Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167970.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46402
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Found at i:1123 original size:25 final size:26
Alignment explanation
Indices: 1086--1137 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
1076 CTGGTCCGAT
1086 CTTAGACTAGGAATGAAC-TCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
1111 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
1137 C
1 C
1138 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:3798 original size:20 final size:20
Alignment explanation
Indices: 3773--3815 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
3763 GATCGGTTTG
3773 TTGTGATCTATAGCCAGACT
1 TTGTGATCTATAGCCAGACT
3793 TTGTGATCTATAGCCAGACT
1 TTGTGATCTATAGCCAGACT
3813 TTG
1 TTG
3816 GGAGAGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (20 bp):
TTGTGATCTATAGCCAGACT
Found at i:8707 original size:886 final size:881
Alignment explanation
Indices: 6726--8932 Score: 3204
Period size: 883 Copynumber: 2.5 Consensus size: 881
6716 ATCTGATCTT
* ** * * *
6726 AGACTGGGAATGAACTCCATATGCCTAAGCCAATTGATGAAAGGAGCGGGCGGGCGAGCACTACG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACG
* * * *
6791 CCGGCCAAAGAGATAGGATGCACAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTACGCACATC
66 CCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
6856 TTCATATTTCTGCCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
131 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
6921 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAATTTTGAAACTTTTTA
196 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-AATTTTTGAAACTTTTTA
6986 TGGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATC
260 TGGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATC
*
7051 CTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
325 CTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
7116 ACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAAT
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAAT
* * *
7181 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATG
454 CTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
7246 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCCCCCAATCGCCGGAACCC
519 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCCCCCAATCGCCGGAACCC
* * * * *
7311 CAATGCGGCCGATCAGGTTCTCTGACGATGGTGCCCCGGGTGAAAAAAAATATGGCACCAGCACA
584 CAATGCCGCCGATCAGGTTCTCCGACGATGGTGCCCCAGGCGAAAAAAAATACGGCACCAGCACA
* * ** * * *
7376 TGCCTGAGCGCAGCATGTGCACCCGTAACCCTCAGTCTGATCCGATCATACACTAGGATTGAACT
649 AGCCTGAGCCCAGCATGAACACCCGCAACCCTCAGTCCGATCCGATCATACACTAGGAATGAACT
* * *
7441 CCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACAAGC
714 CCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAAGC
* ** * * *
7506 GCTCAGCCGACCAGAGGGGCAAGATGCGCAAATTGGGGATTGGTCAGGTCCCCCCTACGTGCTGC
779 GCTCAGCCGACCAGAGGGGCAAGATGCACAAACCGGAGATTGGTCAGGTCCCCCCTACATGCTGA
* * * * *
7571 TGATCTTGTTGCTGCAACCCTCCGTCTGGTCCAATATT
844 TGATCTTGCTGCTGCAACCCTCAGTCCGATCCAATATA
*
7609 AGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACG
* * * ** * *
7674 CCAGCTAAAGAGTTGGGATAAGTAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATC
66 CCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** *
7739 TTCATATTTTTTCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGC
131 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
7804 CTTCATGTGAAGTTTCATGGCTAGACGACTTGTTTTCTATTTTTCAAGATTTTTGAAACTTTTT-
196 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAA-ATTTTTGAAACTTTTTA
* * * * * *
7868 TCGGTTCGGGA-TTTTTTTAAATTTTTTTCAAAAGGCGTTCTGGCCCCAAACTTGGTAGATGTGA
260 T-GGTTCGAGATTTTTTTTAAA-TTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGA
*
7932 TCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
323 TCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* * *
7997 GACCATTTG-AAAAAGTATCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
388 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
*
8061 TCTCAGATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
453 TCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * *
8126 GGGCCAAGTACCAGCACCCATCGTAGATCATGTGCGCACAACCCCC-CGTCCCCTAATCGTCGGA
518 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCAC--CCCCCAATCGCCGGA
*
8190 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCCAGGCGAAAAAACAAATACGGCACC
580 ACCCCAATGCCGCCGATCAGGTTCTCCGACGATGGTGCCCCAGGCG-AAAAA-AAATACGGCACC
* ** * *
8255 AGGACAAG-CTCGAGCCCAGCATGAACACTTGCAACCCTCAGTCCGGTCCGATCTTACACT-GAG
643 AGCACAAGCCT-GAGCCCAGCATGAACACCCGCAACCCTCAGTCCGATCCGATCATACACTAG-G
*
8318 AATGAACTCCATATGCTTAGACTGGAAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
706 AATGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* ** * * *
8383 GTGCGGGCGCTCAGCCGACCAGAGGGGCATGATGCACAAGCCGGAGATTGGTCGGGTCCCCCCCT
771 GTACAAGCGCTCAGCCGACCAGAGGGGCAAGATGCACAAACCGGAGATTGGTCAGGT-CCCCCCT
*
8448 ACATGCTGATGATCTTGCTG-TCGCAACCCTCAGTCCGATCCAATGTA
835 ACATGCTGATGATCTTGCTGCT-GCAACCCTCAGTCCGATCCAATATA
* * * * *
8495 AGACTAGGAATTAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGACGGACGGGCACTACG
1 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACG
* * * * *
8560 TCGGCCAGAGAGGTGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATC
66 CCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
8625 TTCATATTTTTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATATAATGGTCCCTTAAGC
131 TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* **
8690 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCCTCATTTTTGAAACTTTTTA
196 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-CAAATTTTTGAAACTTTTTA
* * * *
8755 TGGTTCAAGATTTTTTTTAAATTTTTTCAGAAGTAGTTTTAGCCCCACACTTGGTAGACATGATC
260 TGGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATC
* * * *
8820 CTTGTATTTTTGTTGGCGTGCACAAAAAATTTGAGCTAAAAACTCGAATTGAACAGGATTTTGTG
325 CTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
8885 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGTTACTGG
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
8933 GTTTAGGCAC
Statistics
Matches: 1172, Mismatches: 135, Indels: 29
0.88 0.10 0.02
Matches are distributed among these distances:
881 150 0.13
882 59 0.05
883 359 0.31
884 8 0.01
885 166 0.14
886 344 0.29
887 51 0.04
888 35 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (881 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACG
CCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAATTTTTGAAACTTTTTAT
GGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
CAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACCCCCCAATCGCCGGAACCCCA
ATGCCGCCGATCAGGTTCTCCGACGATGGTGCCCCAGGCGAAAAAAAATACGGCACCAGCACAAG
CCTGAGCCCAGCATGAACACCCGCAACCCTCAGTCCGATCCGATCATACACTAGGAATGAACTCC
ATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAAGCGC
TCAGCCGACCAGAGGGGCAAGATGCACAAACCGGAGATTGGTCAGGTCCCCCCTACATGCTGATG
ATCTTGCTGCTGCAACCCTCAGTCCGATCCAATATA
Found at i:11154 original size:17 final size:17
Alignment explanation
Indices: 11132--11171 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
11122 GTTTTTAAGA
11132 GGTTTT-GAATTTTAGG
1 GGTTTTGGAATTTTAGG
*
11148 GGATTTTGGATTTTTAGG
1 GG-TTTTGGAATTTTAGG
11166 GGTTTT
1 GGTTTT
11172 AAAAACTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 8 0.38
18 11 0.52
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.53
Consensus pattern (17 bp):
GGTTTTGGAATTTTAGG
Found at i:12560 original size:14 final size:13
Alignment explanation
Indices: 12541--12581 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
12531 GTTTTTTTGC
12541 TATTTTTTTGTAT
1 TATTTTTTTGTAT
*
12554 TATTTTTTGGTATT
1 TATTTTTTTGTA-T
12568 TATTTTTTTGTAT
1 TATTTTTTTGTAT
12581 T
1 T
12582 TCGTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.76
Consensus pattern (13 bp):
TATTTTTTTGTAT
Found at i:12582 original size:14 final size:14
Alignment explanation
Indices: 12541--12582 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
12531 GTTTTTTTGC
12541 TATTTTTTTGTA-T
1 TATTTTTTTGTATT
*
12554 TATTTTTTGGTATT
1 TATTTTTTTGTATT
12568 TATTTTTTTGTATT
1 TATTTTTTTGTATT
12582 T
1 T
12583 CGTATAATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (14 bp):
TATTTTTTTGTATT
Found at i:12948 original size:88 final size:88
Alignment explanation
Indices: 12736--13079 Score: 406
Period size: 87 Copynumber: 3.9 Consensus size: 88
12726 ATAAAACAAT
* * * *
12736 TGGGATAACATCGTAAGTTTAAAAAAATAAATAAATCGATCGAGATAACACACGCGAATCAAAAT
1 TGGGATAACATCGTAAG--TCAAAAGATAAA-GAATCGATCGGGATAACAC-CGCGAATCAAAAT
* * * *
12801 TATGCCCGGAGATCTTACAGAATAGAC
62 TATGCTCGAAGGTCTTACAGAATCGAC
* * * *
12828 TGGGATAACATCG-CAGTCAAAAGATAAAGAATCGATTGGGATAACACCACGAATCGAAATTATG
1 TGGGATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATTATG
* *
12892 -TCCGAAGGTCCTACAAAATCGAC
66 CT-CGAAGGTCTTACAGAATCGAC
* * *
12915 TGGGATAACATCGTAAGTTAAAAGATAAAGAATCGATCGGGATAACACTGCGAATCAAAATTACG
1 TGGGATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATTATG
*
12980 CTCGGAGGTCTTACAGAATC-AC
66 CTCGAAGGTCTTACAGAATCGAC
* * * * * *
13002 TGGAATAAAATCATAAGTCGAAAGATAAGGAATCGATCGGGATAACACCGTGAATCAAAATTATG
1 TGGGATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATTATG
13067 CTCGAAGGTCTTA
66 CTCGAAGGTCTTA
13080 GAAATCGTGC
Statistics
Matches: 215, Mismatches: 34, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
87 114 0.53
88 75 0.35
89 11 0.05
91 2 0.01
92 13 0.06
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (88 bp):
TGGGATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATTATG
CTCGAAGGTCTTACAGAATCGAC
Found at i:13037 original size:175 final size:179
Alignment explanation
Indices: 12736--13076 Score: 460
Period size: 175 Copynumber: 1.9 Consensus size: 179
12726 ATAAAACAAT
12736 TGGGATAACATCGTAAGTTTAAAAAAATAAATAAATCGATCGAGATAACACACGCGAATCAAAAT
1 TGGGATAACATCGTAAGTTTAAAAAAATAAATAAATCGATCGAGATAACACACGCGAATCAAAAT
* * * * * *
12801 TATGCCCGGAGATCTTACAGAATAGACTGGGATAACATCGCAGTCAAAAGATAAAGAATCGATTG
66 TACGCCCGGAGATCTTACAGAATACACTGGAATAAAATCGAAGTCAAAAGATAAAGAATCGATCG
*
12866 GGATAACACCACGAATCGAAATTATG-TCCGAAGGTCCTACAAAATCGAC
131 GGATAACACCACGAATCAAAATTATGCT-CGAAGGTCCTACAAAATCGAC
* * * *
12915 TGGGATAACATCGTAAG-TT-AAAAGATAAA-GAATCGATCGGGATAACAC-TGCGAATCAAAAT
1 TGGGATAACATCGTAAGTTTAAAAAAATAAATAAATCGATCGAGATAACACACGCGAATCAAAAT
* * * * *
12976 TACGCTCGGAGGTCTTACAGAAT-CACTGGAATAAAATCATAAGTCGAAAGATAAGGAATCGATC
66 TACGCCCGGAGATCTTACAGAATACACTGGAATAAAATC-GAAGTCAAAAGATAAAGAATCGATC
**
13040 GGGATAACACCGTGAATCAAAATTATGCTCGAAGGTC
130 GGGATAACACCACGAATCAAAATTATGCTCGAAGGTC
13077 TTAGAAATCG
Statistics
Matches: 142, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
174 12 0.08
175 84 0.59
176 18 0.13
177 9 0.06
178 2 0.01
179 17 0.12
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (179 bp):
TGGGATAACATCGTAAGTTTAAAAAAATAAATAAATCGATCGAGATAACACACGCGAATCAAAAT
TACGCCCGGAGATCTTACAGAATACACTGGAATAAAATCGAAGTCAAAAGATAAAGAATCGATCG
GGATAACACCACGAATCAAAATTATGCTCGAAGGTCCTACAAAATCGAC
Found at i:13090 original size:22 final size:23
Alignment explanation
Indices: 13064--13130 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
13054 AATCAAAATT
*
13064 ATGCTCGAAGGTCTTAGA-AATC
1 ATGCTCGAAGGTCTTACAGAATC
* *
13086 GTGCTCAAAGGTCTTACAGAATC
1 ATGCTCGAAGGTCTTACAGAATC
* *
13109 ATGCCCGGAGGTCTTACAGAAT
1 ATGCTCGAAGGTCTTACAGAAT
13131 TGACTCGAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 15 0.41
23 22 0.59
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (23 bp):
ATGCTCGAAGGTCTTACAGAATC
Found at i:13406 original size:13 final size:14
Alignment explanation
Indices: 13388--13417 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
13378 AACATTAAAA
13388 TTTGAAAAT-TTTT
1 TTTGAAAATGTTTT
13401 TTTGAAAATGTTTT
1 TTTGAAAATGTTTT
13415 TTT
1 TTT
13418 TTTTTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (14 bp):
TTTGAAAATGTTTT
Found at i:13954 original size:33 final size:32
Alignment explanation
Indices: 13875--14217 Score: 315
Period size: 33 Copynumber: 10.5 Consensus size: 32
13865 TTGGGGCTAA
* *
13875 ATAAACTTGGCTTAAAT-TT-ATTGAAGGCTAG
1 ATAAACTGGGCTTAAATCTTCATTGAA-GCCAG
*
13906 CTAAACTGGGCTTAAATCTTCATTTGAAGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* * * * *
13939 ATAAACTAGGTTTAAAACTTTATTGATGACCAG
1 ATAAACTGGGCTTAAATCTTCATTGAAG-CCAG
* *
13972 ATGAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
14005 ATAAACTGGGCTTAAAGT-TTCATTGAGAGCCAG
1 ATAAACTGGGCTTAAA-TCTTCATTGA-AGCCAG
* * *
14038 ATAAACTAGGCTTAAAGCTTCATT-AATCGCTAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
** *
14071 ATAAACTAAGCTTAAATC-TCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
*
14103 ATAAACTGGGCTTAAATCTTCATTTAAAGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* *
14136 ATAAACTGGGCTTAAATTTTCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
* *
14169 ATAAA-TAGGCTTAAAACTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
14201 ATAAACTGGGCTTAAAT
1 ATAAACTGGGCTTAAAT
14218 TTTATTTTAT
Statistics
Matches: 255, Mismatches: 37, Indels: 38
0.77 0.11 0.12
Matches are distributed among these distances:
31 17 0.07
32 62 0.24
33 165 0.65
34 10 0.04
35 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (32 bp):
ATAAACTGGGCTTAAATCTTCATTGAAGCCAG
Found at i:13979 original size:66 final size:66
Alignment explanation
Indices: 13907--14216 Score: 348
Period size: 66 Copynumber: 4.7 Consensus size: 66
13897 GAAGGCTAGC
* * *
13907 TAAACTGGGCTTAAATCTTCATTTGAA-GCCAGATAAACTAGGTTTAAAACTTT-ATTGATGACC
1 TAAACTGGGCTTAAAGCTTCA-TT-AATGCCAGATAAACTGGGCTTAAAACTTTCATTGATGACC
13970 AGA
64 AGA
* *
13973 TGAACTGGGCTTAAAGCTTCATTAATGGCCAGATAAACTGGGCTT-AAAGTTTCATTGA-GAGCC
1 TAAACTGGGCTTAAAGCTTCATTAAT-GCCAGATAAACTGGGCTTAAAACTTTCATTGATGA-CC
14036 AGA
64 AGA
* * ** * *
14039 TAAACTAGGCTTAAAGCTTCATTAATCGCTAGATAAACTAAGCTT-AAA-TCTCATTGATGGCCA
1 TAAACTGGGCTTAAAGCTTCATTAAT-GCCAGATAAACTGGGCTTAAAACTTTCATTGATGACCA
14102 GA
65 GA
* * * *
14104 TAAACTGGGCTTAAATCTTCATTTAAAGCCAGATAAACTGGGCTT-AAATTTTCATTGATGGCCA
1 TAAACTGGGCTTAAAGCTTCA-TTAATGCCAGATAAACTGGGCTTAAAACTTTCATTGATGACCA
14168 GA
65 GA
* *
14170 TAAA-TAGGCTTAAAACTTCATTAATGGCCAGATAAACTGGGCTTAAA
1 TAAACTGGGCTTAAAGCTTCATTAAT-GCCAGATAAACTGGGCTTAAA
14217 TTTTATTTTA
Statistics
Matches: 212, Mismatches: 23, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
64 6 0.03
65 92 0.43
66 114 0.54
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (66 bp):
TAAACTGGGCTTAAAGCTTCATTAATGCCAGATAAACTGGGCTTAAAACTTTCATTGATGACCAG
A
Found at i:14125 original size:98 final size:97
Alignment explanation
Indices: 13875--14217 Score: 410
Period size: 98 Copynumber: 3.5 Consensus size: 97
13865 TTGGGGCTAA
* * *
13875 ATAAACTTGGCTTAAAT-TT-ATTGAA-GGCTAGCTAAACTGGGCTTAAATCTTCATTTGAAGCC
1 ATAAACTAGGCTTAAATCTTCATT-AATGGCCAGATAAACTGGGCTTAAATCTTCA-TTGAAGCC
* *
13937 AGATAAACTAGGTTTAAAACTTTATTGATGACCAG
64 AGATAAACTAGGCTTAAAACTTCATTGATG-CCAG
* * *
13972 ATGAACTGGGCTTAAAGCTTCATTAATGGCCAGATAAACTGGGCTTAAAGT-TTCATTGAGAGCC
1 ATAAACTAGGCTTAAATCTTCATTAATGGCCAGATAAACTGGGCTTAAA-TCTTCATTGA-AGCC
* * *
14036 AGATAAACTAGGCTTAAAGCTTCATTAATCGCTAG
64 AGATAAACTAGGCTTAAAACTTCATTGAT-GCCAG
* * *
14071 ATAAACTAAGCTTAAATC-TCATTGATGGCCAGATAAACTGGGCTTAAATCTTCATTTAAAGCCA
1 ATAAACTAGGCTTAAATCTTCATTAATGGCCAGATAAACTGGGCTTAAATCTTCA-TTGAAGCCA
* **
14135 GATAAACTGGGCTTAAATTTTCATTGATGGCCAG
65 GATAAACTAGGCTTAAAACTTCATTGAT-GCCAG
*
14169 ATAAA-TAGGCTTAAAACTTCATTAATGGCCAGATAAACTGGGCTTAAAT
1 ATAAACTAGGCTTAAATCTTCATTAATGGCCAGATAAACTGGGCTTAAAT
14218 TTTATTTTAT
Statistics
Matches: 212, Mismatches: 25, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
97 25 0.12
98 109 0.51
99 76 0.36
100 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (97 bp):
ATAAACTAGGCTTAAATCTTCATTAATGGCCAGATAAACTGGGCTTAAATCTTCATTGAAGCCAG
ATAAACTAGGCTTAAAACTTCATTGATGCCAG
Found at i:14226 original size:5 final size:5
Alignment explanation
Indices: 14216--14246 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
14206 CTGGGCTTAA
14216 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
14247 GAATTTGGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:15511 original size:11 final size:11
Alignment explanation
Indices: 15483--15530 Score: 53
Period size: 11 Copynumber: 4.3 Consensus size: 11
15473 TCATAACCAA
*
15483 TTTTTTCTTCT
1 TTTTTTTTTCT
15494 TTTTTTTTTCT
1 TTTTTTTTTCT
*
15505 TTTTTTTGTTGT
1 TTTTTTT-TTCT
15517 TTTTATTTTT-T
1 TTTT-TTTTTCT
15528 TTT
1 TTT
15531 ATGCCTTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 21 0.64
12 9 0.27
13 3 0.09
ACGTcount: A:0.02, C:0.06, G:0.04, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:21652 original size:20 final size:21
Alignment explanation
Indices: 21627--21668 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
21617 GGCGGTCCAA
21627 TGGTTC-GGACCGGCTCAGAT
1 TGGTTCAGGACCGGCTCAGAT
21647 TGGTTCAATGGACCGGCTCAGA
1 TGGTTC-A-GGACCGGCTCAGA
21669 GGTTGGATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
23 13 0.68
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (21 bp):
TGGTTCAGGACCGGCTCAGAT
Found at i:22516 original size:15 final size:14
Alignment explanation
Indices: 22482--22523 Score: 61
Period size: 15 Copynumber: 3.1 Consensus size: 14
22472 TATTTTTTGC
22482 TATTTTTT-GTA-T
1 TATTTTTTGGTATT
22494 TATTTTTTGGTATT
1 TATTTTTTGGTATT
22508 TATTTTTTTGGTATT
1 TA-TTTTTTGGTATT
22523 T
1 T
22524 TGTATAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.30
13 3 0.11
14 3 0.11
15 13 0.48
ACGTcount: A:0.14, C:0.00, G:0.12, T:0.74
Consensus pattern (14 bp):
TATTTTTTGGTATT
Found at i:22781 original size:26 final size:26
Alignment explanation
Indices: 22742--22794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22732 CTGGTCAAAT
*
22742 CTTAGACTGGGAACGAACTCCGTATA
1 CTTAGACTGCGAACGAACTCCGTATA
* *
22768 CTTAGATTGCGAACGAACTTCGTATA
1 CTTAGACTGCGAACGAACTCCGTATA
22794 C
1 C
22795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAACGAACTCCGTATA
Found at i:24516 original size:873 final size:871
Alignment explanation
Indices: 22782--28020 Score: 4525
Period size: 873 Copynumber: 5.9 Consensus size: 871
22772 GATTGCGAAC
* * * ** ** * *
22782 GAACTTCGTATACCTAAGTCAACCAACGAAACGAGTGTATGAGCGCTCAGCCGGCCAG-AGAGGC
1 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCAACCGGCCAGAAG-GGC
* ** * * * * *
22846 AGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCCCTGCGTGCTACCGATCTTGCTGCCGCAACC
65 AGGATGCACAAGCCAGGGATCGACCGGGTCCCCCCCTGCATGCTGCCAATCCTGCTGCGGCAACC
* * * * * * * ** **
22910 -CTCGACCCGATCCAATCTTAGACTGGGAATGACCTCCGTATGCCTAAGCCAGTCGACGAAATAA
130 TCTGGA-CTGGTCTAATCTTAGACCGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * *
22974 GCGAGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGA
194 GCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
23039 TAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTATGGCTTGTAAATT
259 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
23104 CATACAATGGCCCCTTAAGCCTTCATGTGAAGTTTCCTGGCAAGACGACTCCTTTTCTATTTTTC
324 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * ** * *
23169 ATGATTTTTGAAACTTTTTACGATTCAAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGACC
389 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* *
23234 CAAACTTGGTAGACGTGATCCTTGAATTTTTGTTGGCATGCACTAAAAAATTCAGCTAAAAACTC
454 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
23299 GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
519 GAAGTGTACAGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
23364 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCAAGTTTTGATGAG
584 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* *
23429 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACAACCCCC
649 GCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCC
* * * **
23494 CCGGCCCCCAATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGAGGATGCTCCGGTGATGG
713 CCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
** * * * * * *
23559 TGCTTCGGGCGAAAAAAAATAC-GACACCAGCACATGCCCAAGCCCAGCATGTGCACCCAGAAAA
778 TGCCCCGGGTGAAAAAAAATGCAG-CACCAACACATGCCCGAGCCCAGCATGTGCACCC-GCAAC
*
23623 CCTCGGTCCAATCTGATCTTACACTGGGAAT
841 CCTCGGTCCAGTCTGATCTTACACTGGGAAT
* *
23654 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGCGCTCAACCGGCCAGAAGGGCA
1 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCAACCGGCCAGAAGGGCA
* * *
23719 GGATGCACAAGTCGGGGATCGACCGGGTCTCCCCCTGCATGCTGCCAATCCTGCTGCGGCAACCT
66 GGATGCACAAGCCAGGGATCGACCGGGTCCCCCCCTGCATGCTGCCAATCCTGCTGCGGCAACCT
* * *
23784 TTGGACTGGTCTAATCTTAGACCGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC
131 CTGGACTGGTCTAATCTTAGACCGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * * *
23849 GGGCGGGCGGGCACTACGCCGCCCAGAGAGGCGGGATGCGTAGGCCGTGGATCGATAGGGTGGCA
196 GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * *
23914 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGTGATTTTTATGGGTTATAAATTCA
261 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
23979 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCAC
326 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * *
24044 AATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCTA
391 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* *
24109 AACTTGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGA
456 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * * *
24174 AGTGTACATGATTTTGTGACAATTTGAAAAAAGTGT-CCCATTTCAGACTCTTTAATGGCTACTG
521 AGTGTACAGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
24238 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCACGAGGTTTGATGAGGC
586 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGC
24303 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
651 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-
* *
24368 GCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGATGATGCTCCGACGATGGT
715 G-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
*** * *
24433 GCCCCGGGTGAAAAAAATATATGGCACCAACACATGCCCAAGCCCAGCATGTGCACCCGCAGCCC
779 GCCCCGGGTGAAAAAAA-ATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCACCCGCA-ACC
* *
24498 TCGTTCCGATCCGATCTTACATTGGGAATGAACTTCGTATGCTTAGACTAGGAAT
842 -C--T-CG----G-TC---CA----G--T---C-T-G-AT-CTTACACTGGGAAT
* ** * * *
24553 GAACTCCGTATGCCTAAGTCAACCCATGAAATAAACGTGCGGGAGCTCAGCCGGCCAGAAGGGCA
1 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCAACCGGCCAGAAGGGCA
* * * * *
24618 GGATGCACAAGCCAAGGATCGATCGGGTCCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCAACC-
66 GGATGCACAAGCCAGGGATCGACCGGGTCCCCCCCTGCATGCTGCCAATCCTGCTGCGGCAACCT
* * * * *
24682 CTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGAG
131 CT-GGACTGGTCTAATCTTAGACCGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * * *
24747 CTGACGGGCGGGCACTACGCCGATCGGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGT
195 CGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * * *
24812 AGGTGGGTTTAGGCACATCTTCAAATGTCTGCCCTACTAATGCCATTTTTATGGCTTGTAAATTC
260 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
24877 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
325 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * ** * *
24942 TGATTTTTGAAACTTTTTACGATTCAAGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGG-CCC
390 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
**
25006 AAACTTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCG
455 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
25070 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACATTAATGGCTACT
520 AAGTGTACAGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
25135 GACAGTAAACTTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAA-GTTTGATGAG
585 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-CAAGGTTTGATGAG
* * * * *
25199 GAATAGGGGGCCAATATAAGGGCAAAATACCAGCACCCATTGCACATCATGTGCGCACATCCCCC
649 GCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * **
25264 CGCCCCCCAATCG-CTGGAACCCCAATGCTGCCGGTCAGGTTCTATGACGATGCTCCGACGATGG
714 CGCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
* * *
25328 TGCCTCGGGTGAAAAAAAATGCAGCACCAACACATGCCTGAGCCTAGCATGTGCACCCGCAACCC
778 TGCCCCGGGTGAAAAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCACCCGCAACCC
25393 TCGGTCCAGTCTGATCTTACACTGGGAAT
843 TCGGTCCAGTCTGATCTTACACTGGGAAT
* * * *
25422 GAACTCTGTATGCTTAGACGGGGAACGAACTCCGTATGCTTAGACTGGGAACGAAC-TCCGTATG
1 GAACTCCGTATGCCTA-A----G-TC-AAC-CC--A--C---GA-----AACGAACGTGCG--TG
** * * ** * ** **
25486 C-CTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCCCAACCGGCCAGAGGGGCAGATGCACAAG
44 CGC----TCAACCGGCCAGA--AG-G-GCAGGATGCACAA---GCCAG-GGATC-GA--C-CGGG
***** * ** * * *
25549 T-CAGGGAT-CGATTG-AGTCC-CCCCTGTGTGCTGGCGATCCTACTACTGCAACCCTCGGTCAA
93 TCCCCCCCTGC-A-TGCTG-CCAATCCTG-CTGC-GGC-A-AC--CT-CTG-GA--CT--G----
* * * * *
25610 GTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGC
139 GTCTAATCTTAGACCGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
** * * *
25675 GGGCACTACGCCGATGAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTT
204 GGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
25740 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAAGGCTTGTAAATTCATATAATGG
269 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
25805 TCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
334 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
25870 AAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAAAAGGA-TGTTTGGCCCCAAACCTGG
399 AAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGT-TTTGGCCCCAAACTTGG
* * *
25934 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTCACAACTCGAAGTGTAC
463 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
25999 AGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
528 AGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
** *
26064 ACCTGTAAAATCTCAAATGCTCTTTAAGATGGTGTGAGTTCTCAAGGCTTGATGAGGCATAGGGG
593 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGGG
* *
26129 GCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACATCACCCCCGCCCCCC
658 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGCCCCCC
* *
26194 AATCG-CTGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGG
722 AATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGG
* *
26258 GTGAAAAAAAATGCAGCACCAACACATGCCTGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCA
786 GTGAAAAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCA
26323 GTCTGATCTTACACTGGGAAT
851 GTCTGATCTTACACTGGGAAT
* * ** * * ** * * ** **
26344 GAACTCTGTATG-CTTAG---A--CGGGGAACGAAC-TCCGTATGCTTAGACTGGGAACGAA-CT
1 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCA-ACCGGCCA-GAAGGG
* * * * * * * *
26401 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCAACCGGCCAGAGGGGCA-GATG
64 CAGGATG-C--A--CAAGCCAGGGATCGA-C---CGGGT-CCC--CC--CC-----TGCATGCTG
** * * * * * * * * * **
26465 CACAAGTCAGGGAT-CGGTTGAGTCCCCCCTGTGTGCTGG-C-GATCCTACTA-CTGCAA--CCC
110 C-CAA-TC-CTGCTGCGG--CA---ACCTCTG-G-ACTGGTCTAATCTTA-GACCGGCAATGAAC
* * * * ** * * * * * *** * * * *
26524 TCGGTCAAGTCTAATCTTA--GACTGGGAATGAAC--TC-TGTATGC-TTAAGCCAACCGATGAA
164 TCCGT-ATGCCTAAGCCAACCGAC--GAAACGAGCGGGCGGGCGGGCACTACGCCGACC-A-GAG
* * ** * * * * * * * * * **
26583 ACGAGC-GGACGGGCGGGCAC-TACG-CCGATGAGAGAGGCGAGATGCG--CAAGC-CATGGATC
224 A-G-GCGGGATGCGCAAGC-CGT-GGATCGAT-AGGGTGG-TAGGTGGGTTTAGGCACAT-CTTC
* *** * * * * * ** * **
26642 GATAGGTTGGTAGGTGGGTTTAGGCACAT-CTTCATATTTCTGCCATGCCAATGCCATTTTTAAG
282 -ATA--TT--T--CT-GCCAT-GCCA-ATGC--CATTTTTATGGCTTGTAAAT-TCA--TACAA-
* *** *
26706 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCGTT
331 --TGGTCCCTT-A---------------AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
26771 TTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGG
378 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
*
26836 A-TGTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTC
443 AGT-TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
26899 AGCTCACAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAAATGTCCCCATTTCAGACAC
507 AGCTAAAAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* **
26964 TTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGATGGTGTGAGTTCTCA
572 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
27029 AGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGGACATCATGTG
637 AGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
27094 CGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCTGTCGGCCAGGTTCTCCGACGATGC
702 CGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* *
27159 TCCGGCGATGGTGCCCCGGG-GAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGC
767 TCCGACGATGGTGCCCCGGGTGAAAAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGC
* * *
27223 ACTCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
832 ACCCGCAA-CC-C--TC-G----G-TC---CA----G--T---CT--G-AT-CTTACACTGGGAA
27288 T
871 T
* * * * * *
27289 GAACT-CGATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGTCAGCCGGCCAGAGGGGT
1 GAACTCCG-TATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCAACCGGCCAGAAGGGC
* * * ** ** * *
27353 AGGATGCACAAGCCAGGGATCGATCGGGTCCCCCCCTACGTGCTATCAATCCTATTACGACAACC
65 AGGATGCACAAGCCAGGGATCGACCGGGTCCCCCCCTGCATGCTGCCAATCCTGCTGCGGCAACC
* * * * * * *
27418 -CTCGATCTGATCTGATCTTATACTGGCAATGAACTCCATATGCCTAAGCCAACCGACAAAACGA
130 TCTGGA-CTGGTCTAATCTTAGACCGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
27482 GCGGGCGGGCGGGCACTATGTCTG-CCA-A-A-----GA---G---G-TG-GGATCGATAGTGTG
194 GCGGGCGGGCGGGCACTACG-CCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
*
27531 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCATTTTTATGGCTTGTAAAT
258 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
27596 TCATACAACGGTCCCTTATG-GTGTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
323 TCATACAATGGTCCCTTAAGCCT-TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
*
27660 T--C-A----TG--A----TT----TT---G----------------TTCAGAAGGATTTTTGGC
387 TCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
* * * * *
27689 CCCAAACTTGGTAGACATGATCCTTGTAGTTTTGTTGGCATGCACAAAAACATTCAACTCAAAAC
452 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
27754 TCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
517 TCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
** * *
27819 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAACTGGGTGTGAGTTCTCGAGGTTTGATA
582 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* *
27884 AGGGATA-GGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
647 AGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * ** *
27948 CTCCGCCTCACCAATCGTCGGAACCCCAATGCCGCCAGTCAGGTTTTTCGGTGATGCTCCGACAA
712 C-CCGCC-CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGA
28013 TGGTGCCC
775 TGGTGCCC
28021 TGGGCAGATT
Statistics
Matches: 3599, Mismatches: 526, Indels: 510
0.78 0.11 0.11
Matches are distributed among these distances:
844 69 0.02
845 195 0.05
846 54 0.02
860 1 0.00
863 2 0.00
867 2 0.00
869 26 0.01
870 3 0.00
871 10 0.00
872 220 0.06
873 483 0.13
874 41 0.01
875 3 0.00
876 4 0.00
877 4 0.00
878 4 0.00
879 2 0.00
880 42 0.01
882 3 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 9 0.00
887 4 0.00
888 15 0.00
889 33 0.01
890 33 0.01
891 20 0.01
892 9 0.00
893 11 0.00
894 7 0.00
895 43 0.01
896 98 0.03
897 64 0.02
898 186 0.05
899 426 0.12
900 23 0.01
901 11 0.00
902 18 0.01
903 16 0.00
904 14 0.00
905 4 0.00
906 7 0.00
907 2 0.00
908 2 0.00
909 1 0.00
910 3 0.00
911 8 0.00
912 9 0.00
913 11 0.00
914 3 0.00
915 2 0.00
916 1 0.00
918 2 0.00
919 327 0.09
920 120 0.03
921 448 0.12
922 277 0.08
923 2 0.00
924 5 0.00
925 5 0.00
926 12 0.00
927 14 0.00
928 6 0.00
929 7 0.00
930 5 0.00
931 9 0.00
932 7 0.00
933 2 0.00
936 1 0.00
937 2 0.00
938 1 0.00
939 2 0.00
941 5 0.00
942 5 0.00
943 1 0.00
944 3 0.00
945 22 0.01
946 15 0.00
948 1 0.00
949 1 0.00
950 3 0.00
951 16 0.00
952 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (871 bp):
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGTGCGCTCAACCGGCCAGAAGGGCA
GGATGCACAAGCCAGGGATCGACCGGGTCCCCCCCTGCATGCTGCCAATCCTGCTGCGGCAACCT
CTGGACTGGTCTAATCTTAGACCGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAGGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGC
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
CCCGGGTGAAAAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCG
GTCCAGTCTGATCTTACACTGGGAAT
Found at i:25437 original size:26 final size:26
Alignment explanation
Indices: 25408--25486 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
25398 CCAGTCTGAT
* * *
25408 CTTACACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
25434 CTTAGACGGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
25460 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
25486 C
1 C
25487 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:26359 original size:26 final size:26
Alignment explanation
Indices: 26330--26408 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
26320 CCAGTCTGAT
* * *
26330 CTTACACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
26356 CTTAGACGGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
26382 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
26408 C
1 C
26409 CTAAGTCAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:26449 original size:922 final size:921
Alignment explanation
Indices: 24521--28019 Score: 4778
Period size: 922 Copynumber: 3.9 Consensus size: 921
24511 ATCTTACATT
* * * * * **
24521 GGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATA
1 GGGAACGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * * *
24586 AACGTGCGGGAGCTCAGCCGGCCAGAAGGGCAGGATGCACAAGCCAAGGATCGATCGGGTCCCCC
66 AGCGTGCGGGCGCCCAACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGAGTCCCCC
* * * * ** *
24651 CCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAC
131 CCTGCGTGCTGGCGATCCTACTACTGCAACCCTCGGTCAAGTCTAATCTTAGACTGGGAATGAAC
* *
24716 TCCGTATGCCTAAGCCAACCGACGAAAGGAGCTGA-CGGGCGGGCACTACGCCGATCGGAGAGGC
196 TCCGTATGCCTAAGCCAACCGACGAAACGAGC-GAGCGGGCGGGCACTACGCCGAT-GGAGAGAC
* * * *
24780 AGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATGTCTGCC
259 A-GATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
* * * *
24845 CTACTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
323 ATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * **
24910 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCAAGATTTT
388 TCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
** * *
24975 TTTTAAATTTTTTTAGAAGGA-GTTTTGG-CCCAAACTTGGTAGATATGATCCTTGTATTTTTGT
453 TTAAAAATTTTTTCAGAAGGATG-TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGT
* * * *
25038 TGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
517 TGGCATGCACAAAAAAAGTCAGCTCAAAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAA
* * * * * *
25102 AGTGTCCCCATTTCAAACACATTAATGGCTACTGACAGTAAACTTGTAAAATCACAAATGCTCTT
582 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** * * * *
25167 TAAGGGGGTGTGAGTTCTCCAA-GTTTGATGAGGAATAGGGGGCCAATATAAGGGCAAAATACCA
647 TAAGATGGTGTGAGTTCT-CAAGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCA
* *
25231 GCACCCATTGCACATCATGTGCGCACATCCCCCCGCCCCCCAATCG-CTGGAACCCCAATGCTGC
711 GCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTC-GGAACCCCAATGCTGC
**
25295 CGGTCAGGTTCTATGACGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCAGCACCAACA
775 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCAGCACCAACA
25360 CATGCCTGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAA
840 CATGCCTGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAA
25425 CTCTGTATGCTTAGACG
905 CTCTGTATGCTTAGACG
25442 GGGAACGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACG
1 GGGAACGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* *
25507 AGCGTGCGGGCGCCCAACCGGCCAGAGGGGCA-GATGCACAAGTCAGGGATCGATTGAGT-CCCC
66 AGCGTGCGGGCGCCCAACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGAGTCCCCC
*
25570 CCTGTGTGCTGGCGATCCTACTACTGCAACCCTCGGTCAAGTCTAATCTTAGACTGGGAATGAAC
131 CCTGCGTGCTGGCGATCCTACTACTGCAACCCTCGGTCAAGTCTAATCTTAGACTGGGAATGAAC
* *
25635 TCTGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCACTACGCCGATGAGAGAGACG
196 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGATG-GAGAGAC-
25700 AGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
259 AGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
*
25765 TGCCAATGCCATTTTTAAGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTT
324 TGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
25830 CAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
389 CAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
25895 TAAAAATTTTTTCAAAAGGATGTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTG
454 TAAAAATTTTTTCAGAAGGATGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
*
25960 GCATGCACAAAAAAAGTCAGCTCACAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAAG
519 GCATGCACAAAAAAAGTCAGCTCAAAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAAG
*
26025 TGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTA
584 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
26090 AGATGGTGTGAGTTCTCAAGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
649 AGATGGTGTGAGTTCTCAAGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
26155 CCCATCGGACATCATGTGCGCACATCACCCCCGCCCCCCAATCG-CTGGAACCCCAATGCTGTCG
714 CCCATCGCACATCATGTGCGCACA-CCCCCCCGCCCCCCAATCGTC-GGAACCCCAATGCTGCCG
26219 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCAGCACCAACACA
777 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCAGCACCAACACA
26284 TGCCTGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACT
842 TGCCTGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACT
26349 CTGTATGCTTAGACG
907 CTGTATGCTTAGACG
*
26364 GGGAACGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCATGAAACG
1 GGGAACGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
26429 AGCGTGCGGGTGCCCAACCGGCCAGAGGGGCA-GATGCACAAGTCAGGGATCGGTTGAGT-CCCC
66 AGCGTGCGGGCGCCCAACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGAGTCCCCC
*
26492 CCTGTGTGCTGGCGATCCTACTACTGCAACCCTCGGTCAAGTCTAATCTTAGACTGGGAATGAAC
131 CCTGCGTGCTGGCGATCCTACTACTGCAACCCTCGGTCAAGTCTAATCTTAGACTGGGAATGAAC
* * * *
26557 TCTGTATGCTTAAGCCAACCGATGAAACGAGCG-GACGGGCGGGCACTACGCCGATGAGAGAGGC
196 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGAG-CGGGCGGGCACTACGCCGATG-GAGAGAC
*
26621 GAGATGCGCAAGCCATGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
259 -AGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
26686 ATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
323 ATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
*
26751 TCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGGGATTTT
388 TCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTT
*
26816 TTAAAAATTTTTTCAGAAGGATGTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
453 TTAAAAATTTTTTCAGAAGGATGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTT
*
26880 GGCATGCACAAAAAAAGTCAGCTCACAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAA
518 GGCATGCACAAAAAAAGTCAGCTCAAAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAA
* *
26945 ATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT
583 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
27010 AAGATGGTGTGAGTTCTCAAGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGC
648 AAGATGGTGTGAGTTCTCAAGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* *
27075 ACCCATCGGACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCTGTCGG
713 ACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCTGCCGG
* * * *
27140 CCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGG-GAAAAAAAATGCAGCACCAGCACAT
778 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCAGCACCAACACAT
* * * *
27204 GCCCGAGCCCAGCATGTGCACTCACAACCCTC-G----GTCTGA---T-C-C-------G-A-TC
843 GCCTGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTC
*
27250 T-TA--C----ACT
908 TGTATGCTTAGACG
* *
27257 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT-CGATATGCCTAAGTCAACCCACGAAAC
1 GGGAACGAACTCCGTATGCTTAGACTGGGAACGAACTCCG-TATGCCTAAGTCAACCCACGAAAC
** * * *
27321 GAGCGTGCGGGCGGTCAGCCGGCCAGAGGGGTAGGATGCACAAGCCAGGGATCGATCGGGTCCCC
65 GAGCGTGCGGGCGCCCAACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGAGTCCCC
* ** * * * * * * *
27386 CCCTACGTGCTATCAATCCTATTAC-GACAACCCTCGATC-TGATCTGATCTTATACTGGCAATG
130 CCCTGCGTGCTGGCGATCCTACTACTG-CAACCCTCGGTCAAG-TCTAATCTTAGACTGGGAATG
* * * * * **
27449 AACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTATGTC--T-GCCA-A
193 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGATGGAGAGA
*
27510 -AGA---G---G-TG-GGATCGATA-GTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
258 CAGATGCGCAAGCCGTGGATCGATAGGT-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * * * *
27565 CCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTATG-GTGTCATGTGAAG
322 CATGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCATGTGAAG
*
27629 TTTCATGGCAAGACGACTCGTTTTCTATTTTT--C-A----TG--A----TT----TT---G---
386 TTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATT
* *
27671 -------------TTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAGTTTTG
451 TTTTAAAAATTTTTTCAGAAGGATGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
* * *
27723 TTGGCATGCACAAAAACATTCAACTCAAAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAA
516 TTGGCATGCACAAAAAAAGTCAGCTCAAAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAA
27788 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
581 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * * *
27853 TTAA-CTGGGTGTGAGTTCTCGAGGTTTGATAAGGGATA-GGGGTCAATATAAGGGCCAAGTACC
646 TTAAGAT-GGTGTGAGTTCTCAAGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACC
* *
27916 AGCACCCATCGCACATCATGTGCGCACACCCCCTCCGCCTCACCAATCGTCGGAACCCCAATGCC
710 AGCACCCATCGCACATCATGTGCGCACACCCCC-CCGCC-CCCCAATCGTCGGAACCCCAATGCT
* * * ** *
27981 GCCAGTCAGGTTTTTCGGTGATGCTCCGACAATGGTGCC
773 GCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
28020 CTGGGCAGAT
Statistics
Matches: 2393, Mismatches: 163, Indels: 119
0.89 0.06 0.04
Matches are distributed among these distances:
844 71 0.03
845 194 0.08
846 53 0.02
860 1 0.00
863 2 0.00
867 2 0.00
871 1 0.00
873 2 0.00
877 1 0.00
878 1 0.00
879 3 0.00
880 133 0.06
882 1 0.00
885 1 0.00
888 3 0.00
891 2 0.00
892 2 0.00
893 89 0.04
894 25 0.01
895 97 0.04
896 1 0.00
897 1 0.00
899 2 0.00
900 3 0.00
901 1 0.00
902 1 0.00
909 1 0.00
910 1 0.00
911 1 0.00
914 6 0.00
918 4 0.00
919 369 0.15
920 142 0.06
921 530 0.22
922 646 0.27
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (921 bp):
GGGAACGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCCCAACCGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGAGTCCCCC
CCTGCGTGCTGGCGATCCTACTACTGCAACCCTCGGTCAAGTCTAATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGATGGAGAGACAG
ATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
CCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
AGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
AAAATTTTTTCAGAAGGATGTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAAGTCAGCTCAAAACTCGAAGTGTACAGGATTTGGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
ATGGTGTGAGTTCTCAAGGCTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCA
GGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCAGCACCAACACATGCC
TGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCTGT
ATGCTTAGACG
Found at i:36162 original size:26 final size:26
Alignment explanation
Indices: 36133--36184 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
36123 ATCGGTTCGA
36133 TCTTACACTGGGAATGAACTATGTAT
1 TCTTACACTGGGAATGAACTATGTAT
* *
36159 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTACACTGGGAATGAACTATGTAT
36185 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTACACTGGGAATGAACTATGTAT
Found at i:37045 original size:26 final size:26
Alignment explanation
Indices: 37016--37094 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
37006 CTGGTCCGAT
*
37016 CTTACACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
37042 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
37068 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
37094 C
1 C
37095 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:37308 original size:908 final size:878
Alignment explanation
Indices: 34400--39218 Score: 5030
Period size: 897 Copynumber: 5.4 Consensus size: 878
34390 CCAATCTGAT
* * * * * ***
34400 CTTACACTGGGAATGAACTCCGTGTACCTAAGTCAACCCACAAAATGATTATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ** ** *
34465 TGGCCAAAAGGGCAGGATGCGCAAGCCGAGGATTGACCGGGTCCCCCCTACGTGCTGTCGATCAT
66 CGGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACGTGCTACCGATCCT
** * * * *
34530 GCTATCGC-AACTCTCAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 GCTGCCACAAAC-CTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
34594 TCGATGAAACGAGCGGGCGGGCGGGCACTACACCAGCCAGAGAGGCGGGATGCGCAAACTGTGGA
195 CCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * *
34659 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTAC
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* * *
34724 AGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAATCGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
** * * *
34789 TTTCTATTTTTCACGATTTTTTGAAACTTTTTACGGTTCGGGATTTTTTTTAAATTTTTTTAGAA
390 TTTCTATTTTTCACGA-TTTTTGAAAC-TTTTAATGTTCGAGA-TTTTTTAAAATTTTTTCAGAA
* * *
34854 GGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTT-TCTGGCATGCACAAAAATAT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAAT
* * * * *
34918 TTAGCTAAAAACTCA-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCATA
516 TCAGCTAAAAA-TTAGAAGTGTACA-AATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
34982 CACTTTAATGGCTATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
579 CACATT-ATGG-TA---G---CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
* * * * * **
35047 TCGAGGATTGATGAGGGATTGGAGGCCAATATAAGGGGCAAGTACCAGCACCCATCGCATAAAAT
635 TCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCTCA-CATTT
* *
35112 GTGCACACACACCC-CCTACCCCCAATCGCCGGAACCCCACTGCC-ACAGGTCAGG-T-T-C--T
698 GTGCACAC-C-CCCGCC--CCCCCAATCGTCGGAACCCCAATGCCGAC-GGTCAGGTTCTCCGAT
* * * *
35170 CCGGTGA---TGCTCC-GGTG-------AT--GG----TG--C---CCT-AGCCTAGCATGTGCA
758 CCGGTGATGGTGCCCCAGGTGAAAAAAAATACGGCACCAGCACATGCCTGAACCCAGCATGTGCA
* * * * * *
35212 CCCGTAA--CCCTCAAT-T--CG-GTCTGATCTTACATTGGGAATGAACTCCGTATT
823 -CCGCAACCCCCTCGATCTCACGAATCTGATCTTACACTGGGAATGAACTCCATATG
* * *
35263 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * ** **
35328 CAGCCAGAGGGGCAGGATGCGCAAGCTAGGGATCGATCGGGTCCCTCTCTTTGTGCTATGGATCC
66 CGGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCC-CCCTACGTGCTACCGATCC
** * * * **
35393 TGCTGCCGTAACCCTCAGT-TCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCACAAACCTCGGTCT-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
35457 ATCGATGAAACGAGC-AGACAGGCAGGCACTACGCCGGCCAGAAAGGCGGGATGCGCAAGTCGTG
194 ACCGACGAAACGAGCGAG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * *
35521 GATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTGCTTCCATGCCAATGCCATTTTT
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
* *
35586 ATGGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * *
35651 GTTTTTTATTTTTCACGATTTTTGAAACTTTTTACTGTTTGGGATTTTTTTAAAATTTTTTCAGA
388 GTTTTCTATTTTTCACGATTTTTGAAAC-TTTTAATGTTCGAGA-TTTTTTAAAATTTTTTCAGA
* * * *
35716 AGGATTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTAAAAAAAAAA
451 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-CACAAAAAAA
* * * *
35781 TTCAGCTAAAAAATCGAGGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGA
515 TTCAGCTAAAAATTAGAAGTGTACA-AATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
35845 GACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTTGTGAGTTCT
579 CAC----AT---TA-TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCT
*
35910 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTG
636 CGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACAT-TTG
* * * *
35975 TGCACACACCCCCCGCACCCCCCAAACGTCGGAACCCCAATGCCGTCAGTCTGGTTCTCCGACAA
699 TG--CACA-CCCCCGC-CCCCCCAATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCG---A
* * * * * * *
36040 TGCTCTGCTGATGGTGCCCCTGG-CAAAAAAAAT-TGTAGCACCAGCACATGCCCGAGCCCAGCT
757 T-C-C-GGTGATGGTGCCCCAGGTGAAAAAAAATACG--GCACCAGCACATGCCTGAACCCAGCA
* * * * ** *** *
36103 TATGCTCCTACAA--CCCTCGA-AT--CGGTTC-GATCTTACACTGGGAATGAACTATGTATT
817 TGTGCACC-GCAACCCCCTCGATCTCACGAATCTGATCTTACACTGGGAATGAACTCCATATG
* * **
36160 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAACCACGAAACGAGCCCGC-GGCTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAG
** * * * * *
36224 CCGGCCAAAGGGGTAGGATGTGCAAGTCGGGGATCGGTCGGGCCCTCCCCTGCGTGCTATCGTTC
65 CCGGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCC-CCCCTACGTGCTACCGATC
* * * * * *
36289 CAGCTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGCAATAAACTCCGTATGCCTAAGCCA
129 CTGCTGCCACAAACCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
36354 ACCGACGAAAAGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGG
194 ACCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
36419 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
*
36484 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCG
324 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * *
36549 TTATT-TATTTTTCATGATTTTCGAAACTTTTAATGGTTTGAGATTTTTCAAAATTTTTTCAGAA
389 TT-TTCTATTTTTCACGATTTTTGAAACTTTTAAT-GTTCGAGATTTTTTAAAATTTTTTCAGAA
* * * **
36613 TGAGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTGGTTTTGTTGGCATGCACAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
36678 CAGCTAAAAATTTGAAGTGTACCAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAATTAGAAGTGTA-CAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
36743 C-TT-T-GTAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
581 CATTATGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTG
36805 ATGAGGGATAGGGGGCCAATAT-AGGGTCCAAGTACCAGCACCCATCTCACATTTGTGTACACAC
645 ATGAGGGATA-GGGGCCAATATAAGGG-CCAAGTACCAGCACCCATCTCACATTTGTG--CACAC
* *
36869 CCCC-CCCCCCCAATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCTGGTGA
706 CCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGACGGTCAGGTTCT-C--CGAT-C-C-GGTGA
* * ** * ** **
36933 TGGTGCCCTAGGTGAAAACAAATGTGGCACCAGGACATGGGTGAACCCAAAATGTGCACCTGCAA
765 TGGTGCCCCAGGTGAAAAAAAATACGGCACCAGCACATGCCTGAACCCAGCATGTGCACC-GCAA
*
36998 CCCTCCGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
829 -CC-CC--C---T-CGATC-T-CAC---GAAT---CT--G-AT-CTTACACTGGGAATGAACTCC
37063 ATATG
874 ATATG
*
37068 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
37133 CGACCAAAGGGGTAGAATGCACAAGCCGGGGATCGGTTGGGTCCCCCCTACATGCTTACCGATCC
66 CGGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACGTGC-TACCGATCC
* *
37198 TGCTGCCACAAACCTCACG-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCACAAACCTC-GGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
37262 ACCCACGAAACGAGCGAGCGGGCGGGCACTACGCTGGCCAGAGAGGCGAGATGCGCAAGCCGTGG
194 ACCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
*
37327 ATCGAGAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
37392 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
324 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
*
37457 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTCGAGATTTTTTTAAAATTTTTTCAGAA
389 TTTTCTATTTTTCACGATTTTTGAAAC-TTTTAATGTTCGAGA-TTTTTTAAAATTTTTTCAGAA
* * ** * *
37522 GGTGTTTTTGCCCCAAACTTAATAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
37587 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
517 CAGCTAAAAATTAGAAGTGTACAA-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
37652 CTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTATC
581 C----AT---TA-TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTC
* **
37717 GAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA-TCATGC
637 GAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATTTGTGC
* *
37781 AC-CCCCCGCACCCTCCAATCGTCAGAACCCCAATGCC-ACTGGTCAGGTTCTCCGA--C---GA
702 ACACCCCCGC-CCCCCCAATCGTCGGAACCCCAATGCCGAC-GGTCAGGTTCTCCGATCCGGTGA
* * * * *
37839 TGGTGCCCGA-GTGAAAAAAAATACGGCAACAGCACATGCCCGAGA-CCAGCATGTGAACCCCCA
765 TGGTGCCCCAGGTGAAAAAAAATACGGCACCAGCACATGCCTGA-ACCCAGCATGTGCA-CCGCA
**
37902 A--CCCTCGATC-CA-G--TCTGATCTTACACTGGGAATGAACTCTGTATG
828 ACCCCCTCGATCTCACGAATCTGATCTTACACTGGGAATGAACTCCATATG
* * *
37947 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** ** **
38012 CGGCCAGAGGGGCT-GGATGCACAAG-CTGGCATAGGCCACGTCCCCCCCTGTGTGCTGTCGATC
66 CGGCCAAAGGGG-TAGGATGCACAAGCCGGGGATCGGTCGGGT-CCCCCCTACGTGCTACCGATC
** * *
38075 CTGCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCA
129 CTGCTGCCACAAACCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
38140 ACCAACGAAACGAGCCG-GCGGGCGGGCACTATGCCGACCAGAGAGGCGGGATGGGCAAGCAGTG
194 ACCGACGAAACGAG-CGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
* *
38204 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTT
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
38269 ATGGCTTGT-AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
38333 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGTTCG-GATTTTTTAAAATTTTTTCAGAAG
388 GTTTTCTATTTTTCACGATTTTTGAAACTTTTAATGTTCGAGATTTTTTAAAATTTTTTCAGAAG
38397 GAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
38461 AGGCTAAAAACTCAGAAGTGTACAGGATTTTGTGACCAATTG-AAAAAGTGTCGCCATTTCAGAC
518 A-GCTAAAAA-TTAGAAGTGTACA-AATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
38525 ACATTAATGGCTACTGACAAGGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGTTGTGAGTTC
580 ACATT-ATGG----T----A-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
* * * *
38589 TCAAGATTTCATGAGCGAAATTAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-TGCACA
635 TCGAGGTTTGATGAG-G-GA-T-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCT-CACA
* * * * ** *
38653 TCATGTGCGCACACCCCCTGCCCCCCCAATCATTGAAACCCCAATATCGCCGGTCAGG-T-T-C-
695 T--T-TGTGCACACCCCC-GCCCCCCCAATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCG
* * * * *
38714 -TCCGGTGATGGTGCCCCGGGCGAAAAAAAAATACGACACCAGCACATGCCTGAGCCCAGCGTGT
756 ATCCGGTGATGGTGCCCCAGGTG-AAAAAAAATACGGCACCAGCACATGCCTGAACCCAGCATGT
* * *
38778 GCACCCGTAA--CCCTCGA--TC-C-AATCTAATCTTACACTAGGAATGAACTCCATATG
820 GCA-CCGCAACCCCCTCGATCTCACGAATCTGATCTTACACTGGGAATGAACTCCATATG
* * * *
38832 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
38897 CGGCCAGAGGGGCAGGATGCACAAGCTAGGGATCGATCGTGTCCCCCCTACGTGCTACCGATGCT
66 CGGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACGTGCTACCGATCCT
* * * * * *
38962 ACTGCCGC-AACACTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 GCTGCCACAAAC-CTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
39026 CCGATG-AA--A-CGAGCGGGTAGGCACTACGACGGCCAGAAAGGCGGGACGCACAAGCCGTGGA
195 CCGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
39087 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* *
39152 GGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTAGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
39217 TT
390 TT
39219 GATGAGGGAT
Statistics
Matches: 3382, Mismatches: 400, Indels: 329
0.82 0.10 0.08
Matches are distributed among these distances:
861 1 0.00
862 69 0.02
863 255 0.08
864 324 0.10
865 5 0.00
866 2 0.00
867 5 0.00
868 1 0.00
869 2 0.00
870 6 0.00
871 2 0.00
872 1 0.00
873 53 0.02
874 88 0.03
875 47 0.01
876 20 0.01
877 90 0.03
878 238 0.07
879 116 0.03
880 7 0.00
881 112 0.03
882 151 0.04
883 54 0.02
884 19 0.01
885 283 0.08
886 78 0.02
887 1 0.00
888 3 0.00
891 3 0.00
892 5 0.00
893 1 0.00
894 1 0.00
895 67 0.02
896 87 0.03
897 414 0.12
898 6 0.00
899 1 0.00
900 2 0.00
901 2 0.00
903 1 0.00
905 37 0.01
906 15 0.00
907 13 0.00
908 392 0.12
909 143 0.04
910 1 0.00
914 4 0.00
915 5 0.00
916 6 0.00
917 36 0.01
918 3 0.00
919 35 0.01
920 67 0.02
921 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAAAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACGTGCTACCGATCCT
GCTGCCACAAACCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTAATGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAATTAGAAGTGTACAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTA
TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATTTGTGCACACCCCCGCCCCC
CCAATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTCCGATCCGGTGATGGTGCCCCAGGTGAA
AAAAAATACGGCACCAGCACATGCCTGAACCCAGCATGTGCACCGCAACCCCCTCGATCTCACGA
ATCTGATCTTACACTGGGAATGAACTCCATATG
Found at i:37950 original size:26 final size:26
Alignment explanation
Indices: 37921--37973 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
37911 CCAGTCTGAT
* *
37921 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
37947 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
37973 C
1 C
37974 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:38835 original size:26 final size:26
Alignment explanation
Indices: 38806--38858 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
38796 CCAATCTAAT
38806 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
38832 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
38858 C
1 C
38859 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:39472 original size:26 final size:26
Alignment explanation
Indices: 39436--39488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
39426 CTGGTCGGAT
39436 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
39462 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
39488 C
1 C
39489 CTAAGTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:40287 original size:26 final size:25
Alignment explanation
Indices: 40258--40309 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
40248 CCGATCCGAT
*
40258 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAAT-AACTCCGTATG
*
40284 CTTAGACTGGGAATAACTCCGTATG
1 CTTACACTGGGAATAACTCCGTATG
40309 C
1 C
40310 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
CTTACACTGGGAATAACTCCGTATG
Found at i:41180 original size:26 final size:26
Alignment explanation
Indices: 41144--41196 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
41134 TCGGTCTGAT
41144 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
41170 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
41196 C
1 C
41197 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:42393 original size:874 final size:870
Alignment explanation
Indices: 39501--42941 Score: 4341
Period size: 874 Copynumber: 3.9 Consensus size: 870
39491 AAGTCACCCT
* * * * * *
39501 CTACATGCTACTGATCCTGCTGCTGCAACCC-TCAGTCTGATCCAATCTTAGACTGGGAATGAAC
1 CTACATGCTACCGATCCTACTGCCGCAACCCTTGATTC-GGTCCAATCTTAGACTGGGAATGAAC
* * * * * *
39565 TCCATATGCCTAAGCCGACCGACGAAACGAGTGGGCGGGTGGGCACTACACTGGCCAGAGAGGCG
65 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
** * *
39630 GGATGCGCAAGCTTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTGTCA
130 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
39695 TGCCAATGCCATTTTTATGGCTTGCAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTTT
195 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * **
39760 CATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGGGATTTTT
260 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGA-TTTT
* * * * *
39825 TTTTAATTTTTTCAAAAGGAGTTTTGGCCCCACACTTGGTGGATGTGATCCTTGTGTTTTTGTTG
324 TTTAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
39890 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTGTGTGACCATTTGAAAAAAA
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* *
39955 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
* * *
40020 AGGGGGTATGAGTTCTTGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
40085 CCCATCGCACATCATGTGCACACAGCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGT
584 CCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCAATCGTTGGAACCCCAATGCCGCCGGT
* * * * * * * *
40150 CAGGTTC-CCAAATGATGCTTCGATGATGGTGCCTCGAGC-GAAAAAAATACGGCACCAGGACAT
649 CAGGTTCTCC-GACGATGCTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACAT
* * *
40213 GCCCGAGCCCAACATGTGCACCCACAACCCTCTTTCC-GATCCGATCTTACATTGGGAATGAACT
713 GCCCGAGCCCAGCATGTGCACCCACAACCCTCTGTCCAGATCCGATCTTACACTGGGAATGAACT
* *
40277 CCGTATGCTTAGACTGGGAATAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGACGC
778 CC----G--T--A-T--G------T-C----G---AAGTCAACCCATGAAATGAGCGTGCGGCGC
* * * *
40342 TCAGCTGACCAGAGGGGCAGGATGCACAAGCCGGGGATTGGTCGAGT-CCCCC
818 TCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCC
* * * * * * *
40394 CTGCATGTTATCGATCCTACTACCGTAACCCTTGGTTTGGTCCAATCTTAGACTGGGAATGAACT
1 CTACATGCTACCGATCCTACTGCCGCAACCCTTGATTCGGTCCAATCTTAGACTGGGAATGAACT
* *
40459 CCGTATGCCTGAGCCAACCGACAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
66 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* * *
40524 GATGTGCAAGCCGTGGATCAATAGGGTGGTAGTGTGGGTTTAGGCACA---TCATATTTTTG-CA
131 GATGCGCAAGCCGTGGATCGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATATTTCTGCCA
* * *
40585 TGCCATTTCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCATAAGCCTTCATGTGAAGTTT
195 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
40649 CATGGCAAGACGACTCGTTTTCTATTTTTCATGACTTTCGAAACTTTTTACGGTTC-GAGATTTT
260 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTT
* * *
40713 TTTAAACTTTTTTCAGAAGGAGTTTTGGCCTCAAACTTAGTA-ACGTGATCCTTGTA-TTTTGTT
324 TTTAAA-TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
40776 GGCATGCACAAAAAAATT-TGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
388 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAA
* *
40840 GTGT-CCCATTTCAGACAATTGAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
453 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
* *
40904 AAGGGGGTGTGAGTTCTCGAGATTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
518 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * ** * *
40969 ACTCATCGTACATCATGTACGCACACCGCCCGCCCCATCAATCGTTGGAACCCCAGTGCCGCCAG
583 ACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCAATCGTTGGAACCCCAATGCCGCCGG
** ** *
41034 TCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGAGCAAAAAAAAATGCGGCACTAGCACAT
648 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACAT
* * * *
41099 GCCTGAGCCCAG-ACGGTGCACCCGCAGCCCTCGATTCGGTCTGATCTTACACTGGGAATGAACT
713 GCCCGAGCCCAGCA-TGTGCACCCACA--AC-C----C--TCTG----T-C-C-----A-G-A-T
* * * * *
41163 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAATGATCGTGCGGGC
754 CCG-AT-CTTACACTGGGAATGAACTCCGTATGTCGAAGTCAACCCATGAAATGAGCGTGC-GGC
* * *
41228 GCTCAGCCGGCCAGA-GGGCAAGATGCGCAAGCCGGGGATCGGTCGGGTCCACCC
816 GCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCC
** * * * * * * * * * *
41282 CTGTATGCTGCCAATCTTGCTGCCACAACCCTTGGTTTGGTCTAATGTTAGAGTGGGAATGAACT
1 CTACATGCTACCGATCCTACTGCCGCAACCCTTGATTCGGTCCAATCTTAGACTGGGAATGAACT
* * * * * * **
41347 CCGTATGCCTAAGCTAACCGACGAAACGAACGGGCAGGCAGGCATTAAGATGGCCAGAGAGGCGG
66 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* *
41412 GATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCCAT
131 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
41477 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
196 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
*
41542 ATGGCAAGGCGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT
261 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT
*
41607 TAAATTTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG
326 TAAA-TTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
41672 CATGCACAAAAAAAATTCAGCTAAAAACTCGAAGCGTACAGGATTTTGTGACCATTTGAAAAAAG
390 CATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
*
41737 TGTCCCCATTTCAGACACTTTAATGGATACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
* * *
41802 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACTAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * **** *
41867 CCAATCGCACATCATGTGCGCACACCCCGCCACCCCCCCAGTCGTTAGAAGGTAAATGCCGCTGG
584 CCCATCGCACATCATGTGCACACACCCC-CCGCCCCCCCAATCGTTGGAACCCCAATGCCGCCGG
* * * * * * * *
41932 TCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCAAGCGAAAAAAAATGTGGGACCTGTAGAT
648 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACAT
* * *
41997 GCTCGGGACCAGCATGTGCACCCACAACCCTCTGTCCAG-TCCGATCTTACACTTGGG-ATGAAC
713 GCCCGAGCCCAGCATGTGCACCCACAACCCTCTGTCCAGATCCGATCTTACAC-TGGGAATGAAC
* * * *
42060 TCCGTATGTCGAAGTCAACCCACGAAATGAGGGTGCAGGCGCTCTGCCGGCCAGAGGGGCAGGTT
777 TCCGTATGTCGAAGTCAACCCATGAAATGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAGGAT
*
42125 GCACAAGCCGGGGATCGGTTGGGTCCCCCC
841 GCACAAGCCGGGGATCGGTCGGGTCCCCCC
* * *
42155 CTACATGCTACCGATCCTACTGCCGCAACCCTTGATCCAGTCTAATCTTAGACTGGGAATGAACT
1 CTACATGCTACCGATCCTACTGCCGCAACCCTTGATTCGGTCCAATCTTAGACTGGGAATGAACT
* * * * * *
42220 CCGTATGCCTATGCCAAACCGACGAAATGAGCGGGCGGGCGGGTACTATGCCGGCCAGATAGGCA
66 CCGTATGCCTAAGCC-AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCG
* * *
42285 AGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTGCCA
130 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
42350 TGCCAATGCCATTTTTATGGATTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
195 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * *
42415 CATGGCAAGACAACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTT
260 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTT
* * *
42480 TTATAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTG
325 TTA-AATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
42545 GTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
389 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* *
42610 TGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
454 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
42675 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
519 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * *
42740 CCCATCGCACATCATGTGCACACACCCTCTGCCCCCCCAATCGTTGGAACTCCAATGCCACCGGT
584 CCCATCGCACATCATGTGCACACACCCCCCGCCCCCCCAATCGTTGGAACCCCAATGCCGCCGGT
* * * * *
42805 CAGTTTCTCTGACGATGCTCC-AGCGATGGTGCCCCGGGCAAAAAATAAAATGTGGGACCAGCAC
649 CAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGAGC-AAAAA-AAAATGCGGCACCAGCAC
* * * *
42869 ATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCAGTCCAG-TCCAATCTTACACTGGGAATGAA
711 ATGCCCGAGCCCAGCATGTGCACCCACAACCCTCTGTCCAGATCCGATCTTACACTGGGAATGAA
42933 CTCCGTATG
776 CTCCGTATG
42942 CTTAGATTAG
Statistics
Matches: 2213, Mismatches: 279, Indels: 131
0.84 0.11 0.05
Matches are distributed among these distances:
871 1 0.00
872 118 0.05
873 319 0.14
874 367 0.17
875 2 0.00
877 1 0.00
878 1 0.00
883 1 0.00
884 1 0.00
885 203 0.09
886 88 0.04
887 91 0.04
888 178 0.08
889 109 0.05
890 48 0.02
891 51 0.02
892 118 0.05
893 149 0.07
894 34 0.02
895 13 0.01
896 49 0.02
897 141 0.06
898 94 0.04
899 2 0.00
900 1 0.00
901 2 0.00
903 1 0.00
904 1 0.00
906 1 0.00
908 2 0.00
909 1 0.00
910 4 0.00
911 2 0.00
912 19 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
CTACATGCTACCGATCCTACTGCCGCAACCCTTGATTCGGTCCAATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTT
TAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCACACACCCCCCGCCCCCCCAATCGTTGGAACCCCAATGCCGCCGGTCA
GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCACCCACAACCCTCTGTCCAGATCCGATCTTACACTGGGAATGAACTCCG
TATGTCGAAGTCAACCCATGAAATGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACA
AGCCGGGGATCGGTCGGGTCCCCCC
Done.