Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 105 of 120
Found at i:14949785 original size:20 final size:20
Alignment explanation
Indices: 14949762--14949865 Score: 71
Period size: 22 Copynumber: 5.3 Consensus size: 20
14949752 CAAATAAATG
14949762 TGCAATTAAATATATAATCA
1 TGCAATTAAATATATAATCA
* *
14949782 TGCAAATAGTAATATATAAACTA
1 TGCAATTA--AATATATAATC-A
14949805 TGC-----AA-ATA-AA-CA
1 TGCAATTAAATATATAATCA
14949817 TGCAATTAAATATATAATCA
1 TGCAATTAAATATATAATCA
*
14949837 TGCAAATAATAATATATAAATCA
1 TGC-AATTA-AATATAT-AATCA
14949860 TGCAAT
1 TGCAAT
14949866 CATGTAAATA
Statistics
Matches: 67, Mismatches: 3, Indels: 26
0.70 0.03 0.27
Matches are distributed among these distances:
12 4 0.06
13 1 0.01
14 2 0.03
15 3 0.04
16 2 0.03
17 2 0.03
18 3 0.04
19 2 0.03
20 12 0.18
21 4 0.06
22 20 0.30
23 12 0.18
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TGCAATTAAATATATAATCA
Found at i:14949816 original size:110 final size:110
Alignment explanation
Indices: 14949656--14949856 Score: 300
Period size: 110 Copynumber: 1.8 Consensus size: 110
14949646 ATAATCATGT
* * * *
14949656 AATTAAAATATATAATCATGCAATTAACAATGTAAATCATGCAAATAAACATGCAATTAAATTTA
1 AATTAAAATATATAATCATGCAAATAACAATATAAAACATGCAAATAAACATGCAATTAAATATA
14949721 TAAATCATGCAAAT-A-AATATATAAAACCATACAAATAAATGTGC
66 T-AATCATGCAAATAATAATATATAAAACCATACAAATAAATGTGC
**
14949765 AATT-AAATATATAATCATGCAAATAGTAATATATAAACTATGCAAATAAACATGCAATTAAATA
1 AATTAAAATATATAATCATGCAAATAACAATATA-AAAC-ATGCAAATAAACATGCAATTAAATA
14949829 TATAATCATGCAAATAATAATATATAAA
64 TATAATCATGCAAATAATAATATATAAA
14949857 TCATGCAATC
Statistics
Matches: 82, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
108 25 0.30
109 19 0.23
110 28 0.34
111 10 0.12
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.29
Consensus pattern (110 bp):
AATTAAAATATATAATCATGCAAATAACAATATAAAACATGCAAATAAACATGCAATTAAATATA
TAATCATGCAAATAATAATATATAAAACCATACAAATAAATGTGC
Found at i:14949820 original size:35 final size:32
Alignment explanation
Indices: 14949775--14949845 Score: 88
Period size: 35 Copynumber: 2.1 Consensus size: 32
14949765 AATTAAATAT
*
14949775 ATAATCATGCAAATAGTAATATATAAACTATGCAA
1 ATAAACATGCAAATA--AATATATAAAC-ATGCAA
* *
14949810 ATAAACATGCAATTAAATATATAATCATGCAA
1 ATAAACATGCAAATAAATATATAAACATGCAA
14949842 ATAA
1 ATAA
14949846 TAATATATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 10 0.30
33 10 0.30
35 13 0.39
ACGTcount: A:0.54, C:0.11, G:0.07, T:0.28
Consensus pattern (32 bp):
ATAAACATGCAAATAAATATATAAACATGCAA
Found at i:14949862 original size:23 final size:22
Alignment explanation
Indices: 14949810--14949864 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
14949800 AACTATGCAA
*
14949810 ATAAA-CATGC-AATTAAATAT
1 ATAAATCATGCAAATAAAATAT
14949830 AT-AATCATGCAAATAATAATAT
1 ATAAATCATGCAAATAA-AATAT
14949852 ATAAATCATGCAA
1 ATAAATCATGCAA
14949865 TCATGTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 2 0.07
20 7 0.23
21 4 0.13
22 7 0.23
23 10 0.33
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (22 bp):
ATAAATCATGCAAATAAAATAT
Found at i:14949863 original size:55 final size:54
Alignment explanation
Indices: 14949645--14949864 Score: 266
Period size: 55 Copynumber: 4.0 Consensus size: 54
14949635 ATAAATAATT
* * * * *
14949645 AATAATCATGTAATTAAAATATATAATCATGCAATTAACA-ATGTAAATCATGCA
1 AATAAACATGCAATT-AAATATATAATCATGCAAATAAAATATATAAATCATGCA
* * *
14949699 AATAAACATGCAATTAAATTTATAAATCATGCAAAT-AAATATATAAAACCATACA
1 AATAAACATGCAATTAAATATAT-AATCATGCAAATAAAATATAT-AAATCATGCA
** *
14949754 AATAAATGTGCAATTAAATATATAATCATGCAAATAGTAATATATAAA-CTATGCA
1 AATAAACATGCAATTAAATATATAATCATGCAAATA-AAATATATAAATC-ATGCA
14949809 AATAAACATGCAATTAAATATATAATCATGCAAATAATAATATATAAATCATGCA
1 AATAAACATGCAATTAAATATATAATCATGCAAATAA-AATATATAAATCATGCA
14949864 A
1 A
14949865 TCATGTAAAT
Statistics
Matches: 142, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
53 9 0.06
54 40 0.28
55 85 0.60
56 8 0.06
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.30
Consensus pattern (54 bp):
AATAAACATGCAATTAAATATATAATCATGCAAATAAAATATATAAATCATGCA
Found at i:14949885 original size:55 final size:54
Alignment explanation
Indices: 14949771--14949959 Score: 157
Period size: 55 Copynumber: 3.5 Consensus size: 54
14949761 GTGCAATTAA
*
14949771 ATATATAATCATGCAAATAGTAATATATAAA-CTATGCAA--ATAAACATGCAATTAA-
1 ATATATAATCATGCAAATAATAATATATAAATC-ATGCAATCATAAA-AT--AA-TAAT
*
14949826 ATATATAATCATGCAAATAATAATATATAAATCATGCAATCATGTAAATAATAAT
1 ATATATAATCATGCAAATAATAATATATAAATCATGCAATCAT-AAAATAATAAT
* *
14949881 ATATA-AACCATGCGAAATATGTAAT-TA-AATAT-AT--AATCATACAAATAATAAT
1 ATATATAATCATGC-AAATA-ATAATATATAA-ATCATGCAATCATA-AAATAATAAT
14949933 ATATAAATAATCATGCAAAT-ATAATAT
1 ATAT--ATAATCATGCAAATAATAATAT
14949960 TAGTCATGCA
Statistics
Matches: 114, Mismatches: 7, Indels: 28
0.77 0.05 0.19
Matches are distributed among these distances:
52 24 0.21
53 1 0.01
54 19 0.17
55 59 0.52
56 5 0.04
57 4 0.04
58 2 0.02
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (54 bp):
ATATATAATCATGCAAATAATAATATATAAATCATGCAATCATAAAATAATAAT
Found at i:14949885 original size:110 final size:105
Alignment explanation
Indices: 14949648--14949909 Score: 280
Period size: 110 Copynumber: 2.4 Consensus size: 105
14949638 AATAATTAAT
* ** * *
14949648 AATCATGTAATTAAAATATATAATCATGCAATTAACAATGTAAATCATGCAAATAAACATGCAAT
1 AATCATGTAATT-AAATATATAATCATGCAAATAGTAATATAAAACATGCAAATAAACATGCAAT
*
14949713 TAAATTTATAAATCATGCAAATAAATATATAAAACCATACA
65 TAAATATATAAATCATGCAAATAAATATATAAAACCATACA
*
14949754 AATAAATGTGCAATTAAATATATAATCATGCAAATAGTAATATATAAACTATGCAAATAAACATG
1 AAT-CATGT--AATTAAATATATAATCATGCAAATAGTAATATA-AAAC-ATGCAAATAAACATG
* *
14949819 CAATTAAATATAT-AATCATGCAAAT-AATAATATATAAATCATGC-
61 CAATTAAATATATAAATCATGCAAATAAAT-ATATA-AAACCATACA
* *
14949863 AATCATGTAAATAATAATATATAAACCATGCGAAATATGTAAT-TAAA
1 AATCATGT-AATTA-AATATAT-AATCATGC-AAATA-GTAATATAAA
14949910 TATATAATCA
Statistics
Matches: 132, Mismatches: 13, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
106 3 0.02
107 8 0.06
108 39 0.30
109 36 0.27
110 41 0.31
111 5 0.04
ACGTcount: A:0.53, C:0.11, G:0.07, T:0.30
Consensus pattern (105 bp):
AATCATGTAATTAAATATATAATCATGCAAATAGTAATATAAAACATGCAAATAAACATGCAATT
AAATATATAAATCATGCAAATAAATATATAAAACCATACA
Found at i:14949915 original size:32 final size:31
Alignment explanation
Indices: 14949832--14949893 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
14949822 TTAAATATAT
* *
14949832 AATCATGCAAATAATAATATATAAATCATGC
1 AATCATGTAAATAATAATATATAAACCATGC
14949863 AATCATGTAAATAATAATATATAAACCATGC
1 AATCATGTAAATAATAATATATAAACCATGC
14949894 GAAATATGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (31 bp):
AATCATGTAAATAATAATATATAAACCATGC
Found at i:14949942 original size:14 final size:15
Alignment explanation
Indices: 14949906--14949943 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
14949896 AATATGTAAT
14949906 TAAATATATAATCATA
1 TAAATA-ATAATCATA
*
14949922 CAAATAATAAT-ATA
1 TAAATAATAATCATA
14949936 TAAATAAT
1 TAAATAAT
14949944 CATGCAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 10 0.50
15 5 0.25
16 5 0.25
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (15 bp):
TAAATAATAATCATA
Found at i:14949950 original size:86 final size:83
Alignment explanation
Indices: 14949777--14949940 Score: 240
Period size: 83 Copynumber: 1.9 Consensus size: 83
14949767 TTAAATATAT
* * *
14949777 AATCATGCAAATAGTAATATATAAACTATGCAAATAAACATGCAATTAAATATATAATCATGCAA
1 AATCATGCAAATAATAATATATAAACCATGCAAAT--A-ATGCAATTAAATATATAATCATACAA
14949842 ATAATAATATATAAATCATGC
63 ATAATAATATATAAATCATGC
* *
14949863 AATCATGTAAATAATAATATATAAACCATGCGAAAT-ATGTAATTAAATATATAATCATACAAAT
1 AATCATGCAAATAATAATATATAAACCATGC-AAATAATGCAATTAAATATATAATCATACAAAT
14949927 AATAATATATAAAT
65 AATAATATATAAAT
14949941 AATCATGCAA
Statistics
Matches: 72, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
83 40 0.56
86 28 0.39
87 4 0.06
ACGTcount: A:0.54, C:0.10, G:0.06, T:0.30
Consensus pattern (83 bp):
AATCATGCAAATAATAATATATAAACCATGCAAATAATGCAATTAAATATATAATCATACAAATA
ATAATATATAAATCATGC
Found at i:14951221 original size:16 final size:16
Alignment explanation
Indices: 14951198--14951244 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
14951188 TTATTTTTTT
*
14951198 CATT-TTATATTTATA
1 CATTATTATATTAATA
14951213 CATTATTATATTAATA
1 CATTATTATATTAATA
*
14951229 AAGTTATTAT-TTAATA
1 CA-TTATTATATTAATA
14951245 TCTTAATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 4 0.14
16 17 0.61
17 7 0.25
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (16 bp):
CATTATTATATTAATA
Found at i:14953100 original size:314 final size:314
Alignment explanation
Indices: 14952531--14953162 Score: 1237
Period size: 314 Copynumber: 2.0 Consensus size: 314
14952521 CTTTTTTTTT
14952531 ACAATTAAATTAAGATCTTATTGATTTTAAAAAATATTTAAAATAAAATATATTTATAGGTTTTT
1 ACAATTAAATTAAGATCTTATTGATTTTAAAAAATATTTAAAATAAAATATATTTATAGGTTTTT
14952596 TTTATTACCAATAAAACAATTTCATGACATCCGAATTCTAAAAAAAGCAATGTATCAAGTGGACT
66 TTTATTACCAATAAAACAATTTCATGACATCCGAATTCTAAAAAAAGCAATGTATCAAGTGGACT
14952661 TTAATCTTAATATCACTGTCACATCTCTAGGAATAATTAACTTTTTTTTTCTTTTTTTTATTATC
131 TTAATCTTAATATCACTGTCACATCTCTAGGAATAATTAACTTTTTTTTTCTTTTTTTTATTATC
*
14952726 TCCAATCAATCGTCCTCGTCTTGTCTAAATCGACCAAATTTGGAATCACAGGCTATAGGACAACT
196 TCCAATCAATCGTCCTCGTCTTGTCTAAATCGACCAAATTTAGAATCACAGGCTATAGGACAACT
*
14952791 TGAAGACTTTTTTTCTTTTGTTTGTCTTTCCTCCCATCACTATTAGCTCATCCG
261 TGAAGACTTTTTTTCTTTTGTTTGTCTTTCCTCCCATCACTATTACCTCATCCG
14952845 ACAATTAAATTAAGATCTTATTGATTTTAAAAAATATTTAAAATAAAATATATTTATAGGTTTTT
1 ACAATTAAATTAAGATCTTATTGATTTTAAAAAATATTTAAAATAAAATATATTTATAGGTTTTT
*
14952910 TTTATTACCAATAAACCAATTTCATGACATCCGAATTCTAAAAAAAGCAATGTATCAAGTGGACT
66 TTTATTACCAATAAAACAATTTCATGACATCCGAATTCTAAAAAAAGCAATGTATCAAGTGGACT
14952975 TTAATCTTAATATCACTGTCACATCTCTAGGAATAATTAACTTTTTTTTTCTTTTTTTTATTATC
131 TTAATCTTAATATCACTGTCACATCTCTAGGAATAATTAACTTTTTTTTTCTTTTTTTTATTATC
14953040 TCCAATCAATCGTCCTCGTCTTGTCTAAATCGACCAAATTTAGAATCACAGGCTATAGGACAACT
196 TCCAATCAATCGTCCTCGTCTTGTCTAAATCGACCAAATTTAGAATCACAGGCTATAGGACAACT
14953105 TGAAGACTTTTTTTCTTTTGTTTGTCTTTCCTCCCATCACTATTACCTCATCCG
261 TGAAGACTTTTTTTCTTTTGTTTGTCTTTCCTCCCATCACTATTACCTCATCCG
14953159 ACAA
1 ACAA
14953163 ATTGTTGTGC
Statistics
Matches: 315, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
314 315 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (314 bp):
ACAATTAAATTAAGATCTTATTGATTTTAAAAAATATTTAAAATAAAATATATTTATAGGTTTTT
TTTATTACCAATAAAACAATTTCATGACATCCGAATTCTAAAAAAAGCAATGTATCAAGTGGACT
TTAATCTTAATATCACTGTCACATCTCTAGGAATAATTAACTTTTTTTTTCTTTTTTTTATTATC
TCCAATCAATCGTCCTCGTCTTGTCTAAATCGACCAAATTTAGAATCACAGGCTATAGGACAACT
TGAAGACTTTTTTTCTTTTGTTTGTCTTTCCTCCCATCACTATTACCTCATCCG
Found at i:14954283 original size:2 final size:2
Alignment explanation
Indices: 14954276--14954302 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14954266 TTTCAATAGT
14954276 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14954303 TATTAAGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14955976 original size:19 final size:21
Alignment explanation
Indices: 14955952--14955995 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 21
14955942 TTTTAATATA
*
14955952 AAAATATAAAA-A-TATTTTT
1 AAAATATAAAATACTATTTAT
14955971 AAAATATAAAATACTATTTAT
1 AAAATATAAAATACTATTTAT
14955992 AAAA
1 AAAA
14955996 GAAACTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 11 0.50
20 1 0.05
21 10 0.45
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAATATAAAATACTATTTAT
Found at i:14956691 original size:20 final size:19
Alignment explanation
Indices: 14956641--14956692 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
14956631 AAATATTTAG
*
14956641 ATAATTATTTAATTTAAAA
1 ATAAATATTTAATTTAAAA
*
14956660 TTAAATATTTTAATTTATACAA
1 ATAAATA-TTTAATTTA-A-AA
14956682 ATAAA-ATTTAA
1 ATAAATATTTAA
14956693 ATACTATCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
19 5 0.19
20 14 0.52
21 2 0.07
22 6 0.22
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAAATATTTAATTTAAAA
Found at i:14961894 original size:18 final size:18
Alignment explanation
Indices: 14961873--14961910 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
14961863 TCAAGAATGC
*
14961873 TTCTATCATCATTACTAT
1 TTCTATCACCATTACTAT
14961891 TTCTATCACCATTACTAT
1 TTCTATCACCATTACTAT
14961909 TT
1 TT
14961911 GTATAAAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (18 bp):
TTCTATCACCATTACTAT
Found at i:14962195 original size:347 final size:347
Alignment explanation
Indices: 14961560--14962236 Score: 1219
Period size: 347 Copynumber: 2.0 Consensus size: 347
14961550 CAAATACTAA
* * *
14961560 ATTTGTATAAAGTAAGTATGATCTTTTCTTTTATTGCTATTTTTATCACTTGCATTTTTAACTTG
1 ATTTGTATAAAGTAAGTATGATCTTTTCCTTTATTGCTATTTCTATCACTTGCATTTTTAACTTA
*
14961625 TACCCCAACTACATCTTCATTTTCTACTATTGCTGTCTTAACTATATCTTTATTTCCTATCCCTT
66 TACCCCAACTACATCTTCATTTTCTACTATTGCTGTCTCAACTATATCTTTATTTCCTATCCCTT
14961690 CATTCCTTATTGTCTCAGTTACATCTTGATTTTCTACCCCTTCATTCCCTATTACTTTAGCTACA
131 CATTCCTTATTGTCTCAGTTACATCTTGATTTTCTACCCCTTCATTCCCTATTACTTTAGCTACA
*
14961755 TTTTTCACTTCTTGTCCTGTTAAGAGCTCAAAAGCTAAAATAACTTCATCTACGCCATATACTAT
196 TTTTTCACTTCTTGTCCTGTTAAGAGCTCAAAAGCTAAAACAACTTCATCTACGCCATATACTAT
*
14961820 ATACACATCAACTATACCATGATATATCATATATCTAATCATATCAAGAATGCTTCTATCATCAT
261 ATACACATCAACTATACCATAATATATCATATATCTAATCATATCAAGAATGCTTCTATCATCAT
14961885 TACTATTTCTATCACCATTACT
326 TACTATTTCTATCACCATTACT
*
14961907 ATTTGTATAAAGTAAGTATGATTTTTTCCTTTATTGCTATTTCTATCACTTGCATTTTTAACTTA
1 ATTTGTATAAAGTAAGTATGATCTTTTCCTTTATTGCTATTTCTATCACTTGCATTTTTAACTTA
* *
14961972 TACCCCAACTACATCTTCATTTTCTATTATTGCTGTCTCAACTATATCTTTATTTTCTATCCCTT
66 TACCCCAACTACATCTTCATTTTCTACTATTGCTGTCTCAACTATATCTTTATTTCCTATCCCTT
*
14962037 CATTCCTTATTGTCTCAGTTACATCTTGATTTTCTACCCCTTCATTCCCTATTACTTTAGCTATA
131 CATTCCTTATTGTCTCAGTTACATCTTGATTTTCTACCCCTTCATTCCCTATTACTTTAGCTACA
* * *
14962102 TTTTTCACTTCTTGTCCTGTTAAGAGCTCAAGAGCTAAAACAACTTCATCTATGCCATGTACTAT
196 TTTTTCACTTCTTGTCCTGTTAAGAGCTCAAAAGCTAAAACAACTTCATCTACGCCATATACTAT
* *
14962167 ATACACATCAACTATACCATAATATATCATATATCTAATCATATCAAGAGTGTTTCTATCATCAT
261 ATACACATCAACTATACCATAATATATCATATATCTAATCATATCAAGAATGCTTCTATCATCAT
14962232 TACTA
326 TACTA
14962237 CCATTAACCC
Statistics
Matches: 315, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
347 315 1.00
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (347 bp):
ATTTGTATAAAGTAAGTATGATCTTTTCCTTTATTGCTATTTCTATCACTTGCATTTTTAACTTA
TACCCCAACTACATCTTCATTTTCTACTATTGCTGTCTCAACTATATCTTTATTTCCTATCCCTT
CATTCCTTATTGTCTCAGTTACATCTTGATTTTCTACCCCTTCATTCCCTATTACTTTAGCTACA
TTTTTCACTTCTTGTCCTGTTAAGAGCTCAAAAGCTAAAACAACTTCATCTACGCCATATACTAT
ATACACATCAACTATACCATAATATATCATATATCTAATCATATCAAGAATGCTTCTATCATCAT
TACTATTTCTATCACCATTACT
Found at i:14965249 original size:13 final size:13
Alignment explanation
Indices: 14965227--14965259 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
14965217 TAGTTTTAAG
*
14965227 AAAATGAAAATAA
1 AAAATAAAAATAA
14965240 AAAATAAAAATAA
1 AAAATAAAAATAA
14965253 AAAATAA
1 AAAATAA
14965260 TATCTTAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:14966354 original size:16 final size:15
Alignment explanation
Indices: 14966328--14966368 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
14966318 GTAATAATTT
*
14966328 TATTT-TTATATTAT
1 TATTTATTATATTAA
14966342 TAATTTATTATATTAA
1 T-ATTTATTATATTAA
14966358 TATTTA-TATAT
1 TATTTATTATAT
14966369 ACTAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 6 0.25
15 9 0.38
16 9 0.38
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTTATTATATTAA
Found at i:14967336 original size:27 final size:27
Alignment explanation
Indices: 14967271--14967325 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
14967261 TTCTGGATTA
* *
14967271 AGTACATAATTGGTTTAAAGGTTGTCG
1 AGTACATAATTGGTTTAAAAGTTATCG
14967298 AGTACATAATTGGTTTAAAAGTTATCG
1 AGTACATAATTGGTTTAAAAGTTATCG
14967325 A
1 A
14967326 AGTGATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.36
Consensus pattern (27 bp):
AGTACATAATTGGTTTAAAAGTTATCG
Found at i:14967394 original size:18 final size:18
Alignment explanation
Indices: 14967373--14967407 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14967363 TTTATCGAGG
14967373 TGAGCTCTTTTGATCAAT
1 TGAGCTCTTTTGATCAAT
*
14967391 TGAGCTCTTTTGGTCAA
1 TGAGCTCTTTTGATCAA
14967408 GCTAATCACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (18 bp):
TGAGCTCTTTTGATCAAT
Found at i:14967650 original size:25 final size:25
Alignment explanation
Indices: 14967616--14967679 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
14967606 TTTATCGAGA
*
14967616 TGAGCTCTTTTGATTGAGGTAAGCC
1 TGAGCTCTTTTGATCGAGGTAAGCC
*
14967641 TGAGCTCTTTTGACCGAGGTAAGCC
1 TGAGCTCTTTTGATCGAGGTAAGCC
**
14967666 CAAGCT-TTTTGATC
1 TGAGCTCTTTTGATC
14967680 AAGCTGTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 7 0.21
25 27 0.79
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.34
Consensus pattern (25 bp):
TGAGCTCTTTTGATCGAGGTAAGCC
Found at i:14968245 original size:85 final size:85
Alignment explanation
Indices: 14968140--14968305 Score: 210
Period size: 85 Copynumber: 2.0 Consensus size: 85
14968130 CTCTTGGTTA
* *
14968140 AGCTGAGTTCAAGCTCTTTGATAGAGCTTG-GTTATCAAATTTGGCCTTTATGAAGGCATTTTAT
1 AGCTGAGTTCAAGCTCTTTGATAGAG-TTGTGTTATCAAATTAGGCCATTATGAAGGCATTTTAT
* *
14968204 AAATTTGAGCTCTTTTGATCG
65 AAATCTAAGCTCTTTTGATCG
* * * * *
14968225 AGCTGAGTAT-AAGCTCTTTGATCGAGTTGTTTTGTTAAATTAGGCCATTATGAAGGCATTTTTT
1 AGCTGAGT-TCAAGCTCTTTGATAGAGTTGTGTTATCAAATTAGGCCATTATGAAGGCATTTTAT
*
14968289 AGATCTAAGCTCTTTTG
65 AAATCTAAGCTCTTTTG
14968306 GCCAAGTTGA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 3 0.04
85 65 0.94
86 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (85 bp):
AGCTGAGTTCAAGCTCTTTGATAGAGTTGTGTTATCAAATTAGGCCATTATGAAGGCATTTTATA
AATCTAAGCTCTTTTGATCG
Found at i:14968343 original size:85 final size:84
Alignment explanation
Indices: 14968174--14968473 Score: 199
Period size: 85 Copynumber: 3.5 Consensus size: 84
14968164 AGCTTGGTTA
* * *** * * * * ***
14968174 TCAAATTTGGCCTTTATGAAGGCATTTTATAAATTTGAGCTCTTTTGATCGAGCTGAGTATAAGC
1 TCAAATTAGGCC-TTATGAAGGCATTTTATAGATCCAAGCTCTTTTAACCAAGCTAAGTCCGAGC
* * *
14968239 TCTTTGA-TCGAGTTGTTTTG
65 TCTTT-ACTCAAGCTATTTTG
* * * ** * *
14968259 TTAAATTAGGCCATTATGAAGGCATTTTTTAGATCTAAGCTCTTTTGGCCAAGTTGAGTCCGAGC
1 TCAAATTAGGCC-TTATGAAGGCATTTTATAGATCCAAGCTCTTTTAACCAAGCTAAGTCCGAGC
14968324 TCTTTAACT-AAGCTATTTTG
65 TCTTT-ACTCAAGCTATTTTG
* * * * * * * ** *
14968344 TCAAGTTGGGCTTTTTTGAGGGCATTTTATAGATCCGAGGTCTTTTAACTGAGCTAAGTTCGAGC
1 TCAAATTAGGC-CTTATGAAGGCATTTTATAGATCCAAGCTCTTTTAACCAAGCTAAGTCCGAGC
**
14968409 TCTTTGGTCAAGCTATTTTG
65 TCTTTACTCAAGCTATTTTG
* * *
14968429 TCGAATTAGGCCTTCATGAAGGCATTTTGTAGACCCAAGCTCTTT
1 TCAAATTAGGCCTT-ATGAAGGCATTTTATAGATCCAAGCTCTTT
14968474 GACCGAGATA
Statistics
Matches: 164, Mismatches: 47, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
84 3 0.02
85 160 0.98
86 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.39
Consensus pattern (84 bp):
TCAAATTAGGCCTTATGAAGGCATTTTATAGATCCAAGCTCTTTTAACCAAGCTAAGTCCGAGCT
CTTTACTCAAGCTATTTTG
Found at i:14970084 original size:15 final size:15
Alignment explanation
Indices: 14970066--14970233 Score: 71
Period size: 15 Copynumber: 11.0 Consensus size: 15
14970056 TGAAGATTCG
14970066 GATTTTAAGGGTTTT
1 GATTTTAAGGGTTTT
14970081 GA-TTTAAGTGGTTTT
1 GATTTTAAG-GGTTTT
* * *
14970096 GAATTTT-GGGGTCTA
1 G-ATTTTAAGGGTTTT
* **
14970111 GA-TTTAAAGGTTGG
1 GATTTTAAGGGTTTT
14970125 GATTTT-AGGGTTTT
1 GATTTTAAGGGTTTT
* *
14970139 GGATTTTATGGGGTTTG
1 -GATTTTA-AGGGTTTT
*
14970156 GA-TTTAAGGGTTTAAA
1 GATTTTAAGGGTTT--T
* *
14970172 GGTTTT-AGGGTTTCA
1 GATTTTAAGGGTTT-T
*
14970187 GATTTTAAGGGGTTTG
1 GATTTTAA-GGGTTTT
*
14970203 GA-TTTAAGAGATTTT
1 GATTTTAAG-GGTTTT
*
14970218 GAATTTTAGGGGTTTT
1 G-ATTTTAAGGGTTTT
14970234 AGAATCCTAG
Statistics
Matches: 114, Mismatches: 23, Indels: 31
0.68 0.14 0.18
Matches are distributed among these distances:
13 3 0.03
14 24 0.21
15 43 0.38
16 21 0.18
17 23 0.20
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.46
Consensus pattern (15 bp):
GATTTTAAGGGTTTT
Found at i:14970088 original size:14 final size:14
Alignment explanation
Indices: 14970069--14970168 Score: 65
Period size: 14 Copynumber: 6.8 Consensus size: 14
14970059 AGATTCGGAT
14970069 TTTAAGGGTTTTGA
1 TTTAAGGGTTTTGA
14970083 TTTAAGTGGTTTTGAA
1 TTTAAG-GGTTTTG-A
** * *
14970099 TTTTGGGGTCTAGA
1 TTTAAGGGTTTTGA
* **
14970113 TTTAAAGGTTGGGA
1 TTTAAGGGTTTTGA
*
14970127 TTTTAGGGTTTTGGA
1 TTTAAGGGTTTT-GA
* *
14970142 TTTTATGGGGTTTGGA
1 -TTTA-AGGGTTTTGA
14970158 TTTAAGGGTTT
1 TTTAAGGGTTT
14970169 AAAGGTTTTA
Statistics
Matches: 63, Mismatches: 18, Indels: 10
0.69 0.20 0.11
Matches are distributed among these distances:
14 29 0.46
15 18 0.29
16 10 0.16
17 6 0.10
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.48
Consensus pattern (14 bp):
TTTAAGGGTTTTGA
Found at i:14970155 original size:16 final size:15
Alignment explanation
Indices: 14970065--14970232 Score: 76
Period size: 16 Copynumber: 11.0 Consensus size: 15
14970055 TTGAAGATTC
*
14970065 GGATTTTAAGGGTTT
1 GGATTTTAGGGGTTT
* * *
14970080 TGATTTAAGTGGTTTT
1 GGATTTTAG-GGGTTT
* *
14970096 GAATTTT-GGGGTCT
1 GGATTTTAGGGGTTT
* ** *
14970110 AGA-TTTAAAGGTTG
1 GGATTTTAGGGGTTT
*
14970124 GGATTTTAGGGTTTT
1 GGATTTTAGGGGTTT
14970139 GGATTTTATGGGGTTT
1 GGATTTTA-GGGGTTT
*
14970155 GGA-TTTAAGGGTTT
1 GGATTTTAGGGGTTT
14970169 AAAGG-TTTTA-GGGTTT
1 ---GGATTTTAGGGGTTT
*
14970185 CAGATTTTAAGGGGTTT
1 -GGATTTT-AGGGGTTT
* **
14970202 GGATTTAAGAGATTTT
1 GGATTTTAG-GGGTTT
*
14970218 GAATTTTAGGGGTTT
1 GGATTTTAGGGGTTT
14970233 TAGAATCCTA
Statistics
Matches: 109, Mismatches: 32, Indels: 24
0.66 0.19 0.15
Matches are distributed among these distances:
13 3 0.03
14 17 0.16
15 36 0.33
16 41 0.38
17 12 0.11
ACGTcount: A:0.21, C:0.01, G:0.32, T:0.46
Consensus pattern (15 bp):
GGATTTTAGGGGTTT
Found at i:14970225 original size:47 final size:45
Alignment explanation
Indices: 14970126--14970228 Score: 125
Period size: 47 Copynumber: 2.2 Consensus size: 45
14970116 AAAGGTTGGG
** *
14970126 ATTTTAGGGTTTTGGATTTTATGGGGTTTGGATTTAAGGGTTTAA
1 ATTTTAGGGTTTCAGATTTTAAGGGGTTTGGATTTAAGGGTTTAA
* *
14970171 AGGTTTTAGGGTTTCAGATTTTAAGGGGTTTGGATTTAAGAGATTTTGA
1 A--TTTTAGGGTTTCAGATTTTAAGGGGTTTGGATTTAAG-G-GTTTAA
14970220 ATTTTAGGG
1 ATTTTAGGG
14970229 GTTTTAGAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
45 1 0.02
47 42 0.86
48 1 0.02
49 5 0.10
ACGTcount: A:0.22, C:0.01, G:0.31, T:0.46
Consensus pattern (45 bp):
ATTTTAGGGTTTCAGATTTTAAGGGGTTTGGATTTAAGGGTTTAA
Found at i:14971345 original size:15 final size:16
Alignment explanation
Indices: 14971309--14971339 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14971299 GGAGGACTGT
14971309 GTTTGTCCTTTTTTTG
1 GTTTGTCCTTTTTTTG
*
14971325 GTTTGTTCTTTTTTT
1 GTTTGTCCTTTTTTT
14971340 TTTTGTATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.16, T:0.74
Consensus pattern (16 bp):
GTTTGTCCTTTTTTTG
Found at i:14971684 original size:10 final size:9
Alignment explanation
Indices: 14971667--14971721 Score: 65
Period size: 9 Copynumber: 5.7 Consensus size: 9
14971657 TCTGTTTCTC
14971667 TTTTTTTGT
1 TTTTTTTGT
14971676 TTATTTTTGTTT
1 TT-TTTTTG--T
14971688 ATTTTTTTGT
1 -TTTTTTTGT
14971698 TTTTTTTGT
1 TTTTTTTGT
*
14971707 TTTTTTTAT
1 TTTTTTTGT
14971716 TTTTTT
1 TTTTTT
14971722 ATAAAATTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
9 25 0.61
10 7 0.17
12 7 0.17
13 2 0.05
ACGTcount: A:0.05, C:0.00, G:0.07, T:0.87
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:14971692 original size:21 final size:20
Alignment explanation
Indices: 14971667--14971713 Score: 76
Period size: 22 Copynumber: 2.2 Consensus size: 20
14971657 TCTGTTTCTC
14971667 TTTTTTTGTTTATTTTTGTTT
1 TTTTTTTGTTT-TTTTTGTTT
14971688 ATTTTTTTGTTTTTTTTGTTT
1 -TTTTTTTGTTTTTTTTGTTT
14971709 TTTTT
1 TTTTT
14971714 ATTTTTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 5 0.20
21 9 0.36
22 11 0.44
ACGTcount: A:0.04, C:0.00, G:0.09, T:0.87
Consensus pattern (20 bp):
TTTTTTTGTTTTTTTTGTTT
Found at i:14972165 original size:34 final size:34
Alignment explanation
Indices: 14972127--14972259 Score: 108
Period size: 34 Copynumber: 3.9 Consensus size: 34
14972117 TGAATCAGAG
*
14972127 AATAAAGAGACCGGGATTAAACCACGAGTCAAAA
1 AATAAAGAGATCGGGATTAAACCACGAGTCAAAA
* * * ***
14972161 AATAATA-ACAATCGAGATTAAACTACGA-TTTTAA
1 AATAA-AGA-GATCGGGATTAAACCACGAGTCAAAA
* * * *
14972195 ATTAAAGAGATCGGGATTAAACCGCGAATCGAAA
1 AATAAAGAGATCGGGATTAAACCACGAGTCAAAA
* * *
14972229 AATAAAAAGATCAGGATTAAACCATGAGTCA
1 AATAAAGAGATCGGGATTAAACCACGAGTCA
14972260 GAAGATAACA
Statistics
Matches: 73, Mismatches: 22, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
33 16 0.22
34 41 0.56
35 16 0.22
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (34 bp):
AATAAAGAGATCGGGATTAAACCACGAGTCAAAA
Found at i:14972487 original size:209 final size:209
Alignment explanation
Indices: 14972125--14972989 Score: 1069
Period size: 209 Copynumber: 4.2 Consensus size: 209
14972115 CGTGAATCAG
* * *
14972125 AGAATAAAGAGACCGGGATTAAACCACGAGTCA-AA-A-AATAATAACAATCGAGATTAAACTAC
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAGAAGATAACAATAACAATCGAGATTAAACTAC
* * * *
14972187 GATTTTAAATTAAAGAGATCGGGATTAAACCGCGAATCGAAAAATAAAAAGATCAGGATTAAACC
66 GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGAAGAATAAAAAGATCGGGATTAAACC
* * * *
14972252 ATGAGTCAGAAGATAACAACAACAATCGAGATTAAACTGTGATTTTAAATTAAAGAAATCGGGAT
131 ACGAGTCA-AAGATAACAATAACAATCGAGATTAAACTGTGATTTTAAATTAAAGAGATCGAGAT
*
14972317 TGAACCGCGAATCGA
195 TGAACCGCAAATCGA
* *
14972332 AGAATAAAAAGATCGAGATTAAACCACGAGTTAGAAGATAACAATAAC-ATCGAGATTAAACTAC
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAGAAGATAACAATAACAATCGAGATTAAACTAC
* * **
14972396 GATTTTAAATTAAAGAGATCGGGATTGAATCGTAAATCGAAGAATAAAAAGATCGGGATTAAACC
66 GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGAAGAATAAAAAGATCGGGATTAAACC
14972461 ACGAGTCAGAAGATAACAATAACAATCGAGATTAAACTGTGATTTTAAATTAAAGAGATCGAGAT
131 ACGAGTCA-AAGATAACAATAACAATCGAGATTAAACTGTGATTTTAAATTAAAGAGATCGAGAT
* *
14972526 TGAATCGTAAATCGA
195 TGAACCGCAAATCGA
** * * * * **
14972541 AGAATAAAAAGATCGAAATTAAACCACGAGCCAGAATATAATAACAACAATCGAGATTAAACTGT
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAGAAGATAACAATAACAATCGAGATTAAACTAC
* * * * *
14972606 GATTTTAAATTAAAAAGATCGAGATTGAATCACGAATTGAAGAATAAAAAGATCTGGATTAAACC
66 GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGAAGAATAAAAAGATCGGGATTAAACC
* * ** ** *
14972671 ACGAGTCAAA-A-AATAATAAAAATTAAGATTAAACTACGATTTTAAATTAAAGAGATCGAAATT
131 ACGAGTCAAAGATAACAATAACAATCGAGATTAAACTGTGATTTTAAATTAAAGAGATCGAGATT
* *
14972734 GAACCACGAATCGA
196 GAACCGCAAATCGA
* * * * *
14972748 AGAATAAAAAGATGGGGATTAAACCACAAATCAGAAGATAAC---AACAATCAAGATTAAACTGC
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAGAAGATAACAATAACAATCGAGATTAAACTAC
* *
14972810 GATTTTAAATTAAAGAAATCGAGATTGAACCGCGAATC-AGAGAATAAAAAGATCGAGATTAAAC
66 GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA-AGAATAAAAAGATCGGGATTAAAC
* * *
14972874 CGCGAGTCAAAGGATAAC---AACAATCGAGATTAAACTGTGACTTTGAATTAAAGAGATC-AGG
130 CACGAGTCAAA-GATAACAATAACAATCGAGATTAAACTGTGATTTTAAATTAAAGAGATCGA-G
*
14972935 ATTGAACCGTAAATC-A
193 ATTGAACCGCAAATCGA
* *
14972951 GAGAATAAAAAAATGGGGATTAAACCACGAGTCA-AAGAT
1 -AGAATAAAAAGATCGGGATTAAACCACGAGTCAGAAGAT
14972990 TAAATATGAT
Statistics
Matches: 571, Mismatches: 77, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
203 8 0.01
204 158 0.28
206 1 0.00
207 120 0.21
208 3 0.01
209 193 0.34
210 88 0.15
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (209 bp):
AGAATAAAAAGATCGGGATTAAACCACGAGTCAGAAGATAACAATAACAATCGAGATTAAACTAC
GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGAAGAATAAAAAGATCGGGATTAAACC
ACGAGTCAAAGATAACAATAACAATCGAGATTAAACTGTGATTTTAAATTAAAGAGATCGAGATT
GAACCGCAAATCGA
Found at i:14972658 original size:34 final size:34
Alignment explanation
Indices: 14972616--14972874 Score: 127
Period size: 34 Copynumber: 7.6 Consensus size: 34
14972606 GATTTTAAAT
* *
14972616 TAAAAAGATCGAGATTGAATCACGAATTGAAGAA
1 TAAAAAGATCGAGATTGAACCACGAATCGAAGAA
* * * *
14972650 TAAAAAGATCTG-GATTAAACCACGAGTCAAAAAA
1 TAAAAAGATC-GAGATTGAACCACGAATCGAAGAA
* ** * * * ** *
14972684 TAATAAAAATTAAGATTAAACTACGATTTTAA-AT
1 TAA-AAAGATCGAGATTGAACCACGAATCGAAGAA
* *
14972718 TAAAGAGATCGAAATTGAACCACGAATCGAAGAA
1 TAAAAAGATCGAGATTGAACCACGAATCGAAGAA
* * * *
14972752 TAAAAAGATGGGGATTAAACCACAAATCAGAAG-A
1 TAAAAAGATCGAGATTGAACCACGAATC-GAAGAA
* * ** * ** *
14972786 TAACAACA-ATCAAGATTAAACTGCGATTTTAA-AT
1 TAA-AA-AGATCGAGATTGAACCACGAATCGAAGAA
*
14972820 TAAAGAA-ATCGAGATTGAACCGCGAATC-AGAGAA
1 TAAA-AAGATCGAGATTGAACCACGAATCGA-AGAA
*
14972854 TAAAAAGATCGAGATTAAACC
1 TAAAAAGATCGAGATTGAACC
14972875 GCGAGTCAAA
Statistics
Matches: 165, Mismatches: 48, Indels: 24
0.70 0.20 0.10
Matches are distributed among these distances:
32 1 0.01
33 39 0.24
34 84 0.51
35 40 0.24
36 1 0.01
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (34 bp):
TAAAAAGATCGAGATTGAACCACGAATCGAAGAA
Found at i:14972756 original size:102 final size:102
Alignment explanation
Indices: 14972125--14972986 Score: 1010
Period size: 102 Copynumber: 8.3 Consensus size: 102
14972115 CGTGAATCAG
* * * *
14972125 AGAATAAAGAGACCGGGATTAAACCACGAGTCAAAAAATAATAACAATCGAGATTAAACTACGAT
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGAT
* *
14972190 TTTAAATTAAAGAGATCGGGATTAAACCGCGAATCGA
66 TTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
* * * * *
14972227 AAAATAAAAAGATCAGGATTAAACCATGAGTCAGAAGATAACAACAACAATCGAGATTAAACTGT
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCA-AA-A-AATAACAACAATCGAGATTAAACTGC
* *
14972292 GATTTTAAATTAAAGAAATCGGGATTGAACCGCGAATCGA
63 GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
* * * * * *
14972332 AGAATAAAAAGATCGAGATTAAACCACGAGTTAGAAGATAACAATAACATCGAGATTAAACTACG
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAAAAAATAACAA-CA-ATCGAGATTAAACTGCG
* * **
14972397 ATTTTAAATTAAAGAGATCGGGATTGAATCGTAAATCGA
64 ATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
* * *
14972436 AGAATAAAAAGATCGGGATTAAACCACGAGTCAGAAGATAACAATAACAATCGAGATTAAACTGT
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCA-AA-A-AATAACAACAATCGAGATTAAACTGC
* **
14972501 GATTTTAAATTAAAGAGATCGAGATTGAATCGTAAATCGA
63 GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
** * *
14972541 AGAATAAAAAGATCGAAATTAAACCACGAGCCAGAATATAATAACAACAATCGAGATTAAACTGT
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCA-AA-A-AATAACAACAATCGAGATTAAACTGC
* * * *
14972606 GATTTTAAATTAAAAAGATCGAGATTGAATCACGAATTGA
63 GATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
* * * ** *
14972646 AGAATAAAAAGATCTGGATTAAACCACGAGTCAAAAAATAATAAAAATTAAGATTAAACTACGAT
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGAT
* *
14972711 TTTAAATTAAAGAGATCGAAATTGAACCACGAATCGA
66 TTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
* * * * * *
14972748 AGAATAAAAAGATGGGGATTAAACCACAAATCAGAAGATAACAACAATCAAGATTAAACTGCGAT
1 AGAATAAAAAGATCGGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGAT
*
14972813 TTTAAATTAAAGAAATCGAGATTGAACCGCGAATC-A
66 TTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
* * ** *
14972849 GAGAATAAAAAGATCGAGATTAAACCGCGAGTCAAAGGATAACAACAATCGAGATTAAACTGTGA
1 -AGAATAAAAAGATCGGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGA
* * **
14972914 CTTTGAATTAAAGAGATC-AGGATTGAACCGTAAATC-A
65 TTTTAAATTAAAGAGATCGA-GATTGAACCGCGAATCGA
* *
14972951 GAGAATAAAAAAATGGGGATTAAACCACGAGTCAAA
1 -AGAATAAAAAGATCGGGATTAAACCACGAGTCAAA
14972987 GATTAAATAT
Statistics
Matches: 658, Mismatches: 92, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
101 2 0.00
102 294 0.45
103 5 0.01
104 85 0.13
105 265 0.40
106 2 0.00
107 5 0.01
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (102 bp):
AGAATAAAAAGATCGGGATTAAACCACGAGTCAAAAAATAACAACAATCGAGATTAAACTGCGAT
TTTAAATTAAAGAGATCGAGATTGAACCGCGAATCGA
Found at i:14972875 original size:34 final size:33
Alignment explanation
Indices: 14972725--14972908 Score: 106
Period size: 34 Copynumber: 5.4 Consensus size: 33
14972715 AATTAAAGAG
* * *
14972725 ATCGAAATTGAACCACGAATC-GAAGAATAAAAA
1 ATCGAGATTAAACCGCGAATCAG-AGAATAAAAA
* * * *
14972758 GATGGGGATTAAACCACAAATCAGA-AGATAACAACA
1 -ATCGAGATTAAACCGCGAATCAGAGA-ATAA-AA-A
* * * * *
14972794 ATCAAGATTAAACTGCGATTTTA-A-ATTAAAGAA
1 ATCGAGATTAAACCGCGA-ATCAGAGAATAAA-AA
*
14972827 ATCGAGATTGAACCGCGAATCAGAGAATAAAAA
1 ATCGAGATTAAACCGCGAATCAGAGAATAAAAA
* * *
14972860 GATCGAGATTAAACCGCGAGTCAAAGGATAACAACA
1 -ATCGAGATTAAACCGCGAATCAGAGAATAA-AA-A
14972896 ATCGAGATTAAAC
1 ATCGAGATTAAAC
14972909 TGTGACTTTG
Statistics
Matches: 115, Mismatches: 24, Indels: 21
0.72 0.15 0.13
Matches are distributed among these distances:
32 2 0.02
33 21 0.18
34 56 0.49
35 32 0.28
36 4 0.03
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (33 bp):
ATCGAGATTAAACCGCGAATCAGAGAATAAAAA
Found at i:14973057 original size:38 final size:36
Alignment explanation
Indices: 14972966--14973057 Score: 96
Period size: 38 Copynumber: 2.5 Consensus size: 36
14972956 TAAAAAAATG
* * *
14972966 GGGATTAAACCACGAGTC-AAAGATTAAATATGATT
1 GGGATTAAACCACGAGTCAAAAAATTAAAAATGATC
* * *
14973001 GGGACTAAACCGCAAGTCAAAAAATTAATGAAATGATC
1 GGGATTAAACCACGAGTCAAAAAATTAA--AAATGATC
*
14973039 GGGATTAAACCATGAGTCA
1 GGGATTAAACCACGAGTCA
14973058 GAAGATAACA
Statistics
Matches: 44, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
35 15 0.34
36 8 0.18
38 21 0.48
ACGTcount: A:0.43, C:0.14, G:0.21, T:0.22
Consensus pattern (36 bp):
GGGATTAAACCACGAGTCAAAAAATTAAAAATGATC
Found at i:14973271 original size:39 final size:39
Alignment explanation
Indices: 14973228--14973424 Score: 114
Period size: 39 Copynumber: 5.2 Consensus size: 39
14973218 TTAAATCGTA
* *
14973228 AGTCAGAGAAATAATAGAAATGATAGGGATTAAACTACG
1 AGTCAAAGAAATAATAGAAATGATCGGGATTAAACTACG
* * * *
14973267 AGTCAAAG-ATTAA-AG--ATGATTGGGACTAAACTACA
1 AGTCAAAGAAATAATAGAAATGATCGGGATTAAACTACG
* * *
14973302 AGTCAAAAAAACT-ATAGAAATTATCGAGATTAAA-TAACG
1 AGTCAAAGAAA-TAATAGAAATGATCGGGATTAAACT-ACG
* * *
14973341 AGT--GAGAAA-AATAAAAATGA-CTGGGATTAAA-TCACA
1 AGTCAAAGAAATAATAGAAATGATC-GGGATTAAACT-ACG
* * *
14973377 AGTC-AAGAAAGCT-ATAGCAATGATCGGGATTAAACCATG
1 AGTCAAAGAAA--TAATAGAAATGATCGGGATTAAACTACG
14973416 AGTCAAAGA
1 AGTCAAAGA
14973425 TTAACGACGA
Statistics
Matches: 118, Mismatches: 25, Indels: 29
0.69 0.15 0.17
Matches are distributed among these distances:
35 25 0.21
36 24 0.20
37 14 0.12
38 5 0.04
39 45 0.38
40 5 0.04
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.21
Consensus pattern (39 bp):
AGTCAAAGAAATAATAGAAATGATCGGGATTAAACTACG
Found at i:14973408 original size:75 final size:74
Alignment explanation
Indices: 14973196--14973420 Score: 208
Period size: 74 Copynumber: 3.0 Consensus size: 74
14973186 AATGCAAGTT
* ** *
14973196 AGAAAGATAAAAGA-GATTGGGATTAAATCGTAAGTCAGAGAAA-TAATAGAAATGATAGGGATT
1 AGAAAAATAAAA-ATGATTGGGATTAAATCACAAGTCA-AGAAACT-ATAGAAATGATCGGGATT
14973259 AAACTACGAGTC
63 AAACTACGAGTC
* * * * * * *
14973271 A-AAGATTAAAGATGATTGGGACTAAA-CTACAAGTCAAAAAAACTATAGAAATTATCGAGATTA
1 AGAAAAATAAAAATGATTGGGATTAAATC-ACAAGTC-AAGAAACTATAGAAATGATCGGGATTA
*
14973334 AA-TAACGAGTG
64 AACT-ACGAGTC
* *
14973345 AGAAAAATAAAAATGACTGGGATTAAATCACAAGTCAAGAAAGCTATAGCAATGATCGGGATTAA
1 AGAAAAATAAAAATGATTGGGATTAAATCACAAGTCAAGAAA-CTATAGAAATGATCGGGATTAA
* *
14973410 ACCATGAGTC
65 ACTACGAGTC
14973420 A
1 A
14973421 AAGATTAACG
Statistics
Matches: 117, Mismatches: 24, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
73 3 0.03
74 57 0.49
75 56 0.48
76 1 0.01
ACGTcount: A:0.48, C:0.10, G:0.20, T:0.21
Consensus pattern (74 bp):
AGAAAAATAAAAATGATTGGGATTAAATCACAAGTCAAGAAACTATAGAAATGATCGGGATTAAA
CTACGAGTC
Found at i:14973674 original size:110 final size:109
Alignment explanation
Indices: 14973461--14973754 Score: 333
Period size: 110 Copynumber: 2.7 Consensus size: 109
14973451 AGTCAAAAAA
* * * * * ** *
14973461 ATAAAGAATCGATCGGAAGAACATCGCAAATCGAATTTATGTTCGAAGGTCTTAGAAATCATGCC
1 ATAAAGAATCAATCGGGATAACATCGCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCATG-C
* * *
14973526 CGAAGGTCTTATAGAATCAACTGGGATAACACTACAAGTCGAAAG
65 CGGAGGTCTTATAGAATCAACTGGAAAAACACTACAAGTCGAAAG
* * *
14973571 ATAAAGAATCAATCGGGATAACATCGTGAATCAAAATTATGCCCGGAGGTCTTACAGAATCATGT
1 ATAAAGAATCAATCGGGATAACATCGCGAATCGAAATTATGCCCGGAGGTCTTAGA-AATCATG-
* * *
14973636 CCGGAGGTCTTATAGAATCGACT-GAAAAATA-TCGCAAGTCGAAAG
64 CCGGAGGTCTTATAGAATCAACTGGAAAAACACT-ACAAGTCGAAAG
* * *
14973681 AT-AAGAAATCAATCAGGATAACACCGCGAATTGAAATTATGCCCGGAGGTCTTAGAAATCATGC
1 ATAAAG-AATCAATCGGGATAACATCGCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCATGC
14973745 CTGGAGGTCT
65 C-GGAGGTCT
14973755 GAGAAATCAT
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
108 2 0.01
109 19 0.12
110 107 0.69
111 28 0.18
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.23
Consensus pattern (109 bp):
ATAAAGAATCAATCGGGATAACATCGCGAATCGAAATTATGCCCGGAGGTCTTAGAAATCATGCC
GGAGGTCTTATAGAATCAACTGGAAAAACACTACAAGTCGAAAG
Found at i:14973744 original size:22 final size:22
Alignment explanation
Indices: 14973713--14973778 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
14973703 ACCGCGAATT
*
14973713 GAAATTATGCCCGGAGGTCTTA
1 GAAATCATGCCCGGAGGTCTTA
* *
14973735 GAAATCATGCCTGGAGGTCTGA
1 GAAATCATGCCCGGAGGTCTTA
* *
14973757 GAAATCATGTCCAGAGGTCTTA
1 GAAATCATGCCCGGAGGTCTTA
14973779 CAGAATCGAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (22 bp):
GAAATCATGCCCGGAGGTCTTA
Found at i:14973777 original size:131 final size:134
Alignment explanation
Indices: 14973604--14973876 Score: 354
Period size: 132 Copynumber: 2.1 Consensus size: 134
14973594 TCGTGAATCA
* * * * *
14973604 AAATTATGCCCGGAGGTCTTACAGAATCATGTCCGGAGGTCTTATAGAATCGACT-GAAAAATAT
1 AAATCATGCCCGGAGGTCTGACAGAATCATGTCCAGAGGTCTTACAGAATCGACTGGAAAAATAC
* * * * *
14973668 CGCAAGTCGAAAGATAAGAAATCAATCAGGATAACACCGCGAATTGAAATTATGCCCGGAGGTCT
66 CACAAGTCAAAAGATAAAAAATCAATCAGGATAACACCACGAATCGAAATTATGCCCGGAGGTCT
14973733 TA-G
131 TACG
* * * *
14973736 AAATCATGCCTGGAGGTCTGAGA-AATCATGTCCAGAGGTCTTACAGAATCGACTGGGATAATAC
1 AAATCATGCCCGGAGGTCTGACAGAATCATGTCCAGAGGTCTTACAGAATCGACTGGAAAAATAC
* * * * *
14973800 CATAAGTCAAAAGATAAAAAATCGATCGGGATAACACCACGAATCGAATTTATGCCTGGAGGTCT
66 CACAAGTCAAAAGATAAAAAATCAATCAGGATAACACCACGAATCGAAATTATGCCCGGAGGTCT
14973865 TACG
131 TACG
14973869 AAATCATG
1 AAATCATG
14973877 TCCGAAAGTC
Statistics
Matches: 120, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
131 29 0.24
132 82 0.68
133 9 0.08
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (134 bp):
AAATCATGCCCGGAGGTCTGACAGAATCATGTCCAGAGGTCTTACAGAATCGACTGGAAAAATAC
CACAAGTCAAAAGATAAAAAATCAATCAGGATAACACCACGAATCGAAATTATGCCCGGAGGTCT
TACG
Found at i:14973922 original size:22 final size:22
Alignment explanation
Indices: 14973849--14973922 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
14973839 CGAATCGAAT
14973849 TTATGCCTGGAGGTCTTACGAAA
1 TTATGCCTGGAGGTCTTA-GAAA
* * *
14973872 TCATGTCC-GAAAGTCTT-GAAA
1 TTATG-CCTGGAGGTCTTAGAAA
* *
14973893 GTTGTGCCTGGAGGTCTTAGAGA
1 -TTATGCCTGGAGGTCTTAGAAA
14973916 TTATGCC
1 TTATGCC
14973923 CGAAAGTCTT
Statistics
Matches: 38, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
21 6 0.16
22 16 0.42
23 14 0.37
24 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (22 bp):
TTATGCCTGGAGGTCTTAGAAA
Found at i:14974122 original size:41 final size:41
Alignment explanation
Indices: 14974066--14974167 Score: 145
Period size: 41 Copynumber: 2.5 Consensus size: 41
14974056 TGATGAAGGT
* *
14974066 TTCCTC-TAAACAGAGGCTTTGAAATCTTGATTGAA-ATTGG
1 TTCCTCTTAAATAGAGGCTTTGAAATCTTGATT-AAGAATGG
14974106 TTCCTCTTAAATAGAGGCTTTGAAATCTTGATTAAGAATGG
1 TTCCTCTTAAATAGAGGCTTTGAAATCTTGATTAAGAATGG
* *
14974147 TTCATCTTAAATAGAGACTTT
1 TTCCTCTTAAATAGAGGCTTT
14974168 AAAACTTTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
40 8 0.14
41 48 0.86
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (41 bp):
TTCCTCTTAAATAGAGGCTTTGAAATCTTGATTAAGAATGG
Found at i:14975925 original size:21 final size:21
Alignment explanation
Indices: 14975901--14975957 Score: 64
Period size: 20 Copynumber: 2.7 Consensus size: 21
14975891 TGTTTGTTTT
14975901 TTTTTCTCTTTTTTTTTTTAC
1 TTTTTCTCTTTTTTTTTTTAC
**
14975922 TTTTT-T-TGTTTTTTTTTTGT
1 TTTTTCTCT-TTTTTTTTTTAC
14975942 TTTTTCATCTTTTTTT
1 TTTTTC-TCTTTTTTT
14975958 ACTCAAGGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
19 1 0.03
20 16 0.53
21 5 0.17
22 7 0.23
23 1 0.03
ACGTcount: A:0.04, C:0.09, G:0.04, T:0.84
Consensus pattern (21 bp):
TTTTTCTCTTTTTTTTTTTAC
Found at i:14976511 original size:9 final size:9
Alignment explanation
Indices: 14976497--14976529 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
14976487 AAAAAAAAAC
14976497 TTTTTTTCT
1 TTTTTTTCT
14976506 TTTTTTTC-
1 TTTTTTTCT
*
14976514 TTTTTTTAT
1 TTTTTTTCT
14976523 TTTTTTT
1 TTTTTTT
14976530 AAAATTGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.03, C:0.06, G:0.00, T:0.91
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:14976518 original size:17 final size:17
Alignment explanation
Indices: 14976496--14976529 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14976486 CAAAAAAAAA
*
14976496 CTTTTTTTCTTTTTTTT
1 CTTTTTTTATTTTTTTT
14976513 CTTTTTTTATTTTTTTT
1 CTTTTTTTATTTTTTTT
14976530 AAAATTGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (17 bp):
CTTTTTTTATTTTTTTT
Found at i:14981251 original size:15 final size:15
Alignment explanation
Indices: 14981233--14981334 Score: 54
Period size: 15 Copynumber: 6.9 Consensus size: 15
14981223 GAAGATTCGA
14981233 ATTTTAAGGGTTTTG
1 ATTTTAAGGGTTTTG
14981248 A-TTTAAGTGGTTTTG
1 ATTTTAAG-GGTTTTG
*
14981263 AATTTT--GGAGTTTGG
1 -ATTTTAAGG-GTTTTG
* **
14981278 A-TTTAAAGGTTGAG
1 ATTTTAAGGGTTTTG
14981292 ATTTT-AGGGTTTTGG
1 ATTTTAAGGGTTTT-G
* *
14981307 ATTTTATGGGGTTTGG
1 ATTTTA-AGGGTTTTG
*
14981323 A-TGTAAGGGTTT
1 ATTTTAAGGGTTT
14981335 AAAGGTTTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 21
0.67 0.11 0.21
Matches are distributed among these distances:
13 3 0.05
14 24 0.36
15 27 0.41
16 3 0.05
17 9 0.14
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (15 bp):
ATTTTAAGGGTTTTG
Found at i:14981254 original size:14 final size:14
Alignment explanation
Indices: 14981235--14981334 Score: 58
Period size: 14 Copynumber: 6.8 Consensus size: 14
14981225 AGATTCGAAT
14981235 TTTAAGGGTTTTGA
1 TTTAAGGGTTTTGA
14981249 TTTAAGTGGTTTTGAA
1 TTTAAG-GGTTTTG-A
* *
14981265 TTT-TGGAGTTTGGA
1 TTTAAGG-GTTTTGA
* **
14981279 TTTAAAGGTTGAGA
1 TTTAAGGGTTTTGA
*
14981293 TTTTAGGGTTTTGGA
1 TTTAAGGGTTTT-GA
* *
14981308 TTTTATGGGGTTTGGA
1 -TTTA-AGGGTTTTGA
*
14981324 TGTAAGGGTTT
1 TTTAAGGGTTT
14981335 AAAGGTTTTA
Statistics
Matches: 64, Mismatches: 15, Indels: 14
0.69 0.16 0.15
Matches are distributed among these distances:
14 30 0.47
15 19 0.30
16 9 0.14
17 6 0.09
ACGTcount: A:0.20, C:0.00, G:0.32, T:0.48
Consensus pattern (14 bp):
TTTAAGGGTTTTGA
Found at i:14981323 original size:16 final size:15
Alignment explanation
Indices: 14981233--14981324 Score: 55
Period size: 16 Copynumber: 6.1 Consensus size: 15
14981223 GAAGATTCGA
* *
14981233 ATTTTAAGGGTTTTG
1 ATTTTAGGGGTTTGG
* * *
14981248 ATTTAAGTGGTTTTGA
1 ATTTTAG-GGGTTTGG
*
14981264 ATTTT-GGAGTTTGG
1 ATTTTAGGGGTTTGG
**
14981278 A-TTTAAAGG-TTGAG
1 ATTTTAGGGGTTTG-G
*
14981292 ATTTTAGGGTTTTGG
1 ATTTTAGGGGTTTGG
14981307 ATTTTATGGGGTTTGG
1 ATTTTA-GGGGTTTGG
14981323 AT
1 AT
14981325 GTAAGGGTTT
Statistics
Matches: 55, Mismatches: 16, Indels: 11
0.67 0.20 0.13
Matches are distributed among these distances:
13 6 0.11
14 9 0.16
15 18 0.33
16 22 0.40
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (15 bp):
ATTTTAGGGGTTTGG
Found at i:14981391 original size:47 final size:45
Alignment explanation
Indices: 14981272--14981391 Score: 134
Period size: 47 Copynumber: 2.6 Consensus size: 45
14981262 GAATTTTGGA
* * * *
14981272 GTTTGGATTTAAAGG-TTGAGATTTTAGGGTTTTGGATTTTATGGG
1 GTTTGGATTTAAGGGTTTGA-ATTTTAAGGTTTCGGATCTTATGGG
* *
14981317 GTTTGGATGTAAGGGTTTAAAGGTTTTAAGGTTTCGGATCTTATGGG
1 GTTTGGATTTAAGGGTTTGAA--TTTTAAGGTTTCGGATCTTATGGG
14981364 GTTTGGATTTAAGGGATTTTGAATTTTA
1 GTTTGGATTTAAGGG--TTTGAATTTTA
14981392 GAGTTTTTAG
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
45 14 0.23
46 3 0.05
47 40 0.65
49 5 0.08
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.45
Consensus pattern (45 bp):
GTTTGGATTTAAGGGTTTGAATTTTAAGGTTTCGGATCTTATGGG
Found at i:14982719 original size:11 final size:11
Alignment explanation
Indices: 14982703--14982727 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14982693 GAACAGGTGA
14982703 TGGCTGTAGGG
1 TGGCTGTAGGG
14982714 TGGCTGTAGGG
1 TGGCTGTAGGG
14982725 TGG
1 TGG
14982728 TTAACGTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.56, T:0.28
Consensus pattern (11 bp):
TGGCTGTAGGG
Found at i:14982883 original size:3 final size:3
Alignment explanation
Indices: 14982877--14982909 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14982867 TATATTTTTT
14982877 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14982910 ATGGTAGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14984434 original size:29 final size:30
Alignment explanation
Indices: 14984397--14984461 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
14984387 TTATTATTAT
14984397 TTTTAATAAAATTAAAATTTTAAAA-ATAAA
1 TTTT-ATAAAATTAAAATTTTAAAATATAAA
** *
14984427 TTTTATAAAATTTGAATTTTAAAATTTAAA
1 TTTTATAAAATTAAAATTTTAAAATATAAA
14984457 TTTTA
1 TTTTA
14984462 AATTTTCGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (30 bp):
TTTTATAAAATTAAAATTTTAAAATATAAA
Found at i:14984466 original size:13 final size:14
Alignment explanation
Indices: 14984403--14984463 Score: 70
Period size: 14 Copynumber: 4.3 Consensus size: 14
14984393 TTATTTTTAA
*
14984403 TAAAATTAAAATTT
1 TAAAATTTAAATTT
*
14984417 TAAAA-ATAAATTTT
1 TAAAATTTAAA-TTT
*
14984431 ATAAAATTTGAATTT
1 -TAAAATTTAAATTT
14984446 TAAAATTTAAATTT
1 TAAAATTTAAATTT
14984460 TAAA
1 TAAA
14984464 TTTTCGAACT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 3 0.08
14 25 0.64
15 8 0.21
16 3 0.08
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
TAAAATTTAAATTT
Found at i:14984968 original size:13 final size:13
Alignment explanation
Indices: 14984945--14984979 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
14984935 TAGCTGTTTC
*
14984945 TATTGATATTTGTA
1 TATT-ATATTTATA
14984959 TATTATATTTATA
1 TATTATATTTATA
14984972 TATTATAT
1 TATTATAT
14984980 ACAAAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (13 bp):
TATTATATTTATA
Found at i:14987825 original size:37 final size:37
Alignment explanation
Indices: 14987775--14987852 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
14987765 AATTTCTCTA
*
14987775 ATTTGAGGAAAAATAGGACGGATGGGGTACAAGAAAG
1 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
14987812 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
1 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
14987849 ATTT
1 ATTT
14987853 TAATATAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.44, C:0.05, G:0.32, T:0.19
Consensus pattern (37 bp):
ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
Found at i:14990686 original size:16 final size:16
Alignment explanation
Indices: 14990665--14990698 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14990655 TAAAAATAAG
* *
14990665 TAAATTTGTAATATGT
1 TAAATTTGCAACATGT
14990681 TAAATTTGCAACATGT
1 TAAATTTGCAACATGT
14990697 TA
1 TA
14990699 TGAGTAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
TAAATTTGCAACATGT
Found at i:14990745 original size:6 final size:6
Alignment explanation
Indices: 14990734--14990758 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14990724 ATTGCTACAT
14990734 TAGAAA TAGAAA TAGAAA TAGAAA T
1 TAGAAA TAGAAA TAGAAA TAGAAA T
14990759 GCATGTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (6 bp):
TAGAAA
Found at i:14992565 original size:16 final size:16
Alignment explanation
Indices: 14992523--14992556 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14992513 AAAGATTCTT
*
14992523 GATAAGCAAATTAGTA
1 GATAAGTAAATTAGTA
14992539 GATAAGTAAATTAGTA
1 GATAAGTAAATTAGTA
14992555 GA
1 GA
14992557 CTTATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (16 bp):
GATAAGTAAATTAGTA
Found at i:14993483 original size:12 final size:13
Alignment explanation
Indices: 14993460--14993506 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
14993450 TTATATATAC
*
14993460 TAAAAATTATTTA
1 TAAATATTATTTA
14993473 TAAAT-TTATTTA
1 TAAATATTATTTA
* *
14993485 AAAATATTTTTTGA
1 TAAATATTATTT-A
14993499 TAAATATT
1 TAAATATT
14993507 TAAAAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
12 11 0.39
13 9 0.32
14 8 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (13 bp):
TAAATATTATTTA
Found at i:14994972 original size:85 final size:85
Alignment explanation
Indices: 14994698--14995518 Score: 434
Period size: 85 Copynumber: 9.7 Consensus size: 85
14994688 GCTTTTTGAC
* * * * * * **
14994698 CGAGCTATTTTGTCGAATT-GAGCTTTTAT-AAAGTATTTTGTAGATCTAAGGTCTTTTAGCCAA
1 CGAGCTGTTTTGTCGAATTAG-GCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCAA
* * * * *
14994761 GCTAAGTCTAAGCT-TTTTGAC
65 GCTGAGCCTGAGCTCTTTAG-T
* * * * * *** *
14994782 CTAGTTGTTTTGTTGAATTAGGCCTTTATGAAAGCATTTTATAGATTTGAGCTCTTTTAGTCAAG
1 CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCAAG
* *
14994847 CTGAG-TTCGAGCTCTTTTA-C
66 CTGAGCCT-GAGCTC-TTTAGT
* * * * ** * * *
14994867 CAAACTATTTTATCTTATTAGGCCTTTATGAAGGCATTTTGTATATCTAAGCTCTTTTAATCAAA
1 CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCAAG
*
14994932 CTGAGCCTGAGCTCTTTGGT
66 CTGAGCCTGAGCTCTTTAGT
* * * * * * * *
14994952 TGAGTTGTTTTCTCGAATTAGGCTTTTATGAAGGTATTTTGTAGATCCTAGCTCTTTTAGTTAAG
1 CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCAAG
* *
14995017 CTGAGTCTGAGCTTTTTAGT
66 CTGAGCCTGAGCTCTTTAGT
* * * * ** * ** ** **
14995037 CAAGCTGTTATGTCGAATTAGACCTTTATAAAGATATTTTGTAGATCCGATATCTTTTGGTTTAG
1 CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCAAG
* * *
14995102 CTGAG-TTCAAGTTCTTTAG-
66 CTGAGCCT-GAGCTCTTTAGT
* * * * * * * * *
14995121 CTAAGCTATTTTGTCGAATT-GGACCTTTATAAAAGCTTTTTATAGATCTAAACTATTTT-ATCA
1 C-GAGCTGTTTTGTCGAATTAGG-CCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCA
* *
14995184 AGTTGAGTCTGAGCTCTTT-GAT
64 AGCTGAGCCTGAGCTCTTTAG-T
* * * *** * *
14995206 CGAGCTGTTTTGTTGAATTTGGCCTTTATGAAGGTATTTTGTAGATTTGAGCTATTTTAAAT-GA
1 CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTT-AATCAA
* *
14995270 GCTGAGTCC-AAGCTCTTAAGT
65 GCTGAG-CCTGAGCTCTTTAGT
* * * * * * * * *
14995291 CGAGTTGTTTTGTCAAATTAGGCATTTATGAATGCATTTTTTAGAACCAAACTCTTTTAGTGAAG
1 CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCAAG
* *
14995356 TTGAGTCC-GAGCTCTTTAGC
66 CTGAG-CCTGAGCTCTTTAGT
* * * * *
14995376 CGAGCTGTTTTGTCGAATTAAGCATTTATAAAGGCATTTTGTAGATCCAAGGTCTTTTGGA-CGA
1 CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTT-AATC-A
* * *
14995440 A-CTGTGTCC-AAGCTCTTTGGT
64 AGCTGAG-CCTGAGCTCTTTAGT
* * * * * *
14995461 TGAGCTATTTTATC-AAGTTGGGCCTTCATGAAGGCATTTTGTAGATCCGAGCTCTTTT
1 CGAGCTGTTTTGTCGAA-TTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTT
14995519 GGTTGAGCTG
Statistics
Matches: 562, Mismatches: 153, Indels: 43
0.74 0.20 0.06
Matches are distributed among these distances:
83 1 0.00
84 90 0.16
85 461 0.82
86 7 0.01
87 3 0.01
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.41
Consensus pattern (85 bp):
CGAGCTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTAATCAAG
CTGAGCCTGAGCTCTTTAGT
Found at i:14995065 original size:170 final size:171
Alignment explanation
Indices: 14994784--14995518 Score: 544
Period size: 170 Copynumber: 4.3 Consensus size: 171
14994774 TTTTTGACCT
* * *
14994784 AGTTGTTTTGTTGAATTAGGCCTTTATGAAAGCATTTTATAGAT-TTGAGCTCTTTTAGTCAAGC
1 AGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATAGATCCT-AGCTCTTTTAGTCAAGC
* * * ** * * *
14994848 TGAGT-TCGAGCTCTTTTA-CCAAACTATTTTATCTTATTAGGCCTTTATGAAGGCATTTTGTAT
65 TGAGTCT-GAGCTC-TTTAGCCAAGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAG
* * * *
14994911 ATCTAAGCTCTTTT-AATCAAACTGAG-CCTGAGCTCTTTGGTTG
128 ATCCAAGCTCTTTTAAATCGAACTGAGTCC-AAGCTCTTTAGTTG
* * * * *
14994954 AGTTGTTTTCTCGAATTAGGCTTTTATGAAGGTATTTTGTAGATCCTAGCTCTTTTAGTTAAGCT
1 AGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATAGATCCTAGCTCTTTTAGTCAAGCT
* * * **
14995019 GAGTCTGAGCTTTTTAGTCAAGCTGTTATGTCGAATTAGACCTTTATAAAGATATTTTGTAGATC
66 GAGTCTGAGCTCTTTAGCCAAGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAGATC
* ** ** ** * * * * *
14995084 CGATATCTTTT-GGTTTAGCTGAGTTCAAGTTCTTTAGCTA
131 CAAGCTCTTTTAAATCGAACTGAGTCCAAGCTCTTTAGTTG
* * * * * * *
14995124 AGCTATTTTGTCGAATT-GGACCTTTATAAAAGCTTTTTATAGAT-CTAAACTATTTTA-TCAAG
1 AGTTGTTTTGTCGAATTAGG-CCTTTATGAAGGCATTTTATAGATCCT-AGCTCTTTTAGTCAAG
* * * * * * * *
14995186 TTGAGTCTGAGCTCTTT-GATCGAGCTGTTTTGTTGAATTTGGCCTTTATGAAGGTATTTTGTAG
64 CTGAGTCTGAGCTCTTTAG-CCAAGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAG
*** * * * *
14995250 ATTTGAGCTATTTTAAAT-GAGCTGAGTCCAAGCTCTTAAGTCG
128 ATCCAAGCTCTTTTAAATCGAACTGAGTCCAAGCTCTTTAGTTG
* * * * * * * * *
14995293 AGTTGTTTTGTCAAATTAGGCATTTATGAATGCATTTTTTAGAACCAAACTCTTTTAGTGAAGTT
1 AGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATAGATCCTAGCTCTTTTAGTCAAGCT
* * *
14995358 GAGTCCGAGCTCTTTAGCCGAGCTGTTTTGTCGAATTA-AGCATTTATAAAGGCATTTTGTAGAT
66 GAGTCTGAGCTCTTTAGCCAAGCTGTTTTGTCGAATTAGA-CCTTTATAAAGGCATTTTGTAGAT
* ** * *
14995422 CCAAGGTCTTTTGGA-CGAACTGTGTCCAAGCTCTTTGGTTG
130 CCAAGCTCTTTTAAATCGAACTGAGTCCAAGCTCTTTAGTTG
* * * * * * *
14995463 AGCTATTTTATC-AAGTTGGGCCTTCATGAAGGCATTTTGTAGATCCGAGCTCTTTT
1 AGTTGTTTTGTCGAA-TTAGGCCTTTATGAAGGCATTTTATAGATCCTAGCTCTTTT
14995519 GGTTGAGCTG
Statistics
Matches: 436, Mismatches: 114, Indels: 30
0.75 0.20 0.05
Matches are distributed among these distances:
168 1 0.00
169 135 0.31
170 296 0.68
171 4 0.01
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.41
Consensus pattern (171 bp):
AGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATAGATCCTAGCTCTTTTAGTCAAGCT
GAGTCTGAGCTCTTTAGCCAAGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAGATC
CAAGCTCTTTTAAATCGAACTGAGTCCAAGCTCTTTAGTTG
Found at i:14995132 original size:255 final size:253
Alignment explanation
Indices: 14994683--14995251 Score: 592
Period size: 255 Copynumber: 2.2 Consensus size: 253
14994673 CAAGGTAAGC
* * * *
14994683 CCTGAGCTTTTTGACCGAGCTATTTTGTCGAATTGAGCTTTTAT-AAAGTATTTTGTAGATCTAA
1 CCTGAGCTCTTTGATCGAGCTGTTTTGTCGAATTG-GCTTTTATGAAGGTATTTTGTAGATCTAA
* * * * * *
14994747 GGTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGACCTAGTTGTTTTGTTGAATTAGGCCTTTATG
65 GCTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGACCAAGCTGTTATGTCGAATTAGACCTTTATG
** * *
14994812 AAAGCATTTTATAGATTTGAGCTCTTTTAGTCAAGCTGAGTTCGAGCTCTTTTACCAAACTATTT
130 AAAGCATTTTATAGATCCGAGATCTTTTAGTCAAGCTGAGTTCAAGCTCTTTTACCAAACTATTT
** * * * * * *
14994877 TATCTTATTAGG-CCTTTATGAAGGCATTTTGTATATCTAAGCTCTTTTAATCAAACTGAG
195 TATCGAATT-GGACCTTTATAAAAGCATTTTATAGATCTAAACTATTTT-ATCAAACTGAG
* * * *
14994937 CCTGAGCTCTTTGGTTGAGTTGTTTTCTCGAATTAGGCTTTTATGAAGGTATTTTGTAGATCCT-
1 CCTGAGCTCTTTGATCGAGCTGTTTTGTCGAATT-GGCTTTTATGAAGGTATTTTGTAGAT-CTA
** * * *
14995001 AGCTCTTTTAGTTAAGCTGAGTCTGAGCTTTTT-AGTCAAGCTGTTATGTCGAATTAGACCTTTA
64 AGCTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGA-CCAAGCTGTTATGTCGAATTAGACCTTTA
* * * * ** * * *
14995065 T-AAAGATATTTTGTAGATCCGATATCTTTTGGTTTAGCTGAGTTCAAGTTC-TTTAGCTAAGCT
128 TGAAAG-CATTTTATAGATCCGAGATCTTTTAGTCAAGCTGAGTTCAAGCTCTTTTA-CCAAACT
* * **
14995128 ATTTTGTCGAATTGGACCTTTATAAAAGCTTTTTATAGATCTAAACTATTTTATCAAGTTGAG
191 ATTTTATCGAATTGGACCTTTATAAAAGCATTTTATAGATCTAAACTATTTTATCAAACTGAG
* * *
14995191 TCTGAGCTCTTTGATCGAGCTGTTTTGTTGAATTTGGCCTTTATGAAGGTATTTTGTAGAT
1 CCTGAGCTCTTTGATCGAGCTGTTTTGTCGAA-TTGGCTTTTATGAAGGTATTTTGTAGAT
14995252 TTGAGCTATT
Statistics
Matches: 256, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
254 106 0.41
255 148 0.58
256 2 0.01
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.43
Consensus pattern (253 bp):
CCTGAGCTCTTTGATCGAGCTGTTTTGTCGAATTGGCTTTTATGAAGGTATTTTGTAGATCTAAG
CTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGACCAAGCTGTTATGTCGAATTAGACCTTTATGA
AAGCATTTTATAGATCCGAGATCTTTTAGTCAAGCTGAGTTCAAGCTCTTTTACCAAACTATTTT
ATCGAATTGGACCTTTATAAAAGCATTTTATAGATCTAAACTATTTTATCAAACTGAG
Found at i:14995523 original size:61 final size:61
Alignment explanation
Indices: 14995450--14995593 Score: 184
Period size: 61 Copynumber: 2.4 Consensus size: 61
14995440 ACTGTGTCCA
* * * * *
14995450 AGCTC-TTTGGTTGAGCT-ATTTTATCAAGTTGGGCCTTCATGAAGGCATTTTGTAGATCCG
1 AGCTCTTTTGGTTGAGCTGA-GTTATCAAATTGGACCTTCATGAAGGCATTTAGTAAATCCG
* * *
14995510 AGCTCTTTTGGTTGAGCTGAGTTGTCAAATTGGACTTTCATGAAGGCATTTAGTAAATTCG
1 AGCTCTTTTGGTTGAGCTGAGTTATCAAATTGGACCTTCATGAAGGCATTTAGTAAATCCG
*
14995571 AGCTCTTTTGGTTGCGCTGAGTT
1 AGCTCTTTTGGTTGAGCTGAGTT
14995594 TGAACTTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
60 5 0.07
61 67 0.92
62 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (61 bp):
AGCTCTTTTGGTTGAGCTGAGTTATCAAATTGGACCTTCATGAAGGCATTTAGTAAATCCG
Found at i:14997202 original size:3 final size:3
Alignment explanation
Indices: 14997196--14997221 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14997186 ACTGCTGCTG
14997196 CTA CTA CTA CTA CTA CTA CTA CTA CT
1 CTA CTA CTA CTA CTA CTA CTA CTA CT
14997222 GATCTAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
CTA
Found at i:14997616 original size:13 final size:13
Alignment explanation
Indices: 14997598--14997623 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14997588 TATAAAATTA
14997598 AAATTTTATAAAT
1 AAATTTTATAAAT
14997611 AAATTTTATAAAT
1 AAATTTTATAAAT
14997624 TTTGAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTTTATAAAT
Found at i:14997996 original size:17 final size:18
Alignment explanation
Indices: 14997976--14998014 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14997966 TTTCAAAACA
14997976 AAAAGAAGAA-AAAAAAT
1 AAAAGAAGAATAAAAAAT
* *
14997993 AAAATAATAATAAAAAAT
1 AAAAGAAGAATAAAAAAT
14998011 AAAA
1 AAAA
14998015 ATTTGGGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (18 bp):
AAAAGAAGAATAAAAAAT
Found at i:14997996 original size:18 final size:19
Alignment explanation
Indices: 14997970--14998015 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
14997960 ATTTTTTTTC
*
14997970 AAAACAAAAAGAAGAA-AA
1 AAAATAAAAAGAAGAATAA
* *
14997988 AAAAT-AAAATAATAATAA
1 AAAATAAAAAGAAGAATAA
14998006 AAAATAAAAA
1 AAAATAAAAA
14998016 TTTGGGTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
17 8 0.35
18 11 0.48
19 4 0.17
ACGTcount: A:0.83, C:0.02, G:0.04, T:0.11
Consensus pattern (19 bp):
AAAATAAAAAGAAGAATAA
Found at i:14998317 original size:50 final size:52
Alignment explanation
Indices: 14998244--14998368 Score: 130
Period size: 50 Copynumber: 2.4 Consensus size: 52
14998234 AAATTTCAAA
* *
14998244 AAAAAAAAGAAAATATTTTTAAAT-TGACCCAAATGGTGAAAAATTTAGAGAT
1 AAAAAAAAGAAAATATTTCTAAATATG-CCCAAATGGTAAAAAATTTAGAGAT
* * * *
14998296 AAAAAAAAG-GAA-ATTTCTAAATATGTCCAAATGTTAAAAAATTTAGAAATT
1 AAAAAAAAGAAAATATTTCTAAATATGCCCAAATGGTAAAAAATTTAGAGA-T
* **
14998347 CAAAAGGAGAAAATATTTCTAA
1 AAAAAAAAGAAAATATTTCTAA
14998369 TTTAGCTCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
50 29 0.49
51 11 0.19
52 11 0.19
53 8 0.14
ACGTcount: A:0.54, C:0.06, G:0.12, T:0.27
Consensus pattern (52 bp):
AAAAAAAAGAAAATATTTCTAAATATGCCCAAATGGTAAAAAATTTAGAGAT
Found at i:15002433 original size:37 final size:37
Alignment explanation
Indices: 15002383--15002460 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
15002373 AATTTCTCTA
*
15002383 ATTTGAGGAAAAATAGGACGGATGGGGTACAAGAAAG
1 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
15002420 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
1 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
15002457 ATTT
1 ATTT
15002461 TAATATAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.44, C:0.05, G:0.32, T:0.19
Consensus pattern (37 bp):
ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
Found at i:15005781 original size:25 final size:25
Alignment explanation
Indices: 15005748--15005802 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
15005738 CCAATTTGGT
*
15005748 TTTTATTTTGTATCTTTATTTT-TA
1 TTTTATTTTTTATCTTTATTTTGTA
* *
15005772 TTTTATTTTTTTTCTTTCTTTTGTA
1 TTTTATTTTTTATCTTTATTTTGTA
15005797 TTTTAT
1 TTTTAT
15005803 GTATTTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 19 0.70
25 8 0.30
ACGTcount: A:0.13, C:0.05, G:0.04, T:0.78
Consensus pattern (25 bp):
TTTTATTTTTTATCTTTATTTTGTA
Found at i:15005915 original size:20 final size:20
Alignment explanation
Indices: 15005889--15005994 Score: 83
Period size: 20 Copynumber: 5.2 Consensus size: 20
15005879 TATATATGTA
15005889 TTTTATTTATCTAGTTATAT
1 TTTTATTTATCTAGTTATAT
* * * *
15005909 ATTTATTATTAT-AATTTATTTT
1 TTTTA-T-TTATCTAGTTA-TAT
* *
15005931 TTTTATTTATCTTGTAATAT
1 TTTTATTTATCTAGTTATAT
15005951 TTTTATTTATCTTA-TTATTAT
1 TTTTATTTATC-TAGTTA-TAT
*
15005972 TTTTAATTATCT-GTTATAT
1 TTTTATTTATCTAGTTATAT
15005991 TTTT
1 TTTT
15005995 TTTGTTTATC
Statistics
Matches: 66, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
19 7 0.11
20 27 0.41
21 22 0.33
22 10 0.15
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTATTTATCTAGTTATAT
Found at i:15005938 original size:13 final size:13
Alignment explanation
Indices: 15005795--15005981 Score: 67
Period size: 13 Copynumber: 14.5 Consensus size: 13
15005785 CTTTCTTTTG
15005795 TATT-TTATGTATT
1 TATTATTAT-TATT
15005808 TATTA-T-TTATT
1 TATTATTATTATT
* *
15005819 TATTATTACTATG
1 TATTATTATTATT
* *
15005832 TATTAATA-TATG
1 TATTATTATTATT
15005844 TA-TATCT-TTATT
1 TATTAT-TATTATT
*
15005856 TATTATT-TTTTT
1 TATTATTATTATT
* * *
15005868 CTGTTAATATCTATA
1 -TATTATTAT-TATT
15005883 TATGTATT-TTATT
1 TAT-TATTATTATT
15005896 TATCTAGTTATATATT
1 TAT-TA-TTAT-TATT
*
15005912 TATTATTATAATT
1 TATTATTATTATT
* *
15005925 TATTTTTTTTATT
1 TATTATTATTATT
*
15005938 TATCT-TGTAATATT
1 TAT-TAT-TATTATT
15005952 T-TTA-T-TTATCT
1 TATTATTATTAT-T
15005963 TATTATTATT-TT
1 TATTATTATTATT
15005975 TAATTAT
1 T-ATTAT
15005982 CTGTTATATT
Statistics
Matches: 132, Mismatches: 21, Indels: 42
0.68 0.11 0.22
Matches are distributed among these distances:
10 3 0.02
11 14 0.11
12 25 0.19
13 56 0.42
14 19 0.14
15 8 0.06
16 7 0.05
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:15005941 original size:42 final size:42
Alignment explanation
Indices: 15005889--15005996 Score: 116
Period size: 41 Copynumber: 2.6 Consensus size: 42
15005879 TATATATGTA
*
15005889 TTTTATTTATCTAGTTATATATTTATTA-TTATAAT-TTATTTT
1 TTTTATTTATCT-GTTATATATTT-TTATTTATAATATTATTAT
**
15005931 TTTTATTTATCT-TGTA-ATATTTTTATTTATCTTATTATTAT
1 TTTTATTTATCTGT-TATATATTTTTATTTATAATATTATTAT
* *
15005972 TTTTAATTATCTGTTATATTTTTTT
1 TTTTATTTATCTGTTATATATTTTT
15005997 TGTTTATCTG
Statistics
Matches: 56, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
39 3 0.05
40 12 0.21
41 21 0.38
42 20 0.36
ACGTcount: A:0.25, C:0.04, G:0.03, T:0.69
Consensus pattern (42 bp):
TTTTATTTATCTGTTATATATTTTTATTTATAATATTATTAT
Found at i:15006013 original size:20 final size:20
Alignment explanation
Indices: 15005990--15006035 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
15005980 ATCTGTTATA
**
15005990 TTTTTTTT-GTTTATCTGAT
1 TTTTTTTTCGTTTATCAAAT
15006009 TTTTTTTTCGTTTATCAAAT
1 TTTTTTTTCGTTTATCAAAT
15006029 TTTTTTT
1 TTTTTTT
15006036 CTTTTTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.74
Consensus pattern (20 bp):
TTTTTTTTCGTTTATCAAAT
Found at i:15006014 original size:21 final size:21
Alignment explanation
Indices: 15005950--15006016 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
15005940 TCTTGTAATA
* * *
15005950 TTTTTATTTATCTTATTATTA
1 TTTTTATTTATCTGATTTTTT
*
15005971 TTTTTAATTATCTG-TTATATTT
1 TTTTTATTTATCTGATT-T-TTT
*
15005993 TTTTTGTTTATCTGATTTTTT
1 TTTTTATTTATCTGATTTTTT
15006014 TTT
1 TTT
15006017 CGTTTATCAA
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.05
21 18 0.49
22 15 0.41
23 2 0.05
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.73
Consensus pattern (21 bp):
TTTTTATTTATCTGATTTTTT
Found at i:15006036 original size:19 final size:20
Alignment explanation
Indices: 15005989--15006036 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
15005979 TATCTGTTAT
*
15005989 ATTTTTTTT-GTTTATCTGA
1 ATTTTTTTTCGTTTATCTAA
*
15006008 TTTTTTTTTCGTTTATC-AA
1 ATTTTTTTTCGTTTATCTAA
15006027 ATTTTTTTTC
1 ATTTTTTTTC
15006037 TTTTTTTTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.15, C:0.08, G:0.06, T:0.71
Consensus pattern (20 bp):
ATTTTTTTTCGTTTATCTAA
Found at i:15006944 original size:5 final size:5
Alignment explanation
Indices: 15006934--15007016 Score: 52
Period size: 5 Copynumber: 16.6 Consensus size: 5
15006924 TTCTTTCATC
*
15006934 TTTAT TTTATT TTTAT TTTACT TTT-C TTTA- TTTA- TTTA- TTTATT
1 TTTAT TTTA-T TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT TTTA-T
*
15006978 TTTAT TTCTCATT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TT-T-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
15007017 CTTTAAATAA
Statistics
Matches: 65, Mismatches: 3, Indels: 20
0.74 0.03 0.23
Matches are distributed among these distances:
3 3 0.05
4 15 0.23
5 27 0.42
6 15 0.23
7 2 0.03
8 3 0.05
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:15007095 original size:58 final size:58
Alignment explanation
Indices: 15007012--15007419 Score: 483
Period size: 59 Copynumber: 7.1 Consensus size: 58
15007002 TTATTATTTT
* **
15007012 ATTTT-CTTT-AAATAAAA-TCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCA
1 ATTTTCCTTTAAAATAAAATTTC-AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCA
*
15007068 ATTTTCCTTTAAAATAAAATTTCAAAAAAAGTTTTTTTGAAGAAAAGTTGAAAGTATCA
1 ATTTTCCTTTAAAATAAAATTTCAAAAAAA-TATTTTTGAAGAAAAGTTGAAAGTATCA
* *
15007127 ATTTTCCTTAAAAATAAATTTTCAAAAAAA-AGTTTTTGAAGAAAAGTTGAAAGTATCA
1 ATTTTCCTTTAAAATAAAATTTCAAAAAAATA-TTTTTGAAGAAAAGTTGAAAGTATCA
* * *
15007185 ATTTTCCTTGAAAATCAAAGTTTCCAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCA
1 ATTTTCCTTTAAAAT-AAAATTTCAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCA
* * ***
15007244 ATTTTCTTTTAAAATAACATTTCAAAAAAGGGTTTTTG-AGAAAAGTTGAAAGTATCA
1 ATTTTCCTTTAAAATAAAATTTCAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCA
* * **
15007301 ATTTTTCTTAAAAAT-AAATTTC-AAAAAAGGTTTTT-AAGGAAAAGTTGAAAGTATCA
1 ATTTTCCTTTAAAATAAAATTTCAAAAAAATATTTTTGAA-GAAAAGTTGAAAGTATCA
* ** * * *
15007357 ATTTTTCTCGAAATTAAAATTTCAAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCA
1 ATTTTCCTTTAAAATAAAATTTCAAAAAAATATTTTTGA-AGAAAAGTTGAAAGTATCA
15007415 ATTTT
1 ATTTT
15007420 TCCTGCACAA
Statistics
Matches: 310, Mismatches: 30, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
55 13 0.04
56 41 0.13
57 42 0.14
58 106 0.34
59 107 0.35
60 1 0.00
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (58 bp):
ATTTTCCTTTAAAATAAAATTTCAAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCA
Found at i:15007171 original size:117 final size:115
Alignment explanation
Indices: 15007021--15007419 Score: 470
Period size: 117 Copynumber: 3.4 Consensus size: 115
15007011 TATTTTCTTT
* * * ** *
15007021 AAATAAAATCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTTAAAATAAA
1 AAATAAATTTCAAAAAAAA-GTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
*
15007086 ATTTCAAAAAAAGTTTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAA
65 ATTTC-AAAAAAGTATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
15007138 AAATAAATTTTCAAAAAAAAGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAA
1 AAATAAA-TTTCAAAAAAAAGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AA
* * *
15007203 AGTTTCCAAAAAA-TATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCTTTTA
64 AATTT-CAAAAAAGTATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAA
** *
15007255 AAATAACATTTCAAAAAAGGGTTTTTG-AGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AA
1 AAATAA-ATTTCAAAAAAAAGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA
* * **
15007318 ATTTCAAAAAAG-GTTTTT-AAGGAAAAGTTGAAAGTATCAATTTTTCTCGA
65 ATTTCAAAAAAGTATTTTTGAA-GAAAAGTTGAAAGTATCAATTTTCCTTAA
* * *
15007368 AATTAAAATTTCAAAAGAATA-TTTTT-AGGGAAAAGTTGAAAGTATCAATTTT
1 AAAT-AAATTTCAAAA-AAAAGTTTTTGA-AGAAAAGTTGAAAGTATCAATTTT
15007420 TCCTGCACAA
Statistics
Matches: 248, Mismatches: 24, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
112 2 0.01
113 54 0.22
114 32 0.13
116 32 0.13
117 104 0.42
118 23 0.09
119 1 0.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (115 bp):
AAATAAATTTCAAAAAAAAGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA
TTTCAAAAAAGTATTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:15007247 original size:27 final size:27
Alignment explanation
Indices: 15007159--15007248 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 27
15007149 CAAAAAAAAG
15007159 TTTTTGAAGAAAAGTTGAAAGTATCAA
1 TTTTTGAAGAAAAGTTGAAAGTATCAA
* * **
15007186 TTTTCCTTGAAAATCAAAGTTTCCAAAAAAT--A
1 -TTT--TTGAAGA--AAAG-TT-GAAAGTATCAA
15007218 TTTTTGAAGAAAAGTTGAAAGTATCAA
1 TTTTTGAAGAAAAGTTGAAAGTATCAA
15007245 TTTT
1 TTTT
15007249 CTTTTAAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 17
0.65 0.11 0.24
Matches are distributed among these distances:
25 5 0.11
26 2 0.04
27 9 0.20
28 3 0.07
29 6 0.13
30 6 0.13
31 3 0.07
32 5 0.11
33 2 0.04
34 5 0.11
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (27 bp):
TTTTTGAAGAAAAGTTGAAAGTATCAA
Found at i:15007420 original size:58 final size:56
Alignment explanation
Indices: 15007034--15007421 Score: 447
Period size: 58 Copynumber: 6.7 Consensus size: 56
15007024 TAAAATCCAA
* * *
15007034 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTTAAAATAAAATTTC
1 AAAAAATATTTTT-GAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
* * *
15007091 AAAAAAAGTTTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 -AAAAAA-TATTTTTG-AGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
* * * *
15007150 AAAAAAAAGTTTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAATA-TTTTTG-AGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTT-C
* *
15007210 AAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAA-TTTTCTTTTAAAATAACATTTC
1 AAAAAATATTTTTG-AGAAAAGTTGAAAGTATCAATTTTTC-TTAAAAATAAAATTTC
**
15007267 AAAAAAGGGTTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAATTTC
1 AAAAAA-TATTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
** * ** *
15007323 AAAAAAGGTTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAATTTC
1 AAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
*
15007380 AAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTC
1 AAAA-AATATTTTT-GAGAAAAGTTGAAAGTATCAATTTTTC
15007422 CTGCACAAGA
Statistics
Matches: 293, Mismatches: 25, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
55 8 0.03
56 42 0.14
57 45 0.15
58 105 0.36
59 85 0.29
60 8 0.03
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.36
Consensus pattern (56 bp):
AAAAAATATTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
Found at i:15007472 original size:13 final size:13
Alignment explanation
Indices: 15007456--15007480 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15007446 CTTCCTCTTT
15007456 TTTTTATTTTTTA
1 TTTTTATTTTTTA
15007469 TTTTTATTTTTT
1 TTTTTATTTTTT
15007481 TCTTTAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:15012668 original size:43 final size:42
Alignment explanation
Indices: 15012620--15012725 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
15012610 GCCTTTAAAC
* *
15012620 TCAAATGAGAAGCTTTGAATTTTTGGATGTGAATCTCCAAAAT
1 TCAAATGAGAAACTTTGAATTTTTGGATATGAAT-TCCAAAAT
* **
15012663 TCAAATGAAAAACTTT-AGATTTTTGGATATGAATTCCAAGTT
1 TCAAATGAGAAACTTTGA-ATTTTTGGATATGAATTCCAAAAT
*
15012705 TGCCAAATGAGAACCTTTGAA
1 T--CAAATGAGAAACTTTGAA
15012726 AAGCCTTGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
42 8 0.15
43 29 0.56
44 14 0.27
45 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (42 bp):
TCAAATGAGAAACTTTGAATTTTTGGATATGAATTCCAAAAT
Found at i:15013148 original size:41 final size:40
Alignment explanation
Indices: 15012994--15013185 Score: 244
Period size: 41 Copynumber: 4.7 Consensus size: 40
15012984 ATTGTCAAGA
* *
15012994 AGCAATTTACTTTTCAAAGTTC-TGTTACCTCTGTTTAGAGG
1 AGCAATTTAC-TTTCAAAG-TCGTGGTGCCTCTGTTTAGAGG
* * * *
15013035 AGCAATTTACTTTCTCAAAGTCGTGATACCTTTGTTTAAAGG
1 AGCAATTTAC-TT-TCAAAGTCGTGGTGCCTCTGTTTAGAGG
15013077 AGCAATTTA-TTCTCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTACTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGG
*
15013117 AGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGATG
1 AGCAATTTACTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGG
15013158 AGCAATTTACTTTCAAAAGTCGTGGTGC
1 AGCAATTTACTTTC-AAAGTCGTGGTGC
15013186 AATTTACTTT
Statistics
Matches: 139, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
40 38 0.27
41 70 0.50
42 31 0.22
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (40 bp):
AGCAATTTACTTTCAAAGTCGTGGTGCCTCTGTTTAGAGG
Found at i:15013193 original size:25 final size:25
Alignment explanation
Indices: 15013159--15013210 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
15013149 GTTTAGATGA
15013159 GCAATTTACTTTCAAAAGTCGTGGT
1 GCAATTTACTTTCAAAAGTCGTGGT
15013184 GCAATTTACTTTCAAAAGTCGTGGT
1 GCAATTTACTTTCAAAAGTCGTGGT
15013209 GC
1 GC
15013211 CTCTGTTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (25 bp):
GCAATTTACTTTCAAAAGTCGTGGT
Found at i:15013227 original size:66 final size:66
Alignment explanation
Indices: 15013118--15013251 Score: 234
Period size: 66 Copynumber: 2.0 Consensus size: 66
15013108 GTTTAGAGGA
*
15013118 GCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGATGAGCAATTTA-CTTTCAAAAGTCGTG
1 GCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTC-AAAGTCGTG
15013182 GT
65 GT
*
15013184 GCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGG
1 GCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCAAAGTCGTGG
15013249 T
66 T
15013250 GC
1 GC
15013252 CTCTGTTTAG
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
66 61 0.94
67 4 0.06
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (66 bp):
GCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATCTTTCAAAGTCGTGG
T
Found at i:15013243 original size:41 final size:41
Alignment explanation
Indices: 15013184--15013575 Score: 563
Period size: 41 Copynumber: 9.5 Consensus size: 41
15013174 AAGTCGTGGT
*
15013184 GCAATTTA-CTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGA
1 GCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGA
15013225 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
1 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
* *
15013266 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGA
1 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
* ** *
15013307 GCAATTTATTTTCCAAAGT-GTGGTGCCTCTACTTAGAGAA
1 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
* * *
15013347 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAAAGGA
1 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
**
15013388 GCAATTTACTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGGA
1 GCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
15013430 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
1 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
*
15013471 GCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
1 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
* * * *
15013512 GCAATTTATTTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGA
1 GCAATTTATTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGA
*
15013554 GCCATTTATGTTTCTCAAAGTC
1 GCAATTTAT-TTT-TCAAAGTC
15013576 ATTGAGCCTA
Statistics
Matches: 320, Mismatches: 25, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
40 36 0.11
41 200 0.62
42 74 0.23
43 9 0.03
44 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (41 bp):
GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
Found at i:15013277 original size:107 final size:106
Alignment explanation
Indices: 15013078--15013292 Score: 362
Period size: 107 Copynumber: 2.0 Consensus size: 106
15013068 GTTTAAAGGA
15013078 GCAATTTATTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
1 GCAATTTATTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
*
15013143 GCCTCTGTTTAGATGAGCAATTTACTTTCAAAAGTCGTGGT
66 GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
*
15013184 GCAATTTACTT-TCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAGTCGT
1 GCAATTTA-TTCTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTCAAAAGTCGT
*
15013247 GGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGT
63 GGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
15013291 GC
1 GC
15013293 CTCTGTTTAG
Statistics
Matches: 103, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
106 10 0.10
107 89 0.86
108 4 0.04
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (106 bp):
GCAATTTATTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
GCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
Found at i:15013309 original size:148 final size:147
Alignment explanation
Indices: 15013036--15013497 Score: 552
Period size: 148 Copynumber: 3.0 Consensus size: 147
15013026 GTTTAGAGGA
* *
15013036 GCAATTTACTTTCTCAAAGTCGTGATACCTTTGTTTAAAGGAGCAATTTATTCTCAAAGTCGTGG
1 GCAATTTACTTTCTAAAAGTCGTGATACCTCTGTTTAAAGGAGCAATTTATTCTCAAAGTCGTGG
*
15013101 TGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGATGAGCAATTT
66 TGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
15013166 ACTTTCAAAAGTCGTGGT
131 ACTTTCAAAAGT-GTGGT
* * * *
15013184 GCAATTTACTTTC-AAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTG
1 GCAATTTACTTTCTAAAAGTCGTGATACCTCTGTTTAAAGGAGCAATTTA-TTCTCAAAGTCGTG
*
15013248 GTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATT
65 GTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATT
* *
15013313 TATTTTCCAAAGTGTGGT
130 TACTTTCAAAAGTGTGGT
* * * * *
15013331 GCCTCTACTTAGAGAAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTA
1 G---C-AATT----TA-C--TTT-C--T-AAAAGTCGTGATACCTCTGTTTAAAGGAGCAATTTA
* *
15013396 CTTTCCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTC
51 --TTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTCAAAAGTCGTGGTGCCTC
15013460 TGTTTAGAGGAGCAATTTACTTTTC-AAAGTCGTGGT
113 TGTTTAGAGGAGCAATTTAC-TTTCAAAAGT-GTGGT
15013496 GC
1 GC
15013498 CTCTGTTTAG
Statistics
Matches: 275, Mismatches: 18, Indels: 28
0.86 0.06 0.09
Matches are distributed among these distances:
147 37 0.13
148 100 0.36
150 1 0.00
151 3 0.01
155 1 0.00
156 1 0.00
158 3 0.01
159 1 0.00
162 1 0.00
163 34 0.12
164 79 0.29
165 14 0.05
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (147 bp):
GCAATTTACTTTCTAAAAGTCGTGATACCTCTGTTTAAAGGAGCAATTTATTCTCAAAGTCGTGG
TGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTT
ACTTTCAAAAGTGTGGT
Found at i:15013324 original size:82 final size:82
Alignment explanation
Indices: 15013184--15013575 Score: 590
Period size: 83 Copynumber: 4.7 Consensus size: 82
15013174 AAGTCGTGGT
* *
15013184 GCAATTTACTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGG
1 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGG
15013249 TGCCTCTGTTTAGAGGA
66 TGCCTCTGTTTAGAGGA
15013266 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGT-GTGG
1 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGG
** *
15013330 TGCCTCTACTTAGAGAA
66 TGCCTCTGTTTAGAGGA
* *
15013347 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTACTTTCCCAAAGTCGTG
1 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTG
15013412 GTGCCTCTGTTTAGAGGA
65 GTGCCTCTGTTTAGAGGA
* *
15013430 GCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGTG
1 GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTG
15013494 GTGCCTCTGTTTAGAGGA
65 GTGCCTCTGTTTAGAGGA
* * * * * *
15013512 GCAATTTATTTTTCCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCATTTATGTTTCTCAAAGTC
1 GCAATTTA-CTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT-TTTC-CAAAGTC
15013576 ATTGAGCCTA
Statistics
Matches: 284, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
81 66 0.23
82 105 0.37
83 106 0.37
85 7 0.02
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (82 bp):
GCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGG
TGCCTCTGTTTAGAGGA
Found at i:15013803 original size:12 final size:12
Alignment explanation
Indices: 15013788--15013829 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
15013778 CCAATTTGGT
15013788 TTTTATTTTGTA
1 TTTTATTTTGTA
*
15013800 TTTTATTTT-TT
1 TTTTATTTTGTA
*
15013811 TCTTTCTTTTGTA
1 T-TTTATTTTGTA
15013824 TTTTAT
1 TTTTAT
15013830 GTATTTATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 20 0.83
13 2 0.08
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (12 bp):
TTTTATTTTGTA
Found at i:15013904 original size:29 final size:33
Alignment explanation
Indices: 15013864--15013952 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 33
15013854 CTATGTATTA
* * *
15013864 ATATATGTATATCTTTATTTT-TTT-TCTA-TT
1 ATATATCTATATATGTATTTTATTTATCTAGTT
15013894 A-ATATCTATATATGTATTTTATTTATCTAGTT
1 ATATATCTATATATGTATTTTATTTATCTAGTT
*
15013926 ATATATTTAT-TAT-TATAATTTATTTAT
1 ATATATCTATATATGTAT--TTTATTTAT
15013953 TATTTTTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
29 16 0.33
30 4 0.08
31 7 0.14
32 6 0.12
33 16 0.33
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (33 bp):
ATATATCTATATATGTATTTTATTTATCTAGTT
Found at i:15013952 original size:14 final size:15
Alignment explanation
Indices: 15013913--15013967 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 15
15013903 ATATGTATTT
*
15013913 TATTTATCTAGTTATA
1 TATTTATTTA-TTATA
15013929 TATTTA-TTATTATA
1 TATTTATTTATTATA
*
15013943 -ATTTATTTATTATT
1 TATTTATTTATTATA
*
15013957 TTTTTATTTAT
1 TATTTATTTAT
15013968 CTTGTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 5 0.15
14 12 0.35
15 11 0.32
16 6 0.18
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (15 bp):
TATTTATTTATTATA
Found at i:15014024 original size:21 final size:20
Alignment explanation
Indices: 15013873--15014024 Score: 81
Period size: 21 Copynumber: 6.8 Consensus size: 20
15013863 AATATATGTA
*
15013873 TATCTTTATTTTTTTTCTATT
1 TATCTTTATATTTTTT-TATT
* *
15013894 AATATCTATATATGTATTTTATT
1 --TATCTTTATAT-TTTTTTATT
*
15013917 TATCTAGTTATATATTTATTATT
1 TATCT--TTATAT-TTTTTTATT
*
15013940 ATAATTTATTTATTATTTTTTTATT
1 -T-A--TCTTTA-TATTTTTTTATT
* *
15013965 TATCTTGTAAAATTTTTTATT
1 TATCTT-TATATTTTTTTATT
*
15013986 TATC-TTATTATTATTTTTAAT
1 TATCTTTA-TATT-TTTTTATT
15014007 TATCTGTTATATTTTTTT
1 TATCT-TTATATTTTTTT
15014025 TCTTTTTTCG
Statistics
Matches: 101, Mismatches: 15, Indels: 28
0.70 0.10 0.19
Matches are distributed among these distances:
19 2 0.02
20 3 0.03
21 38 0.38
22 6 0.06
23 29 0.29
24 6 0.06
25 12 0.12
26 3 0.03
27 2 0.02
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (20 bp):
TATCTTTATATTTTTTTATT
Found at i:15014072 original size:19 final size:20
Alignment explanation
Indices: 15014027--15014071 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
15014017 ATTTTTTTTC
*
15014027 TTTTTTCGTTTATCTGATTT
1 TTTTTTCGTTTATCAGATTT
15014047 TTTTTTCGTTTATCAGATTT
1 TTTTTTCGTTTATCAGATTT
15014067 TTTTT
1 TTTTT
15014072 CTTATTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.11, C:0.09, G:0.09, T:0.71
Consensus pattern (20 bp):
TTTTTTCGTTTATCAGATTT
Found at i:15014968 original size:5 final size:5
Alignment explanation
Indices: 15014958--15015042 Score: 60
Period size: 5 Copynumber: 17.8 Consensus size: 5
15014948 TTCTTTCATC
*
15014958 TTTAT TTTATT TTTAT TTTAC TTT-T TTTA- TTTA- TTTA- TTT-T TTTAT
1 TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
*
15015004 TTCTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT-T TTTA
1 TT-T-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA
15015043 AATAAAATCA
Statistics
Matches: 66, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
3 3 0.05
4 21 0.32
5 30 0.45
6 7 0.11
7 2 0.03
8 3 0.05
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:15015000 original size:16 final size:17
Alignment explanation
Indices: 15014958--15015040 Score: 73
Period size: 17 Copynumber: 4.6 Consensus size: 17
15014948 TTCTTTCATC
*
15014958 TTTATTTTATT-TTTAT
1 TTTATTTTTTTATTTAT
15014974 TTTACTTTTTTTATTTA-
1 TTTA-TTTTTTTATTTAT
15014991 TTTATTTTTTTATTTCTCACT
1 TTTATTTTTTTA-TT-T-A-T
15015012 TTTATTTTGTTT-TATTAT
1 TTTATTTT-TTTAT-TTAT
15015030 TTTATTTTTTT
1 TTTATTTTTTT
15015041 TAAATAAAAT
Statistics
Matches: 57, Mismatches: 1, Indels: 17
0.76 0.01 0.23
Matches are distributed among these distances:
16 12 0.21
17 15 0.26
18 14 0.25
19 2 0.04
20 2 0.04
21 9 0.16
22 3 0.05
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (17 bp):
TTTATTTTTTTATTTAT
Found at i:15015002 original size:12 final size:11
Alignment explanation
Indices: 15014962--15015039 Score: 57
Period size: 13 Copynumber: 6.4 Consensus size: 11
15014952 TTCATCTTTA
*
15014962 TTTTATTTTTA
1 TTTTATTTTTT
15014973 TTTTACTTTTTT
1 TTTTA-TTTTTT
15014985 TATTTATTTATTT
1 T-TTTATTT-TTT
**
15014998 TTTTATTTCTCAC
1 TTTTATTT-T-TT
15015011 TTTTATTTTGTT
1 TTTTATTTT-TT
15015023 TTATTATTTTATT
1 TT-TTATTTT-TT
15015036 TTTT
1 TTTT
15015040 TTAAATAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
11 5 0.09
12 22 0.41
13 27 0.50
ACGTcount: A:0.15, C:0.05, G:0.01, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTT
Found at i:15015040 original size:8 final size:8
Alignment explanation
Indices: 15014958--15015040 Score: 55
Period size: 8 Copynumber: 10.4 Consensus size: 8
15014948 TTCTTTCATC
15014958 TTTATTTT
1 TTTATTTT
*
15014966 ATTT-TTAT
1 -TTTATTTT
15014974 TTTACTTTT
1 TTTA-TTTT
*
15014983 TTTATTTA
1 TTTATTTT
15014991 TTTATTTT
1 TTTATTTT
15014999 TTTA-TTT
1 TTTATTTT
* *
15015006 CTCACTTTT
1 TTTA-TTTT
* *
15015015 ATT-TTGT
1 TTTATTTT
*
15015022 TTTATTAT
1 TTTATTTT
15015030 TTTATTTT
1 TTTATTTT
15015038 TTT
1 TTT
15015041 TAAATAAAAT
Statistics
Matches: 57, Mismatches: 12, Indels: 11
0.71 0.15 0.14
Matches are distributed among these distances:
7 13 0.23
8 30 0.53
9 14 0.25
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (8 bp):
TTTATTTT
Found at i:15015174 original size:58 final size:57
Alignment explanation
Indices: 15015054--15015620 Score: 640
Period size: 58 Copynumber: 9.7 Consensus size: 57
15015044 ATAAAATCAA
* * *
15015054 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCATAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
15015111 AAAAAAAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 -AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
15015170 AAAAAAACATTTTTGAAGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATCAAAATCTTC
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAAT-TTC
* *
15015230 AAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAAGTTTCC
1 --AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C
** * *
15015291 AAAAAATATTTTTGAAAAAAAGTT-AAAGTAACAATTTTCTTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** * *
15015347 AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAACATTTC
1 AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** * ** * *
15015405 AAAAAAGGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTTTTTGAAAATCAAAGTTTTC
1 AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-ATTTC
* *
15015465 AAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAAGTTTTC
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAA-ATTTC
** *
15015524 AAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTC
1 AAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
15015581 AAAAGAATATTTTT-AGGGAAAAGTTAAAAGTATCAATTTT
1 AAAA-AATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTT
15015621 TTCTGCACAA
Statistics
Matches: 449, Mismatches: 43, Indels: 34
0.85 0.08 0.06
Matches are distributed among these distances:
56 7 0.02
57 28 0.06
58 182 0.41
59 162 0.36
60 21 0.05
61 49 0.11
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:15015192 original size:117 final size:116
Alignment explanation
Indices: 15015053--15015620 Score: 666
Period size: 117 Copynumber: 4.8 Consensus size: 116
15015043 AATAAAATCA
** * *
15015053 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCATAAAAATAAAATTTCAAAAAAA
1 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTCAAAAAAA
*
15015118 GTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
66 -TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
15015170 AAAAAAACATTTTTGAAGAAAAGTTAAAAGTATCAATTTTCCTTGAAAATCAAAATCTTCAAAAA
1 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAAAT-TTC-AAAA
* *
15015235 AAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATCAAAGTTTC
63 AAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* * * *
15015290 CAAAAAATATTTTTGAAAAAAAGTT-AAAGTAACAA-TTTTCTTTAAAAATAAAATTTCAAAAAA
1 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTC-TTGAAAATAAAATTTCAAAAAA
*** * *
15015353 GGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAACATTTC
65 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*** * *
15015405 AAAAAAGGGTTTTTG-AGAAAAAGTTGAAAGTATCAATTTTTTTTGAAAATCAAAGTTTTC-AAA
1 AAAAAAATATTTTTGAAG-AAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAA-ATTTCAAAA
* *
15015468 AAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATTAAAGTTTTC
63 AAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAA-ATTTC
* * * * *
15015524 -AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTCAAAAGAA
1 AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTCAAAAAAA
*
15015588 TATTTTT-AGGGAAAAGTTAAAAGTATCAATTTT
66 TATTTTTGA-GGAAAAGTTGAAAGTATCAATTTT
15015621 TTCTGCACAA
Statistics
Matches: 383, Mismatches: 49, Indels: 38
0.81 0.10 0.08
Matches are distributed among these distances:
114 1 0.00
115 24 0.06
116 64 0.17
117 127 0.33
118 68 0.18
119 63 0.16
120 36 0.09
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (116 bp):
AAAAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTCAAAAAAA
TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:15015687 original size:13 final size:12
Alignment explanation
Indices: 15015654--15015687 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
15015644 TTTCTTCCTC
15015654 TTTTTTTATTTT
1 TTTTTTTATTTT
15015666 TTATTTTTATTTT
1 TT-TTTTTATTTT
15015679 TTTTCTTTA
1 TTTT-TTTA
15015688 AATAATCTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTTATTTT
Found at i:15019115 original size:20 final size:20
Alignment explanation
Indices: 15019092--15019134 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
15019082 TTCTTTATTA
15019092 TCTCAGTTACATCTTGATTT
1 TCTCAGTTACATCTTGATTT
15019112 TCTCAGTTACATCTTGATTT
1 TCTCAGTTACATCTTGATTT
15019132 TCT
1 TCT
15019135 ACCCCTCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.09, T:0.51
Consensus pattern (20 bp):
TCTCAGTTACATCTTGATTT
Found at i:15021236 original size:16 final size:16
Alignment explanation
Indices: 15021194--15021227 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
15021184 AAAGATTCTT
*
15021194 GATAAGCAAATTAGTA
1 GATAAGTAAATTAGTA
15021210 GATAAGTAAATTAGTA
1 GATAAGTAAATTAGTA
15021226 GA
1 GA
15021228 CTTATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (16 bp):
GATAAGTAAATTAGTA
Found at i:15022156 original size:12 final size:13
Alignment explanation
Indices: 15022133--15022179 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
15022123 TTATATATAC
*
15022133 TAAAAATTATTTA
1 TAAATATTATTTA
15022146 TAAAT-TTATTTA
1 TAAATATTATTTA
* *
15022158 AAAATATTTTTTGA
1 TAAATATTATTT-A
15022172 TAAATATT
1 TAAATATT
15022180 TAAAAATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
12 11 0.39
13 9 0.32
14 8 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (13 bp):
TAAATATTATTTA
Found at i:15023456 original size:85 final size:85
Alignment explanation
Indices: 15023348--15024096 Score: 448
Period size: 85 Copynumber: 8.8 Consensus size: 85
15023338 AGGTAAGCCC
* * * *
15023348 GAGCTTTTTGACCGAGCTATTTTGTCGAATT-GAGCTTTTATAAAGGTATTTTGTAGATCTAAGG
1 GAGCTTTTTGACCAAGCTGTTTTGTCGAATTAG-GCCTTTATAAAGGTATTTTGTAGATCTAAGC
* *
15023412 TCTTTTAGCCAAGCTAAGTCT
65 TCTTTTAGTCAAGCTGAGTCT
* * * * * * * *
15023433 AAGCTTTTTGACCTAGTTGTTTTGTTGAATTAGGCCTTTATGAAA-GCATTTTATAGATTTGAGC
1 GAGCTTTTTGACCAAGCTGTTTTGTCGAATTAGGCCTTTAT-AAAGGTATTTTGTAGATCTAAGC
15023497 TCTTTTAGTCAAGCTGAGT-T
65 TCTTTTAGTCAAGCTGAGTCT
* * * ** * * *
15023517 CGAGCTCTTTT-ACCAAACTATTTTATCTTATTAGGCCTTTATGAAGGCATTTTGTATATCTAAG
1 -GAGCT-TTTTGACCAAGCTGTTTTGTCGAATTAGGCCTTTATAAAGGTATTTTGTAGATCTAAG
* * *
15023581 CTCTTTTAATCAAACTGAGCCT
64 CTCTTTTAGTCAAGCTGAGTCT
* **** * * * *
15023603 GAGCTCTTTGGTTGAGTTGTTTTCTCGAATTAGGCTTTTATGAAGGTATTTTGTAGATCCT-AGC
1 GAGCTTTTTGACCAAGCTGTTTTGTCGAATTAGGCCTTTATAAAGGTATTTTGTAGAT-CTAAGC
*
15023667 TCTTTTAGTTAAGCTGAGTCT
65 TCTTTTAGTCAAGCTGAGTCT
* * * * ** **
15023688 GAGCTTTTT-AGTCAAGCTGTTATGTCGAATTAGACCTTTATAAAGATATTTTGTAGATCCGATA
1 GAGCTTTTTGA-CCAAGCTGTTTTGTCGAATTAGGCCTTTATAAAGGTATTTTGTAGATCTAAGC
* **
15023752 TCTTTTGGTTTAGCTGAGT-T
65 TCTTTTAGTCAAGCTGAGTCT
* * * * *
15023772 CAAG-TTCTTT-AGCTAAGCTATTTTGTCGAATT-GGACCTTTATAAAAGCT-TTTTATAGATCT
1 -GAGCTT-TTTGA-CCAAGCTGTTTTGTCGAATTAGG-CCTTTAT-AAAGGTATTTTGTAGATCT
* * *
15023833 AAACTATTTTA-TCAAGTTGAGTCT
61 AAGCTCTTTTAGTCAAGCTGAGTCT
* * * * * * * *
15023857 GAGCTCTTTGATCGAGCTGTTTTGTTGAATTTGGCCTTTATGAAGGTATTTTGTAGATTTGAGCT
1 GAGCTTTTTGACCAAGCTGTTTTGTCGAATTAGGCCTTTATAAAGGTATTTTGTAGATCTAAGCT
* * * *
15023922 ATTTTAAAT-GAGCTGAGTCC
66 CTTTT-AGTCAAGCTGAGTCT
* * * * * * * * * * * * * * *
15023942 AAGC-TCTTAAGTCGAGTTGTTTTGTCAAATTAGGCATTTATGAATGCATTTTTTAGAACCAAAC
1 GAGCTTTTTGA-CCAAGCTGTTTTGTCGAATTAGGCCTTTATAAAGGTATTTTGTAGATCTAAGC
* * *
15024006 TCTTTTAGTGAAGTTGAGTCC
65 TCTTTTAGTCAAGCTGAGTCT
* * * * * * *
15024027 GAGCTCTTT-AGCCGAGCTGTTTTGTCGAATTAAGCATTTATAAAGGCATTTTGTAGATCCAAGG
1 GAGCTTTTTGA-CCAAGCTGTTTTGTCGAATTAGGCCTTTATAAAGGTATTTTGTAGATCTAAGC
15024091 TCTTTT
65 TCTTTT
15024097 GGACGAACTG
Statistics
Matches: 509, Mismatches: 131, Indels: 48
0.74 0.19 0.07
Matches are distributed among these distances:
83 4 0.01
84 69 0.14
85 417 0.82
86 19 0.04
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.42
Consensus pattern (85 bp):
GAGCTTTTTGACCAAGCTGTTTTGTCGAATTAGGCCTTTATAAAGGTATTTTGTAGATCTAAGCT
CTTTTAGTCAAGCTGAGTCT
Found at i:15023728 original size:170 final size:171
Alignment explanation
Indices: 15023362--15024181 Score: 551
Period size: 170 Copynumber: 4.8 Consensus size: 171
15023352 TTTTTGACCG
* * * * * * *
15023362 AGCTATTTTGTCGAATT-GAGCTTTTATAAAGGTATTTTGTAGATCTAAGGTCTTTT--AGCCAA
1 AGCTGTTTTGTCGAATTAGA-CCTTTATAAAGGCATTTTGTAGATCCAAGCTCTTTTAAATCGAA
* * * ** * *
15023424 GCTAAGTCTAAGCTTTTTGACCT-AGTTGTTTTGTTGAATTAGGCCTTTATGAAAGCATTTTATA
65 -CTGAGTCCAAGCTCTTT-AGTTGAGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATA
*
15023488 GAT-TTGAGCTCTTTTAGTCAAGCTGAGT-TCGAGCTCTTTTA-CCA
128 GATCCT-AGCTCTTTTAGTCAAGCTGAGTCT-GAGCTC-TTTAGCCA
* * * ** * * * * *
15023532 AACTATTTTATCTTATTAGGCCTTTATGAAGGCATTTTGTATATCTAAGCTCTTTT-AATCAAAC
1 AGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAGATCCAAGCTCTTTTAAATCGAAC
* * * * * *
15023596 TGAG-CCTGAGCTCTTTGGTTGAGTTGTTTTCTCGAATTAGGCTTTTATGAAGGTATTTTGTAGA
66 TGAGTCC-AAGCTCTTTAGTTGAGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATAGA
* * *
15023660 TCCTAGCTCTTTTAGTTAAGCTGAGTCTGAGCTTTTTAGTCA
130 TCCTAGCTCTTTTAGTCAAGCTGAGTCTGAGCTCTTTAGCCA
* ** * ** ** ** *
15023702 AGCTGTTATGTCGAATTAGACCTTTATAAAGATATTTTGTAGATCCGATATCTTTT-GGTTTAGC
1 AGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAGATCCAAGCTCTTTTAAATCGAAC
* * * * * * * * *
15023766 TGAGTTCAAGTTCTTTAGCTAAGCTATTTTGTCGAATT-GGACCTTTATAAAAGCTTTTTATAGA
66 TGAGTCCAAGCTCTTTAGTTGAGTTGTTTTGTCGAATTAGG-CCTTTATGAAGGCATTTTATAGA
* * * * *
15023830 T-CTAAACTATTTTA-TCAAGTTGAGTCTGAGCTCTTT-GATCG
130 TCCT-AGCTCTTTTAGTCAAGCTGAGTCTGAGCTCTTTAG-CCA
* * * * * *** * *
15023871 AGCTGTTTTGTTGAATTTGGCCTTTATGAAGGTATTTTGTAGATTTGAGCTATTTTAAAT-GAGC
1 AGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAGATCCAAGCTCTTTTAAATCGAAC
* * * * * * *
15023935 TGAGTCCAAGCTCTTAAGTCGAGTTGTTTTGTCAAATTAGGCATTTATGAATGCATTTTTTAGAA
66 TGAGTCCAAGCTCTTTAGTTGAGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATAGAT
* * * * * *
15024000 CCAAACTCTTTTAGTGAAGTTGAGTCCGAGCTCTTTAGCCG
131 CCTAGCTCTTTTAGTCAAGCTGAGTCTGAGCTCTTTAGCCA
* * **
15024041 AGCTGTTTTGTCGAATTA-AGCATTTATAAAGGCATTTTGTAGATCCAAGGTCTTTTGGA-CGAA
1 AGCTGTTTTGTCGAATTAGA-CCTTTATAAAGGCATTTTGTAGATCCAAGCTCTTTTAAATCGAA
* * * * * * * *
15024104 CTGTGTCCAAGCTCTTTGGTTGAGCTATTTTATC-AAGTTGGGCCTTCATGAAGGCATTTTGTAG
65 CTGAGTCCAAGCTCTTTAGTTGAGTTGTTTTGTCGAA-TTAGGCCTTTATGAAGGCATTTTATAG
*
15024168 ATCCGAGCTCTTTT
129 ATCCTAGCTCTTTT
15024182 GGTTGAGCTG
Statistics
Matches: 498, Mismatches: 133, Indels: 38
0.74 0.20 0.06
Matches are distributed among these distances:
168 1 0.00
169 137 0.28
170 351 0.70
171 9 0.02
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.41
Consensus pattern (171 bp):
AGCTGTTTTGTCGAATTAGACCTTTATAAAGGCATTTTGTAGATCCAAGCTCTTTTAAATCGAAC
TGAGTCCAAGCTCTTTAGTTGAGTTGTTTTGTCGAATTAGGCCTTTATGAAGGCATTTTATAGAT
CCTAGCTCTTTTAGTCAAGCTGAGTCTGAGCTCTTTAGCCA
Found at i:15023769 original size:255 final size:253
Alignment explanation
Indices: 15023343--15023914 Score: 596
Period size: 255 Copynumber: 2.2 Consensus size: 253
15023333 GATCAAGGTA
* * * * *
15023343 AGCCCGAGCTTTTTGACCGAGCTATTTTGTCGAATTGAGCTTTTATAAAGGTATTTTGTAGATCT
1 AGCCTGAGCTCTTTGATCGAGCTGTTTTGTCGAATTG-GCTTTTATGAAGGTATTTTGTAGATCT
* * * * * *
15023408 AAGGTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGACCTAGTTGTTTTGTTGAATTAGGCCTTTA
65 AAGCTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGACCAAGCTGTTATGTCGAATTAGACCTTTA
** * *
15023473 TGAAAGCATTTTATAGATTTGAGCTCTTTTAGTCAAGCTGAGTTCGAGCTCTTTTA-CCAAACTA
130 TGAAAGCATTTTATAGATCCGAGATCTTTTAGTCAAGCTGAGTTCAAGCTC-TTTAGCCAAACTA
** * * * * * *
15023537 TTTTATCTTATTAGG-CCTTTATGAAGGCATTTTGTATATCTAAGCTCTTTTAATCAAACTG
194 TTTTATCGAATT-GGACCTTTATAAAAGCATTTTATAGATCTAAACTATTTT-ATCAAACTG
* * * *
15023598 AGCCTGAGCTCTTTGGTTGAGTTGTTTTCTCGAATTAGGCTTTTATGAAGGTATTTTGTAGATCC
1 AGCCTGAGCTCTTTGATCGAGCTGTTTTGTCGAATT-GGCTTTTATGAAGGTATTTTGTAGAT-C
** * * *
15023663 T-AGCTCTTTTAGTTAAGCTGAGTCTGAGCTTTTT-AGTCAAGCTGTTATGTCGAATTAGACCTT
64 TAAGCTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGA-CCAAGCTGTTATGTCGAATTAGACCTT
* * * * ** * * *
15023726 TAT-AAAGATATTTTGTAGATCCGATATCTTTTGGTTTAGCTGAGTTCAAGTTCTTTAGCTAAGC
128 TATGAAAG-CATTTTATAGATCCGAGATCTTTTAGTCAAGCTGAGTTCAAGCTCTTTAGCCAAAC
* * **
15023790 TATTTTGTCGAATTGGACCTTTATAAAAGCTTTTTATAGATCTAAACTATTTTATCAAGTTG
192 TATTTTATCGAATTGGACCTTTATAAAAGCATTTTATAGATCTAAACTATTTTATCAAACTG
* * *
15023852 AGTCTGAGCTCTTTGATCGAGCTGTTTTGTTGAATTTGGCCTTTATGAAGGTATTTTGTAGAT
1 AGCCTGAGCTCTTTGATCGAGCTGTTTTGTCGAA-TTGGCTTTTATGAAGGTATTTTGTAGAT
15023915 TTGAGCTATT
Statistics
Matches: 258, Mismatches: 52, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
254 71 0.28
255 184 0.71
256 3 0.01
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.42
Consensus pattern (253 bp):
AGCCTGAGCTCTTTGATCGAGCTGTTTTGTCGAATTGGCTTTTATGAAGGTATTTTGTAGATCTA
AGCTCTTTTAGCCAAGCTAAGTCTAAGCTTTTTGACCAAGCTGTTATGTCGAATTAGACCTTTAT
GAAAGCATTTTATAGATCCGAGATCTTTTAGTCAAGCTGAGTTCAAGCTCTTTAGCCAAACTATT
TTATCGAATTGGACCTTTATAAAAGCATTTTATAGATCTAAACTATTTTATCAAACTG
Found at i:15024117 original size:85 final size:84
Alignment explanation
Indices: 15023360--15024183 Score: 349
Period size: 85 Copynumber: 9.7 Consensus size: 84
15023350 GCTTTTTGAC
* * * * * * * *
15023360 CGAGCTATTTTGTCGAATT-GAGCTTTTATAAAGGTATTTTGTAGATCTAAGGTCTTTTAGCCAA
1 CGAGCTGTTTTGTC-AATTAG-GCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGGCGAA
* * * *
15023424 GCTAAGTCTAAGCT-TTTTGAC
64 GCTGAGTCCAAGCTCTTTAG-T
* * * * * * *** *
15023445 CTAGTTGTTTTGTTGAATTAGGCCTTTATGAAAGCATTTTATAGATTTGAGCTCTTTTAGTC-AA
1 CGAGCTGTTTTG-TCAATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTT-GGCGAA
* * *
15023509 GCTGAGTTCGAGCTCTTTTA-C
64 GCTGAGTCCAAGCTC-TTTAGT
* * * * * * * * **
15023530 CAAACTATTTTATCTTATTAGGCCTTTATGAAGGCATTTTGTATATCTAAGCTCTTTTAATC-AA
1 CGAGCTGTTTTGTC-AATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTT-GGCGAA
* * *
15023594 ACTGAG-CCTGAGCTCTTTGGT
64 GCTGAGTCC-AAGCTCTTTAGT
* * * * * * * **
15023615 TGAGTTGTTTTCTCGAATTAGGCTTTTATGAAGGTATTTTGTAGATCCTAGCTCTTTTAGTTAAG
1 CGAGCTGTTTTGTC-AATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGGCGAAG
** *
15023680 CTGAGTCTGAGCTTTTTAGT
65 CTGAGTCCAAGCTCTTTAGT
* * * * * ** * ** ***
15023700 CAAGCTGTTATGTCGAATTAGACCTTTATAAAGATATTTTGTAGATCCGATATCTTTTGGTTTAG
1 CGAGCTGTTTTGTC-AATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGGCGAAG
* *
15023765 CTGAGTTCAAGTTCTTTAG-
65 CTGAGTCCAAGCTCTTTAGT
* * * * * * * * * * **
15023784 CTAAGCTATTTTGTCGAATT-GGACCTTTATAAAAGCTTTTTATAGATCTAAACTATTTTATC-A
1 C-GAGCTGTTTTGTC-AATTAGG-CATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGGCGA
* **
15023847 AGTTGAGTCTGAGCTCTTT-GAT
63 AGCTGAGTCCAAGCTCTTTAG-T
* * * * *** * ***
15023869 CGAGCTGTTTTGTTGAATTTGGCCTTTATGAAGGTATTTTGTAGATTTGAGCTATTTTAAATG-A
1 CGAGCTGTTTTG-TCAATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTT-GGCGAA
*
15023933 GCTGAGTCCAAGCTCTTAAGT
64 GCTGAGTCCAAGCTCTTTAGT
* * * * * * *
15023954 CGAGTTGTTTTGTCAAATTAGGCATTTATGAATGCATTTTTTAGAACCAAACTCTTTTAGTGAAG
1 CGAGCTGTTTTGTC-AATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGGCGAAG
* * *
15024019 TTGAGTCCGAGCTCTTTAGC
65 CTGAGTCCAAGCTCTTTAGT
* * *
15024039 CGAGCTGTTTTGTCGAATTAAGCATTTATAAAGGCATTTTGTAGATCCAAGGTCTTTTGGACGAA
1 CGAGCTGTTTTGTC-AATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGG-CGAA
* *
15024104 -CTGTGTCCAAGCTCTTTGGT
64 GCTGAGTCCAAGCTCTTTAGT
* * * * * * *
15024124 TGAGCTATTTTATCAAGTTGGGCCTTCATGAAGGCATTTTGTAGATCCGAGCTCTTTTGG
1 CGAGCTGTTTTGTCAA-TTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGG
15024184 TTGAGCTGAG
Statistics
Matches: 559, Mismatches: 157, Indels: 46
0.73 0.21 0.06
Matches are distributed among these distances:
83 1 0.00
84 69 0.12
85 478 0.86
86 8 0.01
87 3 0.01
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.41
Consensus pattern (84 bp):
CGAGCTGTTTTGTCAATTAGGCATTTATGAAGGCATTTTGTAGATCCAAGCTCTTTTGGCGAAGC
TGAGTCCAAGCTCTTTAGT
Found at i:15024186 original size:61 final size:61
Alignment explanation
Indices: 15024113--15024256 Score: 184
Period size: 61 Copynumber: 2.4 Consensus size: 61
15024103 ACTGTGTCCA
* * * * *
15024113 AGCTC-TTTGGTTGAGCT-ATTTTATCAAGTTGGGCCTTCATGAAGGCATTTTGTAGATCCG
1 AGCTCTTTTGGTTGAGCTGA-GTTATCAAATTGGACCTTCATGAAGGCATTTAGTAAATCCG
* * *
15024173 AGCTCTTTTGGTTGAGCTGAGTTGTCAAATTGGACTTTCATGAAGGCATTTAGTAAATTCG
1 AGCTCTTTTGGTTGAGCTGAGTTATCAAATTGGACCTTCATGAAGGCATTTAGTAAATCCG
*
15024234 AGCTCTTTTGGTTGCGCTGAGTT
1 AGCTCTTTTGGTTGAGCTGAGTT
15024257 TGAACTTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
60 5 0.07
61 67 0.92
62 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.26, T:0.39
Consensus pattern (61 bp):
AGCTCTTTTGGTTGAGCTGAGTTATCAAATTGGACCTTCATGAAGGCATTTAGTAAATCCG
Found at i:15026279 original size:13 final size:13
Alignment explanation
Indices: 15026261--15026286 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15026251 TATAAAATTA
15026261 AAATTTTATAAAT
1 AAATTTTATAAAT
15026274 AAATTTTATAAAT
1 AAATTTTATAAAT
15026287 TTTGAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTTTATAAAT
Found at i:15031091 original size:37 final size:37
Alignment explanation
Indices: 15031041--15031118 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
15031031 AATTTCTCTA
*
15031041 ATTTGAGGAAAAATAGGACGGATGGGGTACAAGAAAG
1 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
15031078 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
1 ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
15031115 ATTT
1 ATTT
15031119 TAATATAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.44, C:0.05, G:0.32, T:0.19
Consensus pattern (37 bp):
ATTTGAAGAAAAATAGGACGGATGGGGTACAAGAAAG
Found at i:15033934 original size:16 final size:16
Alignment explanation
Indices: 15033913--15033946 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15033903 TAAAAATAAG
* *
15033913 TAAATTTGTAATATGT
1 TAAATTTGCAACATGT
15033929 TAAATTTGCAACATGT
1 TAAATTTGCAACATGT
15033945 TA
1 TA
15033947 TGAGTAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (16 bp):
TAAATTTGCAACATGT
Found at i:15033993 original size:6 final size:6
Alignment explanation
Indices: 15033982--15034006 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15033972 ATTGCTACAT
15033982 TAGAAA TAGAAA TAGAAA TAGAAA T
1 TAGAAA TAGAAA TAGAAA TAGAAA T
15034007 GCATGTTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (6 bp):
TAGAAA
Found at i:15040352 original size:12 final size:12
Alignment explanation
Indices: 15040331--15040366 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
15040321 TTATATATAC
15040331 TAAAAA-TTATT
1 TAAAAATTTATT
15040342 TAAAAATTTATT
1 TAAAAATTTATT
*
15040354 TAAAAATCTATT
1 TAAAAATTTATT
15040366 T
1 T
15040367 TGATAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (12 bp):
TAAAAATTTATT
Found at i:15041451 original size:28 final size:28
Alignment explanation
Indices: 15041402--15041455 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
15041392 CGAGATAAAC
* * **
15041402 TTTTTAATCGAAGTGGTTGAGATGAGTT
1 TTTTTAATCAAAATGGCCGAGATGAGTT
15041430 TTTTTAATCAAAATGGCCGAGATGAG
1 TTTTTAATCAAAATGGCCGAGATGAG
15041456 CTCTTTTGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (28 bp):
TTTTTAATCAAAATGGCCGAGATGAGTT
Found at i:15041681 original size:85 final size:85
Alignment explanation
Indices: 15041589--15042491 Score: 436
Period size: 85 Copynumber: 10.6 Consensus size: 85
15041579 TTGATTGAGT
* * *
15041589 TGTTTTGTCGAATTGAGCTTTTATGAAGGTATTTTGTAGATTCAAGGTCTTTTAATCGAGCTGAG
1 TGTTTTGTCGAATTGAGCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTTAATCAAGCTGAG
* *
15041654 TCTGAGCTTTTTGGCCTAGC
66 TCTGAGCTCTTTGGCCAAGC
* * * * ** *
15041674 TGTTTTGTCGAATTGGGCCTTTATGAAAGCATTTTATAGATTTGAGCTCTTTTAGTCAAGCTGAG
1 TGTTTTGTCGAATTGAGCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTTAATCAAGCTGAG
* * **
15041739 T-TCGAGCTTTTTTGCCAAAT
66 TCT-GAGCTCTTTGGCCAAGC
* * ** * * * * **
15041759 TATTTTATCTTATT-AGGCCTTTATCAAAGCATTTTGTATATAT-AAGCTCTTTTAATCAAATTG
1 TGTTTTGTCGAATTGA-GCCTTTATGAAGGTATTTTGTAGAT-TCAAGCTCTTTTAATCAAGCTG
* *** *
15041822 AGCCTGAGCTCTTTGGTTGAGT
64 AGTCTGAGCTCTTTGGCCAAGC
* * * * * *
15041844 TGTTTTCTCGAATT-AGGCCTTTATGAAGGTATTTTGTAGATCCTAGCTCTTTTAGTTAAGCTAA
1 TGTTTTGTCGAATTGA-GCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTTAATCAAGCTGA
* **
15041908 CTCTGAGCTCTTTGGTGAAGC
65 GTCTGAGCTCTTTGGCCAAGC
* * * * * ** ** *
15041929 TGTTATGTCAAATT-AGACCTTTATAAAGATATTTTGTAGATCTGATA--TCTTTTGGTTTAGTT
1 TGTTTTGTCGAATTGAG-CCTTTATGAAGGTATTTTGTAGAT-TCA-AGCTCTTTTAATCAAGCT
* * * *
15041991 GAGT-TCAAGTTCTTTAGCTAAGC
63 GAGTCT-GAGCTCTTTGGCCAAGC
* * * * * * * *
15042014 TATTTTGTCGAATTTGA-CCTTTATAAAAGCT-TTTTATAGA-TCTAAACTATTTTGATCAAGTT
1 TGTTTTGTCGAA-TTGAGCCTTTAT-GAAGGTATTTTGTAGATTC-AAGCTCTTTTAATCAAGCT
* * **
15042076 GAATCTGAGCTCCTTGATCAAGC
63 GAGTCTGAGCTCTTTGGCCAAGC
* * * ** * *
15042099 TATTTTGTTGAATTTG-GCCTTTATGAAAGTATTTTGTAGATTTGAGCTATTTTAAACAAGCTGA
1 TGTTTTGTCGAA-TTGAGCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTTAATCAAGCTGA
* * * *
15042163 GTCTAAGCTC-TTGAGTCGAGT
65 GTCTGAGCTCTTTG-GCCAAGC
* * * * * ** *
15042184 TGTTTTGTCAAATT-AGGCATTTATGAAGGCATTTTTTAGATCCAAGCTCTTTTAGCCAAGTTGA
1 TGTTTTGTCGAATTGA-GCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTTAATCAAGCTGA
* * *
15042248 ATCTGAGCTCTTTAGCCGAGC
65 GTCTGAGCTCTTTGGCCAAGC
* * * * * *
15042269 TGTTTTGTCGAATTGGGCCTTTATGAAGGCATTTTGTAGATCCAAGGTCTTTTGGATGAA-CTGA
1 TGTTTTGTCGAATTGAGCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTT-AATCAAGCTGA
* ** * *
15042333 CTCCAAGCTCTTTGGTCGAGC
65 GTCTGAGCTCTTTGGCCAAGC
* * * * ** * * * ** * *
15042354 TATTTTATCAAATTGGGCCTCCATGAAGGCATTTTGTAGATCCGAGCTCTTTTGGTTAAGCTGAA
1 TGTTTTGTCGAATTGAGCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTTAATCAAGCTGAG
* ** * *
15042419 TCCGAGCTCTTTGATCGAGT
66 TCTGAGCTCTTTGGCCAAGC
* * ** *
15042439 TATTTTGTCAAATT-AAACTTTCATGAAGGTATTTTGTAAATTCGAA-CTCTTTT
1 TGTTTTGTCGAATTGAGCCTTT-ATGAAGGTATTTTGTAGATTC-AAGCTCTTTT
15042492 GGCTGAGCTG
Statistics
Matches: 628, Mismatches: 162, Indels: 56
0.74 0.19 0.07
Matches are distributed among these distances:
83 2 0.00
84 18 0.03
85 590 0.94
86 16 0.03
87 2 0.00
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (85 bp):
TGTTTTGTCGAATTGAGCCTTTATGAAGGTATTTTGTAGATTCAAGCTCTTTTAATCAAGCTGAG
TCTGAGCTCTTTGGCCAAGC
Found at i:15042037 original size:255 final size:254
Alignment explanation
Indices: 15041567--15042243 Score: 586
Period size: 255 Copynumber: 2.7 Consensus size: 254
15041557 GATCAAGGTA
* * *
15041567 AGCCTGAGCTATTTGATTGAGTTGTTTTGTCGAATTGAGCTTTTATGAAGGTATTTTGTAGATTC
1 AGCCTGAGCTCTTTGATTGAGTTGTTTTGTCGAATTG-GCCTTTATGAAGGTATTTTGTAGATCC
* * * * * * * * * *
15041632 AAGGTCTTTTAATCGAGCTGAGTCTGAGCTTTTTGGCCTAGCTGTTTTGTCGAATTGGGCCTTTA
65 AAGCTCTTTTAATCAAGCTAACTCTGAGCTCTTTGGCCAAGCTGTTATGTCAAATTAGACCTTTA
* * * * *
15041697 TGAAAGCATTTTATAGATTTGAGCTCTTTTAGTCAAGCTGAGTTCGAGCTTTTTTGCCAAATTAT
130 TGAAAGCATTTTATAGATCTGAGATCTTTTAGTCAAGCTGAGTTCAAGCTTTTTAGCCAAACTAT
** * * * * * *
15041762 TTTATCTTATTAGGCCTTTATCAAAGCATTTTGTATATATAAGCTCTTTTAATCAAATTG
195 TTTATCGAATTAGACCTTTATAAAAGCATTTTATAGATATAAACTATTTTAATCAAATTG
* *
15041822 AGCCTGAGCTCTTTGGTTGAGTTGTTTTCTCGAATTAGGCCTTTATGAAGGTATTTTGTAGATCC
1 AGCCTGAGCTCTTTGATTGAGTTGTTTTGTCGAATT-GGCCTTTATGAAGGTATTTTGTAGATCC
* * * **
15041887 TAGCTCTTTTAGTTAAGCTAACTCTGAGCTCTTTGGTGAAGCTGTTATGTCAAATTAGACCTTTA
65 AAGCTCTTTTAATCAAGCTAACTCTGAGCTCTTTGGCCAAGCTGTTATGTCAAATTAGACCTTTA
* * * * ** * * *
15041952 T-AAAGATATTTTGTAGATCTGATATCTTTTGGTTTAGTTGAGTTCAAG-TTCTTTAGCTAAGCT
130 TGAAAG-CATTTTATAGATCTGAGATCTTTTAGTCAAGCTGAGTTCAAGCTT-TTTAGCCAAACT
* * * * * *
15042015 ATTTTGTCGAATTTGACCTTTATAAAAGCTTTTTATAGATCTAAACTATTTTGATCAAGTTG
193 ATTTTATCGAATTAGACCTTTATAAAAGCATTTTATAGATATAAACTATTTTAATCAAATTG
** * ** * * * * **
15042077 AATCTGAGCTCCTTGATCAAGCTATTTTGTTGAATTTGGCCTTTATGAAAGTATTTTGTAGATTT
1 AGCCTGAGCTCTTTGATTGAGTTGTTTTGTCGAA-TTGGCCTTTATGAAGGTATTTTGTAGATCC
* * * * * * * * * * * *
15042142 GAGCTATTTTAAACAAGCTGAGTCTAAGCTC-TTGAGTCGAGTTGTTTTGTCAAATTAGGCATTT
65 AAGCTCTTTTAATCAAGCTAACTCTGAGCTCTTTG-GCCAAGCTGTTATGTCAAATTAGACCTTT
* * ** * *
15042206 ATGAAGGCATTTTTTAGATCCAAGCTCTTTTAGCCAAG
129 ATGAAAGCATTTTATAGATCTGAGATCTTTTAGTCAAG
15042244 TTGAATCTGA
Statistics
Matches: 330, Mismatches: 86, Indels: 12
0.77 0.20 0.03
Matches are distributed among these distances:
254 9 0.03
255 315 0.95
256 6 0.02
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (254 bp):
AGCCTGAGCTCTTTGATTGAGTTGTTTTGTCGAATTGGCCTTTATGAAGGTATTTTGTAGATCCA
AGCTCTTTTAATCAAGCTAACTCTGAGCTCTTTGGCCAAGCTGTTATGTCAAATTAGACCTTTAT
GAAAGCATTTTATAGATCTGAGATCTTTTAGTCAAGCTGAGTTCAAGCTTTTTAGCCAAACTATT
TTATCGAATTAGACCTTTATAAAAGCATTTTATAGATATAAACTATTTTAATCAAATTG
Done.