Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167968.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46841
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Found at i:347 original size:28 final size:27
Alignment explanation
Indices: 300--356 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
290 CTGATTCGAT
*
300 CTTACACTGGGAATGAACTCCGTATGC
1 CTTACACTGGAAATGAACTCCGTATGC
327 CTTACGACTGGAAATTG-ACTCCGTATGC
1 CTTAC-ACTGGAAA-TGAACTCCGTATGC
355 CT
1 CT
357 AAGTCAACCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 5 0.19
28 20 0.74
29 2 0.07
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (27 bp):
CTTACACTGGAAATGAACTCCGTATGC
Found at i:4357 original size:118 final size:119
Alignment explanation
Indices: 4183--4415 Score: 369
Period size: 118 Copynumber: 2.0 Consensus size: 119
4173 TTGGTACACA
*
4183 TGATCCTTGTGTTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
1 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
4248 TTTGTGACCATTTTAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATGCG
66 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATGCG
** * * *
4302 TGATCCTTGTATTTTTGTTGGTGTGC-ACAAAAAAATTCAGCTAAAATCTCGAAGTGTACAGGAT
1 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
4366 TTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTA
66 TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTA
4416 CTGGCAGCAA
Statistics
Matches: 104, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
118 81 0.78
119 23 0.22
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (119 bp):
TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATGCG
Found at i:14093 original size:26 final size:26
Alignment explanation
Indices: 14064--14116 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14054 CTGGTCCGAT
14064 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
14090 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14116 C
1 C
14117 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16389 original size:897 final size:895
Alignment explanation
Indices: 14295--17312 Score: 3972
Period size: 897 Copynumber: 3.4 Consensus size: 895
14285 GACGAAACGA
* * * * *
14295 GCCCAGGGTAAAAAAAAATGCGGCACCAGCTCATGCATGAGCCCAGCATGTGCACCTGCAACCCT
1 GCCCCGGGTAAAAAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAACCCT
* * * *
14360 TGGTCTAGTCTGATCTTACATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTAT
66 CGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
14425 GCCTAAGTCAAGCCAC-AAAATGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGTAAGATGCGCAA
131 GCCTAAGTCAACCCACGAAAA-GAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA
* * * *
14489 G-CTGAGGATCGATTGGGTCCTCCCCTAT--GTGCTGTCGATCCTGCTACCACAACCCTCAATCT
195 GCCAGAGGATCGATCGGGTCC-CCCCT-TGCGTGCTG-CCATCCTGCTACCTCAACCCTCAATCT
* * *
14551 GGTAT-GAT-TATAGA-TCAGGAATGAACTCC-TATGCCTAAGCCAACCGACGAAACGAGCGGGC
257 GAT-TCAATCT-TAGACT-AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
** * * * * *
14612 GAACGGGCACTACGCCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCAATAAGGTGGTAGGTG
319 GGGCGGGCACTACGTCGGC-AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ** *
14677 GGTTTAGGCACATCTTCATATTTCTACTGTGCCAATGCCATTTTTATGGCTTGTAAGTTCATACA
383 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
14742 GTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATT
448 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
* * * * * *
14807 TTAGAAACTTTTTACAGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGTCCCCATAGT
513 TTTGAAACTTTTTACGGTTTAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* * * *
14872 CGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAGTG
578 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
14937 TAC-GAGATTTTGTGA-CATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATAGCTACTAGCA
643 TACAG-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * **
15000 GCAAACCTATAAAATCTCAAATGATCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
707 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATA
* *
15065 GTGGGCCAATATAAGGGCCAAATGCCAGCACCCATCACACATCATGTGCGCACA-ACCCCCGCCC
772 GGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCACACATCATGT-C-CACACACCCCCGCCC
* * **
15129 CCTCAATCGCCGGAACCCCAATGCCGCCGGA-CAGGTTCTCCGACGATGCTCCGATGATGGT
835 CCCCAATCGCCGGAACCCCAATGCCGTC-GATCAGGTTCTCCGACGATGCTCCGGCGATGGT
* ** * *
15190 GCCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCTT
1 GCCCCGGGTAAAAAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAACCCT
** * * * *
15255 CAATCTAGTCTAATCTTACAGTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTAT
66 CGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * *
15320 GCCTAAGTCAACCCACGAAACGAGCGTGCAGACACTCAGCCCGGCCAGAGGGGTA-GATGAC-CA
131 GCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAG-CCGGCCAGAGGGGCAGGATG-CGCA
* ** * ** * * *
15383 AGCCA-AGGATCAATCGGGTCCCCCCTTATGTGCTGCCAATCTTGCT-GTTGCAAACCTCAGTCC
194 AGCCAGAGGATCGATCGGGTCCCCCCTTGCGTGCTGCC-ATCCTGCTACCT-CAACCCTCAATCT
* * * * *
15446 G-GTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGACGG
257 GATTC-AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGG
* * * *
15510 GTGGGCACTACGTCGGTCAGACAGGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
321 GCGGGCACTACGTCGG-CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
15575 TTTAAGTACATCTTCCTATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
385 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
15640 GGTCCCTTAAGCCGTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTCCATGATTTT
450 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
* * *
15705 TGAAA-TTTTTACGGTTTAGGATTTTTTTAGAATTTTTTCAGAAGGATTTTTGGCTCCAAACTTG
515 TGAAACTTTTTACGGTTTAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
* * *
15769 GTAGATGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGT
580 GTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
15834 ACAGGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
644 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
15899 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGG
709 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGG
* ** *
15964 GGGCCAATATAATGGCCAAGTGCCAGTGCCCATCACACATCATGTCCACACACCCTCCTTCCCCC
774 GGGCCAATATAAGGGCCAAGTGCCAGCACCCATCACACATCATGTCCACACACCC-CC-GCCCCC
* *
16029 CCAATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCC-AGTGATGCTCCGGCGATGGT
837 CCAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGA-CGATGCTCCGGCGATGGT
** * *
16088 GCCTTGGGTGAAAAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGTAACCCT
1 GCCCCGGGTAAAAAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAACCCT
* *
16153 CGGTCCGGT-TCGATCTTACACTGGGAATGAACTCCGTATGCTTGGACTGGGAATGAAC-CTCGT
66 CGGTCCAGTCT-GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC-CGT
* * *
16216 ATGCCTAAGTCAACCCATGAAAAGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
129 ATGCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
** * * * * * *
16281 AGCCAG-GGATCGGCCAGGT-CCCTCTTGCATGCTACCTATCCTACTACCTCAACCCTCAGTCTG
194 AGCCAGAGGATCGATCGGGTCCCCCCTTGCGTGCTGCC-ATCCTGCTACCTCAACCCTCAATCTG
** *
16344 ATTCAATCTTAGACTAGGAATGATGTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
258 ATTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGC
* * *
16409 GCGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGTT
323 GGGCACTACGTC-GGCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
16474 TAGGCACATCCTCATATTTCTGCCTTGCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
387 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
16539 TCCCTTAAGCCTTCATGTGAACTTTAATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTG
452 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
16604 AAACTTTTTA-GGTTCATGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGT
517 AAACTTTTTACGGTTTAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
16668 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGGTGTACA
582 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
16733 GGATTTTGTGACCA-TTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAAA
647 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
16797 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATAAGGGATAGGGGG
712 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGG
* * *
16862 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACAGCGCCCCCCGCCCCCC
777 CCAATATAAGGGCCAAGTGCCAGCACCCATCACACATCA--TGTCCACA-C-ACCCCCGCCCCCC
* * * *
16927 CAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCCACGGT
838 CAATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGT
* * * * *
16985 GCCCCGAGT-GAAAAAAATGCAGCACTAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCTT
1 GCCCCGGGTAAAAAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAACCCT
* * * * *
17049 TGGTCCAGTATGATCTTACACTGGGAATGAAATCTGTATTG-TTAGATTGGGAATGAACTCCGTA
66 CGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTA-TGCTTAGACTGGGAATGAACTCCGTA
* *
17113 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA
130 TGCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA
* * * * *
17178 GCC-GAGGATCGGTCGAGTCCCCCCTTGCGTGCTGTCATCCTGCTGTCAT-AACCCTCAAT-TGA
195 GCCAGAGGATCGATCGGGTCCCCCCTTGCGTGCTGCCATCCTGCT-ACCTCAACCCTCAATCTGA
* ** *
17240 TTCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCA
259 TTCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
17305 GGCACTAC
324 GGCACTAC
17313 AATGGTCCCA
Statistics
Matches: 1854, Mismatches: 227, Indels: 84
0.86 0.10 0.04
Matches are distributed among these distances:
893 2 0.00
894 6 0.00
895 509 0.27
896 510 0.28
897 595 0.32
898 229 0.12
899 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCCCCGGGTAAAAAAAAATGCAGCACCAGCACATGCTTGAGCCCAGCATGTGCACCCGCAACCCT
CGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG
CCAGAGGATCGATCGGGTCCCCCCTTGCGTGCTGCCATCCTGCTACCTCAACCCTCAATCTGATT
CAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGG
CACTACGTCGGCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTTAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTGCCAGCACCCATCACACATCATGTCCACACACCCCCGCCCCCCCAATCGCC
GGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGGCGATGGT
Found at i:17743 original size:26 final size:26
Alignment explanation
Indices: 17714--17766 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
17704 CTGATCTGAT
*
17714 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
17740 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
17766 C
1 C
17767 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:18642 original size:26 final size:26
Alignment explanation
Indices: 18613--18665 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18603 CTGGTCCGAT
**
18613 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTCAGAATGAACTCCGTATG
*
18639 CTTAGACTCAGAATGAACTCCGTATG
1 CTTACACTCAGAATGAACTCCGTATG
18665 C
1 C
18666 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTCAGAATGAACTCCGTATG
Found at i:19547 original size:26 final size:26
Alignment explanation
Indices: 19511--19563 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19501 TCGATCAGAT
19511 CTTACATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
*
19537 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
19563 C
1 C
19564 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACATTGGGAATGAACTCCGTATG
Found at i:20445 original size:26 final size:26
Alignment explanation
Indices: 20406--20457 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20396 TCCAGTCCAA
*
20406 TCTTACACTAGGAATGAACTCTGTAT
1 TCTTACACTAGGAATGAACTCCGTAT
* *
20432 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTACACTAGGAATGAACTCCGTAT
20458 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
TCTTACACTAGGAATGAACTCCGTAT
Found at i:21321 original size:26 final size:26
Alignment explanation
Indices: 21285--21337 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21275 CCAGTCCAAT
21285 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
21311 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
21337 C
1 C
21338 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:22217 original size:26 final size:26
Alignment explanation
Indices: 22181--22233 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22171 CTGGTCAGAT
22181 CTTACATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
*
22207 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACATTGGGAATGAACTCCGTATG
22233 C
1 C
22234 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACATTGGGAATGAACTCCGTATG
Found at i:22615 original size:895 final size:894
Alignment explanation
Indices: 17658--23941 Score: 8243
Period size: 899 Copynumber: 7.0 Consensus size: 894
17648 ATAGGGGCCA
* * ** * * *
17658 CACCAGAACATGCCCGAGCCCAGTATGTGCACCTACAACCCTCAATCTGATCTGATCTTACACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAGTCTGGTCAGATCTTACACTG
* * *
17723 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGGAATGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
** * * *
17788 GCGTGCGGTTGCTCAGCCGACCAGAGGGGCAGGATGCCCAAGCCGAGGATC-GACCGGGTCCCCC
131 GCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGA-CGGGTCCCCC
** * * * *
17852 TCTGCATGCTACCGATCCTACTA-CAGTAACCCTCGATCCGATCTAATCTTAGACTGGGAATGAA
195 -CTGTGTGCTACCGATCCTACTACCA-CAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAA
** * *
17916 CTCCGTATGCCTAAGCCAACCGAAAAAATGAGCGGGCGGGCGGGCACTACTCCGGCCAGAGAGGC
258 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * *
17981 GGGATGCGCAATCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACC
323 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACC
18046 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
388 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * *
18111 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCTGAATTTT
453 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * * *
18176 TTTCAAATTTTTTCAGAAAGAGTTTTGGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTT
518 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * *
18241 GGCATGCATAAAAACATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTCGAAAAAA
583 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* * *
18306 GTGTCCCTAATTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
648 GTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* * *
18371 AAGAGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
713 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGC
**
18436 ACCCA-CTGCACATCATGTGCGCATAAACCCCCTGCC-CCCCCAA-CACCGAAACCCCTAATGCC
778 ACCCATC-GCACATCATGTGCGC---AACCCCC--CCGCCCCCAATCGTCGAAACCCC-AATGCC
* * * * *
18498 GCCGATCAGGTTCTCC-AGCGATGCTCCGATGATGGTGTCCCAGGC-AAAAACAAATACGG
836 GTCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGGGCGAAAAA-AAATACGG
*
18557 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTC-GATCTGGTCCGATCTTACACT
1 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAG-TCTGGTCAGATCTTACACT
**
18621 GGGAATGAACTCCGTATGCTTAGACTCAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
18686 AGTGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATTGGTCGGGT-CCCC
130 AGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACGGGTCCCCC
* *** * ** * * * *
18750 CTTTGCATGCTGTTGATCCTACTGCCACAACCCTGGATCTGGTCCGATCTTAGACTGTGAATGAG
195 CTGTG--TGCTACCGATCCTACTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAA
* * *
18815 CTCAGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGC
258 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * * *
18880 AGGATGCGTAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTCCATATTTCTACC
323 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACC
*
18945 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTAAAGTT
388 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* *
19010 TCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAA-TGTTTTACGGTTCGGGATTT
453 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT-TTTTACGGTTCGGGATTT
* ** *
19074 TTTTTAAATTTTTTCAGAAGGAGTTTTGGCCTTAAACTTGGTAGACGTGATCCATGTATTTTT-T
517 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
19138 CTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
582 -TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
* * * *
19203 AAGTGTCCCTATTTTAGACACTTTAATTGCTACCGGTAGCAAACCTATAAAATCTCAAATGCTCT
646 AAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCT
*
19268 TTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCA
711 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCA
* * *
19333 GCACCCATCGCACACCATGTGCGCACACCCCCACCGTCCCCAATCGTCGAAACGCCAATGCCGTC
776 GCACCCATCGCACATCATGTGCGCA-ACCCCC-CCGCCCCCAATCGTCGAAACCCCAATGCCGTC
* * * * *
19398 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGGGGTGAAAAAAAAAAATGA
839 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCG-AAAAAAAATACGG
* * * * * * *
19455 CAGCAGCACATGCCTGAGCCTAGCATGTCCACCCGTAACCCTCAGT-TCGATCAGATCTTACATT
1 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAGTCT-GGTCAGATCTTACACT
* * *
19519 GGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAATG
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * *
19584 AGCGTACGGGAGCTCAGCCGACCAGAGGGGCAGGATACGCAAGCCGGGGATCGGGCAGGTCCCCC
130 AGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACGGGTCCCCC
* * ** * * *
19649 CTGTGTGCTACCGAACCTGCTACCGTAACCCTCAATCCAGTCCGATCTTAGATTGGGAATGAACT
195 CTGTGTGCTACCGATCCTACTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACT
* * *
19714 CCGTATGCCTACGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAGAGGCGG
260 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * * * *
19779 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTTATATTTTTGCCAT
325 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCAT
*
19844 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTA
390 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* *
19909 ATGGCAAGACGACTCGTTTTCTCTTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT
455 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * *
19974 AAAAATTTTTTCAGAAGGAGTTTTGACCCCAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGG
520 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
20039 CATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
585 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* *
20104 GTCCCTATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTTTTTAA
650 GTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
*
20169 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGTCCAAGTACCAGCAC
715 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCAC
* * * *
20234 CCATCGCACACCATGTGCGCACACCCCCCAC-CGCCCCAATTGTCGGAACCCCAATGCCGCCGGT
780 CCATCGCACATCATGTGCGCA-ACCCCCC-CGC-CCCCAATCGTCGAAACCCCAATGCCGTCGGT
* ** * *
20298 CAGGTTCTCCAACGATGCTTTGGCGATGGTGCCCCGGGCGAAAAAAAATGCGG
842 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATACGG
* * * **
20351 CACCAACACATGCCCGAGCCAAGCATGTGCACCCGCAACCCTCGGTCCAGTCCA-ATCTTACACT
1 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAGTCTGGT-CAGATCTTACACT
* * * *
20415 AGGAATGAACTCTGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACA
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
20480 AGCATGCGGGCA-CTTAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATC-GACTGATCCCC
130 AGCGTGCGGG-AGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACGGGT-CCC
* * * ** * * * * * *
20543 CCCTGTGTGCCACCGATCTTGCTACTGCAACACTCAGTTCTGTCTGATCTTAGATTGGGAATGAT
193 CCCTGTGTGCTACCGATCCTACTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAA
* * * ** * *
20608 CTTCGTATGCCTAAGCCAATCGACGAAACGAGCGGG-TGGATGG-ACCACGCCGGCCAGTGAGGC
258 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGC
* * *
20671 GGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTATC
323 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACC
*
20736 ATGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
388 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * *
20801 TGATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTCTACGGTTCGAGATTTT
453 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
** ** * * *
20866 TTTAAAATTTTTT---TTGGAGTTTTCACCCCAAACTTGGTAGAAGTGATTCTTGTATTTATGTT
518 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
* * * * *
20928 GGCACGAACCAAAAAATTCAGCTAGAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
583 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* *
20993 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
648 GTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* *
21058 AAGGGGGTGTGAGTTATTGAGGTTTGATGAGGGATAAGGGG-CCAATATAAGGGCCAAGTACCAG
713 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGACCAATATAAGGGCCAAGTACCAG
* * * * *
21122 CACCCATCGCCCATCATGTGCAC-ACACCCCCCACCCCCAATCGTC-AGAAGCCCAATGTCGTCG
777 CACCCATCGCACATCATGTGCGCAAC-CCCCCCGCCCCCAATCGTCGA-AACCCCAATGCCGTCG
* *
21185 GTCAGG---T-------T-CTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGT
840 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATACGG
* * * **
21229 CACCAGCACATGCCCGAGCCTAGCATGTGCACCCGTAACCCT-TGATCCAGTCCA-ATCTTACAC
1 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAG-TCTGGT-CAGATCTTACAC
* *
21292 TGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
64 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
21357 GAGCGTGTGTGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGTCGGGGATC-GACTGGGTCCC
129 GAGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGAC-GGGTCCC
* ** * * * * *
21421 CCCTTGCGTGCCGCCGATCCTACTACCACAACCCTCAGTCTGGTTTGATCTTAGACTAGAAATGA
193 CCC-TGTGTGCTACCGATCCTACTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGA
* ** *
21486 ACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGATGGGCACTACGCTGGCCAGAGAGG
257 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
* * *
21551 CGGGATGCGGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCCAC
322 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * *
21616 CATGCCAAAGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCATGTGAAG-
387 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * * * *
21680 TTCATGGCAAGATGACTCATTTTTTATTTTTCATGATTTTTGAAACGTTTTATGGTTCGGGATTT
452 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTT
* * * * *
21745 TCTTAAAATTTTTTAAGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTTT
517 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
21810 TGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
582 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
* * *
21875 AGTGTCCCTATTTTAGACACTTTAATGGCTACCGGTAGCAAACCTATAAAATCTCAAATGCTCTT
647 AGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
21940 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAG
712 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAG
* * * *
22005 CACCCATCGCACACCATGTGCGCTAACCCCCACCGCCCCCAATTGCCGAAACGCCAATGCCGTCG
777 CACCCATCGCACATCATGTGCGC-AACCCCC-CCGCCCCCAATCGTCGAAACCCCAATGCCGTCG
* * ** *
22070 GTCAGGTACTCCGATGATGCTCCGACGATGGTGCCTGGGGCGAAAAAAAATACGA
840 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATACGG
* * * * *
22125 CAGCAGCACATGCCTC-AGCCCAGCATGTCCACCTGCAATCCTCAGTCTGGTCAGATCTTACATT
1 CACCAGCACATGCC-CGAGCCCAGCATGTGCACCCGCAACCCTCAGTCTGGTCAGATCTTACACT
* *
22189 GGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGTAACG
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * *
22254 AGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATACGTAAGCCGGGGATCGGGCAGGTCCCCC
130 AGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACGGGTCCCCC
* * * * * * * *
22319 CTGTGTTCTACTGAACCTGCTACCATAACCCTCAATCCGGTCCGATCTTAGATTGGTAATGAACT
195 CTGTGTGCTACCGATCCTACTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACT
* *
22384 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGG
260 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * * *
22449 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCATATCTTTATATTTCTGCCAT
325 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCAT
* *
22514 GCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG-TTA
390 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* *
22578 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTT
455 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* ** *
22643 AAAAAAATTTTCAGAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTGTTGG
520 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
22708 CATGCACAAAAAAATTCAGCTAAAAACTTGACA-TGTACAGGATTTTGTGACCATTTGAAAAAAG
585 CATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * *
22772 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACACACCTATAAAATCTCAAATGCTCTTTA
649 TGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
* *
22837 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
714 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCA
* * * * *
22902 CCCATCCCATATCATGTGCACACACCCCTCCTCGCCCCCTCAATTGTCGGAACCCCAATG-C-T-
779 CCCATCGCACATCATGTGCGCA-ACCCC-CC-CG-CCCC-CAATCGTCGAAACCCCAATGCCGTC
* * * * **
22964 -GCCA----AT-C-A-GGTTCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGTGG
839 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATACGG
* * * * * *
23012 CACCACCACATGCTCGAGCCCAACATGTGCACCCGCAACCCTCGGTCCGGTCGGATCTTACACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAGTCTGGTCAGATCTTACACTG
* * ** * * *
23077 GCAAATGAACTCCATATGCTTAGACTCAGAATAAACTCCGTATTCCTAAGTCAACCCACGAAACA
66 G-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
23142 AGCGTGTGGGTGCTCAACCGGCCAAAGGGGCAAGATGCACAAGCCGAGGAT-TGATCGGGTCCTC
130 AGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGA-CGGGTCC-C
* * * *** ** ** * * *
23206 GCC-GACGTGTTGTTGATCCTACTACTGCAACCCTCGGT-TGTTCTAATCTTAGACTGGGAATGA
193 CCCTG-TGTGCTACCGATCCTACTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGA
* * * *
23269 ACTTCGAATG-CTAAGCCAATCGACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGG
257 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGG
*
23333 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
322 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
23398 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
387 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* ** * * * *
23463 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAATTTTTATGGTTTGGGAATT
452 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTT
* * *
23528 TCTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTT
517 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
**
23593 TGGTGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA-GATTTTGTGACCATTTGAAAAA
582 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
* * * *
23657 AGCGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTCAAATGCTCTT
647 AGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
* * *
23722 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGTGG-CCATTATAA-GG-TAAGTACCA
712 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGACCAATATAAGGGCCAAGTACCA
* * *
23784 GCACCCATCGCACATCATGTGCGC-A-CCCCCCGCCCCCCAATCGTCGGAACCACAATGCCGCCG
776 GCACCCATCGCACATCATGTGCGCAACCCCCCCG-CCCCCAATCGTCGAAACCCCAATGCCGTCG
* * * * ***
23847 ATCAGGTTCTCCGGCGATGCTCCGACGATTGTG-CCCGGG-GTAAAAAAATGTAG
840 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATACGG
23900 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCT
1 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCT
23942 TGGTCCAATT
Statistics
Matches: 4730, Mismatches: 572, Indels: 177
0.86 0.10 0.03
Matches are distributed among these distances:
877 1 0.00
878 205 0.04
879 101 0.02
880 80 0.02
881 137 0.03
882 8 0.00
883 237 0.05
884 4 0.00
885 62 0.01
886 5 0.00
887 391 0.08
888 338 0.07
889 63 0.01
890 22 0.00
891 237 0.05
892 5 0.00
894 213 0.05
895 557 0.12
896 454 0.10
897 685 0.14
898 203 0.04
899 718 0.15
900 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCAGTCTGGTCAGATCTTACACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGACGGGTCCCCCC
TGTGTGCTACCGATCCTACTACCACAACCCTCAATCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATG
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
TCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCAACCCCCCCGCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAGG
TTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATACGG
Found at i:27021 original size:875 final size:867
Alignment explanation
Indices: 25109--27430 Score: 2879
Period size: 875 Copynumber: 2.7 Consensus size: 867
25099 GTCCAATTCA
* * * * *
25109 ATCTTAGACTGGGAATGAACTCCATACGCCTAAGCCAACCGGCAAAATGAGCGGGCGGGGGCACT
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGCGGGCACT
* ***
25174 ACGTCGGCCAGAGAGGCGGGACATGCAAGCCGTGGATGCGATAGGGGTGGTAGGTGGGTTTAGGC
66 ACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGAT-CGATA-GGGTGGTAGGTGGGTTTAGGC
25239 ACATCTTCATATTTCTGCCATGCCAATG-CATTTTTAT-GCTTGTAAATTCATACAATGGTCCCT
129 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
25302 TAAGCCTTAATGTGAAG-TTCATGGCAAGACGACTCGTTTTTTATTTTTCAAGGATTTCACAAAC
194 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-ACGATTTTAAAAAC
* * * *
25366 TTTTTACGGTTCGGGATTTTTTAAAAAATTTTTTC-GAAGGAGTTTTGGCCCTAAACTTGGTTGA
258 TTTTTACGGTTCGGGATTTTTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGA
* * * *
25430 CGTGATCCTTGTTTTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGA
323 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* **
25495 TTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACAGTTTAATGGCTACTGGCATAAAACCT
388 TTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * * *
25560 GTAAAATCTCAAATGCTCTTTGAGGTGGTGCGAGTTTTTGAGGTTTGAT-AAGGGATATGGGGCC
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAA--GATAGGGGGCC
* * *
25624 AATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGTGCACA-----CCCCCGCCCCCAA
516 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCCCCCCGCCCCCAA
25684 TCGCGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCTCGAGCAAAAAAAAATAC
581 TCGCGGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCTCGAGCAAAAAAAAATAC
* * * *
25749 GGTACCAACACATGCCCGAGCCTAGCTTCTGCACCCGCAACCCTCAGTCCGGTCCAATCTTACAC
646 GGCACCAACACATGCCCGAGCCTAGCCTATGCACCCACAACCCTCAGTCCGGTCCAATCTTACAC
* *
25814 TGTGAATGAACTCCGTATGCTTAGACTGGTAATTAGCTCTGTATGTCTAAGTCAATCGACGAAAC
711 TGGGAATGAACTCCATATGC----AC--GTAA-TAGC-C------TCTAAG-C-ATCGAC-AAAC
25879 AAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTAAGGTGCACAAGCCGGGGATCGGCTGGGCCCCC
759 AAGCGTGCGGGCGCTCAACCGGCCAGAGGGGTAAGGTGCACAAGCCGGGGATCGGCTGGGCCCCC
*** * *
25944 CTGTGTGCTACCGATCCAGCTGCCACAACCATCGATCCGGTCTG
824 CTACATGCTACCGATCCAGCTACCACAACCATCGATCCAGTCTG
* * * *
25988 ATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACAAGCGGGCGGCCGGGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGC-G-CGGGCA
* * *
26053 CTACGCCGACCAGAGAGGTGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGC
64 CTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
26118 ACATCTTTACATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
129 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * **
26183 TAAACCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-
194 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACT
* * *
26247 TTTTACGGTTCGAGATTTTTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTGGAT
259 TTTTACGGTTCGGGATTTTTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGAC
* *
26312 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAGCTCGAAGTGTACAGGAT
324 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * * *
26377 TTTGTGACCATTTGAAAAAAAGTGTCCCTATTTTAGACACTTCAATAGCTACTGGCAGCAAACCT
389 TTTGTGACCATTTG-AAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
26442 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATAGATAGGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-AGATAGGGGGCCA
* * * * *
26507 ATATAAGGTCCAAGTACCAGTACCGATCGCACATCAGGTGGGCACACCCCCCACCCCGCACCCTC
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCC-CCCCGC-CCC-C
* * * * *
26572 AATTCTC-GGAACCCCAGTGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGTCTCGG
579 AA-TCGCGGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CGA-----C---GATGGTGCCTCGA
* * * * ** * *
26636 GC-GAAAAAAATATGGCACCAGCACATGCCTGAGTCC-AGCCTATGCACTTACAACCTTCAGTCT
632 GCAAAAAAAAATACGGCACCAACACATGCCCGAG-CCTAGCCTATGCACCCACAACCCTCAGTCC
* * *
26699 GGTCCGATCTTACACTGGGCATGAACTCCATATGC-C-T-A-AG-C-C-AA-C-TCGTA-AAACG
696 GGTCCAATCTTACACTGGGAATGAACTCCATATGCACGTAATAGCCTCTAAGCATCG-ACAAACA
* * * * *
26754 AGCGTGCGGGTGCTCAGCTGGCCAGAGGGGT-AGGATGCACAAGCCGTGGATCGGTCAT-GTCCC
760 AGCGTGCGGGCGCTCAACCGGCCAGAGGGGTAAGG-TGCACAAGCCGGGGATCGG-C-TGGGCCC
*
26817 CCCTACATGCTACCGATCCTA-CTACCACAACCTTC-AGTCCAGTCTG
822 CCCTACATGCTACCGATCC-AGCTACCACAACCATCGA-TCCAGTCTG
* * *
26863 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGGGCAAGCGAGCA
1 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGC--GCGGGCA
* * * *
26928 CTACATCGGCCAAAGAGGTGAGATGCGCATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
64 CTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
26993 ACATCTTCATATTTCTGCCACT-CCAATGCCATTTTTGTGGCTTGTAAAATCATACAATGGTCGC
129 ACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
27057 TTAAGCCTCCATGTGAAGTTTCATGGCAACACAACT-GATTTTCTATTTTTCACGATTTTCAAAA
193 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTAAAAA
* * * *
27121 CTTTTTACGGTTCGGGAATTTTTT-AAAATTTTTTCAAAAGCAGTTTTGGCCTCAAACTTGGTAG
257 CTTTTTACGGTTCGGGATTTTTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAG
*
27185 ACGTGATCCTTGTATTTTTGTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
322 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* * * * *
27250 ATTTTCTAACCATTTGAGAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACC
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
27315 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGATAGGGGGCCA
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGATAGGGGGCCA
* *
27380 ATATAAGGGCCAAGTACTAGCACCCATCGCACATCAAGTGCGTACACCCCC
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCC
27431 TGCCCCCCAA
Statistics
Matches: 1262, Mismatches: 141, Indels: 86
0.85 0.09 0.06
Matches are distributed among these distances:
873 60 0.05
874 147 0.12
875 381 0.30
876 25 0.02
877 1 0.00
879 97 0.08
880 47 0.04
881 188 0.15
882 169 0.13
883 1 0.00
884 1 0.00
887 2 0.00
888 6 0.00
889 5 0.00
890 29 0.02
891 5 0.00
892 1 0.00
893 3 0.00
895 1 0.00
898 1 0.00
900 77 0.06
901 15 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (867 bp):
ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGCGGGCACT
ACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTT
TTACGGTTCGGGATTTTTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
TGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCCCCCCGCCCCCAATCGCG
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCTCGAGCAAAAAAAAATACGGCAC
CAACACATGCCCGAGCCTAGCCTATGCACCCACAACCCTCAGTCCGGTCCAATCTTACACTGGGA
ATGAACTCCATATGCACGTAATAGCCTCTAAGCATCGACAAACAAGCGTGCGGGCGCTCAACCGG
CCAGAGGGGTAAGGTGCACAAGCCGGGGATCGGCTGGGCCCCCCTACATGCTACCGATCCAGCTA
CCACAACCATCGATCCAGTCTG
Found at i:31120 original size:850 final size:866
Alignment explanation
Indices: 29776--32126 Score: 2974
Period size: 850 Copynumber: 2.7 Consensus size: 866
29766 GATTGGTCGA
** * * * * * *
29776 GTCCCCCTCTATGTGCTGCTGATCCTACTACCGCAACCCTTGGTCCTG-TTCAACCTTAGACTGG
1 GTCCCCCTCTACATGCTGCCGATCCTGCTACCACAACCCTCGGT-CTGATCCAATCTTAGACTGG
* * * * *
29840 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGAGTGGGCGGGCATTACACCGGCCA
65 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA-CGGGCGGGCACTACGCCGGCCA
* * * * *
29905 GAGAAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCATAGCTTCATAT
129 GAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
29970 TTCTGCCATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
194 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* *
30035 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCA
259 TGAAGTTTCATGGCAAGACGACTCG-----TA-TTTTC-------TT--AACTTTTTACGGTTCG
* * * * * **
30100 AGATTTTTTTAAAATTTTTTCAAAAGGATTTTTGTCCCTAAACTTGGTGGACAAGATCCTTGTAT
309 AGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
*
30165 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
374 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
30230 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAACTCTCAAAT
439 GAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
30295 GCTCTTTAAGGGGGTGTGAGTTGTCAAGGCTTGATAAGGGATAGGGGGCCAATATAAGGGCTAAG
504 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATAAGGGATAGGGGGCCAATATAAGGGC-AAG
* ** *
30360 TACCAGCACCCATTGCACATCATGTGCGCACACCCC-CTGCCCCTCAATCGTCGGAACCCCCAAT
568 TACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCACCCCCCAATCGTCGGAACCCCCAAT
** * *
30424 GCCGTCGGTCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCTGAGC-GAAAAAAAATACGGCA
633 GCCACCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGAGCAAAAAAAAAATACGGCA
* * *
30488 CCAGCACATCCCCGAGCCCAGCATGTGCACCCACAAGCCTCGGTCCGGTCC-A-A-TCT-T-A-C
698 CCAGCACATCCCCGAGCCCAGAATGTGCACCCACAACCCTCGGTCCGGTCCGATACACTGTGACC
* *
30547 -A-TT-G-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCC
763 AACTTAGCGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCC
* *
30608 AGCG-AGAGGGGTAGGATGCGCAAG-CTGGGGATCGCCCGG
828 -GCGCAGAGGGGCAGGATGCGCAAGTC-GGGGATCGACCGG
* * * * * * *
30647 GTCCCCCTCTGCATGCTGCCGATCTTGCTGCCACAACCCTCAGT-TCGGTCCGATCTTAGACTGA
1 GTCCCCCTCTACATGCTGCCGATCCTGCTACCACAACCCTCGGTCT-GATCCAATCTTAGACTGG
* * *
30711 GAATGGACTCCGTATGCCTCAGCCAACCGACGAAACGAGTCGACGGGCGGGCACTACGCCGGCTA
65 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGACGGGCGGGCACTACGCCGGCCA
*
30776 GAGAGGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-
129 GAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
30840 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCTTG
194 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * *
30905 TGAAGTTTGATGGCAAGATGACTCG-A-TTTC-T-A-TTTTTACGGTTCGAGATTTTTTAAAAAA
259 TGAAGTTTCATGGCAAGACGACTCGTATTTTCTTAACTTTTTACGGTTCGAGATTTTTT-TAAAA
*
30965 TTTTTT-AGATGGAGTTTTGGCCCCAAA-TTGGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
323 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
31028 CA-AAACAATATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTT
387 CACAAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTT
* * *
31092 CCCA-TTCTAGACGCTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAG
451 CCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * *
31156 GGGTGTGAGTTCTTGAGGCTTGATAAGGGATAGGGGGCCATTATAAAGGCCAACTACCAGCACCC
515 GGGTGTGAGTTCTCGAGGCTTGATAAGGGATAGGGGGCCAATAT-AAGGGCAAGTACCAGCACCC
31221 ATCGCACATCATGTGCGCACACCCCTCCACCCCCCAATCGTCGGAACCCCCAATGCCACCGGTCA
579 ATCGCACATCATGTGCGCACACCCCTCCACCCCCCAATCGTCGGAACCCCCAATGCCACCGGTCA
* * * ** *
31286 GGTTCTCCGGCGATGCTCGGGCGATGGTGCCCTGGGCAAAAAAAAAATGTGGCACCAGCACATGC
644 GGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGAGCAAAAAAAAAATACGGCACCAGCACATCC
* * *** *
31351 TCGAGCCCAGAATGTGCATCTGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGATCTCCA
709 CCGAGCCCAGAATGTGCACCCACAACCCTCGGTCCGGTCCGA---TACACT--G--TGA---CCA
*
31416 TATGCTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGTGCT
764 -A--CTTAG---CGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCT
* * * * **
31481 CGGTCGGGCAGAGGGGCAGGATGCGCAAGTCGGGGATTGATTGG
823 CAGCCGCGCAGAGGGGCAGGATGCGCAAGTCGGGGATCGACCGG
* ** **
31525 GTCTCCCTCTACATGCTGTTGATCCTGCTACTGCAACCCTCGGTCTGATCCAATCTTAGACTGGG
1 GTCCCCCTCTACATGCTGCCGATCCTGCTACCACAACCCTCGGTCTGATCCAATCTTAGACTGGG
* *
31590 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACAGGCGGGCACTACGTCGGCCAG
66 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GACGGGCGGGCACTACGCCGGCCAG
31655 AGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
130 AGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * *
31720 TCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCTTTCATGT
195 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* *
31785 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGG
260 GAAGTTTCATGGCAAGACGACTCG-----TA-TTTT--C-----TT--AACTTTTTACGGTTCGA
*
31850 GATTTTTTTAAAATTTTTTCAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
310 GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* *
31915 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAGGATTTTGTGACCATTTG
375 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
31980 AAAAAAGTG-TCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
440 AAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
32044 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCAAGTA
505 CTCTTTAAGGGGGTGTGAGTTCTCGAGGCTTGATAAGGGATAGGGGGCCAATATAAGGGCAAGTA
32109 CCAGCACCCATCGCACAT
570 CCAGCACCCATCGCACAT
32127 TGTCATAACG
Statistics
Matches: 1279, Mismatches: 136, Indels: 104
0.84 0.09 0.07
Matches are distributed among these distances:
849 8 0.01
850 254 0.20
851 83 0.06
852 55 0.04
853 1 0.00
854 1 0.00
857 1 0.00
858 2 0.00
862 4 0.00
863 1 0.00
864 2 0.00
868 1 0.00
869 1 0.00
870 87 0.07
871 157 0.12
872 3 0.00
873 2 0.00
874 1 0.00
877 3 0.00
878 251 0.20
879 85 0.07
885 1 0.00
887 3 0.00
889 1 0.00
895 1 0.00
897 27 0.02
898 108 0.08
899 130 0.10
900 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (866 bp):
GTCCCCCTCTACATGCTGCCGATCCTGCTACCACAACCCTCGGTCTGATCCAATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGACGGGCGGGCACTACGCCGGCCAGA
GAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
AAGTTTCATGGCAAGACGACTCGTATTTTCTTAACTTTTTACGGTTCGAGATTTTTTTAAAATTT
TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGCTTGATAAGGGATAGGGGGCCAATATAAGGGCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCTCCACCCCCCAATCGTCGGAACCCCCAATGCCACCGGTCAGGTTCTC
CGACGATGCTCCGGCGATGGTGCCCTGAGCAAAAAAAAAATACGGCACCAGCACATCCCCGAGCC
CAGAATGTGCACCCACAACCCTCGGTCCGGTCCGATACACTGTGACCAACTTAGCGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTCAGCCGCGCAGAGGGGCAGGATG
CGCAAGTCGGGGATCGACCGG
Found at i:31432 original size:26 final size:26
Alignment explanation
Indices: 31394--31446 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31384 CTGGTCCGAT
* *
31394 CTTACACTGGGAATGATCTCCATATG
1 CTTACACTCGGAATGAACTCCATATG
* *
31420 CTTAGACTCGGAATGAACTCCGTATG
1 CTTACACTCGGAATGAACTCCATATG
31446 C
1 C
31447 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTCGGAATGAACTCCATATG
Found at i:33111 original size:17 final size:16
Alignment explanation
Indices: 33091--33144 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
33081 TTTTTAGGAC
*
33091 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
33108 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
33125 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
33142 TTT
1 TTT
33145 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:35643 original size:26 final size:26
Alignment explanation
Indices: 35607--35659 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
35597 CCAATCTGAT
35607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
35659 C
1 C
35660 CTATGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36532 original size:27 final size:26
Alignment explanation
Indices: 36502--36558 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
36492 CCGGTCCAAT
36502 CTTACACTAGAAAATGAACTCCATATG
1 CTTACACT-GAAAATGAACTCCATATG
* ** *
36529 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGAAAATGAACTCCATATG
36555 CTTA
1 CTTA
36559 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (26 bp):
CTTACACTGAAAATGAACTCCATATG
Found at i:37429 original size:26 final size:26
Alignment explanation
Indices: 37400--37455 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
37390 CCGGTTTGAT
*
37400 CTTACA-CTAGGAATGAACTCCGTATG
1 CTTACATC-AGGAATAAACTCCGTATG
* *
37426 CTTAGATCGGGAATAAACTCCGTATG
1 CTTACATCAGGAATAAACTCCGTATG
37452 CTTA
1 CTTA
37456 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTACATCAGGAATAAACTCCGTATG
Found at i:37718 original size:897 final size:895
Alignment explanation
Indices: 34736--43881 Score: 11789
Period size: 898 Copynumber: 10.2 Consensus size: 895
34726 CCGGTCTGAT
* * * * * *
34736 CTTACACTGGGAATAAACTCCGTATGCCTAAGTCAAACCATGAAACAAGCGTACGGGCGAC-CAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-CTCAG
* * * * *
34800 CAGGCCAGAGGGGCAGGATGGACAAGTCGGGGATCGGTCGGGT--CCCCCTGCATGCTGT-CGAT
65 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCT-TCCGAT
* * * ** *
34862 CCTACTGTCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * * *
34927 AATCGACGAAACGAGCGAGCGGGCGGGCACTACATCAGCCAGAGAAGCGGGATGTGCAAGCCGTG
194 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
*
34992 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
259 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
*
35057 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTT
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* ** *
35122 GTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCTGGATTTTTTTTTAATTTTTTCAAA
389 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGA
* *
35187 AGGAGTTTTGGCCCCAAA-TCTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAAAA
453 AGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAA
* * * **
35251 ATTCAGCTAAAACCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTGG
516 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * *
35316 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATACTCTTTAAGGCGGTATGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *** *
35381 CTCAAGGTAAAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
35446 TGTGCGCATACCCCC-CGCCCCCCAATCATCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
711 TGTGCGCACACCCCCGC-CCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * * *
35510 ATGCTCCGACGACGGTGCCCCGGGCGAAAAAAAAAATACGGCACCAGCATATGCTCGAGCCCAGC
775 ATGCTCCGACGATGGTGCCCCGGGTG--AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* ** *
35575 ATGTGCACCCGTAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATG
838 ATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* *
35633 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
35698 CGGCCAGAGGGGCAAGATGCACAAGCCGGGCATCGGTCGGGT-CCCCCCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCTTCCGATCC
* * * * *
35762 TGCTTCCACAACCCTCAGTCCGGTCCGATCTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
35827 CCGACGAAATGAGCGGGCCGACAGGCACTAAGCCGGCCAGAGAAGCGGGATGCACAAGCCGTGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
35892 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* * * *
35957 GGCTTTTAAATTCGTACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
36022 TTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTAAAAATTTTTTCAAAAG
391 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGAAG
* * * *
36087 GAGTTTTTGCCCCAAACTTGGTAGACGTAATCCTTGTATTTCT-TTGGCATGCACAAAAACATTC
455 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
36151 AGCTAAAAACTCGAACTGTACAGGATTTTGTGACCATTTGAAAATAGTATCCCTATTTCAGACAC
520 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
36216 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCA
585 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
36281 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
650 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
36346 CGTACACCCCCCACCCCCCCAATCATCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATGC
715 CGCACA-CCCCCGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * * * * * * *
36411 TCCGACGATGGTGCCCCGAGTG-AAAAAACTGCAGTATCAGCAAATGCTCCGAGCCTAGTATGTG
779 TCCGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGCATGTG
** * * ** ** *
36475 CACTTGTAACCCTC-ATCCCGGTCCAATCTTACACTAGAAAATGAACTCCATATG
843 CACCCGCAACCCTCGGT-CCGGTCTGATCTTACACT-GGGAATGAACTCCGTATG
* * * *
36529 CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * ** *
36594 CGACCAGAAGGGTAGGATGCGA-AA-CCTGGGGATTGAT-TGGTCCCACCCTACGTGCAACTGAT
66 CGGCCAGAGGGGCAGGATGC-ACAAGCC-GGGGATCGGTCGGGTCCCCCCCTACGTGCTTCCGAT
* * * * ** *
36656 CCTGCAGCCGCAACCCTCGGTCTGATCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * * * * *
36721 AACTGATTAAAACGAGCAGGTGGGCAGGCACTACGCCGGTCAGAGAGGCGGGATGCGAAAGCCAT
194 AACCGA-CGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
* * * *
36786 GGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGTCAATGCCATTTT
258 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
* * *
36851 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTTTTGAAGTTTCATGGAAAGACGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* ** * *
36916 CGTTTTCTATTTTTCATGACTTTCAAAACTTTTTACGGTTCGGGTTTTTTGTAAAATTTTTTCAA
388 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGATTTTTT-TAAAATTTTTTCAG
* * *
36981 AAGGAGTTTTGGGCCCAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
37046 TTCACCTCAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAAA
517 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
37111 CATTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTC
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
37176 TCAAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
37241 GTGTGCACACCCCCTGGCCCCCCAATCGTCGGAACCCTAGTGCTGTCGGTCAGGTTCTTCGACGA
712 GTGCGCACACCCCC-GCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * *
37306 TGCTCC-AGCGATGGTGCCCCGGGTGAAAAAAAATGTGGCACCAGCACATGCCCGTGGCAAGCAT
776 TGCTCCGA-CGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
37370 GTGCTCCTGCAACCCTTGGTCCGGTTTGATCTTACACTAGGAATGAACTCCGTATG
840 GTGCACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* *
37426 CTTAGA-TCGGGAATAAACTCCGTATGCTTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
37490 CCGGCCACAGGGGCAGGATGCACAAGCCGAGGATCGGTCAGGTCCCCCCCTACGTGCTTCCGCTC
65 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCTTCCGATC
* * * * *
37555 TTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTACGCCCAAGCGA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
37620 ACCGACGAAACGAGCGGGCGGGCGGGTACAACGCCGGCCAGAGAGGCGGAATGCGCAAGTCGTGG
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
37685 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACAATTTTTA
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
* * * * *
37750 GGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTAATGTGAAGTTTCATGGTAAGATGACTC-
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* ** *
37814 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCAGAA
390 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG-TTCGGATTTTTTTAAAATTTTTTCAGAA
** * *
37879 GGTTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGA-AAAAACATT
454 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
37943 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTGCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
38008 TTTTAATGGCTACTGGCAGCAAACCTGTAAAATCCCACTCAAATACTCTTTAAGGGGGCGTAAGT
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAAT----CTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
38073 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
38138 ATGTGCGCACATCCCCCGCCCTCCCAATCACCGGAACCTCAATGCCGTTGGTCAGGTTCTCCGAC
710 ATGTGCGCACA-CCCCCGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* ** * * *
38203 GATGGTCCGACGATGGTGCCCCAAGTGAAAAAAAATACGGCACCAGCACATGCCCAAGCCTAGCA
774 GATGCTCCGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
38268 TGTGCACCCG-AATCCTTGGTCCGGTCCGACCTTACACTGGGAATGAACTCTGCATG
839 TGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
38324 CTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *** *
38389 CGGCCAGAGGGGTAGGATGCACAAGCCGGGGATCAACCGGGTCCCCACCGT--GTG-TTGCCGAT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCC-CCCTACGTGCTT-CCGAT
* * * *
38451 CCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
38516 AACCGACAAAACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTG
194 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
*
38581 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
259 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
*
38646 ATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * * *
38711 GTTTTTTATTTTTCACGATTTTTGAAACTTTTTACAGTTCATGATTTTTTAAAAATTCTTTCAGA
389 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGA
* * *
38776 AGGAGTTTTGGCCGCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAACAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
38841 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGAC
518 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
38906 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCGCTTTAAGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* ** * * *
38971 TGATTTTTTATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACACCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * * * **
39036 TGCGCACACCCCTGCCCCCCCAATTGTCGGAACCCCAATGCTGTCAGTCAGTTTCTCCGGTGATG
713 TGCGCACACCCCCGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
** * * ** * * *
39101 CTCCGGTGACGGTGCCCCGAGCAAAAAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCAAGTG
778 CTCCGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * ** **
39166 CAGCTGCAACCCTCGATCCGGTCTGATCTTACACTATGAATGAACTCTATATG
843 CACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
39219 CTTAGACTGGGAATGAACTCTGTATGCCTACGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * * *
39284 CAGCCAGAGGGGTGGGATGCACAAGTCGAGGATCAGTCGAGTCACCCCCTACGTGCTGCCGATCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCTTCCGATCC
* * * ** * * *
39349 TGCTGTCGTAACCCTCGGTTTGGTCTGATCTTAGACTTGGAATCAACTCCGTATGCCTAAGCTAA
131 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
39414 CCGACGAAATGAGCGGGCGAGCGGGCACTACACCGGCCAGAGAGGCAAGATGCGCAAGCCGTGAA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
39479 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTATGCCAATGCCATTTTTAT
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* * *
39544 GCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAAACGACTCAT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
** * * *
39609 TTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTCAGGATTTTTTTAAAATTTTTTTAGAAA
391 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGAAG
* * * *
39674 AATTTTTGGACCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTC
455 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
39738 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGAC
520 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
39803 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGCGAGTTCTTG
585 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
39868 AGGTTTGAT-AGGGGATAGGGGGCCAATATAAGGACCAGGTACCAGCACCCATCGCACATCATGT
650 AGGTTTGATGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
39932 GCGCACACCCCCTGCCCCCCCAATCATCGAAATCCGAATGCCGTCGATCAGGTTCTCCGATGATG
714 GCGCACACCCCC-GCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* ** * ** * * * **
39997 CTCTGGTGATGGTGCCTCGGGCAAAAAAAAATACAGCACCAGCATATGCTTGAGCCCAGCATGTG
778 CTCCGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
40062 CACCCGTAACCCTCAGTCTGGTCCT-ATCTTACATTGTGAATGAACTCCATATG
843 CACCCGCAACCCTCGGTCCGGT-CTGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
40115 CTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
40180 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTTGGGT-CCCCCCTACATGCTACCGATCT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCTTCCGATCC
* * * * *
40244 TACTGTCGCAACCCTCTA-TCCGGTCTGATCTTAGGCTTGGAAAGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * * *
40308 ACTGATGAAACGATCAGGCGAGCGGGCACTACGTCGGCCAGATAGACGGGATGTGCAA-CCTGTG
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC-GTG
* ** *
40372 GATCGATAGGGTGGTATGTTTGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
259 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
* * ** *
40437 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTTGTGAATTTTCATGGCAAGGTGACTT
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
** *
40502 GTTTTCTATTTTTCACAATTTTTGAAAGTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
389 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGA
*
40567 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
40632 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
40697 ACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
40762 CCAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
40827 TGCGCACAACCCCCGCCCCCCCAATCGTCGGAACCCTAATTCTGTCAGTCAGGTTCTCCGACGAT
713 TGCGCAC-ACCCCCGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* * ** * * * ** * *
40892 GGTTCGGTGTTGGTGCCCTGGG-AAAAAAAAATATGGCACCAACACATGCCCGTGCCCAGCATGT
777 GCTCCGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
*
40956 GCACCCACAA----C---CC--TC-GA---T-C-C-------G-A-T-CG-AT-
842 GCACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
40983 CTTACACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
41048 CGACCAGAGGGGCAAGATGTGCAAGCCAGGGATCGATCGGGT--CCCCC-AGCGTGCTGT-CGAT
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTA-CGTGCT-TCCGAT
** **
41109 CCTGCTGCCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
41174 AACCG-CTGAAACGAGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGTGGAATGCACAAGCCAT
194 AACCGAC-GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
*
41238 AGATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
258 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTT
* * ** *
41302 TATGGCTTATAAATTCTTACTGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACT
323 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
41367 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAG
388 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAG
* * * *
41432 AAGGATTTTTGGCCCCATACTTGGTAGACGTAATCCTTGTATTTTTGTTGGTATGCACAAAAAAA
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
41497 TTCAGCTAAAAACTCAAAGTGTATAGTATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCAGA
517 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
41562 CACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
582 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
41627 TTGAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
41692 ATGCGCACACCCCCCCCGGCCCCCAAATCATCGGAACCCCGATGCCGCCGGTCAGGTTCTCCGAC
712 GTGCGCACACCCCCGCC--CCCCC-AATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* ** * * ** *
41757 GATGGTCCGGTGATGGTGCCCCGGGTGAAAAAAAAAGTGGCACCAGCACATGCTTGAGCCCAACA
774 GATGCTCCGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * *
41822 TGTGCACTCACAACCCTCGGTCTGGTCTGATCTTAAACTGGGAATGAACTCCGCATG
839 TGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* * * * *
41879 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAACGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
41944 TAGCCAGAGGGGCAGGATGCACAAGCCGGGGATCAGCCAGGTCCCCCCCTGCATGCTAT-CGATC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCT-TCCGATC
* * * * * * ** * *
42008 CTCCTACCACAAACCTTATTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
42073 ACCGACGAAACAAGCGGGCGGGCGGGCACTACGTCGGCCAGAGATGCGGGATGCGCAAGCTGTGT
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
42138 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
* *
42203 TGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCATGTGAAGTTTCATGGCAAGACGACTTG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* *
42268 TTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCCGGATTTTTTTTAAATTTTTTCAGAA
390 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-CGGATTTTTTTAAAATTTTTTCAGAA
* * * *
42333 GGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAACATT
454 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
42398 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACA
519 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
42463 CTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
584 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
42528 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
649 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * ** * *
42593 GCG-ACACCCCCCACCCCCCCAATCGTCAAAACCCCAATGCCATCTGTCAGGTTCTCCGACGATG
714 GCGCACA-CCCCCGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
* * * * *
42657 CTCCGACGATGGTGCCCCGAGTGAAAAAAAAATGTGACACCAGCACATGCCTGAGCCCAGGATGT
778 CTCCGACGATGGTGCCCCGGGTG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* **
42722 GCACCCGCAACCCTCGGTCTGGTCCCATCTTACACTGGGAATGAACTCCGTATG
842 GCACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
* *
42776 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAAACGAGCGTGCGGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAG
** * * *
42841 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTGTGTGCTGCTGATA
65 CCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCTTCCGATC
* * * *
42906 TTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
42971 ATCGACAAAACGACCGGGCGGGCGGGCATTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCGTGA
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * * *
43036 ATCGATAGGTTGGTAGGTGGGTTTAGGCAAATCTTTATATTTCTGCCATGCCAATGCCATTTTTA
260 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
*
43101 TGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGACGACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
*
43166 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGCTCGAGATTTTTTTAAAATTTTTT-AGGA
390 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTTAAAATTTTTTCA-GA
* * *
43230 AGGAGTTTTGGTCCCAAACTTGGTAGATGTGAT-CTTCGTATTTTTGTTGGCATGCATAAAAAAA
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT-GTATTTTTGTTGGCATGCACAAAAAAA
* * * *** * *
43294 CTCAACTAAAAACTCGAAGTGGATC--GATGGGGTGACCATTTTAAAAAAGTGTCCCCATTTAAG
517 TTCAGCTAAAAACTCGAAGTGTA-CAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
43357 ACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
43422 CTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACCCATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
43487 TGTGCGCACACCTCCC-CCCCCCCAATTCGTCGGAACCCTAATGCC-ACTGGTCAGGTTCTCGGG
711 TGTGCGCACACC-CCCGCCCCCCCAA-TCATCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGA
* * *
43550 CGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATG-CTGAGCCCAG
773 CGATGCTCCGACGATGGTGCCCCGGGTG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
43614 CATGTGCACTCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATG
837 CATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
*
43673 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
43738 CGGCCAGAGGGGTAGGTTGCGCAAGTCAGGGATCGGCCGGGT-CCCCCCTACGTGCTGT-TGACC
66 CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCT-TCCGATC
* * * *
43801 CTGCTGTCACAACCCTC-GATCTGGT-TCGATCTTATACTGGGAATGAACTCCGTATGCCTAAGC
130 CTGCTGCCGCAACCCTCAG-TCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
43864 CAACCGACGAAACGAGCG
193 CAACCGACGAAACGAGCG
43882 ATCCGGTCCA
Statistics
Matches: 7209, Mismatches: 934, Indels: 214
0.86 0.11 0.03
Matches are distributed among these distances:
865 8 0.00
866 411 0.06
867 139 0.02
868 149 0.02
869 45 0.01
870 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
876 1 0.00
878 2 0.00
879 2 0.00
881 1 0.00
882 2 0.00
884 1 0.00
885 2 0.00
886 1 0.00
888 1 0.00
891 2 0.00
892 1 0.00
893 1 0.00
894 133 0.02
895 1036 0.14
896 1524 0.21
897 1369 0.19
898 1632 0.23
899 734 0.10
900 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCCTACGTGCTTCCGATCC
TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCGCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
CGACGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
CCGCAACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATG
Found at i:38337 original size:26 final size:26
Alignment explanation
Indices: 38298--38350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
38288 CCGGTCCGAC
*
38298 CTTACACTGGGAATGAACTCTGCATG
1 CTTACACTGAGAATGAACTCTGCATG
* *
38324 CTTAGACTGAGAATGAACTCTGTATG
1 CTTACACTGAGAATGAACTCTGCATG
38350 C
1 C
38351 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCTGCATG
Found at i:41889 original size:26 final size:26
Alignment explanation
Indices: 41853--41905 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
41843 CTGGTCTGAT
41853 CTTAAACTGGGAATGAACTCCGCATG
1 CTTAAACTGGGAATGAACTCCGCATG
* *
41879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGCATG
41905 C
1 C
41906 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGCATG
Found at i:42786 original size:26 final size:26
Alignment explanation
Indices: 42750--42802 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
42740 CTGGTCCCAT
42750 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
42776 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
42802 C
1 C
42803 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:43683 original size:26 final size:26
Alignment explanation
Indices: 43647--43699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
43637 CTGGTCTGAT
43647 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
43673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
43699 C
1 C
43700 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:46460 original size:26 final size:26
Alignment explanation
Indices: 46421--46473 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
46411 CCAGTCTGAT
*
46421 CTTACACTGAGAATGTACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
* * *
46447 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
46473 C
1 C
46474 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Done.