTTACATTTTTTTTATGATGATATTCGAGTTTCCTTCGGTGGTGATATTCGAAGTC
193 AGCTTGATTTACATTTTCTCGATGATGATATTCGAGTTTCCTTCGGTAGTGATATCCGAAGTC
*
15771302 ATTTACATATTCTCGATGGTGATATTCAAGTTTCATTCAATGGCGATATCCAAAGTCATTTGCAT
1 ATTTACATATTCTCGATGGTGATATTCAAGTTTCATTCAATAGCGATATCCAAAGTCATTTGCAT
* * *** * *
15771367 ATCCTCAGTGGTGATATCCGAGTGTTAAGGTTTGATTTGTATTTTTTCGATGGCGATATTCGAGT
66 ATCCTCAATGGTGATATCCGAGTGGTAAAAATTGATTTGTATTTTTTCGATGGCGATATTCAAAT
* ** * * *
15771432 TTTCTTCGGTGATGATATTCGAAATCATTTGCATATTCTCGATAATGATATCCAAGTGATAAGGT
131 TTCCTTCGGTGACAATATTCCAAATCATTTGCATATTCTCGATAATGATATCCAAGTGATAAAGC
** * *
15771497 TTGATTTGTATTTTCTCGATGGTGATATTCGAGTTTCTTTCGGTAGTGATATCCGAAGTC
196 TTGATTTACATTTTCTCGATGATGATATTCGAGTTTCCTTCGGTAGTGATATCCGAAGTC
**
15771557 ATTTGTATATTCTCGATGGTGATAT
1 ATTTACATATTCTCGATGGTGATAT
15771582 CTGAGTGATA
Statistics
Matches: 236, Mismatches: 41, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
254 6 0.03
255 225 0.95
256 5 0.02
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (255 bp):
ATTTACATATTCTCGATGGTGATATTCAAGTTTCATTCAATAGCGATATCCAAAGTCATTTGCAT
ATCCTCAATGGTGATATCCGAGTGGTAAAAATTGATTTGTATTTTTTCGATGGCGATATTCAAAT
TTCCTTCGGTGACAATATTCCAAATCATTTGCATATTCTCGATAATGATATCCAAGTGATAAAGC
TTGATTTACATTTTCTCGATGATGATATTCGAGTTTCCTTCGGTAGTGATATCCGAAGTC
Found at i:15771495 original size:99 final size:99
Alignment explanation
Indices: 15771302--15772064 Score: 832
Period size: 99 Copynumber: 7.7 Consensus size: 99
15771292 ATTCGAAGTC
* * * ** * *
15771302 ATTTACATATTCTCGATGGTGATATTCAAGTTTCATTCAATGGCGATATCCAAAGTCATTTGCAT
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
*
15771367 ATCCTC-AGTGGTGATATCCGAGTGTTAAGGTTTG
66 ATTCTCGA-TGGTGATATCCGAGTGTTAAGGTTTG
** * * * * * *
15771401 ATTTGTATTTTTTCGATGGCGATATTCGAGTTTTCTTCGGTGATGATATTCGAAATCATTTGCAT
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
** * *
15771466 ATTCTCGATAATGATATCCAAGTGATAAGGTTTG
66 ATTCTCGATGGTGATATCCGAGTGTTAAGGTTTG
** * * *
15771500 ATTTGTATTTTCTCGATGGTGATATTCGAGTTTCTTTCGGT-AGTGATATCCGAAGTCATTTGTA
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGA-CGATATCCGAAGTCATTTGCA
* * *
15771564 TATTCTCGATGGTGATATCTGAGTGATAAAGTTTG
65 TATTCTCGATGGTGATATCCGAGTGTTAAGGTTTG
* * *
15771599 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTTGATGTCGATATCCGAAGTCATTTGCAT
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
*
15771664 ATTCTCGATGGTGATATCCGAGTGATAAGGTTTG
66 ATTCTCGATGGTGATATCCGAGTGTTAAGGTTTG
* * * * * *
15771698 ATTTACATTTTCTTGATGGTGATATTCAAGTTTCCTTCAGTGGCAATATCCAAAGTCATTTGCAT
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
* * * * *
15771763 GTTCTC-AGTGGTGGTATCCTAGTGTTAAAGCTTG
66 ATTCTCGA-TGGTGATATCCGAGTGTTAAGGTTTG
* ** * * *
15771797 ATTTACATTTT-TTGATAATAATATTCGAGTTTCCTTAGGTGACAATATCCGAAGTCATTTGCAT
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
* * * * * * *
15771861 ATTTTCGGTGGTGATATTCGAGTTTTAAAGCTTC
66 ATTCTCGATGGTGATATCCGAGTGTTAAGGTTTG
* * * * * *
15771895 AATTGCACTTTCTCAATGGTGATATTCGAGTTTCTTTCGGTGGCGATATCCGAAGTCATTTGCAT
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
15771960 ATTCTCGATGGTGATATCCGAGTGTTAAGGTTTG
66 ATTCTCGATGGTGATATCCGAGTGTTAAGGTTTG
** ** *** *
15771994 ATTTACATTTTCTCGATGGTGATATTCGCTTTTCCTTCAATGGTAATATCTGAAGTCATTTGCAT
1 ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
*
15772059 CTTCTC
66 ATTCTC
15772065 TGTGGTAATG
Statistics
Matches: 554, Mismatches: 104, Indels: 12
0.83 0.16 0.02
Matches are distributed among these distances:
98 80 0.14
99 473 0.85
100 1 0.00
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (99 bp):
ATTTACATTTTCTCGATGGTGATATTCGAGTTTCCTTCGGTGACGATATCCGAAGTCATTTGCAT
ATTCTCGATGGTGATATCCGAGTGTTAAGGTTTG
Found at i:15771947 original size:296 final size:296
Alignment explanation
Indices: 15771311--15772070 Score: 904
Period size: 296 Copynumber: 2.6 Consensus size: 296
15771301 CATTTACATA
* * * * *
15771311 TTCTCGATGGTGATATTCAAGTTTCATTCAATGGCGATATCCAAAGTCATTTGCATATCCTC-AG
1 TTCTCGATGGTGATATTCGAGTTTCTTTCGATGGCGATATCCGAAGTCATTTGCATATTCTCGA-
** * *
15771375 TGGTGATATCCGAGTGTTAAGGTTTGATTTGTATTTT-TTCGATGGCGATATTCGAGTTTTCTTC
65 TGGTGATATCCGAGTGTTAAGGTTTGATTTACATTTTCTT-GATGGTGATATTCGAGTTTCCTTC
* * * * ** * *
15771439 GGTGATGATATTCGAAA-TCATTTGCATATTCTCGATAATGATATCCAAGTGATAAGGTTTGATT
129 AGTGGTAATA-TCCAAAGTCATTTGCATATTCTCG-TGGTGATATCCAAGTGATAAAGCTTGATT
** ** * * * ** *
15771503 TGTATTTTCTCGATGGTGATATTCGAGTTTCTTTCGGTAGTGATATCCGAAGTCATTTGTATATT
192 TACATTTTCTCGATAATAATATTCGAGTTTCCTTAGGTAGCAATATCCGAAGTCATTTGCATATT
* * * *
15771568 CTCGATGGTGATATCTGAGTGATAAAGTTTGATTTACATT
257 CTCGATGGTGATATCTGAGTGATAAAGCTTCAATTACACT
*
15771608 TTCTCGATGGTGATATTCGAGTTTCCTTT-GATGTCGATATCCGAAGTCATTTGCATATTCTCGA
1 TTCTCGATGGTGATATTCGAGTTT-CTTTCGATGGCGATATCCGAAGTCATTTGCATATTCTCGA
* *
15771672 TGGTGATATCCGAGTGATAAGGTTTGATTTACATTTTCTTGATGGTGATATTCAAGTTTCCTTCA
65 TGGTGATATCCGAGTGTTAAGGTTTGATTTACATTTTCTTGATGGTGATATTCGAGTTTCCTTCA
* * * * *
15771737 GTGGCAATATCCAAAGTCATTTGCATGTTCTCAGTGGTGGTATCCTAGTGTTAAAGCTTGATTTA
130 GTGGTAATATCCAAAGTCATTTGCATATTCTC-GTGGTGATATCCAAGTGATAAAGCTTGATTTA
* *
15771802 CATTTT-TTGATAATAATATTCGAGTTTCCTTAGGT-GACAATATCCGAAGTCATTTGCATATTT
194 CATTTTCTCGATAATAATATTCGAGTTTCCTTAGGTAG-CAATATCCGAAGTCATTTGCATATTC
* ** *
15771865 TCGGTGGTGATAT-TCGAGTTTTAAAGCTTCAATTGCACT
258 TCGATGGTGATATCT-GAGTGATAAAGCTTCAATTACACT
* *
15771904 TTCTCAATGGTGATATTCGAGTTTCTTTCGGTGGCGATATCCGAAGTCATTTGCATATTCTCGAT
1 TTCTCGATGGTGATATTCGAGTTTCTTTCGATGGCGATATCCGAAGTCATTTGCATATTCTCGAT
* ** *
15771969 GGTGATATCCGAGTGTTAAGGTTTGATTTACATTTTCTCGATGGTGATATTCGCTTTTCCTTCAA
66 GGTGATATCCGAGTGTTAAGGTTTGATTTACATTTTCTTGATGGTGATATTCGAGTTTCCTTCAG
** *
15772034 TGGTAATATCTGAAGTCATTTGCATCTTCTCTGTGGT
131 TGGTAATATCCAAAGTCATTTGCATATTCTC-GTGGT
15772071 AATGTTTGAG
Statistics
Matches: 396, Mismatches: 59, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
295 6 0.02
296 227 0.57
297 156 0.39
298 7 0.02
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (296 bp):
TTCTCGATGGTGATATTCGAGTTTCTTTCGATGGCGATATCCGAAGTCATTTGCATATTCTCGAT
GGTGATATCCGAGTGTTAAGGTTTGATTTACATTTTCTTGATGGTGATATTCGAGTTTCCTTCAG
TGGTAATATCCAAAGTCATTTGCATATTCTCGTGGTGATATCCAAGTGATAAAGCTTGATTTACA
TTTTCTCGATAATAATATTCGAGTTTCCTTAGGTAGCAATATCCGAAGTCATTTGCATATTCTCG
ATGGTGATATCTGAGTGATAAAGCTTCAATTACACT
Found at i:15771995 original size:395 final size:396
Alignment explanation
Indices: 15771300--15772135 Score: 1057
Period size: 395 Copynumber: 2.1 Consensus size: 396
15771290 ATATTCGAAG
* * * * *
15771300 TCATTTACATATTCTCGATGGTGATATTCAAGTTTCATTCAATGGCGATATCCAAAGTCATTTGC
1 TCATTTACATTTTCTTGATGGTGATATTCAAGTTTCCTTCAGTGGCAATATCCAAAGTCATTTGC
* * ** ** *
15771365 ATATCCTCAGTGGTGATATCCGAGTGTTAAGGTTTGATTTGTATTTTTTCGATGGCGATATTCGA
66 ATATCCTCAGTGGTGATATCCGAGTGTTAAAGCTTGATTTACATTTTTTCGATAACAATATTCGA
* * ** * *
15771430 GTTTTCTTCGGTGATGATATTCGAAATCATTTGCATATTCTCGATAATGATATCCAAGTGATAAG
131 GTTTCCTTAGGTGACAATATCCGAAATCATTTGCATATTCTCGATAATGATATCCAAGTGATAAA
* * * * * * *
15771495 GTTTGATTTGTATTTTCTCGATGGTGATATTCGAGTTTCTTTCGGTAGTGATATCCGAAGTCATT
196 GCTTCAATTGCACTTTCTCAATGGTGATATTCGAGTTTCTTTCGGTAGCGATATCCGAAGTCATT
* *
15771560 TGTATATTCTCGATGGTGATATCTGAGTGATAAAGTTTGATTTACATTTTCTCGATGGTGATATT
261 TGCATATTCTCGATGGTGATATCCGAGTGATAAAGTTTGATTTACATTTTCTCGATGGTGATATT
** * *
15771625 CGAGTTTCCTTTGAT-GTCGATATCCGAAGTCATTTGCATATTCTC-GATGGTGATATCCGAGTG
326 CGAGTTTCCTTCAATGGT-AATATCCGAAGTCATTTGCATATTCTCTG-TGGTAATATCCGAGTG
****
15771688 ATAAGGTT
389 ATAAAAAA
*
15771696 TGATTTACATTTTCTTGATGGTGATATTCAAGTTTCCTTCAGTGGCAATATCCAAAGTCATTTGC
1 TCATTTACATTTTCTTGATGGTGATATTCAAGTTTCCTTCAGTGGCAATATCCAAAGTCATTTGC
* * * * *
15771761 ATGTTCTCAGTGGTGGTATCCTAGTGTTAAAGCTTGATTTACATTTTTT-GATAATAATATTCGA
66 ATATCCTCAGTGGTGATATCCGAGTGTTAAAGCTTGATTTACATTTTTTCGATAACAATATTCGA
* * * ** * * **
15771825 GTTTCCTTAGGTGACAATATCCGAAGTCATTTGCATATTTTCGGTGGTGATATTCGAGTTTTAAA
131 GTTTCCTTAGGTGACAATATCCGAAATCATTTGCATATTCTCGATAATGATATCCAAGTGATAAA
*
15771890 GCTTCAATTGCACTTTCTCAATGGTGATATTCGAGTTTCTTTCGGTGGCGATATCCGAAGTCATT
196 GCTTCAATTGCACTTTCTCAATGGTGATATTCGAGTTTCTTTCGGTAGCGATATCCGAAGTCATT
* *
15771955 TGCATATTCTCGATGGTGATATCCGAGTGTTAAGGTTTGATTTACATTTTCTCGATGGTGATATT
261 TGCATATTCTCGATGGTGATATCCGAGTGATAAAGTTTGATTTACATTTTCTCGATGGTGATATT
** * * * ** *
15772020 CGCTTTTCCTTCAATGGTAATATCTGAAGTCATTTGCATCTTCTCTGTGGTAATGTTTGAGTGTT
326 CGAGTTTCCTTCAATGGTAATATCCGAAGTCATTTGCATATTCTCTGTGGTAATATCCGAGTGAT
15772085 AAAAAA
391 AAAAAA
* * *
15772091 TCATTTGCATTTTTTTTATGGTGATATTCAAGTTTCCTTCAGTGG
1 TCATTTACATTTTCTTGATGGTGATATTCAAGTTTCCTTCAGTGG
15772136 TGAGATCTGA
Statistics
Matches: 373, Mismatches: 65, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
395 270 0.72
396 103 0.28
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (396 bp):
TCATTTACATTTTCTTGATGGTGATATTCAAGTTTCCTTCAGTGGCAATATCCAAAGTCATTTGC
ATATCCTCAGTGGTGATATCCGAGTGTTAAAGCTTGATTTACATTTTTTCGATAACAATATTCGA
GTTTCCTTAGGTGACAATATCCGAAATCATTTGCATATTCTCGATAATGATATCCAAGTGATAAA
GCTTCAATTGCACTTTCTCAATGGTGATATTCGAGTTTCTTTCGGTAGCGATATCCGAAGTCATT
TGCATATTCTCGATGGTGATATCCGAGTGATAAAGTTTGATTTACATTTTCTCGATGGTGATATT
CGAGTTTCCTTCAATGGTAATATCCGAAGTCATTTGCATATTCTCTGTGGTAATATCCGAGTGAT
AAAAAA
Found at i:15778575 original size:2 final size:2
Alignment explanation
Indices: 15778555--15778592 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
15778545 ATTTTGTATG
* *
15778555 TA TA T- TA TT TA TT TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15778593 TACAACTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (2 bp):
TA
Found at i:15778705 original size:19 final size:17
Alignment explanation
Indices: 15778681--15778717 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
15778671 ATTTTATTTA
15778681 TTTTAAATATATTATATAT
1 TTTTAAA-ATATTAT-TAT
15778700 TTTTAAAATATTATTAT
1 TTTTAAAATATTATTAT
15778717 T
1 T
15778718 CTTATTCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 7 0.39
19 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTAAAATATTATTAT
Found at i:15780359 original size:2 final size:2
Alignment explanation
Indices: 15780352--15780379 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15780342 CCTCCCCCTT
15780352 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15780380 GTGGAGTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15781052 original size:18 final size:19
Alignment explanation
Indices: 15781017--15781056 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
15781007 GTTAAAACTT
15781017 AAAAGTAATTTTTATATTC
1 AAAAGTAATTTTTATATTC
*
15781036 AAAAGTTATTTTT-TATTC
1 AAAAGTAATTTTTATATTC
15781054 AAA
1 AAA
15781057 TACAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
AAAAGTAATTTTTATATTC
Found at i:15783534 original size:24 final size:23
Alignment explanation
Indices: 15783501--15783546 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
15783491 TATGTAAACT
*
15783501 ATAAATAATATAATTAAAATATC
1 ATAAATAATAAAATTAAAATATC
15783524 ATAACATAATAAAATTAAAATAT
1 ATAA-ATAATAAAATTAAAATAT
15783547 TTTATTAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (23 bp):
ATAAATAATAAAATTAAAATATC
Found at i:15785281 original size:2 final size:2
Alignment explanation
Indices: 15785274--15785303 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15785264 TTATCAAACT
15785274 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15785304 CATACGTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15788177 original size:19 final size:19
Alignment explanation
Indices: 15788153--15788189 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15788143 CTCTTATCAA
15788153 TTTAAATAAATTTAAATAT
1 TTTAAATAAATTTAAATAT
* *
15788172 TTTAAATAGATTTGAATA
1 TTTAAATAAATTTAAATA
15788190 ATATTAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (19 bp):
TTTAAATAAATTTAAATAT
Found at i:15788432 original size:12 final size:13
Alignment explanation
Indices: 15788399--15788436 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
15788389 CAAATTTATA
15788399 TATATATATATATAT
1 TATA-ATATA-ATAT
15788414 TATAATATAATAT
1 TATAATATAATAT
15788427 TA-AATATAAT
1 TATAATATAAT
15788437 TACTAGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 8 0.35
13 6 0.26
14 5 0.22
15 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TATAATATAATAT
Found at i:15795606 original size:20 final size:20
Alignment explanation
Indices: 15795581--15795618 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15795571 GAGAAAGGGA
15795581 AAAGAAAAGGAAA-GAAACGT
1 AAAGAAAA-GAAAGGAAACGT
15795601 AAAGAAAAGAAAGGAAAC
1 AAAGAAAAGAAAGGAAAC
15795619 AGAAAACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.68, C:0.05, G:0.24, T:0.03
Consensus pattern (20 bp):
AAAGAAAAGAAAGGAAACGT
Found at i:15796464 original size:2 final size:2
Alignment explanation
Indices: 15796457--15796483 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15796447 ATTATTTTTC
15796457 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
15796484 AAATCAAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15800816 original size:14 final size:14
Alignment explanation
Indices: 15800790--15800833 Score: 61
Period size: 15 Copynumber: 3.0 Consensus size: 14
15800780 GTTTGAATTC
15800790 GTTTAAGATTTATTT
1 GTTTAA-ATTTATTT
15800805 GTTTAAATTTATTT
1 GTTTAAATTTATTT
*
15800819 GATTATAATTTATTT
1 GTTTA-AATTTATTT
15800834 ATTATTCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 12 0.44
15 15 0.56
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (14 bp):
GTTTAAATTTATTT
Found at i:15800837 original size:14 final size:15
Alignment explanation
Indices: 15800797--15800838 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
15800787 TTCGTTTAAG
*
15800797 ATTTATTTGTT-TAA
1 ATTTATTTATTATAA
15800811 ATTTATTTGATTAT-A
1 ATTTATTT-ATTATAA
15800826 ATTTATTTATTAT
1 ATTTATTTATTAT
15800839 TCATAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 13 0.52
15 11 0.44
16 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (15 bp):
ATTTATTTATTATAA
Found at i:15808149 original size:18 final size:18
Alignment explanation
Indices: 15808128--15808182 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
15808118 CTTATGGAAA
15808128 TTAATTCATTTGGTTCAG
1 TTAATTCATTTGGTTCAG
*
15808146 TTAA-T-ATTT--TT-GG
1 TTAATTCATTTGGTTCAG
*
15808159 TAAATTCATTTGGTTCAG
1 TTAATTCATTTGGTTCAG
15808177 TTAATT
1 TTAATT
15808183 TTTTTGATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 10
0.67 0.10 0.24
Matches are distributed among these distances:
13 4 0.14
14 3 0.11
15 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.25, C:0.07, G:0.15, T:0.53
Consensus pattern (18 bp):
TTAATTCATTTGGTTCAG
Found at i:15808168 original size:31 final size:31
Alignment explanation
Indices: 15808130--15808188 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
15808120 TATGGAAATT
15808130 AATTCATTTGGTTCAGTTAATATTTTTGGTA
1 AATTCATTTGGTTCAGTTAATATTTTTGGTA
*
15808161 AATTCATTTGGTTCAGTTAATTTTTTTG
1 AATTCATTTGGTTCAGTTAATATTTTTG
15808189 ATTAACCGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.07, G:0.15, T:0.54
Consensus pattern (31 bp):
AATTCATTTGGTTCAGTTAATATTTTTGGTA
Found at i:15818839 original size:22 final size:22
Alignment explanation
Indices: 15818804--15818845 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15818794 TTGTCTATCC
* *
15818804 TAATTTTAGGGATACAAATACT
1 TAATTCTAGAGATACAAATACT
15818826 TAATTCTAGAGATACAAATA
1 TAATTCTAGAGATACAAATA
15818846 TAAATATACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACT
Found at i:15822781 original size:22 final size:22
Alignment explanation
Indices: 15822753--15822794 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
15822743 TTGTCTATCC
*
15822753 TAATTTTAGGGATACAAATACT
1 TAATTTTAGAGATACAAATACT
*
15822775 TAATTTTAGAGATGCAAATA
1 TAATTTTAGAGATACAAATA
15822795 TAAATATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (22 bp):
TAATTTTAGAGATACAAATACT
Found at i:15826099 original size:62 final size:62
Alignment explanation
Indices: 15825983--15826099 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 62
15825973 AAAATAATAA
* * ** *
15825983 AGAATTATTCAAGGTATTTTTGACTAAAAACGTTTTAAATAATCTCTTACAAAAAATTGAAT
1 AGAATTATTAAAAGTATTTTTGACTAAAAACGCATTAAATAATCTCTCACAAAAAATTGAAT
* * *
15826045 AGAATTATTAAAAGTGTTTTTGA-TCAAAAACGCATTCAATAATCTCTCATAAAAA
1 AGAATTATTAAAAGTATTTTTGACT-AAAAACGCATTAAATAATCTCTCACAAAAA
15826100 TTTTTAAGGA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
61 1 0.02
62 45 0.98
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.35
Consensus pattern (62 bp):
AGAATTATTAAAAGTATTTTTGACTAAAAACGCATTAAATAATCTCTCACAAAAAATTGAAT
Found at i:15826958 original size:11 final size:11
Alignment explanation
Indices: 15826941--15826976 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
15826931 AAATCTCATA
15826941 AGAGATTTGTT
1 AGAGATTTGTT
*
15826952 TGAGATTTGTT
1 AGAGATTTGTT
*
15826963 AAAGATTTGTT
1 AGAGATTTGTT
15826974 AGA
1 AGA
15826977 TATTGCTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (11 bp):
AGAGATTTGTT
Found at i:15827063 original size:52 final size:52
Alignment explanation
Indices: 15826997--15827152 Score: 201
Period size: 52 Copynumber: 3.0 Consensus size: 52
15826987 TAGACAAGAA
* * *
15826997 GACTTACAAAAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTATAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
*
15827049 GACTTGTAAGAGAAGAATTCTGAA-AGGAAA-AGGATTCTTAATAGGCAAGTTT
1 GACTTATAAGAGAAGAATTCT-AAGA-GAAAGAGGATTCTTAATAGGCAAGTTT
* * *
15827101 GACTTATAGGAGAAGAATTCTAAGAG-GAGAGAGATTCTTAATGGGCAAGTTT
1 GACTTATAAGAGAAGAATTCTAAGAGAAAGAG-GATTCTTAATAGGCAAGTTT
15827153 ATATGATTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
50 1 0.01
51 5 0.05
52 79 0.87
53 6 0.07
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (52 bp):
GACTTATAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
Found at i:15827754 original size:25 final size:25
Alignment explanation
Indices: 15827726--15827807 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 25
15827716 TTGAAAATTC
*
15827726 AAGATATGAAAAAAGCTGAAGGTTT
1 AAGATATGAAAAGAGCTGAAGGTTT
* * *
15827751 AAGATGTG-AAAGAGCTGAAAGTTC
1 AAGATATGAAAAGAGCTGAAGGTTT
* * * *
15827775 GAGATGTGAGAAGAGCTAAAGGTTT
1 AAGATATGAAAAGAGCTGAAGGTTT
15827800 AAG-TATGA
1 AAGATATGA
15827808 GAAGTGCATG
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
24 24 0.53
25 21 0.47
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.23
Consensus pattern (25 bp):
AAGATATGAAAAGAGCTGAAGGTTT
Found at i:15827797 original size:49 final size:50
Alignment explanation
Indices: 15827706--15827811 Score: 126
Period size: 49 Copynumber: 2.2 Consensus size: 50
15827696 GGTTCGAAAC
* *
15827706 GTGAGAAGAGTTGAAAATTCAAGATATGAAAAAAGCTGAAGGTTTAAGAT
1 GTGAGAAGAGCTGAAAATTCAAGATATGAAAAAAGCTAAAGGTTTAAGAT
* * * * *
15827756 GTGA-AAGAGCTGAAAGTTCGAGATGTGAGAAGAGCTAAAGGTTTAAG-T
1 GTGAGAAGAGCTGAAAATTCAAGATATGAAAAAAGCTAAAGGTTTAAGAT
*
15827804 ATGAGAAG
1 GTGAGAAG
15827812 TGCATGGTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
48 4 0.09
49 39 0.83
50 4 0.09
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (50 bp):
GTGAGAAGAGCTGAAAATTCAAGATATGAAAAAAGCTAAAGGTTTAAGAT
Found at i:15828067 original size:11 final size:11
Alignment explanation
Indices: 15828050--15828085 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
15828040 AAATCCCATA
15828050 AGAGATTTGTT
1 AGAGATTTGTT
*
15828061 TGAGATTTGTT
1 AGAGATTTGTT
*
15828072 AAAGATTTGTT
1 AGAGATTTGTT
15828083 AGA
1 AGA
15828086 TATTGCTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (11 bp):
AGAGATTTGTT
Found at i:15828172 original size:52 final size:52
Alignment explanation
Indices: 15828106--15828261 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
15828096 TAGACAAGAA
* * *
15828106 GACTTACAAAAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTATAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
*
15828158 GACTTGTAAGAGAAGAATTCTGAA-AGGAAA-AGGATTCTTAATAGGCAAGTTT
1 GACTTATAAGAGAAGAATTCT-AAGA-GAAAGAGGATTCTTAATAGGCAAGTTT
* * * *
15828210 GACTTATAGGAGAAGAATTCTAAGAG-GAGAGAGATTTTTAATGGGCAAGTTT
1 GACTTATAAGAGAAGAATTCTAAGAGAAAGAG-GATTCTTAATAGGCAAGTTT
15828262 ATATTATTAT
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
50 1 0.01
51 5 0.06
52 78 0.87
53 6 0.07
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (52 bp):
GACTTATAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
Found at i:15828862 original size:25 final size:25
Alignment explanation
Indices: 15828834--15828915 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 25
15828824 TTGAAAATTC
*
15828834 AAGATATGAAAAAAGCTGAAGGTTT
1 AAGATATGAAAAGAGCTGAAGGTTT
* * *
15828859 AAGATGTG-AAAGAGCTGAAAGTTC
1 AAGATATGAAAAGAGCTGAAGGTTT
* * * *
15828883 GAGATGTGAGAAGAGCTAAAGGTTT
1 AAGATATGAAAAGAGCTGAAGGTTT
15828908 AAG-TATGA
1 AAGATATGA
15828916 GAAGTGCATG
Statistics
Matches: 45, Mismatches: 11, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
24 24 0.53
25 21 0.47
ACGTcount: A:0.43, C:0.05, G:0.29, T:0.23
Consensus pattern (25 bp):
AAGATATGAAAAGAGCTGAAGGTTT
Found at i:15828905 original size:49 final size:50
Alignment explanation
Indices: 15828814--15828919 Score: 126
Period size: 49 Copynumber: 2.2 Consensus size: 50
15828804 GGTTCGAAAC
* *
15828814 GTGAGAAGAGTTGAAAATTCAAGATATGAAAAAAGCTGAAGGTTTAAGAT
1 GTGAGAAGAGCTGAAAATTCAAGATATGAAAAAAGCTAAAGGTTTAAGAT
* * * * *
15828864 GTGA-AAGAGCTGAAAGTTCGAGATGTGAGAAGAGCTAAAGGTTTAAG-T
1 GTGAGAAGAGCTGAAAATTCAAGATATGAAAAAAGCTAAAGGTTTAAGAT
*
15828912 ATGAGAAG
1 GTGAGAAG
15828920 TGCATGGTTT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
48 4 0.09
49 39 0.83
50 4 0.09
ACGTcount: A:0.42, C:0.05, G:0.30, T:0.23
Consensus pattern (50 bp):
GTGAGAAGAGCTGAAAATTCAAGATATGAAAAAAGCTAAAGGTTTAAGAT
Found at i:15829175 original size:11 final size:11
Alignment explanation
Indices: 15829158--15829193 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
15829148 AAATCCCATA
15829158 AGAGATTTGTT
1 AGAGATTTGTT
*
15829169 TGAGATTTGTT
1 AGAGATTTGTT
*
15829180 AAAGATTTGTT
1 AGAGATTTGTT
15829191 AGA
1 AGA
15829194 TATTGCTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (11 bp):
AGAGATTTGTT
Found at i:15829280 original size:52 final size:52
Alignment explanation
Indices: 15829214--15829369 Score: 201
Period size: 52 Copynumber: 3.0 Consensus size: 52
15829204 TAGACAAGAA
* * *
15829214 GACTTACAAAAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTATAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
*
15829266 GACTTGTAAGAGAAGAATTCTGAA-AGGAAA-AGGATTCTTAATAGGCAAGTTT
1 GACTTATAAGAGAAGAATTCT-AAGA-GAAAGAGGATTCTTAATAGGCAAGTTT
* * *
15829318 GACTTATAGGAGAAGAATTCTAAGAG-GAGAGAGATTCTTAATGGGCAAGTTT
1 GACTTATAAGAGAAGAATTCTAAGAGAAAGAG-GATTCTTAATAGGCAAGTTT
15829370 ATATGATTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
50 1 0.01
51 5 0.05
52 79 0.87
53 6 0.07
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (52 bp):
GACTTATAAGAGAAGAATTCTAAGAGAAAGAGGATTCTTAATAGGCAAGTTT
Found at i:15830596 original size:53 final size:53
Alignment explanation
Indices: 15830534--15830644 Score: 177
Period size: 53 Copynumber: 2.1 Consensus size: 53
15830524 TTGATAATAT
*
15830534 TTCATAAGATTAGAGGAGATTAAGAGGATCTTATGAATATTAATCGTTGAATG
1 TTCATAAGATTAGAAGAGATTAAGAGGATCTTATGAATATTAATCGTTGAATG
* * * *
15830587 TTCATAAGATTATAAGAGATTAAGAGGATCTTATGAATATTGATTGTTGAGTG
1 TTCATAAGATTAGAAGAGATTAAGAGGATCTTATGAATATTAATCGTTGAATG
15830640 TTCAT
1 TTCAT
15830645 TGATATGAAC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (53 bp):
TTCATAAGATTAGAAGAGATTAAGAGGATCTTATGAATATTAATCGTTGAATG
Found at i:15835071 original size:16 final size:14
Alignment explanation
Indices: 15835050--15835096 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
15835040 CTCAGTTTGT
15835050 TATTAATAGTATATAA
1 TATTAATA-TA-ATAA
15835066 TATTAATATAATAA
1 TATTAATATAATAA
*
15835080 TATTCAT-TAAT-A
1 TATTAATATAATAA
15835092 TATTA
1 TATTA
15835097 TAATATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 5 0.17
13 4 0.14
14 10 0.34
15 2 0.07
16 8 0.28
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (14 bp):
TATTAATATAATAA
Found at i:15835090 original size:18 final size:19
Alignment explanation
Indices: 15835067--15835103 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
15835057 AGTATATAAT
15835067 ATTAATATA-ATAATATTC
1 ATTAATATATATAATATTC
15835085 ATTAATATATTATAATATT
1 ATTAATATA-TATAATATT
15835104 ATTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTAATATATATAATATTC
Found at i:15835106 original size:23 final size:24
Alignment explanation
Indices: 15835063--15835120 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
15835053 TAATAGTATA
*
15835063 TAATATTAATATAATAATATTCAT
1 TAATATTATTATAATAATATTCAT
* *
15835087 TAATA-TATTATAATATTATTTAT
1 TAATATTATTATAATAATATTCAT
15835110 TAA-ATTATTAT
1 TAATATTATTAT
15835121 TTTTAATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.03
23 24 0.80
24 5 0.17
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
TAATATTATTATAATAATATTCAT
Found at i:15835116 original size:20 final size:20
Alignment explanation
Indices: 15835066--15835117 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
15835056 TAGTATATAA
*
15835066 TATTAATATAATAATATTCAT
1 TATTAA-ATTATAATATTCAT
* *
15835087 TAATATATTATAATATT-ATT
1 TATTAAATTATAATATTCA-T
15835107 TATTAAATTAT
1 TATTAAATTAT
15835118 TATTTTTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 20 0.80
21 4 0.16
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TATTAAATTATAATATTCAT
Found at i:15835215 original size:15 final size:16
Alignment explanation
Indices: 15835165--15835230 Score: 62
Period size: 16 Copynumber: 4.2 Consensus size: 16
15835155 TAGATTAATG
* *
15835165 ATATATTATTAATATA
1 ATATAATATTTATATA
* * *
15835181 ATATTATTTTTGTATA
1 ATATAATATTTATATA
**
15835197 ATATTTTATTTAT-TA
1 ATATAATATTTATATA
15835212 ATATAATATTTATATA
1 ATATAATATTTATATA
15835228 ATA
1 ATA
15835231 AAACTATTAT
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
15 13 0.33
16 26 0.67
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
ATATAATATTTATATA
Found at i:15841590 original size:12 final size:12
Alignment explanation
Indices: 15841573--15841597 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15841563 TTATATTTTA
15841573 TAAGTGATGACG
1 TAAGTGATGACG
15841585 TAAGTGATGACG
1 TAAGTGATGACG
15841597 T
1 T
15841598 GCTTAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (12 bp):
TAAGTGATGACG
Found at i:15842380 original size:19 final size:20
Alignment explanation
Indices: 15842335--15842382 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
15842325 AAAATATTTT
15842335 ATTAATTAAAATAATAAAAA
1 ATTAATTAAAATAATAAAAA
*
15842355 AAT-ATTAAAAT-ATAAAAA
1 ATTAATTAAAATAATAAAAA
*
15842373 TTTAATTAAA
1 ATTAATTAAA
15842383 CTTACAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 8 0.33
19 14 0.58
20 2 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTAATTAAAATAATAAAAA
Found at i:15842437 original size:38 final size:39
Alignment explanation
Indices: 15842362--15842439 Score: 108
Period size: 38 Copynumber: 2.0 Consensus size: 39
15842352 AAAAATATTA
15842362 AAATATAAAAATTTAATTAAACTTACAAATTATTCAAATT
1 AAATATAAAAATTTAATTAAACTTA-AAATTATTCAAATT
15842402 AAATATAAAAATATTTAA-TAAA-TT-AAATTATTCAAATT
1 AAATAT-AAAA-ATTTAATTAAACTTAAAATTATTCAAATT
15842440 TAAACTTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
38 14 0.39
40 8 0.22
41 8 0.22
42 6 0.17
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (39 bp):
AAATATAAAAATTTAATTAAACTTAAAATTATTCAAATT
Found at i:15859420 original size:22 final size:22
Alignment explanation
Indices: 15859394--15859437 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
15859384 TATATATTTA
*
15859394 TATTTGTATCCCTAGAGTTAAG
1 TATTTGTATCCCTAGAATTAAG
15859416 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
15859438 GACAGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:15860255 original size:32 final size:32
Alignment explanation
Indices: 15860214--15860278 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
15860204 TAAGATATAT
15860214 AGGTATCATATACATAATTAGATAACAAGTAC
1 AGGTATCATATACATAATTAGATAACAAGTAC
15860246 AGGTATCATATACATAATTAGATAACAAGTAC
1 AGGTATCATATACATAATTAGATAACAAGTAC
15860278 A
1 A
15860279 TTCTACTTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (32 bp):
AGGTATCATATACATAATTAGATAACAAGTAC
Found at i:15871058 original size:15 final size:15
Alignment explanation
Indices: 15871038--15871068 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15871028 TATTAGTATA
15871038 TATATTTTAAAGTTT
1 TATATTTTAAAGTTT
15871053 TATATTTTAAAGTTT
1 TATATTTTAAAGTTT
15871068 T
1 T
15871069 CTTTTTGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (15 bp):
TATATTTTAAAGTTT
Found at i:15871513 original size:111 final size:111
Alignment explanation
Indices: 15871319--15871544 Score: 416
Period size: 111 Copynumber: 2.0 Consensus size: 111
15871309 TCGCTAAAAA
*
15871319 GGTGTTTCCTTTTTTCCCTGACCAAAGCAGTAAGTCTTCTCTTTTCACGCTTTTATCTTACACAA
1 GGTGTTTCCTTTTTTCCCTGACCAAAGCAGTAAGTCTTCTCTTTTCACGCTTTTATCTCACACAA
15871384 CCCAAAACCCAAAGCCACATTCTTCTCTTCTTTCTCAACCTTCATT
66 CCCAAAACCCAAAGCCACATTCTTCTCTTCTTTCTCAACCTTCATT
* *
15871430 GGTGTTTCCTTTTTTCCCTGACCGAAGCAGTGAGTCTTCTCTTTTCACGCTTTTATCTCACACAA
1 GGTGTTTCCTTTTTTCCCTGACCAAAGCAGTAAGTCTTCTCTTTTCACGCTTTTATCTCACACAA
*
15871495 CCCAAAACGCAAAGCCACATTCTTCTCTTCTTTCTCAACCTTCATT
66 CCCAAAACCCAAAGCCACATTCTTCTCTTCTTTCTCAACCTTCATT
15871541 GGTG
1 GGTG
15871545 GCTTTTTCAC
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 111 1.00
ACGTcount: A:0.21, C:0.31, G:0.11, T:0.37
Consensus pattern (111 bp):
GGTGTTTCCTTTTTTCCCTGACCAAAGCAGTAAGTCTTCTCTTTTCACGCTTTTATCTCACACAA
CCCAAAACCCAAAGCCACATTCTTCTCTTCTTTCTCAACCTTCATT
Found at i:15872701 original size:2 final size:2
Alignment explanation
Indices: 15872694--15872722 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15872684 TATGTGGATC
15872694 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15872723 GTTACTGTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15873152 original size:2 final size:2
Alignment explanation
Indices: 15873145--15873174 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15873135 TAAGTTAACC
15873145 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15873175 GTGTGTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15873179 original size:2 final size:2
Alignment explanation
Indices: 15873174--15873198 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15873164 TATATATATA
15873174 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
15873199 ATGGTGGTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:15878833 original size:27 final size:27
Alignment explanation
Indices: 15878721--15878833 Score: 78
Period size: 27 Copynumber: 4.3 Consensus size: 27
15878711 ATTCATTAAC
*
15878721 TTATCTAAAAGTATTAAATTTAAATAAT
1 TTAT-TAAAAATATTAAATTTAAATAAT
* * **
15878749 TTATTAAATAATTTTTAATTTTGAT-AT
1 TTATTAAA-AATATTAAATTTAAATAAT
* *
15878776 ATT-TT---GAT-TTGAATTTAAATAA-
1 -TTATTAAAAATATTAAATTTAAATAAT
15878798 TTATCTAAAAATATTAAATTTAAATAAT
1 TTAT-TAAAAATATTAAATTTAAATAAT
15878826 TTATTAAA
1 TTATTAAA
15878834 TATAATTATT
Statistics
Matches: 64, Mismatches: 11, Indels: 21
0.67 0.11 0.22
Matches are distributed among these distances:
21 2 0.03
22 10 0.16
23 4 0.06
26 2 0.03
27 25 0.39
28 21 0.33
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (27 bp):
TTATTAAAAATATTAAATTTAAATAAT
Found at i:15878992 original size:23 final size:24
Alignment explanation
Indices: 15878954--15879013 Score: 79
Period size: 23 Copynumber: 2.5 Consensus size: 24
15878944 TTTTTGATAT
*
15878954 ATTTCAAA-ATAATTAAAATATTTA
1 ATTTCAAATA-AATTAAAAAATTTA
*
15878978 ATTT-AAATAAATTAAAAAATTTT
1 ATTTCAAATAAATTAAAAAATTTA
15879001 ATTTCAAATAAAT
1 ATTTCAAATAAAT
15879014 ATTATTATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 19 0.59
24 13 0.41
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (24 bp):
ATTTCAAATAAATTAAAAAATTTA
Found at i:15878995 original size:24 final size:23
Alignment explanation
Indices: 15878954--15879013 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 23
15878944 TTTTTGATAT
15878954 ATTTCAAA-ATAATTAAAATATTTA
1 ATTTCAAATA-AATTAAAA-ATTTA
*
15878978 ATTT-AAATAAATTAAAAAATTTT
1 ATTTCAAATAAATT-AAAAATTTA
15879001 ATTTCAAATAAAT
1 ATTTCAAATAAAT
15879014 ATTATTATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 15 0.47
24 17 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (23 bp):
ATTTCAAATAAATTAAAAATTTA
Found at i:15879576 original size:38 final size:37
Alignment explanation
Indices: 15879475--15879583 Score: 103
Period size: 38 Copynumber: 2.9 Consensus size: 37
15879465 TTTATTCTAT
* * *
15879475 TTTTAATATCAAAAATCAAATTGC-AAAAGAAAATCTC
1 TTTTAATA-CAAAAATCAAATTCCAAAAAAAAAATATC
* * * *
15879512 TATTAATGCAAAAATTAAAATCCAAAAAAAAAAGTATC
1 TTTTAATACAAAAATCAAATTCCAAAAAAAAAA-TATC
* *
15879550 TTTTAATACCAAAATCAAATTTCAAAAAAGAAAA
1 TTTTAATACAAAAATCAAATTCCAAAAAA-AAAA
15879584 AAGAAAAAAG
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
36 12 0.21
37 14 0.25
38 26 0.46
39 4 0.07
ACGTcount: A:0.57, C:0.12, G:0.05, T:0.27
Consensus pattern (37 bp):
TTTTAATACAAAAATCAAATTCCAAAAAAAAAATATC
Found at i:15880560 original size:3 final size:3
Alignment explanation
Indices: 15880552--15880590 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
15880542 ATTTTTACAC
15880552 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
15880591 CTTGGTCGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15885676 original size:37 final size:37
Alignment explanation
Indices: 15885612--15885698 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 37
15885602 ATGATATGAT
*
15885612 TAGGAATGATGTATTAGCTCTACCATGACTAAGTATAG
1 TAGGAATGATGTAGTAGCTCTACCATGACTAAGTAT-G
* * * *
15885650 -ATGAATGATGTAGTGGCTCTGA-CATGATTAATTATG
1 TAGGAATGATGTAGTAGCTCT-ACCATGACTAAGTATG
15885686 TAGGAATGATGTA
1 TAGGAATGATGTA
15885699 ATATTTAATG
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
36 1 0.02
37 39 0.95
38 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (37 bp):
TAGGAATGATGTAGTAGCTCTACCATGACTAAGTATG
Found at i:15886146 original size:18 final size:19
Alignment explanation
Indices: 15886123--15886158 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15886113 TTGATCATCT
15886123 AAAGTT-AAAAAATTTTTA
1 AAAGTTCAAAAAATTTTTA
*
15886141 AAAGTTCAAAATATTTTT
1 AAAGTTCAAAAAATTTTT
15886159 GTATTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (19 bp):
AAAGTTCAAAAAATTTTTA
Found at i:15888327 original size:21 final size:21
Alignment explanation
Indices: 15888270--15888329 Score: 70
Period size: 20 Copynumber: 2.9 Consensus size: 21
15888260 TAAGAAAGTG
15888270 ATGTCATTTATTATCATAATAA
1 ATGTCATTTATTATCAT-ATAA
* *
15888292 ATGAT-GTTTA-CATCATATAA
1 ATG-TCATTTATTATCATATAA
15888312 ATGTCATTTATTATCATA
1 ATGTCATTTATTATCATA
15888330 CATATTTGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
19 1 0.03
20 11 0.35
21 11 0.35
22 7 0.23
23 1 0.03
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (21 bp):
ATGTCATTTATTATCATATAA
Found at i:15889800 original size:22 final size:22
Alignment explanation
Indices: 15889774--15889816 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15889764 ACTTAATACT
15889774 ACCTTAAGA-ATGTCTTGCAAAA
1 ACCTTAA-ACATGTCTTGCAAAA
*
15889796 ACCTTAAACATTTCTTGCAAA
1 ACCTTAAACATGTCTTGCAAA
15889817 GTTGAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (22 bp):
ACCTTAAACATGTCTTGCAAAA
Found at i:15919509 original size:231 final size:230
Alignment explanation
Indices: 15919142--15919577 Score: 500
Period size: 231 Copynumber: 1.9 Consensus size: 230
15919132 TTCTTCCAAG
* * * *
15919142 TGATCTAATGATTCAATCCTCTTCATTAAAGAAGCTGCCATTCACGTTCTTCAGCCAATTCAAAA
1 TGATCTAAAGACTCAATCCTCTTCATCAAAGAAGCTGCCATTCACGTTATTCAGCCAATTCAAAA
* * * ** **
15919207 TTTGCAGTTTCTAAAGCATCACAAACTTCTCTAAGTTACTCTCCAAATTCAATTTTTATATGCGC
66 TTTGCAGATTCTAAAGCATCAAAAACTTCTCAAAGTTACTCTCCAAATTCAATTTCCATATGCAA
* * * * * * *
15919272 AGCTTGCTCTTCTAACTCAT-TTTGACTCCTAGATGCTACTTCAAGCTTTTCCTTATACTTCTCA
131 AGCTTGCTCTTCCAACT-ATATTTGACACCTAGATGCTACCTCAACCCTTTCCTTACACCTCTCA
15919336 AGCTATTTCTGTGTCTGGAGCCACTGCTCTTTAATT
195 AGCTATTTCTGTGTCTGGAGCCACTGCTCTTTAATT
* * *
15919372 TGATCTAAAGACTCAA-CGCTCTTCATCAAAGAAGCTGTCC-TCTCTCGTTATTTAGTCAATTCA
1 TGATCTAAAGACTCAATC-CTCTTCATCAAAGAAGCTG-CCAT-TCACGTTATTCAGCCAATTCA
* * * * *** * *
15919435 GATTTTGCTGATTCTAAAGCATCAAAAACTTCTCAAAGTTTCTCTCTGGATTCACTTTCCATCTG
63 AAATTTGCAGATTCTAAAGCATCAAAAACTTCTCAAAGTTACTCTCCAAATTCAATTTCCATATG
* * * *
15919500 CAAAGCTTGCTCTTCCAAGTGTATTTGACACCTAGATGCTTCCTCAACCCTTTCTTTACACCTCT
128 CAAAGCTTGCTCTTCCAACTATATTTGACACCTAGATGCTACCTCAACCCTTTCCTTACACCTCT
*
15919565 CAAGCTCTTTCTG
193 CAAGCTATTTCTG
15919578 CATTAGGAGC
Statistics
Matches: 167, Mismatches: 35, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
229 1 0.01
230 34 0.20
231 132 0.79
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (230 bp):
TGATCTAAAGACTCAATCCTCTTCATCAAAGAAGCTGCCATTCACGTTATTCAGCCAATTCAAAA
TTTGCAGATTCTAAAGCATCAAAAACTTCTCAAAGTTACTCTCCAAATTCAATTTCCATATGCAA
AGCTTGCTCTTCCAACTATATTTGACACCTAGATGCTACCTCAACCCTTTCCTTACACCTCTCAA
GCTATTTCTGTGTCTGGAGCCACTGCTCTTTAATT
Found at i:15922567 original size:2 final size:2
Alignment explanation
Indices: 15922560--15922586 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15922550 AATTTCATGT
15922560 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
15922587 TAGTGGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15923401 original size:10 final size:10
Alignment explanation
Indices: 15923386--15923424 Score: 69
Period size: 10 Copynumber: 3.9 Consensus size: 10
15923376 GATTTTTTAG
15923386 TTCATGTGCA
1 TTCATGTGCA
15923396 TTCATGTGCA
1 TTCATGTGCA
*
15923406 TTCATGTGCG
1 TTCATGTGCA
15923416 TTCATGTGC
1 TTCATGTGC
15923425 TACTGTCTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.41
Consensus pattern (10 bp):
TTCATGTGCA
Found at i:15925344 original size:30 final size:30
Alignment explanation
Indices: 15925232--15925336 Score: 119
Period size: 30 Copynumber: 3.5 Consensus size: 30
15925222 TAATTGTATC
* *
15925232 ATATAAAATATTATATTTATGTTATATTTT
1 ATATAAAATATTATATTTATATCATATTTT
15925262 ATATAAAA-ATTAATAATATATACTATCATA--TT
1 ATATAAAATATT-AT-AT-T-TA-TATCATATTTT
15925294 ATATAAAATATTATATTTATATCATATTTT
1 ATATAAAATATTATATTTATATCATATTTT
15925324 ATATAAAA-ATTAT
1 ATATAAAATATTAT
15925337 GTGTTATAAT
Statistics
Matches: 65, Mismatches: 2, Indels: 17
0.77 0.02 0.20
Matches are distributed among these distances:
28 7 0.11
29 10 0.15
30 21 0.32
31 4 0.06
32 13 0.20
33 5 0.08
34 5 0.08
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.49
Consensus pattern (30 bp):
ATATAAAATATTATATTTATATCATATTTT
Found at i:15925364 original size:62 final size:60
Alignment explanation
Indices: 15925222--15925366 Score: 161
Period size: 62 Copynumber: 2.4 Consensus size: 60
15925212 TTACGATACG
* *
15925222 TAATT-GTATCATAT-AAAATATTATATTTATGTTATATTTTATATAAAAATTAATAATA
1 TAATTCGTATCATATAAAAATATTATATTTATATCATATTTTATATAAAAATTAATAATA
* * * **
15925280 TATACTATCATATTATAT-AAAATATTATATTTATATCATATTTTATATAAAAATTATGTGTTA
1 TA-A-T-TCGTATCATATAAAAATATTATATTTATATCATATTTTATATAAAAATTA-ATAATA
15925343 TAATTCGTATCGATATAAAAATAT
1 TAATTCGTATC-ATATAAAAATAT
15925367 AAAATATGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
58 2 0.03
59 1 0.01
60 6 0.08
61 6 0.08
62 51 0.72
63 5 0.07
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (60 bp):
TAATTCGTATCATATAAAAATATTATATTTATATCATATTTTATATAAAAATTAATAATA
Found at i:15925417 original size:9 final size:9
Alignment explanation
Indices: 15925375--15925417 Score: 52
Period size: 10 Copynumber: 4.6 Consensus size: 9
15925365 ATAAAATATG
15925375 ATTTTTT-A
1 ATTTTTTAA
15925383 ATTTTATTAA
1 ATTTT-TTAA
15925393 ATTTATTTATA
1 ATTT-TTTA-A
15925404 ATTTTTTAA
1 ATTTTTTAA
15925413 ATTTT
1 ATTTT
15925418 AAATCATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 5 0.16
9 8 0.26
10 12 0.39
11 6 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:15925433 original size:16 final size:17
Alignment explanation
Indices: 15925413--15925454 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
15925403 AATTTTTTAA
*
15925413 ATTTTAAATCATATTAT
1 ATTTTAAATCATATCAT
*
15925430 -TTTTATATCATATCAT
1 ATTTTAAATCATATCAT
15925446 ATTTTAAAT
1 ATTTTAAAT
15925455 TATCAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAAATCATATCAT
Found at i:15926014 original size:23 final size:23
Alignment explanation
Indices: 15925986--15926057 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
15925976 AAATATATAT
* * *
15925986 ATAAATGAATATATTTATAACTA
1 ATAAATAAATATATTCATAAATA
15926009 ATAAATAAATATATTCATAAATA
1 ATAAATAAATATATTCATAAATA
* *
15926032 ATAAACAAAT-TA-TAATAAATA
1 ATAAATAAATATATTCATAAATA
15926053 TATAA
1 -ATAA
15926058 TATGATTAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
21 8 0.19
22 6 0.14
23 29 0.67
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (23 bp):
ATAAATAAATATATTCATAAATA
Found at i:15927079 original size:20 final size:19
Alignment explanation
Indices: 15927056--15927098 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
15927046 ATAAATTTTG
15927056 AATTATAATAAAATATTTAA
1 AATTATAATAAAAT-TTTAA
* *
15927076 AATTATATTTAAATTTTAA
1 AATTATAATAAAATTTTAA
15927095 AATT
1 AATT
15927099 TTTTAATATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATTATAATAAAATTTTAA
Found at i:15927095 original size:19 final size:19
Alignment explanation
Indices: 15927047--15927098 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
15927037 ATGTTATGAA
*
15927047 TAAATTTT-GAATTATAAT
1 TAAATTTTAAAATTATAAT
* *
15927065 AAAATATTTAAAATTATATT
1 TAAAT-TTTAAAATTATAAT
15927085 TAAATTTTAAAATT
1 TAAATTTTAAAATT
15927099 TTTTAATATG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
20 12 0.43
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (19 bp):
TAAATTTTAAAATTATAAT
Found at i:15927845 original size:14 final size:13
Alignment explanation
Indices: 15927820--15927872 Score: 56
Period size: 14 Copynumber: 4.0 Consensus size: 13
15927810 TAATTATTTA
15927820 TTAAA-ATT-ATT
1 TTAAATATTAATT
15927831 TTAAATATATAATT
1 TTAAATAT-TAATT
*
15927845 TATAATTATTAATT
1 T-TAAATATTAATT
15927859 TTAAATTATTAATT
1 TTAAA-TATTAATT
15927873 ACGATATATC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
11 5 0.14
12 2 0.06
13 4 0.11
14 18 0.51
15 6 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAAATATTAATT
Found at i:15927956 original size:22 final size:23
Alignment explanation
Indices: 15927934--15927986 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
15927924 ATTTTTTATA
15927934 AAAAAAATT-A-TTTGAATGA-AT
1 AAAAAAATTAATTTTG-ATGAGAT
*
15927955 AATAAAATTAATTTTGATGAGATT
1 AAAAAAATTAATTTTGATGAGA-T
15927979 AAAAAAAT
1 AAAAAAAT
15927987 AATAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 8 0.31
22 5 0.19
23 5 0.19
24 8 0.31
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (23 bp):
AAAAAAATTAATTTTGATGAGAT
Found at i:15927984 original size:23 final size:22
Alignment explanation
Indices: 15927935--15927989 Score: 53
Period size: 23 Copynumber: 2.5 Consensus size: 22
15927925 TTTTTTATAA
15927935 AAAAAATT-A-TTTGAATGAAT
1 AAAAAATTAATTTTGAATGAAT
15927955 AATAAAATTAATTTTG-ATGAGATT
1 AA-AAAATTAATTTTGAATGA-A-T
*
15927979 AAAAAAATAAT
1 AAAAAATTAAT
15927990 AATAATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 2 0.07
21 6 0.21
22 5 0.17
23 13 0.45
24 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (22 bp):
AAAAAATTAATTTTGAATGAAT
Found at i:15929010 original size:10 final size:10
Alignment explanation
Indices: 15928995--15929031 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
15928985 TAGTAATATG
15928995 ATATAAAATA
1 ATATAAAATA
*
15929005 ATATAAATAAA
1 ATATAAA-ATA
15929016 ATATAAAATA
1 ATATAAAATA
15929026 ATATAA
1 ATATAA
15929032 TTTAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
ATATAAAATA
Found at i:15929019 original size:21 final size:21
Alignment explanation
Indices: 15928995--15929061 Score: 82
Period size: 21 Copynumber: 3.1 Consensus size: 21
15928985 TAGTAATATG
15928995 ATATAAAATAATATAAATAAA
1 ATATAAAATAATATAAATAAA
*
15929016 ATATAAAATAATATAATTTAAA
1 ATATAAAATAATATAA-ATAAA
*
15929038 ATTTTAAAA-AATTATAAATAAA
1 A-TATAAAATAA-TATAAATAAA
15929060 AT
1 AT
15929062 TAATAAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 17 0.43
22 12 0.30
23 11 0.28
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (21 bp):
ATATAAAATAATATAAATAAA
Found at i:15929053 original size:23 final size:22
Alignment explanation
Indices: 15928997--15929071 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
15928987 GTAATATGAT
15928997 ATAAAATAATATAAATAAAA-T-
1 ATAAAA-AATATAAATAAAATTA
*
15929018 ATAAAATAATATAATTTAAAATT-
1 ATAAAA-AATATAA-ATAAAATTA
*
15929041 TTAAAAAATTATAAATAAAATTA
1 ATAAAAAA-TATAAATAAAATTA
15929064 ATAAAAAA
1 ATAAAAAA
15929072 ATTTTACATT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
21 14 0.30
22 14 0.30
23 18 0.39
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (22 bp):
ATAAAAAATATAAATAAAATTA
Found at i:15929129 original size:31 final size:29
Alignment explanation
Indices: 15929094--15929152 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
15929084 ATATTTTCAC
* *
15929094 ATAAATATAAATTATGATATATAATTTTTTT
1 ATAAA-ATAAAATATGA-ATATAATATTTTT
*
15929125 ATAAAATAAAATATTAATATAATATTTT
1 ATAAAATAAAATATGAATATAATATTTT
15929153 ATATTATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 11 0.44
30 9 0.36
31 5 0.20
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
ATAAAATAAAATATGAATATAATATTTTT
Done.