Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 10 of 120
Found at i:1071732 original size:26 final size:26
Alignment explanation
Indices: 1071701--1071753 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1071691 GTTGACTTAG
**
1071701 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCGCATTCCCAGTCTAA
*
1071727 GCATACGGAGCGCATTCCCAGTCTAA
1 GCATACAGAGCGCATTCCCAGTCTAA
1071753 G
1 G
1071754 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGCGCATTCCCAGTCTAA
Found at i:1074423 original size:26 final size:26
Alignment explanation
Indices: 1074387--1074439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1074377 GTTGACTTAG
1074387 GCATATAGAGTTCAATCCCAGTCTAA
1 GCATATAGAGTTCAATCCCAGTCTAA
* *
1074413 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCAATCCCAGTCTAA
1074439 G
1 G
1074440 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATAGAGTTCAATCCCAGTCTAA
Found at i:1074853 original size:892 final size:895
Alignment explanation
Indices: 1072609--1075083 Score: 3472
Period size: 907 Copynumber: 2.7 Consensus size: 895
1072599 GCATACGAAA
* * * * *
1072609 TTCATTCCCAGTCTCAGATCAGACCAGACCGAGGGTTACGATAGAACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* * * *
1072674 TGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACTAG
66 TGCTGGTGTCGCATTTTTCTTCGTC-GGGCACCATCGCTGGAG-A--ACC--TG-ACC-G----G
* * * * * **
1072739 CGGAATTGGGGTTCTGACGATCGGGGGGCCCGGGGGGGTGTGCACACATGATGTGCGGTGGGTGC
119 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGAAGGGTGC
*
1072804 TGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
183 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
1072869 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTT
248 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
1072934 TTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTAAATTTTTTTGTGCAAGGCAA
313 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
*
1072999 CAAAAATACAAGGATCACATCTACCATGTTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAA
378 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAA
*
1073064 ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
443 ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
1073129 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTA
508 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCTCGCA
* *
1073194 GAAATATGAAGATGTGCCTAAATCCACCTACCACCTTATCGATCCGTGGCTTGCGCATCCCGTCT
573 GAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
* * * *
1073259 CTCTAGCCGGCATACTGCCCGCCTGCCCGCCCGCCCTCCCGCTCGTTTCGTCAGTTGGCTTAGGC
638 CTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
* * * ** * * *
1073324 ATAGGGAGTTCATTCCCAGTCTAAGACTAGACCGAACTGAGGGTTGCGGCAGCATGATCGGCAGC
703 ATACGGAGTCCATTCCAAGTCTAAGACTAGACCGAACAAAGGGTTGCGGCACCAGGATCGCCAGC
* * *
1073389 ACGCACAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCGCCTCTGGCCAGCTGAGCGCCC
768 ACGCACAGGGGGACCCGACCGAGCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCC
* * *
1073454 GCAAGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCATTCCTAGTCTAAGTAGACGGAG
833 GCAAGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCAATCCCAGTCTAAGCAGACGGAG
* * * * * *
1073517 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGTTTGCGGCAGCACGTGCTGGGTTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* *
1073582 TGCTCGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGA
66 TGCTGGTGTCGCATTTTTCTTCGTC-GGGCACCA---TC---GC-T-G--G-AGAACCTGACCGG
* *
1073647 TGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATTTGC-AATGGGTGC
119 CGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAA-GGGTGC
*
1073711 TGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAA
183 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1073776 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
248 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
1073841 TTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTGTTTTGTGCATGCCAA
313 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
* * * *
1073906 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
378 CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAA
* * * * * *
1073971 ATCTCGAATCGTAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCGATGAAAC
443 ATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
1074036 TTCATGCGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAACAATGGTATTGGCTCGCA
508 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCTCGCA
* * * *
1074101 GAAATATGAAGATGTGCCTAAAGCCACCTATCACCCTATCGATCCACGGCTTGCGCAACCCGTCT
573 GAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCT
* * * *
1074166 CTCTGGCCGGCGTATTGCCCGCCCGCCTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGC
638 CTCTGGCCGGCGTACTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
1074231 ATACGGAGTCCATTCCAAGTCTAAGA-TCAGACCGAACAAAGGGTTGCGGC-CCAGGATCGCCAG
703 ATACGGAGTCCATTCCAAGTCTAAGACT-AGACCGAACAAAGGGTTGCGGCACCAGGATCGCCAG
* * * * ** * * *
1074294 CATGTAGAGGGGGACCTGGTCGAGCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
767 CACGCACAGGGGGACCCGACCGAGCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCC
* * * * *
1074359 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCAATCCCAGTCTAAGCATATGGAG
832 CGCAAGCTCATTTCGTGGGTTGACTTAGGCATAAAGAGTTCAATCCCAGTCTAAGCAGACGGAG
1074423 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
1 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
* *
1074488 TGCTGGTGTTGCATTTTTCTTCGTC-GG-AGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGT
66 TGCTGGTGTCGCATTTTTCTTCGTCGGGCACCATCGCTGGAGAACCTGACCGGCGGCATTGGGGT
** *
1074551 TCCGGTGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTAC-TGTGCC
131 TCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTG-GCC
* *
1074615 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAACAGCATTTGAG
195 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
1074680 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
260 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
1074745 CACAAAATCTTGTACAGTTCAAGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAGG
325 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAG
* * * ** * * * *
1074810 GATCACAACTACAAAGTTTAGGGTTAGATCGT-TTTTTGAAAAAATTTTAAAAAATCTCGAACCG
390 GATCACATCTACCAAGTTTGGGGCAAAAAC-TCCTTTCGAAAAAATTTTAAAAAATCTCGAACCG
* * *
1074874 CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGACGTCTTGCCATGAAACTTCACGTGAAG
454 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
1074939 GCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAG
519 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGC-TCGCAGAAATATGAA
* * *
1075003 GATGTGCCTAAATCCACCTACCACCCTATCAATCCATGGCTTGCACATCCCGTCTCTCTGGCCGT
583 GATGTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGG
*
1075068 CGTAGTGCCCGCCCGC
648 CGTACTGCCCGCCCGC
1075084 TCGTTTCGTC
Statistics
Matches: 1391, Mismatches: 159, Indels: 50
0.87 0.10 0.03
Matches are distributed among these distances:
891 2 0.00
892 495 0.36
893 5 0.00
895 1 0.00
896 1 0.00
897 2 0.00
900 2 0.00
903 3 0.00
904 2 0.00
906 202 0.15
907 547 0.39
908 112 0.08
911 2 0.00
912 1 0.00
913 3 0.00
914 3 0.00
916 4 0.00
918 2 0.00
919 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATG
TGCTGGTGTCGCATTTTTCTTCGTCGGGCACCATCGCTGGAGAACCTGACCGGCGGCATTGGGGT
TCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGG
ATCACATCTACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTA
AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCTCGCAGAAATATGAAGAT
GTGCCTAAATCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
ACTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTCCAT
TCCAAGTCTAAGACTAGACCGAACAAAGGGTTGCGGCACCAGGATCGCCAGCACGCACAGGGGGA
CCCGACCGAGCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCAAGCTCATTTC
GTGGGTTGACTTAGGCATAAAGAGTTCAATCCCAGTCTAAGCAGACGGAG
Found at i:1076088 original size:699 final size:699
Alignment explanation
Indices: 1074508--1076551 Score: 3035
Period size: 699 Copynumber: 2.9 Consensus size: 699
1074498 GCATTTTTCT
** *
1074508 TCGTCGGAGCATCG-CTGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCAG
1 TCGTCGGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
1074572 GGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTAC-TGTGCCCTTATATTGGCCCCCTATCCC
65 GGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCC
*
1074636 TCATCAAACCTCGAGAACTGACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAG
129 TCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
1074701 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCA
194 TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * ** * *
1074766 AGTTTTTAGCTGAATTTTTTTGTGCACGCCAACAAAAATACAGGGATCACAACTACAAAGTTTAG
259 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * * * * * **
1074831 GGTTAGATCGT-TTTTTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTG
324 GGCCAAAAC-TCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
* * *
1074895 AAAAATAGAAAACAAGACGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGA
388 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
1074960 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT-GAGGATGTGCCTAAATCCACCTAC
453 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAGA-GATGTGCCTAAACCCACCTAC
* * * *
1075024 CACCCTATCAATCCATGGCTTGCACATCCCGTCTCTCTGGCCGTCGTAGTG--C-CCGCCCGCTC
517 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCTC
* *
1075086 GTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGACTGGACCAGACTGAGGGT
582 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-T----C-G---GA-CGT
* * * ** *
1075151 TGTGGCAGCACATCCTAGGCTCGGGCATGTGCTGATGTCGCATTTTTCTTCGTCGGGGCACCA
637 TGCGACAGCACATCCTAGGCTCGGGCATGTGCTGATGCCAAATTTTTCTTCGCCGGGGCACCA
* * *
1075214 TCGTCGGAGCATCGTCAGAGAACCTGTCCGGCGGCATCGGGGTTCCGACGATCGGGGGGGCCGGG
1 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* *
1075279 GGATGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTC
66 GGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
1075344 ATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTA
131 ATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
1075409 GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
196 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
1075474 TTTTTAGCTGAATTTTTTTGTTCATGCCAAC-AAAATTCAAGGATCACGTCTACCAGGTTTGGGG
261 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
*
1075538 CCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAA
326 CCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
* * * *
1075603 AATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATAGTATGAATT
391 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* *
1075668 TACAAGCCATAAAAATGGCATTGGCACGCAAAAATATAGAGATGTGTCTAAACCCACCTACCACC
456 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAGAGATGTGCCTAAACCCACCTACCACC
*
1075733 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCTCGTT
521 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCCGCTCGTT
*
1075798 TCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGTTGCGACAGCACAT
585 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGTTGCGACAGCACAT
* * * *
1075863 GCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTTGCCGGGGCACCA
650 CCTAGGCTCGGGCATGTGCTGATGCCAAATTTTTCTTCGCCGGGGCACCA
* **
1075913 TCGTCAGAGCATCGTCGGAGAAGTTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGG
1 TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG
* * * *
1075977 GGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
65 GGGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1076042 CATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
130 CATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
1076107 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
195 AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
1076172 GTTTTTAGCTGAATGTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
260 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * *
1076237 GCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCGAACCGTGAAACGTTTCAAAAATCATGAA
325 GCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAA
* *
1076302 AAATAAAAAACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
390 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
* *
1076367 TTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCAC
455 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAGAGATGTGCCTAAACCCACCTACCAC
*
1076432 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCTGCCCGCCCGCCCAC
520 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG----TGCCCG-CCGCCCGC
* * * *
1076497 TCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCCTTCCCAGTCTAAGATTGGAC
580 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1076552 TGCACTGAGG
Statistics
Matches: 1212, Mismatches: 111, Indels: 32
0.89 0.08 0.02
Matches are distributed among these distances:
698 8 0.01
699 316 0.26
700 255 0.21
703 1 0.00
704 63 0.05
705 240 0.20
706 269 0.22
707 4 0.00
708 3 0.00
709 53 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (699 bp):
TCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAGAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGTTGCGACAGCACATC
CTAGGCTCGGGCATGTGCTGATGCCAAATTTTTCTTCGCCGGGGCACCA
Found at i:1076713 original size:26 final size:26
Alignment explanation
Indices: 1076677--1076729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1076667 GTTGACTTAG
*
1076677 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1076703 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1076729 G
1 G
1076730 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1078220 original size:901 final size:892
Alignment explanation
Indices: 1075855--1078344 Score: 3523
Period size: 887 Copynumber: 2.8 Consensus size: 892
1075845 GACGTTGCGA
* * * *
1075855 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAAATTTTTCTTTGCCGGGGCACCATCGTCAG
1 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTAAATTTTTCTTCGTC-GGGCACCATCGTCAG
* ** *
1075920 AGCATCGTCGGAGAAGTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTG
65 AGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGGTGTG
*
1075985 CACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
130 CACACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
1076050 CTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
1076115 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
1076180 CTGAATGTTTTTGTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
325 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
1076245 TCCTTCCGAAAAAATTTTGAAAAATCCCGAACCGTGAAACGTTTCAAAAATCATGAAAAATAAAA
390 TCCTTCCGAAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
1076310 AACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
454 AACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
1076375 CATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGA
519 CATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
1076440 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTACCTGCCCGCCCGCCCACTCGTTTTG
584 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-A---GCCCGCCCGCCCACTCGTTTCG
* * *
1076505 TCGGTTGGCTTAGGCATATGGAGTTCCTTCCCAGTCTAAGATTGGACTGCACTGAGGGTTGTGGC
645 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC-GGACTGAGGGTTGTGGC
** * * *** * *** *
1076570 AACAGGATCGACAGCACGTGGAGGGGTACCTGGCCGATTGTCGGCTATCGCATTTCGCCCCTCTG
709 AACAGGATCGACAGCACGCAGAGGGGTACCCGACCGATCCCCAGCTATCGCAACCCACCCCTCTG
* * *
1076635 GCCAGCTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTC
774 GCCAGCTGAGCACCCACACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
1076700 TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGCAGGTTGTGG
839 TAAGCATACGGAGTTCATTCCCACTCTAAGATCGAACCAGACCGCAGGTTGTGG
*
1076754 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGG-------GT---A
1 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTAAATTTTTCTTCGTCGGGCACCATCGTCAGA
*
1076809 CCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGG-CGGGGGGGTGTG
66 GCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT-AGGGGGGCCGGGGGGGTGTG
*
1076873 CACACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAAC
130 CACACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
1076938 ATCGAGAACCCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAATAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * *
1077003 AAGTGTCTGAAATGGGGCCGCCTTTTTCAAATGGCCACAAAAACTTGTACACTTCGAGTTTTTAG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
1077068 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGAT-ACGTCTACCAAGTTTGGGGTCAAAAC
325 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * * **
1077132 TCCTTTCAAAAAAATTTAAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAA
390 TCCTTCCGAAAAAATTT-TAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
1077197 AACAAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
454 AACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
1077262 CATAAAAATGGCATTGGCATGCAGAAATGTCAAGATGTGCCTAAACCCACCTACCACCCTATCGA
519 CATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
1077327 TCCACGACTTGCGTATCACGTCTCTCTAGTCGGCGTAGAGCCCGCCCGCCCACTCGTTTCGTCAG
584 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCCGCCCGCCCACTCGTTTCGTCGG
* * * *
1077392 TTGGCTTAGGCATACGAAGTTCAGTCCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGTAGCA
649 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGACTGAGGGTTGTGGCAACA
** *
1077457 GGATC-AGCAGCACGCAGAGAGGG-ACCCGATTGATCCCCAGCT-TGTGCAACCCACCCCTCTGG
713 GGATCGA-CAGCACGCAGAG-GGGTACCCGACCGATCCCCAGCTAT-CGCAACCCACCCCTCTGG
* * * *
1077519 CTGGCTGGCTGAGCGCCCATACGTTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCT
775 C---C-AGCTGAGCACCCACACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCC-
* *
1077584 A-T-TGAAGCATACGGAGTTCATTCCCACTCTAAGATTGGACCAGACCG-AGGGTTGTGG
835 AGTCT-AAGCATACGGAGTTCATTCCCACTCTAAGATCGAACCAGACCGCA-GGTTGTGG
* ** *
1077641 TAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCATCGAGGCACCATCGTCAG
1 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTAAATTTTTCTTCGTCG-GGCACCATCGTCAG
* * * ** *
1077706 AGCATCGCCGAAGAACCTAACCGGTGGCATTGGGGTTCCGATAATTGGGGGGCCGGGGGGGCGTG
65 AGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCC-GGGGGG-GTG
* **
1077771 TGCGCACATGATGTGCAATGGGTGTTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAA
128 TGCACACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
*
1077835 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1077900 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
1077965 AGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAA
323 AGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
**
1078030 AACTCCTTCCGAAAAAATTTTAAAACATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATA
387 AACTCCTTCCGAAAAAATTTTAAAA-ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * * *
1078095 GAAAATGAGTCGTCTTACCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACA
451 GAAAACGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * * * *
1078160 AGCCATAAAAATGGTATTGGCACGCAGAAAAATAAAGATGTACCTCAACCAACTTACCACCCTAT
516 AGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
1078225 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCAT-G-G--TGCCCGCCCGCTCATTTCGT
581 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCCGCCCGCCCACTCGTTTCGT
* *
1078286 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
646 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CGGACTGAGGGTT
1078345 ACGGCAGCAC
Statistics
Matches: 1410, Mismatches: 151, Indels: 62
0.87 0.09 0.04
Matches are distributed among these distances:
882 2 0.00
883 120 0.09
884 4 0.00
886 4 0.00
887 381 0.27
888 273 0.19
889 6 0.00
891 2 0.00
895 2 0.00
897 76 0.05
898 43 0.03
899 195 0.14
900 81 0.06
901 221 0.16
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCTAAATTTTTCTTCGTCGGGCACCATCGTCAGA
GCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATAGGGGGGCCGGGGGGGTGTGC
ACACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGAGCCCGCCCGCCCACTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACGGACTGAGGGTTGTGGCAACAGGA
TCGACAGCACGCAGAGGGGTACCCGACCGATCCCCAGCTATCGCAACCCACCCCTCTGGCCAGCT
GAGCACCCACACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGGAGTTCATTCCCACTCTAAGATCGAACCAGACCGCAGGTTGTGG
Found at i:1079192 original size:26 final size:26
Alignment explanation
Indices: 1079162--1079214 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1079152 GTTGACTTAG
1079162 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1079188 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1079214 G
1 G
1079215 ATCACACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1080092 original size:26 final size:26
Alignment explanation
Indices: 1080062--1080114 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1080052 GTTGACTTAG
1080062 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1080088 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1080114 G
1 G
1080115 ATCACACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1080201 original size:900 final size:900
Alignment explanation
Indices: 1078298--1080852 Score: 4557
Period size: 900 Copynumber: 2.9 Consensus size: 900
1078288 GTTGGCTTAG
* ** * * * *
1078298 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCACACCGGATCAAGGGTTACGACAGCACATGCTGGG
** * ** *
1078363 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGTCG-GG-------G-C--ACCATCGCCGGAGA
66 CTCAAGCATGTGCTGGTGCCGCATTTTTCCTCGTCGAGGCACCATCGCCAGAGCATCGCCGGAGA
* * *
1078417 ACCTGACTGGCGGCATTGGGGTTCCTACGATCGAGGGGGTTGGGGGCGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGA-GGGGTCGGGGGGGGTGTGCGCACATGATGT
* ** ** * *
1078482 GCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACCCG
195 GCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCA
* *
1078547 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
260 CACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAA
1078612 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
1078677 TTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 TTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
1078742 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCT
1078807 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
1078872 ATTGGCATGCAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATGCAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGC
1078937 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATAGGTTGGCTTA
650 GCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATAGGTTGGCTTA
1079002 GGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTATGGCAGTAGGATTGGC
715 GGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTATGGCAGTAGGATTGGC
1079067 AGCAGGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCA
780 AGCAGGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCA
1079132 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1079188 GCATATGGAGTTCATTCCCAGTCTAAGATCACACCGGATCAAGGGTTACGACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCACACCGGATCAAGGGTTACGACAGCACATGCTGGG
*
1079253 CTCATGCATGTGCTGGTGCCGCATTTTTCCTCGTCGAGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCAAGCATGTGCTGGTGCCGCATTTTTCCTCGTCGAGGCACCATCGCCAGAGCATCGCCGGAGA
1079318 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCGGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCGGGGGGGGTGTGCGCACATGATGTG
1079383 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAC
1079448 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
261 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
1079513 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTT
1079578 TGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
1079643 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTT
1079708 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1079773 TTGGCATGCAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCATGCAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCG
1079838 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATAGGTTGGCTTAG
651 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATAGGTTGGCTTAG
1079903 GCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTATGGCAGTAGGATTGGCA
716 GCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTATGGCAGTAGGATTGGCA
1079968 GCAGGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCAC
781 GCAGGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCAC
1080033 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1080088 GCATATGGAGTTCATTCCCAGTGTAAGATCACACCGGATCAAGGGTTACGACAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCACACCGGATCAAGGGTTACGACAGCACATGCTGGG
*
1080153 CTCAAGCATGTGCTGGTGCCGCATTTTTCCTCGCCGAGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCAAGCATGTGCTGGTGCCGCATTTTTCCTCGTCGAGGCACCATCGCCAGAGCATCGCCGGAGA
*
1080218 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCGGGGGGGGTGTGGGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCGGGGGGGGTGTGCGCACATGATGTG
1080283 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAC
1080348 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
261 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
* *
1080413 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTT
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTT
*
1080478 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
1080543 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTT
1080608 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
1080673 TTGGCATGCAGAAATATGAAGATGTGCCTCAACCAACTTGCCACCCTATCGATCCACGGCTTGCG
586 TTGGCATGCAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** * *
1080738 CATCCCGTCTCTCTGGCCGACATAGTG--C-CC-GCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
651 CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATAGGTTGGCTTAG
* * **
1080799 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTATGGCAG
716 GCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGA-ACCGAGGGTTATGGCAG
1080853 CACATGCTGG
Statistics
Matches: 1606, Mismatches: 47, Indels: 18
0.96 0.03 0.01
Matches are distributed among these distances:
890 89 0.06
891 2 0.00
895 1 0.00
896 75 0.05
897 2 0.00
898 2 0.00
899 1 0.00
900 1388 0.86
901 46 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCACACCGGATCAAGGGTTACGACAGCACATGCTGGG
CTCAAGCATGTGCTGGTGCCGCATTTTTCCTCGTCGAGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCGGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAC
ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTT
TGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATAGGTTGGCTTAG
GCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTATGGCAGTAGGATTGGCA
GCAGGTAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCAC
CCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1081323 original size:712 final size:713
Alignment explanation
Indices: 1080088--1081568 Score: 2340
Period size: 712 Copynumber: 2.1 Consensus size: 713
1080078 CCCAGTCTAA
* * * * * * *
1080088 GCATATGGAGTTCATTCCCAGTGTAAGATCACACCGGATCAAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTATGGCAGCACATGCTGGG
*
1080153 CTCAAGCATGTGCTGGTGCCGCATTTTTCCTCGCCGAGGCACCATCGCCAGAGCATCGCCGGAGA
65 CTCAAGCATGTGCTGGTGCCACATTTTTCCTCGCCGAGGCACCATCGCCAGAGCATCGCCGGAGA
* ** *
1080218 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCGGGGGGGGTGTGGGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCAGGGGCAGTGTGCGCACATGATGTG
* *
1080283 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACCCAC
* *
1080348 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATCTGAAAT
*
1080413 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
* * *
1080478 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCAAAAAA
** *
1080543 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAGAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1080608 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1080673 TTGGCATGCAGAAATATGAAGATGTGCCTCAACCAACTTGCCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAAAAATATGAAGATGTGCCTCAACCAACCTACCACCCTATCGATCCACGGCTTGCG
* *
1080738 CATCCCGTCTCTCTGGCCGACATAGTG-C-CC-GCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
650 CATCCCGTCTCTCTGGCCGACATAGTGCCGCCTGCCCGCCCGCTCATTTCATAGGTTGGCTTAG
1080799 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GACCGAGGGTTATGGCAGCACATGCTGGG
** * * * * *
1080864 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
65 CTCAAGCATGTGCTGGTGCCACATTTTTCCTCGCCGAGGCACCATCGCCAGAGCATCGCCGGAGA
*
1080929 ACCTGACCGGCGGCATTGGGGTTCCTGCGATCGAGGGGGTCAGGGGCAGTGTGCGCACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGA-GGGGTCAGGGGCAGTGTGCGCACATGATGT
* ** * *
1080994 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCAAGAACCCA
194 GCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACCCA
* *
1081059 CACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATCTGAAA
*
1081124 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
1081189 TTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGACAAAAATCCTTCCAAAAA
389 TTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCAAAAA
* * *
1081254 AATTTTAAAAAAATCCTGAACCA-AAAACGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
454 AATTTT-AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1081318 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1081383 CATTGGCATGCAAAAATATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAAAAATATGAAGATGTGCCTCAACCAACCTACCACCCTATCGATCCACGGCTTG
* * * **
1081448 CGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATAGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGACATAGTG-CCGCCTGCCCGCCCGCTCATTTCATAGGTTGGCTT
1081513 AG
712 AG
* * **
1081515 GCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGAACCGAGGGTTATGGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG-ACCGAGGGTTATGGCAG
1081569 TAGGATTGGC
Statistics
Matches: 702, Mismatches: 61, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
711 147 0.21
712 461 0.66
713 15 0.02
714 1 0.00
715 3 0.00
716 75 0.11
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (713 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACCGAGGGTTATGGCAGCACATGCTGGGC
TCAAGCATGTGCTGGTGCCACATTTTTCCTCGCCGAGGCACCATCGCCAGAGCATCGCCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCTACGATCGAGGGGTCAGGGGCAGTGTGCGCACATGATGTGC
GATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCAAGAACCCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAAATCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAAAAATATGAAGATGTGCCTCAACCAACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACATAGTGCCGCCTGCCCGCCCGCTCATTTCATAGGTTGGCTTAG
Found at i:1081704 original size:26 final size:26
Alignment explanation
Indices: 1081674--1081726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1081664 GTTGACTTAG
1081674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1081700 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1081726 G
1 G
1081727 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1082266 original size:26 final size:26
Alignment explanation
Indices: 1082236--1082285 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1082226 GACTTAGGCG
1082236 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCTAGTCTAAGCA
1082262 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCTAGTCTAAG
1082286 ATTAGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGTTCATTCCTAGTCTAAGCA
Found at i:1083171 original size:25 final size:25
Alignment explanation
Indices: 1083135--1083182 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
1083125 GTTCACTTAG
1083135 GCATACGAAGTTCATTCCCAGTCAA
1 GCATACGAAGTTCATTCCCAGTCAA
*
1083160 GCATACGGAGTTCATTCCCAGTC
1 GCATACGAAGTTCATTCCCAGTC
1083183 TAAGATCGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCCAGTCAA
Found at i:1083867 original size:902 final size:899
Alignment explanation
Indices: 1082056--1093455 Score: 13703
Period size: 902 Copynumber: 12.9 Consensus size: 899
1082046 TCACAAAATC
* * * * * *
1082056 TTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTGCCAGTCTAAGAT-TGAACCGGACAGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGT
* * * * * *
1082120 TGCAGTAGCAGGATCAGCAGCACGCATAGGGGGGCCTGGCCGATCCCCGGCTTGCGCATCCCACC
65 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
* * * * * * * * *
1082185 CCTCTGGCCGACTGAACACTCGTACACTCGTTTCATGAGTTGACTTAGGCGTACGGAGTTCATTC
130 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * ** * * * *
1082250 CTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAGATCGAGGGTTACGGCACCA
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * *
1082315 CATGCAGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGAAGCAT
260 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
** *
1082380 CG-TCAAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGTGTGCGC
325 CGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGC
*
1082444 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTC
388 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
1082509 GAGAACTCACA-CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAG
453 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * * *
1082573 TGTCTGAAATGGGGACACTTTTTTTAATTGGTCACAAATTCTTGGACACTTCGAGTTTTTAGCTG
518 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * ** * * *
1082638 AATTTTTTTCTGCATGCCAACAAAAATAAAAGGATCACGTCTATGAAGTTTGGGGCTAAAACGCG
583 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** * *
1082703 TTCCGAAAAAATTTTAAAAAATCATGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
648 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* *
1082768 GAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
713 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * *
1082833 AAAAATGGCATTGGCACATAGAAATATAAAGATGTGCCTAAACCCACCTAACACCCTATCGATCC
778 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * *
1082898 ACGGCATGTGCATCCTGTCTCTCTGGTCGGCATAGTGCCCGCCCCTCCGCCCGCGCGCTCA
843 ACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCG--C-C-CGCTCG
* * *
1082959 TTTCGTCGGTTGGCTTAGTCTTACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-TCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * *
1083023 GTGGAAGCAGGATTGGCAGCACGCAGAAGGGGACCCAGCCGATCCCCGGCTTGCGCATCCCACCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * *
1083088 CTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGAAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
1083153 CAGTC-AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
** * * * * *
1083217 ATGCTGGGCTTAGGCATGTGTTGCTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* ** * * **
1083282 GCTGGAGAACCTGACCGGCAGTTTTGGGGTTCCGGCGATCGGGTGGGCTGGGGGGGCATGCGCAC
326 GCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCAC
* * * * * *
1083347 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCACCATATCCTTGATCAAACCTAGA
390 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
1083412 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAATG
455 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
1083477 TCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAA
520 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
1083542 TTTTTTTGTGAATGCCAACAAAAATACAAGGATCACATCTACCAAGTCTGGGGCCAAAACTCCTT
585 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * ** * *
1083607 CCGAAAAAATTTTGAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGA
650 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
1083672 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
715 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
1083737 AAATGGCATTGGCATGCAGAAATATGATGGTGTGCCTAAAACCACCTACCACCCTATCGATCCAC
780 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
1083802 GACTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCTGTCCGCCCGCTCT
845 GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CC--TCCGCCCGCTCG
* * * * * * *
1083861 TTTCGTCGGTCGGCTTAGGCATAGGGAGTCCATTCCCAGTCTAAGATCGGACCAAACTGAGGATT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* ** * * * * **
1083926 GCAGTAGCCA-GATCGATAGCATGCAGAGAGGGACCCGGTCGATACCCGGCTTGCATATCCCGCC
66 GCGGTAG-CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
* * * **
1083990 CTTTTGGTCGGCTGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
130 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
1084055 CCAGTATAAGCATACCGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCA
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
*
1084120 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCAT
260 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* *
1084185 CG-TCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT--------CGGGGGGTTGTGCGCA
325 CGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCA
* * * *
1084241 CATTATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTCA
389 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
1084306 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
454 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
1084371 GTCTGATATGGGGACACTTATTTCAAATGGTCACAAATTCTTGTACACTTTGAGTTTTTAGCTGA
519 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
1084436 ATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGCCTACAAAGTTTGGGGCCAAAACTCCT
584 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
** * * *
1084501 TTTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATTGAAAACG
649 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
1084566 AGTAGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATA
714 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
1084631 AAAATGGCATTGGCATGCAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATGGATCGA
779 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
1084696 CGGCTTGCGCATCCTGTCTTTCTGGCCGGCCTAGTGCCCG---CT-----CGCTCA
844 CGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
** * * * *
1084744 TTTTATCAGTTGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCGGACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * * ** *
1084809 GCAGCAGCAGTATCAGTAGCACGCAGACGGGGACATGGCCGATCCCCGGCTTGCGCATCCCTCCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * * *** *
1084874 CTCTGGCCGACTGAGCGCCCGCACACTCGTTTCATTTTTTTACTTAGGCATACGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * ** * * * *
1084939 CAGTCGAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACGGAGGGTTCCGACAGCAT
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
**
1085004 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAAGGCACCA---TC---G---C
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * * * * ** * *
1085060 -C-GGAGAACTTGACCGGCGGCATTGGGGTTCTGAAGACCGGGGGGGTCGCAGGGCTGTGTGCAC
326 GCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCAC
* * *
1085123 ATGATGTGTGATGGGTGCCGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
390 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
1085188 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTG
455 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
1085253 TTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
520 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
1085318 TTGTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
585 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* **
1085383 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAATGTTTCAAAAATTGTGAAAAATAGAAAACGA
650 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
*
1085448 GTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
715 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
1085513 AAATGGCATTGGCATGCAGAAATATGAAGAAGTGCCTAAACCCTCCTACCACCCTATCGATCCAC
780 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
1085578 GGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCG---CT-CGCCCCCTCA
845 GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
* * *
1085629 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCAGACCGGATCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * * * * * * *
1085694 ACGATAGTAGGATCGACATCATGCAGAGGGGGACCGGGGCGATCCTCGACTTGCGCATCACGCCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* *
1085759 CTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
1085807 C--T-T-A-CA-A---AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * * * * *
1085863 ATGCTGGGCTCGGGCGTGTGTTGGAGGCACATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * * * *
1085928 -ATCGGAGAACCTTACCGGCGGCATTGGGGTTCCGACGATCAGGGTGGTCGGGGGGGGTGTGTGC
326 GCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGG-GGGCCGGGGGGGTGTGCGC
* *
1085992 ACATAATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
388 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
1086057 GAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAG
453 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
1086122 TGTCTGAAATGAGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
518 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * * * *
1086187 AATTTTTTTGTGCATGCCAA-AAATATTGCAAGGATCAGGTGTACCAAGTTTGGCGCAAAAACTC
583 AATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
**
1086251 C-TCC-----------------T---GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
647 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * **** * * *
1086295 CGAGTCATCTT-CTATTTTTCTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCTA
712 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
1086359 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATC
777 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * * *
1086424 CATGGCTTGCGCATCCCATCTCTCTCGTCGGCGTAGTGCCTG--CAT--GCCCGTTTG
842 CACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
* *
1086478 TTTCGTCGGTTGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * ** * * *
1086542 GTGGCAGCAGGATCGACAACACATAGAGGGGGACCTGGTCGATCCCCGGTTTGCGCATCCCGCCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
1086607 CTTTGGCCGGCTGAACGCCTGCACGCTCGTTT--T--GTGGA--T-----TA---A---C-TT--
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
** *
1086652 -AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * *
1086711 AAGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * * * * * * *
1086776 GCCGGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGCGTC-GGGGGGTGCGCACACA
326 GCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACA
* *
1086840 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAG
391 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
1086905 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATTAAAGT-A
456 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
1086969 C--AAA-GGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
521 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * **
1087031 TTTTTTTTGTATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGTTCCAAAACTCCTTC
586 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * **
1087096 CAAAAAAATTTTAAAAAATCCCAAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAACGA
651 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG-AAAACGA
* * * *
1087161 GTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGTCATAA
715 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
1087226 AAATGGCATTGGCACGCAGAAATTTGAAGATGTGCCTAGACCCACCTACCACCCTAGCGATCCAC
780 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
1087291 GACTTGCGCATCCCGTCTCTCTAGCCGCCGTAGTGCCCGCCCGCCCGCCCCCCGCCCGCTCG
845 GACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCG--C-CCCTCCGCCCGCTCG
* * * **
1087353 TTTCTTCGGTTGGCCTAGGCATACGGAGTTCATTCCCAGCCTAAGATTGGACCAGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * * ** * * *
1087418 GCGGCAGTAGGATCGACAGCACACAGAGGGGGACCAGATCGGTCCCCAGCTTGGGCATCCCGCCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * * ** *
1087483 CTCTGGCCGACTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGTGTACAGAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
1087548 CAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * * *
1087613 ATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCCTCGGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* *
1087678 G-TCGGAGAACCTGACCGGCGGCATTAGGGTTCCGACGATCGGTGGGGCCGGCGGGGTGTGCGCA
326 GCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCA
* * *
1087742 CATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAATCCTCG
389 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
1087807 AGAACTCACAGCCCCTTGAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
454 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
1087872 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
519 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
1087937 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGG-TAAAACTCC
584 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCC
* *
1088001 TTCC-AAAAAAGTTTTAAAAAATCCCGAACCGTAAGAAGTTTCGAAAATCATGAAAAATAGAAAA
648 TTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
1088065 CGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
712 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
1088130 TAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATC
777 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
1088195 CAC-AGCTTGCGCATCCTGTCTCTCTGGTCGACATAGTGCCCTCCTGCCCGC-CCGCCCGCCCGT
842 CACGA-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCC-CTCCGCCCG--C--
1088258 TCG
897 TCG
* *
1088261 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGTGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGT
* * * * * ** * * * *
1088325 TGCTGCAGCCGAATCGGTAGCACATAGAAGGGGACCCGACCGATCACCGGCTTGCGCATCCCACC
65 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
* * * *
1088390 CCTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGAAGTTCATTC
130 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
1088455 CCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCA
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * ** ** * *
1088520 CATGCTGTGCTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGAAACCATCGTCAGAGCAC
260 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * * * * * *
1088585 CGCCGGGGAACCTAACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCG
325 CGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCA
* * * * *
1088650 CATGATGTACGATTGGTGCTGGCACTTGGTCCTTATATTGGCCCCCTATCCTTCATCAAACCTCG
389 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
1088715 AGAACTCACAGCCCCTTAAAGAGCATCTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
454 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
** *
1088780 GTCTCTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGA
519 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
1088845 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
584 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
1088910 TCCGAAAAAA--TT------T---------T-----G-----AAAATCATGAAAAATAGAAAACG
649 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * * **
1088948 AGTCGTCTTGCCATTAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGAAATA
714 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
1089013 AAAATGGGATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
779 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * *
1089078 C-AGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT---AACCAC-CCGTCCGCTCA
844 CGA-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
* * * * * * *
1089130 TTTCGTCGGTTGGCTTAGGCTTGCGGAGTTCATTCCCAGTCCAAGATCGGA-CTGAGCGGAAGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGGGT
** ** * * * * *
1089194 TGCGGTAGCAGGATCAACAATATGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACC
65 TGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
* * *
1089259 CCTCTGGCCGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTC
130 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
1089324 CCAGTCTAAGCATACGGAGTTCATTCCAAGTATAAGATCGGACCGGACCGAGGGTTACGGCAGTA
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * ** **
1089389 CATGCTGGGCTCGGGTATCTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCACCGGAGCAT
260 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * * * * *
1089454 CACCGAAGAACCTGACCGGTGGCATTGAGGTTCCGGCGATCGGGGGG-CGGGGGGGTGTGCGCAC
325 CGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCAC
* *
1089518 GTGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
390 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
** *
1089583 GAACAAACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
455 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* ** *
1089648 TTTGAAATGGGGACACTTTTTTCAAATAATCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAA
520 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
1089713 TTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAAATCTTT
585 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * * * *
1089778 TTGAAAAAATTTTAAAAAATCTCAAACC--ACAAAAGTTTCAAAAATCGTGAAAAATAGAAAACA
650 CCGAAAAAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
1089841 AGTCGTCCTGCCAT-AAGACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATCTACAAGCCAT
714 AGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
1089905 AAAAATGGCATTGGCATGTAGAAATATGAAGATATTCCTAAACCCACCTACCACCCTATCGAT-C
778 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * ** *
1089969 -C-A-----G--T--C-TC-C-CTGGCCGACATAGTGCCCGCCTGTCCGCCCGTTCG
843 ACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
* * * * *
1090012 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGTGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * ** * **
1090077 GCGGTAGCCGGATCGGTAGCACGTAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCTAGCCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * *
1090142 CTCAGGCCGGCTGAGCGCCCGCACGCTCGTTTGGTGGGTTGATTTAGGCATACGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1090207 CAGTCTAAG-AT-C-G-G---A-T--C-G-----GAT----------CGAGGGTTGCGGCAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* *
1090246 ATGCTGGGCTCAGGCATGTG-TCGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
261 ATGCTGGGCTCGGGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * * *
1090310 CGCTGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGGTCAGGGGGG-CTGGGGGGTGTGCGCA
325 CGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCA
*
1090374 CATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
389 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* *
1090439 AGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT
454 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * *
1090504 GTCTAAAATAGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGA
519 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
1090569 ATTGTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCCT
584 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
1090634 TCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAATG
649 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
* * *
1090699 AGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCCTA
714 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * *
1090764 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCGA
779 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
1090829 CGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTG--C-CCAC-CCGCCCGCTCG
844 CGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
** * *
1090881 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCAAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * ** *
1090946 ACGATAGCAGGATCGGTAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* ** * * * *
1091011 CTCTAGCTAGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCTTTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
1091076 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTTGCAGCAGCAC
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
* * **
1091141 ATGCTGGCCTCGTGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
* * ** *
1091206 GCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTACGCAC
326 GCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCAC
*
1091271 ATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
390 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * *
1091336 GAACTCACAGCCTCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTG
455 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1091401 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA
520 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * **
1091466 TTGTTCTGTGCATGGCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCC
585 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
1091531 CCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTC-GAAATCATGAAACATA-AAAACG
650 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACG
* * *
1091594 AGTCGTCTTCCCATGAAACTTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCAT
714 AGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
1091659 AAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCATATCGATC
778 -AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * ** *
1091724 TACGGCTTGCGCAACTCGTCTCTTTGGACAACGTAGTGCTCG---C-CCGCCCGCTCG
842 CACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
* * * * *
1091778 TTTCATCGGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * ** * * * * * *
1091843 ACGGTAGAAGGATCGATAGCACACCGAGTGGGACCCGGCCGATCCCCGACTTGCTCATCCTGCCC
66 GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * *
1091908 CTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCC
131 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
1091973 CAGTCTAAGCAAATGGAGTTCATTCCCAGTCTAAAAT-GAGACCGGACCGAGGGTTGTGGCAGCA
196 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGGCAGCA
*** ** *
1092037 CATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCACCCGAGCAT
260 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* **
1092102 C-ATCGGAGAACCTGATTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGC
325 CGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGC
* *
1092165 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCTTCATCAAACCTC
388 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
1092230 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
453 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
1092295 TG-CGTGAAATAGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCT
518 TGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * *
1092359 GAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGAGCCAAAATTA
582 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
1092424 CTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATGTTTCGAAAATCATGAAAAATAGAAAA
647 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* ** *
1092489 CGAGTCATCTTGCCATGAAACTTCATATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAA
712 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * ** *
1092554 TAAAAATGGCATCGACATGCAGAAATATGTTGATGTGCCTAAACCCACCTACCAACCTATCGATC
777 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * ** * *
1092619 CACGACGTGTGCATCCCGTCTCTCTAACCGGCGTAGTGCCTTCCTGACCGC-CCACCCGCTCG
842 CACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-G-CCCCTCCGCCCGCTCG
* * * * ** **
1092681 ATTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * * ****
1092746 GCAGTAGTAGGATCGGCAGCA-GATAAAGGGGGACCCAATTGATCCCCGGCTTGCGCATCCCGCC
66 GCGGTAGCAGGATCGGCAGCACG-CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCC
*
1092810 CCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
130 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
1092875 CCAGTCTAAGCATACGGAGTTC-TTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCA
195 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
* * * *
1092939 CATTCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATC-ACTGGAGCA
260 CATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCA
* * * ** * *
1093003 TC-ATCGGAGAACCTGACCGGCGGCATTGCGGTTCTGGTGATCGAGGGGGCC-AGGGGGTTTGCG
324 TCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCG
* *
1093066 CACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTCGCCCCCTATCCCTCATCAAACTT
387 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
1093130 CGAGAACTCACACCCCCATATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
452 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
1093195 GTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
517 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * *
1093260 GAATTTTTTTATGCATGCCAAGAAAAATACAATGATCACGTCTACCAAGTTTGGAGCCAAAATTA
582 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
1093325 CTTCC-AAAAAATTTTAAAAAATCCCGAACC--ACAAAAGTTTCAAAAATCATGAAAAATAGAAA
647 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAGAAA
* * * *
1093387 ACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTATGGGACCCTTGTATGAATATACAAGCC
711 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
1093452 -TAAA
776 ATAAA
1093456 CCCACCTACC
Statistics
Matches: 9074, Mismatches: 1176, Indels: 499
0.84 0.11 0.05
Matches are distributed among these distances:
841 103 0.01
842 9 0.00
843 3 0.00
844 7 0.00
845 134 0.01
846 2 0.00
847 3 0.00
848 258 0.03
849 158 0.02
850 45 0.00
853 1 0.00
855 1 0.00
856 103 0.01
857 280 0.03
858 142 0.02
859 88 0.01
860 1 0.00
862 35 0.00
863 16 0.00
864 134 0.01
865 1 0.00
866 4 0.00
867 258 0.03
868 15 0.00
869 501 0.06
870 46 0.01
871 256 0.03
872 33 0.00
873 23 0.00
874 4 0.00
875 21 0.00
876 133 0.01
877 3 0.00
878 15 0.00
879 5 0.00
880 10 0.00
881 650 0.07
882 181 0.02
883 265 0.03
884 1 0.00
885 148 0.02
886 1 0.00
887 2 0.00
888 2 0.00
890 2 0.00
891 3 0.00
892 3 0.00
893 133 0.01
894 2 0.00
895 682 0.08
896 684 0.08
897 457 0.05
898 6 0.00
899 87 0.01
900 29 0.00
901 448 0.05
902 866 0.10
903 361 0.04
904 288 0.03
905 4 0.00
906 10 0.00
907 169 0.02
908 729 0.08
909 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
GCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC
GCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
ACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCTCCGCCCGCTCG
Found at i:1084069 original size:26 final size:26
Alignment explanation
Indices: 1084038--1084090 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1084028 GTTGACTTAG
*
1084038 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACCGAGTTCATTCCCAGTATAA
*
1084064 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTATAA
1084090 G
1 G
1084091 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTATAA
Found at i:1088475 original size:26 final size:26
Alignment explanation
Indices: 1088438--1088490 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1088428 GTTTACTTAG
1088438 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
1088464 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1088490 G
1 G
1088491 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1088727 original size:908 final size:896
Alignment explanation
Indices: 1086654--1093455 Score: 8668
Period size: 908 Copynumber: 7.6 Consensus size: 896
1086644 ATTAACTTAG
** * *
1086654 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1086719 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * * * * * *
1086784 ACCTGACCGACGACATTAGGGTTCCGACGATC-GGGGCGTCGGGGGGTGCGCACACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1086848 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
1086913 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGGCATTAAAGT-AC--AAA-G
261 GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1086974 GGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
1087039 GTATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGTTCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
* * *
1087104 TTTTAAAAAATCCCAAACAGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAACGAGTCGTCTT
455 TTTTAAAAAATCCCGAACCGT-AAAAGTTTCGAAAATCATGAAAAATAG-AAAACGAGTCGTCTT
* * * *
1087169 GCCATTAAACTTCATGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGTCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1087234 TTGGCACGCAGAAATTTGAAGATGTGCCTAGACCCACCTACCACCCTAGCGATCCAC-GACTTGC
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTTGC
* * * *
1087298 GCATCCCGTCTCTCTAGCCGCCGTAGTGCCCGCCCGCCCGCCCCCCGCCCGCTCGTTTCTTCGGT
647 GCATCCCGTCTCTCTGGCCGACGTAGT----G-CTGCCCG---CCCGCCCGCTCGTTTCGTCGGT
* * ** * *
1087363 TGGCCTAGGCATACGGAGTTCATTCCCAGCCTAAGATTGGACC-AGACCGAGGGTTGCGGCAGTA
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGTAGCA
** * * * * *
1087427 GGATCGACAGCACACAGAGGGGGACCAGATCGGTCCCCAGCTTGGGCATCCCGCCCCTCTGGCCG
768 GGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * ** *
1087492 ACTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGTGTACAGAGTTCATTCCCAGTCTAA
833 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1087556 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACTGAGGGTTGCAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1087621 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCCTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * *
1087686 ACCTGACCGGCGGCATTAGGGTTCCGACGATCGGTGGGGCCGGCGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTG
* *
1087751 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCGTATCCCTCATCAATCCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1087816 AGCCCCTTGAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1087881 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
1087946 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGG-TAAAACTCCTTCCAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCAAAAA
1088010 AGTTTTAAAAAATCCCGAACCGTAAGAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 A-TTTTAAAAAATCCCGAACCGTAA-AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
1088075 TGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1088140 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACAGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * *
1088205 GCATCCTGTCTCTCTGGTCGACATAGTGCCCTCCTGCCCGCCCGCCCGCCCGTTCGTTTCGTCGG
647 GCATCCCGTCTCTCTGGCCGACGTAGTG-----CTGCCCGCCCGCCCG--C--TCGTTTCGTCGG
* * * * *
1088270 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGTGTTGCTGCAGCC
703 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCA
* * * * *
1088335 GAATCGGTAGCACATAGAAGGGGACCCGACCGATCACCGGCTTGCGCATCCCACCCCTCTGGCCG
768 GGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
1088400 ACTGAGCACCCGCACGCTCGTTTCGTGGGTTTACTTAGGCATACGAAGTTCATTCCCAATCTAA
833 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1088464 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** * * * *
1088529 CTCGGGCATGTACTGGTGCCGTATTTTTCTTCGTCGGGAAACCATCGTCAGAGCACCGCCGGGGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
1088594 ACCTAACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCGCATGATGTA
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
1088659 CGATTGGTGCTGGCACTTGGTCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * **
1088724 AGCCCCTTAAAGAGCATCTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCTAAT
260 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1088789 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
1088854 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA---C-TCC------
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
1088909 ---T------T-CCGAA----AAAA-TTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTTAAAAAATCCCGAACCGTAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * ** *
1088959 CATTAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGGATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
1089024 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
585 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
** * * * *
1089089 TCCCGTCTCTCTGGCCGACGTA--G-TAACCACCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCT
650 TCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *** **
1089151 TGCGGAGTTCATTCCCAGTCCAAGATCGGACTGAGCGGAAGGTTGCGGTAGCAGGATCAACAATA
715 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGTAGCA
** * * *
1089216 TGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
780 CATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
1089281 TACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
845 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1089333 GCATACGGAGTTCATTCCAAGTATAAGATCGGACCGGACCGAGGGTTACGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
1089398 CTCGGGTATCTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * * *
1089463 ACCTGACCGGTGGCATTGAGGTTCCGGCGATC-GGGGGGCGGGGGGGTGTGCGCACGTGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * **
1089527 GATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACAAACA
196 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1089592 -CCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
261 GCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
1089656 GGGGACACTTTTTTCAAATAATCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
1089721 TGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAAATCTTTTTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCAAAAA
* * ** * * * *
1089786 ATTTTAAAAAATCTCAAACCACAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCCTG
454 ATTTTAAAAAATCCCGAACCGTAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
1089851 CCAT-AAGACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATCTACAAGCCATAAAAATGGCA
519 CCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
1089915 TTGGCATGTAGAAATATGAAGATATTCCTAAACCCACCTACCACCCTATCGAT-C-CA------G
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * * * *
1089972 --T--C-TC-C-CTGGCCGACATAGTGCCCGCCTGTCCGCCCGTTCGTTTCGTCGATTGGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTAGTG-CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
1090030 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCGGACCGAGTGTTGCGGTAGCCGGATCGGTA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGTA
* * * ** *
1090095 GCACGTAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCTAGCCCCTCAGGCCGGCTGAGCGC
777 GCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
1090160 CCGCACGCTCGTTTGGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1090215 G-AT-C-G-G---A-T--C-G-----GAT----------CGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1090254 CTCAGGCATGTG-TCGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
66 CTCGGGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAG
* * * *
1090318 AACCTGACCAGCGGCATTGGGGTTCCGGCGGTCAGGGGGGCTGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
1090383 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1090448 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAAT
260 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1090513 AGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTTTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1090578 TGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCGAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * * * * *
1090643 ATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATGGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGT-AAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
1090708 GCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCCTAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
1090773 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCGACGGCTTGCA
583 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
*
1090838 CATCCCGTCTCTCTGGCCGACGTA--G-TGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * * *
1090900 CATACGGAGTTCATTCTTAGTCTAAGATCAGACCGGACCAAGGGTTACGATAGCAGGATCGGTAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGTAG
* * * **
1090965 CACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCTAGCTGAGCGCC
778 CACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
1091030 TGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCTTTCCCAGTCTAA
843 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1091084 GCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTTGCAGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1091149 CTCGTGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
* * *
1091214 ACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
1091279 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1091344 AGCCTCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAAT
260 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1091409 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTCTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
1091474 TGCATGGCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCCCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* *
1091539 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTCG-AAATCATGAAACATA-AAAACGAGTCGTCT
454 ATTTTAAAAAATCCCGAACCGT-AAAAG-TTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
1091602 TCCCATGAAACTTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAAATG
517 TGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATG
* * * * *
1091667 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCATATCGATCTACGGCTT
580 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* * * * * * *
1091732 GCGCAACTCGTCTCTTTGGACAACGTAGTGCT---CGCCCGCCCGCTCGTTTCATCGGTTGGTTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
1091794 AGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCAAGGGTTACGGTAGAAGGATCG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGTAGCAGGATCG
* ** * ** * * *
1091858 ATAGCACACCGAGTGGGACCCGGCCGATCCCCGACTTGCTCATCCTGCCCCTCTGGCCGGCTGAG
774 GTAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
1091923 CGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAA
839 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1091981 GCAAATGGAGTTCATTCCCAGTCTAAAAT-GAGACCGGACCGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGGCAGCACATGCTGG
*** * * **
1092045 GCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCACCCGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAG
** *
1092110 AACCTGATTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
1092175 CGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCTTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1092240 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG-CGTGAAA
260 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAA
* * *
1092304 TAGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
1092369 ATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGAGCCAAAATTACTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAA
* *
1092434 AATTTTAAAAAATCCCGAACCGCAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCT
453 AATTTTAAAAAATCCCGAACCGTAAAA-GTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
** *
1092499 TGCCATGAAACTTCATATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * ** * *
1092564 ATCGACATGCAGAAATATGTTGATGTGCCTAAACCCACCTACCAACCTATCGATCCAC-GACGTG
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTTG
* ** * * * * *
1092628 TGCATCCCGTCTCTCTAACCGGCGTAGTGCCTTCCTGACCGCCCACCCGCTCGATTCATCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTG-----CTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * ** * *
1092693 ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGATTGAGGGTTGCAGTAGTAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGA
* * * * *
1092758 TCGGCAGCAGATAAAGGGGGACCCAATTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
771 TCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
1092823 GAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1092884 GCATACGGAGTTC-TTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
1092948 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA-CTGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATC-GGAGCATCGCCGGAG
* * * * * *
1093012 AACCTGACCGGCGGCATTGCGGTTCTGGTGATCGAGGGGGCCAGGGGGTTTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
1093077 CGATGGGTGCTGGTACTT-GCCCTTATATTCGCCCCCTATCCCTCATCAAACTTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1093141 ACCCCCATATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1093206 AGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1093271 TGCATGCCAAGAAAAATACAATGATCACGTCTACCAAGTTTGGAGCCAAAATTACTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
** *
1093336 TTTTAAAAAATCCCGAACCACAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTTAAAAAATCCCGAACCGTAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
1093401 CATGAAACTTCACGTGATGGCTTATGGGACCCTTGTATGAATATACAAGCC-TAAA
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1093456 CCCACCTACC
Statistics
Matches: 5149, Mismatches: 624, Indels: 258
0.85 0.10 0.04
Matches are distributed among these distances:
855 1 0.00
856 105 0.02
857 274 0.05
858 146 0.03
859 2 0.00
860 1 0.00
866 7 0.00
867 242 0.05
868 9 0.00
869 504 0.10
870 3 0.00
871 6 0.00
872 3 0.00
873 22 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 1 0.00
878 12 0.00
879 4 0.00
880 5 0.00
881 181 0.04
882 182 0.04
883 3 0.00
885 3 0.00
887 6 0.00
888 4 0.00
891 2 0.00
892 7 0.00
893 135 0.03
894 2 0.00
895 229 0.04
896 678 0.13
897 453 0.09
898 4 0.00
899 83 0.02
900 33 0.01
901 225 0.04
902 320 0.06
903 202 0.04
904 141 0.03
905 2 0.00
906 1 0.00
907 176 0.03
908 723 0.14
909 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
GCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGTAGCAC
ATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1089336 original size:26 final size:26
Alignment explanation
Indices: 1089307--1089359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1089297 GTTGACTTAG
* * *
1089307 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTATAA
1089333 GCATACGGAGTTCATTCCAAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
1089359 G
1 G
1089360 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:1091090 original size:26 final size:26
Alignment explanation
Indices: 1091054--1091110 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
1091044 GTGGGTTGAC
*
1091054 CTAAGCATACGGAGTTCTTTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
1091080 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
1091106 CTAAG
1 CTAAG
1091111 GTCAGACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:1092094 original size:897 final size:894
Alignment explanation
Indices: 1088925--1093455 Score: 5825
Period size: 896 Copynumber: 5.1 Consensus size: 894
1088915 AAAAATTTTG
* * *
1088925 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAAGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
1088990 ATTGTATGAATTTACAAGAAATAAAAATGGGATTGGCACACAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * * *
1089055 CCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTAAC-CAC
131 CCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGACGTAGT-GCTCGC
* * * * * * * *
1089119 CCGTCCGCTCATTTCGTCGGTTGGCTTAGGCTTGCGGAGTTCATTCCCAGTCCAAGATCGGA-CT
194 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * *** ** ** * *
1089183 GAGCGGAA-GGTTGCGGTAGCAGGATCAACAATATGTAGAGGGGGACCCGACCGATCCCCGGCTT
259 GA-C-CAAGGGTTACGGTAGAAGGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGACTT
* * * *
1089247 GTGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATA
322 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
1089312 CGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTATAAGATCGGACCGGACCGAGG
387 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * * * **
1089377 GTTACGGCAGTACATGCTGGGCTCGGGTATCTGCTGGTGTCACATTTTTCTTCACCGGGGCACCA
452 GTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* * * *
1089442 TCACCGGAGCATCACCGAAGAACCTGACCGGTGGCATTGAGGTTCCGGCGATC-GGGGGGCGGGG
517 TCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGG
* * * *
1089506 GGGTGTGCGCACGTGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
582 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCCTATCCCTC
** *
1089571 ATCAAACCTCGAGAACAAACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
647 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * **
1089636 GCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAATCACAAAATCTTGTACACTTCGAG
712 GCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * * *
1089701 TTCTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTGCCAAGTTTGGGG
777 TTTTTAGCTGAATTGTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGAG
* ** * *
1089766 CCAAAAAT-CTTTTTGAAAAAATTTTAAAAAATCTCAAACC--ACAAAAGTTTCA
842 CCAAAACTAC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCA
* * *
1089818 AAAATCGTGAAAAATAGAAAACAAGTCGTCCTGCCAT-AAGACTTCACGTGAAGGCTTAAGGGAC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGAC
* * *** * *
1089882 CATTGTGTGAATCTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATATTCCTAAA
65 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA
* * *
1089947 CCCACCTACCACCCTATCGATCCA--------G--T--C-TC-C-CTGGCCGACATAGTGCCCGC
130 CCCACCTACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGACGTAGTGCTCG-
* * * *
1089997 CTGTCCGCCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAA
193 C---CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * ** * *
1090062 ATCGGACCGAGTGTTGCGGTAGCCGGATCGGTAGCACGTAGAGGGGGACTCGATCGATCCCCGAC
255 ACCGGACCAAGGGTTACGGTAGAAGGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGAC
** * * *
1090127 TTGCGCATCTAGCCCCTCAGGCCGGCTGAGCGCCCGCACGCTCGTTTGGTGGGTTGATTTAGGCA
320 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
1090192 TACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T--C-G-----GAT----------CGA
385 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* *
1090231 GGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTG-TCGGTGCCATATTTTTCTTCGTCGGGGCA
450 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCACATTTTTCTTCGTCGGGGCA
** * * * * * *
1090295 CCATCGTCGGAGCATCGCTGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGGTCAGGGGGGCT
514 CCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
*
1090360 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCC
579 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCCTATCC
*
1090425 CTCATCAAACCTCGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
644 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
1090490 ATAGCCATTAAAGTGTCTAAAATAGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTCC
709 GTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
1090555 GAGTTTTTAGCTGAATTGTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTG
774 GAGTTTTTAGCTGAATTGTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
1090620 GGGCGAAAACTCCTTCCGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCA
839 GAGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* * * *
1090676 AAAATCGTGAAAAATGGAAAATGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
1090741 ATTGTATGAATTTACGAGCCCTAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * * * *
1090806 CCACCTACCACCTTATCGATCGACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCACC
131 CCACCTACCACC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGACGTAGTGCTCGCC
* **
1090871 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCTTAGTCTAAGATCAGACCGG
195 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * *
1090936 ACCAAGGGTTACGATAGCAGGATCGGTAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCG
260 ACCAAGGGTTACGGTAGAAGGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCG
* ** * * *
1091001 CATCCCGCCCCTCTAGCTAGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGG
325 CATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * *
1091066 AGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGGTCAGACCAGACCGAGGGTT
390 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * *
1091131 GCAGCAGCACATGCTGGCCTCGTGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
455 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCA
* * *
1091196 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGG
520 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGG
* *
1091261 GTGTACGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
584 GTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCCTATCCCTCAT
* * * *
1091326 CAAACCTCGAGAACTCACAGCCTCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAAC
649 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
1091391 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTT
714 CATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * *
1091456 TTTAGCTGAATTGTTCTGTGCATGGCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
779 TTTAGCTGAATTGTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCC
* ** *
1091521 AAAACTCCCCCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTC-
844 AAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCA
* * * *
1091572 GAAATCATGAAACATA-AAAACGAGTCGTCTTCCCATGAAACTTTCATGTGAAGGCTTAAGGGAC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGAC
*
1091636 CGTTGTATGAATTTACAAGCCATAAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
65 CATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* * * * * *
1091701 ACCCACCTGCCACCATATCGATCTACGGCTTGCGCAACTCGTCTCTTTGGACAACGTAGTGCTCG
129 ACCCACCTACCACC-TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGACGTAGTGCTCG
* * *
1091766 CCCGCCCGCTCGTTTCATCGGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC
193 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * **
1091831 AGACCAAGGGTTACGGTAGAAGGATCGATAGCACACCGAGTGGGACCCGGCCGATCCCCGACTTG
258 GGACCAAGGGTTACGGTAGAAGGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGACTTG
* * * * *
1091896 CTCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCAGAC
323 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * *
1091961 GGAGTTCATTCCCAGTCTAAGCAAATGGAGTTCATTCCCAGTCTAAAATGAGACCGGACCGAGGG
388 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* ***
1092026 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCAT
453 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * ** *
1092091 CACCCGAGCATCATCGGAGAACCTGATTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
518 CACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
* *
1092156 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCTTCA
583 GGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCCTATCCCTCA
*
1092221 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
648 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* *
1092286 CCATTAAAGTG-CGTGAAATAGGGACATTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAG
713 CCATTAAAGTGTC-TGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* *
1092350 TTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTAGAG
777 TTTTTAGCTGAATTGTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGAG
* * * * *
1092415 CCAAAATTACTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAATGTTTCG
842 CCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* **
1092468 AAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATATGAAGGCTTAAGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * ** **
1092533 ATTGTATGAATTTACAAGCAATAAAAATGGCATCGACATGCAGAAATATGTTGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
* * * * *
1092598 CCACCTACCAACCTATCGATCCACGACGTGTGCATCCCGTCTCTCT-AACCGGCGTAGTGCCTTC
131 CCACCTACC-ACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGA-CGACGTAGTG-----
* * * *
1092662 CTGACCGCCCACCCGCTCGATTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
189 CT---CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* *** * * * * * * * *
1092727 TCAGACTGGATTGAGGGTTGCAGTAGTAGGATCGGCAGCAGATAAAGGGGGACCCAATTGATCCC
251 TCAGACCGGACCAAGGGTTACGGTAGAAGGATCGGTAGCACATAGAGGGGGACCCGATCGATCCC
* *
1092792 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTA
316 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
*
1092857 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-TTCCCAGTCTAAGATCAGACTGGA
381 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * *
1092921 CCGAGGGTTACGGCAGCACATTCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
446 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGG
* * * * * *
1092986 GCACCATCACTGGAGCATCATCGGAGAACCTGACCGGCGGCATTGCGGTTCTGGTGATCGAGGGG
511 GCACCATCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * *
1093051 GCCAGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTATATTCGCCCCCTA
576 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCCTA
* * *
1093115 TCCCTCATCAAACTTCGAGAACTCACACCCCCATATAGAGCATTTGAGATTTTACAGGTTTGCTG
641 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
1093180 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
706 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1093245 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAATGATCACGTCTACCAAGT
771 TTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGT
*
1093310 TTGGAGCCAAAATTACTTCC-AAAAAATTTTAAAAAATCCCGAACC--ACAAAAGTTTCA
836 TTGGAGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCA
* *
1093367 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGATGGCTTATGGGACC
1 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
1093432 CTTGTATGAATATACAAGCC-TAAA
66 ATTGTATGAATTTACAAGCCATAAA
1093456 CCCACCTACC
Statistics
Matches: 3187, Mismatches: 375, Indels: 147
0.86 0.10 0.04
Matches are distributed among these distances:
855 1 0.00
856 103 0.03
857 281 0.09
858 143 0.04
859 3 0.00
866 3 0.00
868 1 0.00
869 191 0.06
870 3 0.00
871 4 0.00
872 3 0.00
873 18 0.01
874 1 0.00
875 1 0.00
876 1 0.00
877 2 0.00
878 15 0.00
879 4 0.00
880 4 0.00
881 4 0.00
882 176 0.06
883 4 0.00
885 3 0.00
892 2 0.00
893 135 0.04
894 1 0.00
895 223 0.07
896 685 0.21
897 459 0.14
898 5 0.00
899 85 0.03
900 27 0.01
901 224 0.07
902 177 0.06
903 195 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGACGTAGTGCTCGCCC
GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCAAGGGTTACGGTAGAAGGATCGGTAGCACATAGAGGGGGACCCGATCGATCCCCGACTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCAC
CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTCGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTGTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAA
AACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
Found at i:1092906 original size:25 final size:26
Alignment explanation
Indices: 1092858--1092909 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
1092848 GTTGACTTAG
1092858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1092884 GCATACGGAGTTC-TTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1092909 G
1 G
1092910 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1093587 original size:26 final size:26
Alignment explanation
Indices: 1093558--1093610 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1093548 GTTGGCTTAG
* * *
1093558 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTATAA
1093584 GCATACGGAGTTCATTCCAAGTATAA
1 GCATACGGAGTTCATTCCAAGTATAA
1093610 G
1 G
1093611 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTATAA
Found at i:1094491 original size:26 final size:26
Alignment explanation
Indices: 1094455--1094507 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1094445 GTTGACTTAC
1094455 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1094481 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1094507 G
1 G
1094508 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1095373 original size:25 final size:26
Alignment explanation
Indices: 1095339--1095392 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
1095329 TGGTTGACTT
1095339 AGCATACGGA-TTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTCCCAGTCTA
*
1095364 AGCATACGGAGTTTCATTGCCAGTCTA
1 AGCATACGGAG-TTCATTCCCAGTCTA
1095391 AG
1 AG
1095393 ATTGTACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 10 0.38
27 16 0.62
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAGTCTA
Found at i:1095721 original size:883 final size:882
Alignment explanation
Indices: 1093534--1096046 Score: 3219
Period size: 897 Copynumber: 2.8 Consensus size: 882
1093524 CCTGCCCGTC
* * *
1093534 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTCGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
1093599 TCCAAGTATAAGATCGGACTGGACCGAGGGTTACAGCAGTACATGCTGGGCTCGGGTATCTGCTG
66 TCC-AGTATAAGATTGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
1093664 GTGTCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGACCGGTGGCA
130 GTGACGCATTTTTCTTCATCGGGGCACCATCG-CGGAGCATCGCCGTAGAACCTGACCGGCGGCA
* * * * *
1093729 TTGAGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGGTGGTAC
194 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTAC
**
1093794 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACAAACACCCCATTAAAGAGCA
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TTAAAGAGCA
* *
1093859 TTTAAGATTTTACAGGTTTGCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
322 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
1093924 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTCTGTGCATGGCAATAAAAT
387 AATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT-TTTTTTGCATGCCAACAAAAT
* ***
1093989 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCCCCGAAAAAATTTTAAAAAATCCCAA
451 ACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAA
* * * * * * *
1094054 ACCGTAAAAAGTTTTCAAAATCATGAAACATAAAAAACGAGTCGTCTTCCCATGAAACTTCA-TT
516 A-CGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
1094118 GAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGCATTGGCA-CAAGAAATATG
580 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGCATTGGCAGC-AGAAATATG
* *
1094182 AAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCC
644 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C
* * * * *
1094247 GGCGTCGTGCCCGCCCGCCCACCCGTCCGCTTATTTCGTCGGTTGCTTAGGCATACGGAGTTCAT
708 AGCGTAGT----GCCCG-CCA--C-TCCGCTCATTTCATCGGTTGCTTAGCCATACGGAGTTCAT
* * ** *
1094312 TCCCAGTCTAAGATCAGATCGGACGGAGGGTTCTGACAGCAAGATTGACAGCACATAGAGAGGAC
765 TCCCAATCTAAGATCAGATCAGACAAAGGGTTCTGACAGCAAGATGGACAGCACATAGAGAGGAC
* * **
1094377 CCGGCTGATCCCCGACTTGGACATCGCGCCCCTTTACCCGGCTAAGTGCCTGCA
830 CCGGCTGA-CCCCGACTTGGACATCCCGCCCCTTTACCCAGCTAAGCACCTGCA
*
1094431 CGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGTCGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * ** *
1094496 TCCCAGTGTAAGATTGGACCGGACCGAAGGTTGTGGCAGCACATGCTGGGCACGGGCATGTGCTG
66 T-CCAGTATAAGATTGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTG
* *
1094561 GTGATGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGTAGAACCTGACCGGCGGCA
130 GTGACGCATTTTTCTTCATCGGGGCACCATCGC-GGAGCATCGCCGTAGAACCTGACCGGCGGCA
* *
1094626 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGCTGCGGGTAC
194 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG-TGCTGGTAC
** * *
1094691 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGTTGAGAAGTCAAATTCCCCTTAAAGAG
258 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCAAGAACTCACA--CCCCTTAAAGAG
* * *
1094756 CATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTTAAATGGGGACACTCTTTT
320 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
*
1094820 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGGATGCCAACAAAA
385 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGCATGCCAAC-AAA
*
1094885 ATACAAGGATCTCGTCTA-TAAGTTTGGGGCC-AAACTCTTTCCGAAAAAATTTTAAAAAATCCC
449 ATACAAGGATCTCGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCC
1094948 AAATCGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
514 AAA-CGAAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
1095013 GTGAAGGCTTAAGGGACCATTGTATGACTTTACAAGCCATAAAAAGGAATTGGCAGGCAGAAATA
578 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGCATTGGCA-GCAGAAATA
*
1095078 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
642 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* *
1095143 CAGCGTAGTGCCCGCCA-T-CGCTCGTTTCATCGGTTGGCTTAGCCGTAC-GAGTTC-TTCCCAA
707 CAGCGTAGTGCCCGCCACTCCGCTCATTTCATCGGTT-GCTTAGCCATACGGAGTTCATTCCCAA
** ** * * ** * *
1095204 TCTAAGATTGGA-CTAGACAAAGGGTTAC-GGTAGTAGGATCGGTTAGCACGTAGAGGGGGACCC
771 TCTAAGATCAGATC-AGACAAAGGGTT-CTGACAGCAAGAT-GGACAGCACATAGA-GAGGACCC
* * * * * * *
1095267 -GATCGA-CCTGGC-TGGCGCATCCCG-CCCTTCTAGCTAGCTGAGCACCTGCA
832 GGCT-GACCCCGACTTGG-ACATCCCGCCCCTT-TACCCAGCTAAGCACCTGCA
* *
1095317 CGCTCATTTCGTTGGTTGACTTA-GCATACGGA-TTCATTCCCAGTCTAAGCATACGGAGTTTCA
1 CGCTCGTTTCGTCGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG-TTCA
* * *
1095380 TTGCCAGTCTAAGATTGTACTAGA-CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCT
65 TT-CCAGTATAAGATTGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCT
* ** *
1095444 GGTGCCGCA-TTTTCTTCATCATGGCACCATCGTCGGAGCATCGCCGTAGAACCT-AGCCGACGG
129 GGTGACGCATTTTTCTTCATCGGGGCACCATCG-CGGAGCATCGCCGTAGAACCTGA-CCGGCGG
*
1095507 CATTGGGGGTTCTGACGATCGGGCGGGGCCGGGGGTGTGTGC-C-CATGATGTGCGATGCGTGCT
192 CATT-GGGGTTCCGACGATCGGG-GGGGCCGGGGG-GTGTGCGCACATGATGTGCGATG-GTGCT
* *
1095570 GGTAC-TGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTTAA
253 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCC-TTAA
*
1095634 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTT
316 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1095699 TTTTCAAATTGGTCAC-AAATCTTGTACACTTCTAG-TTTTAGCTGAATTTTTTTGTGCATGCCA
381 TTTTCAAA-TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-TGCATGCCA
* *
1095762 ACAAAATACAAGGATCAT-GTCTACCAAGTTTGGGGCCAAAAATCCTTT-CGAAAAAGTTTT-AA
444 ACAAAATACAAGGATC-TCGTCTACCAAGTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAA
* * *
1095824 AAATCCCCAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAACGGGTCGTCTTGCCATGA
507 AAATCCCAAACGA-AAAAAGTTTTGAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGA
* *
1095889 AACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAAATGCCATTGGCA
570 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAA-GGCATTGGCA
* *
1095954 TGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
633 -GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CC
* *
1096019 CGTCTCTCTGGCAGGCGTTGTACCCGCC
696 CGTCTCTCTGGCA-GCGTAGTGCCCGCC
1096047 CGCTCGCCCG
Statistics
Matches: 1428, Mismatches: 149, Indels: 87
0.86 0.09 0.05
Matches are distributed among these distances:
881 4 0.00
882 65 0.05
883 220 0.15
884 197 0.14
885 63 0.04
886 150 0.11
887 47 0.03
888 32 0.02
892 3 0.00
893 5 0.00
896 89 0.06
897 339 0.24
898 193 0.14
899 17 0.01
900 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (882 bp):
CGCTCGTTTCGTCGGTTGACTTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCAGTATAAGATTGGACTGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGG
TGACGCATTTTTCTTCATCGGGGCACCATCGCGGAGCATCGCCGTAGAACCTGACCGGCGGCATT
GGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAATACAAG
GATCTCGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACGAA
AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGGCATTGGCAGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGCGTAGT
GCCCGCCACTCCGCTCATTTCATCGGTTGCTTAGCCATACGGAGTTCATTCCCAATCTAAGATCA
GATCAGACAAAGGGTTCTGACAGCAAGATGGACAGCACATAGAGAGGACCCGGCTGACCCCGACT
TGGACATCCCGCCCCTTTACCCAGCTAAGCACCTGCA
Found at i:1096120 original size:26 final size:26
Alignment explanation
Indices: 1096083--1096135 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1096073 GTTGGCCTAG
*
1096083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1096109 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1096135 G
1 G
1096136 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1096805 original size:748 final size:740
Alignment explanation
Indices: 1095340--1096853 Score: 2223
Period size: 744 Copynumber: 2.0 Consensus size: 740
1095330 GGTTGACTTA
* * * *
1095340 GCATACGGA-TTCATTCCCAGTCTAAGCATACGGAGTTTCATTGCCAGTCTAAGATTGTACTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTTCATTCCCAGTCTAAGATAGTACCAGA
* * * * * *
1095404 CGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTCTTCATCATGGC
66 CGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTCTTCACCAGGGC
* *
1095469 ACCATCGTCGGAGCATCGCCGTAGAACCTAGCCGACGGCATTGGGGGTTCTGACGATCGGGCGGG
131 ACCATCGTCGGAGCATCGCCGGAGAACCTAGCCGACGGCATTGGGGGTTCCGACGATCGGGCGGG
* *
1095534 GCCGGGGGTGTGTGCCCATGATGTGCGATGCGTGCTGGTACTGGCCTTTATATTGGCCCCCTATC
196 GCCGGGGGGGTGTGCCCATGATGTGCGATGCGTGCTGGTACTGGCCCTTATATTGGCCCCCTATC
1095599 CCTCATCAAACCTCAAAAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
261 CCTCATCAAACCTCAAAAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
1095664 CAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATTGGTCACAAATCTTGTACACT
326 CAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATTGGTCACAAATCTTGTACACT
*
1095729 TCTAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCATGTCTACCAAGTTTG
391 TCTAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATAAAAGGATCATGTCTACCAAGTTTG
* * *
1095794 GGGCCAAAAATCCTTTCGAAAAAGTTTTAAAAATCCCCAACCACAAAAAGTTTTGAAAATCGTGA
456 GGGCCAAAAATCCTTCCGAAAAAATTTAAAAAATCCCCAACCACAAAAAGTTTTGAAAATCGTGA
* * *
1095859 AAAATAGAAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGA
521 AAAATAGAAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGA
** *
1095924 ATTTACAAGCCATAAAAAATGCCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACCTAC
586 ATTTACAAGCCATAAAAAATGCCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
1095989 CACCCTATCGATCCACGACTTGCGCATCCCCGTCTCTCTGGCAGGCGTTGTACCCGCCCGCTCGC
651 CACCCTATCGATCCACGACTTGCGCATCCCCGTCTCTCTGGCAGGCATAGTACCCGCCCGCCCGC
*
1096054 CCGCACACTCCTTTCGTCAGTTGGCCTAG
716 CCG----CTCCTTTCATCAGTTGGCCTAG
1096083 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG-TTCATTCCCAGTCTAAGATCAG-ACCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTTCATTCCCAGTCTAAGAT-AGTACCAG
* *
1096146 ATCGAGGGTTGC-GACAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTCTTCGCCGG
65 A-CGAGGGTTGCAG-CAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTCTTCACCAG
* *
1096210 GGCACCATCG-CTGGAGCATCGCCGGAGAAACCT-GATCGGCGGCATT-GGGGTTCCGACGATCG
128 GGCACCATCGTC-GGAGCATCGCCGGAG-AACCTAG-CCGACGGCATTGGGGGTTCCGACGATCG
*
1096272 GG-GGGGTCGGGGTGGGGGTGTGCGCACATGATGTGCGATG-GCTGCTGGTACTTGGCCCTTATA
190 GGCGGGG-C-CGG-GGGGGTGTGC-C-CATGATGTGCGATGCG-TGCTGGTAC-TGGCCCTTATA
* * *
1096335 TTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTT
248 TTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTTAAAGAGCATTTGAGATTTT
*
1096399 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATT-GTCACA
313 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATTGGTCAC-
1096463 AAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATC
377 AAATCTTGTACACTTCTAG-TTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAATAAAAGGATC
* **
1096528 ATGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAAAT-CCCAAGCC-GTA
440 ATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT--AAAAAATCCCCAA-CCACAA
* * *
1096591 AAAGTTTTGAAAATCGTGAAAAATAG-AAAATGTGTCGTCTTGCCTTGAAACTTCACGTGAAGGC
502 AAAGTTTTGAAAATCGTGAAAAATAGAAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
1096655 TTAAAGGACCATTGTAAGAATTTACAGGCCAT-AAAAATGGCATTGGCACACAGAACTATGAAGA
567 TTAAAGGACCATTGTAAGAATTTACAAGCCATAAAAAATGCCATTGGCACACAGAAATATGAAGA
* *
1096719 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGC
632 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCCGTCTCTCTGGCAGGC
** * * *
1096783 ATAGTGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
697 ATAGTACCCGCCCGCCCGCCCGCTCCTTTCATCAGTTGGCCTAG
1096827 GCATACGGAGTTCATTCCCAGTCTAAG
1 GCATACGGAGTTCATTCCCAGTCTAAG
1096854 ATCAGACCAG
Statistics
Matches: 697, Mismatches: 54, Indels: 39
0.88 0.07 0.05
Matches are distributed among these distances:
743 38 0.05
744 166 0.24
745 16 0.02
746 9 0.01
747 7 0.01
748 153 0.22
749 152 0.22
750 116 0.17
751 32 0.05
752 8 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (740 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTTCATTCCCAGTCTAAGATAGTACCAGA
CGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTCTTCACCAGGGC
ACCATCGTCGGAGCATCGCCGGAGAACCTAGCCGACGGCATTGGGGGTTCCGACGATCGGGCGGG
GCCGGGGGGGTGTGCCCATGATGTGCGATGCGTGCTGGTACTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCAAAAACTCACACCCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATTGGTCACAAATCTTGTACACT
TCTAGTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAATAAAAGGATCATGTCTACCAAGTTTG
GGGCCAAAAATCCTTCCGAAAAAATTTAAAAAATCCCCAACCACAAAAAGTTTTGAAAATCGTGA
AAAATAGAAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGA
ATTTACAAGCCATAAAAAATGCCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGACTTGCGCATCCCCGTCTCTCTGGCAGGCATAGTACCCGCCCGCCCGC
CCGCTCCTTTCATCAGTTGGCCTAG
Found at i:1097022 original size:26 final size:26
Alignment explanation
Indices: 1096986--1097038 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1096976 GTTGACTTAG
1096986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1097012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1097038 G
1 G
1097039 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1099793 original size:25 final size:26
Alignment explanation
Indices: 1099745--1099796 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
1099735 GTTGACTTAG
1099745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1099771 GCATACGGAGTTC-TTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1099796 G
1 G
1099797 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1100125 original size:904 final size:889
Alignment explanation
Indices: 1098074--1100341 Score: 3045
Period size: 904 Copynumber: 2.5 Consensus size: 889
1098064 NNNNNNNNTC
**
1098074 GGGCACCATCACGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT-TCGGTGATCGGGG
1 GGGCACCATCACGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCT-GGTGATCGGGG
* * * *
1098138 GGCGAGGGCGGGTGTACGCACATTGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGGCC
65 GGCCA-GG-GGGTGTGCGCACA-TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-CGCC
* * *
1098203 CCCTATCCCTCATC-AACCTCGAGAACTCACAGCCTCTTAAAAGAGGCATTTAAGATTTTACAGG
126 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGA-GCATTTGAGATTTTACAGG
*
1098267 TTTGCTGCCAGTAACCATTAAAGTGTCTGAAAT-GGGACAC-TTTTT-AAATGGTCACAAAAT-T
189 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * * *
1098328 TGTACACTTTGAGTTTTTAGCTGAATTGTTCTGTGCATGGCAATAAAAAATACAAGGATCACGTT
254 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-GAAAAATACAAGGATCACG-T
* * ** * *
1098393 CTACCAAGTTTGGGGCCAAAACT-CCCCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTT
317 CTACCAAGTTTGGAGCCAAAATTACTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-T
1098457 TTCGAAAATCATGAAACATA-AAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
380 TTCGAAAATCATGAAA-ATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGG
* * *
1098521 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
444 GACCATTGTATGAATTTACAAGCAATAAAAATGGCATCGACACACAGAAATATGAAGATGTGCCT
* * * * * * *
1098586 AAACCCACCTGCCACATATCATCTACGGCTTGCGCAACTCGTCTCTTTGGACAACGTATGCTCGC
509 AAACCCACCTACCACATATCATCCACGACGTGCGCAACCCGTCTCTCTGAACAACGTATGCTCGC
* ** * * *
1098651 CGCCCCCGCTCGTTTCATCGGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC
574 CGCCCCCGCTCGATTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
* * ** * **
1098716 AGACCAAGGGTTACGGTAGAAGGATCGATAGCACACCGAGTGGGACCCGGCCGATCCCCCGACTT
639 AGACCAAGGGTTACAGTAGAAGGATCGACAGCACACAAAGGGGGACCCAACCGATCCCCCGACTT
* *
1098781 GCTCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCAGA
704 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCAGA
* *
1098846 CGGAGTTTCATTCCAGTCTAAGCAAATGGAGTTCATTCCAGTCTAAAATGAGACCGGACCGAGGG
769 CGGAGTTTCATTCCAGTCTAAGCAAACGGAGTTCATTCCAGTCTAAAATCAGACCGGACCGAGGG
** * * ***
1098911 TTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCG
834 TTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCG
* ** * **
1098967 GGGCACCATCACCCGAGCATCATCGGAGAACCTGA-TTGCGGCATTGGGGTTCCGACGATCGGGG
1 GGGCACCATCA-CGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGG
*
1099031 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTATTCGCCCCC
65 GGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTCGCCCCC
* *
1099096 TATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTGAGATTTTATAGGTTTG
129 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTG
* *
1099161 CTGCCAGTAGCCATTAAAAGTG-CGTGAAATAGGGACATTTTTTTCAAATGGTCGCAAAATCTTG
193 CTGCCAGTAGCCATT-AAAGTGTC-TGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
1099225 TACACTTCGAGTTTTTAGCTGAATTTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTA
256 TACACTTCGAGTTTTTAGCTGAA-TTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTA
* *
1099290 CCAAGTTTAGAGCCAAAATTACTTCCAAAAAATTTTAAAAAATCCCGAACCGCCAAAATGTTTCG
320 CCAAGTTTGGAGCCAAAATTACTTCCAAAAAATTTTAAAAAATCCCGAACCG-CAAAAAGTTTCG
* *
1099355 AAAATCATTGAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATATGAAGGCTTAAGGGACC
384 AAAATCA-TGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACC
** **
1099420 ATTGTATGAATTTACAAGCAATAAAAATGGCATCGACATGCAGAAATATGTTGATGTGCCTAAAC
448 ATTGTATGAATTTACAAGCAATAAAAATGGCATCGACACACAGAAATATGAAGATGTGCCTAAAC
* * * **
1099485 CCACCTACCAACCTATCGATCCACGACGTGTGCATCCCGTCTCTCT-AACCGGCGTAGTGCCTTC
513 CCACCTACC-ACATATC-ATCCACGACGTGCGCAACCCGTCTCTCTGAA-CAACGTA-TG-C-T-
1099549 CTGACCGCCCACCCGCTCGATTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
571 C-G-CCG-CC-CCCGCTCGATTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
** *** * * * * * * **
1099614 TCAGACTGGATTGAGGGTTGCAGTAGTAGGATTGGCAGCAGATAAAGGGGGACCCAATTGAT-CC
632 TCAGACCAGACCAAGGGTTACAGTAGAAGGATCGACAGCACACAAAGGGGGACCCAACCGATCCC
* * * *
1099678 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTT
697 CCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTT
* * * *
1099743 AGGCATACGGAG-TTCATTCCCAGTCTAAGCATACGGAGTTC-TTCCCAGTCTAAGATCAGACTG
762 AGGCAGACGGAGTTTCATT-CCAGTCTAAGCAAACGGAGTTCATT-CCAGTCTAAAATCAGACCG
*
1099806 GACCGAGGGTTACGGCAGCACATTCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTTCTTCGTC
825 GACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACA-TTTTTCTTCGTC
1099871 G
889 G
*
1099872 GGGCACCATCACTGGAGCATCATCGGAGAACCTGACCGGCGGCATTGCGGTTCTGGTGATCGAGG
1 GGGCACCATCAC-GGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCG-GG
*
1099937 GGGCCAGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCC
64 GGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCC
* * *
1100002 TATCCCTCATCAAACTTCGAGAACTCACACCCCCATATAGAGCATTTGAGATTTTACAGGTTTGC
129 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1100067 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
194 TGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
1100132 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAATGATCACGTCTACCAA
259 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAA
* *
1100197 GTTTGGAGCCAAAATTACTTCCAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAAT
324 GTTTGGAGCCAAAATTACTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAT
* * * *
1100262 CATGAAAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTGATGGCTTTATGGGACCCTTG
389 CATG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGC-TTAAGGGACCATTG
*
1100326 TATGAATATAACAAGC
452 TATGAAT-TTACAAGC
1100342 CTAAACCCAC
Statistics
Matches: 1208, Mismatches: 130, Indels: 64
0.86 0.09 0.05
Matches are distributed among these distances:
889 3 0.00
890 86 0.07
891 50 0.04
892 8 0.01
893 42 0.03
894 95 0.08
895 168 0.14
896 21 0.02
897 26 0.02
898 2 0.00
899 1 0.00
900 1 0.00
901 21 0.02
902 59 0.05
903 108 0.09
904 222 0.18
905 170 0.14
906 71 0.06
907 54 0.04
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (889 bp):
GGGCACCATCACGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATCGGGGG
GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGT
TTGGAGCCAAAATTACTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCA
TGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCAATAAAAATGGCATCGACACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACATATCATCCACGACGTGCGCAACCCGTCTCTCTGAACAACGTATGCTCGCCGCCCCCGCTCG
ATTCATCGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTT
ACAGTAGAAGGATCGACAGCACACAAAGGGGGACCCAACCGATCCCCCGACTTGCGCATCCCGCC
CCTCTGGCCGGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCAGACGGAGTTTCATT
CCAGTCTAAGCAAACGGAGTTCATTCCAGTCTAAAATCAGACCGGACCGAGGGTTACGGCAGCAC
ATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCG
Found at i:1100478 original size:27 final size:27
Alignment explanation
Indices: 1100448--1100503 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
1100438 CGGTGGCTTT
* * *
1100448 AGGCATACGGAGTTTATTCCCAGTCTA
1 AGGCATACGGAGTTCATTCCAAGTATA
1100475 AGGCATACGGAGTTCATTCCAAGTATA
1 AGGCATACGGAGTTCATTCCAAGTATA
1100502 AG
1 AG
1100504 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (27 bp):
AGGCATACGGAGTTCATTCCAAGTATA
Found at i:1101386 original size:26 final size:26
Alignment explanation
Indices: 1101350--1101402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1101340 GTTGACTTAC
1101350 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1101376 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1101402 G
1 G
1101403 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1102273 original size:26 final size:26
Alignment explanation
Indices: 1102244--1102296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1102234 GTTGACTTAG
1102244 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1102270 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1102296 G
1 G
1102297 ATTGTACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1102951 original size:894 final size:890
Alignment explanation
Indices: 1100446--1102951 Score: 3465
Period size: 894 Copynumber: 2.8 Consensus size: 890
1100436 GTCGGTGGCT
* *
1100446 TTAGGCATACGGAGTTTATTCCCAGTCTAAGGCATACGGAGTTCATTCCAAGTATAAGATCGGAC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAA-GCATACGGAGTTCATTCC-AGTATAAGATTGGAC
* * * * * * *
1100511 TGGA-CGAGGGTTACAGCCAGTACATGCTGGGCT-GGGTATCTGCTGGTGTCACA-TTTTCTTCA
64 TGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCG
* * * * * * *
1100573 CCGGGGCACCATCGCCGGAGCATCACTGAAGAACCTGACCGGTGGCATTGAGGTTCCGGCGATCG
128 TCGGGGCACCATCG-CGGAGCATCGCCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * *
1100638 GGGGGGCGGGGGGTGTGCGCACGTGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCC
192 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCC
** * *
1100703 CCTATCCCTCATCAAACCTCAAGAACAAACACCCCATTAAAGAGCATTTAAGATTTTACAGGTTT
256 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
1100768 GCTGCCAGTAACCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
321 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * *
1100833 ACACTTCGAGTTTTTAGCTGAATTGTTCTGTGCATGGCAATAAAAATACAAGGATCACGTCTACC
386 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
*** * *
1100898 AAGTTTGGGGCCAAAACTCCCCCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAA
451 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACC-AAAAAAGTTTTGAA
* * * * * *
1100963 AATCATGAAACATAAAAAACGAGTCGTCTTCCCATGAAACTTCATGTGAAGGCTTAAGGGACCGT
515 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
**
1101028 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGTGCCTAAACCC
580 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * *
1101093 ACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTCGTGCCCGCCCG
645 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGT--TG--TGCCCG
* * * *
1101158 CCCACCCGTCCGCTTATTTCGTCGGTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
706 CCCA--C-TCCGCTCATTTCATCGGTTGCTTAGCCATACGGAGTTCATTCCCAATCTAAGATCAG
* ** *
1101223 ATCGGACGGAGGGTTCTGACAGCAAGATTGACAGCACATAGAGAGGGACCCGGCTGATCCCCGAC
768 ATCAGACAAAGGGTTCTGACAGCAAGATCGACAGCACATAGAGAGGGACCCGGCTGATCCCCGAC
* ** *
1101288 TTGGACATCGCGCCCCTTTACCCAGCTAAGTGCCTGCACGCTCGTTTCGTGGGTTGAC
833 TTGGACATCCCGCCCCTTTACCCAGCTAAGCACCTGCACGCTCATTTCGTGGGTTGAC
* * *
1101346 TTACGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTATAAGATTGGACT
* ** * *
1101411 GGACCGAAGGTTGTGGCAGCACATGCTGGGCACGGGCATGTGCTGGTGATGCATTTTTCTTCGTC
65 GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTC
1101476 GGGGCACCATCGCTGGAGCATCGCCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
130 GGGGCACCATCGC-GGAGCATCGCCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GG
* *
1101541 GGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGCTGCGGGTACTTGGCCCTTATATTGGCCCC
193 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG-TGCTGGTACTTGGCCCTTATATTGGCCCC
** * * *
1101606 CTATCCCTCATCAAACCTTGAGAAGTCAAATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
257 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
1101671 CTGCCAGTAGCCTTTAAAGTGTCTTAAATGGGGACACTCTTTTCAAATGGTCACAAAATCTTGTA
322 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* **
1101736 CACTTCAAGTTTTTAGCTGAATTTTTTT-TGGATGCCAACAAAAATACAAGGATC-TCGTCTAAT
387 CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT-GTCTACC
*
1101799 AAGTTTGGGGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCCCAAATCGAAAAAAGTTTTGA
451 AAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCAAA-CCAAAAAAGTTTTGA
1101863 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
514 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
1101928 TTGTATGACTTTACAAGCCATAAAAAAGGAATTGGCAGGCAGAAATATGAAGATGTGCCTAAACC
579 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* *
1101993 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCA-GCGTAGTGCCCGCC
644 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCAGGCGTTGTGCCCGCC
* * **
1102057 CA-TCCGCTCGTTTCATCGGTTGGCTTAGCCGTACGGAGTTCATTCCCAATCTAAGATTGGA-CT
708 CACTCCGCTCATTTCATCGGTT-GCTTAGCCATACGGAGTTCATTCCCAATCTAAGATCAGATC-
* * * ** * * * * *
1102120 AGACAAAGGGTTAC-GATAGTAGGATCGGTAGCACGTAGAGGGGGACCC-GATCGATCCCTGGC-
771 AGACAAAGGGTT-CTGACAGCAAGATCGACAGCACATAGAGAGGGACCCGGCT-GATCCCCGACT
* * * * * *
1102182 TGGCGCATCCCG-CCCTTCTAGCTAGCTGAGCACCTGTACGCTCATTTCGTTGGTTGAC
834 TGG-ACATCCCGCCCCTT-TACCCAGCTAAGCACCTGCACGCTCATTTCGTGGGTTGAC
* *
1102240 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGTACT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTATAAGATTGGACT
* *
1102305 AGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
65 GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTC
** *
1102370 ATGGCACCATCGTCGGAGCATCGCCGTAGAACCT-AGCCGACGGCATTGGGGTTCCGACGATCGG
130 GGGGCACCATCG-CGGAGCATCGCCGTAGAACCTGA-CCGGCGGCATTGGGGTTCCGACGATCGG
* * *
1102434 GGGGCCGGGGGGTGTGTGCCCATGATGTGCGATGCGTGCTGGTACTTGGCCTTTATATTGGCCCC
193 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATG-GTGCTGGTACTTGGCCCTTATATTGGCCCC
*
1102499 CTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
257 CTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
1102564 CTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
322 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
1102629 CACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
387 CACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCA
* * *
1102694 AGTTTGGGGCCAAAAATCCTTTCGAAAAAGTTTTAAAAAATCCCCAACCACAAAAAGTTTTGAAA
452 AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCA-AAAAAGTTTTGAAA
* *
1102759 ATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATT
516 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
1102824 GTATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* *
1102889 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCAGGCGTTGTACCCGCCC
646 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTTGTGCCCGCCC
1102952 GCTCGCCCGC
Statistics
Matches: 1425, Mismatches: 156, Indels: 56
0.87 0.10 0.03
Matches are distributed among these distances:
893 240 0.17
894 550 0.39
895 7 0.00
897 9 0.01
899 47 0.03
900 55 0.04
901 313 0.22
902 204 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (890 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTATAAGATTGGACTG
GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCG
GGGCACCATCGCGGAGCATCGCCGTAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
GCCGGGGGGTGTGCGCACATGATGTGCGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTT
TGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCAAACCAAAAAAGTTTTGAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTTGTGCCCGCCCACTCCGC
TCATTTCATCGGTTGCTTAGCCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGACAAAGGG
TTCTGACAGCAAGATCGACAGCACATAGAGAGGGACCCGGCTGATCCCCGACTTGGACATCCCGC
CCCTTTACCCAGCTAAGCACCTGCACGCTCATTTCGTGGGTTGAC
Found at i:1103024 original size:26 final size:26
Alignment explanation
Indices: 1102987--1103039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1102977 GTTGGCCTAG
*
1102987 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1103013 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1103039 G
1 G
1103040 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1103673 original size:749 final size:743
Alignment explanation
Indices: 1102241--1103683 Score: 2324
Period size: 749 Copynumber: 1.9 Consensus size: 743
1102231 TTGGTTGACT
* * * *
1102241 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATTGTACTA
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGTACCA
* * * * *
1102306 GACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCA
66 GACCGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTTCTTCGCCA
* *
1102371 TGGCACCATCGTCGGAGCATCGCCGTAGAACCTAGCCGACGGCATTGGGGTTCCGACGATCGGGG
131 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTAGCCGACGGCATTGGGGTTCCGACGATCGGGG
* *
1102436 GGCCGGGGGGTGTGTGCCCATGATGTGCGATGCGTGCTGGTACTTGGCCTTTATATTGGCCCCCT
196 GGCCGGGGGGGGTGTGCCCATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1102501 ATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
261 ATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
1102566 GCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
326 GCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
1102631 CTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
391 CTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAG
* * *
1102696 TTTGGGGCCAAAAATCCTTTCGAAAAAGTTTTAAAAAATCCCCAACCACAAAAAGTTTTGAAAAT
456 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCCAACCACAAAAAGTTTTGAAAAT
* *
1102761 CGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGT
521 CGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
* ** *
1102826 ATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACC
586 AAGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
1102891 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCAGGCGTTGTACCCGCCCGCTC
651 TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCAGGCGTTGTACCCGCCCGCTC
1102956 GCCCGCACACTCCTTTCGTCAGTTGGCC
716 GCCCGCACACTCCTTTCGTCAGTTGGCC
1102984 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACC
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT-AGTACC
*
1103048 AGATCGAGGGTTGC-GACAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTTCTTCGC
65 AGACCGAGGGTTGCAG-CAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTTCTTCGC
* * *
1103112 CGGGGCACCATCG-CTGGAGCATCGCCGGAGAACCT-GATCGGCGGCATTGGGGTTCCGACGATC
129 CAGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTAG-CCGACGGCATTGGGGTTCCGACGATC
*
1103175 GGGGGGGTCGGGGTGGGGGGTGTGCGCACATGATGTGCGATG-GCTGCTGGTACTTGGCCCTTAT
192 -GGGGGG-C-CGG-GGGGGGTGTGC-C-CATGATGTGCGATGCG-TGCTGGTACTTGGCCCTTAT
* * *
1103239 ATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
250 ATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
1103304 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATTGTCACAA
315 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAA
1103369 AATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCA
380 AATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCA
* **
1103434 TGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAAAT-CCCAAGCC-GTAA
445 TGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTT-AAAAAAATCCCCAA-CCACAAA
* * *
1103497 AAGTTTTGAAAATCGTGAAAAATAGAAAATGTGTCGTCTTGCCTTGAAACTTCACGTGAAGGCTT
508 AAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
1103562 AAAGGACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCACACAGAACTATGAAGATGT
573 AAAGGACCATTGTAAGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAAGATGT
*
1103627 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
638 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGC
1103684 CGGCCATAGT
Statistics
Matches: 643, Mismatches: 44, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
742 3 0.00
743 168 0.26
744 7 0.01
745 1 0.00
746 2 0.00
747 10 0.02
748 2 0.00
749 441 0.69
750 9 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (743 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATAGTACCA
GACCGAGGGTTGCAGCAGCACAAGCTGGGCTCAGGCACGTGCTAGTGCCGCATTTTTCTTCGCCA
GGGCACCATCGTCGGAGCATCGCCGGAGAACCTAGCCGACGGCATTGGGGTTCCGACGATCGGGG
GGCCGGGGGGGGTGTGCCCATGATGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
ATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
CTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAG
TTTGGGGCCAAAAATCCTTCCGAAAAAATTTAAAAAAATCCCCAACCACAAAAAGTTTTGAAAAT
CGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
AAGAATTTACAAGCCATAAAAATGCCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCAGGCGTTGTACCCGCCCGCTC
GCCCGCACACTCCTTTCGTCAGTTGGCC
Found at i:1107492 original size:26 final size:26
Alignment explanation
Indices: 1107456--1107508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1107446 GTTGACTTAG
*
1107456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1107482 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1107508 G
1 G
1107509 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1108386 original size:26 final size:26
Alignment explanation
Indices: 1108350--1108402 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1108340 GTTGACTTAG
*
1108350 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1108376 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1108402 G
1 G
1108403 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1108893 original size:901 final size:890
Alignment explanation
Indices: 1102955--1110112 Score: 8317
Period size: 901 Copynumber: 8.0 Consensus size: 890
1102945 CCCGCCCGCT
* * ** * *
1102955 CGCCCGCACACTCCTTTCGTCAGTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** * * * *
1103020 AAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACAAGCTGGGC-TCAGG
66 GAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCGGCAGCACATGCT-GGCTTCGGG
* * * * *
1103084 CACGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGA
129 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCGAGCATC-TCGGAGAACCTGA
* * *
1103149 TCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGTGGGGGGTGTGCGCACATGATGTGCG
192 CCGACGGCATTGGGGTTCCGACGATC--GGGGG-C----CGGGGGGTGTGCGCACATGATGTGCG
* *
1103214 ATGGCTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACAC
250 ATGGCTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1103279 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
315 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-G
* *
1103344 GGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTG
379 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
1103409 CATGCCAACAAAAATAAAAGGATCATGTTTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAT
444 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* * ** * * *
1103474 TTAAAAAAAATCCCAAGCCGT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAATGTGTCGTCTTG
509 TT-TAAAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * *
1103538 CCTTGAAACTTCACGTGAAGGCTTAA-AGGACCATTGTAAGAATTTACAGGCCATAAAAATGGCA
572 CCATGAAACTTCACGTGAAGGCTTAAGA-GACCATTGCATGAATTTACAAGCCATAAAAATGGCA
* *
1103602 TTGGCACACAGAACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
636 TTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1103667 CATCCCGTCTCTCTGGCCGGCCATAGTTCCG-CC-CGCCCGCCCGCTCGTTTCATCGGTTGGGCT
701 CATCCCGTCTCTCTGGCCGG-CGTAGTGCCGCCCGCGCCCGCCCGCTCGTTTCGTCGGTT-GGCT
* * **
1103730 TAGGCAATACCGGAGGTTCATTTCCCAGTCTAAGATCAGACCAGA-TAGAGGGTTACTGTAAGCC
764 TAGGC-ATA-CGGA-GTTCA-TTCCCAGTCTAAGATCAGACCGGACT--AGGGTTACGGT-AGAA
* * * * ** * *
1103794 GAATC-GCAGGGC-CGTTAGA-GAGACCCGATC-ATCCCTTGCTTG-ACA--CCTCCCCTCTGGC
822 GGATCGGCA--GCACG-CAGAGGGGA-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
*
1103852 CGGCTGA-
883 TGGCTGAG
* *
1103859 CGCCCGCACGCTCTTTTCCGTGGGTTCACTTA-GCATACGGA--TCATTCCCAGCTCTAAGCATA
1 CGCCCGCACGCTCGTTT-CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATA
* * * *
1103921 CGGAGTTCATTTCCCAG--TAAAATCGGACCGCACCGAGGG-TGC-ACAG-ACAT-CTGGCTT--
64 CGGAGTTCA-TTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCGGCAGCACATGCTGGCTTCG
* * * * * *
1103978 GGCATGTGTTTGGTGTCGCA-TTTTCGTCCCTCGGCCGGCACCATCGTTCGGCAGCATTATGCCA
127 GGCATGTG-CTGGTGCCGCATTTTTC-TTCGTCGG--GGCACCATCG-TC-G-AGCA-TCT--CG
* * * * * *
1104042 AAGAACCCTGACCGACGGCATT-GGGTTTCGACGATCGGGGGGCTC-GGGAGTGTG-TCATATGG
182 GAGAA-CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGC-CGGGGGGTGTGCGCACATGA
* * ** * * * *
1104104 TGTGCGATGGGTGCTGGTACTTGGAACTTAAATTGGCCCCCTATCCTTCATCAAACCTTGAGAAG
244 TGTGCGATGGCTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1104169 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTG
309 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
* * * *
1104234 AAATGGGGACACTTTTTTCAAATGGTCACAAAATATTATACACTTTGAGTTTTTAGCTGAATTGT
374 AAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
1104299 TTTGTGCATGGCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TACCTT-TC
438 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCT-
* **
1104362 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
501 GAAAAAATTTTAAAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * *
1104427 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAA
565 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAA
** *
1104492 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
630 ATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGG
* *
1104557 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCACGACAGCCCGCCCGCCCGCCTGCTCGTTCC
695 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--C-GCCCG--CGCCCGCCCGCTCGTTTC
* * * *
1104622 GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAGGGTTGCGG
753 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-AGGGTTACGG
** * ** * * *
1104687 CCGTAGGATCGATAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCG-ATTCTGCCCCTCT
817 TAGAAGGATCGGCAGCACGCAGA-GGGGA-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
*
1104751 GGCCGGCTGAG
880 GGCTGGCTGAG
* ** *
1104762 CGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATTTGGAGTTCATTCCCTGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * ** * * *
1104827 GAGTTCATTCCCAGTGTAAGATCAGACAAGAACGAGGGTT-CGACAGCACATGCTGGGC-TCTGG
66 GAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCGGCAGCACATGCT-GGCTTCGGG
* * * * * ** *
1104890 CATATGCTGGTGTCGTATTTTTATCCGTCGGGGCACCATCACCAGAGCAACGTCGGAGAACCTGA
129 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATC-TCGGAGAACCTGA
* * * * **
1104955 TCGGCGGCATTGGGGTTTCGACGATCGAGTGGCCGGGGGGGGTGTGCGTGCATGATGTGCGATGG
192 CCGACGGCATTGGGGTTCCGACGATCG-GGGGCC--GGGGGGTGTGCGCACATGATGTGCGAT-G
*
1105020 GC-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
253 GCTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
1105084 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGA
318 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGA
* *
1105149 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATGTTTTTGTGCAT
382 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * ***
1105214 GCCAAGAAAAATACAAGGATCATGTCTACCAAGTTTGTTCCCAAAACTTCCTT-TCGAAAAAATT
447 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCT-GAAAAAATT
* * *
1105278 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCC
510 TTAAAAAATC-CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
1105343 ATGAAACTTCACGTGAAGGCTTAAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
574 ATGAAACTTCACGTGAAGGCTTAA-GAGACCATTGCATGAATTTACAAGCCATAAAAATGGCATT
** * * *
1105408 GGCATGCAGAAATATGAAGATGTGCCTAAAACCACCTACCA-CCTATCGATCCATGGCTTGCGCA
638 GGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * *
1105472 TCCCGTATCTCTGGCCGGCGTAGTGCTC-ACC-CGCCCGCCTGCTCATTTCATCGGTTGGCTTAG
703 TCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * *
1105535 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGGACCGAGGGTTGCGATGGTAGGATCGAC
767 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GGA-CTAGGGTTACGGTAGAAGGATCGGC
* * * * * *
1105600 AGCACGTAGAGGGGGACTCGGCCGTTCCCCGGCTTGCGCATCTCGCCCCTTTGGCTGGTTGAG
830 AGCACGCAGA-GGGGAC-CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
*
1105663 CGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAG--T---C-TA--
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
1105720 -AG---------A-TC--AGAT----TGGACCGAGGGTTGTGGCACCACATGCTGGGC-TCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGATGGACCGAGGGTTGCGGCAGCACATGCT-GGCTTCGGGC
* * * * *
1105767 ATTTACTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCTTCGGAGCATCGTCAGAGAACCTGAC
130 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATC-TCGGAGAACCTGAC
* ** * *
1105832 CGACGACATTGGGGTTCCGACGATCGGGGG-CTAGGGGTATGCGCACATGATGTGCGATGGGTGC
193 CGACGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGC
1105896 TGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
258 TGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
1105961 AGGGCATTTGAGATTTTACAGGTTTGCTGCAAGTACCCATTAAAGTGTCTGAAATGGGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTT
*
1106026 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAA
387 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1106091 AAAAAATACAAAGATCACGTCTGCCAAGTTTGGGGCCAAAAATCCTTCT-AAGAAAATTTTAAAA
452 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA-AAAATTTTAAAA
* * *
1106155 AATACCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCTTGAAA
516 AAT-CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
1106220 CTTCACGTGAAGGCTTGAAG-GACCATTGTAAGAATTTACAGGCCATAAAAATGGCATTGGCACA
580 CTTCACGTGAAGGCTT-AAGAGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACA
* * *
1106284 CAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGT
644 CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
1106349 CTCTTTGGCTGGCGTAGTGCC-CGCC-CGCCCGTCCGGTTGTTTCGTCGGTTGGCTTAGGCATAC
709 CTCTCTGGCCGGCGTAGTGCCGC-CCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *
1106412 GGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGGTTGCGGTAGCAGGATCGGCCGCACG
773 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACT--AGGGTTACGGTAGAAGGATCGGCAGCACG
* * ** * *
1106476 TAGAGGCGAACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
836 CAGAGG-GGA-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* *
1106533 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * * * *
1106598 GAGTTCATTCCCAGTCTAGGATCGGACCGGATCGAGGGTTACGGCAGCTCATG-TTGCGGTCGGC
66 GAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCGGCAGCACATGCTGGC-TTCGG-
* * *
1106662 GCATGTGCTTGGTGCTGCCATTTTTCTTCATCGGGGCACCAT--T----CATC-AGGAGAACCCT
128 GCATGTGC-TGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCTCGGAGAA-CCT
* * * * *
1106720 GA-CGGCGGTATATGGTGTTCC-ACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCAA
190 GACCGACGGCAT-TGGGGTTCCGACGATC--GGGGGC-CGGGGGGTGTGCGCACATGATGTGCGA
1106783 TGAGC-GCTGGTAGTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
251 TG-GCTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
** *
1106846 GGCCTTAAAAAGCATTTGAGATTTTTACAGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAA
315 CCCCTTAAAGAGCATTTGAGA-TTTTACA-GGTTTGCTGCCAGTAGCCATTAAAGTGTCT--AAA
*
1106911 ATGGGACAC-TTTTTCAAATGGGTCACAAAATGTTGTACACTTCGAG-TTTTAGCTGAATTTTTT
376 ATGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * **
1106974 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTGCCAAGTTTGGGGTCAAAACTCCTTCTGTGA
440 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * *
1107038 CAATTTTAAAAAAATCCCAACCGTAAAAAGTTTCAAAAATCATTAAAAA-A-AAAA-GAGTCGTC
505 AAATTTT-AAAAAATCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
1107100 TTGCCTTGAAACTTCACGTGAAGGCTTAA-AGGACCATTGTAAGAATTTACAGGCCATAAAAATG
569 TTGCCATGAAACTTCACGTGAAGGCTTAAGA-GACCATTGCATGAATTTACAAGCCATAAAAATG
* * *
1107164 GCATTGGCAGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTT
633 GCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1107229 GCGCATCCTGTCTCTCTGGCCGGCGTAGTGCC-CACC-CGCCCGCCCGCTTGTTTCGTCAGTTGG
698 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGC-CCGCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** *
1107292 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-AGTGGGTTACGACAGTAGGA
762 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTA--GGGTTACGGTAGAAGGA
* * * * * * *
1107356 TCGGCAGCACGTAGAGGCAGACCCAGTCGATCCCTGGCTTACGCATCCCGCCCGTCTGGCTGGCT
825 TCGGCAGCACGCAGAGG-GGACCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCT
1107421 GAG
888 GAG
*
1107424 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
1107489 GAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATG-TGGGCTT-GGG
66 GAGTTCATTCCCAGTCTAAGATCGGAT-GGACCGAGGGTTGCGGCAGCACATGCT-GGCTTCGGG
* * *
1107552 CATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCA-C--CGT----C--CTCGGAAAACCTAACC
129 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCTCGGAGAACCTGACC
* * * *
1107608 TACGGTA-TGGGTGTTCCAATGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGA
194 GACGGCATTGGG-GTTCCGACGATC--GGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATG-
* *
1107672 G-TGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACACGCC
253 GCTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
1107736 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAATAGGA
318 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATGGGA
* * * *
1107801 CACTTTTTTCAAATGGTCACAAAATGTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTGTAT
382 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * *
1107866 GCC-ACAAAAAATACAAGGATCATGTCTAAAAAGTTTGGGGCTAAAACTCCTTCTGATAAAATTT
447 GCCAAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
*
1107930 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
511 TAAAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
1107995 TGAAACTTCACGTGATGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAACAATGGCATTGG
575 TGAAACTTCACGTGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGG
*
1108060 CTCACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
640 CACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
1108125 CTGTCTCTCTGGCCGGCGTAGTGCCTGTCCGCAGGCCCACCCGCTCGTTTCTTCGGTTGGCTTAG
705 CCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGC--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
1108190 GCATACGGAGTTCA-TCCCAAGTCTAACATCAAACTGGACTACGGGTTACGGTAGAAGGATTGGC
767 GCATACGGAGTTCATTCCC-AGTCTAAGATCAGACCGGACTA-GGGTTACGGTAGAAGGATCGGC
* *
1108254 AGCATGCAGAGCGGGACTCGACCGATCCCCGGCTTGCGCATCCCGCCCATTCTGG-TCGGCTGAG
830 AGCACGCAGAG-GGGAC-CGACCGATCCCCGGCTTGCGCATCCCGCCC-CTCTGGCT-GGCTGAG
* *
1108318 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
1108383 AAGTTCATTCCCAGTCTAAGATCGGACTAGACCGATGGTTGCGACAGCACATGCTGGTTTCGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGA-TGGACCGAGGGTTGCGGCAGCACATGCTGGCTTCGGGC
*
1108448 ATGTGCTGGTGCCGCATTTTTCTTCCTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGAC
130 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCG-AGCATC-TCGGAGAACCTGAC
* * *
1108513 CGACGGCATTGGGGTTCCGGCGATCAGGGGGCCGGGGGGTGTCCGCACATGATGGGCGATGGCTG
193 CGACGGCATTGGGGTTCCGACGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTG
* * * *
1108578 CTGGTACTTGGCCCTTATATTGG-CCTCTTTCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
257 CTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1108642 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTTAAATGGGGACACT
322 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACT
1108707 TTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
386 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
1108771 ACAAAAATACAAGGATCACGTCTACCAGGTTTGGGACCAAAAATCCTT-TCGAAAAAATTTTAAA
451 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAA
* * * * *
1108835 AAATCCTGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAGGAA
515 AAATCC-AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * **
1108900 ACTTCACGTGAAGGCTTAAGGGACCATTG-ATGAATTTACAAGCCATAAAAATGGCATTGGAATG
579 ACTTCACGTGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACA
*
1108964 CAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
644 CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
1109029 CTCTTTGGCCGACGTAGTGCCCGCCCGCCCACTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
709 CTCTCTGGCCGGCGTAGTG-CCGCCCG------CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * **
1109094 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAA-GATCGAT
767 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTAGGGTTACGGTAG-AAGGATCGGC
* *
1109158 AGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGGTGAG
830 AGCACGCAGA-GGGGA-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
* * * * *
1109221 CG--CGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* ** ** * *
1109284 GAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGCTTTATGGTAGCACATGCTGGCCTT-GGA
66 GAGTTCATTCCCAGTCTAAGATCGGAT-GGACCGAGGGTTGCGGCAGCACATGCTGG-CTTCGGG
* * * *
1109348 CATGTCCTGATGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCACCGGAGAACCTGA
129 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAGCATC-TCGGAGAACCTGA
* * ** * *
1109413 CCGGCGGCATTGGGGTTCCGGCGATCGGGGCGTTGGGCGGGGTGTGCGCACTTGATGTGTGATGG
192 CCGACGGCATTGGGGTTCCGACGATCGGGG-G-CCGG-GGGGTGTGCGCACATGATGTGCGATGG
* * * * ** * *
1109478 GTGCTCGTAATTGGCCTTTATATTGGCCCCCTATATCTCATCAAACCTCGACAACTCATACCCCC
254 CTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1109543 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
319 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGAC
* * *
1109608 ACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATG
383 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
1109673 CCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCTG-AAAAATTTTA
448 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
*
1109737 AAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
513 AAAAAT-CCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
1109802 AAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATAGCATTGGCA
577 AAACTTCACGTGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCA
** *
1109867 CGTAGATATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
642 CACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * * *
1109932 GTCTCTCTGGTTGACGTAGTGACCGCCCGTTCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAGGG
707 GTCTCTCTGGCCGGCGTAGTG-CCGCCCG--CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
1109997 ATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCTAGGGCTATGGCA-CAGGATTGGCAGC
769 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTAGGGTTACGGTAGAAGGATCGGCAGC
*
1110061 ACACAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
833 ACGCAGA-GGGGACC-GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
1110113 CGATCGAGCA
Statistics
Matches: 5467, Mismatches: 580, Indels: 418
0.85 0.09 0.06
Matches are distributed among these distances:
869 2 0.00
870 198 0.04
871 199 0.04
872 251 0.05
874 1 0.00
875 14 0.00
876 97 0.02
879 2 0.00
880 4 0.00
882 1 0.00
883 4 0.00
884 47 0.01
885 96 0.02
886 141 0.03
887 75 0.01
888 12 0.00
889 168 0.03
890 26 0.00
891 420 0.08
892 21 0.00
893 168 0.03
894 263 0.05
895 136 0.02
896 498 0.09
897 41 0.01
898 21 0.00
899 144 0.03
900 254 0.05
901 537 0.10
902 192 0.04
903 206 0.04
904 400 0.07
905 287 0.05
906 267 0.05
907 162 0.03
908 82 0.01
909 19 0.00
910 11 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (890 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATCGGATGGACCGAGGGTTGCGGCAGCACATGCTGGCTTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAGCATCTCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGG
TAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCC
AAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGAGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
ATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCGCCCGCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCGGACTAGGGTTACGGTAGAAGGATCGGCAGCACGCAGAGGGGAC
CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAG
Found at i:1109287 original size:26 final size:26
Alignment explanation
Indices: 1109251--1109303 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1109241 GTTGACTTAG
* *
1109251 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1109277 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1109303 G
1 G
1109304 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1111848 original size:26 final size:25
Alignment explanation
Indices: 1111810--1111859 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
1111800 TTTGACTTAG
1111810 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
1111835 GCATACGGAGTTCATTCCCAGTCTA
1 GCATAC-GAGTTCATTCCCAGTCTA
1111860 TGATCAGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:1112222 original size:897 final size:900
Alignment explanation
Indices: 1110136--1114380 Score: 5431
Period size: 897 Copynumber: 4.7 Consensus size: 900
1110126 CTCTTCGCTA
* * * * *
1110136 GGGCACCATCATCGGAGCATCGTCAGAGAACCTGTCCGGCGGCATTGGCGTTCCGGCGATCGGGG
1 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCTGCGGCATTGGGGTTCCGGCGATCGGGG
* * *
1110201 GGGCCG-GCGGGTGTGCGCACATGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCC
66 GGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1110265 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
131 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
1110330 CTGCCAGTAGTCATTAAAGTGTCTAAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTA
196 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * **
1110395 CACTTTGAGTTTTTTGCTGAATTTTTTTGCACATGCCAACAAAAATACAAGGATCACGTCTACCA
261 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * * **
1110460 AGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAACTCCCGAACCGCAAAAATTTTTGAAA
326 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAA
* * * * * *
1110525 ATCATGAAAAATTGAAAACGAGTCATCTTGCCATGAAACTTCACGTGATGGCTTAAGAGACCAAT
391 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
1110590 GCATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCA
456 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCA
* * *
1110655 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCAGC
521 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * ** *
1110720 CCGCCCGTCCGCTCCTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAG
586 CCTCCCGCCCGCTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * * *
1110785 ACTGGACTGAGGGTTGCGGTAGA-AGGATTGGCAGCATGTAGAGGTGG-ACCAGGCCGATCCCC-
651 ACCGAACCGAGGGTTACGGTACACAGGATCGACAGCACGCAGAGG-GGTACCCGGCCGATCCCCG
* * * * * *
1110847 AGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACACTCGTTTCGTGGGTTGACATAG
715 A-CTTACGCAT----CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
1110912 GCATACGAAGTTCATTCCTAGTGTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
775 GCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
** * * *
1110977 CGATAGTTGCGACAGCACATACTGGGCT-AGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
839 CGAGGGTTACGGCAGCACATACTGGGCTCA-GGCATGTGCTGGTGCCACATTTTTCTTCGTCG
* * * ** *
1111039 GGGCACCATCGTCGAAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTTCGATGATCAGG
1 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCTG-CGGCATTGGGGTTCCGGCGATCGGG
* *
1111103 GGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCTTTATATTGGCCC
65 GGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
1111167 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
130 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
1111232 ACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGT
195 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
1111297 ACACTTTGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAAGACAGGGATCACGTCTACC
260 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
1111362 AAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCTAA
325 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAA
**
1111427 AATCGTGAAAAATAGAAAATAAGTCGTCTTGCCATGAAACTTCACGTGAAGG-TTAAGGGACCAT
390 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * **
1111491 TATATGAATTTACAAGCCATAAAAAAGGCATTGGCACACAGAAATATGAAGATGTACCTAAACGT
455 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCC
* * * * * * * *
1111556 ACCTACCACTCTATCGATCCACGGCTTACGCATCCCATTTCTTTGGCCGACGTAGTGCCCACCTG
520 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * *
1111621 CCCATCCAGCCCGCTTATTTCGTCAGTTGGCTTAGCCATACGGAGTTCATTCCCAGCCAAAGATC
585 CCC-TCCCGCCCGCTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * **
1111686 GGATCGAACCAAGGGTTACAGTA-ATAGGATCGACAGCATGCAGAGGGGTACCCGATCGATCCCC
649 AGACCGAACCGAGGGTTACGGTACACAGGATCGACAGCACGCAGAGGGGTACCCGGCCGATCCCC
* * * * * * **
1111750 GACTTACGCAT-CCCTCTAGCCGGTTGAGTGCCTGCACGCTCATTTCGTGCTTTGACTTAGGCAT
714 GACTTACGCATCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* *
1111814 ACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCAGACCGGACCGAGG
779 ACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * *
1111879 GTTATGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCG
844 GTTACGGCAGCACATACTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
** ** * * * *
1111936 AAGCACCATCATCGGAGTGTCACCGGAGAACCTGACCTGCGACATTGGGGTTCTGACGATCGGGG
1 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCTGCGGCATTGGGGTTCCGGCGATCGGGG
1112001 GGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
66 GGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
1112066 CTATCCCTCATCAAACCTCAAGAACTCACAGCCCCTTAATGAGCATTTGAGATTTTACAGGTTTG
131 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * *
1112131 CTGCAAGTAGCCATTAAAATGTCTGAAATGGCGAC-TTTTTTTCAAATGGTCACAAAATCTTGTA
196 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
1112195 CACTTCGA-TTTTTAGCTGAATTTTTTT-TAGCATGCCAAAAAAAATACAAGGATCATGTCTACC
261 CACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
1112258 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATTCTGAA-TAGTAAAAAGTTTCGA
325 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACT-GTAAAAAGTTTCAA
1112322 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
389 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
1112387 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTACCTAATCC
454 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACC
* * * *
1112452 CAGCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCTGCGTAATGCCCGCCC
519 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
1112517 GCTCGT-CGGCCCGCTCATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
584 GC-CCTCCCGCCCGCTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * * *
1112581 CAGACCAAATCGAGGGTTA-TG-ACAGCAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCC
648 CAGACCGAACCGAGGGTTACGGTACA-CAGGATCGACAGCACGCAGAGGGGTACCCGGCCGATCC
* * * * ** *
1112644 CCGGCTTACGCATCCCACCCTTTTGGCCAGCTGACCGAACGCACGCTCGTTTCATGGGTTGAGTT
712 CCGACTTACGCAT--C-CCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * * *
1112709 AGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCGAGTCTAAGATCGGATCAG
773 AGGCATA-CGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * * *
1112774 ATCGAGGGTTACGGTAGCACTTACTAGGCTCGGGCATGGGCTGGTGTCACATTTTTCTTCGTCG
837 ACCGAGGGTTACGGCAGCACATACTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
* ** * * * *
1112838 CGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCTACGGCATTGGGGTTCCGGCGATC-GGA
1 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCTGCGGCATTGGGGTTCCGGCGATCGGGG
* * * * **
1112902 GGGCCGGAGGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTACAATATCCC
66 GGGCC-GAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
1112967 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
130 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * * *
1113032 GGTGCCAGTAGCCATTAAAGTGTCTAAAATGTGGACAATTTTTTAAAATGGTCTCAAAATCTTGT
195 GCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
1113097 ACACTTCGAGTTTTTAGCTGAACTTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACC
260 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * *
1113162 TAGTTTAGGGCTAAAATTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
325 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAA
** * * *
1113227 AATTATGAAAAATAGAAAATGGGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
390 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * **
1113292 TGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACAT
455 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCC
* * *
1113357 ACCTACCACCCCATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCG
520 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
1113422 ----CCCG-TCGCTCT-TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATC
585 CCCTCCCGCCCGCT-TATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
1113481 AGACCGGACTGAGGGTTACGGTA-GCAGAATCAACAGCACGTAGAGGGGT-CCTGGCCGATCCCT
649 AGACCGAACCGAGGGTTACGGTACACAGGATCGACAGCACGCAGAGGGGTACCCGGCCGATCCCC
* *
1113544 GATTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
714 GACTTACGCAT----CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * **
1113609 GTATACGAGTTCATTCCAAGTCTAGGCATACGGAGTTCATTCCCAGTCTAATATTGGACCAGACC
775 GCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * *
1113674 AAGGGTTAGGGCAGCACATGCTGGGCTC-GAGCACGTGCTGGTGCCACATTTTTCTTCGTCG
840 GAGGGTTACGGCAGCACATACTGGGCTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGTCG
* * * *
1113735 GGGCACCATC-TCCAGAGCATCTCCGGAGAACCTGACCAGCGGCATTAGGGTTCCGGCGATCGGG
1 GGGCACCATCAT-CGGAGCATCGCCGGAGAACCTGACCTGCGGCATTGGGGTTCCGGCGATCGGG
* *
1113799 GGCGGCCG-GGGGGTGTGCGGACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
65 GG-GGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
1113863 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTG
129 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * *
1113928 TGCTGCCAGTAGCAATTAAAGCGTCAAAAATGGGGACGCTTTTTTCAAATGGTCATAAAATCTTG
194 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
1113993 TACACTTCGAGTTTTAAGCTGAATATTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTAC
259 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
**
1114057 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTGGAA-TCGTAAAAAGTTTCA
324 CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACT-GTAAAAAGTTTCA
* ** * * * *
1114121 AAAATGGTGAAAAATAGAAAAATAGTCGTCTTGCCGTGAAACTTCAGGTGAAGGATTAAGGGACA
388 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
1114186 ATTGTATGAATTTACAA-CCATAAAAATGGCATTGGCAGGAAAAAATATGAAGATGTGCCTAAAC
453 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAAC
*
1114250 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC
518 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
** * * * *
1114315 CGTTCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
583 CGCCCTCCCGCCCGCTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1114380 C
648 C
1114381 GGATCGGATT
Statistics
Matches: 2895, Mismatches: 404, Indels: 89
0.85 0.12 0.03
Matches are distributed among these distances:
894 1 0.00
895 108 0.04
896 411 0.14
897 674 0.23
898 267 0.09
899 92 0.03
900 56 0.02
901 45 0.02
902 427 0.15
903 532 0.18
904 281 0.10
905 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (900 bp):
GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCTGCGGCATTGGGGTTCCGGCGATCGGGG
GGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CCTCCCGCCCGCTTATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGAACCGAGGGTTACGGTACACAGGATCGACAGCACGCAGAGGGGTACCCGGCCGATCCCCGA
CTTACGCATCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
TACGGCAGCACATACTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCG
Found at i:1112741 original size:26 final size:26
Alignment explanation
Indices: 1112711--1112763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1112701 GTTGAGTTAG
*
1112711 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1112737 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1112763 G
1 G
1112764 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1113639 original size:25 final size:26
Alignment explanation
Indices: 1113606--1113658 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
1113596 TGGGTTGACT
*
1113606 TAGGTATAC-GAGTTCATTCCAAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
*
1113631 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCAAGTC
1113657 TA
1 TA
1113659 ATATTGGACC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCAAGTC
Found at i:1115211 original size:26 final size:26
Alignment explanation
Indices: 1115182--1115234 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1115172 GTTGACCTAG
1115182 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
1115208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1115234 G
1 G
1115235 ATCCGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1116096 original size:26 final size:26
Alignment explanation
Indices: 1116059--1116110 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1116049 TTGACTTAGT
*
1116059 CATACGGTGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
*
1116085 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
1116111 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:1116997 original size:26 final size:26
Alignment explanation
Indices: 1116961--1117013 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1116951 GTTGACTTAG
*
1116961 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1116987 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1117013 G
1 G
1117014 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1117884 original size:26 final size:26
Alignment explanation
Indices: 1117848--1117900 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1117838 GTTGACTTAG
*
1117848 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1117874 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1117900 G
1 G
1117901 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1119681 original size:26 final size:26
Alignment explanation
Indices: 1119645--1119697 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1119635 GTTGACTTAG
*
1119645 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
*
1119671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
1119697 G
1 G
1119698 AGCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:1120916 original size:900 final size:901
Alignment explanation
Indices: 1115155--1122330 Score: 8488
Period size: 903 Copynumber: 8.1 Consensus size: 901
1115145 TCCCCGGCTT
* * * *
1115155 GCACGCTCATTTCATGGGTTGACCTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
1115220 CATTCCCAGTCTAAGATCCGACCAGACCAAGGGTGGCGACAGCACAT-GTCGGGCTCGGGCATGT
66 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATACT-GGGCTCGGGCATGT
* ** * * * * * * *
1115284 GCTGGTACCGTATTTTTCTTCGCCAGGGCACCATC-ACAGGAGCATTGTCGAAGAACCTGACCGA
130 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGG
*** * * * *
1115348 CAAAATTGGGGTTTCGATGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTACGATGGGTGCT
194 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1115413 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
259 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * ** *
1115478 GAGCATTTGAGATTTTACAAGTGTGCTGCCAGTAGCAATTAAAGCGTCAAAAATGGGGACGCTTT
324 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
1115543 TTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTAAGCTGAATATTTTTGTGCATGCCAAC
389 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
1115608 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
454 AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * * *
1115673 TCTGGAATCGTAAAAAGTTTCAAAAATGGTGAAAAATAGAAAAAGAGTCGTCTTGCCGTGAAACT
518 TCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * * *
1115738 TCAGGTGAAGGATTAAGGGACAATTGTATGAATTTACAA-CCATAAAAATGGCATTGGCAGGAAA
583 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
*
1115802 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTC
648 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * *
1115867 TCTGACCGGCGTAGTGCCCACCCGGCAGCCCGCCCGCCCGTTCATTTCATCGGTTGGCGTAGGCA
713 TCTGGCCGACGTAGTGCCC-GCC--C-GCCCGCCCGCTCGTTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
1115932 TGCGAAGTTCATTCCCAGTCTAAGATCGGA-CAGAACTAAGGGCTGCGGTAGCAGGATCGGCAGC
774 TACGGAGTTCATT-CCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGGTAGC
* ** *
1115996 ACGCAGA--GGG----GG--GA--CCCAGC---CG-ATCCC-CGGCT-T-G-C-GC--A--TCCC
837 ATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* * *
1116038 G--C-C-C--TT-GTGGGTTGACTTAGTCATACGGTGTTCATTCCCAATCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** ** **
1116096 CATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGGTAGCACATACTGGGCTCGCACATGTG
66 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGTG
* * * **
1116161 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGACTAGCG
131 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
* * * * * *
1116226 GCATTGGGGTTCCAACGATCGAGGGGGTCAGGGGGATGTGCGCTCATGATGTACGATGGGTGCTG
196 GCATTGGGGTTCCGACGATCG-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
1116291 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
1116356 AGCATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
1116421 TTCAAATGGTCACAAAACCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGTCAACA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
1116486 AAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * * *
1116551 CTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGACTTGCCATGAAACTT
519 CTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
1116616 CACGGGCATGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
*
1116681 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCT
649 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
1116746 CTAGCTGACGTAGTGCCCACCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
714 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** * ** * **
1116811 AGTTCATTCCAGTGTAAGATCGGACTGGACTGAGGGTTGCGGTAGCAGGATCGACAACACACAGA
779 AGTTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGA
* * * *
1116876 GGGGGACCCGGTCGATCCCAAGCTTGCGCATCCCACCCCTCCGGCTGGCTGAACGCCC
844 GGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* *
1116934 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
1116999 CATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGC-AGCAGCACATGCTGGGCTCGGGAATG
66 CATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGA-CAGCACATACTGGGCTCGGGCATG
* * * * * *
1117062 TGCTGGTGCTACATTTTTCTTTGCCGGGGCACCATCGTCGGAACATCGCCAGAGAACCTGACCGA
129 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* * * * *
1117127 CGGCATTGGGGTTTCGGCAATCGGGGGGGCCGGCGGGGGTGTGCGCACATGATGTGCAATGGCTG
194 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTG
** * * *
1117192 CTGGTACTTGGCCCCAATATTGGCCCCCTATCCCTCATCAAACCACAAGAATTCACACCCCCTTA
257 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * * *
1117257 AAGAGCAGTTGAGATTTTACAGGTTTCCTCCCAGTAGCCATTAAAATGTTTGAAATGGGGACACT
322 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
1117322 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCA
387 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
1117387 AAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGTCAAAA-----TCCGAAAAAATTTTAAAA
452 ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * *
1117447 AATC-CTGAACCGAAAAAAGTTTTGAAGATCATGAAAAATAGAAAACGAGTCATCTTTCCATGAA
516 AATCTC-GAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
1117511 ACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGTATG
580 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
1117576 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCTCGT
645 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
1117641 CTCTCTGG-CAAGCGTAGT--------GCCCG--C-C-CGATCATTTCGTCGGTTGGCTTAGGCA
710 CTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * *
1117693 TATGGAGTTCATTCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGCGGTGGCAAGATCGGCAGCA
774 TACGGAGTTCATTCCAGTCTAAGATCA-GACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCA
* * * * ** * * * *
1117757 TGTAGAGGGGGGCTCAGTCGATCCCTGGCTTGCACATCTCGCCCCTCTGGCTGGCTGAGCGCCC
838 TGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
*
1117821 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
1117886 CATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCCG-CAGCACATGCTGGGCTCGGGCATGT
66 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-CGACAGCACATACTGGGCTCGGGCATGT
** * * *
1117950 GCTGGTGCCGTATTTTTCTTCGTCGGGGCCCCATC-ACTGGAGCATCGCCGAAGAACCTGACCGG
130 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGG
** * ** ** *
1118014 CGAAATT-GGGTTTCGGTGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTATGATGGGTGG
194 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * *
1118078 TGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCACATCCCCTTAA
258 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * * * *
1118143 AGAGCATCTAAGATTTTACAGGTTTGCTGCCAGTAGCTACTGAAGTGTTTGGAATGGGGACACTT
323 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
1118208 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAAGCCAA
388 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
1118273 -AAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
453 CAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
1118337 AATCTCGAACGGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAA
516 AATCTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
1118402 CTTCACGTGAAGGCTTAAAGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
581 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
1118467 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCTGTC
646 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * ** *
1118532 TCACTGTCCGGCGTAGTGCCCGCCCGCCTGCCCGCCTGCCCGCCCGCTCGTTTCGTTAGTTCGCT
711 TCTCTGGCCGACGTAGTGCCCG--C-CC-G--C-CC-GCCCGCTCGTTCGTTTCGTCGGTTGGCT
* * *
1118597 TAGGCATACGGAGCTCATTCCCAGTCTAAGATTAGACCAG-CTGAGGGTTACGGCAGCAGGATCG
768 TAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * * * *
1118661 GGAGCATGTAGAGGGGGACCCAG-CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
832 GTAGCATGCAGAGGGGGACCCGGTC-GATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
1118725 GCGCCC
896 GCGCCC
* *
1118731 GCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT----AT--GAAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * ** ** *
1118790 CAATCTCAGTCTAAGATTGGATCGGATTGAGGGTTGCAGA-AGCACATACTACGCTCTGGCATGT
66 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-GACAGCACATACTGGGCTCGGGCATGT
** * * * ** *
1118854 GCTGGTGCCACATTTTTCTTCACCGAGACACCATCGTCGGAGCATCACCAAAGAACCTGACCGAC
130 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC
* * * * * *
1118919 GGCATTGAGGTTTCAACGATC-GGGGGGCCGGGGGGTGCGCGCACATGATGTGTGATGGGTGCTT
195 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
1118983 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
1119048 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTCTCTGAAATGAGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
1119113 TTCAAATGGTCACAAAATGTTGTACAATTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
1119178 AAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAAT
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * *
1119243 CTCAAACCACAAAAAGTTTTGAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCAATGAAACTT
519 CTCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
1119308 CACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
584 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
* * *
1119373 AATATGATGATGAGCCT-AACCGCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCTC
649 AATATGAAGATGTGCCTAAACC-CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* ** * * ** * * *
1119437 TCTGGTCGGGGTAAT----GCCCGCCCACCAACAC--T--TTTCGTCTGTAGGCTTAGGCATACG
713 TCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** *
1119494 GAGTTCATTCCCAGTCTAAGATCGGA-CAGGACTGAGGGTTATGGCAGCAGCATCGGTAGCATGC
778 GAGTTCATT-CCAGTCTAAGATCAGACCA-GACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGC
* * * * * *
1119558 AGAGGGGTACCCGGCCGATCCCCGGCTTGTGCATCCC-GCCCTCTGGCCGGTTGAGCGCCC
841 AGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* *
1119618 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAATCCTAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
1119683 CATTCCCAGTCTAAGAGCGGATTGGACCGAGGGTTGCGATAGCACATACTGGGCTCGGGCATGTG
66 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGTG
* * *
1119748 CTGGTGCCGCATTTTTCTTCGTCGGGG---CA----C--A--ATTGCCAGAGAACCTGACCGGCG
131 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
*
1119802 GCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
196 GCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
1119867 GTACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
260 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
1119932 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
325 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
1119997 TTCAAATGGTGACAAAATCTTGTACAGTGCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
390 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
1120062 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACGCCTTCCGAAAAAATTTCAAAAAATC
455 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
1120127 CCAAACCGTAAAATGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
520 TCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
1120192 ACGTGAAGGCTTAAGGGACCATAGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAA
585 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * * *
1120257 ATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCTTCTATC
650 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* *
1120322 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTCGTTTCATCGGTTGGCTCAGGCATACGGA
715 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *** * *
1120387 GTTCAATCCGAGTTTAAGATTAGACCAGACTAAGGGTTGCAATAGTAGGATCGGTAGCACGCAGA
780 GTTCATTCC-AGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGA
*** * **
1120452 GGGGGACCCGGTCGATCCCCAGCTTGCATGTCCCACCCCTCTGGCCGGTTGAATGCCC
844 GGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
*
1120510 GCTCGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * ** *
1120575 CATTCCTAG-CTAGGATCGGATCAGACCGAGGGTTACGATAGCACATGTTGGGCTCAGGCATGTG
66 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGTG
* ** * *
1120639 CTAGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCA
131 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
** *
1120704 GCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGG-GTACGCACATGATGTGCGATGGGTGCTGG
196 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
1120768 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACCCCCCCTTAAAGA
261 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
1120833 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACACTTTTT
326 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
1120898 CCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AA
391 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * *
1120962 AAACTACAAGGATCACGTCTAAAAAGTTTGGGGCAAAACACCTTCCGAAAAAATTTCAAAAAATC
456 AAA-TACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * * *
1121027 ACGAACCGCAAAATGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
520 TCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* **
1121092 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAA
585 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
* * **
1121157 ATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTTCGCATCCTATCTCTC
650 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
1121222 TGGCCAACGTAGTGCCCGTCCGCCCGCCC-TTCCGCTTCG-TTCGTCGGTTGGCTTAGGTATACA
715 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT-CG-TTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
1121285 GAATTCATTCCAATTTTAAGATCAGACCAGACCAGATCGAGGTTTGTGGCAGCAAGATCGGTAGC
778 GAGTTCATTCC-AGTCTAAGATCAGACCAGA-C---T-GAGGGTTGCGGCAGCAGGATCGGTAGC
* * * * * *
1121350 ATACAGAGGGAGACCCGGTCGATCCCCAGCTTGCGCATCCCTCCCCTTTGGCCGACTGAGCGCTC
837 ATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
* ** *
1121415 GCACGCTTGTTTTAAT-GGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C--AG-
1 GCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
*
1121474 --A----C---C----A----A----ACCGAGGGTTCCGACAGCACATACTGGGCTCGGGCATGT
65 TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGT
* * *
1121518 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTCACCGGT
130 GCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGC
*
1121583 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTG
195 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
1121648 GTACTTGGCCCTTATATGGGCCCCCCTATCCCTCATCAAACCTTTGAGAACTCACCACCCCCTTA
260 GTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACC-TCGAGAACTCA-CACCCCCTTA
* * *
1121713 AAGAGCATTTGAGA-TTTACA-GTTTGCTGCCAATAGCCATTGAAGTATCTGAAATGGGGACACT
322 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
1121776 GTTTTCAAGTGGTCACAAGAATCTTGGTACACTTCGATGTTTTTGGGCTGAA--TTTTTATGCAT
387 TTTTTCAAATGGTCACAA-AATCTT-GTACACTTCGA-GTTTTT-AGCTGAATTTTTTTGTGCA-
* * * * *
1121839 TGCCAACAAAATTACAAGGATCAACGTCCAACCAAGTTTTGGGCCAAAACCCCTTCCG-AAAATT
447 TGCCAACAAAAATACAAGGATC-ACGT-CTACCAAG-TTTGGGGCAAAACTCCTTCCGAAAAAAT
** *
1121903 TTTAAAAAATCTCGAA-CATAAAAAGTTTCAAAAATCGTTGAAAAATAGAAAACGAGTCGTCTTG
509 TTTAAAAAATCTCGAACCGCAAAAAGTTTCGAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTG
1121967 CCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAAAT-GCA
573 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCA
*
1122030 TTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGGCTTGC
637 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTGC
* * * *
1122095 GCATCCCGTCTCTCTAGCAGATGTAATG-CCGCCCG-CCG---G--C--TCGTTTCGTCGGTT-G
701 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTCGTTTCGTCGGTTGG
*
1122150 CTTA-G-ATAC--AG-TC-TTCCCA-TCTAAGAT--GACCA-A-T-AGGG-T--GGTAGCAGG-T
766 CTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * **
1122199 GGGTAACA-CCA-A----G--CC-GT-GGTCACCAGCTTGCG-A-CCGGCCCCTCTGGACC-GCT
830 CGGTAGCATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGG-CCGGCT
1122251 GAGCGCCCC
894 GAGCG-CCC
1122260 GCAACGCTCGTTT-GTGGGTTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
1 GC-ACGCTCGTTTCGTGGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
1122323 TTCATTCC
64 TTCATTCC
1122331 TTTAAATCGA
Statistics
Matches: 5463, Mismatches: 666, Indels: 355
0.84 0.10 0.05
Matches are distributed among these distances:
844 18 0.00
845 41 0.01
846 26 0.00
847 3 0.00
848 2 0.00
849 2 0.00
850 1 0.00
852 1 0.00
854 1 0.00
855 2 0.00
856 7 0.00
857 7 0.00
859 1 0.00
860 3 0.00
862 1 0.00
867 1 0.00
868 5 0.00
870 7 0.00
871 3 0.00
872 4 0.00
873 48 0.01
874 45 0.01
875 8 0.00
876 165 0.03
877 379 0.07
878 110 0.02
879 3 0.00
880 127 0.02
881 48 0.01
882 110 0.02
883 247 0.05
884 303 0.06
885 253 0.05
886 146 0.03
887 542 0.10
888 87 0.02
889 4 0.00
890 208 0.04
891 179 0.03
892 99 0.02
893 80 0.01
894 3 0.00
895 1 0.00
896 6 0.00
897 1 0.00
898 5 0.00
899 210 0.04
900 525 0.10
901 13 0.00
902 60 0.01
903 620 0.11
904 369 0.07
905 131 0.02
906 7 0.00
908 1 0.00
909 2 0.00
910 163 0.03
911 18 0.00
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATACTGGGCTCGGGCATGTG
CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAAATCT
CGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGG
GGGACCCGGTCGATCCCCAGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
Found at i:1122824 original size:26 final size:26
Alignment explanation
Indices: 1122794--1122846 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1122784 GTTGACTTAG
1122794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1122820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1122846 G
1 G
1122847 ACCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1123727 original size:26 final size:26
Alignment explanation
Indices: 1123697--1123749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1123687 GTTGACTTAG
1123697 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1123723 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1123749 G
1 G
1123750 ACCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1124371 original size:903 final size:899
Alignment explanation
Indices: 1122605--1127786 Score: 6817
Period size: 903 Copynumber: 5.8 Consensus size: 899
1122595 TGGGAACTCG
* * *
1122605 CCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCACTCTAAGATCAGACC
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** * * * * * * *
1122670 GGACCAAGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGAGCCGGCTGATCCTCGGCTTG
66 GGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
** *
1122735 CGCATCCCACCCCTCTGGGTGGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
131 CGCATCCCACCCCTCTGGCCGG-TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
1122800 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCAGACCAGACCAAGGG
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACC-GACCAGACCAAGGG
* * *
1122865 TTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACAAT
259 TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
*
1122930 CG-CAAGAGCATCTCCAGG-GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGAGCCAG
324 CGTC-AGAGCATCTCC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCAG
*
1122993 GGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
1123058 CATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGT
451 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
1123123 AGCCATTAAAGTGGCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
516 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
1123188 GTTTTTAGTTGAATTTTTTTGTGCATGCCAAGAAAAATAAAAGGATCACGTTTACCAAGTTTGGG
581 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGG
** * * ** *
1123253 GATAAAAAGCCTTCCGAAAAAATTTTAACAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
646 GCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
* *
1123318 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAAT
711 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAAT
* *
1123383 TTACAAGCCATTAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
776 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
1123448 CCTATCAATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCC
841 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * *
1123507 ACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTACTAGTCTAACATCAGAC
1 -CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
1123572 TGGACCGAGGGTTGTGGCAGTAGGATTGGCAGCACGGAGAGGGGGACCCGATCGATCC-CTGGCG
65 CGGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTC-GGCT
* * *
1123636 TACGCATCCCACCCCTCTGGCTGGTAGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCAT
129 TGCGCATCCCACCCCTCTGGCCGGT-GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
*
1123701 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGACCAGACCAGACCAAG
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACC-GACCAGACCAAG
* * *
1123766 GGTTACGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACA
257 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
*
1123831 ATCG-CAAGAGCATCTCCAGG-GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGAGCC
322 ATCGTC-AGAGCATCTCC-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCC
*
1123894 AGGGGGTGTGCGGACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
384 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
1123959 CTCATCATACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
449 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
1124024 GTAGCAATTAAAGTGTCTGAAATGGTGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTC
514 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
1124089 GAGTTTTTAGCTGAATTTTTTTTTGCATGCCACCAAAAATGCAAGGATCACGTCTAAC-AAGTTT
579 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACGAAGTTT
* * * * * **
1124153 GGGGCCAAAAATCCTTCCGAAAAAATTTCAAAAAATCTCGAACTGCAAAGAGTTTCAAAAATCGT
643 GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGT
* * *
1124218 GAAAAATAGAAAATGGGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATAGTATG
708 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATG
* *
1124283 AATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
773 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
1124348 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCC
838 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * * * * * *
1124410 GCCCGCTCGTTCAGTTTCATCGGTTGGCTCAGGCATACGGTGTTCAATCCGAGTTTAAGATTAGA
1 -CCCGCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* ** * * ** ** *
1124475 CCAGACTGAGGGTTGCGATAGTAGGATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCT
64 CCGGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCT
* * * *
1124540 TGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCTCGCTCGTTTCGTGGGTTAACTTAGGCAT
129 TGCGCATCCCACCCCTCTGGCCG-GTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* * * * **
1124605 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG-CTAGGATCGCATCAAACTGAG
193 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCG-ACCAGACCAAG
* * *
1124669 GGTTACGACAGCACATGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
257 GGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * ** *
1124734 ATCGTCGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGCCGGG
322 ATCGTCAGAGCATCTCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGG
1124799 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
387 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
1124864 ATCAAACCTCAAGAACTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
452 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
1124929 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTAT-GA
517 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGA
* * * *
1124993 GTTTTTAGCTGAATTTTTTCGTGCATGCCAA-AAAGAGTACAAGGATCATGTCTACGAAGTTTCG
581 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACGAAGTTTGG
* * *
1125057 GGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCTAACCGTAAAAAGTTTTGAAAATTGTGA
645 GGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGA
* *
1125122 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA-ATTTATGA
710 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATA-GTATGA
* * *
1125186 ATTTACAAGCCATCAAAACGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
774 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * *
1125251 ACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCTCGCCCG---
839 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * *
1125309 CCCGCCCGCTCGTTTCGTCCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACT
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
1125374 GAACTGAGGTTTGTGGCTGCAGGATTGGCAGCATGTAGAGAGGGACCCGACCGATCCCCGGCTTG
66 GGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
* * * * *
1125439 CGCATCTCACCCCTCTGGCTGTCTGAGCGCCCGCACGCTCGTTTCGTGGATTGACTTAGGCATAC
131 CGCATCCCACCCCTCTGGCCG-GTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
*
1125504 GGAGTTCATTCCCAG--T---C-TA---AG---ATT----G-----GACCG----GACCGAGGGT
195 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCGACCAGACCAAGGGT
* * * **
1125544 TGCTGCAGCACATGCTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATC
260 TACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * *
1125609 GTCGGAGCATCACCGGAGAACCTGATCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGTG
325 GTCAGAGCATCTCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCAGG-G
*
1125674 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCA
388 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
1125739 TCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
453 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
1125804 CCATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTGT-GAG
518 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAG
* *
1125868 TTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTGGGG
582 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGG
* * * *
1125933 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAATCGTAAAAAGTTTTGAAAATCATGAAA
647 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAA
1125998 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATT
712 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATT
* * * *
1126063 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAGGATGTACCTAAACCCACCTACCAAC
777 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
1126128 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG---
842 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
1126183 CCCGCCCCCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAGACA
1 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * *
1126248 GGACTGAGGGTTGC-G--GC---A---GCA-CA--CAGAGGGGGATCTGACCAATCCTCGGCTTG
66 GGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
* * * *
1126301 TGCATCCCGCCCCTCTGGCCAGCG-GAGCGCCCGCACACTCGTTTCATGGGTGGACTTAGGCATA
131 CGCATCCCACCCCTCTGGCC-G-GTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * *
1126365 CGGAGTTCATTCCCAGTCTAAGCATACGGAG-TAATTCCCAGTCTAAGATCGGACCGGACCGAGG
194 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-CCGACCAGACCAAGG
* * * * ** * *
1126429 GTTACGGCATCACATGCTGGGCTCGGACAAGTGCTGGGGTAGCATTTTTCTTCGCCAGGGCACCA
258 GTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * *
1126494 TCGCCGGAGCATCGCCGTAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGG
323 TCGTCAGAGCATCTCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-AG
*
1126559 GGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
386 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
1126624 CATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGT
451 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
1126689 AGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGA
516 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * * *
1126754 GTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGGCTACCAAGTTTGGG
581 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGG
* * * * *
1126819 GCCAAAACTCCTACCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAACTTTTGAAAATCGTGAA
646 GCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAA
*
1126884 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAAT
711 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAAT
* *
1126948 TTACAAGCCATAAAAATGGCATTGTCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
776 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
1127013 CCTATCGATCCACGGGTTACGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCTCGCCC
841 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * *
1127072 ACCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
1 -CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * *
1127137 CGAACTGAGGGTTGCGGCAGCATGATTGGTAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTT
65 CGGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTT
* * *
1127202 -CGCATCCCGCCCTTACTGGCCGGTTGAGCGCCCGCACACTCATTTTGTGTTTTAACTTAGGCAT
130 GCGCATCCCACCCCT-CTGGCCGG-TGAGCGCCCGCACGCTC-------G---T---TT---CAT
* * * *
1127266 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTC
177 ---GGGTTGA----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
1127331 CTAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
232 CCAGTCTAAGA-CCGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
*** * * * * *
1127396 GTAACATTTTTCTTCGTCAGGGCACCTTTGTCAGACCATCGT-CGGAGAACCTGACCGGCGGCAT
296 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATC-TCCGGAGAACCTGACCGACGGCAT
* * * * **
1127460 TGGGGTTTCGAAGATCGGGGGG-CA-----TGTGCACACATGATGTGTGATGGGTGCTCTTACTT
360 TGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
1127519 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCTCTTAAAGAGCATT
425 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
1127584 TGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGT-TCGGAATGGGGACACTTTTTTTAA
490 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAA
* * * *
1127648 ATGGTCACAAAATCTTGCACACTACGAGTTTTTAACTGAA-ATTTTTGTGCATGCCAACAAAAAA
554 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC-AAAAA
* * * *
1127712 TACAAGGATCACGTCTTCGAAGTTTGGGACCAAAAATCCTTTCGAAAAAGTTTTAAAAAATCCCG
618 TACAAGGATCACGTCTACGAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCG
*
1127777 AACCGCAAAA
683 AACCGTAAAA
1127787 TGNNNNNNNN
Statistics
Matches: 3803, Mismatches: 381, Indels: 172
0.87 0.09 0.04
Matches are distributed among these distances:
862 92 0.02
863 1 0.00
864 3 0.00
865 3 0.00
867 1 0.00
868 3 0.00
871 4 0.00
872 112 0.03
873 15 0.00
874 542 0.14
875 4 0.00
877 5 0.00
881 1 0.00
882 2 0.00
883 2 0.00
885 3 0.00
886 130 0.03
887 466 0.12
888 5 0.00
890 71 0.02
891 3 0.00
892 1 0.00
893 2 0.00
895 1 0.00
896 1 0.00
897 167 0.04
898 9 0.00
899 2 0.00
900 3 0.00
901 19 0.00
902 516 0.14
903 961 0.25
904 194 0.05
905 2 0.00
909 1 0.00
912 1 0.00
915 2 0.00
918 3 0.00
920 16 0.00
921 257 0.07
925 1 0.00
927 2 0.00
928 40 0.01
929 134 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
CGCATCCCACCCCTCTGGCCGGTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGACCGACCAGACCAAGGGTT
ACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
TCAGAGCATCTCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAA
AAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATAGTATGAATTTACA
AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
Found at i:1126407 original size:25 final size:26
Alignment explanation
Indices: 1126360--1126411 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
1126350 GTGGACTTAG
*
1126360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
1126386 GCATACGGAG-TAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
1126411 G
1 G
1126412 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:1127298 original size:26 final size:26
Alignment explanation
Indices: 1127262--1127340 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
1127252 TTTAACTTAG
1127262 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1127288 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1127314 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1127340 G
1 G
1127341 ATCGGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1129210 original size:26 final size:26
Alignment explanation
Indices: 1129181--1129233 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1129171 TTTGACTTAG
1129181 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1129207 GCATATGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1129233 G
1 G
1129234 ATAGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1130102 original size:26 final size:26
Alignment explanation
Indices: 1130073--1130125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1130063 GTTGACTTAG
*
1130073 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1130099 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1130125 G
1 G
1130126 ATCGGTCCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1130855 original size:26 final size:26
Alignment explanation
Indices: 1130819--1130871 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1130809 GTTGATGTAG
1130819 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
1130845 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1130871 G
1 G
1130872 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1130918 original size:746 final size:736
Alignment explanation
Indices: 1129713--1131189 Score: 2015
Period size: 746 Copynumber: 2.0 Consensus size: 736
1129703 ACGAGTCGTG
*
1129713 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1129778 CATTGGCATGAAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
66 CATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTG
* * * *
1129843 CGCATCCTATCTCTCTGGCCTGCGTAGTGCCCACCTGCCGACCCGCTCGCTCGTTTCGTCGGTTG
131 CGCATCCCATCCCTCTGGCCTGCGTAGTGCCCACCTGCCCACCCGCCCGCTCGTTTCGTCGGTTG
* * * *
1129908 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCATATTGAGGGTTACAGTAGCAGGA
196 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAAGGTTACAGTAGCAGGA
* * * *
1129973 TCGGTAGCACACAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCTGGCT
261 TCGGCAGCACACAGAGGGGGACCCGACCGAACCCCGACTTACGCATCCCGCCCCTCTGGCCGACT
* ** * *
1130038 CAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCAT
326 CAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCAT
* * *
1130103 ACGGAGTTCATTCTCAGTCTAAGATCGGTCCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCG
391 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCG
* * * * * *
1130168 GGCATGTGCTGGTG-CTCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATTACCGGAGAACCT
456 GGCATGTGATAGTGCCGCA--TTTC-TC-T------AC-A-C--CAGAGCATCACCGAAGAACCT
*
1130232 GAACGACGACATTGGGGATCC-GACGATCGGGGCGGCCAGGGGGTGTGCGCACAGGATGTGC-GA
507 GAACGACGACATTGGGGATCCAG-CGATCGGGG-GGCCAGGGGGTGTGCGCACAGGATGTGCAAA
1130295 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CC-C-TCAAACCTCGAGAACTCACACC
570 T-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1130357 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGG
634 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGGG
1130422 GACACTTTTTTCAAATGGTCACAAAATCTTGTAAAGGC
699 GACACTTTTTTCAAATGGTCACAAAATCTTGTAAAGGC
* *
1130460 TTGCCATGTAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1130525 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTG
66 CATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTG
* ** *
1130590 CGCATCCCGTCCCTCTGGCC-GACGTAGTGCCC-GTTCGCCCACCCGCCCGCTTGTTTCGTCGGT
131 CGCATCCCATCCCTCTGGCCTG-CGTAGTGCCCACCT-GCCCACCCGCCCGCTCGTTTCGTCGGT
* * * *
1130653 TGG-TTAGGCATACAGAGTTCATTCCCTA-TCTAAGATCAGACCAGACTGAAGGTTGCGGTTGCA
194 TGGCTTAGGCATACAGAGTTCATTCCC-AGTCTAAGATCAAACCAGACTGAAGGTTACAGTAGCA
* * ** * * * *
1130716 GGATTGGCAGCATGA-AGAGGGGGACCCGGTCGAACCCCGGCTTGCGCATCCCGCTCCTTTGGCC
258 GGATCGGCAGCA-CACAGAGGGGGACCCGACCGAACCCCGACTTACGCATCCCGCCCCTCTGGCC
* *
1130780 GACTGAGCGCCCACACGCTCGTTTCGTGGGTTGA-TGTAGGCATACGGAGTTCATTCCCAGCCTA
322 GACTCAGCGCCCACACGCTCGTTTCATGGGTTGACT-TAGGCATACGGAGTTCATTCCCAGCCTA
* ** * *
1130844 AGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCATATGCTAG
386 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAG
* * * ** *
1130909 GCTCGGGCATGTGATAGTGCCGCATTTCTCTTCACCAGAGCATCGCCGAAGAACCTGACCGGTGG
451 GCTCGGGCATGTGATAGTGCCGCATTTCTCTACACCAGAGCATCACCGAAGAACCTGAACGACGA
* * * * *
1130974 CATTTGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCATATGATGTGCAAATGGTGCTGGTA
516 CATTGGGGATCCAGCGATCGGGGGGCCAGGGGGTGTGCGCACAGGATGTGCAAATGGTGCTGGTA
*
1131039 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGC
581 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGC
* *
1131104 ATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTTTC
646 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGGGGACACTTTTTTC
1131169 AAATGGTCACAAAATCTTGTA
711 AAATGGTCACAAAATCTTGTA
1131190 CACTTCGAGT
Statistics
Matches: 646, Mismatches: 73, Indels: 34
0.86 0.10 0.05
Matches are distributed among these distances:
732 60 0.09
733 45 0.07
734 2 0.00
735 116 0.18
736 1 0.00
737 1 0.00
743 1 0.00
744 2 0.00
745 5 0.01
746 231 0.36
747 182 0.28
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (736 bp):
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACAGCTTG
CGCATCCCATCCCTCTGGCCTGCGTAGTGCCCACCTGCCCACCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAAGGTTACAGTAGCAGGA
TCGGCAGCACACAGAGGGGGACCCGACCGAACCCCGACTTACGCATCCCGCCCCTCTGGCCGACT
CAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCG
GGCATGTGATAGTGCCGCATTTCTCTACACCAGAGCATCACCGAAGAACCTGAACGACGACATTG
GGGATCCAGCGATCGGGGGGCCAGGGGGTGTGCGCACAGGATGTGCAAATGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTG
AGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTAAAGGC
Found at i:1131850 original size:26 final size:26
Alignment explanation
Indices: 1131814--1131866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1131804 TTTGACTTAG
1131814 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1131840 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1131866 G
1 G
1131867 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1132734 original size:26 final size:26
Alignment explanation
Indices: 1132705--1132757 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1132695 GTTGACTTAG
*
1132705 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
1132731 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1132757 G
1 G
1132758 ATCGGTCCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1133487 original size:26 final size:26
Alignment explanation
Indices: 1133451--1133503 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1133441 GTTGACGTAG
1133451 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
1133477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1133503 G
1 G
1133504 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1134817 original size:901 final size:900
Alignment explanation
Indices: 1133091--1172294 Score: 38347
Period size: 901 Copynumber: 43.9 Consensus size: 900
1133081 CTTGTAAAGG
* *
1133091 CTTGCCATGTAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1133156 GCATTGGCGCGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * *
1133221 GCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCG-CTCGCCCACCCGCCCGCTTGTTTCATCGGT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
1133285 TGGC-TAGGCATACAGAGTTCATTCCCTGTCTAAGATCAGACCAGACTGAAGGTTGCGGCAGCAG
195 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAGCAG
* * * * * * *
1133349 GATTGGCAGCATG-AGGAGGGGGACCCGGTCGAACCACGGCTTACGCATCCCGCTCCTTTGGCCG
259 GATCGGCAGCACGCA-GAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
1133413 ACTGAGCCCCCACACGCTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGCCTAAG
323 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * *
1133478 CATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGTAGCATATGCTAGGC
388 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
1133543 TCGGGCATGTGATAGTGCCACA--TTTC-TCTTC---G--CCA------GAGCATCGCCGAAGAA
453 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * *
1133594 CCTGACCTGTGGCATT-TGGTTCC-AGCGATCGGGGGGCCGGGGGGTGTGTGCATATGATGTGCA
518 CCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC-
* * *
1133657 AAT-GGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1133721 CCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
646 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1133786 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTCAGCTGAATTTTTTTGT
711 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
1133851 GCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAA
776 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAA
* * ** *
1133915 TTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGC
840 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1133976 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCAAAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
1134041 GCATTGGCACATAGAAATATGAGGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1134106 GCGCATCCCGTCTCTCTGGCCGGCGTTGTGCCTGCCTGCCCGCCCGCCCACTCCTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
1134171 GGCTTAGTCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACGAAGGGTTACAGTACCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACG-AGGGTTGCGGTAGCAGG
* * * * * ** * **
1134236 ATCGACAGCACGTAGAAGGGGACCCGGGCGATCCCCAGCTTGCGCATCCCATCCCTCTAGTTGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
1134301 TGAGCGCCCGCACGCTCGTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** * *
1134366 TACAAAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGACAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
1134431 GGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * *
1134496 TGACCGGCTGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACACATGACGTGCGATG
520 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
** * *
1134561 GGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCCCATCAAACCTTGAGAACTCACACCCC
585 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
1134626 CTTAAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGGGGA
650 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
1134691 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAAGTGTTTAGCTGAATTTTTTTGTGCA
715 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCA
* * *
1134755 TGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTATCGAAAAATTTT
779 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTT
* * * * * *
1134820 TAAAAAATCCCGAAACATAAAAAGTTTCATAAATCATGAAAAATAAAAAACGAGCCGT
843 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1134878 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * * *
1134943 GCATTAGCACATAGAAATATGAAGATGTGACTAAACCCACCTACCACGCTACCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1135008 CCGCATCCTGTCTCTCTGGCCGACGTA------G--T----GCCAGCCCGCTCGTTTCGTCGATT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
1135061 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCATG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * *
1135126 ATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCTGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
1135191 TGAGCGCCCGTAAGCTTGTTTAGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
** * * **
1135256 TACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACAACAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
1135321 AGGCATGTGCTGGTGCCGTATTTTTC-T--TC---G------C--CGAAGCATCGTCGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
** * * *
1135372 TGACCGATGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACAAGATGTGCGA
520 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
1135437 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1135502 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
1135567 GACACGTTTTTCCAATGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTATGC
713 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
1135632 ATGCCAACAAAAATACAAGGACCATGTCTA--ATAGTTTGGGGCCAAAACTCCTTCCAAAAGGAT
778 ATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCGAAAA-AAT
* * ** * **
1135695 TTTAAAAAATCCCAAACCGTAAAAAGTTT-TGAAATCATAAAAAATAGAAAACGAGTTTT
841 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * **
1135754 CTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAACA
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1135819 GTATTGGCACGCAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * ** * *
1135884 GCGCATCCCATCTCTCTGGCCGGCATAGTGCCTGCCCGGCCGTCTACCCGCTCATTTCGTTGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * *
1135949 GGCTTAGGCATACAGACTTCATTCCCAGTCTAAGATCAGATCAGACTGAGGGTTGTGGCAGCAAG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAGCAGG
* * * * * *
1136014 ATCGGCAGCACGTAGAGGGGGACCCGATCGAACCCCGGCATGCGCATCCTGCCCCTCTGGCCGAC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1136079 TGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTAATTCCCAGTCTAAG-A
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
1136143 T-C-G-G---------A--CT-AGAT-----C-G--C--GGGTTGTGACAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * *
1136183 GGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGCCACCACCGTTGGAGCATCGCCAGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * * ** * * *
1136248 TGATCGGTGGCATTTGGCTTACGGGGATCAGAGGGGCC-GGGGGTGTGCGTACAAGATGTGCGAT
520 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
1136312 GGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCAAGAACTCACACCC
584 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
1136377 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
649 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
1136442 ACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCA
714 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
1136507 TGCCAACAAAAATACAAGGATCACATCTA--ATAGTTTGGGGCCAAAAATCCTTGCAAAAAAATT
779 TGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTT-CGAAAAAATT
* * * * * *
1136570 ATAAAAAATCCCGAACCGCAAAAAGTTTTC-AAAATCGTGGAAAATAGAAAACGGGTCGT
842 TTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1136629 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1136694 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1136759 GCGCATCCTGTCTCTCTGGCCAGCGTAGTG--C-CC-GCCCTCCCGCACGTTCGTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
1136820 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAACGGTTGCGGTACCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* ** * *
1136885 ATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATTCCGCCTCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
1136950 TGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
1137015 TACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
1137080 GGGCATGTGCTGGTGCTGCATTTTTCTTC-CCTGGGGCACCATCGTCGGAGCATCGCCGAAGAAC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * *
1137144 ATGATCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGAGGGGGTGTGCGCACATGATGTG
519 CTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--G-GGGGGTGTGCGCACATGATGTG
* * **
1137209 CGATGGTTGCTGGTGCTTGGCCCTTATATTTACCCCCTATCCCTCATCAAACCTCGAGAACTCAC
580 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1137274 GCCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
645 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1137339 GGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTC-ATGTTTTTAACTGAATTTTTTT
710 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTT
* * * * * *
1137403 ATGCATGCCTATAAAAATACAAGGATCACGTTTACCAAATTTGGGACCAAAACTCCTTCCGAAAA
774 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* * * **
1137468 AATTTTTAAAAATCTCAAACCGTAAAATGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
838 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1137531 CTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1137596 GCATTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1137661 GCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGACC-GCCCGTCCGCCCGCTCGTTTCGTCGGT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
1137725 TTGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCCGACCGAATCGAGGGTTGTGATAGCAG
195 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAG
* * ** * * * ** *
1137790 GATCGACAGTATACAGAGGGGTACTCGGCCGATCTGCAGCTTGCGCATCCCGCCCCTCTGGCCGG
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *
1137855 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * ** * * *
1137920 ATGCGGAGTTCATTCCAAGTCTAAGATCGAACTGGACTGTGGGTTGCGGCAGTACATGCTGGGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * * *
1137985 CGGGCAAGTGTTGGTACCGTATTTTTTTTC-ACTGGGGCACCATCTTCGGAGCATCACCGGAGAA
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * *
1138049 CCTGATCGACGGCATTGGGGTTCCGACGATCGGGAGGGCCGGGGGGCGTGCGCAAATGATGTGCG
518 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCG
*
1138114 ACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-TCCCTCATCAAACCTCGAGAACTCACAC
582 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1138178 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGGAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1138243 GGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1138307 CATGCCAACAAAAATACAAGGATCATGTCTA-CAA-TATCTGGGGCCAAAAATCTTTTCGAAAAA
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGT-T-TGGGGCCAAAACTC-CTTCGAAAAA
*
1138370 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
839 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1138432 CTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * **
1138497 GCATTGGCACACAGAAATAAGAAGATGTACCTGAACACACCTACCACCCTATCGTTCCATTGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * *
1138562 TAGCATCCCGTCTCTCTGGCCGACGTA------G--TGCCCACCCGCCCGCTCGTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
1138619 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGATCGAATCGAGGGTTGCGGCAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
** * * * * * * * * *
1138684 ATCAACAGTACGTAGAGAGGGACCTGGTCGATCCCCAGCTTGTGCATCCCACCCCTTTGGCCAGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1138749 TGAGCACCTGCATGCTCATTT--T--G-TG-----GG--T-C-GA--T--TT---AG-----GCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
1138788 TATGGAGTTCACTCCCAGTCTAAGATCGGACCAGACAGAGGGTTACGGTAGCACATGCTGGGCAC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * ** * *
1138853 GAGCATGTGCTAGTGCCGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGTCGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * *
1138918 TGACCAGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGAT
520 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
** *
1138983 GGGTGCTGGTACTTGGCATTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
584 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
1139048 CCTTAAAGAGCATTTGAGATTTTATAGGGTTGCTGCCTGTAGCCATTAAAGTGTCCGAAATGGGG
649 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
1139113 ACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATATTTTTGTGCA
714 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
1139178 TGCCAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
779 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTT
* * * * **
1139243 TAAAAAATCCCGAACAGGAAAAAGTTTCAAACATTGTGAAAAATAGAAAACGAGTCGT
843 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * ** *
1139301 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGTGAGAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
1139366 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1139431 GCGCATCCCGTCTCTCTGGCCGGCGAAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCATCGATT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
1139492 GGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATC-GAATCAGACCGAGGGTTGCGGCAGCAG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-CGAGGGTTGCGGTAGCAG
* * * * * *
1139556 GATCGACAGCACGTAGAGGGGGACACGGTCGATCCCCGGTTTGCGCATCCCGTCGCTCTGGCCGG
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1139621 CTGAGCACCTGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCACTCCCAGTCTAAG-
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
1139685 AT-C-G-G---A---CC---C---GAT----------TGAGGGTTGTGGCAGCACATGCTGGGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
1139725 CGGGCATGTGCTGGTGCCACATTTTTGTTTGTCGCGGCACCATCG-C----CA------GAGAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * ** *
1139779 TTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGCCCGGAGGGCGTGTGCGCACATAATGTGC
519 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGG-GGG-GTGTGCGCACATGATGTGC
* * * *
1139844 GATGGGTGCTGGTACTTGGCCCTCATATTGGTCCCCTATCCCTCATTAAACAGT-GAGAACTCAC
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-CTCGAGAACTCAC
*
1139908 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAAT
645 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1139973 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTT
710 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * * *
1140038 TGCTTGCCAAAAAAAATACAAGGATCTTGTCTACCAAGGTTGGGACCAAAACTCCTTTCGAAGAA
775 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* **
1140103 ATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGT
839 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1140165 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1140230 GCATGGGCATGCAGAAATATGAAGATGTCCCTAATCCCACTTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1140295 GCGCATCCCATCTCTCTGGCCAGCGTA------G--T----GCCAGCCCGCTCATTTCATTGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * **
1140348 CGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTATGGTAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * *
1140413 ATTGACAGCACACA-ACGGGGGTCCCGGTCGATCCCTGGCTTGTGCATCCCGCCCC-CTTGGCCA
260 ATCGGCAGCACGCAGA-GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCCG
* * *
1140476 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCACTCCCAATCTAAG
323 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
1140541 CATGCAGAGTTCGTTCCCAGTCTAAGATTGGACTAGATCGAGGGTTACGGCAGCACATGCTGGGC
388 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * * * *
1140606 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGAGGCACCATCATCGGAGCATCGTCAGAGAA
453 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * ** * * *
1140671 CCTGACCGACGACATTGGGGTTCTGGTGATCGGGGGGGTCAGGGGCGGTATGCGCACAAGATGTG
518 CCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGG-GGTGTGCGCACATGATGTG
*
1140736 CGATGAGG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
580 CGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1140800 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCT-AAA
644 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1140864 GTGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAGACTTTGAGTTTCTAGCTGAAATTTTT
709 -TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTT
* * * *
1140929 TT-TGCATGCAAAAAAAAATACAAGGATTACGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAA
772 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAA
* * * * * * *
1140993 GAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCGTAAAAAATAGAAAACGAGTCAT
836 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1141058 CTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1141123 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACTACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1141188 GCACATCCCGTCTCTCTGGCCGACGTA------G--T----GCCAGACCGCTCGTTTCATCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * ** * * * ** * *
1141241 GGCTTACGCATACAAAATTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTACGACAGTAGA
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * ** * *
1141306 ATCGACAGCACGCAGTA-GGGGACCCGGCCGATCCCCGGGTTGTTCA-CCCTACCCCTCTGGCCA
260 ATCGGCAGCACGCAG-AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC-GCCCCTCTGGCCG
* * * * * *
1141369 GCTGTGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
323 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
1141434 CATATGGAGTTCATTCCAAGCCTAGGATCGGAGCCAGACCGAGGGTTACGGCAGCACATGCTAGG
388 CATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *** * *
1141499 CTCAGGCATGTGCTGGTGCAATATTTTTCTTCGTC-GGGCACCATCGTCAGAGCATCGTCGGAGA
452 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * * *
1141563 ACCTGACCGACGGCATTGGAGTTCTGAAGATCGGGGGGGCCAGGGGGT-T-CTCGCAT-A--T--
517 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1141621 GA----TG-TGGTACTTGGCCTTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACA
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1141681 CCCCCTTAAAAAGCAATTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
646 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
1141746 GGGACACTTTTTTCAAATGGTCGCAAAATCTTCTACACTTCGGGTTTTTACCTGAATTTTTTTGT
711 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1141811 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAGAAA
776 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAA-AAA
* * **
1141875 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATA-AAAACGAGTCGT
840 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1141935 CTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATA
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1142000 CCATGGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATTGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1142065 GCGCTTCCCGTCTCTCTGGCCGGCGTAGTACCCGCCT----GCCTGCCCGCTCGTTTCATCTGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * * *
1142126 GGCTTAGACATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAAGGTTGTGGCAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAGCAGG
* * *
1142191 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCACCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1142256 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTACGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
1142321 TACCGAGTTCATTCCCAGTCTAAGATTGGACCAGGCTGAGGGTTGCGGTAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
** * * *
1142386 GGGCATGTGCTGGTGTTGCATTTTTCTTCGTCAGGGCACCATCGTTGGAGCATCACCGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* ** * * * * **
1142451 TGACCGGCGGCATTAGGGTTTTGATGATCGGGGGGGCCGGAGGGTTTGCGCACAGGATGTATGAT
520 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
1142516 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCC
584 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * **
1142581 CCTTAAACAGCATTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCAAAAATGGGG
649 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
1142646 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTTTGTGCA
714 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
1142711 TGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGCGGCCAAAAATCCTTCCAAAAAAATTT
779 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTT
1142776 TAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
843 TAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1142834 TTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
1142899 GCATTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * * *
1142964 GCGCATCCCGTCTCTCTGGCCAACGTACTGCCCGCCCGCCC-CCCGCACGCTTGTTTCATCAGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * *
1143028 GGCTTAGGCGTATGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGCTGCGGCAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * *
1143093 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCACACCCCTCTAGCTGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1143158 TGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCAGACAGAGTTCATTCCCAGTCTAAG--
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
1143221 --C--A--T-A----C-G---AAG-T-------GACCGAGGGTTGTGGTAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* ** *
1143263 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCTGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * *
1143328 TGACCGACGGCATTGGGGTTCTGGCGAT--------CGGGGGGTGTGCACACATGATGTGCGATG
520 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * * * *
1143385 GGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCTCTCATCAAACTTTGAGAACTCACATCCC
585 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
1143450 CTTAAAGAGCTTTTG-GATTTTACA-GTGTTGCTGCCAAG-AGGCCATTTAAAATGTGCTGAAAT
650 CTTAAAGAGCATTTGAGATTTTACAGGT-TTGCTGCC-AGTA-GCCA-TTAAAGTGT-CTGAAAT
* **
1143512 -TGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTGGGGCTGGAATTTTTT
710 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCT-GAATTTTTT
* * * * *
1143576 TGTGTAGGCCAAAAAAAATACAGGGATCACGGTCTACCAAGTTTGGGGGCCAAAACTCCTACCGA
773 TGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTT-GGGGCCAAAACTCCT-TCGA
** * * * ** *
1143641 AAAAGGTTTAAAAAATCCCAAACCGTAAAAAGTTT-GAAAATCGGGAAAAATAGAAAATGAGTCG
835 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-
1143705 GAT
899 G-T
* *
1143708 -TTGCCGTGAAACTT-ACGTGGGAAGG-TTAAAGGGAACCATTGTTATGAAATTTACAAGTTCAT
1 CTTGCCATGAAACTTCACGT--GAAGGCTT-AAGGG-ACCATTG-TATG-AATTTACAAG-CCA-
* * * * *
1143770 TAAAAAATCGGCATTGGCACACAGAAATATTGATTGGTCGTACCTAAAACCAAGCCTACCACCCT
58 T-AAAAAT-GGCATTGGCACGCAGAAATA-TGA-AGAT-GTGCCT-AAACCCA-CCTACCACCCT
* * *
1143835 ATTCGAATCCACGGCTTG-GCATATCTCGT-TGCTCTGGCCGGGCGTAATGCCCGGCC-GCTCGC
116 A-TCG-ATCCACGGCTTGCGC--ATCCCGTCT-CTCTGGCC-GGCGTAGTGCCC-GCCTGCCCGC
* * * *
1143897 CCGCTCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCG
174 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * ** *
1143962 GACCAACGGTTGCGGTACCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGTTTGC
239 GA-CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * * * *
1144027 GCATTCCGCCTCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
303 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* *
1144092 GAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCA
368 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A----C-
** *
1144157 GTCTAAGATTGGATCGGACCGAGGGTTGTTGCAGCACATGCTGGGCTCGGGCGTGTGCTGGTGCC
421 --C---------A---GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * ** *
1144222 ACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTTGGAGAACCTGACAGGCGGCATTGGG
472 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* * * * *
1144287 GTTCCAACGAT-----TG--GAGGGGTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCT
537 GTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
1144345 CTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAG
602 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
1144410 ATTTTACAGGTTTGCTGCCAATACCCATTAAAGTGTCTGATATGGGGACATTTTTTTCAAATGGT
667 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
1144475 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAAATACA
732 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC--AACAAAAATACA
* *
1144540 AGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATATTAAAAAATCTCGAATC
795 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACC
*
1144604 GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
859 GTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1144646 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1144711 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1144776 GCGGATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCGCTCGTTTCATCAGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** *
1144841 GGCTTAGGTATACAGAGTTCATTCCCAATCTAAGATCAGATCGGACTGAGCTTTGTGGTAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAGCAGG
* * * * * * *
1144906 ATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCTTCCTGCCCCTCTGGCTGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
1144971 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * * *
1145036 TCCGGAGTTTATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTACGACAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* ** * * *
1145101 GGGCATGTGCTGGTGCCGCATTTTTCATCGTCGGGGCACCATCACCAGAGCATCACCGGGGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * *
1145166 TGACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCCAAGGGGGTGTGCGCAAATGATTTGCGA
520 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCGA
* * * *
1145231 TGGGTGCTGGTACTTGGTCCTTATCTTGGCCCCCGATCCCTCATCAAACCTCGAGAACTCATACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
1145296 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* **
1145361 GACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTAA
713 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * * * * *
1145426 ATGCCAAGAAAAATACAAGGATCACATCTAGCAAATTTGGGGTCGAAACTCATTTTGAAAAAATA
778 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCGAAAAAATT
* * *
1145491 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGT
842 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
1145550 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATTTGAATTTACAAGCGATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1145615 GCATTGGCATGCAGAAATAAGAAGATGTACATAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * *
1145680 ATGTATCCCGTCTTTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCCCGCTTGTTTCGTCGATT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * **
1145741 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTAGTAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * * * *
1145806 ATCGGCAGCACACTGAGGGGAACCC-GACGATCCTCGACTTGCGCCATCTCGCCCCTCTAGCCTG
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGG
* * * * * *
1145870 CTAAGTGCCCGCACGCTTCGTTTTGTGGGTTGACTTAGGCATACAGATTTCGTTCCCAGTCTAAG
324 CTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** * *
1145935 CATACGGAGTTCATTCTCAGTCTAAGATCGGGCCGGATAGAGGGTTACGACAGCACATGCTGGGC
388 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* *
1146000 TCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCAGGGG---CA----C----CATCGCCGGAGA
453 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
1146054 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGAGTGGGCCGGGGGGTGTGCGGACATGATGTGC
517 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1146119 GATGGGTGCTGGTAGTTTGCCCTTATATTGG-CCCCTTTCCCTCATCAAACCTCGAGAACTCACA
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1146183 CCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTTAAGTGTCTGAAATG
646 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1146248 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
711 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1146313 GCATGCCAACAAAAATACAAGGATCACGTGTACCAACTTTGGGG---------C-T-G-------
776 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAT
*
1146360 ------AAA--T----CC--------TTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
841 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
1146400 CTTACCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCTATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * **
1146465 GCATTGGCACGTAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAATGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
1146530 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT----GCCCGACCGCTCGTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** * * **
1146591 GGCTTAGGCATAAGGAGTTCATTCCCAATCTAAGATTGGACTGGATCGAGGGTTGTGACAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * *** * * *
1146656 A-CGGCAGCACGTAGAGGGGGTCCCAACCGATCCTCGGCTTACGCACCCCGCCCCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1146720 TGAGCACCCGTACGCTTGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * ** * ***
1146785 TACGAAGTTCATTCCCAGTCTATGATCGGACCGGATTGAGGGCTGCGTTGGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
1146850 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * * *
1146915 TGACCAGCGACGTTGGGGTTCCGGCGATTGGGGGGCCCGGGGGGTGTGCGCATATGATGTGCGAT
520 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
1146980 GGGTGCTGGTACTTGGCCCTTATATTAGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCC
584 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
1147045 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATGGGG
649 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
1147110 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGTGCA
714 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
1147174 TTCCAACAGAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCCGAAAAAATTT
779 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTT
* *
1147239 GAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
843 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1147297 CTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1147362 GCATTGGCACACAGAAATATGAAGATGTGCCTAAATCCACCGACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1147427 GTGCGTCCCGTCTCTCTGGCCGACATAGTGCCCGTCTGCCCGCCCGTCCGCTCGTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
1147492 GGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATCAGACCGGATGAAGGGTTACGGTAGTAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACG-AGGGTTGCGGTAGCAGG
** * * ** * * *
1147557 ATCTACAGCATGCAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATTCCC-TCCCTCTGGCAGG
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA-TCCCGCCCCTCTGGCCGG
* *
1147621 CTGAGCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * ** *
1147686 ATACAGAGTTCATTCCTAGTCTAAGATCGAACCAGACCGAGGGTTATGACAGCACATGCTGGGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** * *
1147751 CGAGCATGTGCTGGTGCTGCATTTTTCTTCGCCAAGGCACCCTCGTCGGAGCATCGTCGGAGAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * *
1147816 CTGACCGACGACATTGGGGTTCTGGCGATCGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCA
519 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CC-GGGGGGTGTGCGCACATGATGTGCG
* * *
1147881 ATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACAG
582 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1147946 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1148011 GGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTGAATTTTTTTGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * ** *
1148076 AAAGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGTTCAAAAACTCCTTCCGAAAAAAT
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
** *
1148141 TTTAAAAAAT-TCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
841 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1148200 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1148265 GCATTGGCAGGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * * * *
1148330 GCGCATCCCGTCTCTCTGGCCGACGTAGCGGCCGCCCACCTGCCCGCCCGTTCATTTTGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
1148395 GGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * ** * * * * * * *
1148460 ATCGGTAGCACGCATAGGGGGACCCGACCGATTCTCGACTTGTGCATGCCGCCCCTCTGCCCGAC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
1148525 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG--T----A
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
1148584 TA---AG---A-T--C-G-----GAT-----CAGACCGAGGGTTACGGTAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* *
1148629 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG---CA-C-T---ATCAT---CGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * * ***
1148683 TGATCGACGGCATTGGGGTTCCAACGATCGGAGGGCCAGGGGGTGTGCGCACATGATGCATGATG
520 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
1148748 GGTGCCGGTACTT-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGACCCC
585 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
1148812 CTTAAAGAGCATTTGAGATTTTATAGGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
650 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
1148876 CACTTTTTTCAAATGGTCACAAAATCGTGTACACTTTGAGTTTTTAGGTGAATTTTTTTTTACAT
715 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * *
1148941 GCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGAACAAAACTCCATCCGAAAAAATTTG
780 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTT
* * * * *
1149006 AAAAAATCCCAAACCGTAAACAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGT
844 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
1149063 CTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCACAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1149128 GCATTGGCATGTAGAAATATGAAGATATGCCGAAACCCACCTACCACCCTATCGATCCACGACTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * *
1149193 GCGCATCCCGTCTCTCTGGCCGACGTTGTGCCCCCCCGCCTGTCCGCCCACTCATTTCATCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
1149258 GGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGAT-GGAACCGGACCGAGGGTTGTGGCAGCAG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-CGAGGGTTGCGGTAGCAG
* * ** * *
1149322 GATCGACAGTACGCAGAGGCAGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGG
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1149387 CTGAACGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAATCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * * * *
1149452 ATGCAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGAGACAGCACTTGTTGGGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
1149517 CGGGCATTTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * *
1149582 CTGACCTGCGGCATTGGGGTTTCC-ACGATCGAGGGGCCGGGGGGTGTACGCACATGATGTGTGA
519 CTGACCGGCGGCATTGGGG-TTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1149646 TGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
1149711 CCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAATGTCTGAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
1149776 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGC
713 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1149841 ATGCCAA-AAAGAATACAAGGATTAGGTCTACCAAG-TTGGGCCCAAAACTCCTTCCGAAAAAAT
778 ATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
* * * * *
1149904 TTTAAAAAATC-CTGAACAGTAAAAAGTCTCAAAACTTATAAAAAATAGAAAACGAGTCGT
841 TTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1149964 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1150029 GCATTGGCACGTAGAAATATGAAGATGTCCCTAAACCCAGCTACCACCCAATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *** * * * *
1150094 GCGCATCTCGTCTCTCTGGCCGACGTAATGCCCGCCCATCGGCCCGCCCGCTCATTACGTCGATT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
1150159 GGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGCAGA
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* ** * * * * *
1150224 ATTGGCAGCACATAGAGAGGGACCCAGTCGATCCCCGGCTTACGCATTCCACCCCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1150289 TGAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * *
1150354 TACGAAGTTCATTCCCAGTCTAAGATCGGATTAGATCGAGGGTTGCGGCAGCAC-TAGCTGGACT
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT-GCTGGGCT
* ** * * * **
1150418 CGGGCATGTGCTGGTGCCGCATTTTTTTTCACCGGTGCTCTATCGTCGGAGCATCGCCAAAGAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
** * *
1150483 CTGACCTACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGGTCTGCGCACATGATGTGCGAT
519 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
1150548 GGGTGCTGGTACTTGGCCCATATCATAT--CCCCCTATCCCTCATCAAACTTTGAGAACTCACAC
584 GGGTGCTGGTACTTGGCCCTTAT-AT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
1150611 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
1150676 GGACAATTTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
1150741 CATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTAGGGCCAAAACTCATTTTGAAAAAAT
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCGAAAAAAT
* * *
1150806 TTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA-ATGAAAAGGAGTCGT
841 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-GAAAACGAGTCGT
1150866 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* **
1150931 GCATTGGCACGCACAAATATGAAGATGTGCC-AAACGTACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1150995 GCGCATCCCGTCTCTTTGGTCGGCGTAGTG--C-TC-GCCCGCCCGCCCGTTCGTTTAGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
1151056 GGCCTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGTGTTGCAGTAGTAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * ** *
1151121 ATCGGCAACACGCAAAGGGGGACCTAGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1151186 TGAGCTCCCGTACGCTCGTTTCATGGGTTGACTTAGGCGTAC-GAGTTCATTCCCAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
1151250 TACGGGGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTGTGACAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
1151315 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCCGGGCACCATC-TCCAGAGTATCACCGGAGAAC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGGAGCATCGCCGGAGAAC
* * * *
1151379 CTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGCCGGGGCGGTGTGCGCACATGATGTGTGA
519 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGA
* *
1151444 TGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
1151509 CCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTATCTGAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
1151574 GACA-TTTGTTTCAAATGGTTACAAAATCTTGCACACTTCGAGTTTTTAGATGAATTTTTTTGTG
713 GACACTTT-TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
1151638 CATGCCAAAAAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
777 CATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
* * ** * *
1151703 TTTTAAAAAATC-CTAAATCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAAAACGAGTCGT
840 TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1151764 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1151829 GCATTGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * * *
1151894 ACGCGTCCCGTCTCTCTGGCCGACGTTGTGCCCCCCCGCCTGTCCGCCCACTCATTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * * * *
1151959 GCCTTAAGCATATGGAGTTCATTCCCAGTCTAAGACCGGACCGAACCAAGGGTTGTGGCAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * *
1152024 ATCAGCAACACGCAGAGGGGGACCCGGCCGATCCTCGGCTTACGCATCCCACCCCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1152089 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTGATTCCCAATCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * ** * * * * *
1152154 TACAGAGTTCATTCCCAGTCTAAGATTGGATTAGACCCAAGGTTGAGGCAGCACTTGCTAGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * **
1152219 GGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTTGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * * *
1152284 TGACAGGCGGCATTGGCGTTCCGGCGATCGAGGGGGCCGAGGGGGTGTGCGCCCATGATGTACAA
520 TGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGA
* * *
1152349 TGGGTGCTGGTA-TTGGGCCTTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACAC
583 TGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1152413 CCCCTTAAAGAGCATTTAAGAATTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1152478 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCAGAATATTTTTGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * * * *
1152543 TATTTCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCGAAAACTTCTTCCGAAAAAA-
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
* ** * * * *
1152607 TTTAAAAAACTCCCGAACCACAAAAAGTTTCGAAAATCATAAAAAATGGAAAATGAGTCGT
841 TTTAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1152668 CTTGCCATGAAACTTCGCGAGAAGGCTTAAGGGACC---------A-TT----G---T-AAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1152715 GCATTGGCATGCAAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1152780 GCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGTCCGCCTGCTCGTTTCGTCGATT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
** * * * *
1152841 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAATCGAGGGTGGCAGTGGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * * *
1152906 ATTGGCAGTATGCAGAGGGGGACTCGGTCGATCCCCGGCTTGCACATCCTGCCCTTCTGGCCAGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
1152971 TGAGCGCTCGCACGCTCCTTTCGTGGGTTGAC-TAGGCGTACGCAATTCCATTCCCAGTCTAAGC
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT-CATTCCCAGTCTAAGC
* ** * *
1153035 ATACCAGAG-TCATTTCCCAGTCTAAGATC-GACTGGACCGGAGGGTTGTGGCAGCACATGTTGG
389 ATA-CGGAGTTCA-TTCCCAGTCTAAGATCGGACCAGACC-GAGGGTTGCGGCAGCACATGCTGG
* * **
1153098 GCTCGGGCATAGTGTTGGTGCCACCATTTTTCTTCACCGGGGCACCA---T-----CA---CCGG
451 GCTCGGGCAT-GTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGG
* * *
1153152 -GAACACTGA-CGGCGGCATTAGGGTTCCGGCGATCAGGGGGGGCTGGGTGGCCGGTGTGCGCAC
514 AGAAC-CTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGGC-CGG-GG--GGTGTGCGCAC
* * *
1153215 ATGATGTGCAATGGGTGCTGGTATTTGGCCCTTATGTTGGCCCCCTATCCCTCATC-AACCTCGA
572 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
1153279 GAACTTCCACACCCCCTTAAA-AGCATTTGAGATTTTACAGCGTTTGTTGCCAGTAGCCATT-AA
637 GAAC-T-CACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTTTGCTGCCAGTAGCCATTAAA
1153342 GTGTCTTGAAATGGGGACACTTTTTTCAAATGCGTC-CACAAATCCTTGTACACTTCGAGTTTTT
699 GTGTC-TGAAATGGGGACACTTTTTTCAAATG-GTCACA-AAAT-CTTGTACACTTCGAGTTTTT
* * * *
1153406 AG-TAGAAATATTTTT-TGCATGCCAACAAAAACACAAGGATCACTTCTGCCAAGTTTGGGGCCA
760 AGCT-G-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
**
1153469 AAACTCCTTCCGAAAAAATTTTAAAAAATCAT-GAACCGTAAAAAGTTTTGAAAATCATGAAAAA
823 AAACTCCTT-CGAAAAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
*
1153533 TAGAAAACAAGTCGT
886 TAGAAAACGAGTCGT
*
1153548 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1153613 GCATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTAATCGATCCACGGCT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCT
* * * *
1153677 TGCGCATCCCGTCTTTCTGGCCGACGTAGTACCCG--T------CCG--C-C-CATTTCGTCGGT
130 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * ** * *
1153730 TGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCGGATCGGATTATGGGTTACAGTAGCAG
195 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGA-GGGTTGCGGTAGCAG
* ** * * *
1153795 GATCGGTAGCACATAGAGGGGGACCCGGTCGATCCCCTGCTTGCGTATCCCGCCCCTCTGGCCGA
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
1153860 CTGACCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
1153925 ATACGGAGTTCATTCCCAATCTAAGATCTGACCGGAGCGAGGGTTGCGACAGCACATGCTGGGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
1153990 CGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCGGGCCACCATCGTCGGAGCATCGCCGGAGAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* *
1154055 CTGACCGGCGACAGTGGGGTTCC-AGCGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
519 CTGACCGGCGGCATTGGGGTTCCGA-CGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
1154119 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACA
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1154184 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
646 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1154249 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGATGAATTTTTTTGT
711 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
1154314 GCATGCCATA-AAAAATACAAGGACCACGTCTACCAAG-TTGGGGCCAAAAATCCTTTTGAAAAG
776 GCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAA
* * * *
1154377 ATTTTAAAAAATCTTGAATCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
839 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1154439 CTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAA-TT--------T----A--
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1154489 -CA---G--C-C----ATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGACTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * *
1154543 GCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCT--------GTTCGCTCGTTTCATCAGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * ** ** *
1154600 GGCTTAGGCATACAGAGTTCTTTTCCAGTCTAA-ATTTTGACCAAACTGAGGGTTGTGGTAGCAG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGAC-GAGGGTTGCGGTAGCAG
* * * *
1154664 GATCGGCAGCACGCAGAGGGGGACCCAGTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGA
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
** * *
1154729 CTGAGCGCCCATACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * ** *
1154794 ATACGGAGTTCATTTCCAGTCTAAGATCGGATCGGATCGAGGGTTACGGCAGCACATGCTATGCC
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
** * * * * *
1154859 CGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGTAAAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * *
1154924 TTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
519 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
1154989 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCTCTCATCAAACCTCGAGAACTCACACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
1155054 CCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * **
1155118 GACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGCCC
713 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
1155183 ATGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACCCCTTCCAAAAAAATT
778 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATT
* *
1155248 TTAAAAAATCCCG-ACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGT
842 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1155306 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1155371 GAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** *
1155436 GCGCATCCCGTCTCCCTGGTCGGCGTAGTGCCC-ATTCGCCTGCCCGCCCGCTCGTTTCGTCGGT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCT-GCCCGCCCGCCCGCTCGTTTCGTCGGT
* * ** * * *
1155500 TGGCTTAGGCATATGGAGTTCA-TCCTAGTCTAAGATCAGATTGGATCAAGGGTTGCAGCAGCAG
195 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAG
* * * *
1155564 GATCGGCAGCACGCAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGA
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** * * * * * *
1155629 CTGAGTGCAAGCACGTTTGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTGCAATTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * ** * * *
1155694 ATACAGAGTTCATTTCGAGTCTAAGATCAGACTGGACC-AAGGTTGTGGCAGCGCATGCTGGGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
1155758 CGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * *
1155823 CTGACCGGTGGCACTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGTACATGATGTGCG
519 CTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCG
* *
1155888 ATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
582 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1155953 CCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-----AGTGTCTCAAATGC
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1156013 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
1156078 CATGCCAA-AAACAATACAAGGATCACCTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
777 CATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAA
* * ** * ** *
1156142 TTTAAAAAAAT-TCCAAACCACAGAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
840 TTTTAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1156203 CTCGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1156268 CCAGTGGCATGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
1156333 GCGCATCCCGTCTCTCTGGCAGGCGTAGTG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** * ** * *
1156394 GGCTTAGGCATACGGAGTTCATACCCAATCTAAGATTGGATCAAACTAAGGGTTGCAGTCAGCAG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGT-AGCAG
* * * * * *
1156459 GATCGACAGTATGCAGAGGGGGACCCGGACGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGG
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * * *
1156524 TTGAGCGCCCGCACGTTCTTTTCATCGGTTGAGTTAGGCATATGGAGTTCATT--C---C----C
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** *
1156580 ATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGAATGAGGTTTGCGGCAGCACATGCTGGGC
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * *
1156644 TCGGGCATATGCTGGTGCTGTATTTTTCTCCGTCGGGGCACCATCGTCGAAGCATCACTGGAGAA
453 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
1156709 CCTGACCGGTGGCATTGGGGTTCCGACGAT--------C--AGGGTGTGCGCGCATGATGTGCGA
518 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1156764 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
1156829 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
648 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
1156894 GACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATGTTTTTGTCC
713 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1156959 ATGCCAACAAAAATACAAGGATCACATCTAACAA-TTTAGGGCCAAAACTCCTTCCGAAAAAATT
778 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATT
* * * * *
1157023 TTAAAAAATCCCAAACCGCAAAAAGTTTC-AAAATCATGAAAAATAGAAAATGAGTCAT
842 TTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1157081 CTTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1157146 GCATTGGCAAGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1157211 GCGCATCCTGTCTCTCTAGCCGGCGTAGTGGCCGCAGCTCTGGCCGGCTGAGCACCCGCACGCTC
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCC-C-GC-CT-GCC--C---G--CCCGCCCGCTC
* * * * * * ****
1157276 ATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG--CATA-CGGA-GTTCATT
184 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTT
** * * * * ** * * ** *
1157337 -C-CCAGTCTAAGATTGGACCGGACG-A-AGGGTTA--C-GAC-ATCACATGC-TGGGC-T--CG
249 GCGGTAG-C-AGGATCGG-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG
** * * * * * ** *
1157390 -GGC-AT-G--TGCTG-GTG-CCGTA---T-TTTTC-T---TTG-CCGAGGCACAATCGCCGGAG
311 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG--C-AT--ACGGAG
* ** * * * *** * ** *
1157439 CGTCA-TCGGAG---AA-CCTGACCGACG-ACATT-GGGGTTCCGAAGATCGG--GGGACCGGGG
371 -TTCATTCCCAGTCTAAGCAT-ACGGA-GTTCATTCCCAG-T-CTAAGATCGGACCAGACC--GA
* * * * * * * *
1157495 GGGTGTGC-GC-GCATGATG-TGCGATGGGTGC-TGGTACTTG-GCC-C--TTAT-AT--T--GG
429 GGGT-TGCGGCAGCA-CATGCTGGGCTCGG-GCAT-GTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * * * * * ** * **
1157547 CCCCCTATCCCTC--ATCAAAC-CTC-AAGAA-CTCA-CAGC--CACTTAAGG---AG-C-ATTT
490 GCACC-AT-CGTCGGAGC-ATCGC-CGGAGAACCTGACCGGCGGCA-TTGGGGTTCCGACGATCG
* ******** * * * ** * * * *
1157599 GAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCATTAAAGTGTCT-GAAATGGGGACACCTTTTT
550 GGGGGCCGGGGGGTGTGC-GCACATGATGTGCGA-T-GGGTG-CTGGTACT-TGG-C-CC-TTAT
* * *** ** * ** *** * ***** ** * *
1157659 CAAATGGTCACAAAAT--CTTGT-ATAGTTCGAGTTTTTAGCTAAATTGTTTTA-TGCATGTGAA
607 --ATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCA-C-ACCCCCTTAAAGAGCATTTG-A
*** * * * * * * *
1157720 GAAAAATACAAGTATCAGGTCTACCAAGTTTTGGGCCA--AAACGCCT-TC-CAAA-----AAAA
666 G-ATTTTACAGGT-T--TG-CTGCC-AG---T-AGCCATTAAA-G--TGTCTGAAATGGGGACAC
*** ** ** * * ** * **** ** ** *
1157776 TTTTAAAAAAT-CCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAGAAGTCGTCTT
718 TTTTTTCAAATGGTC--A---CAAAATCTTGTACACTTCGAG-TTTTTAG--CTGAA-TTTTTTT
* * ** * * * ** *** *
1157840 GT-CATG-AAACTACACGTGAAGGCTTAAGGGACCA-TTGTATGAA-TTTACAAGCCAAAAAAAT
774 GTGCATGCCAAC-A-A---AAATAC--AA-GGATCACGTCTACCAAGTTT-GGGGCC--AAAACT
* * * * * * * * ** ** * *
1157901 GACATTGGCACGTAGAAA-TAT-GAAGATGT-G--CC-TAAACCCA-CCT-ACCACTCTATCAAT
828 --CCTT----CGAAAAAATTTTAAAAAATCTCGAACCGTAAA--AAGTTTCAAAAATC-ATGAA-
* ** * **
1157958 ACACGACTTGCGCATCCCGTC-T
883 A-A--A-TAG-AAAACGAGTCGT
* * ** * *** ** * * * *
1157980 CTCTGGCC--G--GCGT-A-GTGCCCGCCTGCCCGCCCACCCATTTCGTTTCATCAGTTAGCTTA
1 CT-T-GCCATGAAACTTCACGTG-AAGGCT-TAAG-GGA-CCA-TT-GTATGA--ATTTA-C-AA
* ** * ** *** *
1158039 GGCATACGAA-GTTCATTCCCA-GTCTAAGATCGAACCGGACAGAGGGTTGCGGC-AGCAGGATC
54 GCCATAAAAATG-GCATTGGCACG-C--AGA---AATATGA-AGA-TG-TGC--CTA--A--A-C
* ** ** * * * * * * *
1158101 GGTAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGTCGGC---
102 ----CCA--CCTA---CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* * * * * *
1158163 -TG--AG--T----GCCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
158 GTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
1158219 GTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA
223 GTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * *
1158284 TCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCGTTTCGTGGG
287 TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * * **
1158349 CTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAAACAAAGTTCATTCCCAGTCTAAGATC
352 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * *
1158414 GGACCGGACCGAGGGTTATGGTAGCACATGCGGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
417 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * **
1158479 TCGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCTGTGGCATTAAGGTTCCGACGA
482 TCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * * * *
1158544 TCGGGGGCCCGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTAGTACATGGCCCTTATATTGG
547 TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
1158609 ----------C-C--C---CCT-----A-T------CCCTTAAAGAGCATTTGAGATTTTATAGG
612 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* ** ** * * * *
1158646 TTTGCTACCAGTAGCCATTAAAGTGTCTGAAA--ACGAGTCGTCTTGC-CAT-G-----AAA-C-
677 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* ** * * * * * * * * *
1158700 T-T-CACGT-GAAGGCTTAAG-GGACCATTGTATGAATT-TACAAGCC-ATAAAAGTGGCATTGG
742 TGTACACTTCG-AGTTTTTAGCTGA--ATT-T-T--TTTGTGCATGCCAACAAAAAT-ACA-AGG
* * * * ** ** ** * *** * *
1158759 --CACG--TA-GAAATATGAGG----ATGTGCC-T--AAACCCA-CCTACCACCTTGTCGATCC-
798 ATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCGAAA-AAATTTTA-AAAAATCTCGAACCG
* * ** * ***** ****
1158810 ---ACAGCTTGC--GCATCCTGTCTCTCTAGCCGGCGTAGTGCCCG-
860 TAAAAAG-TTTCAAAAATCATG-AAAAATAGAAAACG-AGT---CGT
* * ** * * * * ** * * **
1158851 CCTGCC-CGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCTATCTAAGAT-C-AG
1 CTTGCCATG-AAACTTCA-CG--T-G--AAGGCTTAAGG-GACCATT--GTAT-GAATTTACAAG
** *** * * * * ***** *
1158913 ACCGGACTGA-GG-GTT-GC-CGCAGCAAGATCG--G-TG-GCACGT--A--GA-GGGGGACCCG
55 -CCATAAAAATGGCATTGGCACGCAGAAATAT-GAAGATGTGC-C-TAAACCCACCTACCACCCT
* * * ** * *
1158965 GTCGATCCCCGGCTTGCGCATCCCG-CTCCTCTAGCCATC-T-GAG--CGCCTGCTCGCTCATTT
116 ATCGATCCACGGCTTGCGCATCCCGTCT-CTCTGGCCGGCGTAGTGCCCGCCTGCCCGC-C----
** * * * * ** * * * *
1159025 CG-TGGGTTGACTTAGGCATACGGACTTCATTCCCAACCTAAGCATACGAAGTTCATTCCCAATC
175 CGCCCGCTCG--TT--TCGT-CGG------TT---GGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * *
1159089 TAAGATCAGATCAGACCGAGGGTTGCGGTAGCA-CATGCTGG--GCTCG-GGCA-TGTG--CTGG
226 TAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGGAT-C-GGCAGCACGCAG-AGGGGGACCCGG
**** * * * ** ** * * *
1159147 TGCTGCAT--TTTTCTTCGTCGGATTACCTGACCAAC-GG-C-ATTG-GGGTTCCG-ACGATCAG
287 T-C-G-ATCCCCGGCTT-G-CGCA-T-CCCGCCCCTCTGGCCGGCTGAGCG-CCCGCACGCTC-G
* * ** * *
1159205 --GCATTTGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATTAGAACGGA--TCGAGG
343 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-T---ACGGAGTTC-A--
** * * * * ** * * *
1159265 GTT-GTAGTAGC-AGGATTGACAGCACACAGAGGGGGCCGACCGATCCCCGGCTTGCGCATCCTG
401 -TTCCCAGT--CTAAGA-T--C-GGAC-CAGA-----CCGA-GGGT-TGCGGC-AGCACATGCTG
** * * * *** *** **
1159328 CCCCTCTGGC-CG-GCTGAGCGCCTGCA-CGGTCATT--TCGCGGG-TTGAT--TTAG-GCAT--
450 -GGCTCGGGCATGTGCTG-GTGCC-GCATTTTTC-TTCGTCG-GGGCACCATCGTCGGAGCATCG
* * ** * ** * * * * *** * *
1159382 ACGAAGTTCATTCCCAGTCTAAGCATACTGAGTTCACTCCCAGACTAAGATCAGACTAGACCGAG
510 CCGGAGAACCTGACC-GGC--GGCAT--TGGGGT---T-CC-GAC---GATC-G-GGGGGCCGGG
* * * * * * *** *
1159447 GGTTGCGACAGCACATGCTGGGCACGA-GCATGTGCTGGAGCCACATT-TTTCTTCACTA--GGG
560 GGGTGTG-C-GCACATGATGTG--CGATG--GGTGCT-G-G-TAC-TTGGCCCTT-A-TATTGGC
** * * * ** ** * * *
1159508 AACC-AT-CGTCGGAGC-ATCAC-CGAGAAC-CTGA--CCGGT---G-GCA-TTGGGGTTCCGGC
613 CCCCTATCCCTC--ATCAAAC-CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT----T
* * *** * ** * * * ** * *
1159561 GATCGGGGGGGCCGGGAGGGGGTGAGCGCACATGATGTG-C-GATGGGTGCTGGTACTTGGCCCT
671 TA-CAGGTTTGCTGCCA----GT-AGC-CA-TTAAAGTGTCTGA--AATG--GG-----GACACT
* ** ** * ** *** ***
1159624 TATATTGGCCCCCTATCCCTCATCAAACT-TTGAGTACTCACACCCCCTTAAAGAGCATTTGAGA
719 T-T-TT----TCAAAT-GGTCA-CAAAATCTT--GTA--CACTTCGAGTT-TTTAGC---TGA-A
** ** * * ** *
1159688 TTTTACAGGTTTGCTGCCAATAGCCATTAAAGCGT-CTGAAATGGGGA-CACTTTTTTCAA--AT
767 TTTT-----TTTG-TG-C-AT-GCCAACAAA-AATAC---AA---GGATCACGTCTACCAAGTTT
* **
1159749 -GGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTGTTTTGCATGCCAACAAAAATA
816 GGGGC-CAAAA-C---T-C-CTTCGA------A----AA----AATTT---T----A-AAAAAT-
** ** ** *
1159813 CAAGGATTA-CGTCTACCAAGTTTGGGGCAAAAATTACTTCCAAAAAAATATTAAAAAATCCCGA
851 C-TCGA--ACCG--TAAAAAGTTT----C-AAAA--A--T-CATGAAAA-A-TAGAAAA---CG-
*
1159877 ACCGTAAAAAGT
895 A--GT----CGT
* *
1159889 TTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
1 CTTG-----C------CAT-G-AAA-------------C-------TTCACGTGAAGGCTTAAGG
*
1159954 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
33 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * * *
1160019 AAACTCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGGCGGCATAGTG--
98 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * ** * *
1160082 C-CC-GCCCGCCCGTCCGCTCGTTTCATCAGTTTTCTTAGGCATACAGAGTTCATTCCCAATCTA
163 CGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * ** *
1160145 AGATCGGATCAGATCAAGGGTTGCGATAGTAGGATCGACAGCACATAGAGGGGGACACGGTCGAT
228 AGATCAGACCGGA-CGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGAT
* * * * * *
1160210 CCTCAGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACACTCGTTCCATGGGTTGAC
292 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * * * * *
1160275 ATAGGGATATGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCTAGACTAAGATCAGACC
357 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * **
1160340 AGACCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTCACC
422 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * **
1160405 GAGGCACCA---TC---G--T---CGGAGAACCTGACCGGTGGCAATGGGGTTCCGGTGATCGGG
487 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GG
* *
1160459 GGGGCCGGGAGGGGGTGAGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGC
551 GGGGCC--G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
1160524 CCCCTATCCCTCATCAAACTTTGAGTACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
613 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
1160589 TTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
678 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
1160654 GTACACTTCGAGTTTTTAGCTGAATTCTTTTT-TGCATGCCAACAAAAATACAAGGATTACGTCT
743 GTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
1160718 ACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATATTAAAAAATCTCGAACCGCAAAAAG-TT-
807 ACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
*
1160781 -----T--TG-AAAAT-----ACGGGTCGT
871 AAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1160798 CTTGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
1160863 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1160928 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCACTTGTTTCGTCCGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * ** * * *
1160993 GGCTTAGGCATACAGAGTTCATTTGCTGTCTAAGATTGGACCGGATCGATGGTTGTGGCAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * ** * * * *
1161058 ATCAGTAGCACGTAGAGTTGGATCGGGCCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1161123 TGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAGGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
1161188 TACGGAGTTCATTCCCTGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* ** * *
1161253 GAGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* ** *
1161318 TGACCGACGAAATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGCGCACATGATGTGCGAT
520 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
1161383 GGGAGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
584 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
1161448 CCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGAGG
649 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
1161513 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCA
714 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * ****
1161578 AGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAAGGATTTCTGAAAAAAT
779 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC--AAAACTCCTTC-GAAAAAAT
*
1161643 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
841 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1161703 CTTGCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1161768 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * * * * *
1161833 GTGCATCCTATCTCTCTGGCCGGCGTAATGCCCACGC-GCCCGCCCACCCCCTCATTTCGTCGAT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
1161897 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCTGACCAAGGGTTGCAGTAGCAG
195 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAG
* * ** * * * * *
1161962 GATCGACAGAACATAGAGGGGGACCCGATCTATCCTCGGCTTGCGCATCCCGCCCCTCTGTCTGG
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * **
1162027 CTAAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAAGC
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * ** * *
1162092 ATA-GGAGTTCATTCCAAGTCTAAGATCAGACC-GAACTGAGGGTCGCGAAAGTAGATGCTGGGC
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** *
1162155 TCGGGCATGTGCTGGGGCTACATTTTTCTTCGTC-GGG-------GT---ACCATCGCCGGAGAA
453 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * *
1162209 CCTGACCGACGGCATTGGGGTTTCGACAATCGGGTGGGCCGGGGGGGTGTGAGCACATGATGTGC
518 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGGTGTGCGCACATGATGTGC
* * *
1162274 GATGGGTGCTGGCACTTGGCCCTTAGATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACA
581 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1162339 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
646 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1162404 GGGACACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAATTGTTTTGT
711 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
1162469 GCATGCCAAGAAAAAT------A-CACGTCAACCAAGTTTGGGGCAAAAAATGCTTCCGAAAAAA
776 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
* *
1162527 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG-CTAT
840 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-GT
*
1162588 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1162653 GCATTGGCACGCAAAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** ** * * *
1162718 GCACATCCCGTCTCTCTAGCCGGTATAGT----GCCTATCCG--C-CCTGCTCATTTCGTCAGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** * *
1162776 GGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGACTAGATCGAGGGTTGTGGCAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * * *
1162841 ATCTGTAGCACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCACCCCTCTGGCCGGT
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1162906 TGAGCGCCCGTACGCTCGTTTAGTGGGATGACTTAGGCATAC---G---A-----AG--T-----
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
1162953 T-C--A-TTC--T---AGTCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCACATGCTAGG-TC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
1163008 GGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGACCATCGTCGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
** ** *
1163073 TGACCGGCGGCATTGGGGTTTTGGTGATCGGGGTGGCCGGGGGGGTGTGCGCACATGATGTGTGA
520 TGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
1163138 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGA-CCCTCATCAAGCCTCGAGAAGTCACAC
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTCACAC
* *
1163202 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1163267 GGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAA-TTTTTTGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* **
1163331 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTTTTCCGAAAAAAT
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
* * * * * * *
1163396 TTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCGTGGAAAATAAAAAACGAGTCGT
841 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1163456 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *** **
1163521 GCATTGGGAAATAGAAATATGAAGATGACCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * * *
1163586 GCGTATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCACCCGCCTGTTCGTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * *
1163651 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTAAGGGTTACGGTAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAGCAGG
** * *
1163716 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1163781 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
1163846 TACGGAGTTAATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATACTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * ** *
1163911 AGACATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCA---TC---G--T---CGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * * *
1163965 TGACCGGTGACATTAGGGTTCCGATGATCCGGGGGGGCCGGGGGGTGTTCGTACATGATGTGCGA
520 TGACCGGCGGCATTGGGGTTCCGACGAT-C-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
1164030 TGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAAT-AAACCTCAAGAACTCACA-
583 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCACAC
* * * *
1164093 CCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAACGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
1164158 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCCGAATTTTTTTTTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * ***
1164223 CATGCCAAAAAAAATACAAGAATCATGTCTACCAAGGTTATAGCCAAAACTCCTTCTGAAAAAAT
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAAT
* * * *
1164288 TTAAAAAAATC-CTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCAT
841 TTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
1164348 CTTGCCATGAAACTTCACGTGAAGGCTGAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATA
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1164413 GCATCGGCACACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * ** *
1164478 GCGTATACCGTCTCTCTGGCCGGCATAGTGCTCGCCCGCTCGCCCGTCTTCTCGTTTCGTCAGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * * * *
1164543 GGCTTAAGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * *
1164608 ATTGGCAGCACACAGAGGGGGACCCGATCGATCCCTGGCTCGCGCATCTCGCCCCTCTGGCCGGT
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1164673 TGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCT
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
1164738 TACGAAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCACATACTCGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * *
1164803 GGGCATCTGCTGGTGCTGCATTTTTCTTTGCCAGGGCACCATCGCCGGAGCATCGTCGGAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * **
1164868 TAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGTGTTCGCACGGGATGTGCGATG
520 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
1164932 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TC-CAACCC
585 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCC
* *
1164995 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAATGGGG
649 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
1165060 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCG
714 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
1165125 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCTTTCTGAAAAAATTA
779 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTT
* * ** **
1165190 AAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGGT-GT
843 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-GTCGT
* *
1165248 CTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
1165313 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1165378 GCGCATCTCGTCTCTCTGGCCGGCGTAGTG--C-TC-GCCCGCCCACCCGCTCGTTTCGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * * *
1165439 CGCTTAGGCATACGGAGTTCAGTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCGGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * *
1165504 ATCGGCAGCACGTAGAGGGGGA-CCTGACTGATCCCTGGCTTACGCATCCCGCCCATCTGGTCGG
260 ATCGGCAGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * ** * *
1165568 CTGAGCGCCTGTAGGCTCATTTTATGGGTCGACTTAGGCATACGAAGTTCATTCCCAGT-TAAG-
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
1165631 -T-C--AG--GA----C---C----A--GG--C-GA--G-GGGTTACGGCAG-ACATGCT-GGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
1165669 CGGGCATGTGCTGG-GCCACATTTTTCTTCGTGCGGGGCACCATCGTC-G-GCATTC-CTGGAGA
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCA-TCGCCGGAGA
* * *
1165730 ACCTGACC-GC-GCACTGGGGGTTCCGACGATTCGGAGGGGGCCGGCGGGT-TACGCACATGATG
517 ACCTGACCGGCGGCA-TTGGGGTTCCGACGA-TC-G-GGGGGCCGGGGGGTGTGCGCACATGATG
* * * * *
1165792 TGCGATGGGCGCTAGTACTTGGCCCTTATA-TGGCCCCCTCTCCCTTATCCAAACC-CGAGAAAT
578 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACT
* * **
1165855 AAACACCCCCTTAAAGAGCA-TTGAAGAGTTTACAGGTTTGCCACCAGTAGCCATTAAAGTGTCT
642 -CACACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * **
1165919 GAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGAAGAATTT
705 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * ** * * *
1165984 TTTTGTGCATGCCAACAAAAAT-CATGCATTACGTCTAATAAGTTTAGGCCCAAAAATCCTTCTG
770 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-G
* * ** *
1166048 AAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
834 AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
1166113 GT
899 GT
1166115 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1166180 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
1166245 -CGGCATCCCATCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCCGTCAGATCATTTCATCGGT
131 GC-GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * ** ** * * * * *
1166308 CGACTTATTCATATAGAGTTCATTTCCAGTCTAAGATCAGACTGGACCAAGCGTTGCGGCAGCAG
195 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAG
* * * * * * * * *
1166373 GATCGGTAGCACGTAGTGAGGGACCCGATCGATCCTCGGCTCGCACATCCCGCCCTTCTGGCCGG
259 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* ** * * *
1166438 CTGAGAGCCCGCGTGCTCGTTTCGTTGGTTGACTTCGGCATACGGAGTTCATTCCCAGTCT-AGA
324 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
1166502 AT-C-G-G---------A--CT---A---GACC--A---AGGGTTGCTGCAGCACACGCTAGGCT
389 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* ** * * *
1166542 CGAGCATGTGCTGGTGCTACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAAC
454 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * *
1166607 CTGACCGGTGGCATTGGGGTTCC-AGCGATCGGGGGAGTCGGGGGGTGTTCGCACGTGATGCGCG
519 CTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCG
* *
1166671 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCACA-
582 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
1166735 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1166800 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
1166865 CGTGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGTGCCAAAACTCCTTTCAAAAAAAT
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAAT
* ** *
1166930 TTTAAAAAATCCCGAACCACAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGT
841 TTTAAAAAATCTCGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
1166990 CTTGCCAAGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1167055 GCATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACTGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1167120 GTGCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCCCGCTCGTTTTGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * *
1167185 GGGTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGGCAA
192 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAG
* * * * ** * * *
1167250 CAAGATCGGTAGCATGCAAAAGGGGG-CCCGACCGATCCTCGGGTTGTGCATCCCG-CCCTCTGG
256 CAGGATCGGCAGCACGC-AGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * *
1167313 CCGTCTGAGCGCTCGTAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCT
320 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
1167378 AAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATACTG
385 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * * *
1167443 GCCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCATCGGGGCACCATCTTCGGAGCATCGTCGAA
450 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
1167508 GAACCTGACCGGTGGCATTGGGGTTTC-AGCAATCGGGGGGGCCGAGGGGGGTGTGCGCACATGA
515 GAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCC--GGGGGGTGTGCGCACATGA
1167572 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
576 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1167637 TCAGACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
641 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
1167702 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTT
706 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
1167767 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACGCCTTC-AG
771 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGA-
* **
1167831 AAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCG
835 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
1167896 T
900 T
* ** *
1167897 GTTTTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1167962 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCAATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1168027 GCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCTGCCCGCCCGCCCGCTCATTTCATCGATT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * ** * * * * *
1168088 GACCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAATAGAAGGTTGCAGCAACAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCGGTAGCAGG
* * * * * * * *
1168153 ATAGGCAGCACGCAGAGGCGGACCCAGCCGATCCTCGGCTTACGCATCCCGCCCCTCTAGCCGAC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
1168218 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC--TGT---C-
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
1168277 TA---AG---ATT----G-----GAT-----CAGATCGAGGGTTGCGGCAGCACATGATGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
** * * **
1168322 GGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAATT
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * *
1168387 TGACCGACGGCATTAGGGTTCCGATGGTCAGGGGGGCTAGGAGGGGTGTGCGCACATGATGTGCG
520 TGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGC-CGG-GGGGTGTGCGCACATGATGTGCG
* *
1168452 ATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCGAACCTCGAGAACTCACAC
582 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1168517 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
1168582 GGACACTTTTTTCGAA-CGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** * * ** ** *
1168646 CATGCTGACAAAAATAAAAGTATCACGTCTACCAAGTTTTAGGTGAAAAATCCTTCCGAAAAAAT
777 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
* * * ** *
1168711 TTTAAAGAATCTCGAAACATAAAAAGTTTTGAAAATCATGAAAAATAGCAAACGAGTCGT
841 TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * *
1168771 CTTGCCATTAAAACTTCACGTGAAGGCATAAGGGACCATTATATGAATTTACAAGTCATAAAAAT
1 CTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1168836 GACATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
65 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
1168901 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACTCGTCCGTCCGCCCACCTGCTCGTT
130 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CT-G--C--CCGCCCGCCCGCTCGTT
* * * *
1168966 CCGTCGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGC
187 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGC
* * * * ** * *
1169031 GGCAGCAGGATCGGTAGCATGCAGAGGTGGACCCGACCGATCCCCGGGTT-CTACATCCCGCCCC
251 GGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGC-GCATCCCGCCCC
* * * * * *
1169095 TCTGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGCTCATTCCC
315 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * ***
1169160 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGCCGAGGGTTGCTATAGCACA
380 AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACA
* * *
1169225 TGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC-TC-TACCGAGGCCCCATCGTCGGAGCAT
445 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT--CGGGGCACCATCGTCGGAGCAT
* * * *
1169288 CACCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGAGGGGTCCGGGGGGGGTGTGCGC
508 CGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC--GGGGGGTGTGCGC
*
1169353 ACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
570 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
1169418 GCA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
635 G-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
1169482 GTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT
699 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * * * * *
1169547 G-ATTTCTTTTGTGCATGCCAAGAAAAATACAAGGATCACATATGCCAAGTTT-GGCCCAAAAAT
764 GAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * ** *
1169610 CCTTTCGAAGAAATTTTAAAAAATCTCGAACCACAAAAAATTTTGAAAATCCTGAAAAATAGAAA
828 CC-TTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
1169675 ACGAGTCTT
892 ACGAGTCGT
*
1169684 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CACATTGTATGAGTTTACAAGCCATAAAAAT
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC-CATTGTATGAATTTACAAGCCATAAAAAT
** *
1169748 GTAATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
65 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
1169813 TGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCTGTGCGCCCGCCCGCCCGCTTG-TTCTT
130 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--T--GCCCGCCCGCCCGCTCGTTTC-G
* * * * * * *
1169877 TCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTAAGGTTTACGGT
190 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGT
* * * * * *
1169942 AGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCTTGTGCATCCCACCCCTCTG
254 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * **
1170007 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCATAGTC
319 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
1170072 TAAGCATACGGAGTTCGTTCCCAGTCTATGATCGGATCAGAACGAAGGTTACGACAGCACATGCT
384 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCT
* * * *
1170137 CGACGCTAGCAGGGC-TGGTGCTGGTGCTGCATTTTTCTCCGTTGGGGCACCATCGTCGGAGCAT
449 -G-GGCT--C-GGGCAT-GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT
* * * * * *
1170201 CGTCGGAGAACCTGATCGGTGGCATTGGGGTTCCCG-CAATCGGGCGTGTCGGGGGGTGT-C-CA
508 CGCCGGAGAACCTGACCGGCGGCATTGGGGTT-CCGACGATCGGG-GGGCCGGGGGGTGTGCGCA
*
1170263 CGGATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
571 C--ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
1170328 CGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC---AGCCATTAAA
634 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
1170390 GTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCT
699 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
1170455 GATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTT-GGACCTAAAACT
764 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACT
* * * *** * *
1170519 CTTTTGAAAAAAATTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATTAAGAAAAATAGAAAA
828 CCTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
1170584 TGAGTCGT
893 CGAGTCGT
* * *
1170592 CTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCACTGTATGAATTTACAGGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * **
1170657 GCATTGGCATGCAGAAATATGAAGATATGTCTAAACCCACCTAGTACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1170722 GCGCGTCCCATCTCTCTGGCTGACGTAGTG-CCGCCTGCCCGCCCGCCCGCTTGCCTGCTCATTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGC-T--C-G----TTT
* * ** * *
1170786 TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAAACCAAGGGTTGCA
188 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CGAGGGTTGCG
** * * * * * * * * *
1170851 AAAGCAAGATCGGCAGCACACAAAAGGGGACCTGGGCGTTCCCCGACTTGCGCATCCTGCCCCTC
252 GTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * * * * *
1170916 TAGCCGACAGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCCAG
317 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * ** * *
1170981 TCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAAATGACGGTTGCGGTAGCACATG
382 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* ** * *
1171046 CTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGTATCGTC
447 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCC
* * *
1171111 GGAGAACCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGCCGGGGGGTGTGCGCACTTGAT
512 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
1171175 GAGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
577 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1171240 CCCACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTA
642 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
1171305 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATT
707 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TT
* * *
1171370 TTT-TGCATGCCAAC-AAAACACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCCAG
771 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGA-
* * ** *
1171433 AAAAATTTGAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCG
835 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
1171498 T
900 T
*
1171499 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * **
1171564 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCCATGACCCTATCGATCCACGGCTT
66 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
1171629 GCGCATCCCGTCTCTCTGGCCGGC--A-T---AG--TGCCCGCCCGCCCGCTCGTTTTGTCGGTT
131 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
** **
1171686 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGCAGG
196 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC-GAGGGTTGCGGTAGCAGG
* * * * * * *
1171751 ATTGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTACGCATCCCACCTCTCTGGTCGGC
260 ATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1171816 TGAGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
325 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
1171881 TACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTC
390 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
1171946 GAGCATGTGCTGGTGCCGCATTTTTTTTCGCCAGGGCACCATCGTCGGAGCATCGCCGAAGAACC
455 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * *
1172011 T-ATCCGACGGCATTGGGGTTCTGACGATCGGGGGGGTCGGAGGGGTGAGCGCACATGATGTACG
520 TGA-CCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCG
1172075 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
582 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
1172140 CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAATGG
647 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
** *
1172205 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTGGTG
712 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
1172270 CATGCCAACAAGAATACAAGGATCA
777 CATGCCAACAAAAATACAAGGATCA
1172295 TTGTATGAAT
Statistics
Matches: 32000, Mismatches: 4692, Indels: 3243
0.80 0.12 0.08
Matches are distributed among these distances:
840 1 0.00
841 35 0.00
843 2 0.00
844 1 0.00
845 1 0.00
847 5 0.00
848 130 0.00
849 48 0.00
850 266 0.01
851 30 0.00
852 39 0.00
853 4 0.00
854 4 0.00
855 5 0.00
856 184 0.01
857 12 0.00
858 144 0.00
859 151 0.00
860 3 0.00
861 30 0.00
862 479 0.01
863 506 0.02
864 525 0.02
865 121 0.00
866 121 0.00
867 851 0.03
868 788 0.02
869 656 0.02
870 192 0.01
871 253 0.01
872 104 0.00
873 455 0.01
874 857 0.03
875 969 0.03
876 456 0.01
877 506 0.02
878 753 0.02
879 305 0.01
880 673 0.02
881 99 0.00
882 278 0.01
883 86 0.00
884 101 0.00
885 711 0.02
886 385 0.01
887 361 0.01
888 479 0.01
889 349 0.01
890 570 0.02
891 552 0.02
892 1073 0.03
893 1092 0.03
894 485 0.02
895 443 0.01
896 633 0.02
897 1054 0.03
898 425 0.01
899 503 0.02
900 1057 0.03
901 1982 0.06
902 1324 0.04
903 937 0.03
904 844 0.03
905 883 0.03
906 482 0.02
907 595 0.02
908 740 0.02
909 38 0.00
910 24 0.00
911 343 0.01
912 159 0.00
913 434 0.01
914 95 0.00
915 11 0.00
916 11 0.00
917 6 0.00
918 8 0.00
919 7 0.00
920 1 0.00
921 6 0.00
922 228 0.01
923 22 0.00
924 18 0.00
925 12 0.00
926 16 0.00
927 11 0.00
928 46 0.00
929 20 0.00
930 6 0.00
931 46 0.00
932 29 0.00
933 11 0.00
934 7 0.00
935 13 0.00
936 5 0.00
937 6 0.00
938 18 0.00
939 67 0.00
940 59 0.00
941 25 0.00
942 188 0.01
943 111 0.00
944 21 0.00
945 9 0.00
946 7 0.00
947 5 0.00
948 16 0.00
949 8 0.00
950 3 0.00
951 9 0.00
952 1 0.00
953 2 0.00
954 1 0.00
956 1 0.00
957 1 0.00
959 2 0.00
960 3 0.00
961 2 0.00
962 1 0.00
963 3 0.00
964 3 0.00
965 5 0.00
967 2 0.00
968 1 0.00
969 1 0.00
970 4 0.00
971 4 0.00
972 5 0.00
973 4 0.00
974 1 0.00
975 5 0.00
976 11 0.00
977 2 0.00
978 9 0.00
979 5 0.00
980 1 0.00
981 9 0.00
982 2 0.00
983 1 0.00
984 2 0.00
985 2 0.00
986 4 0.00
987 1 0.00
989 1 0.00
990 3 0.00
991 5 0.00
994 3 0.00
995 7 0.00
997 3 0.00
998 5 0.00
999 6 0.00
1000 3 0.00
1004 2 0.00
1005 1 0.00
1006 6 0.00
1010 4 0.00
1011 2 0.00
1012 2 0.00
1013 8 0.00
1014 5 0.00
1015 8 0.00
1016 12 0.00
1017 10 0.00
1018 8 0.00
1019 7 0.00
1020 12 0.00
1021 5 0.00
1022 16 0.00
1023 3 0.00
1024 97 0.00
1025 121 0.00
1026 106 0.00
1027 141 0.00
1028 101 0.00
1029 78 0.00
1030 113 0.00
1031 203 0.01
1032 130 0.00
1033 134 0.00
1034 107 0.00
1035 114 0.00
1036 732 0.02
1037 111 0.00
1038 105 0.00
1039 137 0.00
1040 124 0.00
1041 102 0.00
1042 50 0.00
1043 67 0.00
1044 33 0.00
1045 46 0.00
1046 36 0.00
1047 55 0.00
1048 48 0.00
1049 39 0.00
1050 35 0.00
1051 19 0.00
1052 35 0.00
1053 308 0.01
1054 145 0.00
1055 61 0.00
1056 49 0.00
1057 43 0.00
1058 177 0.01
1059 261 0.01
1060 164 0.01
1061 79 0.00
1062 58 0.00
1063 67 0.00
1064 63 0.00
1065 66 0.00
1066 99 0.00
1067 110 0.00
1068 106 0.00
1069 39 0.00
1070 49 0.00
1071 49 0.00
1072 60 0.00
1073 54 0.00
1074 48 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAGGGTTGCGGTAGCAGGA
TCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAA
AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
Found at i:1135263 original size:26 final size:26
Alignment explanation
Indices: 1135224--1135279 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
1135214 TGGGTTGACT
1135224 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
1135250 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
1135276 TAAG
1 TAAG
1135280 ATCGGACTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:1137015 original size:26 final size:26
Alignment explanation
Indices: 1136986--1137038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1136976 GTTGACTTAG
1136986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1137012 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1137038 G
1 G
1137039 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1137928 original size:26 final size:26
Alignment explanation
Indices: 1137892--1137944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1137882 GTTGACTTAG
*
1137892 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
* *
1137918 GCATGCGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTAATTCCAAGTCTAA
1137944 G
1 G
1137945 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCAAGTCTAA
Found at i:1142328 original size:26 final size:26
Alignment explanation
Indices: 1142292--1142342 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1142282 GTTGACTTAG
* *
1142292 GCATACGGAGTTCATTTCCAGTCTAC
1 GCATACCGAGTTCATTCCCAGTCTAC
1142318 GCATACCGAGTTCATTCCCAGTCTA
1 GCATACCGAGTTCATTCCCAGTCTA
1142343 AGATTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAC
Found at i:1144115 original size:26 final size:26
Alignment explanation
Indices: 1144085--1144163 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
1144075 GTTGACTTAG
*
1144085 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1144111 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1144137 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1144163 G
1 G
1144164 ATTGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1145043 original size:26 final size:26
Alignment explanation
Indices: 1145007--1145059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1144997 GTTGACTTAG
1145007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1145033 GCATCCGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1145059 G
1 G
1145060 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1145955 original size:26 final size:26
Alignment explanation
Indices: 1145908--1145960 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1145898 GTTGACTTAG
* *
1145908 GCATACAGATTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1145934 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1145960 G
1 G
1145961 ATCGGGCCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1146785 original size:26 final size:26
Alignment explanation
Indices: 1146756--1146806 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1146746 GTTGACTTAG
*
1146756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1146782 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1146807 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1147687 original size:26 final size:26
Alignment explanation
Indices: 1147658--1147710 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1147648 GTTGACTTAG
*
1147658 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1147684 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1147710 G
1 G
1147711 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1150362 original size:26 final size:26
Alignment explanation
Indices: 1150325--1150377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1150315 GTTGACTTAG
*
1150325 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
1150351 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1150377 G
1 G
1150378 ATCGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1152162 original size:26 final size:26
Alignment explanation
Indices: 1152125--1152177 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1152115 GTTGACTTAG
*
1152125 GCATACGAAGTTGATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
1152151 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
1152177 G
1 G
1152178 ATTGGATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1153934 original size:26 final size:26
Alignment explanation
Indices: 1153897--1153949 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1153887 GTTGACTTAG
* *
1153897 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1153923 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1153949 G
1 G
1153950 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1154796 original size:26 final size:26
Alignment explanation
Indices: 1154766--1154818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1154756 GTTGGCTTAG
1154766 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1154792 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1154818 G
1 G
1154819 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1156587 original size:17 final size:17
Alignment explanation
Indices: 1156562--1156597 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
1156552 TTGAGTTAGG
*
1156562 CATATGGAGTTCATTCC
1 CATACGGAGTTCATTCC
1156579 CATACGGAGTTCATTCC
1 CATACGGAGTTCATTCC
1156596 CA
1 CA
1156598 GTCTAAGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.31
Consensus pattern (17 bp):
CATACGGAGTTCATTCC
Found at i:1157325 original size:26 final size:26
Alignment explanation
Indices: 1157295--1157347 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1157285 GTTGACTTAG
1157295 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1157321 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1157347 G
1 G
1157348 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1158324 original size:159 final size:159
Alignment explanation
Indices: 1158035--1158384 Score: 574
Period size: 159 Copynumber: 2.2 Consensus size: 159
1158025 CATCAGTTAG
*
1158035 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGCGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGCGGCAGCAGGAT
* * * *
1158100 CGGTAGCATGCAGAGGGGGACCCGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGTCGGCTG
66 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTG
*
1158165 AGTGCCCGCACACTCATTTCGTGGGTTGA
131 AGTGCCCGCACACTCATTTCGTGGGCTGA
* * *
1158194 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGCGGCAGCAGGAT
*
1158259 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTG
66 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTG
* * *
1158324 AGTGCCCGTACGCTCGTTTCGTGGGCTGA
131 AGTGCCCGCACACTCATTTCGTGGGCTGA
*
1158353 CTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1158385 CAAACAAAGT
Statistics
Matches: 177, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
159 177 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.21
Consensus pattern (159 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACAGAGGGTTGCGGCAGCAGGAT
CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGGCTG
AGTGCCCGCACACTCATTTCGTGGGCTGA
Found at i:1159079 original size:26 final size:26
Alignment explanation
Indices: 1159040--1159092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1159030 GTTGACTTAG
*
1159040 GCATACGGACTTCATTCCCAACCTAA
1 GCATACGAACTTCATTCCCAACCTAA
* *
1159066 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAACTTCATTCCCAACCTAA
1159092 G
1 G
1159093 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAACCTAA
Found at i:1159415 original size:26 final size:26
Alignment explanation
Indices: 1159378--1159430 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1159368 GTTGATTTAG
* *
1159378 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGACTAA
1159404 GCATACTG-AGTTCACTCCCAGACTAA
1 GCATAC-GAAGTTCACTCCCAGACTAA
1159430 G
1 G
1159431 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGACTAA
Found at i:1162099 original size:25 final size:26
Alignment explanation
Indices: 1162064--1162115 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1162054 GTTGACTTAG
**
1162064 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1162090 GCATA-GGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1162115 G
1 G
1162116 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1163846 original size:26 final size:26
Alignment explanation
Indices: 1163817--1163869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1163807 GTTGACTTAG
*
1163817 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
1163843 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
1163869 G
1 G
1163870 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:1164255 original size:892 final size:891
Alignment explanation
Indices: 1162942--1181288 Score: 12951
Period size: 892 Copynumber: 20.5 Consensus size: 891
1162932 GATGACTTAG
* * * * ** * *
1162942 GCATACGAAGTTCATT-CTAGTCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
1163006 -TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGG-ACCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-T--T-----CACCA--G--GGCACCATCGTCGGAG
** ** *
1163069 AACCTGACCGGCGGCATTGGGGTTTTGGTGATCGGGGTGGCCGGGGGGGTGTGCGCACATGATGT
119 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
1163134 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGA-CCCTCATCAAGCCTCGAGAAGTC
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCGAGAACTC
* *
1163198 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1163263 ATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGATTTTAGCTGAA-TTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
**
1163327 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTTTTCCGAAA
377 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * *
1163392 AAATTTTAAAAAATCCCAAACTGCAAAAAGTTTCAAAAATCGTGGAAAATAAAAAACGAGTCGTC
442 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
1163457 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *** **
1163522 CATTGGGAAATAGAAATATGAAGATGACCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
572 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
1163587 CGTATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCACCCACCCGCCTGTTCGTTTCGTCGGTTG
637 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTG-TCGTTTCGTCGGTTG
* * * *
1163652 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTAAGGGTTACGGTAGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGA
*
1163717 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCT
766 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
1163782 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1163843 GCATACGGAGTTAATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGCGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
1163908 CTCAGACATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGAACCTGACCGGT
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGAACCTGACCGGC
* * * * *
1163973 GACATTAGGGTTCCGATGATCCGGGGGGGCCGGGGGGTGTTCGTACATGATGTGCGATGGGTGCT
131 GGCATTGGGGTTCCGACGAT-CGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1164038 TGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAAT-AAACCTCAAGAACTCACA-CCCCTTAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
1164101 AGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTTAAACGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
1164166 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCCGAATTTTTTTTTGCATGCCAA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *** * *
1164231 AAAAAATACAAGAATCATGTCTACCAAGGTTATAGCCAAAACTCCTTCTGAAAAAATTTAAAAAA
389 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
1164296 ATCCTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
454 ATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
1164361 TTCACGTGAAGGCTGAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATAGCATCGGCACACA
519 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
1164426 TAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATACCGTCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * * *
1164491 CTCTGGCCGGCATAGTGCTCGCCCGCTCGCCCGTCTTCTCGTTTCGTCAGTTGGCTTAAGCATAT
649 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCTGTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
1164556 AGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGCAGTAGGATTGGCAGCACAC
713 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* * * * *
1164621 AGAGGGGGACCCGATCGATCCCTGGCTCGCGCATCTCGCCCCTCTGGCCGGTTGAGCGTCCGCAC
778 AGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
1164686 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * *
1164735 GCTTACGAAATTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCTGCAGCACATACTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * **
1164800 CTCGGGCATCTGCTGGTGCTGCATTTTTCTTTGCCAGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGG---CA----C----CATCGTCGGAGA
* * **
1164865 ACCTAACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGTGTTCGCACGGGATGTGC
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
1164928 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TC-CA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-
* *
1164991 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTGAAAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1165056 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTT
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1165121 TGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCTTTCTGAAAAA
379 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
1165186 ATTAAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGGT-GTCT
444 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA-GTCGTCT
* *
1165250 TGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1165315 ATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
573 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1165380 GCATCTCGTCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCACCCG-C--TCGTTTCGTCGGTTCGC
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGTCGTTTCGTCGGTTGGC
* * * * *
1165442 TTAGGCATACGGAGTTCAGTCCCAGTCTAAGATCGGACC-AGACCAAGGGTTGTGGCAGCGGGAT
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTAAGGGTTGCGGCAGCAGGAT
* * * * * *
1165506 CGGCAGCACGTAGAGGGGGACCTGACTGATCCCTGGCTTACGCATCCCGCCCATCTGGTCGGCTG
767 CGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * ** *
1165571 AGCGCCTGTAGGCTCATTTTATGGGTCGACTTAGGCATAC-GAAGTTCATTCCCAGT-TAA
832 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* *
1165630 G--T-C--AG--GA---CCAG-----G--C-G---AG-----GGGTTACGGCAG-ACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** *
1165667 CTCGGGCATGTGCTGG-GCCACATTTTTCTTCGTGCGGGGCACCATCGTCGGCATTCCTGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCAGGGCACCA---TC-G---T-C-GGAGAA
* * *
1165731 CCTGACC-GC-GCACTGGGGGTTCCGACGATTCGGAGGGGGCCGGCGGGT-TACGCACATGATGT
121 CCTGACCGGCGGCA-TTGGGGTTCCGACGA-TCGG-GGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * *
1165793 GCGATGGGCGCTAGTACTTGGCCCTTATA-TGGCCCCCTCTCCCTTATCCAAACC-CGAGAAATA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACT-
* * **
1165856 AACACCCCCTTAAAGAGCA-TTGAAGAGTTTACAGGTTTGCCACCAGTAGCCATTAAAGTGTCTG
246 CACACCCCCTTAAAGAGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * **
1165920 AAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGAAGAATTTT
310 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * ** * * * *
1165985 TTTGTGCATGCCAACAAAAAT-CATGCATTACGTCTAATAAGTTTAGGCCCAAAAATCCTTCTGA
375 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
1166049 AAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
440 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
1166114 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
505 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1166179 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
570 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
1166244 T-CGGCATCCCATCTCTCTGGCCGACGTAGTG-CCGCCCGCCCGCCCGTCAGATCATTTCATCGG
635 TGC-GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTG-TCGTTTCGTCGG
* * ** ** * * * * *
1166307 TCGACTTATTCATATAGAGTTCATTTCCAGTCTAAGATCAGACTGGACCAAGCGTTGCGGCAGCA
698 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCA
* * * * * * * *
1166372 GGATCGGTAGCACGTAGTGAGGGACCCGATCGAT-CCTCGGCTCGCACATCCCGCCCTTCTGGCC
763 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCC
* ** *
1166436 GGCTGAGAGCCCGCGTGCTCGTTTC-------G--TT-GG--T--TGA---C-TT--C-G-----
827 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
1166475 GCATACGGAGTTCATTCCCAGTCT-AGAATCGGACTAGACCAAGGGTTGCTGCAGCACACGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGG
* ** *
1166539 GCTCGAGCATGTGCTGGTGCTACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGG---CA----C----CATCGTCGGAG
* * * * * *
1166604 AACCTGACCGGTGGCATTGGGGTTCC-AGCGATCGGGGGAGTCGGGGGGTGTTCGCACGTGATGC
119 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
1166668 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACCCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1166733 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1166797 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
1166862 TTGCGTGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGTGCCAAAACTCCTTTCAAAAA
378 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
1166927 AATTTTAAAAAATCCCGAACCACAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
1166992 TGCCAAGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1167057 ATTGGCACGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACTGCTTGT
573 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
1167122 GCATCCCGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCGCCCGCTCGTTTTGTTGG
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCCTG-TCGTTTCGTCGG
* * * * * * * *
1167187 GTGGCTTAGGCATATGGAGCTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTGCGGCAACA
698 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCA
* * * * * *
1167252 AGATCGGTAGCATGCAAAAGGGGG-CCCGACCGAT-CCTCGGGTTGTGCATCCCG-CCCTCTGGC
763 GGATCGGCAGCACGC-AGAGGGGGACCCGACCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
1167314 CGTCTGAGCGCTCGTAAGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTA
826 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
1167379 A
891 A
* * * * *
1167380 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGCACATACTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
1167445 CTCGGGCATGTGCTAGTGCCGTATTTTTCTTCATCGGGGCACCATCTTCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCA---TC---G--TCG--G-AGA
* * *
1167510 ACCTGACCGGTGGCATTGGGGTTTC-AGCAATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
120 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
1167574 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1167639 AGACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1167704 ATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
1167769 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACGCCTTCAG-AA
377 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
1167833 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTG
442 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
** *
1167898 TTTTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1167963 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCAATCCACGGCTTG
572 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1168028 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCG-C--TCATTTCATCGATTGA
637 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGTCGTTTCGTCGGTTGG
* * * * * *
1168090 CCTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC-AAATAGAAGGTTGCAGCAACAGGA
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTA-AGGGTTGCGGCAGCAGGA
* * * * *
1168154 TAGGCAGCACGCAGAGGCGGACCC-AGCCGAT-CCTCGGCTTACGCATCCCGCCCCTCTAGCCGA
766 TCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
1168217 CTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAA
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
1168280 G-AT--TG-G---------A-TC--AGAT-----C-G----AGGGTTGCGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
** *
1168319 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGTCGG-AGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA--TTT-TTC-TT----CACCA--G--GGCACCATCGTCGGAG
** * * * * * *
1168383 AATTTGACCGACGGCATTAGGGTTCCGATGGTCAGGGGGGCTAGGAGGGGTGTGCGCACATGATG
119 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC-CGG-GGGGTGTGCGCACATGATG
* *
1168448 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCGAACCTCGAGAACTC
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
1168513 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1168578 ATGGGGACACTTTTTTCGAA-CGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTT
312 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * * ** ** *
1168642 TGTGCATGCTGACAAAAATAAAAGTATCACGTCTACCAAGTTTTAGGTGAAAAATCCTTCCGAAA
377 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** *
1168707 AAATTTTAAAGAATCTCGAAACATAAAAAGTTTTGAAAATCATGAAAAATAGCAAACGAGTCGTC
442 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
1168772 TTGCCATTAAAACTTCACGTGAAGGCATAAGGGACCATTATATGAATTTACAAGTCATAAAAATG
507 TTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1168837 ACATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
571 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
1168902 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACTCGTCCGTCCGCCCACCTGCTCGTTC
636 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-C-CG--C--CCGCCCGCCTG-TCGTTT
* * *
1168967 CGTCGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCAAGGGTTGC
692 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-AAGGGTTGC
* * * * * *
1169031 GGCAGCAGGATCGGTAGCATGCAGAGGTGGACCCGACCGATCCCCGGGTT-CTACATCCCGCCCC
756 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGC-GCATCCCGCCCC
* * * * *
1169095 TCTGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGCTCATTCCC
820 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
1169160 AGTCTAA
885 AGTCTAA
* * * ***
1169167 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGCCGAGGGTTGCTATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* *
1169232 CTCGGGCATGTGCTGGTGCTGCATTTTTC-TCTACC-GAGGCCCCATCGTCGGAGCATCACCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCAG-GGCACCA---TC---G--T---CGGA
* * * *
1169295 GAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGAGGGGTCCGGGGGGGGTGTGCGCACATGAT
118 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGAT
*
1169360 GTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGCA-AAC
181 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAAC
1169424 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
245 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
1169489 AAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTC
310 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-
* * * * * * *
1169553 TTTTGTGCATGCCAAGAAAAATACAAGGATCACATATGCCAAGTTT-GGCCCAAAAATCCTTTCG
374 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
1169617 AAGAAATTTTAAAAAATCTCGAACCACAAAAAATTTTGAAAATCCTGAAAAATAGAAAACGAGTC
439 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
* *
1169682 TTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CACATTGTATGAGTTTACAAGCCATAAAA
504 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC-CATTGTATGAATTTACAAGCCATAAAA
** *
1169746 ATGTAATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
568 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
1169811 CTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCTGTGCGCCCGCCCGCCCG-CTTGTTC
633 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC----CGCCCGCCCGCCTGTCGT-TTC
* * * * * * * *
1169875 TTTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTAAGGTTTACG
693 -GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCG
* * * * * *
1169940 GTAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCTTGTGCATCCCACCCCTC
757 GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTC
* **
1170005 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCATAG
822 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
1170070 TCTAA
887 TCTAA
* * * * * *
1170075 GCATACGGAGTTCGTTCCCAGTCTATGATCGGATCAGAACGAA-GGTTACGACAGCACATGCTCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAGGGTTGCGGCAGCACATGCT-G
* * *
1170139 ACGCTAGCAGGGC-TGGTGCTGGTGCTGCATTTTTCTCCGTTGGGGCACCATCGTCGG-AGCATC
64 -GGCT--C-GGGCAT-GTGCTGGTGCCGCA-TTTT-T-C-TT----CACCA--G--GGCACCATC
* * * * * *
1170202 GTCGGAGAACCTGATCGGTGGCATTGGGGTTCCCG-CAATCGGGCGTGTCGGGGGGTGT-C-CAC
112 GTCGGAGAACCTGACCGGCGGCATTGGGGTT-CCGACGATCGGGGGGGCCGGGGGGTGTGCGCAC
*
1170264 GGATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
176 --ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
1170329 GAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC---AGCCATTAAAG
239 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
1170391 TGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTG
304 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
1170456 ATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTT-GGACCTAAAACT-
369 AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTC
** * * ** ** * *
1170519 CTTTTGAAAAAAATTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATTAAGAAAAATAGAAAA
433 CTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
* * * *
1170584 TGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCACTGTATGAATTTACAGGCCA
498 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * **
1170649 TAAAAATGGCATTGGCATGCAGAAATATGAAGATATGTCTAAACCCACCTAGTACCCTATCGATC
563 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
1170714 CACGGCTTGCGCGTCCCATCTCTCTGGCTGACGTAGTGCCGCCTGCCCGCCCGCCCGCTTGCCTG
628 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C-CC-GCCCGCCCG-CC-C--GCCTG
* * * * *
1170779 CTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAAACCAAG
686 -TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAG
*** * * * * * ** * * * *
1170844 GGTTGCAAAAGCAAGATCGGCAGCACACAAAAGGGGACCTGGGCGTTCCCCGACTTGCGCATCCT
750 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCC
* * * * * *
1170909 GCCCCTCTAGCCGACAGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCA
815 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
1170974 TTCCCAGTCTAA
880 TTCCCAGTCTAA
* * *** * *
1170986 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAAATGACGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** *
1171051 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGG------CACC-----ATCGTCGGAGA
* * * *
1171116 ACCTGACCGACGGCATTGGGGTTTCGACGATC--GGGGGCCGGGGGGTGTGCGCACTTGATGAGC
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1171179 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1171244 CCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATG
250 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
1171309 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTT-
315 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTG
* * *
1171373 TGCATGCC-AACAAAACACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCC-AGAAA
379 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA-AAA
* * *
1171436 AATTTGAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCT
443 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
1171501 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * **
1171566 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCCATGACCCTATCGATCCACGGCTTGC
573 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1171631 GCATCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCGCCCG-C--TCGTTTTGTCGGTTGGC
638 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGTCGTTTCGTCGGTTGGC
* * * *
1171689 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGCAGGATT
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATC
* ** * * * *
1171754 GGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTACGCATCCCACCTCTCTGGTCGGCTGA
768 GGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
1171819 GCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
1171878 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
1171943 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCAGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCA---TC---G--TCG--G-AGA
* * * *
1172008 ACCT-ATCCGACGGCATTGGGGTTCTGACGATCGGGGGGGTCGGAGGGGTGAGCGCACATGATGT
120 ACCTGA-CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGT
*
1172072 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1172137 CACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
1172202 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTG
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * ** ** * * *
1172267 GTGCATGCCAACAAGAATACAAGGATCA-TTGTATGAA-TTTACAAGGCATAAAAATGGCATTAG
378 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT--GGGGC-CAAAACT--CCTT--
* * * * ** ** *** ******* * **** * **
1172330 CACGCAGAAATATGAAGAAGTTCCTAAACC-CACCTA--CCACCCTATCGATCCACGGCTTGCGC
436 C-CGAAAAAATTTTAA-AAAATCCCGAACCGCAAAAAGTTTTGAAAATC-AT-GAAAAATAG-AA
* ** ** * * * *** ****** * * *
1172392 ATCCCGTC-TCTCTAGCCGGCGTAA-TCCCCGCCTGCCCGCCCGTCCG-CTCGTT-TCGTCAATT
496 AACGAGTCGTCT-T-GCC-ATGAAACTTCACG--TGAAGGCTTAAGGGAC-CATTGT-ATGAATT
** * * *** ** * ** *
1172453 GGCTTAGGCATACGGA-GTGCATTCCCA-GTCTA-AGATCGGACAGGATTGAGGGTTGCGACAAC
554 TAC-AAGCCATAAAAATG-GCATTGGCACG-C-AGAAATATGA-A-GA-T----G-TGC--CTA-
* ** * * * *
1172515 AGGATCGACAGCACACAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCCG-C-CCCT--CA
604 A--A-C--C--CAC-C-TA---CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
** ** * * * * * *
1172576 GGC--AG-G-TTGAACGCTCGCACG-C--TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
657 GGCGTAGTGCCCGCCCGCCCGCCCGCCTGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * ** * * * * *
1172634 TCCCAGTCTAAG--CATA-CGAAGT---TCTTTC-CCAGTCTAAGATCGGACTGGAC-C-GAGGG
722 TCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAG-C-AGGATCGG-CAGCACGCAGAGGG
** * * * * ** * * * * **
1172690 TTA--CG-GC-AGCACAT-GC-TGGGC-T--CG-GGC-AT-G--TGCTG-GTG-CCGCA--TTTT
784 GGACCCGACCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * * * * * ***
1172737 TCTTCGCTAGGG--CAC-CA-TCGT-CGGAG--CATTGCC-GGAGAA
848 T-TTCG-T-GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *** * * ** * ** * *
1172776 -CCTGACCGACG-GCATT-GGGGTTCCGATGATCGG--GGGGCCGGGGGGGTG-TGC-GCACATG
1 GCAT-ACGGA-GTTCATTCCCAG-T-CTAAGATCGGACCAGACC-AAGGGTTGCGGCAGCACATG
* * * * * * ** * **** * ** *
1172834 GTGTGCGTGGGTGC-TGGTACTTG-GCC-C-TTATATCGGCCCCCTATCCCTCATCAAACCTTGA
61 CTGGGC-TCGG-GCAT-GTGCTGGTGCCGCATT-TTTCTTCACCAGGGCAC-CATC--GTC-GGA
** ** ** * * * * * ** * *
1172895 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGTTGCCAGTAGCCATTAAAGT
118 GAAC-CTGACCGGC-----G-GCA-TTG-G-GGTTCCGACGATCG--G--GGGGGCC-----GGG
** * * * * * * * * ***
1172959 GTCTGAAATGGGGACAAT-TTTTTCAAAT-GGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCT
164 GGGTG---TGCGCAC-ATGATGTGC-GATGGGT-------GCTGGT--ACTT-G-GCCCTTA--T
*** ** * * ** * ****
1173022 GAATT-G--TTTTAGGCATGCCAACAAAAATACAAGGATCACGTCTAC-CAAGTTTGGGGCCAAA
211 --ATTGGCCCCCTATCCCT--CATCAAACCT-CGA-GA--AC-TC-ACACCCCCTT------AAA
* * * * * **** * * * * * *
1173083 AATCCTTTAAAAAAATTTTTA-AAAAAT-C--CC-GAACCGCA-AAAAGT-TTTGAAAATCGTGA
260 GAGCATTT---GAGA-TTTTACAGGTTTGCTGCCAGTAGC-CATTAAAGTGTCTG-AAATGGGGA
*** *** * * ** * *
1173141 -A-AAATAGAAAAGGAGT--C---ATCTTGCCACGAAACTTAACGTGAAGGCTTAAG-GGACCAT
319 CACTTTTTTCAAATG-GTCACAAAATCTTG-TAC---ACTT--C--G-AGTTTTTAGCTGA--AT
* * * * * * **** ** * *
1173198 TGTATGAATT-TACAAGCC-ATAAAAATGGCATTGGCATGCAAAAATATAAAG-AT-GTGCCTAA
372 T-T-T--TTTGTGCATGCCAAAAAAAAT-ACA-AGG-AT-CACGTCTACCAAGTTTGGGGCC-AA
* * * *** * ** * * * *** **** *
1173259 ACCAACCTACC---ACCCTATCGATACA--CGGCTTGCGCATCCCGTCTCTCTG---GTC--G--
428 AAC-TCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGT-T-T-TGAAAATCATGAA
** **** ** * * * ** * *
1173312 GCATAGTGCCCG-CCCGTC-CG-C-TCG---TTTCGTCG-GTTGGCTT-A-GG--CATACGGAGT
488 AAATAGAAAACGAGTCGTCTTGCCAT-GAAACTTC-ACGTGAAGGCTTAAGGGACCAT-TGTA-T
** * * * * * *** * * *
1173365 TCA-TTCCCAGTC-TAAGATTGGACCAGATTGATGGTTGC-G--GTA-GCAGGATCG-G--TAGC
549 GAATTTACAAGCCATAAAAATGG--C--ATTG--GCACGCAGAAATATG-AAGAT-GTGCCTA-A
** ****** * * * * * * ** *
1173421 ATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGGATCCCGCCCCTCTACCCGG-TTGAGTGCC
605 ACCCA-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-AGTGCC
** * *** * * * * ** *
1173485 CGTACGCTCG-TTTCATGGTTGACTTAGGCATACGGAAGTTCATTCCAGTCTAAGCATACGGAGT
668 CGCCCGCCCGCCCGCCT-GTCG--TT--TCGT-C-G--G-T--TGGC--T-TAGGCATACGGAGT
* * * ** * * **
1173549 TCATTTCACAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCA-CATGCTGG--GCTTGGGC
718 TCA-TTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGAT-C-GGCAGC--ACGC
* * ** **** ** * * * *** *
1173611 ATGTGCTGGTG-CCATATTTTTCTTTGTC-AGAGCATCGCCGAAGAACCGGACTGG-CGGCATTA
778 A-GAG--GGGGACCCGACCGATCCCTGGCTTGCGCATC-CC---G--CCCCTCTGGCCGGC-TGA
* * * * *** * ** ** * ** * * * **
1173673 GGGTTCTG-ACGATCG-GAGGGGCCGGGGGGGTGT-GCGCACATGGTGTGCAATGGGTGCTGGTA
833 GCG-CCCGCACGCTCGTTTCGTG--GGTTGACT-TAG-GCATACAGAGTTC-AT---TCCCAGT-
**
1173735 CTTG
888 CTAA
* *** * * ** * *
1173739 GCCCTTATATTGG-CCCCCTATCCCTTA-TCAAACCTCCAGAACTCACACCCCCTTAAAGAGCGT
1 G--C--ATA-CGGAGTTCAT-TCCC--AGTCTAAGAT-C-GGAC-CAGA---CC---AAG-G-GT
** * ** * * * * ** *
1173802 T-CGAG-ATTTTACAAG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG-GGGACAGTTTTT
47 TGCG-GCA--GCACATGCTGGGCT--C-G--GGCA-T---GTG-CTG--GTGCCGCA-TTTTTCT
* * *** ** * * * ** ** * ******** * * ***
1173863 TCA-AATGGTCA-CAAAATC-TTGTACACT--TC--CAGTTTTTAGCTGAATTTTTTTGTGCACG
96 TCACCA-GGGCACCATCGTCGGAGAAC-CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
******** * * * ** * ** ** * * ** ** ****
1173921 CCAAAAAAAAT--ACA-AGGA--T-C-ACGTCTACCAAGT--TTGGGGCTAAAACACGTTCGAAA
159 CCGGGGGGTGTGCGCACATGATGTGCGATGGGT-GCTGGTACTTGGCCCTTATA-TTGGCCCCCT
**** ** * ** * * ***** * * *** * *** *
1173977 AAAAGTTTTAAAAATATCGA-ACCGCA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG-T
222 ATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACA-G-GTT
* * * * * * * * * *
1174039 CGTCTTGCCATGAAACTTCACGTGAAG-G-CT-TAA--GGGAC-CATTGTAT-GAAT--TTAC-A
283 TG-C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAA
** * ** ** * *** * * * ** ** *
1174094 AGCCATG-A-AAAT-G-G-CATTGGCATGCAA-AAATATGAAGACGTGCCTAAACCCACCTGC--
341 AATCTTGTACACTTCGAGTTTTTAGC-TG-AATTTTTTTG-TG-CATGCC-AAA-AAAAATACAA
* ** * * * * **** * **** * **** * **
1174151 TGCCCTATCG-GT-CCACGGCTT-GCGCATCCTGTCTCTCTGCCCG-GTGTAGTGCCCACACGCC
400 GGATC-A-CGTCTACCA-AGTTTGGGGC--CAAAACTC-CT-TCCGAAAAAATTTTAAAAAATCC
* ***** * **** *** * * *
1174212 CG-TCCGCCCGCTCGTTTCGTCGGT--TG--GCTTAGGCATACGGAGT--TCATTCCCA-GACCA
458 CGAACCG-CAAAAAGTTTTGAAAATCATGAAAAATA-GAAAAC-GAGTCGTC-TTGCCATGA--A
** * * ** * * * * * *
1174269 AGATCGGACCG-GACCGAGGGCTGCTGTA-GCAGGATTGGCA-GCATGTAGAGGGGGACCCA-AT
517 ACTTC--A-CGTGA---A-GGCT--T-AAGGGACCATT-GTATGAATTTACA-----AGCCATAA
* * *** * ** * * *
1174330 CAATCCCCGGC-TTGCGCATCTC-GCCCCTCTG--GCCG-G-CTGAACGCC-CGC-ACGC-TCAT
566 AAAT----GGCATTG-GCA-CGCAG-AAATATGAAGATGTGCCTAAAC-CCAC-CTAC-CACCCT
* * ** * * * * *
1174386 TTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTCTCTGGTCGGCATAGT----GCCC
621 ATC---GATCCAC---GGC-T--TGCG--CA-TCCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCC
**
1174447 GCCCGCCCG-C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
673 GCCCGCCCGCCTGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
1174509 GACC-AGATTGACGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCC-AGCCGATCCCC
738 GACCGA-ACTAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCT
* * * * *
1174572 GGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAG
801 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
1174637 GCATACGGAGTTCATTCCTAGTCTAA
866 GCATACAGAGTTCATTCCCAGTCTAA
* * * *
1174663 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
1174728 CTTGGGAATGTGCTGGTGCCATATTTTTCTTCACC-GGAGCATCA-C--CGAAGAACCTGACCGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGG-GCACCATCGTCGGAGAACCTGACCGG
* * *
1174789 ACGGCATTGGGGTTCCGGCGATC-GGGGGG-CGGGGGGTGTGCGCACATGGTGTGCAATGGGTGC
130 -CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
1174852 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAA
194 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * *
1174917 AGAGCGTTCGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1174982 TTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTTGTGCATGCCA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCA
* * *
1175047 AAAAAAATACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACACGTT-CGAAAAAAAGTTTT-A
388 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAA-TTTTAA
** ** *
1175110 AAAATTTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
451 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
1175175 AACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCAT
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * **
1175239 GCAAAAATATGAAGATGTGCCTAAACCCACCTGCTGCCCTATCGATCCACGGCTTGCGCATCCCG
581 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * **
1175304 TCTCTCTGCCCGGCGTAGTGCCCGCACGCCCGTCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCA
646 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCTGTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** * * * *
1175369 TACGGAGTTCATTCCCAGACCAAGATCGGACCGGACCGAGGGCTGCTGTAGCAGGATTGGCAGCA
710 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * *
1175434 TGTAGAGGGGGACCCAACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCG
775 CGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
1175499 CACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAA
840 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
1175551 GCATATGGAGTTAATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAACACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* *** ** *
1175616 CTCGAGCATGTGCTGGTGCCATTTTTTTCTTCGTCGGGGCACCATCTCCAGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCA--T-C---G--TCG--G-AGA
* ** * *
1175681 ACCTGATCGGCGGCATTGGGGTTCCGGTGATCGGGTGGGCCGGGGTGGTGTGCGCACATGGTGTG
120 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTG
* *
1175746 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1175811 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGACAT
249 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1175876 GGGAACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTCTTA
314 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1175941 TGCATGCCAACAAAAATACAAGGATCACGTCTACCATGTTTAGGGCCAAAACTCCTTTC------
379 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
1176000 A----AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCCT
444 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
1176061 GCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
509 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1176126 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
574 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1176191 CATCCCATCTCTCTGGCCGACGTAGT----GCCCGCCCGCCC-AC--TCGTTTCGTCGGTTGGCT
639 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGTCGTTTCGTCGGTTGGCT
* * * * * *
1176249 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGTC-ACAGTAGGATC
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTG-CGGCAGCAGGATC
* * * *
1176313 GGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGA
768 GGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
1176378 GTGCCCGCACGCTCTTTTCGTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAA
833 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
1176437 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAGTACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** ** * *
1176502 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTC---GCAGCATCGTCGGAGAACCTGACTGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGAACCTGACCGGC
* ** *
1176564 GGCATTGGGGTTCCGGCGATC-GGGGGGATGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTG
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
1176628 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
1176693 AGCCTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGTACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
1176758 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCACGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * ** *
1176823 AAAATACAAGGATCACGTCTACCAAATTTGGTGCAAAAACAACTTCCAAAAAAATTTTAAAAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** **
1176888 TCTAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
1176953 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGTATGCAGA
521 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * * *
1177018 AATATGAAGATGTGCCTAAACCCACCTGCCGCCCTATCAATCCACGTCTTGCGCATCCCGTCTCT
586 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * * * *
1177083 CTGGCCGTCGTAATGCCCGCACGCCCACCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCAAACGG
651 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTG-TCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * ** * ** * * * *
1177148 AGTTCATTCCCGGACCAAGATCGGACCGGACCGAGGGCTGCTACAGTAGGATCGGTAGCATGTAG
715 AGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * *
1177213 AGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGA
780 AGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
1177278 TCATTTCGT-GG--G---T-----T-----G---A----C--T-TAA
845 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1177299 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
*** *
1177364 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGAACCTGACCGGC
* ** *** * * * * *
1177429 GGCATTGGGGTTCCGACGATTGGGTGTACGCC-CATGATCTGCG-ATA-GGTGCTG-GTACTTGG
131 GGCATTGGGGTTCCGACGATCGGG-G-GGGCCGGGGGGTGTGCGCACATGATG-TGCG-A-TGGG
** **
1177490 CCCTTATA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
191 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
1177554 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTATCCGAAATGGGGTCA
256 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
1177619 C-TTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGG
321 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
1177683 CAAAAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAA
386 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * *
1177748 AAAATCCCAAACCGCAAAAAG-TTAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTA
451 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
1177812 AACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTC
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * * ** **
1177877 ATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATCCACGGCTTGTTCATCCTT
581 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * ** *
1177942 TCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
646 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTG-TCGTTTCGTCGGTTGGCTTAGGCA
* ** * ** ** *
1178007 TACGAAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGCATTGCGGCAGC-GAGATCGACAG
710 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTAAGGGTTGCGGCAGCAG-GATCGGCAG
* * * * *
1178070 CA--CATGAAGGGGGACCCGATCGATCCCCGTCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTG
773 CACGCA-G-AGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
1178133 CCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * ** * * * *
1178189 GAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGCTTACGACAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1178254 CTCGGGCATGTGCTAGCGCCACATATTTCTTCGCC-GAGGCACCATCGCCGGAGCATCGCCGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAG-GGCACCAT---C---G--TCG--GAGA
* * * *
1178318 ACCTGACCGACGACATTGGGGTTTCGGA-GATCGAGGGGGCCAGGGGGGTGTGCGCACATGATGT
120 ACCTGACCGGCGGCATTGGGG-TTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
1178382 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1178447 CACCTCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1178512 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1178577 TTGCATGCCAACAAAAATAGAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTT-CGAAAA
378 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* ** * ** *
1178641 AATTTTTGAAAAATCTAGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
443 AA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
1178706 TTGCCATCAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1178771 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTG
572 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *** * *
1178836 CGCATCCCGTGTCTCTGGCTGGCGTAGTACCCACCCGTCCGTTTGCCCGCTTGTTTCGTCGGTTG
637 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTG-TCGTTTCGTCGGTTG
* * *
1178901 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGGAAGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGA
** * * * * * * * *
1178966 TCGATAGAACGCAGAGGGGGACCTGATCGATCCCCGTCTTACGCATCCCGCCCCTCTGGCTGACT
766 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
1179031 GAGCGCCCACACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * *
1179092 GCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGAACTGAGGGTTACGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCAAGGGTTGCGGCAGCACATGCTGG
* * * ** * *
1179156 GGTCGGGCATATGCTGGTGTCATATTTTTCTTCACCGGGGAACCATCCCCGGAGCATCGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCAT---C---G--T--C-GGAG
* * * *
1179221 AACCTGACCGGCTGCATTAGGGTTCCGACGATCTGGGGGGCCGGGGGGGTGTGCGCACAAGATGT
119 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
1179286 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
1179351 CACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTAGCTGCCAGTAGCCATTAGAGTGTCTAAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1179416 TGGGGACA-TTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TTTTT
313 TGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
1179479 T-T--ATG------------C----AT---G----CCAAGTTTGGGGCCACAACTCCTTCTGAAA
377 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* **
1179518 AAATTTTAAAAAAT------CCTCAAAAA-TCGTGAAAA--A-G----AT--AAAACGAGTCGTC
442 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
1179567 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGACATAAAAAAGG
507 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1179632 CATTGGCACACAGAAATATAAAGATGTGCCTAAACCCGCCTACCACTCTATTGATCCACGGCTTG
572 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1179697 TGCATCCCGGCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCACCCACCCGCTCGTTTCGTCGGTTG
637 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTG-TCGTTTCGTCGGTTG
* * * * * *
1179762 GCTTAGGCTTACGGAGTTCATTCCCAATCTAAGATCGGATCGGACTGAA-GGTTGCGACAGCAGG
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-AAGGGTTGCGGCAGCAGG
** * * * * * ** * *
1179826 ATCGATAGCACGTAGAGGGGGGCCCGATCGATCCCCGTCTTAAGCATCCCGCCCCTTTGGCCGGT
765 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1179891 TGAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1179949 -C-TA---AG---ATT----G-----GAT-----CAGACCAAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
** ** * * * *
1179992 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGAAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGAACCTGACCGGC
* * * * * * **
1180057 GGTATTAGGGTACTGGCAATCGGGGGGGCCAAGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
1180122 GTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
1180187 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTTAAGTGTCTGAAATGCGGACACTATT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
1180252 TTCAAATGGTCACAGAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCC-AAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* ** * *
1180316 AAAATA-AAAGATCACGTCTACCAAGTTTGGGGTGAAAACTTCTT-CGAAAAAATTTTAACAAAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* ** * * * *
1180379 CCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGTCTTCCCATGAAACTT
456 CCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * *
1180444 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCATGCAAA
521 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
1180509 AATATGAAGAAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCT
586 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * ** *
1180574 CTGGCCGACGTATTGCCCACCCATCCGCCCG-C--TCGTTTCGTCGGTTGGCTTAGGCATAGGGA
651 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * ** * * *
1180636 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAAA
716 GTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* **** * *
1180701 GGGGGACCCGAACGATCCCCAATTTGCGCATCCCACCCGTCTGGCCGGCTGAGCGCCCGCACGCT
781 GGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
1180766 CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCATTCTAA
846 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** * ** *
1180812 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATTAGACCGAGGGTTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** * *
1180877 CTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCTGAGGCACCATCGTCGG-AGCATCGTTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTC-T---T----CACCA--G--GGCACCATCGTCGGAG
* * * * * * *
1180941 AACCTGACCGGCGGCTTTAGGGTTTCGGCGATCGGTGGGGTCGCGGGGGTGTGCACACATGATGT
119 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* * *
1181006 GCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCAAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1181071 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAA
248 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1181136 TGAGGACACTTTTTTCAAATGATCACAAACTCTTGTACACTTCGAGTTTTTAGCTGAAATATTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTT
* * * *
1181201 TGTGCATGCCAACAAAAATACAAGGATCAGGTCTAATC-AGTTTGGGGCCAATA-TGCCTTCCGA
377 TGTGCATGCCAAAAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACT-CCTTCCGA
* *
1181264 AATAATTTTAAAAAATCCCAAACCG
440 AAAAATTTTAAAAAATCCCGAACCG
1181289 TCTTACCATG
Statistics
Matches: 13887, Mismatches: 2523, Indels: 2072
0.75 0.14 0.11
Matches are distributed among these distances:
823 188 0.01
824 48 0.00
825 2 0.00
827 3 0.00
829 1 0.00
832 1 0.00
835 64 0.00
836 2 0.00
840 3 0.00
841 2 0.00
844 1 0.00
845 2 0.00
847 18 0.00
848 21 0.00
849 4 0.00
850 3 0.00
852 5 0.00
853 8 0.00
854 5 0.00
855 6 0.00
856 4 0.00
857 2 0.00
858 2 0.00
859 174 0.01
860 4 0.00
861 348 0.03
862 97 0.01
863 174 0.01
864 344 0.02
865 204 0.01
866 180 0.01
867 329 0.02
868 145 0.01
869 15 0.00
870 381 0.03
871 29 0.00
872 39 0.00
873 114 0.01
874 455 0.03
875 460 0.03
876 44 0.00
877 46 0.00
878 13 0.00
879 33 0.00
880 327 0.02
881 15 0.00
882 8 0.00
883 12 0.00
884 35 0.00
885 62 0.00
886 282 0.02
887 175 0.01
888 431 0.03
889 20 0.00
890 122 0.01
891 125 0.01
892 966 0.07
893 116 0.01
894 177 0.01
895 240 0.02
896 266 0.02
897 235 0.02
898 97 0.01
899 142 0.01
900 626 0.05
901 228 0.02
902 258 0.02
903 660 0.05
904 574 0.04
905 174 0.01
906 136 0.01
907 645 0.05
908 760 0.05
909 52 0.00
910 29 0.00
911 342 0.02
912 153 0.01
913 375 0.03
914 90 0.01
915 17 0.00
916 19 0.00
917 12 0.00
918 18 0.00
919 32 0.00
920 36 0.00
921 26 0.00
922 19 0.00
923 24 0.00
924 25 0.00
925 23 0.00
926 79 0.01
927 19 0.00
928 20 0.00
929 22 0.00
930 41 0.00
931 27 0.00
932 22 0.00
933 26 0.00
934 19 0.00
935 16 0.00
936 20 0.00
937 35 0.00
938 15 0.00
939 41 0.00
940 38 0.00
941 11 0.00
942 3 0.00
943 7 0.00
944 16 0.00
945 8 0.00
946 8 0.00
947 4 0.00
948 6 0.00
949 13 0.00
950 12 0.00
951 8 0.00
952 4 0.00
953 1 0.00
954 7 0.00
955 4 0.00
956 1 0.00
957 10 0.00
958 3 0.00
959 2 0.00
960 5 0.00
961 15 0.00
962 3 0.00
964 1 0.00
966 1 0.00
967 4 0.00
968 6 0.00
969 2 0.00
970 1 0.00
972 3 0.00
975 2 0.00
976 6 0.00
977 2 0.00
978 2 0.00
979 1 0.00
980 2 0.00
981 2 0.00
982 4 0.00
983 4 0.00
984 2 0.00
985 1 0.00
986 2 0.00
987 1 0.00
988 4 0.00
989 2 0.00
990 4 0.00
992 2 0.00
993 1 0.00
994 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGAACTAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1167391 original size:26 final size:26
Alignment explanation
Indices: 1167354--1167406 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1167344 GTTGACTTAG
1167354 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1167380 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
1167406 G
1 G
1167407 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1169170 original size:26 final size:26
Alignment explanation
Indices: 1169141--1169193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1169131 GTTGACTTAG
1169141 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
1169167 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
1169193 G
1 G
1169194 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:1170097 original size:26 final size:26
Alignment explanation
Indices: 1170049--1170099 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1170039 GTTGACTTAG
*
1170049 GCATACAGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
* * *
1170075 GCATACGGAGTTCGTTCCCAGTCTA
1 GCATACAGAGTTCATTCACAGTCTA
1170100 TGATCGGATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:1170450 original size:908 final size:898
Alignment explanation
Indices: 1168254--1172294 Score: 5172
Period size: 908 Copynumber: 4.5 Consensus size: 898
1168244 GTTGACTTAG
* * * * *
1168254 GCATACGGAGTTCATTCCCTGTCTAAGATTGGATCAGATCGAGGGTTGCGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAGGGTTGCGACAGCACATGCTGGG
*** *
1168319 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * * *
1168384 ATTTGACCGACGGCATTAGGGTTCCGATGGTCAGGGGGGCTAGGAGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCG-CGATC--GGGGG-TCGG-GGGGTGTGCGCACATGATGT
* *
1168449 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCGAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1168514 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA--AGCCATTAAAGTGTCTGAAA
* * *
1168579 TGGGGACACTTTTTTCGAA-CGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTTT
** * * **
1168643 GTGCATGCTGACAAAAATAAAAGTATCACGTCTACCAAGTTTTAGGTGAAAAATCCTTCCGAAAA
383 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTAGGCCAAAAATCCTTCCGAAAA
* * * *
1168708 AATTTTAAAGAATCTCGAAACATAAAAAGTTTTGAAAATCATGAAAAATAGCAAACGAGTCGTCT
447 AATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * *
1168773 TGCCATTAAAACTTCACGTGAAGGCATAAGGGACCATTATATGAATTTACAAGTCATAAAAAT-G
512 TGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1168837 ACATTGGCATGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
576 A-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1168902 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACTCGTCCGTCCGCCCACCTGCTCGTTC
640 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG--C-CT-GTCCGCCCGCCCGCCCGCTCGTT-
* * * **
1168967 CGTCGGTTGCCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCAAGGGTTGC
699 TGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACT-AAGGGTTGC
* * ** * * * * *
1169031 GGCAGCAGGATCGGTAGCATGCAGAGGTGGACCCGACCGATCCCCGGGTT-CTACATCCCGCCCC
763 GACAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGC-GCATCCCACCCC
* * * * *
1169095 TCTGGCTGGCTGAGTGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGCTCATTCCC
827 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
1169160 AGTCTAA
892 AGTCTAA
** * *
1169167 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGGCCGAGGGTTGCTATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAGGGTTGCGACAGCACATGCTGGG
* * **
1169232 CTCGGGCATGTGCTGGTGCTGCATTTTTC-TC-TACCGAGGCCCCATCGTCGGAGCATCACCGGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGT--CGGGGCACCATCGTCGGAGCATCGTCGGA
* *
1169295 GAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGAGGGGTCCGGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCC-GCGATCG-GGGGT-C--GGGGGGTGTGCGCACATGAT
*
1169360 GTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGCA-AAC
189 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAAC
1169424 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
253 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA--AGCCATTAAAGTGTCTG
*
1169489 AAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTCT
316 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTT-T
* * * * *
1169554 TTTGTGCATGCCAAGAAAAATACAAGGATCACATATGCCAAGTTT-GGCCCAAAAATCCTTTCGA
380 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGG-CCAAAAATCCTTCCGA
* * * *
1169618 AGAAATTTTAAAAAATCTCGAACCACAAAAAATTTTGAAAATCCTGAAAAATAGAAAACGAGTCT
444 AAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
*
1169683 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CACATTGTATGAGTTTACAAGCCATAAAAA
509 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC-CATTGTATGAATTTACAAGCCATAAAAA
* *
1169747 TGTAATTGGCACGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
573 TGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
1169812 TTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCTGTGCGCCCGCCCGCCCGCTTGTTCTT
638 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCTGTCCGCCCGCCCGCCCGCTCGTT-TG
* * * *** * * **
1169877 TCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTAAGGTTTACGGT
701 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGCGAC
* ** * *
1169942 AGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCTTGTGCATCCCACCCCTCTG
766 AGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTG
* **
1170007 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCATAGTC
831 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
1170072 TAA
896 TAA
* * * *
1170075 GCATACGGAGTTCGTTCCCAGTCTATGATCGGATCAGAACGAAGGTTACGACAGCACATGCTCGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAGGGTTGCGACAGCACATGCT-G-
* * *
1170140 CGCTAGCAGGGC-TGGTGCTGGTGCTGCATTTTTCTCCGTTGGGGCACCATCGTCGGAGCATCGT
64 GGCT--C-GGGCAT-GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
* ** *
1170204 CGGAGAACCTGATCGGTGGCATTGGGGTTCCCGCAATCGGGCGTGTCGGGGGGTGT-C-CACGGA
125 CGGAGAACCTGACCGACGGCATTGGGGTT-CCGCGATCGGG-G-GTCGGGGGGTGTGCGCAC--A
*
1170267 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
185 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
1170332 AACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGCCATTAAAGTGTCT
250 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGCCATTAAAGTGTCT
* * **
1170396 AAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTT
315 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGA-TTT
* * **
1170461 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTT-GGACCTAAAA-CTCTTTT
379 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGG-CCAAAAATC-CTTCC
* * ** * * *
1170524 GAAAAAAATTTAAAAAATCTCGAACTACAAAAAGTTTCAAAAATTAAGAAAAATAGAAAATGAGT
442 GAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
* * *
1170589 CGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCACTGTATGAATTTACAGGCCATAAAA
507 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * **
1170654 ATGGCATTGGCATGCAGAAATATGAAGATATGTCTAAACCCACCTAGTACCCTATCGATCCACGG
572 ATGGAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
1170719 CTTGCGCGTCCCATCTCTCTGGCTGACGTAGTGCCGCCTGCCCGCCCGCCCGCTTGCCTGCTCAT
637 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCTGTCCGCCCGCCCGC---CC-GCTC-G
* *
1170784 TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCAAACCAAGGGTTG
697 TTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTG
* * * * * * * * * **
1170849 CAAAAGCAAGATCGGCAGCACACAAAAGGGGACCTGGGCGTTCCCCGACTTGCGCATCCTGCCCC
762 CGACAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCC
* * * * * *
1170914 TCTAGCCGACAGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATTCCC
827 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC
1170979 AGTCTAA
892 AGTCTAA
* * * * * **
1170986 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAAATGACGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAGGGTTGCGACAGCACATGCTGGG
** *
1171051 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
1171116 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGCCGGGGGGTGTGCGCACTTGATGAGCGA
131 ACCTGACCGACGGCATTGGGGTTCCG-CGATCGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
* *
1171181 TGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1171246 CCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA--AGCCATTAAAGTGTCTGAAATGGG
*
1171311 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTT-TG
323 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATT-TTTTTGTG
* * * *
1171375 CATGCCAAC-AAAACACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCCTTCC-AGAAAAA
386 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-AGGCCAAAAATCCTTCCGA-AAAAA
* * ** *
1171438 TTTGAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTG
449 TTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
1171503 CCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
514 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAAT
* * **
1171568 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCCATGACCCTATCGATCCACGGCTTGCGC
579 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
1171633 ATCCCGTCTCTCTGGCCGGCATAGT---G-C---CCGCCCGCCCGCTCG-T--TTTGTCGGTTGG
644 ATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCTGTCCGCCCGCCCGCCCGCTCGTTTGTCGGTTGG
*
1171688 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGACAGCAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGCGACAGCAGGAT
* * * * * *
1171753 TGGCAGCACACAGAGGGGGACCCGGTCGATCCCTGGCTTACGCATCCCACCTCTCTGGTCGGCTG
774 CGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * * *
1171818 AGCGCCCACAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1171878 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAGGGTTGCGA-CAGCACATGCTGG
* * * * * * *
1171942 GCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCAGGGCACCATCGTCGGAGCATCGCCGAAG
65 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
1172007 AACCT-ATCCGACGGCATTGGGGTTCTGACGATCGGGGGGGTCGGAGGGGTGAGCGCACATGATG
130 AACCTGA-CCGACGGCATTGGGGTTCCG-CGATC--GGGGGTCGG-GGGGTGTGCGCACATGATG
*
1172071 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1172136 ACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA--AGCCATTAAAGTGTCTGAA
*
1172201 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTT
318 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTT
* *
1172266 GGTGCATGCCAACAAGAATACAAGGATCA
382 TGTGCATGCCAACAAAAATACAAGGATCA
1172295 TTGTATGAAT
Statistics
Matches: 2745, Mismatches: 326, Indels: 131
0.86 0.10 0.04
Matches are distributed among these distances:
891 1 0.00
892 313 0.11
894 12 0.00
895 210 0.08
896 14 0.01
897 1 0.00
900 12 0.00
903 1 0.00
904 121 0.04
905 4 0.00
906 112 0.04
907 312 0.11
908 575 0.21
909 14 0.01
910 9 0.00
911 340 0.12
912 157 0.06
913 458 0.17
914 78 0.03
915 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAACGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGCGATCGGGGGTCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGCCAAAAATCCTTCCGAAAAAATTTTAAA
AAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCGCCTGTCCGCCCGCCCGCCCGCTCGTTTGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGCGACAGCAGGATCGGCAGC
ACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1170996 original size:26 final size:26
Alignment explanation
Indices: 1170960--1171012 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1170950 GTTGACTTAG
*
1170960 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1170986 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1171012 G
1 G
1171013 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1171888 original size:26 final size:26
Alignment explanation
Indices: 1171852--1171904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1171842 GTTGACTTAG
*
1171852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1171878 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1171904 G
1 G
1171905 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1172649 original size:26 final size:26
Alignment explanation
Indices: 1172619--1172671 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1172609 GTTGACTTAG
1172619 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
*
1172645 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1172671 G
1 G
1172672 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1173542 original size:26 final size:27
Alignment explanation
Indices: 1173512--1173565 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
1173502 GTTGACTTAG
1173512 GCATACGGAAGTTCA-TTC-CAGTCTAA
1 GCATACGG-AGTTCATTTCACAGTCTAA
1173538 GCATACGGAGTTCATTTCACAGTCTAA
1 GCATACGGAGTTCATTTCACAGTCTAA
1173565 G
1 G
1173566 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 6 0.23
26 11 0.42
27 9 0.35
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (27 bp):
GCATACGGAGTTCATTTCACAGTCTAA
Found at i:1174026 original size:882 final size:884
Alignment explanation
Indices: 1172293--1174426 Score: 2924
Period size: 882 Copynumber: 2.4 Consensus size: 884
1172283 ATACAAGGAT
* * * * *
1172293 CATTGTATGAATTTACAAGGCATAAAAATGGCATTAGCACGCAGAAATATGAAGAAGTTCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAAGTGCCTAAA
* *
1172358 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAATCCCCGC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC---AT---AG-
** *
1172423 CTGCCCGCCCGTCCGCTCGTTTCGTCAATTGGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGA
124 -TGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** * * **
1172488 TCGGA-CAGGATTGAGGGTTGCGACAACAGGATCGACAGCACACAGAGGGGGACCCGATCGATCC
188 TCGGACCA-GATTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCC
* * *
1172552 TCGGCTTGCGCATCCCGCCCCTC-AGGCAGGTTGAACGCTCGCACGCTCGTTTCATGGGTTGACT
252 CCGGCTTGCGCATCCCGCCCCTCTA-GCCGGTTGAACGCCCGCACGCTCGTTTCATGGGTTGACT
* *
1172616 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCTTTCCCAGTCTAAGATCGGACTG
316 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCTTTCACAGTCTAAGATCAGACTG
* *
1172681 GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCTA
381 GACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTC-CT-
* * * * * *
1172746 GGGCACCATCGTCGGAGCATTGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGG
444 -------ATCGTCAGAGCATCGCCGAAGAACCGGACCGACGGCATTAGGGTTCCGACGATCGGGG
*
1172811 GGCCGGGGGGGTGTGCGCACATGGTGTGCGTGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCT
502 GGCCGGGGGGGTGTGCGCACATGGTGTGCATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCT
** * * *
1172876 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTT
567 ATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAAGTTTGCT
1172941 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCAAAAAATCTTGTACA
632 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCAAAAAATCTTGTACA
* * *
1173006 CTTCGAGTTTTTAGCTGAATTGTTTTAGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
697 CTTCCAGTTTTTAGCTGAATTGTTTTAGGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * **
1173071 TTTGGGGCCAAAAATCCTTTAAAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAAT
762 TTTGGGGCCAAAAATCCTTGAAAAAAAGTTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAAT
* *
1173136 CGTGAAAAATAGAAAAGGAGTCATCTTGCCACGAAACTTAACGTGAAGGCTTAAGGGAC
826 CATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTAACGTGAAGGCTTAAGGGAC
* *
1173195 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTGCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAAGTGCCTAAA
* * *
1173260 CCAACCTACCACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
*
1173325 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCA
131 CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * *
1173390 GATTGATGGTTGCGGTAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
196 GATTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * ** * *
1173455 GGATCCCGCCCCTCTACCCGGTTGAGTGCCCGTACGCTCGTTTCAT-GGTTGACTTAGGCATACG
261 GCATCCCGCCCCTCTAGCCGGTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
*
1173519 GAAGTTCATT-CCAGTCTAAGCATACGGAGTTCATTTCACAGTCTAAGATCAGACTGGACCGAGG
326 G-AGTTCATTCCCAGTCTAAGCATACGAAGTTC-TTTCACAGTCTAAGATCAGACTGGACCGAGG
* * *
1173583 GTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTG-C-CATATTT-TT-CT-TTGTCAGAG
389 GTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCCTATCGTCAGAG
* * *
1173643 CATCGCCGAAGAACCGGACTGGCGGCATTAGGGTTCTGACGATCGGAGGGGCCGGGGGGGTGTGC
454 CATCGCCGAAGAACCGGACCGACGGCATTAGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGC
* *
1173708 GCACATGGTGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC
518 GCACATGGTGTGC-ATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACC
*
1173773 TCCAGAACTCACACCCCCTTAAAGAGCGTTCGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
582 TCCAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAA
* *
1173838 AGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGC
647 AGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCAAAAAATCTTGTACACTTCCAGTTTTTAGC
* *
1173903 TGAATT-TTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAC
712 TGAATTGTTTTAG-GCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-
*
1173967 A-CGTTCGAAAAAAAGTTTTAAAAATAT-CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
775 ATCCTT-GAAAAAAAGTTTTAAAAA-ATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* * *
1174030 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
838 AAAACGAGTCATCTTGCCACGAAACTTAACGTGAAGGCTTAAGGGAC
* *
1174077 CATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAAAAATATGAAGACGTGCCTAAA
1 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAAGTGCCTAAA
* ** * * * **
1174142 CCCACCTGCTGCCCTATCGGTCCACGGCTTGCGCATCCTGTCTCTCTGCCCGGTGTAGTGCCCAC
66 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C-C
* *
1174207 ACGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACCAAGA
128 -CGCCCGT----CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * * *
1174272 TCGGACCGGACCGAGGGCTGCTGTAGCAGGATTGGCAGCATGTAGAGGGGGACCCAATCAATCCC
188 TCGGACCAGATTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCC
* * * * *
1174337 CGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTA
253 CGGCTTGCGCATCCCGCCCCTCTAGCCGGTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTA
*
1174402 AGCATACAGAGTTCATTCCCAGTCT
318 GGCATACAGAGTTCATTCCCAGTCT
1174427 CTCTGGTCGG
Statistics
Matches: 1094, Mismatches: 118, Indels: 51
0.87 0.09 0.04
Matches are distributed among these distances:
880 45 0.04
881 36 0.03
882 412 0.38
883 17 0.02
884 3 0.00
885 1 0.00
886 7 0.01
889 2 0.00
890 155 0.14
891 26 0.02
892 6 0.01
893 40 0.04
894 230 0.21
895 3 0.00
896 1 0.00
899 2 0.00
902 108 0.10
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (884 bp):
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGAAGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGC
CCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
GATTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
GCATCCCGCCCCTCTAGCCGGTTGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACA
GAGTTCATTCCCAGTCTAAGCATACGAAGTTCTTTCACAGTCTAAGATCAGACTGGACCGAGGGT
TACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTCTTCCTATCGTCAGAGCA
TCGCCGAAGAACCGGACCGACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCA
CATGGTGTGCATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCCA
GAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACAATTTTTTCAAATGGTCAAAAAATCTTGTACACTTCCAGTTTTTAGCTGAA
TTGTTTTAGGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
GAAAAAAAGTTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
TCATCTTGCCACGAAACTTAACGTGAAGGCTTAAGGGAC
Found at i:1174630 original size:234 final size:234
Alignment explanation
Indices: 1174209--1174660 Score: 652
Period size: 234 Copynumber: 1.9 Consensus size: 234
1174199 GTGCCCACAC
*
1174209 GCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACCAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACCAAGATC
* * * * * * *
1174274 GGACCGGACCGAGGGCTGCTGTAGCAGGATTGGCAGCATGTAGAGGGGGACCCAATCAATCCCCG
66 GGACCAGACCGACGGCTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATCCCCG
* * *
1174339 GCTTGCGCATCTCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAAG
131 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACACTCATTTCATGGGTTGACTTAAG
1174404 CATACAGAGTTCATTCCCAGTCTCTCTGGTCGGCATAGT
196 CATACAGAGTTCATTCCCAGTCTCTCTGGTCGGCATAGT
* * *
1174443 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACCAAGATC
** * * * *
1174508 GGACCAGATTGACGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAGCCGATCCCCG
66 GGACCAGACCGACGGCTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATCCCCG
* * ** * *
1174573 GCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGG
131 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACACTCATTTCATGGGTTGACTTAAG
* *
1174638 CATACGGAGTTCATTCCTAGTCT
196 CATACAGAGTTCATTCCCAGTCT
1174661 AAGCATATGG
Statistics
Matches: 190, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
234 190 1.00
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.23
Consensus pattern (234 bp):
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACCAAGATC
GGACCAGACCGACGGCTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCAACCAATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACACTCATTTCATGGGTTGACTTAAG
CATACAGAGTTCATTCCCAGTCTCTCTGGTCGGCATAGT
Found at i:1174667 original size:26 final size:26
Alignment explanation
Indices: 1174637--1174689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1174627 GTTGACTTAG
*
1174637 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1174663 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1174689 G
1 G
1174690 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1175561 original size:26 final size:26
Alignment explanation
Indices: 1175522--1175577 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
1175512 TGGGTTGACT
*
1175522 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTAATTCCCAGTC
**
1175548 TAAGCATATGGAGTTAATTCCCAGTC
1 TAAGCATACAGAGTTAATTCCCAGTC
1175574 TAAG
1 TAAG
1175578 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTAATTCCCAGTC
Found at i:1176447 original size:26 final size:26
Alignment explanation
Indices: 1176411--1176463 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1176401 GTTGACTTAG
*
1176411 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1176437 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1176463 G
1 G
1176464 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1177503 original size:12 final size:12
Alignment explanation
Indices: 1177486--1177516 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
1177476 GTGCTGGTAC
1177486 TTGGCCCTTATA
1 TTGGCCCTTATA
1177498 TTGGCCCTTATA
1 TTGGCCCTTATA
1177510 TTGGCCC
1 TTGGCCC
1177517 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:1178201 original size:26 final size:26
Alignment explanation
Indices: 1178165--1178216 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1178155 TGACTTAGGC
1178165 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
1178191 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
1178217 TCGGATCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:1179102 original size:26 final size:26
Alignment explanation
Indices: 1179066--1179118 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1179056 GTTGACTTAG
1179066 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1179092 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1179118 G
1 G
1179119 ATCGGACTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1179430 original size:903 final size:897
Alignment explanation
Indices: 1174443--1181289 Score: 7510
Period size: 903 Copynumber: 7.8 Consensus size: 897
1174433 TCGGCATAGT
** *
1174443 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
1 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * ** *
1174508 GGA-CCAGATTGACGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCC-AGCCGATCCC
66 GGATCGA-ACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGA-TCGATCCC
* ** * * * * *
1174571 CGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTA
129 CGTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTA
* * * * *
1174636 GGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
194 GGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGAA
* * * * * *
1174701 CCGAGGGTTGCGGCAGCACATGTTGGGCTTGGGAATGTGCTGGTGCCATATTTTTCTT-------
258 CTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAG
* * * * * *
1174759 ----CA---CCGGAGCATCACCGAAGAACCTGACCGGACGGCATTGGGGTTCCGGCGATCGGGGG
323 GCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGG-CTGCATTAGGGTTCCGACGATCGGGGG
* *
1174817 G-C-GGGGGGTGTGCGCACATGGTGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
387 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
1174880 ATCCCTCATCAAACCTCCAGAACTCACACCCCCTTAAAGAGCGTTCGAGATTTTACAAGTTTGTT
452 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
1174945 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACA
517 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
1175010 CTTCTAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGGCTACCAA
582 CTTCGAGTTTTTAGCTGAATTTTTTTT-TGCATGCCAACAAAAATA-AAGGATCACGTCTACAAA
* * * * *
1175075 GTTTGGGGCCAAAACACGTTCGAAAAAAAGTTTTAAAAATTTCGAACCGCAAAAAGTTTCAAAAA
645 GTTTGGGGCCAAAACTCCTTCG-AAAAAA-TTTTAAAAA-TCCAAACCGTAAAAAG-TTCAAAAA
*
1175140 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTG
706 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
1175204 TATGAATTTACAAGCCATGAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
771 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
* *** * * * *
1175269 CTGCTGCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGCCCGGCGTAGTGCCCGCAC
836 CTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
* * * *
1175331 GCCCGTCC-GCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACCAAGAT
1 GCCCG-CCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * * * * * * *
1175395 CGGACCGGACCGAGGGCTGCTGTAGCAGGATTGGCAGCATGTAGAGGGGGACCCAACCGATCCCC
65 CGGATCGAACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * *
1175460 GGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAA
130 GTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * *
1175525 GCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTAATTCCCAGTCTAAGATCGGACCGGAC
195 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGAAC
** * * * * * * *
1175590 CAAGGGTTGC-AGCAACACATGTTGGGCTCGAGCATGTGCTGGTGCCATTTTTTTCTTCGTCGGG
259 TGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAG
* * * * * * * **
1175654 GCACCATCTCCAGAGCATCGCCGAAGAACCTGATCGGCGGCATTGGGGTTCCGGTGATCGGGTGG
323 GCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATCGGG-GG
* *
1175719 GCCGGGGTGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
387 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
1175784 ATCCCTCATCGAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
452 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
1175849 GCTAGTAGCCATTAAAGTGTCTGACATGGGAACACTTTTTTCAAATGGTCAAAAAATCTTGTACA
517 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
1175914 CTTCGAGTTTTTAGCTGAATTTTCTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCATG
582 CTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATA-AAGGATCACGTCTACAAAG
* * **
1175979 TTTAGGGCCAAAACTCCTTTC-----AA----AAAAATCCCGAACCGTAAAAAGTTTTGAAAATC
646 TTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAT-CCAAACCGTAAAAAG-TTCAAAAATC
* * * * *
1176035 GTGAAAAATAGAAAATGAGTTGTCCTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTA
708 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
1176100 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
773 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCT
* * *
1176165 ACCACCCTATCGATACACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTG----CCC
838 ACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
* *
1176221 GCCCG----CCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
1 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * * * * **
1176282 AGACCGGATTGAGGGTTGTC-ACAGTAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCC
66 GGATCGAACCGAGGGTTG-CGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC
* * * * * * *
1176346 GGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGTGCCCGCACGCTCTTTTCGTGCGTTGACTTAG
130 GTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * * * *
1176411 GCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGAC
195 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGAAC
** * * * *
1176476 CAAGGGTTGCGACAGTACATGCTAGGCTTGGGCATGTGCTGGTGCCATATTTTTCTT---C---G
259 TGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGG
* * * *
1176535 -----TCG-C--AGCATCG-TCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGG
324 CACCATCGCCGGAGCATCGCT-GGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATCGGGGGG
** *
1176591 -ATGGGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
388 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1176655 TCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAAGTTTGCTG
453 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1176720 CCAGTAGCCATTAAAGTGTCTGAAATGGGTACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
518 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
1176785 TTCGAGTTTTTAGCTGAATTGTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAA-
583 TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATA-AAGGATCACGTCTA-CAAAG
* * ** * * *
1176849 TTTGGTGCAAAAACAACTTCCAAAAAAATTTTAAAAAATTCTAAACCGCAAAAAGTTTCAAAAAT
646 TTTGGGGCCAAAACTCCTT-CGAAAAAATTTT-AAAAA-TCCAAACCGTAAAAAG-TTCAAAAAT
* *
1176914 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
707 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
1176979 ATGAATTTACAAGCCATGAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACC
772 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* ** * * * * * *
1177044 TGCCGCCCTATCAATCCACGTCTTGCGCATCCCGTCTCTCTGGCCGTCGTAATGCCCGCAC
837 TACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
* ** * * * * * *
1177105 GCCCACCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCAAACGGAGTTCATTCCCGGACCAAGATC
1 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * * ** * * *
1177170 GGACCGGACCGAGGGCTGCTACAGTAGGATCGGTAGCATGTAGAGGGGGACCCGACCGATCCCCG
66 GGATCGAACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * *
1177235 GCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGATCATTTCGTGGGTTGACTTAAG
131 TCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * *
1177300 CATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CCGGACCAAG---GGTTG--C--
196 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGAACTG
** * *
1177348 A--G---C-A-A-CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTC-AGGGC
261 AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGA-GGC
* * * * * **
1177404 ACCAT---C---G--T--C-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGTGTAC
325 ACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATCGGGGGGCC
**** * * * * * ** **
1177458 GCCCATGATCTGCG-ATA-GGTGCTG-GTACTTGGCCCTTATA-TTGGCCCTTATATTGGCCCCC
390 G-GGGGGGTGTGCGCACATGATG-TGCG-A-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
1177519 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
451 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
1177584 TGCCAGTAGCCATTAAAGTATCCGAAATGGGGTCAC-TTTTTCAAATGGTCACAAAATCTTGTAC
516 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * * *
1177648 AATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCAAAAAAAATACAAGGATCACATCTACCAA
581 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATA-AAGGATCACGTCTACAAA
* * * *
1177713 GTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTAAAAAAT
645 GTTTGGGGCCAAAACTCCTT-CGAAAAAATTTT-AAAAAT-CCAAACCGTAAAAAGTTCAAAAAT
* * *
1177778 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGTCTTAAGGGACCATTGT
707 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
1177843 ATGAATTTACAAGCCATAAAAATGGCATTGGC-T-CATAGAAATATGAAGATGTGCCTAAACCCA
772 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCA
* * * ** ** **
1177906 CCTGCCACCCTATTGATCCACGGCTTGTTCATCCTTTCTCTCTGGCCGACGTAGTGCCTGCCC
835 CCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
* *
1177969 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATT
1 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** *
1178034 GGATC-AGACCGAGCATTGCGGCAGCGAGATCGACAGCA--CATGAAGGGGGACCCGATCGATCC
66 GGATCGA-ACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCA-G-AGGGGGACCCGATCGATCC
* * * * *
1178096 CCGTCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGTGTTGACTT
128 CCGTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
* * *
1178161 AGGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGGATCGG
193 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT-GA
* * * * * *
1178226 ACTGAGGCTTACGACAGCACTTGCTGGGCTCGGGCATGTGCTAGCGCCACATATTTCTTCGCCGA
257 ACTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGA
* * * * *
1178291 GGCACCATCGCCGGAGCATCGC-CGAAAACCTGACCGAC-GACATTGGGGTTTCGGA-GATCGAG
322 GGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCTG-CATTAGGG-TTCCGACGATCG-G
* *
1178353 GGGGCCAGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
384 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
1178418 CCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGTGCATTTGAGATTTTACAGGTTT
449 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
1178483 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
514 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
1178548 ACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAGAAGGATCACGTCTACA
579 ACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATA-AAGGATCACGTCTACA
*
1178613 AAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTTGAAAAATCTAGAACCGTAAAAAGTTTCAAA
643 AAGTTTGGGGCCAAAACTCCTTCGAAAAAA-TTTT-AAAAATCCA-AACCGTAAAAAG-TTCAAA
* * *
1178678 AATCATGAAAAATAAAAAACGAGTCGTCTTGCCATCAAACTTCGCGTGAAGGCTTAAGGGACCAT
704 AATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
1178743 TGTATGAATTTACAAGCCATACAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
769 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCC
* * * *
1178808 ACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTGTCTCTGGCTGGCGTAGTACCCACCC
834 ACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
* ** * *
1178872 GTCCGTTTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
1178937 AGACCGAACTGAGGGTTGCGGCAGGAAGATCGATAGAACGCAGAGGGGGACCTGATCGATCCCCG
66 GGATCGAACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * * *
1179002 TCTTACGCATCCCGCCCCTCTGGCTGACTGAGCGCCCACACGTTCATTTCGTGGGTTGACTTAGG
131 TCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
*
1179067 CATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGAACT
196 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TGAACT
** * * * * * *
1179132 GAGGGTTACGGTAGCACATGCTGGGGTCGGGCATATGCTGGTGTCATATTTTTCTTCACCGGGGA
260 GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGGC
*
1179197 ACCATCCCCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATCTGGGGGGC
325 ACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATC-GGGGGGC
*
1179262 CGGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
389 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
1179327 CCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTAGCTGC
454 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1179392 CAGTAGCCATTAGAGTGTCTAAAATGGGGACA-TTTTTTCCAAATGGTCACAAAATCTTGTACAC
519 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACAC
*
1179456 TTCAAGTTTTTAGCTGAA--TTTTTTT--ATG----C-----------AT---G-C--C-AAGTT
583 TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAGGATCACGTCTACAAAGTT
* *
1179495 TGGGGCCACAACTCCTTCTGAAAAAATTTT-AAAA---AATCC---------TCAAAAATCGTGA
648 TGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAATCCAAACCGTAAAAAGTTCAAAAATCGTGA
* * *
1179547 AAAAGATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAA
712 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * ** * * *
1179612 TTTACAAGACATAAAAAAGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCGCCTACC-
777 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * *
1179676 ACTCTATTGATCCACGGCTTGTGCATCCCGGCTCTCTGGCC-AGCGTAGTGCCCGCCC
842 AC-CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCACCC
* * * *
1179733 GCCCACCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACGGAGTTCATTCCCAATCTAAGATC
1 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
1179798 GGATCGGACTGAAGGTTGCGACAGCAGGATCGATAGCACGTAGAGGGGGGCCCGATCGATCCCCG
66 GGATCGAACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCG
* * * * *
1179863 TCTTAAGCATCCCGCCCCTTTGGCCGGTTGAGCACCCGCACGTTCATTTCGTGGGTTGACTTAGG
131 TCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* **
1179928 CATACGGAGTTCATTCCCAG--T---C-TA---AG---ATT----G-----GATC--A-G-ACCA
196 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGAACTG
** * * *
1179968 AGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCA
261 AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGGCA
* * * * * *
1180033 CCATCGCCGAAG-AAC-CT---G-ACC-GA-CGG-T--ATTAGGGTACTGGCAATCGGGGGGGCC
326 CCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATC-GGGGGGCC
**
1180087 -AAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
390 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
1180151 CCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
455 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * * *
1180216 AGTAGCCATTTAAGTGTCTGAAATGCGGACACTATTTTCAAATGGTCACAGAATCCTGTACACTT
520 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
1180281 CGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA-AAAAATAAAAGATCACGTCTACCAAGTTTG
585 CGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAGGATCACGTCTACAAAGTTTG
** * *
1180345 GGGTGAAAACTTCTTCGAAAAAATTTTAACAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
650 GGGCCAAAACTCCTTCGAAAAAATTTTAA-AAAT-CCAAACCGTAAAAAG-TTCAAAAATCGTGA
* *
1180410 AAAATAAAAAACGAGTTGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
712 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
1180475 TTTACAAGCCATAAAAATGTCATTGGCATGCAAAAATATGAAGAAGTGCCTAAACCCACCTACCA
777 TTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
1180540 CCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTATTGCCCACCC
842 ACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
** *
1180596 ATCCG----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
1180657 GGATCGGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAAAGGGGGACCCGAACGATCCCCA
66 GGATCGAACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCC-
* * * * * *
1180722 AT-TTGCGCATCCCACCCGTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
130 GTCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
1180786 GCATACAGAGTTCATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATTAGAC
195 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGA-AC
* * * *
1180851 CGAGGGTTATGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTTTTCTTCGCTGAGG
259 TGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGG
* * * * * *
1180916 CACCATCGTCGGAGCATCGTTGGAGAACCTGACCGGCGGCTTTAGGGTTTCGGCGATCGGTGGGG
324 CACCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATCGG-GGGG
* * * *
1180981 TCGCGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTA
388 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1181046 TCCCCCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
453 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
1181111 CCAGTAGCCGTTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGATCACAAACTCTTGTACAC
518 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
1181176 TTCGAGTTTTTAGCTGAAATATTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTA-ATCA
583 TTCGAGTTTTTAGCTG-AATTTTTTTTTGCATGCCAACAAAAATA-AAGGATCACGTCTACA-AA
* *
1181240 GTTTGGGGCCAATA-TGCCTTCCGAAATAATTTTAAAAAATCCCAAACCGT
645 GTTTGGGGCCAAAACT-CCTT-CGAAAAAATTTT-AAAAAT-CCAAACCGT
1181290 CTTACCATGA
Statistics
Matches: 5113, Mismatches: 619, Indels: 441
0.83 0.10 0.07
Matches are distributed among these distances:
823 188 0.04
824 27 0.01
825 7 0.00
826 1 0.00
827 6 0.00
828 2 0.00
829 3 0.00
830 1 0.00
833 2 0.00
834 2 0.00
835 70 0.01
836 1 0.00
838 1 0.00
840 4 0.00
841 2 0.00
844 1 0.00
845 2 0.00
847 12 0.00
848 20 0.00
849 6 0.00
852 2 0.00
853 3 0.00
855 2 0.00
856 1 0.00
859 178 0.03
860 3 0.00
861 361 0.07
862 40 0.01
863 179 0.04
864 367 0.07
865 179 0.04
866 122 0.02
867 14 0.00
868 6 0.00
869 2 0.00
870 249 0.05
871 13 0.00
872 45 0.01
873 1 0.00
874 9 0.00
875 11 0.00
877 29 0.01
878 15 0.00
880 201 0.04
881 3 0.00
882 2 0.00
883 1 0.00
884 9 0.00
885 71 0.01
886 273 0.05
887 7 0.00
888 461 0.09
889 5 0.00
890 55 0.01
891 4 0.00
892 3 0.00
893 80 0.02
894 120 0.02
895 2 0.00
896 20 0.00
897 192 0.04
898 21 0.00
899 11 0.00
900 70 0.01
901 186 0.04
902 166 0.03
903 525 0.10
904 430 0.08
905 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GCCCGCCTACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGATCGAACCGAGGGTTGCGGCAGCAAGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCG
TCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGAACTG
AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCGAGGCA
CCATCGCCGGAGCATCGCTGGAGAACCTGACCGGCTGCATTAGGGTTCCGACGATCGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAGGATCACGTCTACAAAGTTTGG
GGCCAAAACTCCTTCGAAAAAATTTTAAAAATCCAAACCGTAAAAAGTTCAAAAATCGTGAAAAA
TAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCC
Found at i:1180816 original size:26 final size:26
Alignment explanation
Indices: 1180786--1180838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1180776 GTTGACTTAG
*
1180786 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1180812 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1180838 G
1 G
1180839 ATCGGATTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1181489 original size:26 final size:26
Alignment explanation
Indices: 1181453--1181505 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1181443 GTTGACTTAG
1181453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1181479 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1181505 G
1 G
1181506 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1182386 original size:26 final size:26
Alignment explanation
Indices: 1182349--1182401 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1182339 GTTGACTTAG
*
1182349 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1182375 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
1182401 G
1 G
1182402 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1183274 original size:26 final size:26
Alignment explanation
Indices: 1183244--1183296 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1183234 GTTGACTCAG
*
1183244 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1183270 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1183296 G
1 G
1183297 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1184134 original size:26 final size:26
Alignment explanation
Indices: 1184098--1184150 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1184088 GTTGACTTAG
1184098 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1184124 GCATACGGAGTTCCTTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1184150 G
1 G
1184151 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1185434 original size:874 final size:866
Alignment explanation
Indices: 1183660--1186795 Score: 3797
Period size: 874 Copynumber: 3.6 Consensus size: 866
1183650 AATTTTTTTT
* *
1183660 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAAT-CCTAAC--C----G---
1 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAGTTT
* * * * * * * *
1183715 TAAAAATTGAGAAAATTAGAAAATGAGTCGTCTTGCGATGAAACTTCACGTGATGGCTTAAAGGA
66 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
1183780 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAACATAAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * *
1183845 ACCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CTAGTGTAGTG--C
196 ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCC
* * *
1183907 -CCGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
260 GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-AAGATCG
* * ** *
1183971 GATCGGA-TCAAGGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-ACCGATCCCCG
324 GACCGGACTGAAGG-TT-CAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * *
1184034 ACTTGCGCATCCCGCCCCTTTGGTCAGCTGAGTGCCCGCACGCTGGTTTTGTGGGTTGACTTAGG
387 ACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1184099 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCCATTCTAAGATCAGACCAGAAT
452 CATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------CAGACC-----
* *
1184164 GAGGGTTACGACAGCACATGCTGGG-TC-AGGCATGTGCTGGTGTCA-CATTTTTCTTCGTCGGG
491 GAGGGTTACGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTG-CAGCATTTTTCTTCATCGGG
* * * * *
1184226 CACCATCACCGAAAAATCACCGGAGAACCTGACCAGCGGCATTGGGGTTTCGGCGATCG-GGGGG
554 CACCAACGCCG-AACAT--CCGGAGAACCTGACGA-CGGCATTGGGGTTTCGACGATCGAGGGGG
* * *
1184290 CC-GGG-GGGTTTGGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTT
615 CCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
1184353 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCT
680 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
1184418 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
745 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAA
* * * *
1184483 CTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCGAAAAAAATTACAAGGATCAC-A
810 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGA
1184539 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAACGT
1 -CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAA-GT
* *
1184604 TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGG
64 TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
1184669 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
129 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * *
1184734 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCGCATCTCTATGGCCGACGTAGTGCC
194 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* *
1184799 CGACCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
259 CG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-AAGAT
* * * * *
1184864 CGGACTGAACTGAAGGTTACAGTAGCAGGATCGGCAGTACGCAGAGGGGGACCCGACCTATCCCT
322 CGGACCGGACTGAAGGTT-CAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * *
1184929 GGCTTGCGCATCCCGCCCCTCTCGTCAGCTGAGCGCTCGCATGCTCGTTTCGTGGGTTGACTCAG
386 GACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
1184994 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
451 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
*
1185059 CTCGAGCATGTGCTGGTGCAGCATTTTTCTTCATCGAGGCACCAACGCCGGAGCATGCCGGAGAA
516 CTCGAGCATGTGCTGGTGCAGCATTTTTCTTCATCG-GGCACCAACGCC-GAACAT-CCGGAGAA
* * *
1185124 CCTGATCGACGACATTGGGGTTCCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACATGTTGTG
578 CCTGA-CGACGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACATGATGTG
* *
1185189 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTTGAGAACTCAC
642 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1185254 ACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGGAAT
707 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1185319 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTG
772 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTG
1185384 TGCGTGCCAAAAAAAATACAAGGATCACGA
837 TGCGTGCCAAAAAAAATACAAGGATCACGA
* * *
1185414 CTACTAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAGAGTT
1 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAA-AGTT
* * * * * *
1185479 TCGAAAATCGTGAAAAAAAGAAAACGAGTAGTCTTGCCATGAAACTTCATGTGAAGTCTTAAGAG
65 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
1185544 ACCATTGTATGAATTTACAAGCCATAAAAATGGCAATAGCATGCAGAAATATGAAGATGTG-CTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
**
1185608 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCC
195 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
*
1185673 GCCCGCCCACCGGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCAAG
260 G-CCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAG
* * * **
1185738 ATCAGACCGGA-TCGAGGGTTGCGGTATTAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
320 ATCGGACCGGACT-GAAGGTT-CAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* *
1185802 CCCGACTGGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
383 CCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
1185867 TAGGCATACGGAGTTCATTCCCAGTCTAACCATATGGAGTTCATACCCAGTCTAAGATCGGACCA
448 TAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC----A---GACCA
* * * * *
1185932 GACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTTCTGGTGCCGCATTTTTCTTCACCG
487 GACCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCAGCATTTTTCTTCATCG
** * * *
1185997 GG---GGA-G-C-ATCAT-CGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGAGGGGT
552 GGCACCAACGCCGAACATCCGGAGAACCTGA-CGACGGCATTGGGGTTTCGACGATC-GAGGGGG
* * * *
1186055 CGGGGGTTGG-GTGCGCACATGATGTG-GATGGGTGCTGGCACTTGGCGCTTATATTGGCCCCCT
615 CCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
1186118 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
680 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
1186183 GCCAGTAGCCGTTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATA
745 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAA
* * * *
1186248 CTTCGAGTTTTTAGCTGAATTTTTTTGTACGTGCC-AAAAAAATTCAAGGATCATGT
810 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGA
* * * *
1186304 CTACCAAGTTTGGGGACAAAAATCCTTTCGAAAAAATTTT-AAAAATCCCGAATAGCAAAAAGTT
1 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGC-AAAAGTT
* *
1186368 TTGAAAATCGTGAAAAATA-AAAACGAGTCATCTTGCCATGAAACTACACGTGAAGGCTTAAGGG
65 TTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * **
1186432 ACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATAT-AAGATACGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
* *
1186496 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCACCCTGGCCGACGTAGTG--C
195 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
1186559 -CTGCCCGCCCGCTCGTTTCGTCGGTTGAG-TTAGGCAAACGGAGTTCATTCCAAGTCCAACATC
260 GCCGCCCGCCCGCTCGTTTCGTCGGTTG-GCTTAGGCATACGGAGTTCATTCCCAGT-CAAGATC
* ** ** * * * **
1186622 GAACCGGACCAAAGGTTGTGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCG
323 GGACCGGACTGAAGGTTCAG-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * *
1186687 ACTTACGTA-CCTGCCCCTCTGGTCGGCTGAGCGCCCGTACACTCGTTTCAG-GGGTTGACTTAG
387 ACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAG
* *
1186750 GCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT
451 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
1186796 GCTACAGCAG
Statistics
Matches: 1985, Mismatches: 203, Indels: 163
0.84 0.09 0.07
Matches are distributed among these distances:
853 14 0.01
856 1 0.00
860 2 0.00
861 1 0.00
870 27 0.01
871 62 0.03
872 23 0.01
873 72 0.04
874 403 0.20
875 10 0.01
876 137 0.07
877 48 0.02
878 1 0.00
879 14 0.01
880 145 0.07
881 71 0.04
882 3 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 1 0.00
887 6 0.00
888 148 0.07
889 35 0.02
890 56 0.03
891 359 0.18
892 53 0.03
893 15 0.01
894 6 0.00
895 100 0.05
896 97 0.05
897 1 0.00
898 1 0.00
899 1 0.00
901 2 0.00
902 64 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (866 bp):
CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAAGTTT
TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAGATCGGA
CCGGACTGAAGGTTCAGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT
GCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGA
GCATGTGCTGGTGCAGCATTTTTCTTCATCGGGCACCAACGCCGAACATCCGGAGAACCTGACGA
CGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCA
AAAAAAATACAAGGATCACGA
Found at i:1185907 original size:26 final size:26
Alignment explanation
Indices: 1185871--1185921 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1185861 TTGACTTAGG
*
1185871 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATACCCAGTCTAAC
*
1185897 CATATGGAGTTCATACCCAGTCTAA
1 CATACGGAGTTCATACCCAGTCTAA
1185922 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATACCCAGTCTAAC
Found at i:1186260 original size:891 final size:887
Alignment explanation
Indices: 1181381--1186775 Score: 6289
Period size: 902 Copynumber: 6.1 Consensus size: 887
1181371 ATATGAAGAT
* * * *
1181381 GATCCCCGGCTTGCGCATCTCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1181446 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
1181511 ACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCAAGTGCTGGTGCCGCATTTTTGTTC
131 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * * **
1181576 GTCGGGGCACCATCGCCGAAGCCTCGTCGGAGAACCTGATCAGCCGCATTGGGGTGTGCAAAC-A
196 -ACCGGG-------G--G-AGCATCATCGGAGAACCTGACCGGCGGCATTGGGGT-T-CCGACGA
* *
1181640 TC-GA------GGGGGT-GTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTG
248 TCGGAGGGGCCGGGGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
1181697 GCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
313 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
1181762 GTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAGTC
378 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* ** * *
1181827 TTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCACCCCAAAAAAAATACAACGATCACATA
443 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACA-C
* * * * * *
1181892 TACCAACTTTGGGGCTAAAAGTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTT
507 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * *
1181957 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGA
572 CGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
1182022 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
637 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* * * *
1182087 ACCCACCTGCCACCCTATCGATCCACGGCTTACACATCCCGTCTCTCTGGCCAGCGTAGTGGCCG
702 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-G-C-
* * * *
1182152 CCTGCCCGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAG
764 CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * ** **
1182217 ATTGGACCAGATCGAGGGTTTCGGCAACAAGATCGACAGTACATAGAGGGGGACCCGGTC
828 ATCGGACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
* * ** * * *
1182277 GATCCTCGGCTTGCGCATTTCGCCCCTCTGGTCGGCTGAGCGCCCGCTCGCTTGTTTCGTTGGTT
1 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
1182342 GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * ** * ** * * *
1182407 ACTGGACTGCTGGTT-CGGTAGCACATGCTGGGCTTGGGCAAGTGCTGGTACCACATTTTTCTTC
131 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCA--TTT-TTC
*** * * *
1182471 GTTGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
193 -TT----CA-C--CGGGGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * ** *
1182536 GGAGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGCTACCTATCCCTTATATTGT
250 GGAGGGGCCGGGGGTG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
1182600 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGGATTTGAGATTTTATAGG
314 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * * *
1182665 TTTGCTGCCAGTAGCGATTAAAGTGTCTGAAATGGGGAAATTTTTTTCAAATGGCCACAAAATGT
379 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * * ** * * *
1182730 TGTAAACTTTGAGTTTCTAGCTGAATTTTTTCGTGCATGCTGACAAAAATACATGGATCACGTCT
444 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC-ACT
* *
1182795 A-AAAGGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-CTAAAAAGTT
508 ACCAA-GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC-AAAAAGTT
* * *
1182858 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGG
571 TCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
1182923 ACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT-CTCC
636 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC-CT
* * *
1182987 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCAT-CC--CTCTCTGGCCGGGGTAGAGCC
700 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
*
1183049 CGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
765 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
1183114 TGGACCAGA-CTAAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACA
830 CGGACCGGATC-AAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
** * * * * * * *
1183172 GATCCTTGACTTGTGCATCCCGCCCCTTTGGCCGGCTGAGTGCCCACATGCTCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* *
1183237 GACTCAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
1183302 ACCGGACTGAGGGTTACGACAGGACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTC
131 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTC-T-
** *
1183367 GTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGAGGGTTCCGACGAT
194 -T-----CA-C--CGGGGGAGCATCATCGGAGAACCTGACCGGCGGCATTG-GGGTTCCGACGAT
* * * *
1183432 CGGGGGGGCCGGGGG-GTGTGCACACATGATGTGTGATCGGTGCTGGTACTTGGCCCTTATATTG
249 CGGAGGGGCCGGGGGTG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* ** * *
1183496 GCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCAGAAAGAACATTTGAGATTTTACAA
313 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
1183561 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATC
378 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
1183626 TTGTGCACTTCGAGTTTTCAGCTGAA---TTTT-T---T-----------T-------T----CT
443 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACACT
* * *
1183662 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAACAAT-CCTAACCGTAAAAA--TT-
508 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* * * * *
1183723 G---A----GAAAATTAGAAAATGAGTCGTCTTGCGATGAAACTTCACGTGATGGCTTAAAGGAC
573 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
1183781 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAACATAAAGATGTGCCTAAA
638 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* ** *
1183846 CCCACCTACAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTAGTGTAGT----GC
703 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
1183907 CCGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
768 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
1183972 ATCGGATCAAGGATTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-ACC
833 ACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
* * * * *
1184026 GATCCCCGACTTGCGCATCCCGCCCCTTTGGTCAGCTGAGTGCCCGCACGCTGGTTTTGTGGGTT
1 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
1184091 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCCTTCCCATTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * * *
1184156 ACCAGAATGAGGGTTACGACAGCACATGCTGGG-TCAGGCATGTGCTGGTGTCACATTTTTCTTC
131 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * * *
1184220 GTC-GGGCACCATCACCGAAAAATCACCGGAGAACCTGACCAGCGGCATTGGGGTTTCGGCGATC
196 ACCGGGGGAGCAT---C-----AT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* *
1184284 GG-GGGGCCGGGGG-GTTTGGGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
250 GGAGGGGCCGGGGGTG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
1184347 CCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAGG
314 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
1184412 TTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
379 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
1184477 TGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCGAAAAAAATTACAAGGATCACATCT
444 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACA-CT
* * *
1184542 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACAGCAAAACGTTTT
508 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
1184607 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGAC
573 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
1184672 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
638 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * * * *
1184737 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCGCATCTCTATGGCCGACGTAGTGCCCGA
703 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* *
1184802 CCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
768 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * * *
1184867 ACTGAACTGAA-GGTTACAGTAGCAGGATCGGCAGTACGCAGAGGGGGACCCGACC
833 ACCGGA-TCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
* * * * * * *
1184922 TATCCCTGGCTTGCGCATCCCGCCCCTCTCGTCAGCTGAGCGCTCGCATGCTCGTTTCGT-GG--
1 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
1184984 G---T-----T---GA---C--T--CAG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* *
1185026 ACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCAGCATTTTTCTT
131 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATTTTTCTT
* ** * * * *
1185090 CATCGAGGCACCAACGCCGGAGCATGCCGGAGAACCTGATCGACGACATTGGGGTTCCGACGATC
195 CACCG-GG---GGA-G-C--ATCAT--CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* *
1185155 -GAGGGGGCCGGGGTGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
250 GGA-GGGGCCGGGG-GTG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
1185219 GGCCCCCTATCCCTCATGAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
312 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
1185284 TGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAAT
377 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
1185349 CTTGTAAACTTTGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGA
442 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAC-A
* * *
1185414 CTACTAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAGAGTT
506 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* * * * *
1185479 TCGAAAATCGTGAAAAAAAGAAAACGAGTAGTCTTGCCATGAAACTTCATGTGAAGTCTTAAGAG
571 TCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
1185544 ACCATTGTATGAATTTACAAGCCATAAAAATGGCAATAGCATGCAGAAATATGAAGATGTG-CTA
636 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* *
1185608 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCC
701 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
*
1185673 GCCCGCCCACCGGCCCGCTCGTTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTC-AA
766 GCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
1185737 GATCAGACCGGATCGAGGGTTGCGGTATTAGGATCGGCAGCACGCAGAGGGGGACCCGACC
827 GATCGGACCGGATCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
* *
1185798 GATCCCCGACTGGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
1185863 GACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATATGGAGTTCATACCCAGTCTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** *
1185928 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTTCTGGTGCCGCATTTTTCTTC
131 ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* *
1185993 ACCGGGGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGAGGGGTCGG
196 ACCGGGGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGG
* *
1186058 GGGTTGGGTGCGCACATGATGTG-GATGGGTGCTGGCACTTGGCGCTTATATTGGCCCCCTATCC
261 GGG-T-GGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1186122 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
324 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
1186187 GTAGCCGTTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTC
389 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * **
1186252 GAGTTTTTAGCTGAATTTTTTTGTACGTGCC-AAAAAAATTCAAGGATCATGTCTACCAAGTTTG
454 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA-CACTACCAAGTTTG
* * * ** *
1186316 GGGACAAAAATCCTTTCGAAAAAATTTT-AAAAATCCCGAATAGCAAAAAGTTTTGAAAATCGTG
518 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTG
* *
1186380 AAAAATA-AAAACGAGTCATCTTGCCATGAAACTACACGTGAAGGCTTAAGGGACCATTGTATGA
583 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * **
1186444 ATTTACAGGCCATAAAAATGGCATTGGCACGTAGAAATAT-AAGATACGCCTAAACCCACCTACC
648 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
1186508 ACCCTATCGATCCATGGCTTGCGCATCCCGTCACCCTGGCCGACGTAGT----GCCTGCCCGCCC
713 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* * * * * *
1186569 GCTCGTTTCGTCGGTTGAG-TTAGGCAAACGGAGTTCATTCCAAGTCCAACATCGAACCGGACCA
778 GCTCGTTTCGTCGGTTG-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCA
* * * * **
1186633 AAGGTTGTGACAGCAAGATCGACAGCACGCAGAGGGGGACCCGGTC
842 AGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
* * * * *
1186679 GATCCCCGACTTACGTA-CCTGCCCCTCTGGTCGGCTGAGCGCCCGTACACTCGTTTCAG-GGGT
1 GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTC-GTGGGT
1186742 TGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1186776 ATCAGACCGG
Statistics
Matches: 3880, Mismatches: 467, Indels: 321
0.83 0.10 0.07
Matches are distributed among these distances:
841 5 0.00
842 1 0.00
844 1 0.00
845 1 0.00
849 1 0.00
850 202 0.05
851 14 0.00
852 24 0.01
853 29 0.01
854 148 0.04
855 106 0.03
856 142 0.04
857 4 0.00
859 14 0.00
860 1 0.00
864 2 0.00
866 11 0.00
867 41 0.01
868 3 0.00
870 61 0.02
871 61 0.02
872 13 0.00
873 69 0.02
874 400 0.10
875 8 0.00
876 104 0.03
877 51 0.01
878 1 0.00
879 22 0.01
880 146 0.04
881 76 0.02
882 4 0.00
883 2 0.00
884 5 0.00
885 1 0.00
887 8 0.00
888 146 0.04
889 38 0.01
890 56 0.01
891 353 0.09
892 58 0.01
893 12 0.00
894 15 0.00
895 397 0.10
896 265 0.07
897 212 0.05
898 4 0.00
899 17 0.00
901 12 0.00
902 509 0.13
903 3 0.00
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
ACCGGGGGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGG
GGGTGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACACTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGG
TTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACC
Found at i:1188018 original size:26 final size:26
Alignment explanation
Indices: 1187981--1188033 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1187971 GTTGACTTAG
1187981 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1188007 GCATATCG-AGTTCATTCCTAGTCTAA
1 GCATA-CGAAGTTCATTCCCAGTCTAA
1188033 G
1 G
1188034 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1188946 original size:159 final size:159
Alignment explanation
Indices: 1188651--1189025 Score: 488
Period size: 159 Copynumber: 2.4 Consensus size: 159
1188641 CGCCCGCCTG
* * * ** * *
1188651 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCCAAGACTGGACC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGACC
* * *
1188716 GGACCGAAGGTTGCGACAGCAGGATCGGCAGCACGCAGAGAGGGACCCAGTCGATCCCTGGCTTG
66 GGACCGAAGGTTGCGACAGCAGCATCGGCAGCACACAGAGAGGGACCCAGTCGATCCCCGGCTTG
*
1188781 CGCATCCCGCC-CATCTGGCCAGCGGAGCA
131 CGCATCCCGCCGC-TCTAGCCAGCGGAGCA
*
1188810 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGATC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGA-C
* * *
1188874 CGGACC-AAGGGTTGCTACAGCAGCATCGGTAGCACACAGAGGGGGACCC-GATCGATCCCCGGC
65 CGGACCGAA-GGTTGCGACAGCAGCATCGGCAGCACACAGAGAGGGACCCAG-TCGATCCCCGGC
* * * **
1188937 TTGTGCATCCTGCCGCTCTAGCCAGCTGAGTG
128 TTGCGCATCCCGCCGCTCTAGCCAGCGGAGCA
* *
1188969 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1189026 CATACGGAGT
Statistics
Matches: 189, Mismatches: 23, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
158 6 0.03
159 182 0.96
160 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.22
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTCGACC
GGACCGAAGGTTGCGACAGCAGCATCGGCAGCACACAGAGAGGGACCCAGTCGATCCCCGGCTTG
CGCATCCCGCCGCTCTAGCCAGCGGAGCA
Found at i:1189035 original size:26 final size:25
Alignment explanation
Indices: 1188999--1189077 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 25
1188989 GTTGACTTAG
1188999 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
1189025 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
1189051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
1189077 G
1 G
1189078 ATCGGACTGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 49 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:1189298 original size:20 final size:20
Alignment explanation
Indices: 1189273--1189313 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1189263 TACTTGGCCT
1189273 TTATATTCACCCCTTATCCC
1 TTATATTCACCCCTTATCCC
**
1189293 TTATATTTGCCCCTTATCCC
1 TTATATTCACCCCTTATCCC
1189313 T
1 T
1189314 CATCAAACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.37, G:0.02, T:0.44
Consensus pattern (20 bp):
TTATATTCACCCCTTATCCC
Found at i:1190877 original size:26 final size:26
Alignment explanation
Indices: 1190848--1190900 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1190838 GTTGACTTAG
* *
1190848 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1190874 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1190900 G
1 G
1190901 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1192276 original size:133 final size:133
Alignment explanation
Indices: 1192038--1192305 Score: 439
Period size: 133 Copynumber: 2.0 Consensus size: 133
1192028 CGAGAACTCA
* * **
1192038 CACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTGAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCAAAAA
* ***
1192103 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAG-TCGAATTTTTT
66 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAATTTTTTAGCT-GAATTTTTT
1192167 TATG
130 TATG
*
1192171 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCGGTAGCCATTAAAGTGTCAAAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCAAAAA
1192236 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAATTTTTTAGCTGAATTTTTTT
66 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAATTTTTTAGCTGAATTTTTTT
1192301 ATG
131 ATG
1192304 CA
1 CA
1192306 TGCCAAAAAA
Statistics
Matches: 125, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
133 124 0.99
134 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (133 bp):
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCGGTAGCCATTAAAGTGTCAAAAA
TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAATTTTTTAGCTGAATTTTTTT
ATG
Found at i:1192826 original size:26 final size:26
Alignment explanation
Indices: 1192789--1192841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1192779 GTTAACTTAG
1192789 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1192815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1192841 G
1 G
1192842 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1192936 original size:11 final size:11
Alignment explanation
Indices: 1192922--1192950 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
1192912 ATCGAGGCAC
1192922 CATCGCCAGAG
1 CATCGCCAGAG
1192933 CATCGCCAGAG
1 CATCGCCAGAG
1192944 CATCGCC
1 CATCGCC
1192951 GGAGAACCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.24, C:0.41, G:0.24, T:0.10
Consensus pattern (11 bp):
CATCGCCAGAG
Found at i:1193734 original size:26 final size:26
Alignment explanation
Indices: 1193698--1193750 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1193688 GTTGACTTAG
*
1193698 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1193724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1193750 G
1 G
1193751 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1193953 original size:912 final size:898
Alignment explanation
Indices: 1192171--1197411 Score: 5230
Period size: 870 Copynumber: 5.8 Consensus size: 898
1192161 TTTTTTTATG
* * **
1192171 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCGGTAGCCATTAAAGTGTCAAAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1192236 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCAATTTTTTAGCTGAATTTTTTT
66 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1192301 ATGCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCAAAAA
131 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
1192366 AATTTAAAAAAATCTCAAACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
196 AATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1192431 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTGCAAGCCATAAAAATGGC
261 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1192496 ATTGGCACATAGAAATATGAAGATGTGCGTAAGCCCACCTACCACACTATCGATCCACGGCTTGT
326 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
1192561 GCATCCTGTCTCTCTGGTCGACGTAGAGCCCGCCCGTTCGCCTGCCCGCTCGTTTCGTTGATTGG
391 GCATCCAGTCTCTCTGGCCGAAGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTCGATTGG
* * * * *
1192626 CTTAGGCATACGAAGTTCATTCTCAGTCTAAGATCACACCAGACTGTGGGTTGCGGCAGCAGGAT
452 CTTAGGCATACG-AGTTCATTCCCAGTCTAAGATC-GACCAGATTGAGGGTTGCGACAGCAGGAT
** * * * * * *
1192691 CAACAGCACGTAGAAGGGGACCCGATCGATCCCCGGGAT-GCGCATCCTG-CCCTCTGGCCGGCT
515 CGGCAGCACGCAGAGGGGGACCCGACCGAT-CCC-AGCTCGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
1192754 GAGCGCCCTCACGCTCGTTTCGTTGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
578 GAGCGCCCGCACGCTCGTTCCG-TGGTTGACTTAGGC-TACGGAGTTCATTCCTAGTCTAAGCAT
** * * *** *
1192819 ACGGAGTTCATTCCCAGTCTAAGATCAAACCAGAATGAGGGTTGTGGCAGCACATGCTGGACTCG
641 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCG
*
1192884 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCAGAGCATCGCCAGAGCATCG
706 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCAT---C---GC--CG---GAGCATCG
* ** * *
1192949 CCGGAGAACCTGACCGATAGCATTGGGGTTCCGACGATC-GGAGGGCCG-GGGGGTGTACGCACA
760 TCGGAGAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTACGCACA
*
1193012 TGATGTGTGATG-G-GT-G-CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
825 TGATGTGCGATGAGTGTGGTCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
1193073 CAAGAACTCA
889 CAAGAACTCA
* *
1193083 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
*
1193148 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
66 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
1193213 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAA
131 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * ** *
1193278 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAGAAATTATGAAATATAGAAAACGAGTCGTCT
196 AATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1193343 TGCCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGC
261 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
**
1193408 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
326 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1193473 GCATCCCGTCTCTCTGGCCGAAGTAGTGCCCGCCCGCCCACCCACTCGTTTTGTCGATTGGCTTA
391 GCATCCAGTCTCTCTGGCCGAAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTA
* * *
1193538 GGCGTACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGGC
456 GGCATAC-GAGTTCATTCCCAGTCTAAGATC-GACCAGATTGAGGGTTGCGACAGCAGGATCGGC
* * * * * *
1193603 AGCACGTAGAGGGGGACTCGACCGATCCTCAGCTCGTGCATCCCGCCGCTTTGGCCAGCTGAGCG
519 AGCACGCAGAGGGGGACCCGACCGATCC-CAGCTCGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
*
1193668 CCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGA
583 CCCGCACGCTCGTTCCGT-GGTTGACTTAGGC-TACGGAGTTCATTCCTAGTCTAAGCATACGGA
* ** *
1193733 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCACATTCTGGGCTCGGGCAT
646 GTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCAT
* * *
1193798 GTGCTGGTGCTGCATTTTTCTT-ATTCGGGGCACCATCGTCC-GAGCATCGCCAGAGAACCTGAC
711 GTGCTGGTGCCGCATTTTTCTTCA-TCGGGGCACCATCG-CCGGAGCATCGTCGGAGAACCTGAC
** * **
1193861 TTGCAGCATTAGGGTTCCGGCGATCGGGGGGGCCG-GGGTGGTGTGTGCACATGATGTGCGATGA
774 CGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGG-GGTGTACGCACATGATGTGCGATGA
* * * *
1193925 --GT-G-CTGGTACATGGCCCTTATATTGGCCCCCTAT-CATCATCAAACCACAAGTACTCA
838 GTGTGGTCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
1193982 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCTATTAAAGTGTCTTAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
1194047 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
66 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** *
1194112 ACGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTCCGAAAA
131 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAA
1194177 AAATTTAAAAAAATCAT-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
195 AAATTTAAAAAAATC-TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
1194241 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
259 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* **
1194306 GAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAG-T
324 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GCT
* * *** *
1194370 TGCGCATCCTGTCTCCCTGGCCGACATTGGAACATAGAAATATGAAGATGTGCCTAAAGCCAC-C
388 TGCGCATCCAGTCTCTCTGGCCGA-A---G----TAG-----T---G-CCCGCC---CGCC-CGC
* * * * * * * ** ** *
1194434 TACCAC-C-TTATCGAACCA-CGGCTTACGCAT-CCAGTCTCTTGGGTGGCATAGTGC-CCGACC
432 --CCGCTCGTT-TCG-TCGATTGGCTTAGGCATACGAGT-TCAT---T--CCCAGT-CTAAGATC
* * * * * * *
1194494 G-CCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGG
486 GACCAGATTG---AG--GGTT-GC----G-ACA-GCAG--GA-T--C-GGC--AG--C--A-C-G
* ** *** * ** * **** * **
1194558 ACTGAGGGTTACGATAGCAGGATCGGTAGCACGCAG-AGGGGGACCCGATCGATCCCCGGCTTGA
525 -CAGAGGGGGACCCGA-C-CGATC-CCAGCTCGC-GCATCCCG-CCC-CTC--TGGCCGGC-TGA
* * * * **** ** * *** * * *
1194622 TCATCCCGC-CCCTC-TGGCC--GGTTGAGCGCCCG-TACGCTCGTTTCGTGAGTTGACTTAGGC
580 GC-GCCCGCACGCTCGT-TCCGTGGTTGA-CTTAGGCTACG-GAG-TTCATTCCTAGTC-TAAGC
* * * * * *
1194682 ATACGAAATTTATTCCCAGTCTAAGATCGGATTGGCCCAAGGGTTGTGGTAGCACATGCTGGGCT
639 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCT
* * *
1194747 GGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
704 CGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * * * * *
1194812 CTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGGTCGACGGGGTGTACGCACATGATGTGCA
769 CTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTACGCACATGATGTGCG
* * * *
1194877 ATG-G-GT-G-CTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATGAAGCCTCGAGAACTC
834 ATGAGTGTGGTCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
1194938 A
898 A
* *
1194939 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAGCCATTAAAGTATCTG
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC---AGTAGCCATTAAAGTGTCTG
** * * *
1195004 AAATGGGGACACTTTTTTCAAATCATTACAAAATCTTGTACACTTCGATTTTTTAGTTGAATTTT
63 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
1195069 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCC-AACCTTCCTTCCG
128 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCG
*
1195133 AAAAAATTTTAAAAAAA--TC---CTG----AA---T------T--T-AAAAATAGAAAACGAGT
192 AAAAAA-TTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
1195177 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
256 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
1195242 ATGGCATTGGAACACAGAAATATGAAGATGTGCCTAAAGCCACCTACCAACCTATCGAACCACGG
321 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
1195307 CTTGCGCATCCAGTCTCTCTGGTCGGCA-TAGTGCCTGCCTGCCCGCCCGCTTGTTTCGTCGGTT
386 CTTGCGCATCCAGTCTCTCTGG-CCGAAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATT
* * * *
1195371 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGATAGAGGGTTGCGATAGCAAG
450 GGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCG-ACCAGATTGAGGGTTGCGACAGCAGG
* * **
1195436 ATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGC
513 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCAG-CTCGCGCATCCCGCCCCTCTGGCCGGC
* * *
1195501 TGAGCGCCCGTACGCTAGTGCCGTGAGTTGACTTAGG---C--A--T-A---C--G----A--AT
577 TGAGCGCCCGCACGCTCGTTCCGTG-GTTGACTTAGGCTACGGAGTTCATTCCTAGTCTAAGCAT
* *
1195547 ------TTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCACATGCTGGGCTGG
641 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCG
* *
1195606 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCATCGGAGAACCT
706 GGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * **
1195671 GACCGGC-GACATTGGGGTTCTGACGATC----GGGCCGAGGGGGTGTGTGCACATGATGTGCGA
771 GACCGGCAG-CATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTACGCACATGATGTGCGA
* ** * *
1195731 TGA--GT-G-CTGGTACATGGCCCTTATATTGGCCCCCTATCAATCATCAAACCACAAGTACTCA
835 TGAGTGTGGTCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * *
1195792 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCTATTAAAGTGTCTTAAA
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
1195857 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
66 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1195922 GCGCAAGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
131 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
1195987 AATTTAAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTC
196 AATTTAAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
1196051 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
260 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1196116 CATTGGAACACAGAAATATGAAGATGTGCCTAAAGCCACCTACCAACCTATCGAACCACGGCTTG
325 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
1196181 CGCATCCAGTCTCTCTGGTCGGCA-TAGTGCTTGCCTGCCCGCCCGCTTGTTTCGTCGGTTGGCT
390 CGCATCCAGTCTCTCTGG-CCGAAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCT
* * * *
1196245 TAGGCATACGAAGTTCATTCCCAGTCTAAGAACGAACCGGATAGAGGGTTGCGATAGCAGGATCG
454 TAGGCATACG-AGTTCATTCCCAGTCTAAGATCG-ACCAGATTGAGGGTTGCGACAGCAGGATCG
* * * **
1196310 GTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
517 GCAGCACGCAGAGGGGGACCCGACCGAT-CCCAGCTCGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
1196375 CGCCCGTACGCTAGTTCCGTGAGTTGAC-T----TA--G-G--CA----TA--C---G---A---
581 CGCCCGCACGCTCGTTCCGTG-GTTGACTTAGGCTACGGAGTTCATTCCTAGTCTAAGCATACGG
* *
1196415 A-TTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGTAGCACATGCTGGGCTGGGGCA
645 AGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCA
*
1196479 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGCCGGAAGCATCGTCGGAGAACCTGAC
710 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGG-AGCATCGTCGGAGAACCTGAC
** * * * *
1196544 CAACGGCATTGGGGTTTCGGCGATCGGGGGGGTCGACGGGGTGTACGCACATGATGTGCGATG-G
774 CGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTACGCACATGATGTGCGATGAG
* * *
1196608 -GTGCT-TGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATC-AAGCTCAAGAACTCA
839 TGTGGTCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
1196665 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTAGCCATTAAAGTATCTG
1 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACC---AGTAGCCATTAAAGTGTCTG
** * * * *
1196730 AAATGGGGACACTTTTTTCAAATCATTATAAAATCTTATACACTTCGATTTTTTAGCTGAATTTT
63 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
1196795 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCTGA
128 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
1196860 AAAAATTTTAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
193 AAAAA-TTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
1196925 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
257 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
1196990 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGC
322 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
1197054 TTGCGCATCCCGTCACTCTAGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCATTTCGTCG
387 TTGCGCATCCAGTCTCTCTGGCCGA-AGTAGTGCCCGCCCGCCCG--C-CC-GCTCGTTTCGTCG
* ** * * * * * *
1197118 GTTCACTTAGGCATACGGAGTTCATTCCCAATCTAGGATTGGACCAGACTGAAGGTTGCGATAGC
447 ATTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGA-TCGACCAGATTGAGGGTTGCGACAGC
** * * ** *
1197183 AGGATCAACAACACGCAGAGGGGGACCCGACCGATCCCCTA-CTTGCTTATCCTGCCCCTCTGGC
510 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCC-AGCTCGCGCATCCCGCCCCTCTGGC
* * * * * * * * * *
1197247 TGACT-ATGCGCGCGCATGCTTGTTACATGGATTGACTTAGGCAAATGGAGTTCATTCCCAGTCT
573 CGGCTGA-GCGCCCGCACGCTCGTTCCGTGG-TTGACTTAGGC-TACGGAGTTCATTCCTAGTCT
* * * * ** * *
1197311 AAGCATACGGAGTTCATACCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGTAGATGCTG
635 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTG
* * * * *
1197376 GGCTCAGGCATGTGTTGGTACCGCAGTCTTCTTCAT
700 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAT
1197412 TGGTGTGCAC
Statistics
Matches: 3666, Mismatches: 457, Indels: 417
0.81 0.10 0.09
Matches are distributed among these distances:
849 10 0.00
850 137 0.04
851 3 0.00
853 119 0.03
854 2 0.00
856 1 0.00
857 139 0.04
858 2 0.00
861 1 0.00
863 2 0.00
867 1 0.00
868 1 0.00
869 107 0.03
870 396 0.11
871 5 0.00
873 53 0.01
874 64 0.02
875 2 0.00
876 198 0.05
877 151 0.04
878 2 0.00
879 4 0.00
880 139 0.04
881 7 0.00
882 11 0.00
883 7 0.00
884 3 0.00
885 7 0.00
886 6 0.00
887 8 0.00
888 2 0.00
889 10 0.00
890 1 0.00
891 3 0.00
892 1 0.00
894 1 0.00
895 1 0.00
896 2 0.00
897 1 0.00
898 41 0.01
899 214 0.06
900 260 0.07
901 4 0.00
902 2 0.00
903 2 0.00
904 4 0.00
905 3 0.00
906 3 0.00
907 78 0.02
908 114 0.03
909 165 0.05
910 3 0.00
911 4 0.00
912 384 0.10
913 3 0.00
914 8 0.00
916 7 0.00
917 7 0.00
918 14 0.00
919 13 0.00
920 13 0.00
921 13 0.00
922 10 0.00
923 8 0.00
924 1 0.00
925 7 0.00
926 3 0.00
928 4 0.00
929 1 0.00
931 3 0.00
933 1 0.00
934 1 0.00
935 3 0.00
937 1 0.00
938 2 0.00
939 158 0.04
940 4 0.00
941 2 0.00
942 1 0.00
943 2 0.00
945 1 0.00
947 1 0.00
948 2 0.00
949 1 0.00
950 8 0.00
951 3 0.00
952 11 0.00
953 7 0.00
954 8 0.00
955 13 0.00
956 205 0.06
957 71 0.02
958 5 0.00
959 9 0.00
960 140 0.04
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (898 bp):
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCAGTCTCTCTGGCCGAAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTA
GGCATACGAGTTCATTCCCAGTCTAAGATCGACCAGATTGAGGGTTGCGACAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCAGCTCGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTCCGTGGTTGACTTAGGCTACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGATCGGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCAGC
ATTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTACGCACATGATGTGCGATGAGTGTGGTC
TGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
Found at i:1198151 original size:25 final size:26
Alignment explanation
Indices: 1198114--1198165 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1198104 GTTGACTTAG
1198114 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1198140 GCATAC-GAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1198165 G
1 G
1198166 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.