Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167969.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46691
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.25
Warning! 1000 characters in sequence are not A, C, G, or T
Found at i:581 original size:25 final size:26
Alignment explanation
Indices: 546--597 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
536 GTTGACTTAG
**
546 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
572 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
597 G
1 G
598 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6231 original size:902 final size:900
Alignment explanation
Indices: 4393--8878 Score: 5900
Period size: 899 Copynumber: 5.0 Consensus size: 900
4383 TGAAATGGGG
* *
4393 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATATAAGGATCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* ** ** *
4458 AAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCTCAAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAA
* ** *
4523 AATCGTGAAAAATAGAAAACGAGTCAACTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCAT
131 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * ** * *
4588 TTTATGAATTTAGAAGCCACAAAAATGGCATCAGCATGCAGAAATATGAAGATGTGCCCAAACCC
196 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* *
4653 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCATAGT----GCCCG
261 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * *
4714 -T-A--CGCTCG-TTTCGTTGGTTGGCTTAGGCGTACGGAGTTCATT-CCAGTCTAAGATCAAAC
326 CTCACCCGCTCGTTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
4773 TGGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTT
391 TGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTT
* * * * * * * **
4838 GTGTATCCCTCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCATTTCCTGTGTTGACTTAGTAATA
456 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * * *
4903 TGGAGTTCATTCCCAGTCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGG
521 CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGG
* * * * * * **
4968 GTTGCAGTAGCACATTCTGGGCTCAGGCATGTGTTGGTGACGTATTTTTCTTCATCGGGGCACCA
586 GTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCA
* * * * *
5033 TCGCCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGGTGATCGGGGGGGCCGGG
651 TCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGG
* * * *
5098 GGGTGTGCGCACATGATGTGCAATGGGAT-TTGGTGCTTGGCCTTTATATTGGCCCCCTATCCCT
716 GGGTGTGCGCACATGATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
5162 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC-TTTCGAGATTTTACAGGTTTGCTGCCAG
780 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT-GAGATTTTACAGGTTTGCTGCCAG
* *
5226 TAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGT
844 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
5283 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATAAAAGGATCATGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* ** *
5347 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTAAAAAAATATCGAACCGCAAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAA
*
5412 AATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
131 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
5477 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
196 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* *
5542 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCACCCG
261 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * ** * *
5607 CTCACCCGCCTGCTTATTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAGGATCG
326 CTCACCCG-CT-CGT-TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
*** * * ** * *
5672 GACCAAACCGAGGGTTGTGGTAGTAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCTGG
388 GACTGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGG
* * * * * *
5737 CTTGCACATCCCGCCCATCTGGCCGACTGAGCGTCTGCACGCTCGTTTCATGTGTTGACTTAGGC
453 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * *
5802 ATACGAAGTTCATTCCCAGTCAAAGCATACGAAGTTCATTCCCAGTCTAAGATTGGAGTGGACCG
518 ATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
* * * *
5867 AGGATTGCAGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCACCGGGGCA
583 AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCA
* * * * *
5932 ACACCGTCGGAGCATTGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATC-GGGGAGTC
648 CCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC
* *
5996 GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTCGCCCTTATATTGGCCCCCTATC
713 G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * * *
6061 CCTCATCAAACCTCAAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACT
777 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
6126 AGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGT
842 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
6184 ACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGAATCATGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * **
6249 AAGTTTGGGGCCAAAAATTCTTCTGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAA
* * * * *
6314 AATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTATGGGACCAT
131 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
6379 TGTATGAATTTACCAGCCATAAAATTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC
196 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
6444 ACCTACCACCCTATGGATCCACGGCTTGCGCATCACGTCTCTCCGGCCGACGTAGTGCCTGCCCG
261 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * ** *
6509 CCCATCCGCCCGCCCGCCAGGTCGTTTCGTCGGTCGACTTATTCATATGGAGTTCATTCCCAATC
326 --C-T-CACCCG--C-TC--GT--TTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTC
* * * * * ** * *
6574 TAAGAT-TGCACTGGACTGAGTGTTGCGGCAGCAAGATTAGTAGCACGCAGTGGGGGACCCGGTC
380 TAAGATCAG-ACTGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTC
* * * * * * * *
6638 GATCCCCAGCTTGCGCATCCTGCCCCTCCGGTCGGCTGAGCACCCGCACACTTGTTTCGTGGGTT
444 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * *
6703 AACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTATGGAGTTCATTCCCAGTCTAAGATCGG
509 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
6768 ACCGTACCGAGGGTTGCTGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG-CTGCATTTTTCTT
574 ACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCTT
* * * * *
6832 CGCCAGGGCACCATCGTCGGAGCATCGCCAAAGAACCTGACCGACGGCATTGGGGTTCCAGTGAT
638 CGCCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGAT
* * *
6897 CGGGGGAGCCGGGGGGTGTTCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
703 CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * * *
6962 CCCCCTATCCCACATCAAACCTTGAGAACCCACACCCCCTTAAAGAGCATGTGAGATTTTACAGG
768 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
7027 TTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTCTTTTCAAATGGTCACAAAATCT
833 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
7092 TGT
898 TGT
* * * *
7095 ACACTTTGAATTTTTAGCTAAATTTTTTTGTACATGCCAAAAAAAATACAAGGATCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
** ** **
7160 AAGTTTGGGTTCAAAACCCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAA
66 AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAA
*
7225 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATC-TGAAGGATTAAGGGACCA
131 AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCA
* * * *
7289 TTGTATGAATTTACAAGTCATAAAAATGGCATTGGCAGGCAAAAATATGAAGATGTGCCTAAACA
195 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
7354 CACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGGCATAGTGGCCGCCC
260 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
7419 GCCCGCCCGCTCGTTTT-GTCGGTTGGCTTACGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
325 GCTCACCCGCTCGTTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
7483 CCGGACTGAGGGTTGCGGCAGTAGGATCGGTAGCACGTAGAAGGGGACCC-GACTGATCCCCGGC
390 CTGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTC-GATCCCCGGC
* * * *
7547 TTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCA
454 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
7612 TAC-AGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCGGACTAGACCG
519 TACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCG
** * * * *
7676 AGGGTTGTGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
583 AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCA
* *
7741 CCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCTGCATTGGGGTTCCGATGATCGGGGGGGCC
648 CCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCC
* * * * *
7806 GAGGGGTGTGCACTCATGATGTGTGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCC
713 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* *
7871 CACATCAATCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
778 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
7936 GTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGT
843 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
7994 ACACTTC-ACGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTAC
1 ACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * **
8058 CAAGATTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAA
65 CAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGA
* * * *
8123 AAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGATAAAGGGACCA
130 AAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * * * * *
8188 TTTTACGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAAAAATATGAATATGTGCCTCAACA
195 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
8253 CAACTAGCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGGCCGCCC
260 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* *
8318 G-TCCATCCGTTCGTTTT-GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG
325 GCT-CACCCGCTCGTTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAG
* * * * ** * *
8381 ACTGGACTAAGGGTTGTGACAGCAGGATCGGTAGCACGTAGAAGCAGACCCGGCCGATCCCCTGC
389 ACTGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGC
* * * *
8446 TTGCGCATCCGGCCCCTCTGGCTGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCA
454 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
*
8511 TAC-AGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACC
519 TACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACC
* * * **
8574 GAGGGTTAC-GACAGCACATGCTGGGCT-----A-GTGC------CGTATTTTTCTTTGCCAAGG
582 GAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGG
* * * * **
8626 CACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGCGACATTGGGGTTCTGACGATCGGGGGGG
646 CACCATCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGG
* * * * * * *
8691 TCGGGGGGTGTGCACACATGATGTGCGATGGGCGCTAGTACTTGGCCCTTATATTGGTCGCTTAT
711 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
8756 CCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
776 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
8821 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
841 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
8879 AAAAAATCCC
Statistics
Matches: 3171, Mismatches: 384, Indels: 85
0.87 0.11 0.02
Matches are distributed among these distances:
887 247 0.08
889 254 0.08
890 37 0.01
893 8 0.00
894 2 0.00
895 1 0.00
897 2 0.00
898 7 0.00
899 1033 0.33
900 7 0.00
901 108 0.03
902 680 0.21
903 3 0.00
904 2 0.00
905 2 0.00
906 5 0.00
907 9 0.00
909 4 0.00
910 435 0.14
911 325 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAA
AATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
CTCACCCGCTCGTTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
TGGACTGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTT
GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
CGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGG
GTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCA
TCGTCGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
Found at i:7645 original size:26 final size:26
Alignment explanation
Indices: 7609--7661 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
7599 GTTGACTTAG
7609 GCATACAGAGTTCATT-CCTAGTCTAA
1 GCATACAGAGTTCATTGCC-AGTCTAA
*
7635 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
7661 G
1 G
7662 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:8538 original size:26 final size:26
Alignment explanation
Indices: 8508--8560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8498 GTTGACTTAG
*
8508 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
8534 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
8560 G
1 G
8561 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:9335 original size:26 final size:26
Alignment explanation
Indices: 9293--9345 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
9283 GTTGACTTAG
*
9293 GCATACAGAGTTTATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
9319 GCATAC-GAGGTTCATTCCCAGTCTAA
1 GCATACAGA-GTTCATTCCCAATCTAA
9345 G
1 G
9346 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:10226 original size:26 final size:26
Alignment explanation
Indices: 10197--10249 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10187 GTTGACTTAG
* *
10197 GCATACGAAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10223 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
10249 G
1 G
10250 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:11718 original size:900 final size:899
Alignment explanation
Indices: 8871--22449 Score: 15824
Period size: 862 Copynumber: 15.3 Consensus size: 899
8861 AAATGGTCAC
* ** * * *
8871 AAAATCTTAAAAAATCCCGAACCACAAAAAGTTTCGAAGATCGTGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
8936 CTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
9001 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCAACGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
9066 GCACATCCCGTCTCTCTGGCCGGTGTAGTGCCGGCCCGCCCGCC-C-GCTCATTTCGTCGGTTGG
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGTTGG
* **
9129 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGAT
261 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGAT
* * * * * ** * * * *
9194 CGACAGCACGTAGAGGGTGACCTGGCTGATCCCCGATTTGTGCATCCCGCCCTTCTGGCTGGTTG
326 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
9259 AGTGCCCACATGCTCG-TTCTGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAATCTAAGCAT
391 AGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
9323 A-CGAGGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGTTGGGCTC
455 ATGGA-ATTCATTCCCAGTCTAAGATCGGACC-GA-CGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * ** * *
9387 GAGCATGTGCTGGTGCCGCATTATTCTTCTTCGAGGCACCATCATCGGAGCATCATCGAAGAACC
517 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * * *
9452 TGACC-AGCGCCATTGTGGTTCCGGCGATCGAGGGGGCCGGGGGG-GTTTGCGCACATGATGTGT
582 TGACCGA-CGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTG-TTGCGCACATGATGTGC
* * * *
9515 GATGGGTGCTGGTACTTGGCTCTTACATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACA
644 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
9580 CCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAACG
709 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
9645 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTT
774 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
9710 GCGTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCCAAAAATCTTTCCGAA
839 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
* * * ** *
9771 AAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATAAAAAAAAATAGAAAACGAGTAGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
9836 CTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
9901 GCATTGGCAAACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCTTATCGATCCATGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
9966 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCACCCGCCTGTTCGTTTCGTCTGTT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-TCCG-CTGCTCGTTTCGTCGGTT
* * * * * *
10031 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAAGGTTGTAGTAGCAAG
259 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGG
* * * * * *
10096 ATCGACAGCACGCAAAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGAC
324 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
10161 TGAGCACCCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCTAGTCTAAGCA
389 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
10226 TA-CGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTCCGGCAGCACATGCTGGGCT
454 TATGGAA-TTCATTCCCAGTCTAAGATCGGACC-GA-CGAGGGTTGCGGCAGCACATGCTGGGCT
* ** *
10290 CGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG---CA----C----CATCGTCGAAGAAC
516 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * * *
10344 CTGACCGGCGACATTAGGGTTCCGACGATCCGGGGTGGTCGGGGGGGTGTT-CGCACATGATGTG
581 CTGACCGACGGCATTGGGGTTCCGACGAT-CGGGG-GG-CCGGGGGGTGTTGCGCACATGATGTG
* *
10408 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCAC
643 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
10473 ACCCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAAC
708 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
10538 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTT
773 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *** * * *
10603 TGCATGCC-AAAATAATACAAGAATCATGTCTACCAAGGTTATAGCCAAAACTCCTTCTGAA
838 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
* * * *
10664 AAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* ** * *
10729 CTTGCCATGAAACTTCACGTGAAGGCTGAAGGGGTCATTGTATGAATTTTCAAGCCATAAAAATA
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
10794 GCATTGGCACACAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATCGATCCATGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
10859 GTGCATACCATCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCTCCTGTCTTCTCGTTTTGTCAGTT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCC-G-CTGCTCGTTTCGTCGGTT
** * * * *
10924 GGCTTTA-GCATATAGAGTTCATTCCCGGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGTAG
259 GGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
** * * *
10988 GAGT-GGCAGCACGCAGAGGGGGACTTGGTCGATCCGCGGCTCGCGCATCCCGCCCCTCTGGCCG
323 GA-TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
11052 GTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
387 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * **
11117 CTTATGGAATTCATTCCCAATCTAAGATCGGACCGGGCTGAGGGTTGCTGCAGCACATACTCAGC
452 CATATGGAATTCATTCCCAGTCTAAGATCGGACC-GAC-GAGGGTTGCGGCAGCACATGCTGGGC
* * * ** *
11182 TCGGGCATCTGCTGGTGCTGCATTTTTCTTCGCCAAGGCACCATCGCCGGAGCTTCGTCGGAGAA
515 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* *
11247 CCTAACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CGGGGGGTGTTG-GCACGTGATGTGCG
580 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTTGCGCACATGATGTGCG
*
11310 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCAC-C
645 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
11374 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGG
710 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
11439 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTG
775 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
11504 CGTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGTGCCAAAAATCTTTCCGAA
840 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
* * * ** *
11564 AAAATTTTAAAAAATCCCAAACCATAAAAAGTTTTGAAAATAAAAAAAAATAGAAAACGAGTAGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
11629 CTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
11694 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCGACCTACCACCCTATCGATCCACGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
11759 GCGCATCTCGTCTCTCTCGCCGGCGTAGTGCCCGCCCACCCACC-C-ACTCATTTCGTCTGTTGG
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGTTGG
* * * * **
11822 TTTAGGCATACGGAGTTCATTCCCATTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGAT
261 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGAT
* *
11887 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTATGGCCGGCTG
326 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * **
11952 AGCGCCTACATGCTCAATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----A-A
391 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
** **
12012 --G-A-TCA-T---A--C------CGGA-C--CGAGGGTTATGATAGCACATGCTGGGCTCGGGC
456 TGGAATTCATTCCCAGTCTAAGATCGGACCGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * *
12058 ATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCCT-GGAGAACCTGAC
521 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * *
12122 CGCCGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGAGGGTG-TGGGCACATGATGTGCGATGG
586 CGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGG-GGGTGTTGCGCACATGATGTGCGATGG
* * * * * * *
12186 GCGCTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTTATCAAACCTCAAGAAATAACACCCCC
649 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* **
12251 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGAAATTAAAGTGTCTGAAATGGGGAC
714 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * ** *
12316 ACTTTTTTGAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGAAGAATTTTTTTATGCATG
779 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * ** * * * *
12381 CCAACAAAAAT-CATGCATTACGTCTAATAAGTTTAGGCCCAAAAATCCTTCTGAA
844 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
* * * * *
12436 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
12501 CTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** *
12566 GCATTGGCACGCAGAAATATCCAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
12631 GAGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCTCGC-CCGCCAGGTCGTTTCGTCGGT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-C-CTCCG-CTGCTCGTTTCGTCGGT
* ** ** * * * ** *
12694 CGGCTTATTCATATAGAGTTCATTTCCAGTCTAAGATTAGACTGGACCGAGCATTGCGGCAGCAG
258 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * * * ** * *
12759 GATC-GTAGCACGTAGTGGGGGACCCGGTCGATCCTTGGCTCGTGCATCCCGCCCCTCTGGCCGG
323 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * ** * * * *
12823 ATAAGCGCCCGCGTGCTCATTTCATTGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAG-
388 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
12887 AT-CGG-----A----C---C----A---GA-C--CGAGGGTTGCTGCAGCACATGCTGGGCACG
453 ATATGGAATTCATTCCCAGTCTAAGATCGGACCGACGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * * *
12929 AGCATGTGCTGGTGCTGCATTTTTCTTCGCCAGGGCACCATCGTCGGAG-AAC--C-G-G-ACC-
518 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * ** *
12987 G---GA-GGCATTGGGGTTCC-AGTGATCGGGGGAGTCGGGGGGTGTT-CGCATGTGATGCGCGA
583 GACCGACGGCATTGGGGTTCCGA-CGATCGGGGG-GCCGGGGGGTGTTGCGCACATGATGTGCGA
* *
13046 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACA-C
646 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
13110 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
711 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
13175 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT-TAC
776 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
13239 GTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTT-CGAA
841 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCGAA
**
13298 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* *
13363 CTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
13428 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
13493 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCTGCCCGCCCACCCGCTCGTTTCGT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCT--CCG-----CTGCTCGTTTCGT
* * * *
13557 TGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACTGAGGGTTG-TGA
254 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCAG-
* * * * * ** *
13620 CAGCAAGATCGGTAGCACGTAGAAGGGGACCCGACCGATCCTTGGCTTGTGCATCCCG-CCCTCT
317 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
13684 GGCCGTCTGAGCGCCCGCAAGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
382 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
13749 CTAAGCATA-CGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGCTGCGGCAGCACATG
447 CTAAGCATATGGAA-TTCATTCCCAGTCTAAGATCGGACC-GA-CGAGGGTTGCGGCAGCACATG
* * * ** *
13813 CTAGCCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTC
509 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTC
** ** * *
13878 GGAGAACCTGACCGGTGGCATTGGGGTTCCGGTGATTGGGCGGGCCGAGGGGG-GTGTGCACACA
574 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCG-GGGGGTGT-TGCGCACA
13942 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
636 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
14007 AACTCACACTCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
701 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
14072 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGACT
766 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
14137 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACA-CCTT
831 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCTTT
**
14201 CAAAA
895 CCGAA
* *
14206 AAAATTTTAAAAAATCCCGAACCGTAAAAAATTTGGAAAATCATGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
14271 GTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
14336 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCCT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
14401 GCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCG---ACCGC--C-CG---C-TC--AT--
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGTTGG
* * * * * **
14452 -TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGAACAGAAGGTTGCAGCAATAGGAT
261 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGAT
* * ** *
14516 AGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTATGCATCCCGCCCCTCTGGCCGACTG
326 CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
14581 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAG-AT-
391 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * *
14644 CGG-----------A-TC--AGAT--------CGAGGGTTGCGGTAGCACATGTTGGGCTCGGGC
456 TGGAATTCATTCCCAGTCTAAGATCGGACCGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
14687 ATGTGCTGGTGCCGTATTTTTTTTCGTTGGGGCACCATCACTGGAGCATCGTCGGAGAACCTGAC
521 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * * *
14752 CGACGGCATTAGGGTACCGACGGTCAGAGGGGCTGGGAGGG-GTGTGTGCACATGATGTGCGATG
586 CGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG-GGGTGT-TGCGCACATGATGTGCGATG
*
14816 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCC
648 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
14881 CTTAAAGAGCATTTAAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
713 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
14946 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGACTTTTTTTGTGCAT
778 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
15011 GCCAACAAAAATACAAGGATCACGTCTACCCATGTTTGGGGCCAAACA-CCTT-CAAA
843 GCCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCCAAAAATCTTTCCGAA
* * *
15067 AAAATTTT-AAAAATCCCGAACTGTAAAAAATTTGGAAAATCATGAAAAATAGAAAAACGAGTCG
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAG-AAAACGAGTCG
*
15131 TGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAA
65 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAA
* * *
15196 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGC
129 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
15261 TTGCGGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCG---ACCGC--C-CG---C-TC--A
194 TTGC-GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGT
* * * * * **
15314 T---TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGAACAGAAGGTTGCAGCAATAG
258 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * ** *
15376 GATAGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTATGCATCCCGCCCCTCTGGCCGA
323 GATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
15441 CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAG-
388 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
15505 AT-CGG-----------A-TC--AGAT--------CGAGGGTTGCGGTAGCACATGTTGGGCTCG
453 ATATGGAATTCATTCCCAGTCTAAGATCGGACCGACGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * *
15547 GGCATGTGCTGGTGCCGTATTTTTTTTCGTTGGGGCACCATCGCTGGAGCATCGTCGGAGAACCT
518 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * *
15612 GACCGACGGCATTAGGGTTCCGACGGTCAGAGGGGCTGGGAGGG-GTGTGCGCACATGATGTGCG
583 GACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG-GGGTGT-TGCGCACATGATGTGCG
*
15676 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACAC
645 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15741 CCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAAATGG
710 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
15806 GGACACTTTTTTCAAACGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTG
775 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** * * * * ** * *
15871 CATGCTGAAAAAAATAAAAGTATCACATCTACCAAGTTTTGGGTGAAAAATCCTTCCAAA
840 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
* ** *
15931 AAAATTTTAAAAAATCTCGAAATGTAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
*
15996 CTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTG-ATGAATTTACAAGCCATAAAAAT
66 CTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
16060 GACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCATGGCT
130 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
16125 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATTCGCCCATCCGCCCACTTGCTCGTT
195 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC---CGCCC-TCCG----C-TGCTCGTT
* * * * * * *
16190 CCGTCGGTTGCCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGT
250 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * * * * *
16255 GGCAGCAGGATTGGTAGCA--CAGAGGTGGACCCGACCGATCCCTGGCTTCCGCATCCCACCCCT
315 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
16318 CT-GCCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
380 CTGGCC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * * *
16382 AGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGTCGAGGGTTGCTGCAGCACA
444 AGTCTAAGCATATGGAATTCATTCCCAGTCTAAGATCGGA-C-CGACGAGGGTTGCGGCAGCACA
* * * **
16447 TGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC-TCTGTCGAGGCCCCATCGTTGGAGCATC
507 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGCCGGAGCATC
** * * ** *
16511 ACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGGGTGTGCGC
571 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGT-TGCGC
* *
16576 ACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTC
633 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
16641 GCA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
698 G-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
16705 GTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
762 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * *
16770 GATTTTTTTTGTGCATGCCAAGAAAAAGACAAGGATCATGTCTACTAAGTTTGGGTCCAAAAATC
827 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-
16835 CTTT-CGAA
891 CTTTCCGAA
* ** * * * * *
16843 GAAATTTTAAAAAATCCCGAACCAAAAAAAATTTTAAAAATCTTGAAAAATAAAAAAACGAGTCT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAAT-AGAAAACGAGTCG
*
16908 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAAT
65 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * * *
16973 GTAATTGGAATGTAGAAATATGAAAATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCT
130 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
17038 TGCGCATCCCGTCTCTCTGGCCGGCCGTAAGTGCCCGCCTGTGCGTCCGCTCGCCCGTTTGTTCT
195 TGCGCATCCCGTCTCTCTGGCCGG-CGT-AGTGCCCGCCCG-CCCTCCGCT-GCTCG--T-TTC-
* * * * * *
17103 GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGA-CTAAGGTT-TA
252 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCA
* * * * ** * * * *
17165 TGATAGCAAGATCGACAGCATGCAGA--GGGACCCGGTAGATCCCTGTCTTGTGCAT-CCGGCCC
316 -G-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * **
17227 TCT-GCCAGCTGAACACCC-CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCAT
379 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * * *
17290 AGTCTAAGCATACGGAGTTTCATTCCCAGTCTATGATCGGACCGGAATGAAGGTTGCGGTAGCAC
444 AGTCTAAGCATATGGA-ATTCATTCCCAGTCTAAGATCGGACC-G-ACGAGGGTTGCGGCAGCAC
* * ** * * * *
17355 ATGCTCGACTCTAGCAGGTGCTGGTGCTGCATTTTTCTCCATCGGGGCACCATCGCCGGAGCATC
506 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC
* * ** * * * *
17420 GTCGGAGAACTTGATCGGTGGCATGGGGGTTCCGGCGATCGGGCGGGCCGGGGGG-GTGTGCTCG
571 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGT-TGCGCA
* *
17484 GATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATTCCCTCATCAAACCTC
634 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTC
* *
17548 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
698 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
17613 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
763 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * *
17678 AATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTT-GGACCAAAACTCT
828 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCT
*
17742 TT-TGAA
893 TTCCGAA
* *** ** * *
17748 AAAATTTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATTGA-GAAAAATAGAAAATGAGTCG
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA-TCATGAAAAATAGAAAACGAGTCG
* *
17812 TCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAT
65 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
17877 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
130 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
17942 TGCGCATCCCATCTCTCTGGCCGACGTAGTTCCCGCCTGCCCGCCCGCCCGCTCATTTCGTTGGT
195 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-TCCG-CTGCTCGTTTCGTCGGT
* * ** * ** * *
18007 TGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAAACCAAGGGTTGCAAAAGTAA
258 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAG
* * * * * * *
18072 GACCGGCAGCACACAGAGGGGGACCTGGGC-ATTCCCCGACTTGCGCATCCTGCCCCTCTAGCCG
323 GATCGGCAGCACGCAGAGGGGGACCCGGCCGA-TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
18136 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
387 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * ** *
18201 CATATTGAGTTCACTCCCAGTCTAAGATCAGACCAGACTGACAGTTGCGGTAGCACATGCTGGGC
452 CATATGGAATTCATTCCCAGTCTAAGATCGGACC-GAC-GAGGGTTGCGGCAGCACATGCTGGGC
** *
18266 TCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATC-CCGGAGTATCGTCGGAGAA
515 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* * *
18330 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GAGGGTGGTGCGCACATGATGTGCG
580 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTTGCGCACATGATGTGCG
*** *
18394 ATGGGTGCCAATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
645 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
18459 CCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT-AAGTGTCTGAAATGG
710 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
18523 GGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTTAGCTGAAATATTTTGT
775 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGT
* * * * *
18588 GCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAA
839 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
*
18649 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
18714 CTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
18778 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
18843 GCGCATCCCGTCTCTCTGGCCGGCATAGAGCTCGCCCTCCGC-CCGCCCGCTCGTTTCGTCGGTT
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-CTCCG-CTGCTCGTTTCGTCGGTT
* * *
18907 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCCGACCGAGGGTTGCGGCAGCAGG
259 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGG
* * * * *
18972 ATTGGCAGCACACAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCC-CCCTCTCTGGTCGG
324 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC-CTCTGGCCGG
* * *
19036 CTGAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
388 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
19101 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
453 ATATGGAATTCATTCCCAGTCTAAGATCGGAC-CGA-CGAGGGTTGCGGCAGCACATGCTGGGCT
19166 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CA-C--CGGAGAAC
516 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * ** * *
19220 CTGACCGGCGACATTGGGGTTATGACGATTGGGGGGGTCGGGGGGTG-TGCGCACATGATGTGCG
581 CTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTTGCGCACATGATGTGCG
* * * *
19284 ATGGGTGCTGGTACTTGGCCCTTATAATGACCCCCTATCCTTCATCAAACCTTGAGAACTCACAC
645 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
19349 CCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
710 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
19414 AGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
775 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
19479 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTGT-CGAG
840 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTT-TCCGAA
* * * * * * * *
19539 AAAATTTTAAAAAATCTCGAACAGCAAAACGTTTTCAAAATCGTGAGAAATAGAAAAACGAGTCC
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAG-AAAACGAGTCG
*
19604 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATTTATAAGCCAT-AAAA
65 TCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** * *
19668 TGGTATT-GCACATAGAAATATGAAGATGTACCTAAACCCA-CTACCACCCTATCGATCCACAGC
129 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
19731 TTGGGCATCCTGTCTCTCTGGTCGTCGTACTGCCCACCCG-CCTGCCCGTCTGCCCGTTTCGTCG
194 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCT--CCG-CTGCTCGTTTCGTCG
**
19795 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGC
256 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGC
* * * * * * *
19860 AGGATCGGCAGCACGCAGAGGGGCACTCGGCCAATCCCCGGCTTTCGTATCTCGCCCCTCTGGCT
321 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
19925 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG--T--
386 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
19986 G----T---A---A----GA-TC--AGACCGGA-C--CGAGGGTTGCGGCAGCACATGCTGGGCT
451 GCATATGGAATTCATTCCCAGTCTAAGATCGGACCGACGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * ** **** * *
20031 TGGGCATGTCCAGGTGCCACATTTTTCTTCACCGGGGCGTTGTCGTCGGAGCATCGTCCGAGAAC
516 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * * *
20096 TTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTG-TGCGCACATGATGTGCG
581 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTTGCGCACATGATGTGCG
* * * *
20160 ATGGGCGCTGGTACTTGGCCCTTATACTGGCCCCCTAACCCTTATCAAACCTCGAGAACTCACA-
645 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
20224 CCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGAAATGG
710 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
20288 GGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
775 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
20353 CATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCAAAAAATATTTCCGAA
840 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
* *
20413 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGTCAT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
20478 CCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATA
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** *
20543 GCATTGCCACATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCC-ATCGATCCACGGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
20607 GCGCATCCCG--TCTCT------C----TG---GCCCG----CC-C-GATCATTTCGCCGGTTGG
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGTTGG
** * * ** * * ** *
20651 CTTAGGCATACAAAGTTCATT-CCAGTCTAAAAT-GGACCACACTGAGGGTT-TATGGTTGGAGG
261 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA--GCAGCAGG
* * * * * * * * *
20713 AT-TGTAGGACGTAGAGGGTGACTC-GCCGATCCCTGGCTTGCGCATCCCGCCCGTCTGGCCGAC
324 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
20776 TGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCA
389 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
20840 TACGGAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCGGCAGCACATGCCGGGCTC
454 TATGGAATTCATTCCCAGTCTAAGATCGGAC-CGA-CGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
20905 GGTCATGTGCTGGTACCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
517 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* **
20970 TGACCG-C-GCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGT-ATGTACACATGATGTGCG
582 TGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTTGCGCACATGATGTGCG
* * *
21032 ATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATC-AACCTCGAGCACTCACTC
645 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
21096 CCCCTTAAAGAGC-TTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
710 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
21160 GGACACTTTTTTCAAATGGTCACAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
775 GGACACTTTTTTCAAATGGTCAC--AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * * * * *
21224 TGCATGCC-AAAAAAATAGAAGGATCACATCTAAAAATTTTGGGACCCACACTCCTTT-C-AA
838 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAT-CTTTCCGAA
* ** * *
21284 AAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTG-AAAATAGAAAATGAGTCGT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
21347 CTTTGCCATGAAACTTCATGTGAAGGCTTAATGGACCATTATATGAATTTACAAGCCATAAAAAT
66 C-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
21412 GGCATTGGCATGCAGAAATATGAAGATGTTCACTAAACCCACCTACCACCCTATCGATCCACGGC
130 GGCATTGGCACGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGC
*
21477 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCTAC-C-GCTCGTTTC-TCGGTT
194 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGTT
* * * * *
21535 GGCTTA-GCATATGGAGTTCATTCCCAGTCTAGGATCAGACCAGACTGAGGGTTGCAGCTGCAGG
259 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGG
* ** * * *
21599 ATCGACAATACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
324 ATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
21664 TGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
389 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
21729 TATGGAATTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTTACAGCAGTACATCCTGGGCT
454 TATGGAATTCATTCCCAGTCTAAGATC-GGA-CCGA-CGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
21794 CGGGCATGTGCTGGT-CCACATTTTTCTTCATCGGGG---CAT--------CTTCGTCGGAGATC
516 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* *
21847 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGCGTGTGTGCGCACATGATGTGT
581 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGT-TGCGCACATGATGTGC
* * * *
21912 AATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCA
644 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
21977 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
709 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
22042 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
774 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * * *
22107 GCAAGTCAACAAAAATGCAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAA
839 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
* * * * *
22168 AAAATTTTAAAAGATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT
1 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
22233 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
66 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
22298 GCATTGGCATGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTT
131 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
22363 GCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG--CT---C-GCTCGTTTCGTCGGTTGA
196 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGTTGG
22418 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
261 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
22450 CATATGGAGT
Statistics
Matches: 11043, Mismatches: 1302, Indels: 686
0.85 0.10 0.05
Matches are distributed among these distances:
847 14 0.00
848 71 0.01
849 31 0.00
850 18 0.00
851 34 0.00
852 1 0.00
854 2 0.00
859 4 0.00
860 44 0.00
861 99 0.01
862 833 0.08
863 800 0.07
864 71 0.01
865 134 0.01
866 7 0.00
867 137 0.01
868 52 0.00
869 56 0.01
870 190 0.02
871 125 0.01
872 522 0.05
873 292 0.03
874 437 0.04
875 128 0.01
876 119 0.01
877 3 0.00
878 22 0.00
879 14 0.00
880 33 0.00
881 103 0.01
882 72 0.01
883 112 0.01
884 87 0.01
885 228 0.02
886 53 0.00
887 200 0.02
888 150 0.01
889 98 0.01
890 339 0.03
891 316 0.03
892 18 0.00
893 639 0.06
894 221 0.02
895 13 0.00
896 180 0.02
897 4 0.00
898 121 0.01
899 572 0.05
900 753 0.07
901 151 0.01
902 116 0.01
903 67 0.01
904 481 0.04
905 59 0.01
906 117 0.01
907 329 0.03
908 333 0.03
909 136 0.01
910 24 0.00
911 194 0.02
912 321 0.03
913 130 0.01
914 5 0.00
915 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTCCGCTGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
TGGAATTCATTCCCAGTCTAAGATCGGACCGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTCCGAA
Found at i:13757 original size:26 final size:26
Alignment explanation
Indices: 13727--13779 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13717 GTTGACTTAG
*
13727 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13753 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
13779 G
1 G
13780 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:16399 original size:26 final size:26
Alignment explanation
Indices: 16363--16415 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
16353 GTTAACTTAG
16363 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
16389 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
16415 G
1 G
16416 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:17320 original size:27 final size:26
Alignment explanation
Indices: 17271--17322 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
17261 GTTGACTTAG
*
17271 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
17297 GCATACGGAGTTTCATTCCCAGTCTA
1 GCATACGGAG-TTCATTCACAGTCTA
17323 TGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:18887 original size:899 final size:902
Alignment explanation
Indices: 15478--22449 Score: 8513
Period size: 899 Copynumber: 7.8 Consensus size: 902
15468 GTTGACTTAG
* * * * *
15478 GCATACGGAGTTCATTCCCAGTATAAGATCGGATCAGATCGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAGGGTTGCGGCAGCACATGCTGGG
* * * *
15543 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGTTGGGGCACCATCGCTGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
15608 ACCTGACCGACGGCATTAGGGTTCCGACGGTCAGAGGGGCTGGGAGGGGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAG-GGGGTGTGCGCACATGATGT
*
15673 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15738 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15803 TGGGGACACTTTTTTCAAACGATCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * ** *
15868 GTGCATGCTGAA-AAAAATAAAAGTATCACATCTACCAAGTTTTGGGTGAAAAATCCTTCCAAAA
389 GTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
** * *
15932 AAATTTTAAAAAAT-CTCGAAATGTAAAAAGTTTTGAAAATCATGAAAATTAGAAAACGAGTCGT
453 AAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15996 CTTGCCATTAAAACTTCACGTGAAGGCTTAAGGGACCATTG-ATGAATTTACAAGCCATAAAAAT
517 CTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
16060 GACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCATGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
16125 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCATTCGCCCATCCGCCCACTTGCTCGTT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC--TC-CGC--CCG-CC-C--GCTCGTT
* * * * * * * *
16190 CCGTCGGTTGCCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGATCAAGGGTTGT
702 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * * * * * * * **
16255 GGCAGCAGGATTGGTAGCA--CAGAGGTGGACCCGACCGATCCCTGGCTTCCGCATCCCACCCCT
767 AGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCT
*
16318 CT-GCCTGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCC
832 CTGGCC-GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
*
16382 AGCCTAA
896 AGTCTAA
* * *
16389 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGGTCGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAGGGTTGCGGCAGCACATGCTGGG
* * * ** **
16454 CTCGGGCATGTGCTGGTGCTGCATTTTTC-TCTGTCGAGGCCCCATCGTTGGAGCATCACCGGAG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-GTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* ** *
16518 AACCTGACCGGCAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGGGTGTGCGCACATGAT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GAGGGGGTGTGCGCACATGAT
* *
16583 GTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGCA-AAC
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAAC
16647 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
16712 AAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
16777 TTTGTGCATGCCAAGAAAAAGACAAGGATCATGTCTACTAAGTTTGGGTCCAAAAATCCTTTCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * ** * * *
16842 AGAAATTTTAAAAAATCCCGAACCAAAAAAAATTTTAAAAATCTTGAAAAATAAAAAAACGAGTC
451 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAAT-AGAAAACGAGTC
* *
16907 TTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * *
16972 TGTAATTGGAATGTAGAAATATGAAAATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
17037 TTGCGCATCCCGTCTCTCTGGCCGGCCGTAAGTGCCCGCCTGTGCGTCCGCTCGCCCGTTTG-TT
645 TTGCGCATCCCGTCTCTCTGGCCGG-CGT-AGTGCCCGCC----C-TCCGCCCGCCCGCTCGTTT
* * ** * *
17101 CTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGAACTGGA-CTAAGGTT-
703 C-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTG
* * * * * * ** * * * *
17163 TATGATAGCAAGATCGACAGCATGCAGA--GGGACCCGGTAGATCCCTGTCTTGTGCATCC-GGC
766 CA-G-CAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCC
* * *
17225 CCTCT-GCCAGCTGAACACCC-CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
829 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
**
17288 ATAGTCTAA
894 CCAGTCTAA
* * * * * *
17297 GCATACGGAGTTTCATTCCCAGTCTATGATCGGACCGGAATGAAGGTTGCGGTAGCACATGCTCG
1 GCATACGGAG-TTCATTCCCAGTCTAAGATCAGACCAG-ATGAGGGTTGCGGCAGCACATGCTGG
* ** * * * *
17362 ACTCTAGCAGGTGCTGGTGCTGCATTTTTCTCCATCGGGGCACCATCGCCGGAGCATCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * * * * **
17427 AACTTGATCGGTGGCATGGGGGTTCCGGCGATCGGGCGGGCCGGGGGGGTGTGCTCGGATGATGT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
* *
17492 GCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATTCCCTCATCAAACCTCAAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAACTC
* *
17556 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
17621 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * **
17686 TATGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTT-GGACCAAAACT-CTTTTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
*** * * *
17749 AAATTTTAAAAAAT-CTCGAACTACAAAAAGTTTCAAAAATTGA-GAAAAATAGAAAATGAGTCG
453 AAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAA-TCATGAAAAATAGAAAACGAGTCG
* *
17812 TCTTGCCATGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
17877 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
17942 TGCGCATCCCATCTCTCTGGCCGACGTAGTTCCCG-CCTGCCCGCCCGCCCGCTCATTTCGTTGG
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCT--CCGCCCGCCCGCTCGTTTCGTCGG
* * * * ** *
18006 TTGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAAACCAAGGGTTGCAAAAGTA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * * * *
18071 AGACCGGCAGCACACAGAGGGGGACCTGGGC-ATTCCCCGACTTGCGCATCCTGCCCCTCTAGCC
774 GGATCGGCAGCACGCAGAGGGGGACCTGGCCGA-TCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
18135 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * ** *
18200 GCATATTGAGTTCACTCCCAGTCTAAGATCAGACCAGACTGACAGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCACATGCTGGG
** *
18265 CTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATC-CCGGAGTATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * *
18329 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGAGGGTG-GTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
*** *
18392 CGATGGGTGCCAATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
18457 ACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT-AAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
18521 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTTAGCTGAAATATTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTT
* * *
18586 GTGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
*
18651 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
18716 TGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
18780 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
18845 GCATCCCGTCTCTCTGGCCGGCATAGAGCTCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
18910 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCCGACCGAGGGTTGCGGCAGCAGGATT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATC
* * * *
18975 GGCAGCACACAGAGGGGGA-CTCGACCGATCCCCGGCTTGCGCATCC-CCCCTCTCTGGTCGGCT
779 GGCAGCACGCAGAGGGGGACCT-GGCCGATCCCCGGCTTGCGCATCCTGCCC-CTCTGGCCGGCT
** * *
19038 GAGTGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
19099 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TGAGGGTTGCGGCAGCACATGCTGGG
19164 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CA-C--CGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** * *
19218 ACCTGACCGGCGACATTGGGGTTATGACGATTGGGGGGGTCG-GGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* * * *
19282 CGATGGGTGCTGGTACTTGGCCCTTATAATGACCCCCTATCCTTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
19347 ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
19412 AGAGACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
19477 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAT-CTTGTCGAGAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-CCGAAAA
* * * * * * *
19541 AATTTTAAAAAAT-CTCGAACAGCAAAACGTTTTCAAAATCGTGAGAAATAGAAAAACGAGTCCT
454 AATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCATGAAAAATAG-AAAACGAGTCGT
*
19605 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATTTATAAGCCAT-AAAAT
517 CTTGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
19669 GGTATTGCACAT--AGAAATATGAAGATGTACCTAAACCCA-CTACCACCCTATCGATCCACAGC
581 GGCATTG-GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * * *
19731 TTGGGCATCCTGTCTCTCTGGTCGTCGTACTGCCCACCCGCCTGCCCGTCTGCCCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCC-GCCCGCCCGCTCGTTTCGTCGG
** *
19796 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCAGCAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCA
* * * *
19861 GGATCGGCAGCACGCAGAGGGGCA-CTCGGCCAATCCCCGGCTTTCGTAT-CTCGCCCCTCTGGC
774 GGATCGGCAGCACGCAGAGGGGGACCT-GGCCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGC
* * * * *
19924 TGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTGTA
837 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
19989 A
902 A
19990 G-AT-C--AG---A----C---C---G----GACC----GAGGGTTGCGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGAGGGTTGCGGCAGCACATGCTGGGC
* * * * ** **** * *
20030 TTGGGCATGTCCAGGTGCCACATTTTTCTTCACCGGGGCGTTGTCGTCGGAGCATCGTCCGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
* *
20095 CTTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGC
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
* * * *
20159 GATGGGCGCTGGTACTTGGCCCTTATACTGGCCCCCTAACCCTTATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
20224 -CCCCTTAAAGAGCATTTGAGATTCTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
20287 GGGACACTTTTTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * **
20352 GCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCAAAAAATATTTCCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
* * * * *
20417 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAGAGTCATCCTG
456 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
20482 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATAGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *** *
20547 TGCCACATAGAAATATGAAGATGTGCCTGAACCCACCTACCACCC-ATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
20611 ATCCCG--TCTCT------C----T----G------GCCCGCCCGATCATTTCGCCGGTTGGCTT
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * * * ** *
20654 AGGCATACAAAGTTCATT-CCAGTCTAAAAT-GGACCACACTGAGGGTT-TATGGTTGGAGGAT-
716 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCA--GCAGCAGGATC
* * * * * * * * * *
20715 TGTAGGACGTAGAGGGTGA-CTCGCCGATCCCTGGCTTGCGCATCCCGCCCGTCTGGCCGACTGA
779 GGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* *
20779 GCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
844 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
20837 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGATCGAGGGTTGCGGCAGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT-GAGGGTTGCGGCAGCACATGCTGGG
* * * * *
20902 CTCGGTCATGTGCTGGTACCGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* **
20967 ACCTGACC-GC-GCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGGTATGTACACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATGT
* *
21029 GCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATC-AACCTCGAGCACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
21093 CTCCCCCTTAAAGAGC-TTTCAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
21157 TGGGGACACTTTTTTCAAATGGTCACAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
324 TGGGGACACTTTTTTCAAATGGTCAC--AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** * * * * * *
21221 TTGTGCATGCCAA-AAAAATAGAAGGATCACATCTAAAAATTTTGGGACCCACACTCCTTTC-AA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * * *
21284 AAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTG-AAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
21347 CTTTGCCATGAAACTTCATGTGAAGGCTTAATGGACCATTATATGAATTTACAAGCCATAAAAAT
517 C-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
21412 GGCATTGGCATGCAGAAATATGAAGATGTTCACTAAACCCACCTACCACCCTATCGATCCACGGC
581 GGCATTGGCATGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGC
*
21477 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCT-------ACCGCTCGTTTC-TCGGT
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
21534 TGGCTTA-GCATATGGAGTTCATTCCCAGTCTAGGATCAGACCAGACTGAGGGTTGCAGCTGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAG
* ** * * *
21598 GATCGACAATACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
*
21663 CTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
21726 GCATATGGAATTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTTACAGCAGTACATCCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGA-TGAGGGTTGCGGCAGCACATGCTGG
* * *
21791 GCTCGGGCATGTGCTGGT-CCACATTTTTCTTCATCGGGG---CAT--------CTTCGTCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
21844 ATCCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCG-GGGCGTGTGTGCGCACATGAT
129 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGG-G-GTGTGCGCACATGAT
** * *
21908 GTGTAATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
21973 CGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
22038 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
22103 TTGTGCAAGTCAACAAAAATGCAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * *
22168 AAAATTTTAAAAGATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
22233 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
22298 GCATTGGCATGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
22363 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--CT---------CGCTCGTTTCGTCGGTTG
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTG
*
22417 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
22450 CATATGGAGT
Statistics
Matches: 5262, Mismatches: 640, Indels: 347
0.84 0.10 0.06
Matches are distributed among these distances:
847 19 0.00
848 71 0.01
849 31 0.01
850 18 0.00
851 41 0.01
854 1 0.00
861 1 0.00
862 1 0.00
864 1 0.00
865 60 0.01
866 1 0.00
868 3 0.00
869 18 0.00
870 109 0.02
871 113 0.02
872 209 0.04
873 151 0.03
874 253 0.05
875 59 0.01
876 120 0.02
877 1 0.00
878 18 0.00
879 4 0.00
880 41 0.01
881 102 0.02
882 69 0.01
883 108 0.02
884 86 0.02
885 127 0.02
886 50 0.01
887 39 0.01
888 76 0.01
889 107 0.02
890 340 0.06
891 309 0.06
892 15 0.00
893 29 0.01
896 1 0.00
897 1 0.00
898 132 0.03
899 439 0.08
900 204 0.04
901 143 0.03
902 107 0.02
903 60 0.01
904 154 0.03
905 46 0.01
906 43 0.01
907 207 0.04
908 57 0.01
909 140 0.03
910 23 0.00
911 229 0.04
912 321 0.06
913 132 0.03
914 5 0.00
915 12 0.00
917 2 0.00
918 2 0.00
919 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19109 original size:26 final size:26
Alignment explanation
Indices: 19073--19125 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
19063 GTTGACTTAG
19073 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19125 G
1 G
19126 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:20850 original size:26 final size:25
Alignment explanation
Indices: 20812--20863 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
20802 GTTGACTTAG
20812 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
*
20837 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
20863 G
1 G
20864 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:21739 original size:26 final size:26
Alignment explanation
Indices: 21700--21752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21690 GTTGACTTAG
*
21700 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
21726 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
21752 G
1 G
21753 ATCAGAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:22459 original size:26 final size:26
Alignment explanation
Indices: 22423--22475 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22413 GTTGACTTAG
22423 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
22449 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22475 G
1 G
22476 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23032 original size:733 final size:723
Alignment explanation
Indices: 21670--23130 Score: 2138
Period size: 733 Copynumber: 2.0 Consensus size: 723
21660 CGGCTGAGCA
* *
21670 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
* *
21735 ATTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTTACAGCAGTACATCCTGGGCTCGGGCA
66 ATTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTTACAGCAGCACATCCTGGGCTCGGCCA
* * * * * * *
21800 TGTGCTGGTCCACATTTTTCTTCATCGGGGCATCTTCGTCGGAGATCCTGACCGACGGCATTGGG
131 AGTGCTGGTCCACATTTTTCCTCACCGGGCCATCGTCGTCGGAGAACCTGACCGACGGCATTAGG
* * * *
21865 GTTCCGACGATCGGGGGGTCCGGGGCGTGTGTGCGCACATGATGTGTAATGGGTGCTGGAACTTG
196 GTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGATCTGCAATGGGTGCTGGAACTTG
* *
21930 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTT
261 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
21995 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
326 GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAT
* * * * * *
22060 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGTCAACAAAAATGC
391 GGCCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGTTTTATGCAAGCCAACAAAAATAC
* * * *
22125 AAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAGATCCTGAAC
456 AAGCATCACGTCTACCAAGTTTAGGGCCAAAACACATTCCGAAAAAATTTTAAAAAATCCCGAAC
* * * * *
22190 CGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
521 AGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
* *
22255 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
586 AGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
*
22320 ACATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTTGCGCATCCCGTCTCTCTGGCCG
651 ACATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTTGCGCATCCCATCTCTCTGGCCG
22385 ACGTAGTG
716 ACGTAGTG
*
22393 CCCGCTCGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
* * * * *
22458 GTTCATTCCCAGTCTAAGATC-GGATCAGACTGAGGGTTGC-GACAGCACATGCTGGGCTCGGCC
66 ATTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTTACAG-CAGCACATCCTGGGCTCGGCC
* * *
22521 AAGTGCTGGTGTCGCATTTTTCCTCGCCTGGGTACCATCGTCGGAGCATCACCGGAGAACCTGAC
130 AAGTGCTGGT-CCACATTTTTCCTCACC-GGG--CCATCGTC---G--T---CGGAGAACCTGAC
* * *
22586 CGACGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGGTCTGCGATGG
183 CGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGATCTGCAATGG
*
22650 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
248 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
22715 TTAAAGAGCATTTGAGATTTTGCAAGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATAGGGAC
313 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
* *
22780 ACTTTTTTCAAATGGCCACAAAATCTTGTACTCCTCGAGTTTTTAGCTGAATTGTTTTATGCATG
378 ACTTTTTTCAAATGGCCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGTTTTATGCAAG
* * ** * *
22845 CCAATAAAAATACAAGGATCACGTCTACCGGGTTTAGGGCCAAAACACCTTCTGAAAAAATTTTA
443 CCAACAAAAATACAAGCATCACGTCTACCAAGTTTAGGGCCAAAACACATTCCGAAAAAATTTTA
*
22910 AAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
508 AAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATG
*
22975 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCC-TCTAAAATGGCATTGGC
573 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCAT-AAAAATGGCATTGGC
* * * * * **
23039 ACGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGTGTCC
637 ACGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTTGCGCATCC
*
23104 CATCTCTTTGGCCGACGTAGTG
702 CATCTCTCTGGCCGACGTAGTG
23126 CCCGC
1 CCCGC
23131 CTGCCCGCCC
Statistics
Matches: 654, Mismatches: 70, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
721 1 0.00
722 43 0.07
723 94 0.14
724 3 0.00
726 6 0.01
729 1 0.00
731 1 0.00
732 1 0.00
733 457 0.70
734 47 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (723 bp):
CCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGA
ATTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTTACAGCAGCACATCCTGGGCTCGGCCA
AGTGCTGGTCCACATTTTTCCTCACCGGGCCATCGTCGTCGGAGAACCTGACCGACGGCATTAGG
GTTCCGACGATCGGGGGGGCCGGGGCGGGTGTGCGCACATGATCTGCAATGGGTGCTGGAACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAAT
GGCCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTGTTTTATGCAAGCCAACAAAAATAC
AAGCATCACGTCTACCAAGTTTAGGGCCAAAACACATTCCGAAAAAATTTTAAAAAATCCCGAAC
AGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA
ACATGTGCCTAAACCCACCTACCACCCTATCGAACCACAGCTTGCGCATCCCATCTCTCTGGCCG
ACGTAGTG
Found at i:23987 original size:604 final size:604
Alignment explanation
Indices: 22839--24018 Score: 2146
Period size: 604 Copynumber: 2.0 Consensus size: 604
22829 AATTGTTTTA
* ** *
22839 TGCATGCCAATAAAAATACAAGGATCACGTCTACCGGGTTTAGGGCCAAAACACCTTCTGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACACCTTCAGAAAAA
22904 ATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
66 ATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
*
22969 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCTCTAAAATGGCA
131 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAACTTACAAGCCTCTAAAATGGCA
23034 TTGGCACGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
196 TTGGCACGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
23099 TGTCCCATCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
261 TGTCCCATCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
*
23164 TTACGCATACGGAGTTCATTCCCAGACAAGATCGGACCGGACCGACGGTTGCAGCGGCAAATGCT
326 TTACGCATACAGAGTTCATTCCCAGACAAGATCGGACCGGACCGACGGTTGCAGCGGCAAATGCT
*
23229 GGGCTCGGGAATGTGCTGGTGTCGTATTTTTATTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
391 GGGCTCGGGAATGTGCTGGTGTCGCATTTTTATTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
*
23294 AGAACCTGACCGGTGCCATTGGGGTTCCGACGATCGGGGAGCTGGGGGGGTGTGGAAACATGATG
456 AGAACCTGACCGGTGCCATTGGGGTTCCGACGATCGGGGAGCCGGGGGGGTGTGGAAACATGATG
23359 TGTGATGGGTGCTGCTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTGAACCGCAA
521 TGTGATGGGTGCTGCTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTGAACCGCAA
23424 AAACTTCACGTCTACCATT
586 AAACTTCACGTCTACCATT
*
23443 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCAGAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACA-CCTTCAGAAAA
* * ** ** *
23507 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATTTTGAAAAATAGAAAACGAGTCGTCT
65 AATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
*
23572 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCTCTAAAATGGC
130 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAACTTACAAGCCTCTAAAATGGC
* *
23637 ATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGT
195 ATTGGCACGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
23702 GTGTCCCATCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
260 GTGTCCCATCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGG
*
23767 CTTACGCATACAGAGTTCATTCCCAGATAAGATCGGACCGGACCGACGGTTGCAGCGGCAAATGC
325 CTTACGCATACAGAGTTCATTCCCAGACAAGATCGGACCGGACCGACGGTTGCAGCGGCAAATGC
23832 TGGGCTCGGGAATGTGCTGGTGTCGCATTTTTATTCGTCGGGGCACCATCGCCGGAGCATCGTCG
390 TGGGCTCGGGAATGTGCTGGTGTCGCATTTTTATTCGTCGGGGCACCATCGCCGGAGCATCGTCG
* *
23897 GAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGGAAACATGAT
455 GAGAACCTGACCGGTGCCATTGGGGTTCCGACGATCGGGGAGCCGGGGGGGTGTGGAAACATGAT
23962 GTGTGATGGGTGCTGCTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCT
520 GTGTGATGGGTGCTGCTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCT
24019 CGAGAACTCA
Statistics
Matches: 553, Mismatches: 22, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
603 1 0.00
604 552 1.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (604 bp):
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACACCTTCAGAAAAA
ATTTTAAAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAACTTACAAGCCTCTAAAATGGCA
TTGGCACGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCG
TGTCCCATCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
TTACGCATACAGAGTTCATTCCCAGACAAGATCGGACCGGACCGACGGTTGCAGCGGCAAATGCT
GGGCTCGGGAATGTGCTGGTGTCGCATTTTTATTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
AGAACCTGACCGGTGCCATTGGGGTTCCGACGATCGGGGAGCCGGGGGGGTGTGGAAACATGATG
TGTGATGGGTGCTGCTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTGAACCGCAA
AAACTTCACGTCTACCATT
Found at i:26358 original size:604 final size:604
Alignment explanation
Indices: 25207--26386 Score: 2137
Period size: 604 Copynumber: 2.0 Consensus size: 604
25197 TGAGTTCTCG
25207 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCACACATCATGTT
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCACACATCATGTT
*
25272 TCCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATG
66 TCCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATG
*
25337 CTCCGGCGATGGTGCCCCGACGAATAAAAATGCGACACCAGCACATTCCCGAGCCCAGCATTTGC
131 CTCCGGCGATGGTGCCCCGACGAATAAAAATACGACACCAGCACATTCCCGAGCCCAGCATTTGC
*
25402 CGCTGCAACCGTCGGTCCGGTCCGATCTTATCTGGGAATGAACTCTGTATGCGTAAGCCAACCGA
196 CGCTGCAACCGTCGGTCCGGTCCGATCTTATCTGGGAATGAACTCCGTATGCGTAAGCCAACCGA
25467 CGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAAAGAGATGGGACACACAAGCCG
261 CGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAAAGAGATGGGACACACAAGCCG
25532 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTT
326 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTT
*
25597 AGAGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
391 AGAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
*
25662 CGTTTTCTATTTTTCAAAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCTGA
456 CGTTTTCTATTTTTCAAAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGA
** *
25727 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAATGGTAGA
521 AGGATTTTTGGCCCCAAACCCGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAATGGTAGA
25792 CGTGAAGTTTTTGCGGTTC
586 CGTGAAGTTTTTGCGGTTC
*
25811 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCATACATCATGTT
1 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCACACATCATGTT
* *
25876 TCCACACCCCCCCAGCTCCCCGATCGTCGGAACCCCAATGGCACCGGTCAGGTTCTCCGACGATG
66 TCCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATG
25941 CTCCGGCGATGGTGCCCCGACGAATAAAAATACGACACCAGCACATTCCCGAGCCCAGCATTTGC
131 CTCCGGCGATGGTGCCCCGACGAATAAAAATACGACACCAGCACATTCCCGAGCCCAGCATTTGC
*
26006 CGCTGCAACCGTCGGTCCGGTCCGATCTTGTCTGGGAATGAACTCCGTATGCGTAAGCCAACCGA
196 CGCTGCAACCGTCGGTCCGGTCCGATCTTATCTGGGAATGAACTCCGTATGCGTAAGCCAACCGA
*
26071 CGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAAAGAGATGGGACACGCAAGCCG
261 CGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAAAGAGATGGGACACACAAGCCG
*
26136 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCGTGCCAATGCCATTTT
326 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTT
*
26201 AGAGGCTTGTAAGTTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
391 AGAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** ** * *
26266 CGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCAGA
456 CGTTTTCTATTTTTCAAAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGA
*
26331 AGG-TGTTTTGGCCCTAAACCCGGTAGACGTGATCCTTGTATTTTTATTGGCATGCA
521 AGGAT-TTTTGGCCCCAAACCCGGTAGACGTGATCCTTGTATTTTTATTGGCATGCA
26387 TAAAACAATT
Statistics
Matches: 552, Mismatches: 23, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
603 1 0.00
604 551 1.00
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (604 bp):
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTAGCAGCACCCATCACACATCATGTT
TCCACACCCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATG
CTCCGGCGATGGTGCCCCGACGAATAAAAATACGACACCAGCACATTCCCGAGCCCAGCATTTGC
CGCTGCAACCGTCGGTCCGGTCCGATCTTATCTGGGAATGAACTCCGTATGCGTAAGCCAACCGA
CGAAACGAGTGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAAAGAGATGGGACACACAAGCCG
TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTT
AGAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCAAAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGA
AGGATTTTTGGCCCCAAACCCGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAAATGGTAGA
CGTGAAGTTTTTGCGGTTC
Found at i:26789 original size:26 final size:26
Alignment explanation
Indices: 26753--26831 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
26743 CCGATCCGAT
26753 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26779 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
26805 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
26831 C
1 C
26832 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:27547 original size:26 final size:26
Alignment explanation
Indices: 27509--27561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
27499 CTAGTCTGAT
27509 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
27535 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
27561 C
1 C
27562 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:28410 original size:26 final size:26
Alignment explanation
Indices: 28381--28433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28371 TGATTCTGAT
*
28381 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
28407 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
28433 C
1 C
28434 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:29312 original size:26 final size:26
Alignment explanation
Indices: 29274--29326 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29264 CTAGTCTGAT
29274 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
29300 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
29326 C
1 C
29327 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:31049 original size:26 final size:26
Alignment explanation
Indices: 31020--31072 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
31010 CCAGTCCGAT
31020 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
31072 C
1 C
31073 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31956 original size:26 final size:26
Alignment explanation
Indices: 31920--31972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31910 CTGGTCTGAT
*
31920 CTTAGACTGGGAGTGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
31946 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
31972 C
1 C
31973 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:32559 original size:901 final size:902
Alignment explanation
Indices: 26805--41265 Score: 17427
Period size: 893 Copynumber: 16.3 Consensus size: 902
26795 ACTCCATATG
*
26805 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGA--------GC--G-A-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
26858 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGTTCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
26923 TTAGGCACATGTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
26988 TCCATTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTT
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** * * * * **
27053 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-GAAAGGAGTGTGGGTCCCAAACTTTTTA
261 AAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
27117 GATGTGATCCTTCTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
27181 GATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
27246 CTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTGCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
27311 CAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCACATA-CCCCCTGGCCCCCCCG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCG
* * * ** * *
27375 ATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGGCA
585 ATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACG
* * * * * *
27440 AAGAAAAATGCGGTACCAGCACATGACCGAGCCCGGCATGTGCTACCGCAACCCTCGATCTAGTC
650 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
* *
27505 TGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
715 CGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
27570 ACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGACGGGCGGGATGCGCAAGCCAGGGATCG
779 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * * * ** * ** ** **
27635 GTCGAGTCACCCTCTACGTCCTACCAATCCTCCAACCATAACCCTCAGTGTGGTCCCAT
844 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* ** * * *
27694 TTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGGCG-AA--A-----------TG-A-T
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
*
27743 CGGG-----CG--GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** * *
27801 TCAGGCACATCTTCATATTTCTATGTGGCAATGCTATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
27866 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
27931 AAACTTTTTACGGTTC-AGGATCTTTTAAAATTTTTTCGGAATGAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTTATGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
27995 AGACGTGATGCTTGCATTTTTGTTGACTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
28060 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
28125 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* ** *
28190 CCAATATAAGGGCCAAGTTCCAGCACCCATTACACATCATGTGCGCACACACGCCCCGGACCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGG--CCCC
* * *
28255 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGATCTCCGACGA----------A-GATGCCCCG
582 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * * * *
28309 ATGAAGAAAAATGTGG-ACCAGCACATGCCCGAGCCCAGGATGTACTGCTGTAACCCTCGGTCTG
647 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
28373 ATTCTGATCTTAGACTGGGAATGAATTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
712 -GTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
28438 GTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
775 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * ** *
28503 ATCGGTCGGGTCCCCCTCTACGAGTTGTCGATCCTGCAGCCGCAACCCTCAGTCTGGTCTGAT
840 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* * *
28566 CCTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA--------GCGGGTAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
*
28623 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCGAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
28688 TTAGTG-ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATG
131 TTAG-GCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
28752 GTCCATTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* ** * * * * * **
28817 TAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT-GAAAGGAGTGTGGGTCCCAAACTTTTT
260 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* *
28881 AGATGTGATCCTTCTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
28945 AGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTAGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
29010 CCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTGCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
29075 CCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCACATA-CCCCCTGGCCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
* * * * *
29139 GATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
584 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * * * *
29204 AAAGAAAAATGCGGTACCAGCACATGACCGAGCCCGGCATGTGCTGCCGCAACCCTCGATCTAGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
29269 CTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
714 CCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
29334 AACCCACGAAACAAGCGTGCGGGCGCTCAGTCGGCCAGACGGGCGGGATGCGCAAGCCAGGGATC
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * * ** * ** ** **
29399 GGTCGAGTCACCCTCTACGTCCTACCAATCCTCCAACCATAACCCTCAGTGTGGTCCCAT
843 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* ** * * *
29459 TTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGGCG-AA--A-----------TG-A-T
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
*
29508 CGGG-----CG--GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** * *
29566 TCAGGCACATCTTCATATTTCTATGTGGCAATGCTATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
29631 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGACTCTTTTTCTATTTTTCATGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
29696 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAA-TATTTTTTGCCCCAAACTTGTT
261 AAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGT
*
29760 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
29825 AGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
29890 CCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGTTAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
29955 CCAGTATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACA-CCCCCTGGCCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCC
** * * * * **** **
30019 GATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCGGACGATGCTCCGACGACAACGCCCCGGT
584 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * *
30084 GAAGAAAAATGTGGCACCTGGACATGCCCAAGCCCAGCATGTGCTGCCGCAA-CC-C--TC--G-
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
30142 --G-TC-----C--GG--T---CT-G-AT-CTTACACTGGGAATGAACTCCGTATGCTTAAGTCA
714 CCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
30189 ACCCACGAAACGAGCGTGCGGGCGCTCAACCAGCCAGAGGGGCGAGATACGAAAGCCGGGGATTG
779 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * **
30254 GCCGAGTGCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAAT
844 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* * * * *
30313 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCAGACGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * * * * * *
30378 TGGGCAGTACGACGACCAGAGAGACAGGATGCCCAAGCTGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** * * *
30443 TTAGGTACATCTTCATATTTCTATGTGCCAATACCATTTTTGTGGCTTATAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
30508 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTCTCACGA-TTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** * *
30572 AAAACGTTTTGCT-GTTCGAGATTTTTTAAAATTTTCTCGACAA-GATTTTTGGCCCCAAACTTG
261 -AAAC-TTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTG
* *
30635 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
323 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
30700 CTAGATTTTGTGACCATTTGAAAAAAGTGTCTCTATTTCAGACACTTTAATGGCTACTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
30765 AACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
30830 GGTCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCC
* * ** * *
30894 CCAATCGTCATAACCCCAATGTCGCCGGTCAGGTTCT-C--CG--G-T-----GATGGTGCCCCG
582 CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
**
30948 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCA
647 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
31013 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 GTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
31078 TCAACCCACGAAATGAGCGTGTGGGCACTCAGCCGACCAGAGAGGG-GGGATGCGCAAGCCGGGG
776 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGGGATGCGCAAGCCGGGG
* * * * * * * *
31142 ATCGGTCGAGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCGGGTATGAT
840 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
31205 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-AGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA-G
* * * *
31268 GCGAGCTCTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
31333 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
31398 GT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * *
31462 AAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
260 GAAACTTTTTATGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
* * * *
31526 CAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAATATTTCAGCTAAAAACTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
31591 AAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
31656 ACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
31721 GCCAATATAAGGGCCAAGTATCGGCACCCATCGCACATCATGTGCGCACA-CCCCTCGGCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* *
31785 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATACTCCGGTGATGGTGCCCCGAC
584 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
** * * *
31850 GAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCGTCAGTCTGGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* *
31915 CTGATCTTAGACTGGGAGTGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
714 CCGATCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
31980 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCTAGAGGGGCAGGATGCGCAAGTCGGGGAAT
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG-AT
* * * * * **** **
32045 -GCCCAGGTCCCCCTCTGTGTGCTGCCGATCTTACTTTTGCAACCCTTGGTTTGGTCTGAT
842 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* * * *
32105 CTTACACTGGGAATGAACTCCATATGCCTAAGCCAACCAACGAAATGAGCGGGCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* *
32170 CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
32235 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
32300 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC-TCAATTTTT
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-GATTTTT
* * * **
32364 GAAACTTTTTGTAGTTCGAGATTTTTTAAAATTTTTTC-AAAAGAGTTTTGGGTCCAAACTTGGT
260 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * *
32428 AAACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
32493 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
32558 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** *
32623 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCCGAGCACACCCCCCCGGCCCGCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCC
* ** * * *
32688 GATCGCCGGAACCCCCATGCCACCGATCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAT
584 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
* * * ** * * * * ** *
32753 GGAGAAAAATGCAGCACCAGCACCTGCTAGAGTCGAGCATGTGCTACCGCAACCTTCATTCCGGT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
* **
32818 CCGATCATAGACTGGGAATGAACTCCGTATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTC
714 CCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
32883 AACCCATGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGAGGGGCCGGATGCACAAGACAGGGATC
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
** * * * ** * * * * *
32948 TACCGGGTCCCCCTCTGCATGCTGTCGATCTTGCTATCATAAACCTTAGTCCAGT-TCAAT
843 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCT-GAT
* * * *
33008 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGAC-AGAACAAACGGGCGAGCGGACGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AACGAGCGGGCGGGCGG--G-
33072 ACAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
62 -CAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * ** *
33137 TAGGTTTAGGCACATTTTCATATTTCTACATGCCAATTACATTTTTATGGCTTGTAAATTGATAC
126 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
33202 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGTTTTTTTATTTTTCAAGA
191 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCATGA
* * * * * * *
33267 TTTTTAAAATTTTTTTTGGTTCGGGATTTTTTAAAATTTCTTCGAAAGGATTTTTGGGCCCAAAC
255 TTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* * * * *
33332 TTAGTAGACATGATCCTTGTCTTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGT
320 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
33397 GTACAAGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
385 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
33462 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TGCGAGGTTTGATAAGGGAT
450 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CGAGGTTTGATGAGGGAT
*
33526 AGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
514 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * ** ** *
33591 CCCCCGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCCAACGATGGGGCC
579 CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * *
33656 TCGAC-AGAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGA
644 CCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
33720 CCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCC
708 TCTGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
33785 TAAGTTAACCCACGAAACGAGCGTGCGGGTGCTCAGCCAGG-CAGAGGGGTGGGATGCGGAAGCC
772 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * *
33849 AGGGATCGGTCGGGTCCACCTCT--GTGCTACCAATCCTGCTGCCACAACCCTTGATCCGGTCTG
836 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTG
33912 AT
901 AT
* * * * **
33914 CTTAGACTAGGAATGAACTCTGTATGCCTAAGGCAACCGACGGAACGAGCAAGTGGGCGGATGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGG
* *
33979 CGAATGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTCGT
62 C--A--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
34044 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGTCATTTTTATGGCTTGTAAATTCA
123 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
34109 T-CAATGGTCCCTTAAGCCTTCACGTGAAGTTTTAATGGCAAGACGACTCGTTTTCTAATTTTCA
188 TACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** *** * * * ** *
34173 TGATTTTCAAAACTTTTTACATTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTCACCCAA
252 TGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * * * *
34238 AACTTGGTAGATGTGATACTTTTATTTTT-TTCAGCATGCACAAAAAAATTCAACTAAAAACTCG
317 AACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
34302 AAGTGTACAAGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACT
381 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
34367 GGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGG
446 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
34432 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCC
511 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CC
* * * * * *
34497 CAGCCCCTCTGACCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCAGCGATG
575 CGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
* * * * *
34562 GTGCCCCAACGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTACCGCAA--C
639 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
34625 -C---C---T-CGA---T---CT--G-AT---C-CG-AT-CTTATACTGGGAATGAACTCCGTAT
704 TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * **
34667 GCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCATAAG
769 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * ** ** * * *
34732 CCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCTATCCTATTGCTGCAA-CCTTCTGTTCAGT
834 CCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTT-GGTCCGGT
34796 CTGAT
898 CTGAT
* * *
34801 CTTAGACTAGGAATGAACT-CGTATGCCT----------A--AAATGA----GCGGGCGGTC-GG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* *
34848 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGTTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
34913 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
34978 TCCCTTAAGCCTTCACGTGAAGTTTCAATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTT
196 TCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
35042 CAAA-TTTTTA-CGTTCG-GATTTTTTAAAATTTTTTTG-AAGGATTTTTGGCCCCAAACATGGT
260 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
** *
35103 AGACGTGAT-CTT-TATTTTTGTCAGCATGCACAAAAAAA-TCAACTAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
35165 AGATTTTGTGA-CGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
35229 CCTGTAAAATCT-AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
35292 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCCAGCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCC
* * * * * * *
35357 TGACCGTCGGAACCCTAATGCCTTCGGTCAGGTTCTCCGACGATGCTCTGGAGATGGTGCCCCAA
584 -GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* * **
35422 CGAA-AAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTATCGCAA--C-C---C---
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
35477 T-CGA---T---CT--G-AT---C-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
713 TCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** *
35526 AACCCACGAAATGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCATAAGCCGAGGATC
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* ** ** * * *
35591 GGCCGGGT-CCCCTCTGCGTGCTGCCTATCCTATTGCTGCAA-CCTTCTGTTCAGTCTGAT
843 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTT-GGTCCGGTCTGAT
* * * * *
35650 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAATGAGCGGGCGGTC--G--GG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
35711 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGTTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
35776 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
35841 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTCC
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
35906 AAATTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTTG-AAGGTGTTTTGGCCCCAAACATGGT
261 AAACTTTTTATGGTTCGAGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* *
35970 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAGCTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
36035 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
36100 CCTGTAAAATCTTAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
36165 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCTCGGCCCGCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCC-CC
* *
36230 CAATCACC-GAACCCCAATGCAC--CGGTCAGGTTCTCCGACGA---T---GCGATGGTGCCCC-
583 CGATCGCCGGAACCCCAATGC-CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
*
36285 A-GAAGAAAAAT-CGGCA--AGCACCTGCCCGAG-CCAGCATGTGCTG-C-CAAGCCCTCGGTCT
647 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCCTCGGTCT
*
36343 GGGT-CGATCTTAGACTGGGAATGAACTCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
711 -GGTCCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * **
36407 GTCAACCCA-G-AATGAGC-TTCGGGC-CTCAGACGGCCAGAGGGG-TGGATGC-C-AG-CAAGG
775 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* *
36464 ATC-GTC-GGT-CCCCTCT-CGTGCTG-CGCAT--TGCT-CCACAACCC-TCGTCCGAGT-TCGA
840 ATCGGCCGGGTCCCCCTCTGCGTGCTGCCG-ATCCTGCTGCCACAACCCTTGGTCCG-GTCT-GA
36519 T
902 T
* * *
36520 CTTAGACTGGGAATGAACTCCTTATGCCT-AGCCAACCGACGAAACGAAG-GAGG-GGGC-AGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AGCG-GGCGGGCGGGCA
*
36581 GGCGGGCACTACGTCGGCCAGA-AGACGGGATGCGCAAGCC-TGG--CGATAGGGT-GTAGGTGG
64 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
36641 GTTTAGGCACATCTTCATATTT-TGCGTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
129 GTTTAGGCACATCTTCATATTTCTGCG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
36705 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
193 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* *
36770 TTGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCACCAAACTT
258 TTGAAACTTTTTATGGTTCGAGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* *
36835 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAATTTCAGCTAAAAACTCGAAGTGT
322 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
36899 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
387 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
36964 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGG
452 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
37028 GGGCCAATATTAAGGGCCAAGTACCAGCACCCATCGCGCATCACATGTGCGAACACCCCCCCGAC
517 GGGCCAATA-TAAGGGCCAAGTACCAGCACCCATCGCACAT--CATGTGCGCACACCCCCCCG--
* * * *
37093 TCCCCCCGATCGTCTGGAACCCCAATGCC-TC---C-GG-T-TCCG--G-TTCTCCGACGATGGT
577 GCCCCCCGATCG-CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGT
* * * * *
37148 GCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCAGCAACCCTC
641 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
37213 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTAAGCTTAGACTGGGAATGAACTCCGTATG
706 GGTCTGGTCCGATCTTAGACTGGGAATGAACTC-GTATGCTTAGACTGGGAATGAACTCCGTATG
* * * ** * * * *
37278 CCTAAGTCAACCAATGAAA-TAGCACGCGGGCGCTTATCCGACCAGAGGGGCGGGATGCGCGAGC
770 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * ** * *
37342 CGAGGATCGACCGGGTCCCCCACTACGTGCT-ACGATCCTGCTGCCGCAATGCTCGGTCCAGTCT
835 CGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCT
*
37406 AAT
900 GAT
* ** ** * * * * *
37409 CTTAGACTGGAAATGAACTCTATATGAATAAGCCGACCGACGAAACGACCTGGCGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* *
37474 C-GGCACTACGCCGGCCAGAGAGACGGGATGCTCAAGCCGTGGATCGACAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
**
37538 TTAGGCACATCTGGATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
37603 TCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
** * * * **
37668 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-AGAAGGATTTTTGGGCCTAAACTTATT
261 AAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGT
* * * * ** * *
37732 AGACGTAATGCATG-ATTTTTGTTGGCATGCATAAAAAAATTCTTCTAAAAACTCAAAGTGTATA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* ** *
37796 AGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATTTCTACTGGTAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
37861 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTATTTCTTGAGGTTTGATAAGGGAGAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
37926 CCAATATAAGGGCCAAGTACTAGCGCCCATCGCACATCATGTGCCCACACCCTCCCGGCCCCCTC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-C
* * * *
37991 GATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCC-AGGATGCTTCGACGATGGTGCCCCGAC
584 GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAC
** * **
38055 GAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCATAA-CC-C--TC--G-
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT
*
38113 --G-TC-----C--GG--T--A-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCG
714 CCGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** ** *
38160 ACCCACGAATTGAGCGTGTAGGCGCTCAGCCGGCCATAGGGGCGGGATGCGCAAGCCGGGGATCG
779 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
38225 GTCGGTTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
844 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* * * * * *
38284 CTTAGAATGGGAATGAACTCCGTATGCCTAAACCAACAGACGAAATGAGCAGGTGGGC--G--GG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * * *
38345 CGGGCACTACGCCGACGAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTCGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
38410 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * ** * *
38475 TCCCTTAATCCTTCACATGAAGTTTCATGGCAAGACTACTCGTTTTCTATTTTTTTTTTATTTTC
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCATGATTTTT
* * * * *
38540 AAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAA-GATTTTTGGCACCAAACTTGG
260 GAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGG
* * * *
38604 TAGACATGATCCTTGTATTTTTTTTGGCACGCA-AAAAAAATTTAGCTAAAAACTCGAAGTGTAC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
38668 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
38733 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GTGGGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
38797 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGC-CA-ACACCCCCCGG-CCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCC
* * * **
38859 CGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTTCTCCGACGAAGCTCCGGCGATGGTGCCTTG
583 CGATCGCCGGAACCCCAATGCCGTCGGTCAGG-TTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * ** * * * * *
38924 GCGAAGAAAAATGCAGCACCAGCAGATGCCCGAGCTGAGTATGTGCTGCAGCAACCCTCAGCCCG
647 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
* * * *
38989 GTCCGATCTTAGATTGGGAATGAATTCCATAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 GTCCGATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** *
39054 TCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGGGAGCCGCGGA
776 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
39119 TCGACCAGGTCCCCCTCTGCGTGCTGCCAATCCTACTGCTACAACCCTTGGTCTGGTCTGAT
841 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* ** * * ** * * * *
39181 CTTAGACCGGGAATGAACTCTATATG-CTAAAGCCAACTGACAAAACGAGAAGACAGGAGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
* * * * * *
39245 GCGAGCACTACGCCGGCCAGAGAGATGGTATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGT
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
39310 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCTATTTTTATGGCTTGAAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
** *
39375 ACCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *** *** *
39440 AAAACTTTTTGCAGTTC-AGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCTATAACCTTG
260 GAAACTTTTTATGGTTCGA-GATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTG
* * * * *
39503 GTAGACATGATTCTTGTATTTTT-TTGGCATGCAAAAAAAAATTCGGGTAAAAACTCGAAGTGTA
323 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
** * *
39567 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTGTTTAAGACACTTTAATAGCTACTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
39632 AACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
39697 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACAGCCCCCCGACCACC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC-CC
* * * *
39762 CCGGATCGTCGAAACCCCAATGTCG-CTGGTTAGGTTCT-C--CGA--------CGATGGTGCCC
582 CC-GATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
** * *
39815 CGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTC
645 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* *
39880 TGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTA
710 TGGTCCGATCTTAGACTGGGAATGAAC-TCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
39945 AGTCAACCCACGAAACGACCGTGCGGGTGCTTAGTCGGCCAGAGGGGTGGGATGCGCAAGCCAGG
774 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * * *
40010 GATCGGTCGGGTCCCCCTTTGCGTGCTGTCGATCTTGCTACTACAA-CCTTCAGTCTGATCTGAT
839 GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTT-GGTCCGGTCTGAT
* * * *
40074 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAACAGGCGGGTGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
*
40139 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
40204 TTAGGGACATCTTCATATTTCTGTTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
40269 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
40334 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAA-AAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGT
* *
40398 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCT-AAAACTCAAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
40462 AGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
40527 CCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
40592 CCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGCCCCCTC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-C
* * * * ** *
40657 GATCGCCGGAACCACAATGGCG-CTGGTCAGGTTCTTCGATGATGCTCCGATGATGGTGCCTCGA
584 GATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA
* * * * *
40721 CGAAGAATAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCACAACCCTCGGTCCGG
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGG
* * *
40786 TTCGATCTTAGACTGGGAATGAACCTCGTATGCTTAGATTGGGAATAAACTCCGTATGCCTAAGT
713 TCCGATCTTAGACTGGGAATGAA-CTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * ** *
40851 CAACCCAC-AGAACGAGCATGTGGGCACTCAGCCGGCCAGAAGGGTGGGATGCGTAAATCGAGGA
777 CAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * * *
40915 TCAGCCTGGTCACCCTCTACGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
841 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
* *
40977 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGA----GCGGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * *
41038 CCGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
41103 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
41168 TCCCTTAAGCCTTTA-GTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATCTTCG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
41232 AAACTTTTTGTGGTTCGGGATTTTTTAAGATTTT
261 AAACTTTTTATGGTTCGAGATTTTTTAAAATTTT
41266 GTGACCATTT
Statistics
Matches: 11876, Mismatches: 1328, Indels: 727
0.85 0.10 0.05
Matches are distributed among these distances:
849 70 0.01
850 180 0.02
851 165 0.01
852 13 0.00
853 64 0.01
854 203 0.02
855 27 0.00
856 5 0.00
857 29 0.00
858 25 0.00
859 5 0.00
860 18 0.00
861 142 0.01
862 99 0.01
863 175 0.01
864 13 0.00
865 24 0.00
866 126 0.01
867 358 0.03
868 82 0.01
869 101 0.01
870 112 0.01
871 234 0.02
872 504 0.04
873 354 0.03
874 114 0.01
875 119 0.01
876 62 0.01
877 486 0.04
878 411 0.03
879 116 0.01
880 546 0.05
881 10 0.00
882 64 0.01
883 64 0.01
884 44 0.00
885 313 0.03
886 71 0.01
887 254 0.02
888 11 0.00
889 119 0.01
890 400 0.03
891 154 0.01
892 254 0.02
893 960 0.08
894 253 0.02
895 205 0.02
896 8 0.00
897 188 0.02
898 81 0.01
899 227 0.02
900 482 0.04
901 621 0.05
902 114 0.01
903 594 0.05
904 14 0.00
905 29 0.00
906 70 0.01
907 166 0.01
908 287 0.02
909 587 0.05
910 151 0.01
911 98 0.01
912 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
AAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
GATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGC
CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAACCCTTGGTCCGGTCTGAT
Found at i:32854 original size:26 final size:26
Alignment explanation
Indices: 32825--32875 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
32815 GGTCCGATCA
*
32825 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
32851 TAGACTATGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
32876 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:33767 original size:26 final size:26
Alignment explanation
Indices: 33731--33783 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33721 CTGATCTGAT
33731 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
33757 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
33783 C
1 C
33784 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:36385 original size:25 final size:26
Alignment explanation
Indices: 36351--36402 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
36341 CTGGGTCGAT
36351 CTTAGACTGGGAATGAACTCC-TATG
1 CTTAGACTGGGAATGAACTCCGTATG
36376 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36402 C
1 C
36403 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:39925 original size:26 final size:26
Alignment explanation
Indices: 39889--39941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
39879 CTGGTCCAAT
* *
39889 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
39915 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
39941 C
1 C
39942 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:40828 original size:26 final size:26
Alignment explanation
Indices: 40792--40844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
40782 CCGGTTCGAT
*
40792 CTTAGACTGGGAATGAAC-CTCGTATG
1 CTTAGACTGGGAATAAACTC-CGTATG
*
40818 CTTAGATTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
40844 C
1 C
40845 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:41643 original size:26 final size:27
Alignment explanation
Indices: 41591--41644 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
41581 CCGGTCCGAT
*
41591 CTTAGACTGGGAATGAAACTCCGTATG
1 CTTAGACTAGGAATGAAACTCCGTATG
*
41618 CTTAGACTAGGAATG-AACTCTGTATG
1 CTTAGACTAGGAATGAAACTCCGTATG
41644 C
1 C
41645 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTAGACTAGGAATGAAACTCCGTATG
Found at i:42518 original size:26 final size:26
Alignment explanation
Indices: 42489--42541 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
42479 CTAGTCCGAT
42489 CTTAGACT-GGCAATGAACTCCGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
*
42515 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
42541 C
1 C
42542 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:43023 original size:898 final size:897
Alignment explanation
Indices: 41258--46691 Score: 6637
Period size: 898 Copynumber: 6.1 Consensus size: 897
41248 GGGATTTTTT
41258 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
41323 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGCG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
41388 ACCAGATATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
131 GCCA-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * * ** *
41453 CGATCGTCAGAACCCCAATGTCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGG
195 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
* * * *
41518 CGAAGAAAAATGCGACACTAGCACATGCTGGAGCCCAGCATGTGCTGTCGTAACCCCTCGGTCCC
260 CGAAGAAAAATGCGACACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAA-CCCTCGGT-CC
41583 GGTCCGATCTTAGACTGGGAATGAAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTA
322 GGTCCGATCTTAGACTGGGAATG-AACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTA
* *
41648 AGTCAACCCATGAAACGAGCGTGCGGGCGCTCA-CCGGCCAGAGGGGCGAGATGCGCAAGCC-GG
386 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * **
41711 GATCGGTCGGGTCCGCTTCTACGTGCTACCGATCCTGCTGTCGCAACCCTCAGTCCAATCCGATC
451 GATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* * **
41776 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAATCGACAAAACGAACGGATGGGCGGGCGGCC
516 TTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGG-C
* * * * *
41841 ACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGATGGATCGATAGGGTGCTAGTTGTGTTTAG
580 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
41906 GCACATCTTCATATTTTTTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCC
644 GCACATCTTCATA-TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * *
41971 CTTTATCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTCATGATTTTCGAAA
708 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * *
42035 CTTTTTGTGGATCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAATCTTGGTAGAC
773 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
42100 GTGATCCTTGTATTTTTGTTGGCATGC-CAAAAAAATTCAGCTAAAAACGT-GAAGTGTAC
838 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTAC
* * *
42159 AAGATTTTGTGACCAATTGAAAAAAGTGTCCACATTTCAGACACTTTAATGGCAACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
42224 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
42289 GCCAATATAAGGGCCAAGTACCACCACCCATCACACATCATGAGTGCACACCCCCCGGCCCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * *
42354 GATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGAC
196 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
* * * **
42419 GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCACAACCCTCGGTCTAGT
261 GAAGAAAAATGCGACACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
42484 CCGATCTTAGACTGGCAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTT
325 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTC
* * * *
42549 AACCCACGAAATGAGTGTGCGGGCGCTTAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
390 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
42614 GGTCAGGTCCCCTTCTGCGTGCTACCAATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAG
455 GGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
*
42679 ACTGGGAATGAACTCCATATGCGTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGCCACTA
520 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGG-CACTA
* *
42744 TGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACA
584 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
42809 TCTTCATATTTTTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAT
649 TCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* **
42874 CCTTCA-GATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
714 CCTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * **
42938 TGTGGTTCGAGATTTTTTAAAAATTTTTT-AGAAGGGGTTTTGAACCCAAACTTGGTAGACGTGA
778 TGCGGTTCGAGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
43002 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCAAAGTGTAC
842 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
43058 GAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAAACACTGTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
43123 ACCTGTAAAATCTCACATGCTCTTTAA-GGGGTGTGGGTTCTCAAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
43187 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGAACACCCCCCGGCTCCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * ** * *
43252 GATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTTTGGCGATGCTCCGACGATGGTGCCCTGGC
196 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
*
43317 GAAGAAAAATGC-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAGCAACCCTCGGTCCGG
261 GAAGAAAAATGCGA-CACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * * * *
43381 TCCGATCTTAGACTGGGAATGAACTCCATAAGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
324 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGT
* * * * * *
43446 TAACCCACGAAACAAGTGTGCGGGCGCTCAGCCGGCCGGAGGGGCGAGATGCGCAAGCTGGGGAT
389 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
** * ** * * *
43511 CGACCGGGTCCCCCACTGCGTGCTACTAATCCTGCTGCCGCAACACTCGGTCCAGTCCAATCTTA
454 CGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* ** * * *
43576 GATTGGGAATGAACTCCATATGAATAAGTCGACCGACGAAACGACCTGGCGGGCGGGCGGGCAGG
519 GACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGA----GCGGGCGGGCGGGC-GG
* *
43641 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCCATAGGGTGGTAGGTGGGTTTAG
579 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
43706 GCACATCTTCATATTTCTACGTGCCAATGCCAATTTTATGGCTGGTAAATTCATACAATGGTCCC
644 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * **
43771 ATAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCGTGATTTTCAAAAC
709 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * * * *
43836 TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGAATTTTTGGCCCCAAACTTGGTAGACA
774 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
43901 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
839 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
43960 AAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTAGTAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
44024 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTTGAGGTTTGATGAGGGATAGGGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*** * * *
44089 GCCAATATAAGGTTGAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGACCCCC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * * *
44154 CGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACAATGCTCCGACGGTGTTGCCCCGG
195 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
* * * * * * **
44219 TGAAGAAAAATGTGACACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAATCCTTGGTCCAC
260 CGAAGAAAAATGCGACACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
44284 TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTTGACTGGGAATGAACT-TCGTATGCCTAAG
324 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCT-GTATGCCTAAG
* * * * * * * * *
44348 TCAACACATGAAATGAGCGTGCAGGCGCTCAGTCGGCCAGATGGGCGGGATGTGCAAACCAGGGA
388 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* ** * * * *
44413 TCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGTCTGGTCCGATCCT
453 TCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
** * * * *
44478 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATAAGCAGGCGGGCGAGCAGGCGG
518 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGA-CAAA-ACG-A-GCGGGCGGGCGGGC-G
* *
44543 GCACTACACCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
578 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
44608 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
643 GGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
44673 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAATTTCAAAA
708 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
* * * * *
44738 CTTTTTGCGGTTCGATATTTTTTGAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTCGTAGAC
773 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
44803 ATGATCCTTTTA-TTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAACTCGAAGTGTAC
838 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
44861 AAGA-TTTGTGACGA-TTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGAAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
44923 ACC-GTAAAATCTCGAAA-GCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
66 ACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
44986 GGCCAATATAAAGGCCAAGCACCAG-ATCCCATTGCACATCATGTGCGCACACCCCCCGGCCCCC
130 GGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* *
45050 CCGATCGCCGGAACCCCAATGCTGTCGGTCAGGTTCT-C--C---G----G-CGATGGTGCCCCG
194 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
** * * * * * * *
45104 ATGAAGAAAAATACGTCACCAACACATGCCTGAGCCCAGAATGTGTTGCTGCAACCCTTGGTCCG
259 GCGAAGAAAAATGCGACACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * ** **
45169 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAGACTGGGAATGAACTCCATATTTACTAA
323 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTA-TGCCTAA
* * * * * * * *
45234 GTCAACACAAGAAATGAGCGTGCGGGCACTCAGCCGGCCAGAGGGG-AGGATACACAAGCTGGGG
387 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * *
45298 ATC-GAC-GGTCCCCCTCTGTGTGCTGCCGATCTTACTGCCACAACCCTCGGTCTGGTCTGATCT
452 ATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCT
* * * * *
45361 TAGACT-GGAATGAACTCCGTACGCCTAAGCCAACCAACAAAAC-A----GCGTGC--G-AGCAC
517 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGCAC
* * *
45417 TATGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCA
582 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * *
45482 CATCTTCATATTTCTTGCATGCCGATGCCATTTTTGTGGCTTCTAAATTCATACAATGGTCCCTT
647 CATCTTCATATTTC-TACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* **
45547 AAGCTTTCACGTGAAGTTTCATGGCAAGTTGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
711 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
* * * *
45612 TTTGAGCGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACGT
776 TTTGCG-GTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
45677 GATCCTTATATTTTT-TTGGCATGCATAAAAAAATTCAGCT---AA----AA----AC
840 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
45723 ---------T---C---------AAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
1 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * ** *
45767 ACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGACTTCTCGAAGCTTGATGAGGGCCAGAGG
66 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
45832 GCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCTCCAGCCGCTC
131 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCC
* * *
45897 CGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTTCGACGATGGTG---C--
195 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
* * * * *
45957 C-----------C--CA--A-C-C---CCGAGCCCAGCATGTGCGGTCGTAACCCTTGGTTCGGT
260 CGAAGAAAAATGCGACACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
46002 CCAATGTTAGACTGGGAATGAAATCCGTATGCTTCGACTA-GAATGAACTC-GTATGCCTAAGTC
325 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTC
* * * * *
46065 AACTCACGAAACAAGCGTGCAGGCGCTCAGCCGGCCAGATGGACGGGATGCGCAAAGCCGGGGAT
390 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGCCGGGGAT
* * * * * * * *
46130 CGGCCGGGGTCGCCCTTTGCGTGTTGCCGATCCTGTTGCCGCAA-CCTCGGTCCGATCTGATC-T
454 CGGTC-GGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * *
46193 AGACTGGGAATGAACTCC-TATGCCTAAGCCAATCAACGAAACGAGCGGGCGGGC--G-GGCACT
518 AGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGCACT
* *
46254 ACGCCGGCCAGAGAGAC-GGATGCGCAAGCCGT-GATCGGTTAGGGTGGTAGGTGCGTTTAGGCA
583 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-GATAGGGTGGTAGGTGGGTTTAGGCA
*
46317 CATCTTCATATTTCTACGT-CCAAT-CGCATTTTTATGGC-TGTTAAATTCATACAATGGTCCTT
647 CATCTTCATATTTCTACGTGCCAATGC-CATTTTTATGGCTTG-TAAATTCATACAATGGTCCCT
**
46379 TAAG-CTTCACTGTGAAGTTTCAT-GCAAGACGACTCGTTTTTCTATTTTTCACGATTTTTGAAA
710 TAAGCCTTCAC-GTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTCAAAA
* * * *
46442 CTTTTTACGGTTC-AGA-TTTTTAAAATTTTTTTCGGGAAGAGGGTTTCGGCCCCAAACTTGGTA
773 CTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTC-AGAAG-GAGTTTTGGCCCCAAACTTGGTA
* * *
46505 GACGTGATTCTTGTATTTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAGCTCGAAGTGTAC
835 GACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
46568 AAGATTTTGTGA-CATTTTGAAAAAATTGTCTTCAATTT-AGACACTTTAA-GGCTACTTGGCAG
1 AAGATTTTGTGACCA-TTTGAAAAAAGTGTC-CCCATTTCAGACACTTTAATGGCTAC-TGGCAG
*
46630 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGA
63 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
Statistics
Matches: 3973, Mismatches: 458, Indels: 239
0.85 0.10 0.05
Matches are distributed among these distances:
828 43 0.01
829 8 0.00
830 30 0.01
831 102 0.03
832 58 0.01
833 144 0.04
834 25 0.01
835 63 0.02
836 28 0.01
837 2 0.00
839 2 0.00
841 3 0.00
844 47 0.01
845 99 0.02
846 41 0.01
847 1 0.00
849 1 0.00
852 1 0.00
854 3 0.00
856 2 0.00
857 8 0.00
862 2 0.00
865 6 0.00
866 80 0.02
867 5 0.00
870 80 0.02
871 111 0.03
872 86 0.02
873 4 0.00
874 5 0.00
879 1 0.00
881 1 0.00
882 3 0.00
883 28 0.01
884 58 0.01
885 3 0.00
886 129 0.03
887 47 0.01
891 1 0.00
894 1 0.00
896 1 0.00
897 209 0.05
898 695 0.17
899 321 0.08
900 165 0.04
901 214 0.05
902 424 0.11
903 576 0.14
904 3 0.00
905 2 0.00
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGC
GAAGAAAAATGCGACACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
CTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCGGCACTACG
CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC
GGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
Done.