genome.fa.s137.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167962.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48525

Tables:   1   

This is table  1  of  1  ( 118 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202--261	13	4.6	12	75	22	50	76	1	10	11	1.09
202--262	17	3.5	17	74	26	56	75	1	11	11	1.12
469--503	18	1.9	18	88	0	52	68	0	17	14	1.21
517--562	18	2.6	18	77	16	51	78	2	8	10	1.05
982--1118	57	2.4	56	74	14	134	67	4	9	18	1.35
1246--1283	18	2.1	19	85	5	51	76	0	15	7	1.01
2004--2044	22	1.9	21	85	5	55	73	2	4	19	1.13
2001--2107	54	2.0	54	83	7	137	71	1	12	14	1.22
2309--2366	20	3.1	19	73	19	50	74	3	8	13	1.19
2637--2676	17	2.2	17	86	8	53	77	2	7	12	1.07
2654--2709	25	2.3	23	78	9	58	75	5	8	10	1.19
3119--3180	23	2.6	24	80	17	76	75	1	8	14	1.10
4044--4099	28	2.0	27	83	10	69	66	1	16	16	1.35
4498--4538	22	1.9	21	85	5	55	75	2	2	19	1.03
5287--5339	23	2.3	24	80	9	65	77	1	7	13	1.06
5524--5563	19	2.0	20	85	4	55	77	0	15	7	0.98
6288--6328	22	1.9	21	85	5	55	73	2	4	19	1.13
6288--6393	55	1.9	55	83	7	135	72	1	11	14	1.20
6854--6887	17	1.9	18	88	5	52	67	0	17	14	1.23
6854--6887	18	1.9	17	88	5	50	67	0	17	14	1.23
6928--6982	24	2.3	23	78	12	58	74	5	9	10	1.21
7427--7480	22	2.4	22	79	14	56	75	5	7	11	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8356--8411	28	2.0	27	83	10	69	66	1	16	16	1.35
8810--8850	22	1.9	21	85	5	55	75	2	2	19	1.03
9838--9877	19	2.0	20	85	4	55	77	0	15	7	0.98
10602--10642	22	1.9	21	85	5	55	73	2	4	19	1.13
10598--10706	55	2.0	55	83	7	141	72	1	11	13	1.20
10909--10987	17	4.2	19	70	22	51	73	5	8	12	1.23
11185--11218	17	1.9	18	88	5	52	67	0	17	14	1.23
11185--11218	18	1.9	17	88	5	50	67	0	17	14	1.23
11760--11813	22	2.4	22	79	14	56	75	5	7	11	1.16
13120--13160	22	1.9	21	85	5	55	75	2	2	19	1.03
13407--13466	13	4.6	12	75	22	50	76	1	10	11	1.09
13407--13467	17	3.5	17	74	26	56	75	1	11	11	1.12
13724--13779	28	2.0	27	83	10	69	66	1	16	16	1.35
13888--13960	24	3.0	24	70	7	76	72	4	10	12	1.25
13891--13968	24	3.3	23	70	13	68	71	3	10	14	1.26
14127--14168	20	2.2	19	87	12	59	76	0	16	7	1.00
14127--14168	19	2.2	20	86	4	59	76	0	16	7	1.00
14893--14933	22	1.9	21	85	5	55	73	2	4	19	1.13
14893--14999	55	1.9	55	83	5	135	72	1	11	14	1.19
15200--15278	17	4.2	19	70	22	51	73	5	8	12	1.23
15476--15509	17	1.9	18	88	5	52	67	0	17	14	1.23
15476--15509	18	1.9	17	88	5	50	67	0	17	14	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15550--15615	25	2.7	23	76	15	62	75	7	7	9	1.18
16049--16102	22	2.4	22	79	14	56	75	5	7	11	1.16
16972--17027	28	2.0	27	83	10	69	66	1	16	16	1.35
18026--18081	28	2.0	27	83	10	69	66	1	16	16	1.35
18435--18476	20	2.2	19	87	12	59	76	0	16	7	1.00
18435--18476	19	2.2	20	86	4	59	76	0	16	7	1.00
19179--19219	22	1.9	21	85	5	55	75	2	2	19	1.03
19228--19271	23	1.9	24	81	9	56	72	2	15	9	1.19
19179--19286	56	1.9	56	81	5	128	74	1	10	13	1.16
19490--19568	17	4.2	19	70	22	51	73	5	8	12	1.23
19839--19904	25	2.7	23	76	15	62	75	7	7	9	1.18
20482--20534	23	2.2	24	83	3	72	71	1	11	15	1.22
20494--20540	23	2.1	23	84	7	62	70	0	17	12	1.17
21671--21711	22	1.9	21	85	5	55	75	2	2	19	1.03
22460--22512	23	2.3	24	80	9	65	77	1	7	13	1.06
22695--22734	19	2.0	20	85	4	55	77	0	15	7	0.98
22065--23343	702	1.8	689	81	11	1580	64	4	12	17	1.44
23451--23491	22	1.9	21	85	5	55	73	2	4	19	1.13
23500--23543	23	1.9	24	81	9	56	72	2	15	9	1.19
23447--23558	56	2.0	56	84	5	145	73	1	11	13	1.18
23759--23837	17	4.2	19	70	22	51	73	5	8	12	1.23
24093--24132	17	2.2	17	86	8	53	77	2	7	12	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25978--26019	22	1.9	22	85	0	57	76	2	2	19	1.01
26713--26765	23	2.3	24	80	9	65	77	1	7	13	1.06
26945--26987	19	2.3	19	84	4	52	76	0	16	6	0.99
26315--27603	711	1.8	696	82	11	1634	65	4	12	17	1.42
27715--27755	22	1.9	21	85	5	55	73	2	4	19	1.13
27841--27873	15	2.1	16	88	5	50	75	6	12	6	1.16
28031--28071	12	3.6	12	81	18	52	78	0	9	12	0.98
28275--28309	18	1.9	18	88	0	52	68	0	17	14	1.21
28845--28898	22	2.4	22	79	14	56	75	5	7	11	1.16
29455--29487	17	1.9	17	88	11	50	78	0	9	12	0.95
29472--29522	22	2.4	22	90	6	79	76	3	11	7	1.13
29512--29545	16	2.1	16	88	0	50	91	2	5	0	0.51
30208--30248	22	1.9	21	85	5	55	75	2	2	19	1.03
30975--31103	62	2.1	59	84	11	163	68	3	10	17	1.32
31010--31062	23	2.3	24	80	9	65	77	1	7	13	1.06
31246--31285	19	2.0	20	85	4	55	77	0	15	7	0.98
32008--32048	22	1.9	21	85	5	55	73	2	4	19	1.13
32057--32100	23	1.9	24	81	9	56	72	2	15	9	1.19
32327--32360	17	1.9	18	88	5	52	79	0	8	11	0.94
32607--32641	18	1.9	18	88	0	52	68	0	17	14	1.21
32664--32705	20	2.2	19	87	8	59	78	2	7	11	1.04
34533--34573	22	1.9	21	85	5	55	75	2	2	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34807--34867	13	4.6	12	75	18	50	77	1	9	11	1.07
34807--34868	17	3.4	18	74	22	58	75	1	11	11	1.11
35321--35373	23	2.3	24	80	9	65	77	1	7	13	1.06
35558--35597	19	2.0	20	85	4	55	77	0	15	7	0.98
36321--36361	22	1.9	21	85	5	55	73	2	4	19	1.13
36321--36425	55	1.9	55	82	5	133	73	1	11	13	1.18
36626--36704	17	4.2	19	70	22	51	73	5	8	12	1.23
36974--37036	24	2.7	23	75	18	58	74	7	7	9	1.22
38196--38257	24	2.8	22	72	18	56	66	11	6	16	1.43
38330--38383	27	2.0	26	82	10	65	64	1	16	16	1.37
38754--38794	22	1.9	21	85	5	55	75	2	2	19	1.03
39520--39636	60	2.0	58	86	6	166	68	4	10	17	1.34
39556--39605	23	2.3	21	86	6	64	76	2	8	14	1.10
39790--39829	19	2.0	20	85	4	55	77	0	15	7	0.98
40540--40580	22	1.9	21	85	5	55	73	2	4	19	1.13
40589--40632	23	1.9	24	81	9	56	72	2	15	9	1.19
40536--40647	56	2.0	56	84	5	145	73	1	11	13	1.18
40849--40927	17	4.2	19	70	22	51	73	5	8	12	1.23
41125--41159	18	1.9	18	88	0	52	68	0	17	14	1.21
41200--41255	25	2.3	23	78	9	58	75	5	8	10	1.19
41694--41747	22	2.4	22	79	14	56	75	5	7	11	1.16
43042--43082	22	1.9	21	85	5	55	75	2	2	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43329--43388	13	4.6	12	75	22	50	76	1	10	11	1.09
43329--43389	17	3.5	17	74	26	56	75	1	11	11	1.12
43841--43893	23	2.3	24	80	9	65	77	1	7	13	1.06
44832--44872	22	1.9	21	85	5	55	73	2	4	19	1.13
44881--44924	23	1.9	24	81	9	56	72	2	15	9	1.19
44828--44939	56	2.0	56	84	5	145	73	1	11	13	1.18
45203--45268	25	2.7	23	76	15	62	75	7	7	9	1.18
47690--47744	28	2.0	26	82	6	65	65	1	16	16	1.36

Tables:   1

The End!