Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167963.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48125
ACGTcount: A:0.65, C:0.05, G:0.13, T:0.17
Found at i:74 original size:38 final size:39
Alignment explanation
Indices: 17--124 Score: 116
Period size: 39 Copynumber: 2.7 Consensus size: 39
7 CTTCACTTTT
17 AAAATTGTGGAAGGGAAAAAGTTATTAAAAAA-GAACAA-GG
1 AAAATTGT-GAA-GGAAAAAGTTA-TAAAAAAGGAACAATGG
* *
57 -AAATTGTGAAGGAAAAAAGTTAAAAAATAAGGAAGAATGG
1 AAAATTGTGAAGG-AAAAAGTTATAAAA-AAGGAACAATGG
*
97 AAAATTGTG-AGGGAAAAGTTATAAAAAA
1 AAAATTGTGAAGGAAAAAGTTATAAAAAA
125 TTACAAAAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
37 6 0.10
38 16 0.27
39 24 0.41
40 5 0.08
41 8 0.14
ACGTcount: A:0.56, C:0.01, G:0.24, T:0.19
Consensus pattern (39 bp):
AAAATTGTGAAGGAAAAAGTTATAAAAAAGGAACAATGG
Found at i:864 original size:16 final size:17
Alignment explanation
Indices: 833--866 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
823 ATAAAAAATT
*
833 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
850 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
866 T
1 T
867 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:1302 original size:20 final size:20
Alignment explanation
Indices: 1278--1331 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
1268 TAAACAAAGA
1278 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
1297 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
1319 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
1332 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:1306 original size:26 final size:26
Alignment explanation
Indices: 1277--1352 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
1267 ATAAACAAAG
*
1277 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
1303 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
1329 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
1353 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:1324 original size:28 final size:26
Alignment explanation
Indices: 1259--1352 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
1249 ATAAAAATTT
*
1259 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
1288 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
1317 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
1345 ATAAAAAT
1 ATAAAAAT
1353 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:1572 original size:24 final size:22
Alignment explanation
Indices: 1545--1588 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
1535 TGGGGGAAAA
1545 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
1569 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
1589 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:1736 original size:13 final size:13
Alignment explanation
Indices: 1720--1744 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1710 AGCAAGAAAA
1720 AAAATAAAAAATG
1 AAAATAAAAAATG
1733 AAAATAAAAAAT
1 AAAATAAAAAAT
1745 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:3113 original size:20 final size:20
Alignment explanation
Indices: 3088--3125 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3078 TATAGAAAAA
*
3088 ATAAAAAATTCCAAAACTTT
1 ATAAAAAATTACAAAACTTT
*
3108 ATAAAAATTTACAAAACT
1 ATAAAAAATTACAAAACT
3126 ATAAACAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAAAAATTACAAAACTTT
Found at i:4183 original size:821 final size:783
Alignment explanation
Indices: 3187--4801 Score: 2247
Period size: 795 Copynumber: 2.0 Consensus size: 783
3177 GAAAAAGGAT
* *
3187 AAAT-AAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAATGTAAGAAAATA
1 AAATGAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAAGAAAAGA
* *
3251 AAAAAAGACAAAAATTGAATAAAATTTCAAAAATAAAATGGAAATGACAAAAAGGAAAAGAATAG
66 AAAAAAGACAAAAATTGAATAAAATTTCAAAAATAAAATGGAAATGACAAAAAGAAAAAAAATAG
*
3316 TTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCATACAAAAAAT
131 TTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAAT
* * *
3381 -TAAAAGGAG-AAAGTTAATGCAAAATAAAAAAAGTATTAGAATTTAAAAACAGAAATAAGAAAT
196 GAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTT--------AAATAAGAAAT
*
3444 GAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCACGAAAAAAATAAAAATGAAAAGACAAAATA
253 GAAAGGAAATTTGTGGGAAAAAAAATAGAATAG--C------------AA-GAAAAGACAAAAGA
* *
3509 TTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAACAGCGAAAAAATTAAAGCAAG-AAAAAT
303 TTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAAT
*
3572 GAAAGTATATG-AAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAAAT
368 GAAAGTAGATGAAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATT-AAAAAAT
*
3636 TACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTTATAAAA-A
432 TACAAAGCAG-AAAAAAATAAAAAAGATGCAAAAAATAAAAAAAAAAATTGAACTTTATAAAACA
*
3700 TTTCTAAAATATAAAAAAAAAATGAA-AAAAATAAATTAAGGG-AAAAAATTAAAATAAACAAAA
496 TTTCTAAAATATAAAAAAAAAATAAAGAAAAATAAATTAAGGGAAAAAAATTAAAAT-AA-AAAA
3763 AGAAAAAGTAACAAAGTAAGAAAATTTAAAACGAAGGAAAAAGTGA-ACAAA-AAAAAATGAAAG
559 A-AAAAA--AA-AAA-T-AGAAAA-TTAAAAC-AA--AAAAA-T-ATA-AAAGAAAAAATGAAAG
*
3826 CACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAATGCAAT
611 CACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATCAATGAAAAATT-TAAAAATGCAAT
* * *
3891 A-AAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAAT-AAAAATTCC-AAACTTTATAA
675 AGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAA
* *
3953 AACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAA
740 AAATTAT-AAACTAT-AA-AAAGAAAG-AAAT--AAAAATAAAAAAAAAA
* *
4003 AAATGAAAGCAACAGAAAAAAGATAAATAAAGCACAAAA-A-AACAAAAATTATAAAAAGTAAGA
1 AAATGAAAGC-ACA-AAAAAAGAGAAA-AAA-CA-AAAATACAACAAAAAATATAAAAAGTAAGA
* * *
4066 AAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGG-AATGACAAAAAGAAAA
61 AAAGAAAAAAAGACAAAAATTG-A-ATAAAATTTCAAAAATAAAATGGAAATGACAAAAAGAAAA
4130 AAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGAC
124 AAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGAC
*
4195 AAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAATTATGAGAATTTAAATAAGAAATG
189 AAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAATAAGAAATG
*
4260 AAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATAAAAAACA
254 AAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACA
* *
4325 GAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAA
319 AAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATG-AAAA
*
4390 AAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAA
383 AAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAA
* * *
4455 ATAAAAAAGATTCAAAAAATAAAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAAATA
448 ATAAAAAAGATGCAAAAAATAAAAAAAAAAATTGAACTTTATAAAACATTTCTAAAATATAAAAA
4520 AAAAATAAATGGAAAAATAAATTAAGGGAAAAAAATTAAAATAAAAAAAAAAAAAAAAATAGAAA
513 AAAAATAAA--GAAAAATAAATTAAGGGAAAAAAATTAAAATAAAAAAAAAAAAAAAAATAGAAA
* * * *
4585 ATTAAATCAAAAAAATATAAAAGGACAAAATGAAAGGACATAGAAAAAAGAAGAAAAATTTGAAA
576 ATTAAAACAAAAAAATATAAAA-GAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAA
*
4650 GGAGAAAAAGTCAATGAAAAATTTAAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAA
640 GGAGAAAAAATCAATGAAAAATTTAAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAA
4715 AAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTATAAACTATAAAAAGAAAGAAATAA
705 AAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTATAAACTATAAAAAGAAAGAAATAA
4780 AAATAAAAAAAAAA
770 AAATAAAAAAAAAA
4794 AAATGAAA
1 AAATGAAA
4802 AAAGAAAAAA
Statistics
Matches: 736, Mismatches: 38, Indels: 75
0.87 0.04 0.09
Matches are distributed among these distances:
791 23 0.03
793 8 0.01
794 23 0.03
795 104 0.14
796 16 0.02
797 19 0.03
798 6 0.01
799 6 0.01
800 35 0.05
801 36 0.05
802 68 0.09
803 40 0.05
804 50 0.07
805 5 0.01
806 18 0.02
807 13 0.02
813 1 0.00
815 44 0.06
816 4 0.01
817 5 0.01
818 3 0.00
819 11 0.01
820 43 0.06
821 89 0.12
822 33 0.04
823 33 0.04
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (783 bp):
AAATGAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATATAAAAAGTAAGAAAAGA
AAAAAAGACAAAAATTGAATAAAATTTCAAAAATAAAATGGAAATGACAAAAAGAAAAAAAATAG
TTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAAT
GAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAATAAGAAATGAAAGGAA
ATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAAT
AAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAAACA
AGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAATAAAAAA
GATGCAAAAAATAAAAAAAAAAATTGAACTTTATAAAACATTTCTAAAATATAAAAAAAAAATAA
AGAAAAATAAATTAAGGGAAAAAAATTAAAATAAAAAAAAAAAAAAAAATAGAAAATTAAAACAA
AAAAATATAAAAGAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAAT
CAATGAAAAATTTAAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAA
ATAAAAAATTCCAAAACTTTATAAAAATTATAAACTATAAAAAGAAAGAAATAAAAATAAAAAAA
AAA
Found at i:4371 original size:16 final size:17
Alignment explanation
Indices: 4340--4373 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
4330 ATAAAAAATT
*
4340 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
4357 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
4373 T
1 T
4374 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:4787 original size:20 final size:21
Alignment explanation
Indices: 4762--4811 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
4752 ATTATAAACT
* *
4762 ATAAAAAGAAAGAAAT-AAAA
1 ATAAAAAAAAAAAAATGAAAA
4782 ATAAAAAAAAAAAAATGAAAA
1 ATAAAAAAAAAAAAATGAAAA
*
4803 A-AGAAAAAA
1 ATAAAAAAAA
4812 TCTCTCTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (21 bp):
ATAAAAAAAAAAAAATGAAAA
Found at i:4812 original size:15 final size:14
Alignment explanation
Indices: 4764--4812 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
4754 TATAAACTAT
* * *
4764 AAAAAGAAAGAAAT
1 AAAAATAAAAAAAA
4778 AAAAATAAAAAAAA
1 AAAAATAAAAAAAA
*
4792 AAAAATGAAAAAAGA
1 AAAAAT-AAAAAAAA
4807 AAAAAT
1 AAAAAT
4813 CTCTCTCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (14 bp):
AAAAATAAAAAAAA
Found at i:5069 original size:24 final size:22
Alignment explanation
Indices: 5042--5085 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
5032 TGGGGGAAAA
5042 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
5066 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
5086 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:5230 original size:13 final size:13
Alignment explanation
Indices: 5214--5238 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5204 AGCAAGAAAA
5214 AAAATAAAAAATG
1 AAAATAAAAAATG
5227 AAAATAAAAAAT
1 AAAATAAAAAAT
5239 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:5557 original size:17 final size:17
Alignment explanation
Indices: 5527--5561 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5517 TTATGAAACT
* *
5527 ATAAACAAAGAAAGAAA
1 ATAAAAAAAAAAAGAAA
5544 ATAAAAAAAAAAAGAAA
1 ATAAAAAAAAAAAGAAA
5561 A
1 A
5562 AAGATAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.83, C:0.03, G:0.09, T:0.06
Consensus pattern (17 bp):
ATAAAAAAAAAAAGAAA
Found at i:6671 original size:13 final size:13
Alignment explanation
Indices: 6638--6676 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
6628 ATAAACAAAG
6638 AAAGAAAATAAAA
1 AAAGAAAATAAAA
6651 AACA-AAAATAAAA
1 AA-AGAAAATAAAA
6664 AAAGAAAA-AAAA
1 AAAGAAAATAAAA
6676 A
1 A
6677 TGAAAGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.25
13 17 0.71
14 1 0.04
ACGTcount: A:0.87, C:0.03, G:0.05, T:0.05
Consensus pattern (13 bp):
AAAGAAAATAAAA
Found at i:7176 original size:20 final size:21
Alignment explanation
Indices: 7143--7196 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
7133 AAAAGTTATT
* *
7143 AAAAAATTACAAAGAAG-AAA
1 AAAAAATAAAAAAGAAGCAAA
*
7163 AAAAAATAAAAAAGATGCAAA
1 AAAAAATAAAAAAGAAGCAAA
* *
7184 AAATAAGAAAAAA
1 AAAAAATAAAAAA
7197 AAATTGAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (21 bp):
AAAAAATAAAAAAGAAGCAAA
Found at i:7844 original size:24 final size:22
Alignment explanation
Indices: 7817--7860 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
7807 TGGGGGAAAA
7817 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
7841 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
7861 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:8006 original size:13 final size:13
Alignment explanation
Indices: 7990--8014 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7980 AGCAAGAAAA
7990 AAAATAAAAAATG
1 AAAATAAAAAATG
8003 AAAATAAAAAAT
1 AAAATAAAAAAT
8015 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:8160 original size:801 final size:792
Alignment explanation
Indices: 6238--8463 Score: 2556
Period size: 801 Copynumber: 2.7 Consensus size: 792
6228 AAATATAAAT
*
6238 AAAAATAAAAGAAGTTTGAGGTTTTAAAATTAT-AAAGAAGAAATAAAAAAAAAAAGTGGGAACA
1 AAAAA-AAAAGAAGTTT-AGGTTTTAAAATTATGAAA-AAGAAAT---AAAAAAAAGTGTGAACA
* * *
6302 AAAAGATTTAACAAAAAGCAAGAAAAAAAATAAAAAAGGAAAATACAAAATACATAAAATAAAAT
60 AAAAGATTTAAAAAAAAGCAAGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAAT
6367 TTGAGAAAAAAAAAAGGGAAAAAGAAGAAAAAAATAAAAAGTGAAGAGGCAAAAACATGAAAGAA
125 TTGAG------AAAA-GG---AAG-A-AAAAAAATAAAAA-TGAAGAGGCAAAAA-ATGAAAGAA
* *
6432 AAGAAAAATAAAAAAATTTATAGAAAATTTTAAAACAAAGG---AA--AAC-------GTGAAAG
176 AAGAAAAAGAAAAAAATTTATAGAAAATTTTAAAACAAAGGAAAAAGTAACAAAAAAAATGAAAG
*
6485 CACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAAT
241 CACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAAT
*
6549 AGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAA
306 AGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAA
*
6614 AAATTTACGAAACTATAAACAAAGAAAGAAAATAAAAAACAAAAATAAAAAAAGAAAAAAAAATG
371 AAATTTATGAAACTATAAACAAAGAAAGAAAAT----AA-AAAAAT--AAAAAG--AAAAAAATG
*
6679 AAAGCAA-ACGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAA
427 AAAGCAACA-GAAAAAAGATAAATAAAGCAC--------A-AAAAAACAAAAAT-----------
*
6743 TATAAAAAGTAAGAAAATAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATG
471 TATAAAAAGTAAGAAAATAAAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATG
* *
6808 AC-AAAAGAGGAAAAGAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAAT
536 ACAAAAAGA-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAAT
*
6872 ATAAAAAGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAA
600 ATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAA
* * *
6937 TTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCACGAAAAGA
665 TTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAAAGAAAAGCAAGAAAAGA
* * * **
7002 ATAAAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAAATAAAAATTTTAAAACAGCG
730 ATAAAAATGAAAAGAAAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATAGAAAACAGCG
**** * * * * *
7065 AAAAAATTAAAGCAAG---AAAAATGAAAGTATATGAAAAAAAAACAAGAAGAAGGAAAATTGTG
1 AAAAAA--AAAG-AAGTTTAGGTTTTAAAAT-TATG--AAAAAGA-AATAA-AA--AAAAGTGTG
* *
7127 AAGGGAAAAAGTTATTAAAAAATTACAAAG-AAGAAAAAAAAATAAAAAAGATGCAAAAAATAAG
56 AA--CAAAAAG--ATT-TAAAA--A-AAAGCAAG-AAAAAAAAT-AAAAA-ATG---AAAAT-A-
* * * * ** * *
7191 AAAAAAAAATTGAACTTTATAAAAATTTTCTA-AAATATAAAAAAAAATAAATGAAAAAATAAAT
105 AAAAATACA-T-AA---AAT-AAAA-TTT-GAGAAA-AGGAAGAAAAA-AAAT--AAAAATGAA-
* * * * *** *
7255 TAAGGGAAAAAATTAAA-ATAAACAAAAAGAAAAAAGTAACAAAGTAAGAAAATTTTAAAACGAA
157 -GAGGCAAAAAATGAAAGA-AAAGAAAAAG-AAAAA--AATTTA-T-AGAAAATTTTAAAACAAA
7319 GGAAAAAGTGAACAAAAAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAA
215 GGAAAAAGT-AAC--AAAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAA
* *
7384 AAATTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATA
277 AAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATA
**
7449 GAAAAATAAAAAATTCCAAAACTTTATAAAAGCTTATGAAACTATAAACAAAGAAAGAAAATAAA
342 GAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAA
7514 AAAATAAAAAGAAAAAAATGAAAGCAACAGAAAAAAGATAAATAAAGCACAAAAAAACAAAAATT
407 AAAATAAAAAGAAAAAAATGAAAGCAACAGAAAAAAGATAAATAAAGCACAAAAAAACAAAAATT
* *
7579 ATAAAAAGTAAGAAAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATG
472 ATAAAAAGTAAGAAAATAAAAAAGGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATG
7644 ACAAAAAGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATA
536 ACAAAAAGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATA
7709 TAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTATGAGAAT
601 TAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAAT
7773 TTAAAAAC-GCAAATAAGAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAGAAAA
666 TTAAAAACAG-AAATAAGAAATGAAAGGAAATTTGT--GGGAAAAAAAAAAGAAAAGCAAGAAAA
* *
7837 GAATAAAAATGAAAAGAAAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAATAGAAGAA-AGT
728 GAATAAAAATGAAAAGAAAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATAGAA-AACAGC
7901 G
792 G
7902 CACAAAAAAAAGAAGTTTCAGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAA
1 -A-AAAAAAAAGAAGTTT-AGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAA
*
7967 AGATTTAAGAAAAAGCAAGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTG
63 AGATTTAAAAAAAAGCAAGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTG
8032 AGAAAAGGAAGAAAAAAAATAAGAAATGAAGAGGCAAAAATATGAAAGAAAAGAAAAAGAAAAAA
128 AGAAAAGGAAGAAAAAAAATAA-AAATGAAGAGGCAAAAA-ATGAAAGAAAAGAAAAAGAAAAAA
*
8097 ATTTATAGAAAAATTTAAAACAAAGGAAAAAGTTAACAAAAAAAATGAAAGCACATAAAAAAAAA
191 ATTTATAGAAAATTTTAAAACAAAGGAAAAAG-TAACAAAAAAAATGAAAGCACAT-AAAAAAAA
8162 GAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGA
254 GAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGA
*
8227 GAATGATAAAAGAAAAGAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAAC
319 GAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAAC
*
8292 TATAAACAAAGAAAGAAAAT-AAAAAATAAAAAGAAAAAAGATAAACAAAGCACACA-AAAAAAG
384 TATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAA-AT---GAAAGCA-ACAGAAAAAAG
* ** *
8355 --AAA-AAA-CA-AAAATACAACAAAAAATATAAAAAGTAAGAATTTAAAAAAGGAGAAAAATTG
444 ATAAATAAAGCACAAAA-A-AACAAAAATTATAAAAAGTAAGAAAATAAAAAAGGACAAAAATTG
*
8415 AATAAAAATTTCAAAAATGAAATAGAATGACAAAAAG-AAAAAAAATAGT
507 AATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAATAGT
8464 AAACATATAA
Statistics
Matches: 1211, Mismatches: 98, Indels: 208
0.80 0.06 0.14
Matches are distributed among these distances:
799 16 0.01
800 73 0.06
801 202 0.17
802 30 0.02
803 2 0.00
804 16 0.01
805 3 0.00
806 13 0.01
807 16 0.01
808 7 0.01
809 4 0.00
810 9 0.01
811 6 0.00
812 4 0.00
813 2 0.00
816 2 0.00
817 1 0.00
818 7 0.01
819 1 0.00
820 5 0.00
823 3 0.00
824 5 0.00
825 19 0.02
826 10 0.01
827 7 0.01
828 10 0.01
829 20 0.02
831 12 0.01
833 13 0.01
834 4 0.00
835 89 0.07
836 138 0.11
837 108 0.09
838 8 0.01
839 11 0.01
840 10 0.01
841 5 0.00
842 11 0.01
843 19 0.02
844 19 0.02
845 4 0.00
846 19 0.02
847 2 0.00
848 19 0.02
849 2 0.00
850 4 0.00
851 5 0.00
852 1 0.00
854 3 0.00
855 36 0.03
856 1 0.00
857 6 0.00
859 6 0.00
860 2 0.00
863 11 0.01
864 150 0.12
ACGTcount: A:0.66, C:0.05, G:0.13, T:0.16
Consensus pattern (792 bp):
AAAAAAAAAGAAGTTTAGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAAAGA
TTTAAAAAAAAGCAAGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTGAGA
AAAGGAAGAAAAAAAATAAAAATGAAGAGGCAAAAAATGAAAGAAAAGAAAAAGAAAAAAATTTA
TAGAAAATTTTAAAACAAAGGAAAAAGTAACAAAAAAAATGAAAGCACATAAAAAAAAGAAGAAA
AATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGAT
AAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAAC
AAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAAGCAACAGAAAAAAGATAAATAAAGCA
CAAAAAAACAAAAATTATAAAAAGTAAGAAAATAAAAAAGGACAAAAATTGAATAAAAATTTCAA
AAATGAAATGGAATGACAAAAAGAAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATA
TAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAA
AAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAAAGA
AAAGCAAGAAAAGAATAAAAATGAAAAGAAAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAA
TAGAAAACAGCG
Found at i:9091 original size:20 final size:20
Alignment explanation
Indices: 9067--9120 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
9057 TAAACAAAGA
9067 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
9086 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
9108 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
9121 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:9095 original size:26 final size:26
Alignment explanation
Indices: 9066--9141 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
9056 ATAAACAAAG
*
9066 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
9092 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
9118 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
9142 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:9113 original size:28 final size:26
Alignment explanation
Indices: 9048--9141 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
9038 ATAAAAATTT
*
9048 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
9077 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
9106 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
9134 ATAAAAAT
1 ATAAAAAT
9142 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:9361 original size:24 final size:22
Alignment explanation
Indices: 9334--9377 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
9324 TGGGGGAAAA
9334 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
9358 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
9378 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:9523 original size:13 final size:13
Alignment explanation
Indices: 9507--9531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9497 AGCAAGAAAA
9507 AAAATAAAAAATG
1 AAAATAAAAAATG
9520 AAAATAAAAAAT
1 AAAATAAAAAAT
9532 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:9755 original size:754 final size:755
Alignment explanation
Indices: 7591--10154 Score: 2939
Period size: 754 Copynumber: 3.4 Consensus size: 755
7581 AAAAAGTAAG
*
7591 AAAAGAAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAA
1 AAAAG-AAAAAGGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAAG-AAA
7656 AAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGA
63 AAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGA
7721 CAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAA
128 CAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAA
7786 TAAGAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAA
193 TAAGAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAA
7851 AGAAAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAATAGAAGAAAGTGCACAAAAAAAAGAA
258 AGAAAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAATAGAAGAAAGTGCACAAAAAAAAGAA
7916 GTTTCAGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAAAGATTTAAGAAAAA
323 GTTTCAGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAAAGATTTAAGAAAAA
7981 GCAAGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTGAGAAAAGGAAGAAA
388 GCAAGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTGAGAAAAGGAAGAAA
8046 AAAAATAAGAAATGAAGAGGCAAAAATATGAAAGAAAAGAAAAAGAAAAAAATTTATAGAAAAAT
453 AAAAATAAGAAATGAAGAGGCAAAAATATGAAAGAAAAGAAAAAGAAAAAAATTTATAGAAAAAT
8111 TTAAAACAAAGGAAAAAGTTAACAAAAAAAATGAAAGCACATAAAAAAAAAGAAGAAAAATTTGA
518 TTAAAACAAAGGAAAAAGTTAACAAAAAAAATGAAAGCACATAAAAAAAAAGAAGAAAAATTTGA
8176 AAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAA
583 AAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAA
8241 AAGAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAA
648 AAGAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAA
8306 GAAAATAAAAAATAAAAAGAAAAAAGATAAACAAAGCACACAAA
713 GAAAATAAAAAATAAAAAG-AAAAAGATAAACAAAGCACACAAA
** * * * * * *
8350 AAAAGAAAAA--ACAAAAATACAACAAAAAATAT-AAAAA-GTAA--GAATTTA-AAAAAGGAGA
1 AAAAGAAAAAGGACAAAAATTGAA-TAAAAATTTCAAAAATGAAATGGAA-TGACAAAAAGAAAA
* ** * * * * * * * * *
8408 AAAATTGAATAAAAATTTC-AAAAA-TGAAATAGA-AT--GA-CAAAAAGAAAAAAAATAGT-AA
64 AAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACA-ATATAAAA-AGTCAG
** * * * *** *
8466 ACATATAAGACCTAACAATA-ACAAAAGTCAGACAAAAAATAAAAAGAGTATGAGAATTTAAAAA
127 ACA-A-AA-AATTAA-AAAAGAGAAAAGTTA-ATGCAAAATAAAAAAAGTATGAGAATTTAAAAA
* * * *
8530 CGGAAATAAAAAATGAAAGGAAATTTGT--GGG-AAAAAAATAGAATAGCAAGAAAAAGAATAAA
187 CGCAAATAAGAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAG-AAAAGAATAAA
* * * **
8592 ATTGAAAAGACAAAAGATTTGGAATAAAAAACAGAGAAATAAAAAA-ATTA-AAA---CA-AGAA
251 AATGAAAAGAAAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAATAGAAGAAAGTGCACA-AA
* * * * ** * ** * *
8651 AAAATGAAAG-TACACG----AAAA-AAAAAAACAAG-AACAAGGAAAATTGTGAAGGGAAAAAG
315 AAAAAG-AAGTTTCAGGTTTTAAAATTATGAAA-AAGAAATAAAAAAAAGTGTGAA--CAAAAAG
* * * *
8709 TTATTAA-AAAATTA-CAAAGTAGAAAAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAAAATT
376 AT-TTAAGAAAA--AGC-AAG-A-AAAAAAAT-AAAAA-A-T--GAAAAT---AAAAAATACA-T
* *** * * * *
8772 GAACTTTATAAAACTTTTCTAAAA-TATA-AATAAAAAATAAATGGAAAAATAAATTAAGGGAAA
426 -AA---AATAAAA-TTTGAGAAAAGGA-AGAA-AAAAAAT-AA--G--AAATGAA--GAGGCAAA
* * * * *
8835 AAAATTAAATAAAATACGAAAAA-AGGAAAAA---ATAG-AAAA-TTAGCGAATC-AA--AAAAA
477 AATATGAAA-GAAA-A-GAAAAAGA-AAAAAATTTATAGAAAAATTTA---AAACAAAGGAAAAA
* * * *
8891 -TATAA-AAGGACAAAATGAAAGGACAT-AGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTC
535 GT-TAACAA--AAAAAATGAAAGCACATAAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTT
* * * *
8953 AATGAAAAATTGTAAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAA
597 AATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAAAAGAAGATAGAAAA
*
9018 ATAAAAAATTCCAAAACTTTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAATAAAAAATA
662 ATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAATA
*
9083 AATATAGAAAAAGA-AAA-AATA-CA-ATAAA
727 AA-A-AGAAAAAGATAAACAA-AGCACACAAA
* * *
9111 AATATAAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAATGAAAAAA
1 AAAAGAAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAA
9176 AATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAA
66 AATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAA
9241 AAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAA
131 AAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAA
9306 GAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGA
196 GAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGA
9371 AAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAATAGAAGAAAGTGCACAAAAAAAAGAAGTT
261 AAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAATAGAAGAAAGTGCACAAAAAAAAGAAGTT
9436 TCAGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAAAGATTTAAGAAAAAGCA
326 TCAGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAAAGATTTAAGAAAAAGCA
9501 AGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTGAGAAAAGGAAGAAAAAA
391 AGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTGAGAAAAGGAAGAAAAAA
9566 AATAAGAAATGAAGAGGCAAAAATATGAAAGAAAAGAAAAAGAAAAAAATTTATAGAAAAATTTA
456 AATAAGAAATGAAGAGGCAAAAATATGAAAGAAAAGAAAAAGAAAAAAATTTATAGAAAAATTTA
9631 AAACAAAGGAAAAAGTTAACAAAAAAAATGAAAGCACATAAAAAAAAAGAAGAAAAATTTGAAAG
521 AAACAAAGGAAAAAGTTAACAAAAAAAATGAAAGCACATAAAAAAAAAGAAGAAAAATTTGAAAG
9696 GAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAAAAG
586 GAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAAAAG
9761 AAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAA
651 AAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAA
*
9826 AATAAAAAATAAAAAGAAAAAAGATAAATAAAGCACACAAA
716 AATAAAAAATAAAAAG-AAAAAGATAAACAAAGCACACAAA
** * * * * * *
9867 AAAAGAAAAA--ACAAAAATACAACAAAAAATAT-AAAAA-GTAA--GAATTTA-AAAAAGGAGA
1 AAAAGAAAAAGGACAAAAATTGAA-TAAAAATTTCAAAAATGAAATGGAA-TGACAAAAAGAAAA
* ** * * * * * * * * *
9925 AAAATTGAATAAAAATTTC-AAAAA-TGAAATAGA-AT--GA-CAAAAAGAAAAAAAATAGT-AA
64 AAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACA-ATATAAAA-AGTCAG
** * * * *
9983 ACATATAAGACCTAACAATA-ACAAAAG-TCA-GACAAAAAACAAAAAGAGTATGAGAATTTAAA
127 ACA-A-AA-AATTAA-AAAAGAGAAAAGTTAATG-CAAAATA-AAAAA-AGTATGAGAATTTAAA
* * * *
10045 AACGGAAATAAAAAATGAAAGGAAATTTGT--GGG-AAAAAAATAGAATAGCAAGAAAAAGAATA
185 AACGCAAATAAGAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAG-AAAAGAATA
* * *
10107 AAATTGAAAAGACAAAAGATTTGGAATAAAAAACAGAGAAATAAAAAA
249 AAAATGAAAAGAAAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAA
10155 ATTAAAACAA
Statistics
Matches: 1492, Mismatches: 192, Indels: 253
0.77 0.10 0.13
Matches are distributed among these distances:
738 18 0.01
739 7 0.00
740 11 0.01
741 5 0.00
742 5 0.00
743 14 0.01
744 11 0.01
745 13 0.01
746 28 0.02
747 46 0.03
748 130 0.09
749 57 0.04
750 117 0.08
751 46 0.03
752 40 0.03
753 33 0.02
754 202 0.14
755 19 0.01
756 28 0.02
757 10 0.01
758 22 0.01
759 22 0.01
760 9 0.01
761 13 0.01
762 14 0.01
763 199 0.13
764 31 0.02
765 31 0.02
766 30 0.02
767 65 0.04
768 35 0.02
769 61 0.04
770 24 0.02
771 16 0.01
772 9 0.01
773 11 0.01
774 14 0.01
775 5 0.00
776 5 0.00
777 11 0.01
778 7 0.00
779 18 0.01
ACGTcount: A:0.65, C:0.05, G:0.13, T:0.16
Consensus pattern (755 bp):
AAAAGAAAAAGGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAA
AATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAA
AAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAA
GAAATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGA
AAAAAGATTTGGAATAAAAAACAGAAAAATAAAAAATAGAAGAAAGTGCACAAAAAAAAGAAGTT
TCAGGTTTTAAAATTATGAAAAAGAAATAAAAAAAAGTGTGAACAAAAAGATTTAAGAAAAAGCA
AGAAAAAAAATAAAAAATGAAAATAAAAAATACATAAAATAAAATTTGAGAAAAGGAAGAAAAAA
AATAAGAAATGAAGAGGCAAAAATATGAAAGAAAAGAAAAAGAAAAAAATTTATAGAAAAATTTA
AAACAAAGGAAAAAGTTAACAAAAAAAATGAAAGCACATAAAAAAAAAGAAGAAAAATTTGAAAG
GAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAAGAAAAG
AAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAGAAAGAA
AATAAAAAATAAAAAGAAAAAGATAAACAAAGCACACAAA
Found at i:10716 original size:90 final size:90
Alignment explanation
Indices: 10600--10791 Score: 296
Period size: 90 Copynumber: 2.1 Consensus size: 90
10590 CAAAAAGAAG
* * *
10600 AAAAAAAATAAAAAAGAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
10665 GAAAAAAAAAAAAAAAAAA-ATAAAA
65 AAAAAAAAAAAAAAAAAAACATAAAA
**
10690 AAAAAAAAAAAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10755 AAAAAAAAAAAAAAAAAACATAAAA
66 AAAAAAAAAAAAAAAAAACATAAAA
* *
10780 AAAGAATAAAAA
1 AAAAAAAAAAAA
10792 TTTGAAAGGA
Statistics
Matches: 93, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 46 0.49
90 47 0.51
ACGTcount: A:0.93, C:0.01, G:0.04, T:0.03
Consensus pattern (90 bp):
AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAACATAAAA
Found at i:10791 original size:1 final size:1
Alignment explanation
Indices: 10600--10782 Score: 258
Period size: 1 Copynumber: 183.0 Consensus size: 1
10590 CAAAAAGAAG
* * ** *
10600 AAAAAAAATAAAAAAGAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * ***
10665 GAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAGGGAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
10730 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
10783 GAATAAAAAT
Statistics
Matches: 166, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 166 1.00
ACGTcount: A:0.93, C:0.01, G:0.03, T:0.03
Consensus pattern (1 bp):
A
Found at i:10957 original size:13 final size:13
Alignment explanation
Indices: 10924--10962 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
10914 ATAAACAAAG
10924 AAAGAAAATAAAA
1 AAAGAAAATAAAA
10937 AACA-AAAATAAAA
1 AA-AGAAAATAAAA
10950 AAAGAAAA-AAAA
1 AAAGAAAATAAAA
10962 A
1 A
10963 TGAAAGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.25
13 17 0.71
14 1 0.04
ACGTcount: A:0.87, C:0.03, G:0.05, T:0.05
Consensus pattern (13 bp):
AAAGAAAATAAAA
Found at i:11966 original size:835 final size:817
Alignment explanation
Indices: 10772--12632 Score: 2658
Period size: 817 Copynumber: 2.2 Consensus size: 817
10762 AAAAAAAAAA
*
10772 ACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATA
1 ACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATA
*
10836 GAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA
66 GAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA
*
10901 AATTTACGAAACTATAAACAAAGAAAGAAAATAAAAAACAAAAATAAAAAAAGAAAAAAAAATGA
131 AATTTATGAAACTATAAACAAAGAAAGAAAAT----AA-AAAAAT--AAAAAG--AAAAAAATGA
*
10966 AAGCAAACGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAAAAAATA
187 AAGCAAACGAAAAAAGATAAATAAAGCAC------A-AGAAAAAACAAAAAT----------ATA
*
11031 TAAAAAGTAAGAAAATAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGAC
235 TAAAAAGTAAGAAAAGAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGAC
* *
11096 AAAAGAGGAAAAGAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATA
300 AAAAGAGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATA
* *
11161 AAAAGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAATTT
365 AAAAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTATGAGAATTT
11226 AAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGG-AAAAAAATAGAATAGCACGAAAAGAATA
429 AAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAG--C----------
* *
11290 AAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAACAGCGAAAA
482 --AA-GAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAACAACGAAAA
* *
11354 AATTAAAGCAAG-AAAAATGAAAGTATATG-AAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGG
544 AATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGG
11417 AAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAAATAAAAAAGATGCAAAAAATAAG-AAAAA
609 AAAAAGTTATTAAAAAATTACAAAGCAG--AAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAA
11481 AAAATTGAACTTTATAAAAATTTTCTAAAATATAAA-AAAAAATAAATGAAAAAATAAATTAAGG
672 AAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAAAAATAAATGAAAAAATAAATTAAGG
* * *
11545 G-AAAAAATTAAAATAAACAAAAAGAAAAAAGTAACAAAGTAAGAAAATTTTAAAACGAAGGAAA
737 GAAAAAAATT-AAAT-AA-AAAAAGAAAAAAGGAA-AAAAT-AGAAAA--TT--AACGAAGCAAA
11609 AAGTGAACA-AAAA-A-AAAATGAAAGC
793 AA---AACATAAAAGACAAAATGAAAGC
*
11634 ACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAATGCAATA
1 ACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATA
*
11699 GAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA
66 GAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA
**
11764 AGCTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAAGC-AACA
131 AATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAAGCAAAC-
*
11828 GAAAAAAGATAAATAAAGCAC-A-AAAAAACAAAAAT-TATAAAAAGTAAGAAAAGAAAAAAGGA
195 GAAAAAAGATAAATAAAGCACAAGAAAAAACAAAAATATATAAAAAGTAAGAAAAGAAAAAAAGA
*
11890 CAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAA-AGAAAAAAAAATAGTTTAA
260 CAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAGAG-AAAAAAAATAGTTTAA
11954 AAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAAAA
323 AAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAAAA
*
12019 AAGAGAAAAGTTAATGCAAAATAAAAAAATTATGAGAATTTAAAAACAGAAATAAGAAATGAAAG
388 AAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAAAG
* *
12084 GAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATAAAAAACAGAAA
453 GAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACAAAAA
*
12149 AATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAA
518 AATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATG-AAAAAAAA
*
12214 AACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAA
582 AACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAATAA
* *
12279 AAAAGATTCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAAATAAA
647 AAAAGATGCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAA
* * *
12344 AAATAAATGGAAAAATAAATTAAGGGAAAAAAATTAAATAAAATACGAAAAAAGGAAAAAATAGA
712 AAATAAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAAATAGA
* * * *
12409 AAATTAGCGAATCAAAAAAATATAAAAGGACAAAATGAAAGG
777 AAATTAACGAAGCAAAAAAACATAAAA-GACAAAATGAAAGC
* * *
12451 ACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTCAATGAAAAATTGTAAAAATGCAATA
1 ACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATA
* *
12516 GAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA
66 GAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA
*
12581 AATTTATAAAACTATAAACAAAGAAAGAAAAT-AAAAAATAAATATAGAAAAA
131 AATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAA-A-AGAAAAA
12633 GAAAAAATAC
Statistics
Matches: 935, Mismatches: 46, Indels: 80
0.88 0.04 0.08
Matches are distributed among these distances:
813 3 0.00
814 4 0.00
816 21 0.02
817 163 0.17
818 9 0.01
820 40 0.04
821 37 0.04
822 57 0.06
823 42 0.04
824 93 0.10
825 8 0.01
833 1 0.00
834 93 0.10
835 145 0.16
845 13 0.01
846 1 0.00
853 3 0.00
854 34 0.04
856 6 0.01
858 6 0.01
859 2 0.00
862 4 0.00
863 150 0.16
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (817 bp):
ACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATA
GAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAA
AATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAAGCAAACG
AAAAAAGATAAATAAAGCACAAGAAAAAACAAAAATATATAAAAAGTAAGAAAAGAAAAAAAGAC
AAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAGAGAAAAAAAATAGTTTAAAAA
ATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAAAAAAG
AGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAA
ATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAAT
AAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAAACA
AGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAATAAAAAA
GATGCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAAAAAT
AAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAAATAGAAAAT
TAACGAAGCAAAAAAACATAAAAGACAAAATGAAAGC
Found at i:12191 original size:16 final size:17
Alignment explanation
Indices: 12160--12193 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
12150 ATAAAAAATT
*
12160 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
12177 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
12193 T
1 T
12194 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:12629 original size:20 final size:20
Alignment explanation
Indices: 12605--12658 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
12595 TAAACAAAGA
12605 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
12624 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
12646 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
12659 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:12633 original size:26 final size:26
Alignment explanation
Indices: 12604--12679 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
12594 ATAAACAAAG
*
12604 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
12630 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
12656 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
12680 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:12651 original size:28 final size:26
Alignment explanation
Indices: 12586--12679 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
12576 ATAAAAATTT
*
12586 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
12615 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
12644 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
12672 ATAAAAAT
1 ATAAAAAT
12680 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:12899 original size:24 final size:22
Alignment explanation
Indices: 12872--12915 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
12862 TGGGGGAAAA
12872 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
12896 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
12916 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:13061 original size:13 final size:13
Alignment explanation
Indices: 13045--13069 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13035 AGCAAGAAAA
13045 AAAATAAAAAATG
1 AAAATAAAAAATG
13058 AAAATAAAAAAT
1 AAAATAAAAAAT
13070 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:14489 original size:13 final size:13
Alignment explanation
Indices: 14456--14494 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
14446 ATAAACAAAG
14456 AAAGAAAATAAAA
1 AAAGAAAATAAAA
14469 AACA-AAAATAAAA
1 AA-AGAAAATAAAA
14482 AAAGAAAA-AAAA
1 AAAGAAAATAAAA
14494 A
1 A
14495 TGAAAGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.25
13 17 0.71
14 1 0.04
ACGTcount: A:0.87, C:0.03, G:0.05, T:0.05
Consensus pattern (13 bp):
AAAGAAAATAAAA
Found at i:14866 original size:28 final size:27
Alignment explanation
Indices: 14817--14870 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
14807 AGCACGAAAA
** *
14817 GAATAAAAATGAAAAGACAAAATATTTG
1 GAATAAAAACAAAAAAACAAAA-ATTTG
*
14845 GAATAAAAACAAAAAAATAAAAATTT
1 GAATAAAAACAAAAAAACAAAAATTT
14871 TAAAACAGCG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 4 0.18
28 18 0.82
ACGTcount: A:0.67, C:0.04, G:0.09, T:0.20
Consensus pattern (27 bp):
GAATAAAAACAAAAAAACAAAAATTTG
Found at i:15719 original size:16 final size:17
Alignment explanation
Indices: 15688--15721 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15678 ATAAAAAATT
*
15688 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
15705 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
15721 T
1 T
15722 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:16157 original size:20 final size:20
Alignment explanation
Indices: 16133--16186 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
16123 TAAACAAAGA
16133 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
16152 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
16174 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
16187 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:16161 original size:26 final size:26
Alignment explanation
Indices: 16132--16207 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
16122 ATAAACAAAG
*
16132 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
16158 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
16184 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
16208 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:16179 original size:28 final size:26
Alignment explanation
Indices: 16114--16207 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
16104 ATAAAAATTT
*
16114 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
16143 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
16172 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
16200 ATAAAAAT
1 ATAAAAAT
16208 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:16427 original size:24 final size:22
Alignment explanation
Indices: 16400--16443 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
16390 TGGGGGAAAA
16400 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
16424 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
16444 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:16589 original size:13 final size:13
Alignment explanation
Indices: 16573--16597 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16563 AGCAAGAAAA
16573 AAAATAAAAAATG
1 AAAATAAAAAATG
16586 AAAATAAAAAAT
1 AAAATAAAAAAT
16598 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:17317 original size:754 final size:755
Alignment explanation
Indices: 15431--17319 Score: 1773
Period size: 754 Copynumber: 2.5 Consensus size: 755
15421 ATTTGAATAT
* **
15431 AAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAAATAGTTTAAAAAATACAAAAAAT
1 AAAATATCAAAAATGAAA-GGAATGACAAAAAG--AAAAAAAATAGAATAAAAAATACAAAAAAT
* * * * * * *
15496 TGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAA-TGAAAAAAGAGAAAAGTTA
63 TGAAAAACATAT-AGACCAAAAAAAAAAAAAAGTCAAACAAAAAACT-AAAAAAGACAAAAGTCA
*** * *
15560 ATGCAAAATAAAAAAATTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGA
126 ACAAAAAATAAAAAAAGTATGAGAATTTAAAAACGGAAATAAGAAATGAAAGGAAATTTGTGGGA
* **
15625 AAAAAAATAGAATAGCAAGAAAAGACA-AAAGCTTTGGAATAA-AAAACAGA---AAAATAAAAA
191 AAAAAAATAGAATAGCAAGAAAAGA-ATAAA--ATT-GAA-AAGAAAA-AGATTTGGAATAAAAA
* ** *
15685 ATTTTA-AAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAAAACAAGA
250 A---CAGAAA-AATAAAAAAATTAAAACAAGAAAAAATGAAAGTACA-G-AAAAAAAAAACAAGA
* *
15749 AGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAATAAAAAAGAT
309 A-AAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAAGAAAAAAGAA
* * * * *
15814 TCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAAATAAAAAATAAA
373 TCAAAAAAT-AGAAAAAAAAAATT-AACTATAAAAAAATTTTCGAAAATAGAAATAAAAAATAAA
* * *
15879 TGGAAAAATAAATTAAGGGAAAAAAATTAAATAAAATACGAAAAAAGGAAAAAATAGAAAATTAG
436 T-GAAAAATAAA-TAAGGCAAAAAAATGAAATAAAATACGAAAAAAGAAAAAAATAGAAAATTAG
* * * * *
15944 CGAATCAAAAAAATATAAAAGGACAAAATGAAAGGACATAGAAAAAAGAAGAAAAATTTGAAAGG
499 CAAAACAAAAAAATATAAAA-GAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGG
*
16009 AGAAAAAGTCAATGAAAAATTGTAAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAA
563 AGAAAAAGTCAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAA
16074 AGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATAAAACTATAAACAAAGAAAGAAA
628 AGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATAAAACTATAAACAAAGAAAGAAA
* * * ** *
16139 ATAAAAAATAAATATAGAAAAAGAAAAAATACAATAAAAATATAAAAAGGACAAAAATTGAATA
693 ATAAAAAATAAATATAGAAAAAGAAAAAATACAACAAAAAAAGAAAAA-GACAAAAATACAAAA
* * **
16203 AAAATTTCAAAAATGAAATGGAATGACAAAATGAAAAAAAATAGTTTAAAAAATACAAAAAATTG
1 AAAATATCAAAAATGAAA-GGAATGACAAAAAGAAAAAAAATAGAATAAAAAATACAAAAAATTG
* * * * * * * * **
16268 AAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATTAAAAAAGAGAAAAGTTAATG
65 AAAAACATAT-AGACCAAAAAAAAAAAAAAGTCAAACAAAAAACTAAAAAAGACAAAAGTCAACA
* *
16333 CAAAATAAAAAAAGTATGAGAATTTAAAAACGCAAATAAGAAATGAAAGGAAATTTGTGGGGGAA
129 AAAAATAAAAAAAGTATGAGAATTTAAAAACGGAAATAAGAAATGAAAGGAAATTTGT--GGGAA
* * *
16398 AAAAAAAAGAAAAGCAAGAAAAGAATAAAAATGAAAAGAAAAAAGATTTGGAATAAAAAACAGAA
192 AAAAAATAGAATAGCAAGAAAAGAATAAAATTGAAAAG-AAAAAGATTTGGAATAAAAAACAGAA
** * * ***** ** * *
16463 AAATAAAAAATAGAAGAAAGTGCACA-AAAAAAAG-AAGTTTCAGGTTTTAAAATTATGAAAAAG
256 AAATAAAAAA-ATTA-AAA---CA-AGAAAAAATGAAAG-TACAGAAAAAAAAAACAAGAAAAGG
* ** * *
16526 -AAA---T-AA--AAAAAAGTGTGAACAAAAAGATT--TAAG-A-AAAAGCAAGAAAAAA-AAT-
314 AAAATTGTGAAGGGAAAAAGT-T-ATTAAAAA-ATTACAAAGTAGAAAA-AAAGAAAAAAGAATC
* *
16578 AAAAAAT-GAAAATAAAAAA-T-AC-ATAAAATAAATTTT-GAGAAA-AGGAA-GAAAAA-AAAT
375 AAAAAATAGAAAA-AAAAAATTAACTATAAAA-AAATTTTCGA-AAATAGAAATAAAAAATAAAT
* * * *
16635 -AAGAAATGAA-GAGGCAAAAATATGAAA-GAAA-A-G-AAAAAGAAAAAAATTTATAGAAAATT
437 GAA-AAATAAATAAGGCAAAAAAATGAAATAAAATACGAAAAAAG-AAAAAA---ATAGAAAATT
**
16694 -TTAAAACAAAGGAAAA-AGTTAACAA-AAAAAATGAAAGCACATAAAAAAAAAGAAGAAAAATT
497 AGCAAAACAAA--AAAATA--TAA-AAGAAAAAATGAAAGCACAT-AAAAAAAAGAAGAAAAATT
* * *
16756 TGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCGAGAATGATAAAA
556 TGAAAGGAGAAAAAGTCAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATAATAAAA
* *
16821 GAAAAGAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATGAAACTATAAACAAAG
621 GAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTTTATAAAAATTTATAAAACTATAAACAAAG
16886 AAAGAAAATAAAAAATAAA-A-AGAAAAAAGATAAATAA-AGCACACAAAAAAAGAAAAA-ACAA
686 AAAGAAAATAAAAAATAAATATAG-AAAAAGA-AAA-AATA-CA-ACAAAAAAAGAAAAAGACAA
16947 AAATACAACAA
746 AAATACAA-AA
* * * * * *
16958 AAAATAT-AAAAA-GTAA-GAATTTA-AAAAAGAGAGAAAAATTGAATAAAAATTTC-AAAAA-T
1 AAAATATCAAAAATGAAAGGAA-TGACAAAAAGA-AAAAAAATAGAATAAAAAATACAAAAAATT
* * * *
17017 GAAATAGA-AT-GA-CAAAAAAGAAAAAAATAGT-AAACATATAAGACCTAACAATA-ACAAAAG
64 GAAAAACATATAGACCAAAAAA-AAAAAAA-AGTCAAACA-A-AA-AACTAA-AAAAGACAAAAG
* *
17077 TCAGACAAAAAATAAAAAGAGTATGAGAATTTAAAAACGGAAATAAAAAATGAAAGGAAATTTGT
123 TCA-ACAAAAAATAAAAAAAGTATGAGAATTTAAAAACGGAAATAAGAAATGAAAGGAAATTTGT
*
17142 GGG-AAAAAAATAGAATAGCAAAAAAAGAATAAAATTGAAAAGACAAAAGATTTGGAATAAAAAA
187 GGGAAAAAAAATAGAATAGCAAGAAAAGAATAAAATTGAAAAGA-AAAAGATTTGGAATAAAAAA
*
17206 CAGAGAAATAAAAAAATTAAAACAAGAAAAAATGAAAGTACACGAAAAAAAAAACAAGAACAAGG
251 CAGAAAAATAAAAAAATTAAAACAAGAAAAAATGAAAGTACA-GAAAAAAAAAACAAGAA-AAGG
17271 AAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAA
314 AAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAA
17320 AATTGAACTT
Statistics
Matches: 933, Mismatches: 118, Indels: 152
0.78 0.10 0.13
Matches are distributed among these distances:
742 1 0.00
743 12 0.01
744 12 0.01
745 3 0.00
746 11 0.01
747 14 0.02
748 79 0.08
749 17 0.02
750 28 0.03
751 85 0.09
752 54 0.06
753 36 0.04
754 189 0.20
755 17 0.02
756 17 0.02
757 8 0.01
758 11 0.01
760 6 0.01
761 6 0.01
762 7 0.01
763 6 0.01
764 16 0.02
765 4 0.00
766 8 0.01
767 4 0.00
768 2 0.00
769 14 0.02
770 163 0.17
771 8 0.01
772 79 0.08
773 4 0.00
774 11 0.01
775 1 0.00
ACGTcount: A:0.65, C:0.05, G:0.13, T:0.17
Consensus pattern (755 bp):
AAAATATCAAAAATGAAAGGAATGACAAAAAGAAAAAAAATAGAATAAAAAATACAAAAAATTGA
AAAACATATAGACCAAAAAAAAAAAAAAGTCAAACAAAAAACTAAAAAAGACAAAAGTCAACAAA
AAATAAAAAAAGTATGAGAATTTAAAAACGGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAA
AATAGAATAGCAAGAAAAGAATAAAATTGAAAAGAAAAAGATTTGGAATAAAAAACAGAAAAATA
AAAAAATTAAAACAAGAAAAAATGAAAGTACAGAAAAAAAAAACAAGAAAAGGAAAATTGTGAAG
GGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAAGAAAAAAGAATCAAAAAATAGAAAAAAA
AAATTAACTATAAAAAAATTTTCGAAAATAGAAATAAAAAATAAATGAAAAATAAATAAGGCAAA
AAAATGAAATAAAATACGAAAAAAGAAAAAAATAGAAAATTAGCAAAACAAAAAAATATAAAAGA
AAAAATGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTCAATGAAAAATTAT
AAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCA
AAACTTTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAATAAAAAATAAATATAGAAAAAG
AAAAAATACAACAAAAAAAGAAAAAGACAAAAATACAAAA
Found at i:18014 original size:13 final size:13
Alignment explanation
Indices: 17981--18019 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
17971 ATAAACAAAG
17981 AAAGAAAATAAAA
1 AAAGAAAATAAAA
17994 AACA-AAAATAAAA
1 AA-AGAAAATAAAA
18007 AAAGAAAA-AAAA
1 AAAGAAAATAAAA
18019 A
1 A
18020 TGAAAGCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 6 0.25
13 17 0.71
14 1 0.04
ACGTcount: A:0.87, C:0.03, G:0.05, T:0.05
Consensus pattern (13 bp):
AAAGAAAATAAAA
Found at i:18983 original size:835 final size:819
Alignment explanation
Indices: 17822--19689 Score: 2676
Period size: 817 Copynumber: 2.2 Consensus size: 819
17812 AAGGAAAACG
*
17822 TGAAAGCACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
17886 TGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
*
17951 TTATAAAAATTTACGAAACTATAAACAAAGAAAGAAAATAAAAAACAAAAATAAAAAAAGAAAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAT----AA-AAAAAT--AAAAAG--AAA
*
18016 AAAATGAAAGCAAACGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACA
187 AAAATGAAAGCAAACGAAAAAAGATAAATAAAGCAC-----AAGAGAAAAAACAAAAAT------
*
18081 AAAAATATAAAAAGTAAGAAAATAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATG
241 ----ATATAAAAAGTAAGAAAAGAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATG
* *
18146 GAATGAC-AAAAGAGGAAAAGAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
302 GAATGACAAAAAGA-AAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTA
* *
18210 ACAATATAAAAAGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTAT
366 ACAATATAAAAAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTAT
18275 GAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCACGA
430 GAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAG--C--
*
18340 AAAGAATAAAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAAC
491 ----------AA-GAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAC
* * *
18404 AGCGAAAAAATTAAAGCAAG-AAAAATGAAAGTATATG-AAAAAAAAACAAGAAGAAGGAAAATT
545 AACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAAACAAGAAGAAGGAAAATT
18467 GTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAAATAAAAAAGATGCAAAAAATA
610 GTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAG--AAAAAAATAAAAAAGATGCAAAAAATA
18532 AG-AAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATAT-AA-AAAAAATAAATGAAAAAATA
673 AGAAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAAAAATAAATGAAAAAATA
* *
18594 AATTAAGGG-AAAAAATTAAAATAAACAAAAAGAAAAAAGTAACAAAGTAAGAAAATTTTAAAAC
738 AATTAAGGGAAAAAAATT-AAAT-AA-AAAAAGAAAAAAGGAA-AAAAT-AGAAAA--TT--AAC
*
18658 GAAGGAAAAAGTGAACA-AAAA-A-AAAA
794 GAAGCAAAAA---AACATAAAAGACAAAA
*
18684 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
18749 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
**
18814 TTATAAAAGCTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAA
18879 GC-AACAGAAAAAAGATAAATAAAGCAC-A-A-AAAAAA-AAAAAT-TATAAAAAGTAAGAAAAG
196 GCAAAC-GAAAAAAGATAAATAAAGCACAAGAGAAAAAACAAAAATATATAAAAAGTAAGAAAAG
* *
18938 AAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAA
260 AAAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAA
19003 TAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAA
324 TAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAA
*
19068 AATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAATTATGAGAATTTAAAAACAGAAATAAGA
389 AATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGA
*
19133 AATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATAAAA
454 AATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAA
* *
19198 AACAGAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGA
519 AACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATG-
*
19263 AAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAA
583 AAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAA
* *
19328 AAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATA
648 AAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATA
* * *
19393 TAAATAAAAAATAAATGGAAAAATAAATTAAGGGAAAAAAATTAAATAAAATACGAAAAAAGGAA
713 TAAATAAAAAATAAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAA
* * *
19458 AAAATAGAAAATTAGCGAATCAAAAAAATATAAAAGGACAAAA
778 AAAATAGAAAATTAACGAAGCAAAAAAACATAAAA-GACAAAA
* * * *
19501 TGAAAGGACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTCAATGAAAAATTGTAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* *
19566 TGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
*
19631 TTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAAT-AAAAAATAAATATAGAAAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAA-A-AGAAAAA
19690 GAAAAAATAC
Statistics
Matches: 942, Mismatches: 46, Indels: 80
0.88 0.04 0.07
Matches are distributed among these distances:
813 3 0.00
814 4 0.00
816 21 0.02
817 163 0.17
818 9 0.01
819 34 0.04
820 39 0.04
821 48 0.05
822 50 0.05
823 65 0.07
824 32 0.03
825 8 0.01
832 1 0.00
834 107 0.11
835 126 0.13
836 6 0.01
845 6 0.01
846 6 0.01
847 1 0.00
848 1 0.00
853 3 0.00
854 34 0.04
856 6 0.01
858 6 0.01
859 2 0.00
862 11 0.01
863 150 0.16
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (819 bp):
TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAA
GCAAACGAAAAAAGATAAATAAAGCACAAGAGAAAAAACAAAAATATATAAAAAGTAAGAAAAGA
AAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAATA
GTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAA
TGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAA
TGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAA
CAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAA
AAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAA
AATAAAAAAGATGCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAA
ATAAAAAATAAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAA
ATAGAAAATTAACGAAGCAAAAAAACATAAAAGACAAAA
Found at i:19248 original size:16 final size:17
Alignment explanation
Indices: 19217--19250 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
19207 ATAAAAAATT
*
19217 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
19234 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
19250 T
1 T
19251 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:19686 original size:20 final size:20
Alignment explanation
Indices: 19662--19715 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
19652 TAAACAAAGA
19662 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
19681 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
19703 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
19716 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:19690 original size:26 final size:26
Alignment explanation
Indices: 19661--19736 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
19651 ATAAACAAAG
*
19661 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
19687 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
19713 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
19737 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:19708 original size:28 final size:26
Alignment explanation
Indices: 19643--19736 Score: 80
Period size: 28 Copynumber: 3.3 Consensus size: 26
19633 ATAAAAATTT
*
19643 ATAAAACTATAAACAAAGAAAGAAAATAA
1 ATAAAAATATAAA-AAAG-AA-AAAATAA
*
19672 AAAATAAATATAGAAAAAGAAAAAATACA
1 ATAA-AAATATA-AAAAAGAAAAAATA-A
* *
19701 ATAAAAATATAAAAAGGACAAAAATTGA
1 ATAAAAATATAAAAAAGA-AAAAA-TAA
19729 ATAAAAAT
1 ATAAAAAT
19737 TTCAAAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 6 0.11
28 27 0.49
29 10 0.18
30 10 0.18
31 2 0.04
ACGTcount: A:0.72, C:0.04, G:0.07, T:0.16
Consensus pattern (26 bp):
ATAAAAATATAAAAAAGAAAAAATAA
Found at i:19956 original size:24 final size:22
Alignment explanation
Indices: 19929--19972 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
19919 TGGGGGAAAA
19929 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
19953 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
19973 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:20118 original size:13 final size:13
Alignment explanation
Indices: 20102--20126 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20092 AGCAAGAAAA
20102 AAAATAAAAAATG
1 AAAATAAAAAATG
20115 AAAATAAAAAAT
1 AAAATAAAAAAT
20127 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:20817 original size:16 final size:17
Alignment explanation
Indices: 20786--20819 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
20776 ATAAAAAATT
*
20786 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
20803 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
20819 T
1 T
20820 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:21584 original size:13 final size:13
Alignment explanation
Indices: 21566--21595 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
21556 ACAAAGAAAG
21566 AAAATAAAAAACA
1 AAAATAAAAAACA
*
21579 AAAATAAAAAAGA
1 AAAATAAAAAACA
21592 AAAA
1 AAAA
21596 AAATGAAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.87, C:0.03, G:0.03, T:0.07
Consensus pattern (13 bp):
AAAATAAAAAACA
Found at i:21651 original size:17 final size:17
Alignment explanation
Indices: 21629--21680 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
21619 TAAATAAAGC
*
21629 ACAAAAAAAGAGAAAAA
1 ACAAAAAAAGACAAAAA
21646 ACAAAAATACA-ACAAAAA
1 ACAAAAA-A-AGACAAAAA
*
21664 ATAAAAAAAGACAAAAA
1 ACAAAAAAAGACAAAAA
21681 TTGAATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
16 1 0.03
17 15 0.50
18 13 0.43
19 1 0.03
ACGTcount: A:0.81, C:0.10, G:0.06, T:0.04
Consensus pattern (17 bp):
ACAAAAAAAGACAAAAA
Found at i:22797 original size:16 final size:17
Alignment explanation
Indices: 22766--22799 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
22756 AATAAAAATT
*
22766 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
22783 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
22799 T
1 T
22800 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:23215 original size:20 final size:20
Alignment explanation
Indices: 23191--23244 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
23181 TAAACAAAGA
23191 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
23210 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
23232 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
23245 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:23219 original size:26 final size:26
Alignment explanation
Indices: 23190--23265 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
23180 ATAAACAAAG
*
23190 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
23216 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
23242 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
23266 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:23225 original size:28 final size:28
Alignment explanation
Indices: 23174--23254 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 28
23164 AAAAAATTCC
* *
23174 AAAACTATAAACAAAGAAAGAAAATA-AAA
1 AAAAATATAAA-AAAGACA-AAAATACAAA
*
23203 AATAAATATAGAAAAAGA-AAAAATACAAT
1 AA-AAATATA-AAAAAGACAAAAATACAAA
*
23232 AAAAATATAAAAAGGACAAAAAT
1 AAAAATATAAAAAAGACAAAAAT
23255 TGAATAAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
27 6 0.13
28 19 0.42
29 7 0.16
30 11 0.24
31 2 0.04
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (28 bp):
AAAAATATAAAAAAGACAAAAATACAAA
Found at i:23260 original size:28 final size:28
Alignment explanation
Indices: 23206--23265 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
23196 AATAAAAAAT
23206 AAATATAGAAAAAGAAAAAATACAATAA
1 AAATATAGAAAAAGAAAAAATACAATAA
* **
23234 AAATATA-AAAAGGACAAAAATTGAATAA
1 AAATATAGAAAAAGA-AAAAATACAATAA
23262 AAAT
1 AAAT
23266 TTCAAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.17
Consensus pattern (28 bp):
AAATATAGAAAAAGAAAAAATACAATAA
Found at i:23632 original size:13 final size:13
Alignment explanation
Indices: 23616--23640 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23606 AGCAAGAAAA
23616 AAAATAAAAAATG
1 AAAATAAAAAATG
23629 AAAATAAAAAAT
1 AAAATAAAAAAT
23641 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:23790 original size:719 final size:732
Alignment explanation
Indices: 22491--23898 Score: 1704
Period size: 749 Copynumber: 1.9 Consensus size: 732
22481 GTAAGAAAAG
*
22491 AAAAAGGACAAAATTTGAATATAAAATTTCAAAATGAAATGGAATGACAAAAGAAAAAAAAATAG
1 AAAAAGGACAAAAATTGAATATAAAATTTCAAAATGAAATGGAATGACAAAAGAAAAAAAAATAG
22556 TTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAAT
66 TTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAAT
*
22621 GAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAATTATGAGAATTTAAAAACAGAAATAAGAAAT
131 GAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAAT
* * * *
22686 GAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATAAAAAAC
196 GAAAGGAAATTTGTGGGAAAAAAAAAAGAAAAGCAAGAAAAGAAAAAAGATTTGGAATAAAAAAC
* *
22751 AGAAAAATAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAA
261 AGAAAAATAAAAA-TATAAAAGAAAGAAAAAA-TAAAACAAG-AAAAATGAAAGTA-ATGAAAAA
** * * *
22816 AAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAA
322 AAAAAACAAGAAGAAAAAAAAGTGTGAA-GCAAAAAGATATTAAAAAA-TACAAAGTAGAAAAAA
* * *
22881 ATAAAAAAGATTCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAAA
385 ATAAAAAAGATT-AAAAAAT-A-AAAAAAAAAATTGAA--TAATAAAACTTTTCGAAAATAGAAA
* * *
22946 TAAAAAATAAATGGAAGAATAAATTAAGGGAAAAAAATTAAATAAAATACGAAAAAAGGAAAAAA
445 TAAAAAATAAAT-GAAG-A-AAATGAAGGGAAAAAAATGAAATAAAATACGAAAAAAGAAAAAAA
* * * *
23011 TAGAAAATTAGCGAATCAAAAAAATATAAAAGGACAAAATGAAAGGACATAGAAAAAAGAAGAAA
507 TAGAAAATTA--GAAACAAAAAAATATAAAA-GAAAAAATGAAAGCACATAAAAAAAAGAAGAAA
*
23076 AATTTGAAAGGAGAAAAAGTCAATGAAAAATTGTAAAAATGCAATAGAAAATAACCAAGAATAAT
569 AATTTGAAAGGAGAAAAAGTCAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATAAT
*
23141 AAAAGAAAAAAAGGTAGAAAAATAAAAAATTCCAAAACTATAAACAAAGAAAGAAAATAAAAAAT
634 AAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTATAAACAAAGAAAGAAAATAAAAAAT
23206 AAATATAGAAAAAGAAAAAATACAATAAAAATAT
699 AAATATAGAAAAAGAAAAAATACAATAAAAATAT
23240 AAAAAGGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAATG-AAAAAAAAT
1 AAAAAGGACAAAAATTGAATATAAAATTTC-AAAATGAAATGGAATGACAAAA-GAAAAAAAAAT
23303 AGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAA
64 AGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAA
*
23368 ATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAAC-GCAAATAAGA
129 ATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAG-AAATAAGA
23432 AATGAAAGGAAATTTGTGGGGGAAAAAAAAAAGAAAAGCAAGAAAAGAAAAAAGATTTGGAATAA
193 AATGAAAGGAAATTTGT--GGGAAAAAAAAAAGAAAAGCAAGAAAAGAAAAAAGATTTGGAATAA
* ** * ** ** * * *
23497 AAAACAGAAAAATAAAAA-ATAGAAGAAAGTGCACAA-AAAA-AAG-AAGTTTCAGGT-TTTAAA
256 AAAACAGAAAAATAAAAATATAAAAGAAAG-AAAAAATAAAACAAGAAAAATGAAAGTAATGAAA
* ** *
23557 ATTATGAAA-AAGAAATAAAAAAAAGTGTGAA-CAAAAAGAT-TTAAGAAAA-AGC-AAG-A-AA
320 A-AAAAAAACAAG-AAGAAAAAAAAGTGTGAAGCAAAAAGATATTAA-AAAATA-CAAAGTAGAA
* * * *
23615 AAAAAT-AAAAA-A-T-GAAAAT-AAAAAATACA-T-AA-AAT-AAA-TTTT-GAGAAA-AGGAA
381 AAAAATAAAAAAGATTAAAAAATAAAAAAAAAAATTGAATAATAAAACTTTTCGA-AAATAGAAA
* * *
23668 -GAAAAA-AAAT-AAG-AAATGAAGAGGCAAAAATATGAAA-GAAA-A-G-AAAAAGAAAAAAAT
445 TAAAAAATAAATGAAGAAAATGAAG-GG-AAAAAAATGAAATAAAATACGAAAAAAG-AAAAAA-
23725 TTATAGAAAAATTTA-AAACAAAGGAAAA-AGTTAACAA-AAAAAATGAAAGCACATAAAAAAAA
506 --ATAG-AAAA-TTAGAAACAAA--AAAATA--TAA-AAGAAAAAATGAAAGCACAT-AAAAAAA
* *
23787 AGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAATGCAATAGAAAATAACCG
561 AGAAGAAAAATTTGAAAGGAGAAAAAGTCAATGAAAAATTATAAAAATGCAATAGAAAATAACCA
* *
23852 AGAATGATAAAAGAAAAGAAGATAGAAAAATAAAAAATTCCAAAACT
626 AGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
23899 TTATAAAAAT
Statistics
Matches: 582, Mismatches: 52, Indels: 80
0.82 0.07 0.11
Matches are distributed among these distances:
713 6 0.01
714 6 0.01
715 8 0.01
716 11 0.02
717 15 0.03
718 26 0.04
719 118 0.20
720 6 0.01
721 5 0.01
722 4 0.01
723 7 0.01
724 3 0.01
725 2 0.00
728 2 0.00
729 1 0.00
730 8 0.01
733 5 0.01
735 1 0.00
736 1 0.00
737 5 0.01
738 8 0.01
739 1 0.00
740 4 0.01
741 5 0.01
742 11 0.02
743 8 0.01
744 18 0.03
745 6 0.01
747 3 0.01
748 13 0.02
749 201 0.35
750 4 0.01
751 60 0.10
ACGTcount: A:0.65, C:0.05, G:0.14, T:0.17
Consensus pattern (732 bp):
AAAAAGGACAAAAATTGAATATAAAATTTCAAAATGAAATGGAATGACAAAAGAAAAAAAAATAG
TTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAAT
GAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAAT
GAAAGGAAATTTGTGGGAAAAAAAAAAGAAAAGCAAGAAAAGAAAAAAGATTTGGAATAAAAAAC
AGAAAAATAAAAATATAAAAGAAAGAAAAAATAAAACAAGAAAAATGAAAGTAATGAAAAAAAAA
AACAAGAAGAAAAAAAAGTGTGAAGCAAAAAGATATTAAAAAATACAAAGTAGAAAAAAATAAAA
AAGATTAAAAAATAAAAAAAAAAATTGAATAATAAAACTTTTCGAAAATAGAAATAAAAAATAAA
TGAAGAAAATGAAGGGAAAAAAATGAAATAAAATACGAAAAAAGAAAAAAATAGAAAATTAGAAA
CAAAAAAATATAAAAGAAAAAATGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAA
AGTCAATGAAAAATTATAAAAATGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAG
AAAAATAAAAAATTCCAAAACTATAAACAAAGAAAGAAAATAAAAAATAAATATAGAAAAAGAAA
AAATACAATAAAAATAT
Found at i:25044 original size:13 final size:13
Alignment explanation
Indices: 25026--25055 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25016 ACAAAGAAAG
25026 AAAATAAAAAACA
1 AAAATAAAAAACA
*
25039 AAAATAAAAAAGA
1 AAAATAAAAAACA
25052 AAAA
1 AAAA
25056 AAATGAAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.87, C:0.03, G:0.03, T:0.07
Consensus pattern (13 bp):
AAAATAAAAAACA
Found at i:25543 original size:31 final size:28
Alignment explanation
Indices: 25508--25573 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 28
25498 TTTTTTTATA
*
25508 TTTTTATTGTATTTATTTTTTCTATATTAAT
1 TTTTTATTGTATTT-TTTATT-TATA-TAAT
* *
25539 TTTTTATTTTCTTTTTTATTTATATAAT
1 TTTTTATTGTATTTTTTATTTATATAAT
25567 TTTTTAT
1 TTTTTAT
25574 AAATTTGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 11 0.34
29 4 0.12
30 5 0.16
31 12 0.38
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (28 bp):
TTTTTATTGTATTTTTTATTTATATAAT
Found at i:26208 original size:20 final size:20
Alignment explanation
Indices: 26172--26209 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26162 ACAGAAAAAT
*
26172 AAAAAATTTTAAAAAGAACG
1 AAAAAATTTAAAAAAGAACG
26192 AAAAAA-TTAAAACAAGAA
1 AAAAAATTTAAAA-AAGAA
26210 AAAATGAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.16
Consensus pattern (20 bp):
AAAAAATTTAAAAAAGAACG
Found at i:26298 original size:26 final size:25
Alignment explanation
Indices: 26269--26322 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
26259 AAAAGTTATT
*
26269 AAAAA-ATTACAAAGTAGAAAAAAATA
1 AAAAAGATT-CAAAATAGAAAAAAA-A
*
26295 AAAAAGATTCAAAATATAAAAAAAA
1 AAAAAGATTCAAAATAGAAAAAAAA
26320 AAA
1 AAA
26323 TTGAACTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.16
26 18 0.72
27 3 0.12
ACGTcount: A:0.76, C:0.04, G:0.06, T:0.15
Consensus pattern (25 bp):
AAAAAGATTCAAAATAGAAAAAAAA
Found at i:26653 original size:25 final size:24
Alignment explanation
Indices: 26599--26652 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 24
26589 ATAAACAAAG
26599 AAAAGAAAATAAAAATAAATATGAA
1 AAAAGAAAATAAAAATAAATAT-AA
26624 AAAAGAAAAATACAATAA-AAATATAA
1 AAAAG-AAAATA-AA-AATAAATATAA
26650 AAA
1 AAA
26653 GGACAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 5 0.19
26 11 0.42
27 8 0.31
28 2 0.08
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (24 bp):
AAAAGAAAATAAAAATAAATATAA
Found at i:27362 original size:21 final size:22
Alignment explanation
Indices: 27329--27370 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
27319 TTTATGAACT
27329 ATAAACAAGAAAGA-AAATAAA
1 ATAAACAAGAAAGATAAATAAA
27350 ATAAA-AAGAAAAGATAAATAA
1 ATAAACAAG-AAAGATAAATAA
27371 GCACACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 10 0.53
22 6 0.32
ACGTcount: A:0.76, C:0.02, G:0.10, T:0.12
Consensus pattern (22 bp):
ATAAACAAGAAAGATAAATAAA
Found at i:28406 original size:13 final size:13
Alignment explanation
Indices: 28388--28421 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
28378 ACAAAGAAAG
28388 AAAATAAAAAACA
1 AAAATAAAAAACA
*
28401 AAAATAAAAAAGA
1 AAAATAAAAAACA
28414 AAAA-AAAA
1 AAAATAAAA
28422 TGAAAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.88, C:0.03, G:0.03, T:0.06
Consensus pattern (13 bp):
AAAATAAAAAACA
Found at i:29372 original size:835 final size:816
Alignment explanation
Indices: 28212--30020 Score: 2091
Period size: 862 Copynumber: 2.2 Consensus size: 816
28202 GAAAATTTTA
** * * * *
28212 AAACAAAGGAAAAAGTGAAAGCACATAAAAAAAGAATAAAATTTGAAAGGAGAAAAAGTTAATGA
1 AAACAAAAAAAAAAATGAAAGCACATAAAAAAAGAAGAAAAATTGAAAGGAGAAAAAATTAATGA
* *
28277 AAAATTATAAAAAATGCAATAGAAAATAACTGAGAAATGATAAAAGAAAAAAGATAGAAAAATAA
66 AAAATTATAAAAAATCCAATAGAAAATAACCGAGAAATGATAAAAGAAAAAAGATAGAAAAATAA
* *
28342 AAAATTCCAAAACTTTATAAATTTACGAAACTATAAACAAAGAAAGAAAATAAAAAACAAAAATA
131 AAAATTCCAAAACTTTAAAAACTTACGAAACTATAAACAAAGAAAGAAAAT---AAACAAAAATA
28407 AAAAAGAAAAAAAAATGAAAGCAAACGAAAAAGGATAAATAAAGCACAAAAAGAGAGAAAAACAA
193 AAAAAG--AAAAAAATGAAAGCAAACGAAAAAGGATAAATAAAGCAC------A-AGAAAAACAA
*
28472 AAATACAACAAAAAATATAAAAGTAAGAAAATAAAAAAGAGACAAAAATTGGAATAAAAATTTCA
249 AAAT--------AAATATAAAAGTAAGAAAAGAAAAAAGAGACAAAAATTGGAATAAAAATTTCA
* *
28537 AAAATGAAATGGAATGAC-AAAAGAGGAAAAGAATAGTTTAAAAAATACAAAAAATTG-AAAACA
306 AAAATGAAATGGAATGACAAAAAGA-AAAAAAAATAGTTT-AAAAATAC-AAAAATTGAAAAACA
*
28600 TATAAGA-CT-ACAATATAAAAGTCATACAAAAAATTAAAAAAGAG-AAAAGTTAATGCAAAATA
368 TATAAGACCTAACAATATAAAAGTCAGAC-AAAAA-TAAAAAAGAGAAAAAGTTAATGCAAAAT-
28662 AAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGG-AAAAAAATA
430 -AAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATA
*
28726 GAATAGCACGAAAAGAATAAAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAAATAAAA
494 GAATAG--C------------AA-GAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAA
* * * *
28791 ATTTAAAAACAGCGAAAAAAATTAAAGC-AG-AAAAATGAAGAGT-AT-AATGAAAACACAAGAA
544 ATTTAAAAACAACG-AAAAAATTAAAACAAGAAAAAATGAA-AGTAATGAA-AAAAAAACAAGAA
*
28852 GAAGGAAATTGTGTAAGGG-AAAAGTTATTAAAAGATTACAAAGTAGAAAAAAATAAAAAAGATG
606 GAA-GAAATTGTG-AAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAAT-AAAAAGATG
28916 CAAAAAATAATGAAAAAAAAATTGAACCTTTATAAAA-ATTTCTAAAATCATACAA-AAAAATAA
668 CAAAAAATAA-G-AAAAAAAATTGAA-C-TTATAAAACATTTCTAAAAT-ATA-AATAAAAATAA
*
28979 ATGAAAAATTAAATTAAGGGAAAAATATTAAA-AATAAACGAAAAATGAAGAAAAGTAACAAAGT
727 ATGAAAAA-TAAATTAAGGGAAAAA-ATTAAATAA-AAACGAAAAAGGAA-AAAAGTAACAAAGT
29043 AAGAAAAGTTTAAACGAAGGAAAAAGCTG
788 AAGAAAAGTTTAAACGAAGGAAAAAGCTG
29072 AAACAAAAAAAAAAATGAAAGCCACATAAAAAAAAGAAGAAAAATTGAAAGGAGAAAAAATTAAT
1 AAACAAAAAAAAAAATGAAAG-CACAT-AAAAAAAGAAGAAAAATTGAAAGGAGAAAAAATTAAT
*
29137 GAAAAATTAT-AAAAATCCAATAG-AAATAACCGATG-AATGATAAACA-AAACAAGATAGAAAA
64 GAAAAATTATAAAAAATCCAATAGAAAATAACCGA-GAAATGATAAA-AGAAAAAAGATAGAAAA
*
29198 ATACAAAAAATT-CAAAACTTTAAAAAGCTTATGAAACTATAAACAAAGAAAGAAAAT-AA-AAA
127 AT--AAAAAATTCCAAAACTTTAAAAA-CTTACGAAACTATAAACAAAGAAAGAAAATAAACAAA
* * * *
29260 AATAAGATAAG-AAAACATGCAAGCAAGCAGAAAAAAGGATAAAT-AAGCAC-A-AAAAAC-AAA
189 AATAA-AAAAGAAAAAAATGAAAGCAAAC-G-AAAAAGGATAAATAAAGCACAAGAAAAACAAAA
* *
29320 AT-TATA-AAAAGTAAGAAAAGAAAAAAG-GAC-AAAATTTGAATATAAAATTTCAAAAATGAAA
251 ATAAATATAAAAGTAAGAAAAGAAAAAAGAGACAAAAATTGGAATA-AAAATTTCAAAAATGAAA
29381 TGGAATGACAAAAAGAAAAAAAAATAGTTTAAAAATACAAAAATTGAAAAACATATAAGACCTAA
315 TGGAATGACAAAAAGAAAAAAAAATAGTTTAAAAATACAAAAATTGAAAAACATATAAGACCTAA
* *
29446 CAATATAAAAGTCAGACAAAAATGAAAAAGAGAAAAAGTTAATGCAAAATAAAAAATTATGAGAA
380 CAATATAAAAGTCAGACAAAAATAAAAAAGAGAAAAAGTTAATGCAAAATAAAAAAGTATGAGAA
29511 TTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGA
445 TTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGA
* * * *
29576 CAAAAGCTTTGGAATAAAAAACAGAAAAATAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGA
510 CAAAAGATTTGGAATAAAAAACAAAAAAATAAAAATTTAAAAACAACGAAAAAATTAAAACAAGA
29641 AAAAATGAAAGTAGATGAAAAAAAAACAAGAAGAAGAAATTGTGAAGGGAAAAAGTTATTAAAAA
575 AAAAATGAAAGTA-ATGAAAAAAAAACAAGAAGAAGAAATTGTGAAGGGAAAAAGTTATTAAAAA
* *
29706 ATTACAAAGTAGAAAAAAATAAAAAGATTCAAAAAATAAGAAAAAAAATTGAACTTATAAAACTT
639 ATTACAAAGTAGAAAAAAATAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTATAAAACAT
* *
29771 TTCTAAAATATAAATAAAAATAAATGGAAAATAAATTAAGGGAAAAAATTAAATAAATACGAAAA
704 TTCTAAAATATAAATAAAAATAAATGAAAAATAAATTAAGGGAAAAAATTAAATAAAAACGAAAA
* * *
29836 AGGAAAAAA-TAGA-AAA-TTAG---CG---AATC-AA--AAAAA--T-
769 AGGAAAAAAGTA-ACAAAGTAAGAAAAGTTTAAACGAAGGAAAAAGCTG
* ** * * * * *
29870 ATA-AAAGGACAAAATGAAAGGACATAGAAAAAGAAGAAAAATTTTGAAAGGAGAAAAAGTCAAT
1 AAACAAAAAAAAAAATGAAAGCACATAAAAAAAGAAGAAAAA--TTGAAAGGAGAAAAAATTAAT
* * * * *
29934 G-AAAATTGT-AAAAATGCAATAG-AAATAACCAAG-AATAATAAAAGAAAAAAAGGTAGAAAAA
64 GAAAAATTATAAAAAATCCAATAGAAAATAACCGAGAAATGATAAAAG-AAAAAAGATAGAAAAA
29995 TAAAAAATTCCAAAAAC-TTAAAAACT
128 TAAAAAATTCC-AAAACTTTAAAAACT
30021 ATAACAAAGA
Statistics
Matches: 860, Mismatches: 56, Indels: 132
0.82 0.05 0.13
Matches are distributed among these distances:
794 11 0.01
795 32 0.04
796 52 0.06
797 34 0.04
798 2 0.00
799 1 0.00
801 5 0.01
803 2 0.00
804 3 0.00
807 1 0.00
810 3 0.00
811 5 0.01
812 5 0.01
813 18 0.02
814 20 0.02
815 26 0.03
816 11 0.01
817 13 0.02
818 13 0.02
819 77 0.09
820 54 0.06
821 16 0.02
822 2 0.00
832 1 0.00
833 61 0.07
834 56 0.07
835 66 0.08
836 43 0.05
837 3 0.00
846 5 0.01
847 6 0.01
848 1 0.00
855 14 0.02
856 7 0.01
857 21 0.02
858 6 0.01
860 52 0.06
861 32 0.04
862 80 0.09
ACGTcount: A:0.64, C:0.06, G:0.13, T:0.17
Consensus pattern (816 bp):
AAACAAAAAAAAAAATGAAAGCACATAAAAAAAGAAGAAAAATTGAAAGGAGAAAAAATTAATGA
AAAATTATAAAAAATCCAATAGAAAATAACCGAGAAATGATAAAAGAAAAAAGATAGAAAAATAA
AAAATTCCAAAACTTTAAAAACTTACGAAACTATAAACAAAGAAAGAAAATAAACAAAAATAAAA
AAGAAAAAAATGAAAGCAAACGAAAAAGGATAAATAAAGCACAAGAAAAACAAAAATAAATATAA
AAGTAAGAAAAGAAAAAAGAGACAAAAATTGGAATAAAAATTTCAAAAATGAAATGGAATGACAA
AAAGAAAAAAAAATAGTTTAAAAATACAAAAATTGAAAAACATATAAGACCTAACAATATAAAAG
TCAGACAAAAATAAAAAAGAGAAAAAGTTAATGCAAAATAAAAAAGTATGAGAATTTAAAAACAG
AAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTG
GAATAAAAAACAAAAAAATAAAAATTTAAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAG
TAATGAAAAAAAAACAAGAAGAAGAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAG
AAAAAAATAAAAAGATGCAAAAAATAAGAAAAAAAATTGAACTTATAAAACATTTCTAAAATATA
AATAAAAATAAATGAAAAATAAATTAAGGGAAAAAATTAAATAAAAACGAAAAAGGAAAAAAGTA
ACAAAGTAAGAAAAGTTTAAACGAAGGAAAAAGCTG
Found at i:29644 original size:16 final size:17
Alignment explanation
Indices: 29613--29646 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
29603 AATAAAAATT
*
29613 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
29630 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
29646 T
1 T
29647 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:30055 original size:20 final size:20
Alignment explanation
Indices: 30031--30084 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
30021 ATAACAAAGA
30031 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
*
30050 ATAGAAAAAGAAAAAATACAAT
1 A-AG-AAAATAAAAAATACAAT
30072 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
30085 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 4 0.14
20 8 0.28
21 13 0.45
22 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:30059 original size:26 final size:26
Alignment explanation
Indices: 30030--30105 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
30020 TATAACAAAG
*
30030 AAAGAAAATAA-AAAATAAATATAGAA
1 AAAGAAAA-AATAAAATAAAAATAGAA
* *
30056 AAAGAAAAAATACAATAAAAATATAA
1 AAAGAAAAAATAAAATAAAAATAGAA
**
30082 AAAGGACAAAAATTGAATAAAAAT
1 AAA-GA-AAAAATAAAATAAAAAT
30106 TTCAAAAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 2 0.05
26 23 0.55
27 2 0.05
28 15 0.36
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAGAAAAAATAAAATAAAAATAGAA
Found at i:30077 original size:28 final size:28
Alignment explanation
Indices: 30013--30105 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 28
30003 TCCAAAAACT
* *
30013 TAAAAACTATAACAAAGAAAGAAAATA-AA
1 TAAAAA-TATAAAAAAGACA-AAAATACAA
*
30042 AAATAAATATAGAAAAAGA-AAAAATACAA
1 TAA-AAATATA-AAAAAGACAAAAATACAA
* **
30071 TAAAAATATAAAAAGGACAAAAATTGAA
1 TAAAAATATAAAAAAGACAAAAATACAA
30099 TAAAAAT
1 TAAAAAT
30106 TTCAAAAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
27 6 0.11
28 28 0.52
29 11 0.20
30 9 0.17
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (28 bp):
TAAAAATATAAAAAAGACAAAAATACAA
Found at i:33084 original size:16 final size:17
Alignment explanation
Indices: 33053--33086 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
33043 ATAAAAAATT
*
33053 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
33070 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
33086 T
1 T
33087 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:33516 original size:20 final size:20
Alignment explanation
Indices: 33492--33544 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
33482 TAAACAAAGA
33492 AAGAAAATAAAAAATA-AAT
1 AAGAAAATAAAAAATACAAT
33511 ATAGAAAA-AGAAAAATACAAT
1 A-AGAAAATA-AAAAATACAAT
33532 AA-AAATATAAAAA
1 AAGAAA-ATAAAAA
33545 GGACAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
19 5 0.17
20 19 0.66
21 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.06, T:0.15
Consensus pattern (20 bp):
AAGAAAATAAAAAATACAAT
Found at i:33525 original size:27 final size:25
Alignment explanation
Indices: 33491--33544 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
33481 ATAAACAAAG
33491 AAAGAAAATA-AAAAATAAATATAGAA
1 AAAGAAAATACAAAAA-AAATATA-AA
*
33517 AAAGAAAAATACAATAAAAATATAAA
1 AAAG-AAAATACAAAAAAAATATAAA
33543 AA
1 AA
33545 GGACAAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 8 0.32
27 13 0.52
28 4 0.16
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.15
Consensus pattern (25 bp):
AAAGAAAATACAAAAAAAATATAAA
Found at i:33943 original size:13 final size:13
Alignment explanation
Indices: 33927--33951 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33917 AAGCAAGAAA
33927 AAAATAAAAAATG
1 AAAATAAAAAATG
33940 AAAATAAAAAAT
1 AAAATAAAAAAT
33952 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:34120 original size:18 final size:20
Alignment explanation
Indices: 34093--34134 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
34083 CACATAAAAA
34093 AAAAGAAGAA-AAAATT-TG
1 AAAAGAAGAACAAAATTATG
* *
34111 AAAAGGAGAACAAAGTTATG
1 AAAAGAAGAACAAAATTATG
34131 AAAA
1 AAAA
34135 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 9 0.45
19 5 0.25
20 6 0.30
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.14
Consensus pattern (20 bp):
AAAAGAAGAACAAAATTATG
Found at i:34932 original size:11 final size:11
Alignment explanation
Indices: 34895--34938 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
34885 TGAAAAATTG
34895 AAAAATAAAAT
1 AAAAATAAAAT
*
34906 AAAAGTTAATAA-
1 AAAA-ATAA-AAT
34918 AAAAATAAAAT
1 AAAAATAAAAT
34929 AAAAATAAAA
1 AAAAATAAAA
34939 GAAGTTTGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 2 0.07
11 17 0.61
12 7 0.25
13 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:35350 original size:29 final size:29
Alignment explanation
Indices: 35318--35374 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
35308 TTACGAAACT
* *
35318 ATAAACAAAGAAAGAAAATAAAAACAAAA
1 ATAAAAAAAGAAAAAAAATAAAAACAAAA
* *
35347 ATAAAAAAAGAAAAAAAATGAAAGCAAA
1 ATAAAAAAAGAAAAAAAATAAAAACAAA
35375 CGAAAAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.79, C:0.05, G:0.09, T:0.07
Consensus pattern (29 bp):
ATAAAAAAAGAAAAAAAATAAAAACAAAA
Found at i:36207 original size:14 final size:14
Alignment explanation
Indices: 36185--36214 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36175 ACAAAGAAAG
*
36185 AAAATAAAAAAATA
1 AAAAGAAAAAAATA
36199 AAAAGAAAAAAATA
1 AAAAGAAAAAAATA
36213 AA
1 AA
36215 GCAACAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (14 bp):
AAAAGAAAAAAATA
Found at i:36225 original size:23 final size:22
Alignment explanation
Indices: 36198--36255 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
36188 ATAAAAAAAT
36198 AAAAAGAA-AAAAATAAAGCAAC
1 AAAAA-AACAAAAATAAAGCAAC
* *
36220 AGAAAAAAGATAAATAAAGC-AC
1 A-AAAAAACAAAAATAAAGCAAC
36242 AAAAAAACAAAAAT
1 AAAAAAACAAAAAT
36256 TAATATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 11 0.35
22 6 0.19
23 14 0.45
ACGTcount: A:0.76, C:0.09, G:0.09, T:0.07
Consensus pattern (22 bp):
AAAAAAACAAAAATAAAGCAAC
Found at i:37009 original size:28 final size:27
Alignment explanation
Indices: 36973--37062 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 27
36963 AAAAAATTCC
*
36973 AAAACTATAAACAAAGAAAGAAATA-AA-
1 AAAAATATAAA-AAAGAAA-AAATACAAT
37000 AATAAATATAGAAAAAGAAAAAATACAAT
1 AA-AAATATA-AAAAAGAAAAAATACAAT
* **
37029 AAAAATATAAAAAGGACAAAAATTGAAT
1 AAAAATATAAAAAAGA-AAAAATACAAT
37057 AAAAAT
1 AAAAAT
37063 TTCAAAAATG
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
27 13 0.24
28 37 0.69
29 4 0.07
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (27 bp):
AAAAATATAAAAAAGAAAAAATACAAT
Found at i:37282 original size:24 final size:22
Alignment explanation
Indices: 37255--37298 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
37245 TGGGGGAAAA
37255 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
37279 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
37299 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:37754 original size:16 final size:17
Alignment explanation
Indices: 37727--37769 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
37717 TTATGAAACT
37727 ATAAACAAAGAAAGAAA-
1 ATAAACAAAGAAA-AAAG
37744 ATAAA-AAAGAAAAAAG
1 ATAAACAAAGAAAAAAG
*
37760 ATAAATAAAG
1 ATAAACAAAG
37770 CACACAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 3 0.12
16 12 0.50
17 9 0.38
ACGTcount: A:0.77, C:0.02, G:0.12, T:0.09
Consensus pattern (17 bp):
ATAAACAAAGAAAAAAG
Found at i:38862 original size:13 final size:14
Alignment explanation
Indices: 38842--38884 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 14
38832 AAACAAAGAA
38842 AGAAAATAAAAAAC
1 AGAAAATAAAAAAC
38856 A-AAAATAAAAAA-
1 AGAAAATAAAAAAC
38868 AGAAAA-AAAAAAC
1 AGAAAATAAAAAAC
38881 -GAAA
1 AGAAA
38885 GCAAACGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 11 0.41
13 15 0.56
14 1 0.04
ACGTcount: A:0.84, C:0.05, G:0.07, T:0.05
Consensus pattern (14 bp):
AGAAAATAAAAAAC
Found at i:39872 original size:829 final size:814
Alignment explanation
Indices: 38681--40528 Score: 2614
Period size: 815 Copynumber: 2.2 Consensus size: 814
38671 AAGGAAAACG
*
38681 TGAAAGCACATAAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
1 TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
*
38746 GCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
66 GCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
*
38811 TATAAAAATTTACGAAACTATAAACAAAGAAAGAAAATAAAAAACAAAAATAAAAAAAGAAAAAA
131 TATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAT----AA-AAAAAT-AAAAAAG--AAAA
*
38876 AAAACGAAAGCAAACGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACA
188 AAAACGAAAGCAAACGAAAAAAGATAAATAAAGCAC--------A-AAAAAACAAAAAT------
*
38941 AAAAATATAAAAAGTAAGAAAATAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATG
238 ----ATATAAAAAGTAAGAAAAGAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATG
* * *
39006 GAATGACAAAAGAGGAAAAGAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
299 GAATGACAAAAGAGAAAAAAAATAGTTAAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
* *
39071 CAATATAAAAAGTCATACAAAAAATTAAAAAAGAG-AAAGTTAATGCAAAATAAAAAAAAGTATG
364 CAATATAAAAAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTATG
39135 AGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGG-AAAAAAAATAGAATAGCACGA
428 AGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAG--C--
*
39199 AAAGAATAAAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAAC
489 ----------AA-GAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAC
* * *
39263 AGCGAAAAAATTAAAGCAAG-AAAAATGAAAGTATATG-AAAAAAAACAAGAAGAAGGAAAATTG
543 AACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTG
39326 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAG
608 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAG-AAAAAAATAAAAAAGATGC-AAAAATAAG
39391 -AAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAA-AAAAAATAAATGAAAAAATAAAT
671 AAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAAAAATAAATGAAAAAATAAAT
* *
39454 TAAGGG-AAAAAATTAAAATAAACAAAAAGAAAAAAGTAACAAAGTAAGAAAATTTTAAAACGAA
736 TAAGGGAAAAAAATT-AAAT-AA-AAAAAGAAAAAAGGAA-AAAAT-AGAAAA--TT--AACGAA
** *
39518 -GGAAAAAGTGA-ACAAA-AAAAAA
792 TCAAAAAAAT-ATA-AAAGAAAAAA
*
39540 TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAAT
1 TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
*
39605 GCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACTT
66 GCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
* *
39670 TATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAAT-AAAAAG-AAAAAAATGAA
131 TATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAAGAAAAAAAACGAA
39733 AGC-AACAGAAAAAAGATAAATAAAGCAC-AAAAAACAAAAAT-TATAAAAAGTAAGAAAAGAAA
196 AGCAAAC-GAAAAAAGATAAATAAAGCACAAAAAAACAAAAATATATAAAAAGTAAGAAAAGAAA
* *
39795 AAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAA-AGAAAAAAAAATA
260 AAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAGAG-AAAAAAAATA
39859 GTTAAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAA
323 GTTAAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAA
*
39924 TGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAATTATGAGAATTTAAAAACAGAAATAAGAAA
388 TGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAA
*
39989 TGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATAAAAA
453 TGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAA
* *
40054 ACAGAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAA
518 ACAAAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATG--
*
40119 AAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAA
581 AAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAA
* *
40184 AAAATAAAAAAGATTCAAAAATAAGAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAA
646 AAAATAAAAAAGATGCAAAAATAAGAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAA
* * *
40249 ATAAAAAATAAATGGAAAAATAAATTAAGGGAAAAAAATTAAATAAAATACGAAAAAAGGAAAAA
711 ATAAAAAATAAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAA
* *
40314 ATAGAAAATTAGCGAATCAAAAAAATATAAAAGGACAAAA
776 ATAGAAAATTAACGAATCAAAAAAATATAAAA-GAAAAAA
* * *
40354 TGAAAGGACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTCAATGAAAAATTGTAAAAA
1 TGAAAGCACATA-AAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* *
40419 TGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
65 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* *
40484 TTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAAGAAAAAA
130 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAA
40529 TACAATAAAA
Statistics
Matches: 924, Mismatches: 47, Indels: 80
0.88 0.04 0.08
Matches are distributed among these distances:
812 9 0.01
813 7 0.01
814 18 0.02
815 187 0.20
816 39 0.04
817 20 0.02
818 22 0.02
819 59 0.06
820 92 0.10
821 8 0.01
828 40 0.04
829 166 0.18
830 32 0.03
839 13 0.01
848 3 0.00
849 33 0.04
852 6 0.01
854 6 0.01
855 2 0.00
859 162 0.18
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (814 bp):
TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
GCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
TATAAAAATTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAAGAAAAAAAACGAA
AGCAAACGAAAAAAGATAAATAAAGCACAAAAAAACAAAAATATATAAAAAGTAAGAAAAGAAAA
AAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAGAGAAAAAAAATAGTT
AAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGA
AAAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGA
AAGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACA
AAAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAA
AAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAT
AAAAAAGATGCAAAAATAAGAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAA
AAATAAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAAATAGA
AAATTAACGAATCAAAAAAATATAAAAGAAAAAA
Found at i:40103 original size:16 final size:17
Alignment explanation
Indices: 40072--40105 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
40062 ATAAAAAATT
*
40072 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
40089 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
40105 T
1 T
40106 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:40788 original size:24 final size:22
Alignment explanation
Indices: 40761--40804 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
40751 TGGGGGAAAA
40761 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
40785 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
40805 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:43215 original size:832 final size:814
Alignment explanation
Indices: 42192--44041 Score: 2592
Period size: 818 Copynumber: 2.2 Consensus size: 814
42182 AAGGAAAACG
*
42192 TGAAAGCACAT-AAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
42256 TGCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* * * *
42321 TTATAAAAATTTACGAAACTATAAACAAAGAAAGAAAATAAAAAACAAAAATAAAAAAAGAAAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAA-AAAAAA-AAGAA-AAAGAAA-AAAAT
* *
42386 AAAACGAAAGCAAACGAAAAAGGATAAATAAAGCACAAAAAAGAGAAAAACAAAAATACAACAAA
192 GAAA-GAAA-C--AC-AAAAAAGATAAATAAAG--C-------------AC-AAAA-A-AACAAA
*
42451 AAATATAAAAAGTAAGAAAATAAAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGG
234 AAATATAAAAAGTAAGAAAAGAAAAAAAGACAAAAATTGAATATAAAATTTCAAAAATGAAATGG
* * *
42515 AATGAC-AAAAGAGGAAAAGAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
299 AATGACAAAAAGA-AAAAAAAATAGTTAAAAAAATACAAAAAATTGAAAAACATATAAGACCTAA
* *
42579 CAATATAAAAAGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATG
363 CAATATAAAAAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAAGTATG
42644 AGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGG-AAAAAAAATAGAATAGCACGA
427 AGAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAG--C--
*
42708 AAAGAATAAAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAAAT-AAAAATTTTAAAAC
488 ----------AA-GAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAAATTTTAAAAC
* * *
42772 AGCGAAAAAATTAAAGCAAG-AAAAATGAAAGTATATG-AAAAAAAACAAGAAGAAGGAAAATTG
542 AACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAAAAACAAGAAGAAGGAAAATTG
42835 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAG
607 TGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAG-AAAAAAATAAAAAAGATGCAAAAAATAAG
42900 -AAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAA-AAAAAATAAATGAAAAAATAAAT
671 AAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAAAAATAAATGAAAAAATAAAT
* *
42963 TAAGGG-AAAAAATTAAAATAAACAAAAAGAAAAAAGTAACAAAGTAAGAAAATTTTAAAACGAA
736 TAAGGGAAAAAAATT-AAAT-AA-AAAAAGAAAAAAGGAA-AAAAT-AGAAAA--TT--AACGAA
** *
43027 -GGAAAAAGTGA-ACAAA-AAAAAA
792 TCAAAAAAAT-ATA-AAAGAAAAAA
*
43049 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
43114 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* * *
43179 TTATAAAAACTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAGAAAAAAATGAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAAGAAAAAGAAAAAAATGAAA
* * *
43244 GCAACAGAAAAAAGATAAATAAAGCACAAAAAAACAAAAATTATAAAAAGTAAGAAAAGAAAAAA
196 GAAACACAAAAAAGATAAATAAAGCACAAAAAAACAAAAAATATAAAAAGTAAGAAAAGAAAAAA
* *
43309 GGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAATAGTTA
261 AGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAATAGTTA
43374 AAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAA
326 AAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAA
*
43439 AAAAGAGAAAAGTTAATGCAAAATAAAAAAATTATGAGAATTTAAAAACAGAAATAAGAAATGAA
391 AAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAA
* *
43504 AGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGCTTTGGAATAAAAAACAG
456 AGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACAA
*
43569 AAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAA
521 AAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATG--AAAA
*
43634 AAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGTAGAAAAAAA
584 AAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAA
* *
43699 TAAAAAAGATTCAAAAAATAAGAAAAAAAAAATTGAACTTTATAAAACTTTTCTAAAATATAAAT
649 TAAAAAAGATGCAAAAAATAAG-AAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAAT
* * *
43764 AAAAAATAAATGGAAAAATAAATTAAGGGAAAAAAATTAAATAAAATACGAAAAAAGGAAAAAAT
713 AAAAAATAAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAAAT
* *
43829 AGAAAATTAGCGAATCAAAAAAATATAAAAGGACAAAA
778 AGAAAATTAACGAATCAAAAAAATATAAAA-GAAAAAA
* * * *
43867 TGAAAGGACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTCAATGAAAAATTGTAAAAA
1 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* *
43932 TGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
66 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* *
43997 TTATAAAAATTTATAAAACTATAAACAAAGAAAGAAAAGAAAAAA
131 TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAA
44042 TACAATAAAA
Statistics
Matches: 921, Mismatches: 55, Indels: 73
0.88 0.05 0.07
Matches are distributed among these distances:
816 9 0.01
817 41 0.04
818 204 0.22
819 16 0.02
820 6 0.01
821 32 0.03
822 73 0.08
823 41 0.04
824 32 0.03
825 8 0.01
830 1 0.00
831 99 0.11
832 142 0.15
833 10 0.01
834 2 0.00
847 1 0.00
849 16 0.02
850 1 0.00
852 1 0.00
853 3 0.00
854 7 0.01
855 6 0.01
856 4 0.00
857 16 0.02
858 150 0.16
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (814 bp):
TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
TTATAAAAATTTATGAAACTATAAACAAAGAAAGAAAAAAAAAAAAGAAAAAGAAAAAAATGAAA
GAAACACAAAAAAGATAAATAAAGCACAAAAAAACAAAAAATATAAAAAGTAAGAAAAGAAAAAA
AGACAAAAATTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAAAGAAAAAAAAATAGTTA
AAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATGAA
AAAAGAGAAAAGTTAATGCAAAATAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAATGAA
AGGAAATTTGTGGGAAAAAAAAATAGAATAGCAAGAAAAGACAAAAGATTTGGAATAAAAAACAA
AAAAATAAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAAATGAAAGTAGATGAAAAAA
AAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAATA
AAAAAGATGCAAAAAATAAGAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAATAAA
AAATAAATGAAAAAATAAATTAAGGGAAAAAAATTAAATAAAAAAAGAAAAAAGGAAAAAATAGA
AAATTAACGAATCAAAAAAATATAAAAGAAAAAA
Found at i:43614 original size:16 final size:17
Alignment explanation
Indices: 43583--43616 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
43573 ATAAAAAATT
*
43583 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
43600 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
43616 T
1 T
43617 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:44301 original size:24 final size:22
Alignment explanation
Indices: 44274--44317 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
44264 TGGGGGAAAA
44274 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
44298 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
44318 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:45894 original size:12 final size:13
Alignment explanation
Indices: 45875--45916 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 13
45865 AAACAAAGAA
45875 AGAAAATAAAAAC
1 AGAAAATAAAAAC
*
45888 A-AAAATAAAAAA
1 AGAAAATAAAAAC
*
45900 AGAAAAAAAAAAC
1 AGAAAATAAAAAC
45913 -GAAA
1 AGAAA
45917 GCAAACGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.83, C:0.05, G:0.07, T:0.05
Consensus pattern (13 bp):
AGAAAATAAAAAC
Found at i:47138 original size:16 final size:17
Alignment explanation
Indices: 47107--47140 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
47097 ATAAAAAATT
*
47107 TTAAAAGAACGAAAAAA
1 TTAAAACAACGAAAAAA
47124 TTAAAACAA-GAAAAAA
1 TTAAAACAACGAAAAAA
47140 T
1 T
47141 GAAAGTAGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.71, C:0.06, G:0.09, T:0.15
Consensus pattern (17 bp):
TTAAAACAACGAAAAAA
Found at i:47520 original size:816 final size:821
Alignment explanation
Indices: 45714--47562 Score: 2621
Period size: 816 Copynumber: 2.2 Consensus size: 821
45704 AAGGAAAACG
*
45714 TGAAAGCACATAAAAAAAGAATAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
1 TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
*
45779 GCAATAGAAAATAACTGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
66 GCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
45844 TATAAAAATTTACGAAACTATAAACAAAGAAAGAAAATAAAAACAAAAATAAAAAAAGAAAAAAA
131 TATAAAAATTTA-GAAACTATAAACAAAGAAAGAAAAT---AA-AAAAAT-AAAAAAG--AAAAA
*
45909 AAACGAAAGCAAACGAAAAAGGATAAATAAAGCACAAAAAAAGAGAAAAAACAAAAATACAACAA
188 AAACGAAAGCAAACGAAAAAAGATAAATAAAGCAC------A-AGAAAAAACAAAAAT-------
*
45974 AAAATATAAAAAGTAAGAAAATAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGG
239 ---ATATAAAAAGTAAGAAAAGAAAAAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGG
* *
46039 AATGACAAAAGAGGAAAAGAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAAC
301 AATGACAAAAGAGAAAAAAAATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAAC
* *
46104 AATATAAAAAGTCATACAAAAAATTAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGA
366 AATATAAAAAGTCAGACAAAAAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGA
46169 GAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGCACGAA
431 GAATTTAAAAACAGAAATAAGAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAG-AC---
* *
46234 AAGAATAAAAATGAAAAGACAAAATATTTGGAATAAAAAACAAAAAAATAAAAATTTTAAAACAG
492 --------AAATGAAAAGACAAAAGATTTGGAATAAAAAACAAAAAAATAAAAATTTTAAAACAA
* *
46299 CGAAAAAATTAAAGCAAGAAAAATGAAAGTATATGAAAAAAAACAAGAAGAAGGAAAATTGTGAA
549 CGAAAAAATTAAAACAAGAAAAATGAAAGTAGATGAAAAAAAACAAGAAGAAGGAAAATTGTGAA
46364 GGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAA
614 GGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAA
46429 AAAAATTGAACTTTATAAAAATTTTCTAAAATATAAAAAAAATAAATGAAAAAATAAATTAAGGG
679 AAAAATTGAACTTTATAAAAATTTTCTAAAATATAAAAAAAATAAATGAAAAAATAAATTAAGGG
* * **
46494 AAAAAATTAAAATAAACAAAAAGAAAAAAGTAACAAAGTAAGAAAATTTTAAAACGAAGGAAAAA
744 AAAAAATTAAAATAAACAAAAAGAAAAAAGGAACAAAATAAGAAAA-TTT-AAACGAACAAAAAA
*
46559 GTGAACAAAAAAAAA
807 ATGAACAAAAAAAAA
*
46574 TGAAAGCACATAAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAATTAATGAAAAATTATAAAAA
1 TGAAAGCACAT-AAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
*
46639 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAACAAGATAGAAAAATAAAAAATTCCAAAACT
65 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
** *
46704 TTATAAAAGCTTATGAAACTATAAACAAAGAAAGAAAATAAAAAAAT-AAAAAG-AAAAAAATGA
130 TTATAAAAATTTA-GAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAAGAAAAAAAACGA
46767 AAGC-AACAGAAAAAAGATAAATAAAGCAC-A-AAAAAACAAAAAT-TATAAAAAGTAAGAAAAG
194 AAGCAAAC-GAAAAAAGATAAATAAAGCACAAGAAAAAACAAAAATATATAAAAAGTAAGAAAAG
* *
46828 AAAAAAGGACAAAATTTGAATATAAAATTTCAAAAATGAAATGGAATGACAAAA-AGAAAAAAAA
258 AAAAAAAGACAAAAATTGAATA-AAAATTTCAAAAATGAAATGGAATGACAAAAGAG-AAAAAAA
46892 ATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAA
321 ATAGTTTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAA
*
46957 AAATGAAAAAAGAGAAAAGTTAATGCAAAAT-AAAAAAATTATGAGAATTTAAAAACAGAAATAA
386 AAATGAAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAATTTAAAAACAGAAATAA
*
47021 GAAATGAAAGGAAATTTGTGGG-AAAAAAAATAGAATAG-C-AA-GAAAAGACAAAAGCTTTGGA
451 GAAATGAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGACAAATGAAAAGACAAAAGATTTGGA
* *
47082 ATAAAAAACAGAAAAATAAAAAATTTTAAAAGAACGAAAAAATTAAAACAAGAAAAAATGAAAGT
516 ATAAAAAACAAAAAAAT-AAAAATTTTAAAACAACGAAAAAATTAAAACAAG-AAAAATGAAAGT
47147 AGATGAAAAAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAA
579 AGATG---AAAAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAA
* * *
47212 GTAG-AAAAAAATAAAAAAGATTCAAAAAATAAGAAAAAAAAATTGAACTTTATAAAACTTTTCT
641 GCAGAAAAAAAATAAAAAAGATGCAAAAAATAAGAAAAAAAAATTGAACTTTATAAAAATTTTCT
* * *
47276 AAAATATAAATAAAAAATAAATGGAAAAATAAATTAAGGGAAAAAAATT-AAAT-AA-AATACGA
706 AAAATAT-AA-AAAAAATAAATGAAAAAATAAATTAAGGG-AAAAAATTAAAATAAACAAAAAGA
* *
47338 AAAAAGGAA-AAAAT-AGAAAA-TT-AGCGAATCAAAAAAAT-ATA-AAAGGACAAAA
768 AAAAAGGAACAAAATAAGAAAATTTAAACGAA-CAAAAAAATGA-ACAAA--AAAAAA
* * *
47390 TGAAAGGACATAGAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTCAATGAAAAATTGTAAAAA
1 TGAAAGCACATA-AAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAA
* *
47455 TGCAATAGAAAATAACCAAGAATAATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
65 TGCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACT
* *
47520 TTATAAAAATTTAAAAACTAT-AA-AAAGAAAAGAAAAGAAAAAA
130 TTATAAAAATTTAGAAACTATAAACAAAG-AAAGAAAATAAAAAA
47563 TACAATAAAA
Statistics
Matches: 923, Mismatches: 48, Indels: 82
0.88 0.05 0.08
Matches are distributed among these distances:
813 4 0.00
814 25 0.03
815 15 0.02
816 173 0.19
817 33 0.04
818 22 0.02
819 4 0.00
820 78 0.08
821 64 0.07
822 32 0.03
823 8 0.01
829 1 0.00
831 16 0.02
832 93 0.10
833 130 0.14
843 13 0.01
844 1 0.00
851 3 0.00
852 33 0.04
855 6 0.01
857 6 0.01
858 2 0.00
860 11 0.01
861 150 0.16
ACGTcount: A:0.66, C:0.06, G:0.12, T:0.17
Consensus pattern (821 bp):
TGAAAGCACATAAAAAAAGAAGAAAAATTTGAAAGGAGAAAAAGTTAATGAAAAATTATAAAAAT
GCAATAGAAAATAACCGAGAATGATAAAAGAAAAAAAGATAGAAAAATAAAAAATTCCAAAACTT
TATAAAAATTTAGAAACTATAAACAAAGAAAGAAAATAAAAAAATAAAAAAGAAAAAAAACGAAA
GCAAACGAAAAAAGATAAATAAAGCACAAGAAAAAACAAAAATATATAAAAAGTAAGAAAAGAAA
AAAAGACAAAAATTGAATAAAAATTTCAAAAATGAAATGGAATGACAAAAGAGAAAAAAAATAGT
TTAAAAAATACAAAAAATTGAAAAACATATAAGACCTAACAATATAAAAAGTCAGACAAAAAATG
AAAAAAGAGAAAAGTTAATGCAAAATAAAAAAAAGTATGAGAATTTAAAAACAGAAATAAGAAAT
GAAAGGAAATTTGTGGGAAAAAAAAATAGAATAGACAAATGAAAAGACAAAAGATTTGGAATAAA
AAACAAAAAAATAAAAATTTTAAAACAACGAAAAAATTAAAACAAGAAAAATGAAAGTAGATGAA
AAAAAACAAGAAGAAGGAAAATTGTGAAGGGAAAAAGTTATTAAAAAATTACAAAGCAGAAAAAA
AATAAAAAAGATGCAAAAAATAAGAAAAAAAAATTGAACTTTATAAAAATTTTCTAAAATATAAA
AAAAATAAATGAAAAAATAAATTAAGGGAAAAAATTAAAATAAACAAAAAGAAAAAAGGAACAAA
ATAAGAAAATTTAAACGAACAAAAAAATGAACAAAAAAAAA
Found at i:47822 original size:24 final size:22
Alignment explanation
Indices: 47795--47838 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
47785 TGGGGGAAAA
47795 AAAAAAGAAAAGCAAGAAAAGAAT
1 AAAAAAGAAAAG-AA-AAAAGAAT
*
47819 AAAAATGAAAAGAAAAAAGA
1 AAAAAAGAAAAGAAAAAAGA
47839 TTTGGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 2 0.11
24 11 0.58
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAGAAAAGAAAAAAGAAT
Found at i:47983 original size:13 final size:13
Alignment explanation
Indices: 47967--47991 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47957 AGCAAGAAAA
47967 AAAATAAAAAATG
1 AAAATAAAAAATG
47980 AAAATAAAAAAT
1 AAAATAAAAAAT
47992 ACATAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATAAAAAATG
Done.