Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 104 of 120
Found at i:14870529 original size:23 final size:23
Alignment explanation
Indices: 14870486--14870529 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
14870476 AAGTGTTAAA
*
14870486 TATTGAAATTTAAATTTTAAATT
1 TATTGAAATTTAAATTCTAAATT
*
14870509 TATT-AAATATTAACTTCTAAA
1 TATTGAAAT-TTAAATTCTAAA
14870530 AGTGGAGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (23 bp):
TATTGAAATTTAAATTCTAAATT
Found at i:14876202 original size:16 final size:18
Alignment explanation
Indices: 14876181--14876215 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
14876171 TTTTACTTTC
14876181 TATTTTTA-ATTTT-TGT
1 TATTTTTATATTTTATGT
14876197 TATTTTTATATTTTATGT
1 TATTTTTATATTTTATGT
14876215 T
1 T
14876216 TTTCTATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 5 0.29
18 4 0.24
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (18 bp):
TATTTTTATATTTTATGT
Found at i:14877346 original size:20 final size:22
Alignment explanation
Indices: 14877295--14877346 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
14877285 TTGAATGGAA
14877295 TTTATATTATACTTTTTCTATAT
1 TTTATATT-TACTTTTTCTATAT
* *
14877318 TTCAAATTTA-TTTTTC-ATAT
1 TTTATATTTACTTTTTCTATAT
14877338 TTTATATTT
1 TTTATATTT
14877347 TGGCATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 11 0.44
21 6 0.24
22 2 0.08
23 6 0.24
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTATATTTACTTTTTCTATAT
Found at i:14877441 original size:11 final size:11
Alignment explanation
Indices: 14877425--14877466 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
14877415 AATCCCATAA
14877425 GAGATTTGTTT
1 GAGATTTGTTT
*
14877436 GAGATTTGTTA
1 GAGATTTGTTT
14877447 GAGATTTGTTT
1 GAGATTTGTTT
*
14877458 GGGATTTGT
1 GAGATTTGT
14877467 CAGATATTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:14877452 original size:22 final size:22
Alignment explanation
Indices: 14877424--14877466 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14877414 AAATCCCATA
14877424 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
*
14877446 AGAGATTTGTTTGGGATTTGT
1 AGAGATTTGTTTGAGATTTGT
14877467 CAGATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:14877578 original size:52 final size:52
Alignment explanation
Indices: 14877491--14877647 Score: 208
Period size: 52 Copynumber: 3.0 Consensus size: 52
14877481 TGGACAAGAA
* * *
14877491 GACTTGCAAAAGAAGAATTTCAAGA-GAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGGAAAG-GGATTCTTAATAGGCAAGTTT
* *
14877543 TACTTGCAAGAGAAGAATTTTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
* * * * *
14877595 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTTTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
14877647 G
1 G
14877648 TATGGTTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 87 0.95
53 5 0.05
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTTTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:14878229 original size:25 final size:25
Alignment explanation
Indices: 14878178--14878281 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 25
14878168 CAAGTGTATC
* * * *
14878178 AGAGTTGAAGGTTTAAAACGTGAGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* **
14878203 AGAGTTGAAGATTCAAGATGTGGGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* *
14878228 AGAGTCGATGGTTCAAGACATGGGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* *
14878253 ATAGTTGACA-GTTCAAGATATGGGA
1 AGAGTTGA-AGGTTCAAGACATGGGA
14878278 AGAG
1 AGAG
14878282 ATTGGTTGAG
Statistics
Matches: 63, Mismatches: 15, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.37, C:0.07, G:0.34, T:0.23
Consensus pattern (25 bp):
AGAGTTGAAGGTTCAAGACATGGGA
Found at i:14878523 original size:11 final size:11
Alignment explanation
Indices: 14878507--14878548 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
14878497 AATCCCATAA
14878507 GAGATTTGTTT
1 GAGATTTGTTT
*
14878518 GAGATTTGTTA
1 GAGATTTGTTT
14878529 GAGATTTGTTT
1 GAGATTTGTTT
*
14878540 GGGATTTGT
1 GAGATTTGT
14878549 CAGATATTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:14878534 original size:22 final size:22
Alignment explanation
Indices: 14878506--14878548 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14878496 AAATCCCATA
14878506 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
*
14878528 AGAGATTTGTTTGGGATTTGT
1 AGAGATTTGTTTGAGATTTGT
14878549 CAGATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:14878653 original size:52 final size:53
Alignment explanation
Indices: 14878573--14878729 Score: 203
Period size: 52 Copynumber: 3.0 Consensus size: 53
14878563 TGGACAAGAA
* * *
14878573 GACTTGCAAAAGAAGAATTTCAAGAGAAAGA-GGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
* *
14878625 TACTTGCAAGAGAAGAATTTTAAAAGAAA-AGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
* * * * *
14878677 GACTTACAGGAGAAGAATTCTAAGAG-GAGAGGGATTTTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
14878729 G
1 G
14878730 TATGGTTATA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.02
52 89 0.98
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (53 bp):
GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
Found at i:14879312 original size:25 final size:25
Alignment explanation
Indices: 14879261--14879364 Score: 84
Period size: 25 Copynumber: 4.2 Consensus size: 25
14879251 AAGTGGTATC
* * * *
14879261 AGAGTTGAAGGTTTAAAACGTGAGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* **
14879286 AGAGTTGAAGATTCAAGATGTGGGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* * *
14879311 AGAGTCGATGGTTCGAGACATGGGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* *
14879336 ATAGTTGACA-GTTCAAGATATGGGA
1 AGAGTTGA-AGGTTCAAGACATGGGA
14879361 AGAG
1 AGAG
14879365 ATTGGTTTGA
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.36, C:0.07, G:0.35, T:0.23
Consensus pattern (25 bp):
AGAGTTGAAGGTTCAAGACATGGGA
Found at i:14879607 original size:11 final size:11
Alignment explanation
Indices: 14879591--14879632 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
14879581 AATCCCATAA
14879591 GAGATTTGTTT
1 GAGATTTGTTT
*
14879602 GAGATTTGTTA
1 GAGATTTGTTT
14879613 GAGATTTGTTT
1 GAGATTTGTTT
*
14879624 GGGATTTGT
1 GAGATTTGT
14879633 CAGATATTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:14879618 original size:22 final size:22
Alignment explanation
Indices: 14879590--14879632 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14879580 AAATCCCATA
14879590 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
*
14879612 AGAGATTTGTTTGGGATTTGT
1 AGAGATTTGTTTGAGATTTGT
14879633 CAGATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:14879744 original size:52 final size:52
Alignment explanation
Indices: 14879657--14879813 Score: 208
Period size: 52 Copynumber: 3.0 Consensus size: 52
14879647 TGGACAAGAA
* * *
14879657 GACTTGCAAAAGAAGAATTTCAAGA-GAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGGAAAG-GGATTCTTAATAGGCAAGTTT
* *
14879709 TACTTGCAAGAGAAGAATTTTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
* * * * *
14879761 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTTTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
14879813 G
1 G
14879814 TATGGTTATA
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 87 0.95
53 5 0.05
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTTTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:14880396 original size:25 final size:25
Alignment explanation
Indices: 14880345--14880448 Score: 84
Period size: 25 Copynumber: 4.2 Consensus size: 25
14880335 AAGTGGTATC
* * * *
14880345 AGAGTTGAAGGTTTAAAACGTGAGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* **
14880370 AGAGTTGAAGATTCAAGATGTGGGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* * *
14880395 AGAGTCGATGGTTCGAGACATGGGA
1 AGAGTTGAAGGTTCAAGACATGGGA
* *
14880420 ATAGTTGACA-GTTCAAGATATGGGA
1 AGAGTTGA-AGGTTCAAGACATGGGA
14880445 AGAG
1 AGAG
14880449 ATTGGTTTGA
Statistics
Matches: 61, Mismatches: 17, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.36, C:0.07, G:0.35, T:0.23
Consensus pattern (25 bp):
AGAGTTGAAGGTTCAAGACATGGGA
Found at i:14880691 original size:11 final size:11
Alignment explanation
Indices: 14880675--14880716 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
14880665 AATCCCATAA
14880675 GAGATTTGTTT
1 GAGATTTGTTT
*
14880686 GAGATTTGTTA
1 GAGATTTGTTT
14880697 GAGATTTGTTT
1 GAGATTTGTTT
*
14880708 GGGATTTGT
1 GAGATTTGT
14880717 CAGATATTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:14880702 original size:22 final size:22
Alignment explanation
Indices: 14880674--14880716 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
14880664 AAATCCCATA
14880674 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
*
14880696 AGAGATTTGTTTGGGATTTGT
1 AGAGATTTGTTTGAGATTTGT
14880717 CAGATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:14880821 original size:52 final size:53
Alignment explanation
Indices: 14880741--14880897 Score: 203
Period size: 52 Copynumber: 3.0 Consensus size: 53
14880731 TGGACAAGAA
* * *
14880741 GACTTGCAAAAGAAGAATTTCAAGAGAAAGA-GGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
* *
14880793 TACTTGCAAGAGAAGAATTTTAAAAGAAA-AGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
* * * * *
14880845 GACTTACAGGAGAAGAATTCTAAGAG-GAGAGGGATTTTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
14880897 G
1 G
14880898 TATGGTTATA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.02
52 89 0.98
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (53 bp):
GACTTGCAAGAGAAGAATTTTAAGAGAAAGAGGGATTCTTAATAGGCAAGTTT
Found at i:14881519 original size:31 final size:31
Alignment explanation
Indices: 14881475--14881534 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
14881465 ATACACTGTT
**
14881475 AATGAATATGATGATACCATTTCATTAATGA
1 AATGAATATGATGATACCATCACATTAATGA
14881506 AATGAATCA-GATGATACCATCACATTAAT
1 AATGAAT-ATGATGATACCATCACATTAAT
14881535 AAGTAAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (31 bp):
AATGAATATGATGATACCATCACATTAATGA
Found at i:14883783 original size:59 final size:58
Alignment explanation
Indices: 14883598--14884011 Score: 463
Period size: 59 Copynumber: 6.9 Consensus size: 58
14883588 TGTTTTTATA
* * *
14883598 CAAGAAAAATTGATACTTTTAACTTTTCTTTAAAAAATATTGTTCTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTC-CTCAAAAATATT-TT-TTGAAAATTTTATTTT
* * * * * *
14883659 CAAGAAAAATTGATACTTTCAAATTTTTCTCCAAAAATGTTGTTCTGAAAATTGTATTAT
1 CAAGAAAAATTGATACTTTCAACTTTTCCT-CAAAAATATT-TTTTGAAAATTTTATTTT
* * * *
14883719 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAATATATTTTTTAAAAAATTTTATTTC
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT-GAAAATTTTATTTT
* * * **
14883778 CAAGGAAAATTGATATTTTCAACTTTTTCTCAAAAATATTTTTTTGAAGTTTTTA-TTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGAAAATTTTATTTT
*
14883836 CTAAGAAAAATTGATACTTTCAATTTTTCCTCAAAAATATCTTTTTG-AAATATTTATTTT
1 C-AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTGAAAAT-TTTATTTT
* *
14883896 CAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATCATTTTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATAT--TTTTTGAAAATTTTATTTT
* * *
14883956 TAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATATCTTTTTCGAAATATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTT-GAAA-ATTTT
14884012 CTTTATTTAT
Statistics
Matches: 300, Mismatches: 42, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
58 9 0.03
59 143 0.48
60 103 0.34
61 45 0.15
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.46
Consensus pattern (58 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTTATTTT
Found at i:14883792 original size:119 final size:117
Alignment explanation
Indices: 14883593--14884000 Score: 473
Period size: 119 Copynumber: 3.4 Consensus size: 117
14883583 ACTTATGTTT
* * * *
14883593 TTATACAAGAAAAATTGATACTTTTAACTTTTCTTTAAAAAATAT-TGTTCTTGAAAATTTTATT
1 TTAT-CAAGAAAAATTGATACTTTCAACTTTTC-CTCAAAAATATCT-TT-TTAAAAATTTTATT
* * * * *
14883657 TTCAAGAAAAATTGATACTTTCAAATTTTTCTCCAAAAATGTTGTTCTGAAAATTGTA
62 TTCAAGGAAAATTGATACTTTCAACTTTTTCT-CAAAAATATT-TTTTGAAAATTTTA
* * *
14883715 TTATCAAGGAAAATTGATACTTTCAACTTTTCCTCAAATATAT-TTTTTAAAAAATTTTATTTCC
1 TTATCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTT-AAAAATTTTATTTTC
* **
14883779 AAGGAAAATTGATATTTTCAACTTTTTCTCAAAAATATTTTTTTGAAGTTTTTA
65 AAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTGAAAATTTTA
* *
14883833 TT-TCTAAGAAAAATTGATACTTTCAATTTTTCCTCAAAAATATCTTTTT-GAAATATTTATTTT
1 TTATC-AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTAAAAAT-TTTATTTT
* *
14883896 CAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATCATTTTTGAAAATTTTA
64 CAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAATAT--TTTTTGAAAATTTTA
* * * *
14883952 TTTTTAAGAAAAATTGATACTTTCAATTTTTTCTCAAAAATATCTTTTT
1 TTATCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTT
14884001 CGAAATATTT
Statistics
Matches: 251, Mismatches: 27, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
117 7 0.03
118 98 0.39
119 106 0.42
120 10 0.04
121 26 0.10
122 4 0.02
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.46
Consensus pattern (117 bp):
TTATCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTAAAAATTTTATTTTCA
AGGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAAATTTTA
Found at i:14884673 original size:13 final size:12
Alignment explanation
Indices: 14884650--14884703 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
14884640 GGTAGGCCCA
14884650 TTTTT-TTTTAT
1 TTTTTATTTTAT
14884661 TTTTGTATTTTAT
1 TTTT-TATTTTAT
14884674 ATTTTTATTTATAT
1 -TTTTTATTT-TAT
*
14884688 TATTTA-TTTAT
1 TTTTTATTTTAT
14884699 TTTTT
1 TTTTT
14884704 GTATCTTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 11 0.30
12 3 0.08
13 16 0.43
14 7 0.19
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.80
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:14884694 original size:4 final size:4
Alignment explanation
Indices: 14884656--14884736 Score: 60
Period size: 4 Copynumber: 19.5 Consensus size: 4
14884646 CCCATTTTTT
*
14884656 TTTA TTT- TTGTA TTTTA TATT- TTTA TTTA TATTA TTTA TTTA TTTT
1 TTTA TTTA TT-TA -TTTA T-TTA TTTA TTTA T-TTA TTTA TTTA TTTA
* *
14884702 TTGTA TCTTG TGTA TTTA -TTA TTTA TTTA TTTA TT
1 TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TT
14884737 ATTATTTTCG
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
3 7 0.11
4 40 0.65
5 12 0.19
6 3 0.05
ACGTcount: A:0.21, C:0.01, G:0.05, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:14884739 original size:22 final size:22
Alignment explanation
Indices: 14884649--14884744 Score: 69
Period size: 22 Copynumber: 4.4 Consensus size: 22
14884639 GGGTAGGCCC
*
14884649 ATTTTTTTTTATTT-T-TGTATT
1 ATTTATTTTTATTTATAT-TATT
14884670 -TTATATTTTTATTTATATTATTT
1 ATT-TATTTTTATTTATATTA-TT
* * *
14884693 ATTTATTTTT-TGTATCTTGTGT
1 ATTTATTTTTATTTATATTAT-T
14884715 ATTTATTATTTATTTAT-TTATT
1 ATTTATT-TTTATTTATATTATT
14884737 A-TTATTTT
1 ATTTATTTT
14884745 CGGTTGAGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
20 4 0.07
21 16 0.26
22 19 0.31
23 16 0.26
24 6 0.10
ACGTcount: A:0.21, C:0.01, G:0.04, T:0.74
Consensus pattern (22 bp):
ATTTATTTTTATTTATATTATT
Found at i:14885582 original size:15 final size:15
Alignment explanation
Indices: 14885564--14885601 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
14885554 TTTAGTACTT
*
14885564 TTTA-TTTTATTTTTC
1 TTTATTTTTA-TTTTA
14885579 TTTATTTTTATTTTA
1 TTTATTTTTATTTTA
14885594 TTTATTTT
1 TTTATTTT
14885602 CTTTAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 16 0.76
16 5 0.24
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTATTTTTATTTTA
Found at i:14885684 original size:59 final size:57
Alignment explanation
Indices: 14885620--14886011 Score: 509
Period size: 58 Copynumber: 6.8 Consensus size: 57
14885610 AAAATTCAAA
*
14885620 AAAAAATATTTTTAAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTTT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTT
* *
14885678 AAAAAAATATTTTTGAGGAATAGTTGAAAGTATCAA-TTTTCTTTGAAAATAAGTTTTTCT
1 -AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAG-TTTT-T
* * * *
14885738 AAAAAATATTTTTGAGGAAAAGTTGAAAGCATCAATTTTTTTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTT
* * * * *
14885796 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAGAATAAGTCTTC
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTT
* *
14885853 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATTTTTCT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTT-T
* * * *
14885911 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAGTTTTT
* * *
14885969 AAAAAATA-TTTTGAGAAAAAATTGAAAGTATCAATTTTTCTTG
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTG
14886012 TACAAAAGCA
Statistics
Matches: 296, Mismatches: 32, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
57 84 0.28
58 108 0.36
59 99 0.33
60 5 0.02
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (57 bp):
AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTT
Found at i:14885841 original size:30 final size:30
Alignment explanation
Indices: 14885807--14885897 Score: 75
Period size: 30 Copynumber: 3.1 Consensus size: 30
14885797 AAAAATATTT
14885807 TTGAGAAAAAGTTGAAAGTATCAATTTTTC
1 TTGAGAAAAAGTTGAAAGTATCAATTTTTC
* * *
14885837 TTGAGAATAAGTCTTCAAA--A--AATATTT-
1 TTGAGAAAAAG--TTGAAAGTATCAATTTTTC
* * *
14885864 TTAAGGAAAAGTTGAAAGTATCAATTTTCC
1 TTGAGAAAAAGTTGAAAGTATCAATTTTTC
14885894 TTGA
1 TTGA
14885898 AAATAATTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 14
0.65 0.15 0.21
Matches are distributed among these distances:
25 5 0.11
27 9 0.20
28 6 0.14
29 5 0.11
30 14 0.32
32 5 0.11
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.36
Consensus pattern (30 bp):
TTGAGAAAAAGTTGAAAGTATCAATTTTTC
Found at i:14885898 original size:115 final size:114
Alignment explanation
Indices: 14885620--14886011 Score: 556
Period size: 115 Copynumber: 3.4 Consensus size: 114
14885610 AAAATTCAAA
* *
14885620 AAAAAATATTTTTAAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTTTAAAAAAA
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT-AAAAAA
*
14885685 TATTTTTGAGGAATAGTTGAAAGTATCAA-TTTTCTTTGAAAATAAGTTTTTCT
65 TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC-TTG-AAATAAG--TTTCT
* * *
14885738 AAAAAATATTTTTGAGGAAAAGTTGAAAGCATCAATTTTTTTTGAAAATAAGCTTTCTAAAAAAT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAAT
*
14885803 ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAGAATAAGTCTTC-
66 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGA-AATAAGT-TTCT
* **
14885853 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAATTTTTCTAAAAAAT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAAT
*
14885918 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCT
66 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAA-T-AAGTTTCT
* * *
14885969 AAAAAATA-TTTTGAGAAAAAATTGAAAGTATCAATTTTTCTTG
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTG
14886012 TACAAAAGCA
Statistics
Matches: 249, Mismatches: 19, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
114 2 0.01
115 131 0.53
116 16 0.06
117 42 0.17
118 58 0.23
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (114 bp):
AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAAT
ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAATAAGTTTCT
Found at i:14892291 original size:19 final size:19
Alignment explanation
Indices: 14892248--14892294 Score: 78
Period size: 18 Copynumber: 2.5 Consensus size: 19
14892238 ATCTTGCATC
*
14892248 AAAAGATCAAGTTTAATGT
1 AAAAGATCAAGTTTAATAT
14892267 -AAAGATCAAGTTTAATAT
1 AAAAGATCAAGTTTAATAT
14892285 AAAAGATCAA
1 AAAAGATCAA
14892295 TTAGTAGTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.53, C:0.06, G:0.13, T:0.28
Consensus pattern (19 bp):
AAAAGATCAAGTTTAATAT
Found at i:14896767 original size:37 final size:37
Alignment explanation
Indices: 14896704--14896776 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
14896694 CTCAAAACAA
* * **
14896704 ATTTTATATATAATAATATTAGGTAAATTTATTTTAG
1 ATTTCATATATAATAATATTAAGTAAAGATATTTTAG
*
14896741 ATTTCATATGTAATAATATTAAGTAAAGATATTTTA
1 ATTTCATATATAATAATATTAAGTAAAGATATTTTA
14896777 CTTTTTATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.42, C:0.01, G:0.08, T:0.48
Consensus pattern (37 bp):
ATTTCATATATAATAATATTAAGTAAAGATATTTTAG
Found at i:14896792 original size:9 final size:9
Alignment explanation
Indices: 14896778--14896808 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14896768 GATATTTTAC
14896778 TTTTTATTT
1 TTTTTATTT
14896787 TTTTTATTT
1 TTTTTATTT
*
14896796 TTTTAATTT
1 TTTTTATTT
14896805 TTTT
1 TTTT
14896809 AACATAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTATTT
Found at i:14896995 original size:69 final size:70
Alignment explanation
Indices: 14896845--14896996 Score: 198
Period size: 69 Copynumber: 2.2 Consensus size: 70
14896835 AAAAGTTGTC
* * *
14896845 TTTTTAACAAAAATTATGTTTTTATCTTATAAACGTTATCTTCATTGAATTTTGAAAAATATATT
1 TTTTTAACAAAAATTATGTTTTTATCTTAGAAAC--TATCTTCATTAAATTCTGAAAAATATATT
*
14896910 TTTCGTA
64 TTTCATA
* ** *
14896917 TTTTCAACAAAAATTATGTTTTTATCTTAGAAAC-ATCTTTTTTAAATTCTGAAAAATATTTTTT
1 TTTTTAACAAAAATTATGTTTTTATCTTAGAAACTATCTTCATTAAATTCTGAAAAATATATTTT
*
14896981 TCATG
66 TCATA
14896986 TTTTTAACAAA
1 TTTTTAACAAA
14896997 TATTGCATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
69 38 0.54
72 32 0.46
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (70 bp):
TTTTTAACAAAAATTATGTTTTTATCTTAGAAACTATCTTCATTAAATTCTGAAAAATATATTTT
TCATA
Found at i:14897130 original size:70 final size:71
Alignment explanation
Indices: 14897048--14897203 Score: 210
Period size: 70 Copynumber: 2.2 Consensus size: 71
14897038 ACTATGTTTT
* *
14897048 TTTTTATCTTAGAAACACT-GTTTTTCTTGAATTAT-GAAAATTATTTTTTCATGTTTT-AACAA
1 TTTTTATCTTAGAAA-ACTCATCTTTCTTGAATTATAGAAAA-TATTTTTTCATGTTTTCAACAA
*
14897110 AAACTACA
64 AAAATACA
* * *
14897118 TTTTTATCTTAGAAATCTCATCTTTGTTGAATTTTAGAAAATATTTTTTCATGTTTTCAACAAAA
1 TTTTTATCTTAGAAAACTCATCTTTCTTGAATTATAGAAAATATTTTTTCATGTTTTCAACAAAA
14897183 AATACA
66 AATACA
*
14897189 ATTTTATCTTAGAAA
1 TTTTTATCTTAGAAA
14897204 TGTAGTCTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
69 2 0.03
70 43 0.57
71 31 0.41
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (71 bp):
TTTTTATCTTAGAAAACTCATCTTTCTTGAATTATAGAAAATATTTTTTCATGTTTTCAACAAAA
AATACA
Found at i:14897203 original size:185 final size:181
Alignment explanation
Indices: 14896889--14897297 Score: 457
Period size: 185 Copynumber: 2.2 Consensus size: 181
14896879 GTTATCTTCA
* * * **
14896889 TTGAATTTTGAAAAATATATTTTTCGTATTTTCAACAAAAATTATGTTTTTATCTTAGAAACATC
1 TTGAATTTTG-AAAATAT-TTTTTCATGTTTTCAACAAAAACTACATTTTTATCTTAGAAACATC
* * * * * * *
14896954 TTTTTTAAATTCTGAAAAATATTTTTTTCATGTTTTTAACAAATATTGCATTTTTATTTTAGAAA
64 TTTGTTAAATTCTGAAAAATATTTTTTTCATGTTTTCAACAAAAAATACAATTTTATCTTAGAAA
* * *
14897019 TATTA-TATTTTCAATAAAAACTATGTTTTTTTTTATCTTAGAAACACTGTTTTTC
129 T-GTAGTATTTTCAACAAAAAC--TGTATTTTTTTATCTTAGAAACACTGTTTTTC
*
14897074 TTGAATTATGAAAATTATTTTTTCATGTTTT-AACAAAAACTACATTTTTATCTTAGAAATCTCA
1 TTGAATTTTGAAAA-TATTTTTTCATGTTTTCAACAAAAACTACATTTTTATCTTAGAAA---CA
* *
14897138 TCTTTGTTGAATT-TTAGAAAATA-TTTTTTCATGTTTTCAACAAAAAATACAATTTTATCTTAG
62 TCTTTGTTAAATTCTGA-AAAATATTTTTTTCATGTTTTCAACAAAAAATACAATTTTATCTTAG
* ** *
14897201 AAATGTAGTCTTTTCAACAAAAACTGTATTTTTTTATCTTAGAAACGTTGTTTTTG
126 AAATGTAGTATTTTCAACAAAAACTGTATTTTTTTATCTTAGAAACACTGTTTTTC
* * *
14897257 TTTAATTTTGGAAAACATTTTTTTCATGTTTTCAATAAAAA
1 TTGAATTTT-GAAAATA-TTTTTTCATGTTTTCAACAAAAA
14897298 AACACATAGA
Statistics
Matches: 189, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
183 61 0.32
184 36 0.19
185 73 0.39
186 19 0.10
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (181 bp):
TTGAATTTTGAAAATATTTTTTCATGTTTTCAACAAAAACTACATTTTTATCTTAGAAACATCTT
TGTTAAATTCTGAAAAATATTTTTTTCATGTTTTCAACAAAAAATACAATTTTATCTTAGAAATG
TAGTATTTTCAACAAAAACTGTATTTTTTTATCTTAGAAACACTGTTTTTC
Found at i:14898407 original size:11 final size:11
Alignment explanation
Indices: 14898391--14898430 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
14898381 TCAATTGGCC
14898391 TAAAGTAAATT
1 TAAAGTAAATT
14898402 TAAAGTAAATT
1 TAAAGTAAATT
* *
14898413 ACAAACTAAATT
1 -TAAAGTAAATT
14898425 TAAAGT
1 TAAAGT
14898431 TTAATTCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (11 bp):
TAAAGTAAATT
Found at i:14898746 original size:24 final size:24
Alignment explanation
Indices: 14898716--14898763 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14898706 TCAAGCTTGG
*
14898716 GGTTTGAGGTGGTCGACTATTGTT
1 GGTTTGAGGTGGCCGACTATTGTT
*
14898740 GGTTTGAGGTGGCCGGCTATTGTT
1 GGTTTGAGGTGGCCGACTATTGTT
14898764 AGATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.10, C:0.10, G:0.40, T:0.40
Consensus pattern (24 bp):
GGTTTGAGGTGGCCGACTATTGTT
Found at i:14899170 original size:17 final size:16
Alignment explanation
Indices: 14899141--14899175 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
14899131 TTTTGGGGTA
*
14899141 ATTTTTTTAATTTTTG
1 ATTTTTTAAATTTTTG
14899157 ATTTTTTAATATTTTTG
1 ATTTTTTAA-ATTTTTG
14899174 AT
1 AT
14899176 AAGTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (16 bp):
ATTTTTTAAATTTTTG
Found at i:14903179 original size:16 final size:17
Alignment explanation
Indices: 14903143--14903185 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
14903133 AATAATAACA
*
14903143 ATCATATAAATATATAAT
1 ATCATACAAATATAT-AT
14903161 ATCATACAAATATAT-T
1 ATCATACAAATATATAT
14903177 ATCATACAA
1 ATCATACAA
14903186 TAATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
ATCATACAAATATATAT
Found at i:14903190 original size:18 final size:17
Alignment explanation
Indices: 14903143--14903192 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
14903133 AATAATAACA
* *
14903143 ATCATATAAATATATAAT
1 ATCATACAAA-ATATATT
14903161 ATCATAC-AAATATATT
1 ATCATACAAAATATATT
14903177 ATCATACAATAATATA
1 ATCATACAA-AATATA
14903193 AAATACCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.46
17 3 0.11
18 12 0.43
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (17 bp):
ATCATACAAAATATATT
Found at i:14903191 original size:16 final size:17
Alignment explanation
Indices: 14903151--14903191 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
14903141 CAATCATATA
*
14903151 AATATATAATATCATAC
1 AATATATATTATCATAC
14903168 AA-ATATATTATCATAC
1 AATATATATTATCATAC
14903184 AATA-ATAT
1 AATATATAT
14903192 AAAATACCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (17 bp):
AATATATATTATCATAC
Found at i:14903502 original size:33 final size:33
Alignment explanation
Indices: 14903459--14903529 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
14903449 AAATAAATAT
* *
14903459 ATAATCATGCAATTAACA-ATGTAAATCATGCAA
1 ATAAACATGCAATTAA-ATATATAAATCATGCAA
*
14903492 ATAAACATGCAATTAAATTTATAAATCATGCAA
1 ATAAACATGCAATTAAATATATAAATCATGCAA
14903525 ATAAA
1 ATAAA
14903530 TATATAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 1 0.03
33 33 0.97
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.28
Consensus pattern (33 bp):
ATAAACATGCAATTAAATATATAAATCATGCAA
Found at i:14903522 original size:21 final size:20
Alignment explanation
Indices: 14903492--14903553 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 20
14903482 AATCATGCAA
* *
14903492 ATAAACATGCAATTAAATTT
1 ATAAACATGCAAATAAATAT
14903512 ATAAATCATGCAAATAAATAT
1 ATAAA-CATGCAAATAAATAT
*
14903533 ATAAACCATACAAATAAATAT
1 ATAAA-CATGCAAATAAATAT
14903554 GCAATTAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 5 0.14
21 32 0.86
ACGTcount: A:0.56, C:0.11, G:0.03, T:0.29
Consensus pattern (20 bp):
ATAAACATGCAAATAAATAT
Found at i:14903574 original size:20 final size:21
Alignment explanation
Indices: 14903546--14903603 Score: 64
Period size: 20 Copynumber: 2.7 Consensus size: 21
14903536 AACCATACAA
*
14903546 ATAAATATGCAATTA-AATAT
1 ATAAATATGCAAATAGAATAT
*
14903566 ATAATTATGCAAATAGTAATAT
1 ATAAATATGCAAATAG-AATAT
*
14903588 ATAAACTGTGCAAATA
1 ATAAA-TATGCAAATA
14903604 AACATGCAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 13 0.42
22 9 0.29
23 9 0.29
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (21 bp):
ATAAATATGCAAATAGAATAT
Found at i:14903604 original size:55 final size:54
Alignment explanation
Indices: 14903438--14903635 Score: 222
Period size: 54 Copynumber: 3.6 Consensus size: 54
14903428 ATAAATAATT
* * * * *
14903438 AATAATCATGCAAATAAATATAT-AATCATGCAATTAACA-ATGTAAATCATGCA
1 AATAAACATGCAATTAAATATATAAATCATGCAAATAA-ATATATAAACCATGCA
* *
14903491 AATAAACATGCAATTAAATTTATAAATCATGCAAATAAATATATAAACCATACA
1 AATAAACATGCAATTAAATATATAAATCATGCAAATAAATATATAAACCATGCA
* * **
14903545 AATAAATATGCAATTAAATATAT-AATTATGCAAATAGTAATATATAAACTGTGCA
1 AATAAACATGCAATTAAATATATAAATCATGCAAATA--AATATATAAACCATGCA
*
14903600 AATAAACATGCAAATAATAATATATAAATCATGCAA
1 AATAAACATGC-AATTA-AATATATAAATCATGCAA
14903636 TCATGTAAAT
Statistics
Matches: 122, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
53 33 0.27
54 45 0.37
55 24 0.20
56 4 0.03
57 7 0.06
58 9 0.07
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.29
Consensus pattern (54 bp):
AATAAACATGCAATTAAATATATAAATCATGCAAATAAATATATAAACCATGCA
Found at i:14903635 original size:35 final size:30
Alignment explanation
Indices: 14903572--14903659 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 30
14903562 ATATATAATT
* *
14903572 ATGCAAATAGTAATATATAAACTGTGCAAATAAAC
1 ATGCAAATAATAATATATAAAC-ATGC-AAT---C
14903607 ATGCAAATAATAATATATAAATCATGCAATC
1 ATGCAAATAATAATATATAAA-CATGCAATC
*
14903638 ATGTAAATAATAATATATAAAC
1 ATGCAAATAATAATATATAAAC
14903660 CATGTGAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
30 1 0.02
31 21 0.43
34 3 0.06
35 23 0.47
36 1 0.02
ACGTcount: A:0.53, C:0.10, G:0.08, T:0.28
Consensus pattern (30 bp):
ATGCAAATAATAATATATAAACATGCAATC
Found at i:14903716 original size:20 final size:20
Alignment explanation
Indices: 14903670--14903717 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
14903660 CATGTGAAAT
*
14903670 ATGCAATTAAATATATAATC
1 ATGCAAATAAATATATAATC
* *
14903690 ATACAAATATAATAT-TAGTC
1 ATGCAAATA-AATATATAATC
14903710 ATGCAAAT
1 ATGCAAAT
14903718 TCATGAAAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.50, C:0.10, G:0.06, T:0.33
Consensus pattern (20 bp):
ATGCAAATAAATATATAATC
Found at i:14904370 original size:13 final size:12
Alignment explanation
Indices: 14904337--14904376 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
14904327 TTTCATTAAA
14904337 AAACTAAAAATT
1 AAACTAAAAATT
*
14904349 AAACCAAAAATT
1 AAACTAAAAATT
14904361 AAACTAAAAAATT
1 AAACT-AAAAATT
14904374 AAA
1 AAA
14904377 ATACAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (12 bp):
AAACTAAAAATT
Found at i:14905781 original size:20 final size:22
Alignment explanation
Indices: 14905730--14905781 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
14905720 TTGAATGGAA
14905730 TTTATATTATACTTTTTCTATAT
1 TTTATATT-TACTTTTTCTATAT
* *
14905753 TTCAAATTTA-TTTTTC-ATAT
1 TTTATATTTACTTTTTCTATAT
14905773 TTTATATTT
1 TTTATATTT
14905782 TGGCATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 11 0.44
21 6 0.24
22 2 0.08
23 6 0.24
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTATATTTACTTTTTCTATAT
Found at i:14906517 original size:16 final size:16
Alignment explanation
Indices: 14906496--14906528 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14906486 ATGTTTGTGA
14906496 ACATATATATGATCAC
1 ACATATATATGATCAC
14906512 ACATATATATGATCAC
1 ACATATATATGATCAC
14906528 A
1 A
14906529 AAAATAGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.30
Consensus pattern (16 bp):
ACATATATATGATCAC
Found at i:14908120 original size:18 final size:19
Alignment explanation
Indices: 14908097--14908132 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14908087 ATGTTGTTCT
14908097 GAAAATTG-TATTATCAAG
1 GAAAATTGATATTATCAAG
*
14908115 GAAAATTGATATTTTCAA
1 GAAAATTGATATTATCAA
14908133 CTTTTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (19 bp):
GAAAATTGATATTATCAAG
Found at i:14908185 original size:59 final size:59
Alignment explanation
Indices: 14908051--14908301 Score: 291
Period size: 59 Copynumber: 4.3 Consensus size: 59
14908041 TGCTTTTATA
* * * * *
14908051 TAAGAAAAATTGATACTTTCAATTTTTCTT-AAAAAAATGTTGTTCTGAAAATTGTATTATC
1 TAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATAT-TT-TTTTGAAAATTTTATT-TC
* *
14908112 -AAGGAAAATTGATATTTTCAACTTTTCTTCAAATATATTTTTTTGAAAATTTTATTTC
1 TAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTTGAAAATTTTATTTC
**
14908170 TAAGGAAAATTGATA--TTCAACATTTTC-TCAAAAATATTTTTTTGAAGTTTTTATTTC
1 TAAGGAAAATTGATACTTTCAAC-TTTTCTTCAAAAATATTTTTTTGAAAATTTTATTTC
* * *
14908227 TAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTG-AAATATTTATTT-
1 TAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTTGAAAAT-TTTATTTC
14908285 TCAAGGAAAATTGATAC
1 T-AAGGAAAATTGATAC
14908302 AAAAAATTGA
Statistics
Matches: 167, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
57 47 0.28
58 15 0.09
59 71 0.43
60 28 0.17
61 6 0.04
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (59 bp):
TAAGGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTTGAAAATTTTATTTC
Found at i:14908307 original size:72 final size:73
Alignment explanation
Indices: 14908231--14908373 Score: 216
Period size: 72 Copynumber: 2.0 Consensus size: 73
14908221 TATTTCTAAG
* * *
14908231 AAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TCTTTTTGAAATATTTATTTTCAAGGAAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAA
14908295 TTGATACA
66 TTGATACA
* * * *
14908303 AAAAATTGATATTTTTAACTTTTCCTCAAAAATACCCTTTTTAAAATTTTTATTTTTAAGAAAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAA
14908368 TTGATA
66 TTGATA
14908374 TTTTTATTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 32 0.51
73 31 0.49
ACGTcount: A:0.41, C:0.11, G:0.06, T:0.43
Consensus pattern (73 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAA
TTGATACA
Found at i:14908400 original size:13 final size:12
Alignment explanation
Indices: 14908381--14908414 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
14908371 ATATTTTTAT
14908381 TTTTTTTAAATA
1 TTTTTTTAAATA
14908393 TCTTTTTTGAAATA
1 T-TTTTTT-AAATA
14908407 TTTTTTTA
1 TTTTTTTA
14908415 TTTATTTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 2 0.10
13 12 0.60
14 6 0.30
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (12 bp):
TTTTTTTAAATA
Found at i:14908400 original size:14 final size:13
Alignment explanation
Indices: 14908378--14908413 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
14908368 TTGATATTTT
*
14908378 TATTTTTTTTAAA
1 TATTTTTTTGAAA
14908391 TATCTTTTTTGAAA
1 TAT-TTTTTTGAAA
14908405 TATTTTTTT
1 TATTTTTTT
14908414 ATTTATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (13 bp):
TATTTTTTTGAAA
Found at i:14911392 original size:37 final size:37
Alignment explanation
Indices: 14911327--14911399 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
14911317 CTTAAAACAA
* * *
14911327 ATTTTATATATAATAATATTAGGTAAATATATTTTAG
1 ATTTCATATATAATAATATTAAGCAAATATATTTTAG
*
14911364 ATTTCATATGTAATAATATTAAGCAAATATATTTTA
1 ATTTCATATATAATAATATTAAGCAAATATATTTTA
14911400 CTTTTTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.47
Consensus pattern (37 bp):
ATTTCATATATAATAATATTAAGCAAATATATTTTAG
Found at i:14911539 original size:72 final size:69
Alignment explanation
Indices: 14911458--14911634 Score: 194
Period size: 72 Copynumber: 2.5 Consensus size: 69
14911448 AAAAGTTGTC
* * * *
14911458 TTTTTAACAAAAATTACGTTTTTATCTTATAAACGTTATCTTCATTGAATTTTGAAAAATATATT
1 TTTTCAACAAAAATTACGTTTTTATCTTAGAAAC---ATCTTCATTAAATTCTGAAAAATATATT
14911523 TTTCGTA
63 TTTCGTA
* *
14911530 TTTTCAACAAAAATTACGTTTTTATCTTAGAAACATCTTCTTTAAATTCTGAAAAATATTTTTTT
1 TTTTCAACAAAAATTACGTTTTTATCTTAGAAACATCTTCATTAAATTCTGAAAAATA--TATTT
14911595 TTCATGT-
64 TTC--GTA
* * * *
14911602 TTTTTAACAAAGATTGCATTTTTATCTTAGAAA
1 TTTTCAACAAAAATTACGTTTTTATCTTAGAAA
14911635 TATTATATTT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
69 21 0.23
71 7 0.08
72 61 0.67
73 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (69 bp):
TTTTCAACAAAAATTACGTTTTTATCTTAGAAACATCTTCATTAAATTCTGAAAAATATATTTTT
CGTA
Found at i:14911769 original size:72 final size:73
Alignment explanation
Indices: 14911662--14911821 Score: 247
Period size: 72 Copynumber: 2.2 Consensus size: 73
14911652 AAACTATGTT
*
14911662 TTTTTATCTTAGAAA-CACTATTTTTCTTGAATTCTAAAAATTATTTTTTTTCATGTTTT-AAC-
1 TTTTTATCTTAGAAATCACTATTTTTCTTGAATTCTAAAAA--ATATTTTTTCATGTTTTCAACA
14911724 AAAAACTACA
64 AAAAACTACA
* *
14911734 TTTTTATCTTAGAAATCTC-ATTTTTGTTGAATTCTAAAAAATATTTTTTCATGTTTTCAACAAA
1 TTTTTATCTTAGAAATCACTATTTTTCTTGAATTCTAAAAAATATTTTTTCATGTTTTCAACAAA
14911798 AAACTACA
66 AAACTACA
14911806 TTTTTATCTTAGAAAT
1 TTTTTATCTTAGAAAT
14911822 GTAGTCTTTT
Statistics
Matches: 82, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
70 16 0.20
71 3 0.04
72 61 0.74
73 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (73 bp):
TTTTTATCTTAGAAATCACTATTTTTCTTGAATTCTAAAAAATATTTTTTCATGTTTTCAACAAA
AAACTACA
Found at i:14912362 original size:5 final size:5
Alignment explanation
Indices: 14912354--14912379 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14912344 AAATGAAATT
14912354 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
14912380 ACAAGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:14913025 original size:11 final size:11
Alignment explanation
Indices: 14913009--14913048 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
14912999 TCAATTGGCC
14913009 TAAAGTAAATT
1 TAAAGTAAATT
14913020 TAAAGTAAATT
1 TAAAGTAAATT
* *
14913031 ACAAACTAAATT
1 -TAAAGTAAATT
14913043 TAAAGT
1 TAAAGT
14913049 TTAATTCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (11 bp):
TAAAGTAAATT
Found at i:14913363 original size:24 final size:24
Alignment explanation
Indices: 14913333--14913380 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
14913323 TCAAGCTTGG
* *
14913333 GGTTTGAGGTGGTCGACTATTGTT
1 GGTTTGAGATGGCCGACTATTGTT
*
14913357 GGTTTGAGATGGCCGGCTATTGTT
1 GGTTTGAGATGGCCGACTATTGTT
14913381 AGATTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.10, G:0.38, T:0.40
Consensus pattern (24 bp):
GGTTTGAGATGGCCGACTATTGTT
Found at i:14916524 original size:15 final size:15
Alignment explanation
Indices: 14916504--14916534 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14916494 ATAGCTATAA
14916504 TTAAGATTCTTTTTG
1 TTAAGATTCTTTTTG
*
14916519 TTAAGATTGTTTTTG
1 TTAAGATTCTTTTTG
14916534 T
1 T
14916535 GATAATTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.16, T:0.61
Consensus pattern (15 bp):
TTAAGATTCTTTTTG
Found at i:14917767 original size:16 final size:17
Alignment explanation
Indices: 14917731--14917773 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
14917721 AATAATAACA
*
14917731 ATCATATAAATATATAAT
1 ATCATACAAATATAT-AT
14917749 ATCATACAAATATAT-T
1 ATCATACAAATATATAT
14917765 ATCATACAA
1 ATCATACAA
14917774 TAATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
ATCATACAAATATATAT
Found at i:14917778 original size:18 final size:17
Alignment explanation
Indices: 14917731--14917780 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
14917721 AATAATAACA
* *
14917731 ATCATATAAATATATAAT
1 ATCATACAAA-ATATATT
14917749 ATCATAC-AAATATATT
1 ATCATACAAAATATATT
14917765 ATCATACAATAATATA
1 ATCATACAA-AATATA
14917781 AAATACCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.46
17 3 0.11
18 12 0.43
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (17 bp):
ATCATACAAAATATATT
Found at i:14917779 original size:16 final size:17
Alignment explanation
Indices: 14917739--14917779 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
14917729 CAATCATATA
*
14917739 AATATATAATATCATAC
1 AATATATATTATCATAC
14917756 AA-ATATATTATCATAC
1 AATATATATTATCATAC
14917772 AATA-ATAT
1 AATATATAT
14917780 AAAATACCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (17 bp):
AATATATATTATCATAC
Found at i:14918071 original size:20 final size:20
Alignment explanation
Indices: 14918037--14918262 Score: 81
Period size: 20 Copynumber: 12.1 Consensus size: 20
14918027 TCACACAAAT
*
14918037 AAATAATTA-ATAATCATGC
1 AAATAAATATATAATCATGC
14918056 AAATAAATATATAATCATGC
1 AAATAAATATATAATCATGC
* *
14918076 AATTAACA-ATGTAAATCATGC
1 AAATAA-ATATAT-AATCATGC
14918097 -----AA-ATA-AA-CATGC
1 AAATAAATATATAATCATGC
* *
14918109 AATTAAATTTATAAATCATGC
1 AAATAAATATAT-AATCATGC
14918130 AAATAAATATATAA--A--C
1 AAATAAATATATAATCATGC
**
14918146 -CTTACAA-ATA-AAT-ATGC
1 AAATA-AATATATAATCATGC
*
14918163 AATTAAATATATAATCATGC
1 AAATAAATATATAATCATGC
*
14918183 AAATAGTAATATATAAAC-TG-
1 AAATA--AATATATAATCATGC
*
14918203 ---TGCAA-ATA-AA-CATGC
1 AAAT-AAATATATAATCATGC
*
14918218 AATTAAATATATAATCATGC
1 AAATAAATATATAATCATGC
14918238 AAATAATAATATATAAATCATGC
1 AAAT-A-AATATAT-AATCATGC
14918261 AA
1 AA
14918263 TCATGTAAAT
Statistics
Matches: 158, Mismatches: 15, Indels: 64
0.67 0.06 0.27
Matches are distributed among these distances:
12 5 0.03
13 3 0.02
14 6 0.04
15 12 0.08
16 6 0.04
17 8 0.05
18 13 0.08
19 13 0.08
20 38 0.24
21 27 0.17
22 17 0.11
23 10 0.06
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (20 bp):
AAATAAATATATAATCATGC
Found at i:14918109 original size:33 final size:33
Alignment explanation
Indices: 14918066--14918243 Score: 105
Period size: 33 Copynumber: 5.1 Consensus size: 33
14918056 AAATAAATAT
* *
14918066 ATAATCATGCAATTAACA-ATGTAAATCATGCAA
1 ATAAACATGCAATTAA-ATATATAAATCATGCAA
*
14918099 ATAAACATGCAATTAAATTTATAAATCATGCAA
1 ATAAACATGCAATTAAATATATAAATCATGCAA
* ** **
14918132 ATAAATATATAAACCTTACAA-ATA-AATATGCAATTAAA
1 ATAAACAT-GCAA--TTA-AATATATAA-AT-C-ATGCAA
* *
14918170 TATATAATCATGCAAATAGTAATATATAAA-CTGTGCAA
1 -ATA-AA-CATGCAATTA--AATATATAAATC-ATGCAA
14918208 ATAAACATGCAATTAAATATAT-AATCATGCAA
1 ATAAACATGCAATTAAATATATAAATCATGCAA
14918240 ATAA
1 ATAA
14918244 TAATATATAA
Statistics
Matches: 110, Mismatches: 20, Indels: 31
0.68 0.12 0.19
Matches are distributed among these distances:
32 12 0.11
33 43 0.39
34 2 0.02
35 11 0.10
36 9 0.08
37 6 0.05
38 10 0.09
39 5 0.05
40 8 0.07
41 4 0.04
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (33 bp):
ATAAACATGCAATTAAATATATAAATCATGCAA
Found at i:14918211 original size:55 final size:54
Alignment explanation
Indices: 14918045--14918254 Score: 273
Period size: 55 Copynumber: 3.9 Consensus size: 54
14918035 ATAAATAATT
* * * * * * *
14918045 AATAATCATGCAAATAAATATATAATCATGCAATTAACAATGTA-AATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAACTTGCA
* *
14918098 AATAAACATGCAATTAAATTTATAAATCATGCAAAT-A-AATATATAAACCTTACA
1 AATAAACATGCAATTAAATATAT-AATCATGCAAATAATAATATATAAA-CTTGCA
* *
14918152 AATAAATATGCAATTAAATATATAATCATGCAAATAGTAATATATAAACTGTGCA
1 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAACT-TGCA
14918207 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAA
1 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAA
14918255 TCATGCAATC
Statistics
Matches: 137, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
52 5 0.04
53 35 0.26
54 38 0.28
55 59 0.43
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (54 bp):
AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAACTTGCA
Found at i:14918260 original size:23 final size:22
Alignment explanation
Indices: 14918208--14918262 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
14918198 AACTGTGCAA
*
14918208 ATAAA-CATGC-AATTAAATAT
1 ATAAATCATGCAAATAAAATAT
14918228 AT-AATCATGCAAATAATAATAT
1 ATAAATCATGCAAATAA-AATAT
14918250 ATAAATCATGCAA
1 ATAAATCATGCAA
14918263 TCATGTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.07
20 7 0.23
21 4 0.13
22 7 0.23
23 10 0.33
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (22 bp):
ATAAATCATGCAAATAAAATAT
Found at i:14918273 original size:31 final size:31
Alignment explanation
Indices: 14918230--14918290 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
14918220 TTAAATATAT
*
14918230 AATCATGCAAATAATAATATATAAATCATGC
1 AATCATGCAAATAATAATATATAAACCATGC
*
14918261 AATCATGTAAATAATAATATATAAACCATG
1 AATCATGCAAATAATAATATATAAACCATG
14918291 TGAAATATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (31 bp):
AATCATGCAAATAATAATATATAAACCATGC
Found at i:14918283 original size:55 final size:53
Alignment explanation
Indices: 14918057--14918357 Score: 152
Period size: 55 Copynumber: 5.6 Consensus size: 53
14918047 TAATCATGCA
* *
14918057 AATAA-ATATATAATCATGC-AAT-TAACAATGTAAATCATGCAA--ATAAACAT
1 AATAATATATATAATCATGCAAATATAA-TATATAAATCATGCAATCATAAA-AT
* * * *
14918107 GCAATTAA-ATTTATAAATCATGCAAATA-AATATATAAACCTTACAA--ATAAATAT
1 --AA-TAATATATAT-AATCATGCAAATATAATATATAAATCATGCAATCATAAA-AT
*
14918161 GCAATTAA-ATATATAATCATGCAAATAGTAATATATAAA-CTGTGCAA--ATAAACAT
1 --AA-TAATATATATAATCATGCAAATA-TAATATATAAATC-ATGCAATCATAAA-AT
*
14918216 GCAATTAA-ATATATAATCATGCAAATAATAATATATAAATCATGCAATCATGTAAAT
1 --AA-TAATATATATAATCATGCAAAT-ATAATATATAAATCATGCAATCAT-AAAAT
* * * **
14918273 AATAATATATA-AACCATGTGAAATATGCA-AT-TAAAT-ATATAATCATACAAAT
1 AATAATATATATAATCATG-CAAATAT-AATATATAAATCATGCAATCATA-AAAT
14918325 AATAATATATAAATAATCATGCAAATATAATAT
1 AATAATATAT--ATAATCATGCAAATATAATAT
14918358 TAGTCATGCA
Statistics
Matches: 207, Mismatches: 22, Indels: 38
0.78 0.08 0.14
Matches are distributed among these distances:
52 24 0.12
53 27 0.13
54 62 0.30
55 86 0.42
56 2 0.01
57 4 0.02
58 2 0.01
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (53 bp):
AATAATATATATAATCATGCAAATATAATATATAAATCATGCAATCATAAAAT
Found at i:14918340 original size:14 final size:15
Alignment explanation
Indices: 14918304--14918341 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
14918294 AATATGCAAT
14918304 TAAATATATAATCATA
1 TAAATA-ATAATCATA
*
14918320 CAAATAATAAT-ATA
1 TAAATAATAATCATA
14918334 TAAATAAT
1 TAAATAAT
14918342 CATGCAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 10 0.50
15 5 0.25
16 5 0.25
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (15 bp):
TAAATAATAATCATA
Found at i:14918348 original size:86 final size:83
Alignment explanation
Indices: 14918175--14918338 Score: 242
Period size: 83 Copynumber: 1.9 Consensus size: 83
14918165 TTAAATATAT
* *
14918175 AATCATGCAAATAGTAATATATAAACTGTGCAAATAAACATGCAATTAAATATATAATCATGCAA
1 AATCATGCAAATAATAATATATAAACTGTGCAAAT--A-ATGCAATTAAATATATAATCATACAA
14918240 ATAATAATATATAAATCATGC
63 ATAATAATATATAAATCATGC
*
14918261 AATCATGTAAATAATAATATATAAACCATGTG-AAAT-ATGCAATTAAATATATAATCATACAAA
1 AATCATGCAAATAATAATATATAAA-C-TGTGCAAATAATGCAATTAAATATATAATCATACAAA
14918324 TAATAATATATAAAT
64 TAATAATATATAAAT
14918339 AATCATGCAA
Statistics
Matches: 73, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
83 41 0.56
86 23 0.32
87 5 0.07
88 4 0.05
ACGTcount: A:0.53, C:0.10, G:0.07, T:0.30
Consensus pattern (83 bp):
AATCATGCAAATAATAATATATAAACTGTGCAAATAATGCAATTAAATATATAATCATACAAATA
ATAATATATAAATCATGC
Found at i:14919028 original size:13 final size:12
Alignment explanation
Indices: 14918995--14919034 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
14918985 TTTCAATAAA
14918995 AAACTAAAAATT
1 AAACTAAAAATT
*
14919007 AAACCAAAAATT
1 AAACTAAAAATT
14919019 AAACTAAAAAATT
1 AAACT-AAAAATT
14919032 AAA
1 AAA
14919035 ATACAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (12 bp):
AAACTAAAAATT
Found at i:14919624 original size:21 final size:21
Alignment explanation
Indices: 14919585--14919625 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14919575 ATATATATAA
*
14919585 TTATATTTTTAATTAATTATT
1 TTATATTTATAATTAATTATT
14919606 TTATATTTATATATT-ATTAT
1 TTATATTTATA-ATTAATTAT
14919626 ATTAATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATATTTATAATTAATTATT
Found at i:14919627 original size:16 final size:16
Alignment explanation
Indices: 14919576--14919649 Score: 66
Period size: 16 Copynumber: 4.7 Consensus size: 16
14919566 GCCCTGGGTA
*
14919576 TATATATAATTATATTTT
1 TATAT-TAA-TATATTAT
14919594 TA-ATTAAT-TATT-T
1 TATATTAATATATTAT
*
14919607 TATATTTATATATTAT
1 TATATTAATATATTAT
*
14919623 TATATTAATAAAGTTAT
1 TATATTAATATA-TTAT
14919640 TAT-TTAATAT
1 TATATTAATAT
14919650 CTTAATTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
13 3 0.06
14 9 0.19
15 5 0.10
16 20 0.42
17 9 0.19
18 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (16 bp):
TATATTAATATATTAT
Found at i:14920449 original size:20 final size:22
Alignment explanation
Indices: 14920398--14920449 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
14920388 TTGAATGGAA
14920398 TTTATATTATACTTTTTCTATAT
1 TTTATATT-TACTTTTTCTATAT
* *
14920421 TTCAAATTTA-TTTTTC-ATAT
1 TTTATATTTACTTTTTCTATAT
14920441 TTTATATTT
1 TTTATATTT
14920450 TGGCATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 11 0.44
21 6 0.24
22 2 0.08
23 6 0.24
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTATATTTACTTTTTCTATAT
Found at i:14921182 original size:16 final size:16
Alignment explanation
Indices: 14921161--14921193 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14921151 ATGTTTGTGA
14921161 ACATATATATGATCAC
1 ACATATATATGATCAC
14921177 ACATATATATGATCAC
1 ACATATATATGATCAC
14921193 A
1 A
14921194 AAAATAGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.30
Consensus pattern (16 bp):
ACATATATATGATCAC
Found at i:14922873 original size:57 final size:58
Alignment explanation
Indices: 14922775--14922964 Score: 244
Period size: 59 Copynumber: 3.3 Consensus size: 58
14922765 TTGGATTATC
*
14922775 AAGGAAAATTGATACTTTCAAC-TTTTCTTCAAATATATTTTTTTGAAAATTTTATTTCT
1 AAGGAAAATTGATAC-TTCAACTTTTTC-TCAAAAATATTTTTTTGAAAATTTTATTTCT
* **
14922834 AAGGGAAATTGATA-TTCAACTTTTTCTCAAAAATATTTTTTTGAAGTTTTTATTTCT
1 AAGGAAAATTGATACTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTTATTTCT
* * *
14922891 AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTG-AAATATTTATTT-T
1 AAGGAAAATTGATAC-TTCAACTTTTTCTCAAAAATATTTTTTTGAAAAT-TTTATTTCT
14922949 CAAGGAAAATTGATAC
1 -AAGGAAAATTGATAC
14922965 AAAAAATTGA
Statistics
Matches: 115, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
57 46 0.40
58 8 0.07
59 61 0.53
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.45
Consensus pattern (58 bp):
AAGGAAAATTGATACTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTTATTTCT
Found at i:14922970 original size:72 final size:73
Alignment explanation
Indices: 14922894--14923032 Score: 217
Period size: 72 Copynumber: 1.9 Consensus size: 73
14922884 TATTTCTAAG
* * *
14922894 AAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TCTTTTTGAAATATTTATTTTCAAGGAAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAA
14922958 TTGATACA
66 TTGATACA
* * *
14922966 AAAAATTGATACTTTTAACTTTTCCTCAAAAATACCCTTTTTAAAATTTTTATTTTTAAGAAAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAA
14923031 TT
66 TT
14923033 AATATTTTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
72 33 0.55
73 27 0.45
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (73 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAA
TTGATACA
Found at i:14926268 original size:72 final size:70
Alignment explanation
Indices: 14926115--14926291 Score: 196
Period size: 72 Copynumber: 2.5 Consensus size: 70
14926105 AAAAGTTGTC
* * *
14926115 TTTTTAACAAAAATTACGTTTTTATCTTATAAACGTTATCTTCATTGAATTTTGAAAAATATATT
1 TTTTTAACAAAAATTACGTTTTTATCTTAGAAAC--TATCTTCATTAAATTCTGAAAAATATATT
14926180 TTTCGTA
64 TTTCGTA
* * * *
14926187 TTTTCAACAAAAATTACGTTTTTATCTTAGAAAC-ATCTTCTTTAAATTCTGAAAAATTTTTTTT
1 TTTTTAACAAAAATTACGTTTTTATCTTAGAAACTATCTTCATTAAATTCTGAAAAA--TATATT
14926251 TTTCATGT-
64 TTTC--GTA
* * *
14926259 TTTTTAACAAAGATTGCATTTTTATCTTAGAAA
1 TTTTTAACAAAAATTACGTTTTTATCTTAGAAA
14926292 TATTATATTT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
69 19 0.21
71 8 0.09
72 61 0.68
73 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.49
Consensus pattern (70 bp):
TTTTTAACAAAAATTACGTTTTTATCTTAGAAACTATCTTCATTAAATTCTGAAAAATATATTTT
TCGTA
Found at i:14926437 original size:114 final size:110
Alignment explanation
Indices: 14926185--14926415 Score: 261
Period size: 114 Copynumber: 2.1 Consensus size: 110
14926175 ATATTTTTCG
* * * *
14926185 TATTTTCAACAAAAATTACGTTTTTATCTTAGAAACATCTTCTTTAAATTCTGAAAAATTTTTTT
1 TATTTTCAATAAAAACTA-TTTTTTATCTTAGAAACATCTTCTTTAAATTCT-AAAAATTATTTT
* * * *
14926250 TTTTCATGTTTTTTAACAAAGATTGCATTTTTATCTTAGAAATATTA
64 TTTTCATGTTTTTTAACAAAAACTACATTTTTATCTTAGAAATATCA
* * *
14926297 TATTTTCAATAAAAACTATGTTTTTTTATCTTAGAAACACTATTTTTCTTGAATTCT-AAAATTA
1 TATTTTCAATAAAAACTA---TTTTTTATCTTAGAAACA-T-CTTCT-TTAAATTCTAAAAATTA
*
14926361 TTTTTTTTCATG-TTTTTAACAAAAACTACATTTTTATCTTAGAAATCTCA
60 TTTTTTTTCATGTTTTTTAACAAAAACTACATTTTTATCTTAGAAATATCA
14926411 T-TTTT
1 TATTTT
14926416 GTTGAATTCT
Statistics
Matches: 101, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
112 16 0.16
113 4 0.04
114 51 0.50
115 19 0.19
116 3 0.03
117 8 0.08
ACGTcount: A:0.33, C:0.11, G:0.05, T:0.50
Consensus pattern (110 bp):
TATTTTCAATAAAAACTATTTTTTATCTTAGAAACATCTTCTTTAAATTCTAAAAATTATTTTTT
TTCATGTTTTTTAACAAAAACTACATTTTTATCTTAGAAATATCA
Found at i:14926476 original size:71 final size:73
Alignment explanation
Indices: 14926319--14926477 Score: 261
Period size: 71 Copynumber: 2.2 Consensus size: 73
14926309 AAACTATGTT
* *
14926319 TTTTTATCTTAGAAA-CACTATTTTTCTTGAATTCTAAAATTATTTTTTTTCATGTTTTTAACAA
1 TTTTTATCTTAGAAATCACTATTTTTCTTGAATTCTAAAAATATTTTTTTTCATGTTTTCAACAA
14926383 AAACTACA
66 AAACTACA
* *
14926391 TTTTTATCTTAGAAATCTC-ATTTTTGTTGAATTCTAAAAATA-TTTTTTTCATGTTTTCAACAA
1 TTTTTATCTTAGAAATCACTATTTTTCTTGAATTCTAAAAATATTTTTTTTCATGTTTTCAACAA
14926454 AAACTACA
66 AAACTACA
14926462 TTTTTATCTTAGAAAT
1 TTTTTATCTTAGAAAT
14926478 GTAGTCTTTT
Statistics
Matches: 82, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
71 44 0.54
72 36 0.44
73 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.50
Consensus pattern (73 bp):
TTTTTATCTTAGAAATCACTATTTTTCTTGAATTCTAAAAATATTTTTTTTCATGTTTTCAACAA
AAACTACA
Found at i:14927689 original size:11 final size:11
Alignment explanation
Indices: 14927673--14927712 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
14927663 ATCATTGGCC
14927673 TAAAGTAAATT
1 TAAAGTAAATT
14927684 TAAAGTAAATT
1 TAAAGTAAATT
* *
14927695 ACAAACTAAATT
1 -TAAAGTAAATT
14927707 TAAAGT
1 TAAAGT
14927713 TTAATTCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (11 bp):
TAAAGTAAATT
Found at i:14928027 original size:24 final size:24
Alignment explanation
Indices: 14927997--14928044 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
14927987 TCAAGCTTGG
* *
14927997 GGTTTGAGGTGGTCGACTATTGTT
1 GGTTTGAGATGGCCGACTATTGTT
*
14928021 GGTTTGAGATGGCCGGCTATTGTT
1 GGTTTGAGATGGCCGACTATTGTT
14928045 AGATTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.10, G:0.38, T:0.40
Consensus pattern (24 bp):
GGTTTGAGATGGCCGACTATTGTT
Found at i:14932435 original size:16 final size:17
Alignment explanation
Indices: 14932399--14932441 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
14932389 AATAATAACA
*
14932399 ATCATATAAATATATAAT
1 ATCATACAAATATAT-AT
14932417 ATCATACAAATATAT-T
1 ATCATACAAATATATAT
14932433 ATCATACAA
1 ATCATACAA
14932442 TAATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
ATCATACAAATATATAT
Found at i:14932446 original size:18 final size:17
Alignment explanation
Indices: 14932399--14932448 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
14932389 AATAATAACA
* *
14932399 ATCATATAAATATATAAT
1 ATCATACAAA-ATATATT
14932417 ATCATAC-AAATATATT
1 ATCATACAAAATATATT
14932433 ATCATACAATAATATA
1 ATCATACAA-AATATA
14932449 AAATACCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 13 0.46
17 3 0.11
18 12 0.43
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (17 bp):
ATCATACAAAATATATT
Found at i:14932447 original size:16 final size:17
Alignment explanation
Indices: 14932407--14932447 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
14932397 CAATCATATA
*
14932407 AATATATAATATCATAC
1 AATATATATTATCATAC
14932424 AA-ATATATTATCATAC
1 AATATATATTATCATAC
14932440 AATA-ATAT
1 AATATATAT
14932448 AAAATACCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (17 bp):
AATATATATTATCATAC
Found at i:14932690 original size:54 final size:51
Alignment explanation
Indices: 14932620--14932852 Score: 132
Period size: 54 Copynumber: 4.4 Consensus size: 51
14932610 CATATCATGC
* * * *
14932620 AATAAATATAAAATCATGCAATAATACTAATGAATGAATAAATAA-CTATGAA
1 AATAAATATATAATCATGCAATAACACAAATAAAT-AATAAATAATC-ATGAA
* * * * *
14932672 AATAGATATTAATAATCATACAATCACACAAATAAATAATTAATAATCATGCA
1 AATAAATA-T-ATAATCATGCAATAACACAAATAAATAATAAATAATCATGAA
** * * *
14932725 AATAAATATATAATCATGCAATTAACA-ATGTAAATCATGCAAATAAACATGCA
1 AATAAATATATAATCATGCAA-TAACACAAATAAATAAT--AAATAATCATGAA
* * * * * * *
14932778 ATTAAATTTATAAATCATGCAAATAA-ATATATAAACCTTACAAATAAAT-ATGCA
1 AATAAATATAT-AATCATGC-AATAACACAAATAAA--TAATAAAT-AATCATGAA
*
14932832 ATTAAATATATAATCATGCAA
1 AATAAATATATAATCATGCAA
14932853 ATAGTAATAT
Statistics
Matches: 145, Mismatches: 24, Indels: 24
0.75 0.12 0.12
Matches are distributed among these distances:
51 19 0.13
52 14 0.10
53 49 0.34
54 57 0.39
55 4 0.03
56 2 0.01
ACGTcount: A:0.55, C:0.11, G:0.06, T:0.29
Consensus pattern (51 bp):
AATAAATATATAATCATGCAATAACACAAATAAATAATAAATAATCATGAA
Found at i:14932739 original size:20 final size:20
Alignment explanation
Indices: 14932705--14932930 Score: 81
Period size: 20 Copynumber: 12.1 Consensus size: 20
14932695 TCACACAAAT
*
14932705 AAATAATTA-ATAATCATGC
1 AAATAAATATATAATCATGC
14932724 AAATAAATATATAATCATGC
1 AAATAAATATATAATCATGC
* *
14932744 AATTAACA-ATGTAAATCATGC
1 AAATAA-ATATAT-AATCATGC
14932765 -----AA-ATA-AA-CATGC
1 AAATAAATATATAATCATGC
* *
14932777 AATTAAATTTATAAATCATGC
1 AAATAAATATAT-AATCATGC
14932798 AAATAAATATATAA--A--C
1 AAATAAATATATAATCATGC
**
14932814 -CTTACAA-ATA-AAT-ATGC
1 AAATA-AATATATAATCATGC
*
14932831 AATTAAATATATAATCATGC
1 AAATAAATATATAATCATGC
*
14932851 AAATAGTAATATATAAAC-TG-
1 AAATA--AATATATAATCATGC
*
14932871 ---TGCAA-ATA-AA-CATGC
1 AAAT-AAATATATAATCATGC
*
14932886 AATTAAATATATAATCATGC
1 AAATAAATATATAATCATGC
14932906 AAATAATAATATATAAATCATGC
1 AAAT-A-AATATAT-AATCATGC
14932929 AA
1 AA
14932931 TCATGTAAAT
Statistics
Matches: 158, Mismatches: 15, Indels: 64
0.67 0.06 0.27
Matches are distributed among these distances:
12 5 0.03
13 3 0.02
14 6 0.04
15 12 0.08
16 6 0.04
17 8 0.05
18 13 0.08
19 13 0.08
20 38 0.24
21 27 0.17
22 17 0.11
23 10 0.06
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (20 bp):
AAATAAATATATAATCATGC
Found at i:14932777 original size:33 final size:33
Alignment explanation
Indices: 14932734--14932911 Score: 105
Period size: 33 Copynumber: 5.1 Consensus size: 33
14932724 AAATAAATAT
* *
14932734 ATAATCATGCAATTAACA-ATGTAAATCATGCAA
1 ATAAACATGCAATTAA-ATATATAAATCATGCAA
*
14932767 ATAAACATGCAATTAAATTTATAAATCATGCAA
1 ATAAACATGCAATTAAATATATAAATCATGCAA
* ** **
14932800 ATAAATATATAAACCTTACAA-ATA-AATATGCAATTAAA
1 ATAAACAT-GCAA--TTA-AATATATAA-AT-C-ATGCAA
* *
14932838 TATATAATCATGCAAATAGTAATATATAAA-CTGTGCAA
1 -ATA-AA-CATGCAATTA--AATATATAAATC-ATGCAA
14932876 ATAAACATGCAATTAAATATAT-AATCATGCAA
1 ATAAACATGCAATTAAATATATAAATCATGCAA
14932908 ATAA
1 ATAA
14932912 TAATATATAA
Statistics
Matches: 110, Mismatches: 20, Indels: 31
0.68 0.12 0.19
Matches are distributed among these distances:
32 12 0.11
33 43 0.39
34 2 0.02
35 11 0.10
36 9 0.08
37 6 0.05
38 10 0.09
39 5 0.05
40 8 0.07
41 4 0.04
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (33 bp):
ATAAACATGCAATTAAATATATAAATCATGCAA
Found at i:14932879 original size:55 final size:54
Alignment explanation
Indices: 14932713--14932922 Score: 273
Period size: 55 Copynumber: 3.9 Consensus size: 54
14932703 ATAAATAATT
* * * * * * *
14932713 AATAATCATGCAAATAAATATATAATCATGCAATTAACAATGTA-AATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAACTTGCA
* *
14932766 AATAAACATGCAATTAAATTTATAAATCATGCAAAT-A-AATATATAAACCTTACA
1 AATAAACATGCAATTAAATATAT-AATCATGCAAATAATAATATATAAA-CTTGCA
* *
14932820 AATAAATATGCAATTAAATATATAATCATGCAAATAGTAATATATAAACTGTGCA
1 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAACT-TGCA
14932875 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAA
1 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAA
14932923 TCATGCAATC
Statistics
Matches: 137, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
52 5 0.04
53 35 0.26
54 38 0.28
55 59 0.43
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (54 bp):
AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAACTTGCA
Found at i:14932928 original size:23 final size:22
Alignment explanation
Indices: 14932876--14932930 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
14932866 AACTGTGCAA
*
14932876 ATAAA-CATGC-AATTAAATAT
1 ATAAATCATGCAAATAAAATAT
14932896 AT-AATCATGCAAATAATAATAT
1 ATAAATCATGCAAATAA-AATAT
14932918 ATAAATCATGCAA
1 ATAAATCATGCAA
14932931 TCATGTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.07
20 7 0.23
21 4 0.13
22 7 0.23
23 10 0.33
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (22 bp):
ATAAATCATGCAAATAAAATAT
Found at i:14932951 original size:55 final size:54
Alignment explanation
Indices: 14932725--14933025 Score: 151
Period size: 55 Copynumber: 5.6 Consensus size: 54
14932715 TAATCATGCA
* * *
14932725 AATAA-ATATATAATCATGCAATTAA-CA-ATGTAAATCATGCAA--ATAAACAT
1 AATAATATATATAATCATGCAAATAATAATATATAAATCATGCAATCATAAA-AT
* * * *
14932775 GCAATTAA-ATTTATAAATCATGCAAAT-A-AATATATAAACCTTACAA--ATAAATAT
1 --AA-TAATATATAT-AATCATGCAAATAATAATATATAAATCATGCAATCATAAA-AT
* *
14932829 GCAATTAA-ATATATAATCATGCAAATAGTAATATATAAA-CTGTGCAA--ATAAACAT
1 --AA-TAATATATATAATCATGCAAATAATAATATATAAATC-ATGCAATCATAAA-AT
*
14932884 GCAATTAA-ATATATAATCATGCAAATAATAATATATAAATCATGCAATCATGTAAAT
1 --AA-TAATATATATAATCATGCAAATAATAATATATAAATCATGCAATCAT-AAAAT
* *
14932941 AATAATATATA-AACCATGCGAAATATGTAAT-TA-AATAT-AT--AATCATACAAAT
1 AATAATATATATAATCATGC-AAATA-ATAATATATAA-ATCATGCAATCATA-AAAT
14932993 AATAATATATAAATAATCATGCAAAT-ATAATAT
1 AATAATATAT--ATAATCATGCAAATAATAATAT
14933026 TAGTCATGCA
Statistics
Matches: 209, Mismatches: 21, Indels: 37
0.78 0.08 0.14
Matches are distributed among these distances:
52 26 0.12
53 23 0.11
54 62 0.30
55 87 0.42
56 5 0.02
57 4 0.02
58 2 0.01
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (54 bp):
AATAATATATATAATCATGCAAATAATAATATATAAATCATGCAATCATAAAAT
Found at i:14932959 original size:109 final size:111
Alignment explanation
Indices: 14932762--14932971 Score: 261
Period size: 109 Copynumber: 1.9 Consensus size: 111
14932752 ATGTAAATCA
* *
14932762 TGCAAATAAACATGCAATTAAATTTATAAATCATGCAAATAAATATATAAACCTTACAAATAAAT
1 TGCAAATAAACATGCAATTAAATATATAAATCATGCAAATAAATATATAAACCATACAAATAAAT
* * *
14932827 ATGCAATTAAATATATAATCATGC-AAATA-GTAATATATAAACTG
66 ATGAAATAAAATATATAACCATGCGAAATATGTAATATATAAACTG
* * *
14932871 TGCAAATAAACATGCAATTAAATATAT-AATCATGCAAATAATAATATATAAATCATGC-AAT-C
1 TGCAAATAAACATGCAATTAAATATATAAATCATGCAAAT-A-AATATATAAACCATACAAATAA
*
14932933 ATGT-AAATAATAATATATAAACCATGCGAAATATGTAAT
64 ATATGAAATAA-AATATAT-AACCATGCGAAATATGTAAT
14932972 TAAATATATA
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
107 4 0.05
108 22 0.26
109 37 0.43
110 18 0.21
111 5 0.06
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (111 bp):
TGCAAATAAACATGCAATTAAATATATAAATCATGCAAATAAATATATAAACCATACAAATAAAT
ATGAAATAAAATATATAACCATGCGAAATATGTAATATATAAACTG
Found at i:14932981 original size:32 final size:31
Alignment explanation
Indices: 14932898--14932959 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
14932888 TTAAATATAT
* *
14932898 AATCATGCAAATAATAATATATAAATCATGC
1 AATCATGTAAATAATAATATATAAACCATGC
14932929 AATCATGTAAATAATAATATATAAACCATGC
1 AATCATGTAAATAATAATATATAAACCATGC
14932960 GAAATATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (31 bp):
AATCATGTAAATAATAATATATAAACCATGC
Found at i:14933008 original size:14 final size:15
Alignment explanation
Indices: 14932972--14933009 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
14932962 AATATGTAAT
14932972 TAAATATATAATCATA
1 TAAATA-ATAATCATA
*
14932988 CAAATAATAAT-ATA
1 TAAATAATAATCATA
14933002 TAAATAAT
1 TAAATAAT
14933010 CATGCAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 10 0.50
15 5 0.25
16 5 0.25
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (15 bp):
TAAATAATAATCATA
Found at i:14933696 original size:13 final size:12
Alignment explanation
Indices: 14933663--14933702 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
14933653 TTTCAATAAA
14933663 AAACTAAAAATT
1 AAACTAAAAATT
*
14933675 AAACCAAAAATT
1 AAACTAAAAATT
14933687 AAACTAAAAAATT
1 AAACT-AAAAATT
14933700 AAA
1 AAA
14933703 ATACAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (12 bp):
AAACTAAAAATT
Found at i:14934292 original size:21 final size:21
Alignment explanation
Indices: 14934253--14934293 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14934243 ATATATATAA
*
14934253 TTATATTTTTAATTAATTATT
1 TTATATTTATAATTAATTATT
14934274 TTATATTTATATATT-ATTAT
1 TTATATTTATA-ATTAATTAT
14934294 ATTAATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTATATTTATAATTAATTATT
Found at i:14934295 original size:16 final size:16
Alignment explanation
Indices: 14934244--14934317 Score: 66
Period size: 16 Copynumber: 4.7 Consensus size: 16
14934234 GCCCTGGGTA
*
14934244 TATATATAATTATATTTT
1 TATAT-TAA-TATATTAT
14934262 TA-ATTAAT-TATT-T
1 TATATTAATATATTAT
*
14934275 TATATTTATATATTAT
1 TATATTAATATATTAT
*
14934291 TATATTAATAAAGTTAT
1 TATATTAATATA-TTAT
14934308 TAT-TTAATAT
1 TATATTAATAT
14934318 CTTAATTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
13 3 0.06
14 9 0.19
15 5 0.10
16 20 0.42
17 9 0.19
18 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (16 bp):
TATATTAATATATTAT
Found at i:14935106 original size:20 final size:22
Alignment explanation
Indices: 14935055--14935106 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
14935045 TTGAATGGAA
14935055 TTTATATTATACTTTTTCTATAT
1 TTTATATT-TACTTTTTCTATAT
* *
14935078 TTCAAATTTA-TTTTTC-ATAT
1 TTTATATTTACTTTTTCTATAT
14935098 TTTATATTT
1 TTTATATTT
14935107 TGGCATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 11 0.44
21 6 0.24
22 2 0.08
23 6 0.24
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (22 bp):
TTTATATTTACTTTTTCTATAT
Found at i:14935835 original size:16 final size:16
Alignment explanation
Indices: 14935814--14935846 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14935804 ATGTTTGTGA
14935814 ACATATATATGATCAC
1 ACATATATATGATCAC
14935830 ACATATATATGATCAC
1 ACATATATATGATCAC
14935846 A
1 A
14935847 AAAATAGAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.30
Consensus pattern (16 bp):
ACATATATATGATCAC
Found at i:14937471 original size:59 final size:58
Alignment explanation
Indices: 14937421--14937609 Score: 269
Period size: 59 Copynumber: 3.3 Consensus size: 58
14937411 TTGGATTATC
*
14937421 AAGGAAAATTGATACTTTCAACTTTTCTTCAAATATATTTTTTTGAAAATTTTATTTCT
1 AAGGAAAATTGATACTTTCAACTTTTC-TCAAAAATATTTTTTTGAAAATTTTATTTCT
* **
14937480 AAGGGAAATTGATA--TTCAACTTTTCTCAAAAATATTTTTTTGAAGTTTTTATTTCT
1 AAGGAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTTGAAAATTTTATTTCT
*
14937536 AAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTG-AAATATTTATTT-T
1 AAGGAAAATTGATACTTTCAACTTTT-CTCAAAAATATTTTTTTGAAAAT-TTTATTTCT
14937594 CAAGGAAAATTGATAC
1 -AAGGAAAATTGATAC
14937610 AAAAAATTTA
Statistics
Matches: 117, Mismatches: 8, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
56 41 0.35
57 11 0.09
58 13 0.11
59 52 0.44
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (58 bp):
AAGGAAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTTGAAAATTTTATTTCT
Found at i:14937616 original size:72 final size:73
Alignment explanation
Indices: 14937540--14937681 Score: 214
Period size: 72 Copynumber: 2.0 Consensus size: 73
14937530 ATTTCTAAGG
* * *
14937540 AAAATTGATACTTTCAACTTTTCCTCAAAAATA-TCTTTTTGAAATATTTATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAAT
14937604 TGATACAA
66 TGATACAA
* * * *
14937612 AAAATTTATACTTTTAACTTTTCCTCAAAAATACCCTTTTTAAAATTTTTATTTTTAAGAAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAAT
14937677 TGATA
66 TGATA
14937682 TTTTTATTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 31 0.50
73 31 0.50
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.43
Consensus pattern (73 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATACCCTTTTTAAAATATTTATTTTCAAGAAAAAT
TGATACAA
Found at i:14940700 original size:37 final size:37
Alignment explanation
Indices: 14940631--14940703 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
14940621 CTCAAAACAA
* * * *
14940631 ATTTTATATATAATAATATTAGGTAAATATATTTTAG
1 ATTTCATATATAATAATATTAAGCAAAGATATTTTAG
*
14940668 ATTTCATATGTAATAATATTAAGCAAAGATATTTTA
1 ATTTCATATATAATAATATTAAGCAAAGATATTTTA
14940704 CTTTTTATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (37 bp):
ATTTCATATATAATAATATTAAGCAAAGATATTTTAG
Found at i:14940844 original size:72 final size:69
Alignment explanation
Indices: 14940768--14940937 Score: 198
Period size: 72 Copynumber: 2.4 Consensus size: 69
14940758 TGTCTTTTTG
* * *
14940768 ACAAAAATTACGTTTTTATCTTATAAACGTTATCTTCATTGAATTTTGAAAAATATATTTTTTGT
1 ACAAAAATTACGTTTTTATCTTAGAAAC---ATCTTCATTAAATTCTGAAAAATATATTTTTTGT
14940833 ATTTTCA
63 ATTTTCA
* *
14940840 ACAAAAATTACGTTTTTATCTTAGAAACATCTTCTTTAAATTCTGAAAAATATTTTTTTTCATGT
1 ACAAAAATTACGTTTTTATCTTAGAAACATCTTCATTAAATTCTGAAAAATA-TATTTTT--TGT
*
14940905 -TTTTTA
63 ATTTTCA
* * *
14940911 ACAAAGATTGCATTTTTATCTTAGAAA
1 ACAAAAATTACGTTTTTATCTTAGAAA
14940938 TATTATATTT
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
69 21 0.24
70 6 0.07
71 29 0.34
72 30 0.35
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (69 bp):
ACAAAAATTACGTTTTTATCTTAGAAACATCTTCATTAAATTCTGAAAAATATATTTTTTGTATT
TTCA
Found at i:14941030 original size:185 final size:183
Alignment explanation
Indices: 14940780--14941153 Score: 438
Period size: 185 Copynumber: 2.0 Consensus size: 183
14940770 AAAAATTACG
* ** *
14940780 TTTTTATCTTATAAACGTTATCTTCATTGAATTTTGAAAAATATATTTTTTGTATTTTCAACAAA
1 TTTTTATCTTAGAAACACTATCTTCATTGAATTCTGAAAAATATATTTTTTGTATTTTCAACAAA
* * *
14940845 AATTACGTTTTTATCTTAGAAA-CATCTTCT-TTAAATTCTGAAAAATATTTTTTTTCATGTTTT
66 AACTACATTTTTATCTTAGAAATCATCTT-TGTTAAATTCT-AAAAA-ATATTTTTTCATG-TTT
* * * * * *
14940908 TTAACAAAGATTGCATTTTTATCTTAGAAATATTA-TATTTTCA-ATAAAAACTATGTT
127 TCAACAAAAACTACATTTTTATCTTAGAAAT-GTAGTATTTTCATA-AAAAACTATATT
* * *
14940965 TTTTTATCTTAGAAACACTATTTTTC-TTGAATTCT-AAAAAT-TATTTTTTTTCATGTTTTAAC
1 TTTTTATCTTAGAAACACTA-TCTTCATTGAATTCTGAAAAATATATTTTTTGT-AT-TTTCAAC
*
14941027 AAAAACTACATTTTTATCTTAGAAATCTCATCTTTGTTGAATTCTAAAAAATATTTTTTCATGTT
63 AAAAACTACATTTTTATCTTAGAAA--TCATCTTTGTTAAATTCTAAAAAATATTTTTTCATGTT
*
14941092 TTCAACAAAAACTACATTTTTATCTTAGAAATGTAGTCTTTTCATAAAAAACTATATT
126 TTCAACAAAAACTACATTTTTATCTTAGAAATGTAGTATTTTCATAAAAAACTATATT
14941150 TTTT
1 TTTT
14941154 ATGTTAAAAA
Statistics
Matches: 162, Mismatches: 18, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
183 9 0.06
184 10 0.06
185 106 0.65
186 17 0.10
187 6 0.04
188 14 0.09
ACGTcount: A:0.34, C:0.11, G:0.06, T:0.49
Consensus pattern (183 bp):
TTTTTATCTTAGAAACACTATCTTCATTGAATTCTGAAAAATATATTTTTTGTATTTTCAACAAA
AACTACATTTTTATCTTAGAAATCATCTTTGTTAAATTCTAAAAAATATTTTTTCATGTTTTCAA
CAAAAACTACATTTTTATCTTAGAAATGTAGTATTTTCATAAAAAACTATATT
Found at i:14941123 original size:71 final size:72
Alignment explanation
Indices: 14940965--14941123 Score: 243
Period size: 72 Copynumber: 2.2 Consensus size: 72
14940955 AAACTATGTT
* *
14940965 TTTTTATCTTAGAAA-CACTATTTTTCTTGAATTCTAAAAATTATTTTTTTTCATGTTTTAACAA
1 TTTTTATCTTAGAAATCACTATCTTTCTTGAATTCTAAAAA-TATATTTTTTCATGTTTTAACAA
14941029 AAACTACA
65 AAACTACA
* *
14941037 TTTTTATCTTAGAAATCTC-ATCTTTGTTGAATTCTAAAAA-ATATTTTTTCATGTTTTCAACAA
1 TTTTTATCTTAGAAATCACTATCTTTCTTGAATTCTAAAAATATATTTTTTCATGTTTT-AACAA
14941100 AAACTACA
65 AAACTACA
14941108 TTTTTATCTTAGAAAT
1 TTTTTATCTTAGAAAT
14941124 GTAGTCTTTT
Statistics
Matches: 81, Mismatches: 4, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
70 16 0.20
71 29 0.36
72 34 0.42
73 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.05, T:0.48
Consensus pattern (72 bp):
TTTTTATCTTAGAAATCACTATCTTTCTTGAATTCTAAAAATATATTTTTTCATGTTTTAACAAA
AACTACA
Found at i:14941132 original size:71 final size:70
Alignment explanation
Indices: 14940965--14941132 Score: 239
Period size: 71 Copynumber: 2.3 Consensus size: 70
14940955 AAACTATGTT
* * *
14940965 TTTTTATCTTAGAAACACTATTTTTCTTGAATTCTAAAAATTATTTTTTTTCATGTTTTAACAAA
1 TTTTTATCTTAGAAA-TCTATCTTTCTTGAATTCTAAAAA-TATATTTTTTCATGTTTTAACAAA
14941030 AACTACA
64 AACTACA
*
14941037 TTTTTATCTTAGAAATCTCATCTTTGTTGAATTCTAAAAA-ATATTTTTTCATGTTTTCAACAAA
1 TTTTTATCTTAGAAATCT-ATCTTTCTTGAATTCTAAAAATATATTTTTTCATGTTTT-AACAAA
14941101 AACTACA
64 AACTACA
*
14941108 TTTTTATCTTAGAAATGTAGTCTTT
1 TTTTTATCTTAGAAATCTA-TCTTT
14941133 TCATAAAAAA
Statistics
Matches: 88, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
70 17 0.19
71 37 0.42
72 34 0.39
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (70 bp):
TTTTTATCTTAGAAATCTATCTTTCTTGAATTCTAAAAATATATTTTTTCATGTTTTAACAAAAA
CTACA
Found at i:14941662 original size:5 final size:5
Alignment explanation
Indices: 14941654--14941679 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14941644 AAATGAAATT
14941654 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
14941680 ACAAGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:14942323 original size:11 final size:11
Alignment explanation
Indices: 14942307--14942346 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
14942297 TCAATTGGCC
14942307 TAAAGTAAATT
1 TAAAGTAAATT
14942318 TAAAGTAAATT
1 TAAAGTAAATT
* *
14942329 ACAAACTAAATT
1 -TAAAGTAAATT
14942341 TAAAGT
1 TAAAGT
14942347 TTAATTCAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (11 bp):
TAAAGTAAATT
Found at i:14942663 original size:24 final size:24
Alignment explanation
Indices: 14942633--14942680 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
14942623 TCAAGCTTGG
* *
14942633 GGTTTGAGGTGGTCGACTATTGTT
1 GGTTTGAGATGGCCGACTATTGTT
*
14942657 GGTTTGAGATGGCCGGCTATTGTT
1 GGTTTGAGATGGCCGACTATTGTT
14942681 AGATTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.12, C:0.10, G:0.38, T:0.40
Consensus pattern (24 bp):
GGTTTGAGATGGCCGACTATTGTT
Found at i:14943090 original size:19 final size:19
Alignment explanation
Indices: 14943044--14943090 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
14943034 CTTTGAAAAG
* *
14943044 TTATTTTTTGGGTAATTTT
1 TTATTTTTTGGATAATTAT
*
14943063 TTAATTTTT-GATAAGTTAT
1 TTATTTTTTGGATAA-TTAT
14943082 TTATTTTTT
1 TTATTTTTT
14943091 TGTACGTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.11, T:0.68
Consensus pattern (19 bp):
TTATTTTTTGGATAATTAT
Found at i:14947141 original size:24 final size:24
Alignment explanation
Indices: 14947067--14947131 Score: 103
Period size: 24 Copynumber: 2.7 Consensus size: 24
14947057 AAATATTATT
*
14947067 AAATATGAAATACAAAAAAATACA
1 AAATATGAAATACAAAAAACTACA
*
14947091 AAATATGACATACAAAAAACTACA
1 AAATATGAAATACAAAAAACTACA
*
14947115 AAATATAAAATACAAAA
1 AAATATGAAATACAAAA
14947132 TACCAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.69, C:0.11, G:0.03, T:0.17
Consensus pattern (24 bp):
AAATATGAAATACAAAAAACTACA
Found at i:14948148 original size:24 final size:23
Alignment explanation
Indices: 14948104--14948150 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
14948094 TTTTTTTGAC
* *
14948104 TTTTTTAAAATTTTTATATATTA
1 TTTTTTAAAATTTATACATATTA
*
14948127 TTTTATTAAAATTTATGCATATTA
1 TTTT-TTAAAATTTATACATATTA
14948151 AAATACTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TTTTTTAAAATTTATACATATTA
Found at i:14948494 original size:18 final size:18
Alignment explanation
Indices: 14948451--14948497 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
14948441 TCTTTTTTTT
*
14948451 TAAGTAATAAATAAATAT
1 TAAGTAATAAATAAATAA
* *
14948469 TGATTAATAAATTAAA-AA
1 TAAGTAATAAA-TAAATAA
14948487 TAAGTAATAAA
1 TAAGTAATAAA
14948498 AATGAGAAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
TAAGTAATAAATAAATAA
Found at i:14949367 original size:16 final size:17
Alignment explanation
Indices: 14949331--14949373 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
14949321 TACGACAACA
*
14949331 ATCATATAAATATATAAT
1 ATCATACAAATATAT-AT
14949349 ATCATACAAATATAT-T
1 ATCATACAAATATATAT
14949365 ATCATACAA
1 ATCATACAA
14949374 TAATATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
ATCATACAAATATATAT
Found at i:14949380 original size:18 final size:16
Alignment explanation
Indices: 14949342--14949373 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14949332 TCATATAAAT
14949342 ATATAATATCATACAA
1 ATATAATATCATACAA
*
14949358 ATATATTATCATACAA
1 ATATAATATCATACAA
14949374 TAATATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAATATCATACAA
Found at i:14949672 original size:21 final size:22
Alignment explanation
Indices: 14949646--14949699 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
14949636 TAAATAATTA
*
14949646 ATAATCATGTAATTAA-AATAT
1 ATAATCATGCAATTAACAATAT
*
14949667 ATAATCATGCAATTAACAATGT
1 ATAATCATGCAATTAACAATAT
14949689 A-AATCATGCAA
1 ATAATCATGCAA
14949700 ATAAACATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.31
Consensus pattern (22 bp):
ATAATCATGCAATTAACAATAT
Found at i:14949709 original size:33 final size:33
Alignment explanation
Indices: 14949667--14949737 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
14949657 ATTAAAATAT
* *
14949667 ATAATCATGCAATTAACA-ATGTAAATCATGCAA
1 ATAAACATGCAATTAA-ATATATAAATCATGCAA
*
14949700 ATAAACATGCAATTAAATTTATAAATCATGCAA
1 ATAAACATGCAATTAAATATATAAATCATGCAA
14949733 ATAAA
1 ATAAA
14949738 TATATAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 1 0.03
33 33 0.97
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.28
Consensus pattern (33 bp):
ATAAACATGCAATTAAATATATAAATCATGCAA
Found at i:14949730 original size:21 final size:20
Alignment explanation
Indices: 14949700--14949814 Score: 80
Period size: 21 Copynumber: 5.8 Consensus size: 20
14949690 AATCATGCAA
* *
14949700 ATAAACATGCAATTAAATTT
1 ATAAACATGCAAATAAATAT
14949720 ATAAATCATGCAAATAAATAT
1 ATAAA-CATGCAAATAAATAT
* *
14949741 ATAAA-A--C-CATACA-A-
1 ATAAACATGCAAATAAATAT
** *
14949755 ATAAATGTGCAATTAAATAT
1 ATAAACATGCAAATAAATAT
*
14949775 ATAATCATGCAAATAGTAATAT
1 ATAAACATGCAAATA--AATAT
14949797 ATAAACTATGCAAATAAA
1 ATAAAC-ATGCAAATAAA
14949815 CATGCAATTA
Statistics
Matches: 72, Mismatches: 13, Indels: 19
0.69 0.12 0.18
Matches are distributed among these distances:
14 5 0.07
15 1 0.01
16 4 0.06
17 2 0.03
18 3 0.04
19 2 0.03
20 16 0.22
21 20 0.28
22 10 0.14
23 9 0.12
ACGTcount: A:0.55, C:0.10, G:0.06, T:0.29
Consensus pattern (20 bp):
ATAAACATGCAAATAAATAT
Done.