Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 11 of 120
Found at i:1198853 original size:26 final size:26
Alignment explanation
Indices: 1198823--1198875 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1198813 GTTGGCTTAG
*
1198823 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1198849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1198875 G
1 G
1198876 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1199761 original size:25 final size:26
Alignment explanation
Indices: 1199724--1199775 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
1199714 GTTGACTTAG
*
1199724 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
* *
1199750 GCATAC-GAGTTCTTTCCTACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
1199775 G
1 G
1199776 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:1201383 original size:26 final size:26
Alignment explanation
Indices: 1201353--1201405 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1201343 GTTGACTTAG
1201353 GCATACGCAATTCATTCCCAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
* * *
1201379 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAATTCATTCCCAGTCTAA
1201405 G
1 G
1201406 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGCAATTCATTCCCAGTCTAA
Found at i:1202288 original size:26 final size:26
Alignment explanation
Indices: 1202251--1202329 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
1202241 GTTGACTTAG
* *
1202251 GCATACGAAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1202277 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
1202303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1202329 G
1 G
1202330 ATTCGGTGGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1202764 original size:914 final size:918
Alignment explanation
Indices: 1200458--1203036 Score: 2998
Period size: 914 Copynumber: 2.8 Consensus size: 918
1200448 GTTGGCTTAG
* * * * * * *
1200458 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCGAAGATCGGACCGGAC
1 GCATACGCAATTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * ** * **
1200523 CGAGGGTTGAGGCAGCACATGTTGGGCTCAAGCATGTGTTGGTGCCA-CATTTTTCTTCGTCGGG
66 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CAGCATTTTTCTTCACCGGG
* * * **
1200587 GCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGGTGATC-----G
130 GCACCAT--------C-TCGCCGGAGAACCTGACCGGCGGCATTGGGCTTCCGACGATCGGGGGG
* * * *
1200647 ---GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTA
186 ACCGGGGGGTGTGCGCACATGATGTGCGATGGGCGATGGTACTTGGCCCTTATATTGGCCCCCTA
* ** * **
1200709 TCCATCATCAAACCTTGAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTTTAC-AGGTTTGT
251 TCCCTCATCAAACCTCAAGAACTCACACCCCCTT-AAAGAGAATTTGAGATTTTACAAGG-TTCC
* * ** * ** * *
1200772 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTAC
314 TGCCAGCAGCCATTAAAGTGTCTAAAATGCAGACAATTAATTCAAATGGTCACAAAATCCTGTAC
* * *
1200837 ACTTTGAGTTTTTAG-TAGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
379 ACTTCGAGTTTTTAGCTA-AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCA
* * * * * *
1200901 ATTTTGGGGCC-AAAACCCATTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
443 AGTTT-GGGCCAAAAATCCTTTC-CAAAAAAATTTAAAAAAACCCGAACCGCAAAAAGTTTCAAA
** * *
1200965 AATTGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
506 AATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* **
1201030 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACATAAATATGAAGATGTGCCTAAACCC
571 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGCACCTAAACCC
* * * * * * * * * *
1201095 ACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGGCC-GACGTAGTACCCGCCT
636 ACCTACCACCCAATCGATACACGGATTCCGCATCCCGTCTCTCTCGCCAG-CATAGTGCCCACCC
* * * * * *
1201159 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATC
700 G-CCTCCCACCCGCTCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC
* ** * * * * * * * * **
1201224 GGACAAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCGGGTCGATCCCCG
764 AGACTGGATCGAGGGTTGCGGCAGCAGGATCGACATCACGTAGAGGGGGACCCGACCGATCCCCG
* * * * * * *
1201289 GCTTACGCATCCCGCCCCTCTGGCCAGCTGAGCGCTCACACGCTCGTTTCATGG-GTTGACTTAG
829 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTCGTTTC-GGGAGTTGACTTAG
1201353 GCATAC---G--CA-----A---T--
893 GCATACGAAGTTCAGTCCCAGTCTAA
*
1201364 ---T---C-A-T---TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGCAATTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * **
1201418 CGAGGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTGTTCGTCGGGG
66 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGG
1201483 CACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGCTTCCGACGATCGGGGGGA
131 CACCAT--------C-TCGCCGGAGAACCTGACCGGCGGCATTGGGCTTCCGACGATCGGGGGGA
*
1201548 CCGGGGGGTGTGCGCACATGATGTGGGATGGGCGATGGTACTTGGCCCTTATATTGGCCCCCTAT
187 CCGGGGGGTGTGCGCACATGATGTGCGATGGGCGATGGTACTTGGCCCTTATATTGGCCCCCTAT
*
1201613 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTCCTGC
252 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAAGGTTCCTGC
* * **
1201678 CAGTAGCCATTAAAGTGTCTAAAATGCAGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
317 CAGCAGCCATTAAAGTGTCTAAAATGCAGACAATTAATTCAAATGGTCACAAAATCCTGTACACT
* *
1201743 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTATCAAGTT
382 TCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTT
** * * **
1201808 TGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATCCCGAACCGCAAAACA-TTTCAAAAATTG
447 TGGGCCAAAAATCCTTTCCAAAAAAATTTAAAAAAACCCGAACCGCAAAA-AGTTTCAAAAATCA
*
1201872 TGAAAAATAGAGAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
511 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * ** * *
1201937 GGATTTACAAAG-CATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTACCTGAACCCACCT
576 GAATTTAC-AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGCACCTAAACCCACCT
* * * * * * *
1202001 ACCACCCTATCGATACATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCTG-C-C
640 ACCACCCAATCGATACACGGATTCCGCATCCCGTCTCTCTCGCCAGCATAGTGCCCACCCGCCTC
* * *
1202064 CC-CCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTG
705 CCACCCGCTCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTG
1202128 GATCGAGGGTTGCGGCAGCAGGATCGACATCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGC
770 GATCGAGGGTTGCGGCAGCAGGATCGACATCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGC
1202193 GCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTCGTTTCGGGAGTTGACTTAGGCATACG
835 GCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCACACTCGTTTCGGGAGTTGACTTAGGCATACG
1202258 AAGTTCAGTCCCAGTCTAA
900 AAGTTCAGTCCCAGTCTAA
* * **** *
1202277 GCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTC-GGTGGGG
1 GCATACGCAATTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGA
1202341 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGG
65 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGG
* * * * *
1202406 GCACCAT-T-GCCGGAGAACTTGACCGGCGGCATTGGGGTTCCGATGATCGAGGGGGTCGGGGGG
130 GCACCATCTCGCCGGAGAACCTGACCGGCGGCATTGGGCTTCCGACGATCG-GGGGGACCGGGGG
* *
1202469 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
194 GTGTGCGCACATGATGTGCGATGGGCGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
1202534 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTCGCTGCCAGCAG
259 CAAACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAAGGTTC-CTGCCAGCAG
* * *
1202598 CCATTAAAGTGTCTGAAATG-ACGACAATTAATTGAAATGGTCACAAAATCTTGTACACTTCGAG
323 CCATTAAAGTGTCTAAAATGCA-GACAATTAATTCAAATGGTCACAAAATCCTGTACACTTCGAG
*
1202662 TTTTTGGCTAAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCT-TCCAAGTTTGGG
387 TTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAT-CAAGTTT-GG
*
1202725 GCCAAAACTCC-TTCCAAAAAAATTTAAAGAAAACCCGAACCGCAAAAAGTTTCAAAAATCATGA
450 GCCAAAAATCCTTTCCAAAAAAATTTAAA-AAAACCCGAACCGCAAAAAGTTTCAAAAATCATGA
* *
1202789 AAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
514 AAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
1202854 TTTACAAGCCATAAAAATGGCATTGGCACACATAAATATGAAGATGCGCCTAAACCCACCTACCA
579 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGCACCTAAACCCACCTACCA
* * * * * *
1202919 CCCAATCGATCCACGGATTCCGCCTCCCGTCTCTTTCGTCAGCGTAGTGCCCGCCCGCCTTCCCA
644 CCCAATCGATACACGGATTCCGCATCCCGTCTCTCTCGCCAGCATAGTGCCCACCCGCC-TCCCA
*
1202984 CCCGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
708 CCCGCTCGTTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG
1203037 CATACAGAGT
Statistics
Matches: 1462, Mismatches: 155, Indels: 100
0.85 0.09 0.06
Matches are distributed among these distances:
894 1 0.00
895 153 0.10
897 2 0.00
898 166 0.11
899 3 0.00
900 2 0.00
901 1 0.00
902 216 0.15
903 241 0.16
904 9 0.01
908 1 0.00
911 1 0.00
912 1 0.00
913 89 0.06
914 413 0.28
915 1 0.00
916 1 0.00
917 3 0.00
918 49 0.03
921 1 0.00
924 106 0.07
925 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (918 bp):
GCATACGCAATTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGG
CACCATCTCGCCGGAGAACCTGACCGGCGGCATTGGGCTTCCGACGATCGGGGGGACCGGGGGGT
GTGCGCACATGATGTGCGATGGGCGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCAAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAAGGTTCCTGCCAGCAGCCA
TTAAAGTGTCTAAAATGCAGACAATTAATTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTT
TAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGCCAAA
AATCCTTTCCAAAAAAATTTAAAAAAACCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGCACCTAAACCCACCTACCACCCAATC
GATACACGGATTCCGCATCCCGTCTCTCTCGCCAGCATAGTGCCCACCCGCCTCCCACCCGCTCG
TTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTT
GCGGCAGCAGGATCGACATCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
CTCTGGCCGGCTGAGTGCCCGCACACTCGTTTCGGGAGTTGACTTAGGCATACGAAGTTCAGTCC
CAGTCTAA
Found at i:1203040 original size:26 final size:26
Alignment explanation
Indices: 1203010--1203062 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1203000 GTTGACTTAG
*
1203010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1203036 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1203062 G
1 G
1203063 ATAGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1203950 original size:26 final size:26
Alignment explanation
Indices: 1203914--1203966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1203904 GTTGACTTAG
1203914 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1203940 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1203966 G
1 G
1203967 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1204863 original size:25 final size:27
Alignment explanation
Indices: 1204818--1204871 Score: 85
Period size: 25 Copynumber: 2.1 Consensus size: 27
1204808 GGGTTGACCT
1204818 AGGCATACGGAGTGCATTCCCAGTCTA
1 AGGCATACGGAGTGCATTCCCAGTCTA
*
1204845 AGGCATATGGA-T-CATTCCCAGTCTA
1 AGGCATACGGAGTGCATTCCCAGTCTA
1204870 AG
1 AG
1204872 ATCGGATGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 15 0.58
26 1 0.04
27 10 0.38
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (27 bp):
AGGCATACGGAGTGCATTCCCAGTCTA
Found at i:1205761 original size:26 final size:26
Alignment explanation
Indices: 1205732--1205784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1205722 GTTGACTTAG
1205732 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
* *
1205758 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
1205784 G
1 G
1205785 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:1210299 original size:873 final size:866
Alignment explanation
Indices: 1208830--1210588 Score: 2520
Period size: 873 Copynumber: 2.0 Consensus size: 866
1208820 TAAGCTTACC
* *
1208830 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACAGTTGCAGCAGCACATGCTGGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGACAGTTGCAGCAGCACATACTGGGCTCAGGC
* * * *
1208895 ATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCGTCACCGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACAGGAGCATCGTCGGAGAACCTGAC
* * * * * *
1208960 TGACGTTGGGGTTCCGATGATCGGGTGGGCTTGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
131 CGACATTGAGGTTCCGACGATCGGGTGGGCTCGGGGGGGTGTGCGCACATGATGTGGGATGGGTG
* * * * * * *
1209025 TTGGTACTTGGCTCTTATACTGGCCCCCAATCCCTCATCAAACTTTGAGAACTCACACCCCCTTA
196 CTGGTACTAGGCCCTTATAATGGCCCCCAATCCCTCATAAAACCTCGAGAACTCACACCCCCTTA
* * *
1209090 AAGAGCATTTGAGATTTTACAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
261 AAGAGCATTTGAGATTTTACAGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGAGACACTT
1209155 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
1209220 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCATTGCAAAAAAATTTAAAAAAA
391 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCATTCCAAAAAAATTTAAAAAAA
* *
1209285 TCCTGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAATGAAACT
456 TCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAACGAAACT
* * *
1209350 TCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACGTAA
521 TCACGCGAAGGCTTAAGAGACCATTATATGAATTTACAAGACATAAAAATGGCATTGGCACGCAA
* * * *
1209415 AAAAATGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCATGGCTTGTGCATCCCGTCTC
586 AAAAATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
1209480 TCTGTCCGACGTAGTGCCCACCTGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
651 TCTGGCCGACGTAGTG--C-CC-GCCCGCCCGATCGTTTCATCGATTGGCTTAGGCATACAGAGT
* * *
1209545 TCATTCCTAGTCTAAGATCAGACCAAACT-GAGGGT-CATGGTAGCAGGATC-GACAGCACGCAG
712 TCATTCCCAGTCTAAGATCAGACCAAACTAGAGGGTGCA--GCAGCAGGATCAG-CAGCACGCAA
* * * * *
1209607 AGGGGGACCAGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCTGACTGAGCTCCCGTACGC
774 AGGGGGACCAGGTCGATCCTAGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGC
* *
1209672 TCGTTTCGTGGGTTGACTTAGGCATACG
839 TCGTTCCGTGGGTTGACTTAGGCATACA
* * ** ** *
1209700 GAGTTCATTCCCAGTCTAAGATCGAATCGGACCGAGGGTTGTGGCAGCACATACTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGACAGTTGCAGCAGCACATACTGGGCTCAGGC
**
1209765 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTAGGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACAGGAGCATCGTCGGAGAACCTGA-
* *
1209830 CGGCGACATTGAGGTTCTGGCGATCGGG-GGGC-CGGGGGGGTGTGCGCACATGATGTGGGATGG
130 C--CGACATTGAGGTTCCGACGATCGGGTGGGCTCGGGGGGGTGTGCGCACATGATGTGGGATGG
* *
1209893 GTGCTGGTACTAGGCCCTTATAATGGTCCCCTATCCCTCATAAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTAGGCCCTTATAATGGCCCCCAATCCCTCATAAAACCTCGAGAACTCACACCCCC
*
1209958 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGAGAC
258 TTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGAGAC
*
1210023 ATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
1210088 CCAAAAAAAATACAGGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
387 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAACTCATTCCAAAAAAATTTAA
* * * * *
1210153 AAAAATCCCGAATCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCACG
451 AAAAATCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAACG
* *
1210218 AAACTTCACGTGAAGGCTTAAGAGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACGCGAAGGCTTAAGAGACCATTATATGAATTTACAAGACATAAAAATGGCATTGGCA
* * ** * * *
1210283 TGCATAAATGTGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCGTCCT
581 CGCAAAAAAATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
1210348 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGATCGTTTCGTCGATTGGCTTAGGCTTACAGAG
646 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGATCGTTTCATCGATTGGCTTAGGCATACAGAG
* * * * * *
1210413 TTCATTCCCAGTCTAAGATCAGACCAGACTATAGGTTGCAGCAGTAGGATCAGTAGCATGCAAAG
711 TTCATTCCCAGTCTAAGATCAGACCAAACTAGAGGGTGCAGCAGCAGGATCAGCAGCACGCAAAG
* * * * *
1210478 GGGGACCCGGTCGATCCTAGGCTTACGCATCTCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
776 GGGGACCAGGTCGATCCTAGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTC
1210543 GTTCCGTGGGTTGACTTAGGCATACA
841 GTTCCGTGGGTTGACTTAGGCATACA
1210569 GAGTTCATTCCCAGTCTAAG
1 GAGTTCATTCCCAGTCTAAG
1210589 CATACGGCGT
Statistics
Matches: 786, Mismatches: 95, Indels: 17
0.88 0.11 0.02
Matches are distributed among these distances:
869 180 0.23
870 121 0.15
871 112 0.14
872 141 0.18
873 232 0.30
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (866 bp):
GAGTTCATTCCCAGTCTAAGATCGAACCAGACCGACAGTTGCAGCAGCACATACTGGGCTCAGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCACAGGAGCATCGTCGGAGAACCTGAC
CGACATTGAGGTTCCGACGATCGGGTGGGCTCGGGGGGGTGTGCGCACATGATGTGGGATGGGTG
CTGGTACTAGGCCCTTATAATGGCCCCCAATCCCTCATAAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGAGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAACTCATTCCAAAAAAATTTAAAAAAA
TCCCGAACCGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCAACGAAACT
TCACGCGAAGGCTTAAGAGACCATTATATGAATTTACAAGACATAAAAATGGCATTGGCACGCAA
AAAAATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCGATCGTTTCATCGATTGGCTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATCAGACCAAACTAGAGGGTGCAGCAGCAGGATCAGCAGCACGCAAAGGGGGA
CCAGGTCGATCCTAGGCTTACGCATCCCGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTCC
GTGGGTTGACTTAGGCATACA
Found at i:1210591 original size:26 final size:26
Alignment explanation
Indices: 1210562--1210614 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1210552 GTTGACTTAG
1210562 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
1210588 GCATACGGCGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1210614 G
1 G
1210615 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1211342 original size:26 final size:26
Alignment explanation
Indices: 1211303--1211353 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1211293 GTTGACTTAG
*
1211303 GCATGCGGACTTCAATCCCAGTCTAC
1 GCATACGGACTTCAATCCCAGTCTAC
* *
1211329 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGACTTCAATCCCAGTCTA
1211354 AGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGACTTCAATCCCAGTCTAC
Found at i:1213647 original size:26 final size:26
Alignment explanation
Indices: 1213611--1213661 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1213601 TTGACTTAGG
*
1213611 CATACGGAGTTCATTCCTAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
*
1213637 CATATGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1213662 GATCGGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:1214535 original size:26 final size:26
Alignment explanation
Indices: 1214499--1214550 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1214489 TTGACTTAGT
1214499 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1214525 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1214551 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:1214748 original size:888 final size:885
Alignment explanation
Indices: 1212742--1215494 Score: 3888
Period size: 888 Copynumber: 3.1 Consensus size: 885
1212732 GTTGACTTAG
** * * * *
1212742 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACTGCGGGTTGCGACGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
1212807 CTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-----CA------GAGA
* * *
1212872 ACCTGACC-AGCGTCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGTGTGCGG-ACATGATGT
120 ACCTGACCGA-CGGCATTGGGGTTCCGATGATC-GGGGGGTCGGGGGGTGTG-GGCACATGATGC
* * * * * *
1212935 ACGATGGGTGCTGGTACTTTGTCCTTATATTGGCCCCCTATACCTCATCAAACCTAGAGAACTCA
182 ATGATGGGTGCTGGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
1213000 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCGTTAAAGTGTTTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAAA
1213065 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTT
311 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * ** *
1213129 GTGCGTGCCAACAAAAATACAAGGATCACGTCTACTACGTTTGGGGCCAAAACTCCTT-CTGAAA
376 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCA-GTTTGGCTCCAAAACTCCTTCCAG-AA
* * *
1213193 AAATTTTAAAAAATCCCGAACCGCAAAAACTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
439 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG-C
* *
1213258 C-TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATA
503 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1213322 TAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
568 GAATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1213387 GCGCAACCCGTCTCTCTGGCCGACGTGGTGCCCG---CCTG-C-CCC-CTCATTTCGTCGGTTGG
633 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCGCCGCCCTCTCATTTCGTCGGTTGG
*
1213446 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGACCGAGGGTTGTGGTAGCAGGAT
698 CTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGAT
* * ** **
1213511 TGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGATTTTTGCACCCCGCCCCTCTGGCCGGCTG
762 CGGCAGCACGCAGAGGGGGA-CCGACCGATCCTCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTG
* * *
1213576 AGCGCTCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
826 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* *
1213636 ACATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCACATGCTGG
* *
1213700 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGAACCATCGCC-GAGAACCTGACCGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGAACCTGACCGA
* * * *
1213764 TGGCATTGGGGTTCTGATGATCGGGGGGCCAGGGGGGTGTGCGCACATGATGCATGATGGGTGCT
130 CGGCATTGGGGTTCCGATGATCGGGGGGTC-GGGGGGTGTGGGCACATGATGCATGATGGGTGCT
* *
1213829 GGTACTTGGCCCTTATAATGGTCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTTAAA
194 GGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
*
1213894 GACCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTA-A-TTT
259 GAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG-ACACTTT
* * * * *
1213957 TTTCAAATGGTCACAAAATCTTGTACACTACCAGTTTTTAACTGAATTTTTTTGTTCACGCCAAC
323 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
1214022 AAAAATACAAGGATCACGTCTACCAGTTTGGTTCAAAAACTCCTTCCAGAAAAATTTTAAAAAAT
388 AAAAATACAAGGATCACGTCTACCAGTTTGGCTCCAAAACTCCTTCCAGAAAAATTTTAAAAAAT
* *
1214087 CCCGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGGAAAACGAGTCGCCTTGCCATGAAACT
453 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-GAAAACGAGTCGCCTTGCCATGAAACT
* * * * * *
1214152 TCACGCGAAGGCCTAACGTACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCACGCAG
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAG
* * *
1214217 GAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGTGCATCCCGTCTC
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
1214282 TCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCCCTCTCATTTTGTTGGTTGGCTCAGGCATACG
647 TCTGGCCGGCGTAGTGCCCGCCC-CCCG-CCGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
1214347 AAGTTCATTCCAGTCTAAGAGCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAG
710 GAGTTCATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAG
1214412 AGGGGGACTCGACCGATCCTCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
775 AGGGGGAC-CGACCGATCCTCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
1214477 TCGTTTTATGGGTTGACTTAGTCATACGGAGTTCATTCCCAGTCTAA
839 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* *
1214524 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCTGGACCGAGGGTTTCGATC-GCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGCGA-CAGCACATGCTG
*
1214588 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCAGAGAACCTGACCG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGAACCTGACCG
* *
1214653 ACGGCATTAGGGTTCCGACGATCGGGGGGTC-GGGGGTGTGGGCACATGATGCATGATGGGTGCT
129 ACGGCATTGGGGTTCCGATGATCGGGGGGTCGGGGGGTGTGGGCACATGATGCATGATGGGTGCT
1214717 GGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* *
1214782 GAGCATTTGATATTTTACAGGTTTCTGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
259 GAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
1214847 TTGAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
1214912 AAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
389 AAAATACAAGGATCACGTCTACC-AGTTTGGCTCCAAAACTCCTTCCAGAAAAATTTTAAAAAAT
* * * * *
1214977 CCCAAACCGTAAAAAGTTT-TAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCTTGAAACTT
453 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTT
* * * ** **
1215041 CACGTGAAGGCTTAAGGGACCCTTGTCTGAATTTACAAGCCACAAAAATGGTGTTGGCACATAGA
518 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAGA
*
1215106 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCGTCCCGTCTCT
583 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
1215171 CTGGCCGGTGTAGTGCACGCCCGCCCGTCCGCCCTCTCATTTCGTCGGTTAGCTTAGGCATAAGG
648 CTGGCCGGCGTAGTGCCCGCCC-CCCG-CCGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * *
1215236 AGTTCATTCTCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGTAGCAAGATCGGTAGCATGCAG
711 AGTTCATTC-CAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAG
* * *
1215301 AGGGGGACCTGACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGC
775 AGGGGGACC-GACCGATCCTCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
1215366 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAA
839 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * *
1215413 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA-GGTTGCTACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
*
1215477 CTCGGGAATGTGCTGGTG
66 CTCGGGCATGTGCTGGTG
1215495 TTGCNNNNNN
Statistics
Matches: 1659, Mismatches: 173, Indels: 61
0.88 0.09 0.03
Matches are distributed among these distances:
880 111 0.07
881 240 0.14
882 141 0.08
883 1 0.00
885 3 0.00
886 1 0.00
887 38 0.02
888 543 0.33
889 385 0.23
890 96 0.06
893 1 0.00
894 99 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (885 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGAACCTGACCGAC
GGCATTGGGGTTCCGATGATCGGGGGGTCGGGGGGTGTGGGCACATGATGCATGATGGGTGCTGG
TACTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAGTTTGGCTCCAAAACTCCTTCCAGAAAAATTTTAAAAAATCCC
GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
GCCGGCGTAGTGCCCGCCCCCCGCCGCCCTCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGG
ACCGACCGATCCTCGGCTTGCGCACCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:1215417 original size:26 final size:26
Alignment explanation
Indices: 1215387--1215439 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1215377 GTTGACTTAG
*
1215387 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
1215413 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
1215439 G
1 G
1215440 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:1216803 original size:46 final size:47
Alignment explanation
Indices: 1216749--1216852 Score: 156
Period size: 46 Copynumber: 2.2 Consensus size: 47
1216739 TACTGCCCCA
*
1216749 ACACCAGGGGCCATCTTGTACCGCATGGTGGTCGAGGCA-ATCGCCC
1 ACACCAGGGGCCATCTGGTACCGCATGGTGGTCGAGGCAGATCGCCC
* * *
1216795 GCACCAGGGGCCATCTGGTGCCGGATGGTGGTCGAGGCAGATCGCCC
1 ACACCAGGGGCCATCTGGTACCGCATGGTGGTCGAGGCAGATCGCCC
1216842 ACACCAAGGGG
1 ACACC-AGGGG
1216853 TCGACATGTG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
46 35 0.69
47 11 0.22
48 5 0.10
ACGTcount: A:0.19, C:0.31, G:0.36, T:0.14
Consensus pattern (47 bp):
ACACCAGGGGCCATCTGGTACCGCATGGTGGTCGAGGCAGATCGCCC
Found at i:1217909 original size:26 final size:26
Alignment explanation
Indices: 1217880--1217932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1217870 GTTGACTTAG
1217880 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1217906 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1217932 G
1 G
1217933 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1219000 original size:26 final size:26
Alignment explanation
Indices: 1218970--1219022 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1218960 GTTGACTTAG
1218970 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1218996 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1219022 G
1 G
1219023 ATTAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1219439 original size:159 final size:157
Alignment explanation
Indices: 1219071--1219500 Score: 427
Period size: 159 Copynumber: 2.7 Consensus size: 157
1219061 GTAAGCAGAA
* * * * * * * *
1219071 GGGGATCGGGTCGATCCCCGACTTGCGCATTCTACCTCTCTGACCAACTGAGCACCCGAATG-TT
1 GGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGACCAGCTCAGCGCCCGCATGCTT
1219135 CGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGCCCCGACAAGACTGAGGG
66 -GTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCC-AGTCTAAGCCCCGACAAGACTGAGGG
* *
1219200 TTGTAGCAACGGGACAGGTAGTACGTAGAG
128 TTGTAGCAACGGGACAGGCAGCACGTAGAG
* * *** * ***
1219230 GGGGA-CTGAGCCAATCTTTGGCTTGCACATTATGCCTCT-TCGATTTGCTCAGCGCCCGCATGC
1 GGGGATC-GGGCCGATCCCCGACTTGCACATTATGCCTCTCT-GACCAGCTCAGCGCCCGCATGC
**
1219293 TTGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCGACCGGA-TCGAG
64 TTGTTTCGTGGGTT-GCTTAGGCATACGGAGTTCATTCCA-GTCTAAGCCCCGACAAGACT-GAG
* * *
1219357 GGTTGTGGCAACGGGACCGGCAGCATGTAGAG
126 GGTTGTAGCAACGGGACAGGCAGCACGTAGAG
* * ** * * *
1219389 GGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGGCCGGCTCAATGCCTGCACGCTC
1 GGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGACCAGCTCAGCGCCCGCATGCTT
* * * *
1219454 ATTTCGTTGGTTGACGTAGGCATATGGAGTTCATTCCCAGTCTAAGC
66 GTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATT-CCAGTCTAAGC
1219501 ATACGGAGTT
Statistics
Matches: 218, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
158 5 0.02
159 206 0.94
160 7 0.03
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GGGGATCGGGCCGATCCCCGACTTGCACATTATGCCTCTCTGACCAGCTCAGCGCCCGCATGCTT
GTTTCGTGGGTTGCTTAGGCATACGGAGTTCATTCCAGTCTAAGCCCCGACAAGACTGAGGGTTG
TAGCAACGGGACAGGCAGCACGTAGAG
Found at i:1219509 original size:26 final size:26
Alignment explanation
Indices: 1219473--1219525 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1219463 GTTGACGTAG
* *
1219473 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1219499 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1219525 G
1 G
1219526 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1222611 original size:45 final size:45
Alignment explanation
Indices: 1222530--1222690 Score: 187
Period size: 45 Copynumber: 3.6 Consensus size: 45
1222520 CCGGGCCTGG
* * *
1222530 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCATGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * *
1222575 GCATGTGCCGATGGTGTTCGATGCAACCACCTGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * *
1222620 TCTTGTGCCGATGGTGGTCAAGGCAACCACCCGCATCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * *
1222665 GCTTGTGTCGATGGCGGTTGAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
1222691 GTGCCCGTAC
Statistics
Matches: 96, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
Found at i:1223669 original size:26 final size:26
Alignment explanation
Indices: 1223633--1223685 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1223623 GTTGACTTAG
1223633 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1223659 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1223685 G
1 G
1223686 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1224017 original size:26 final size:26
Alignment explanation
Indices: 1223988--1224040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1223978 GTTAACTTAG
1223988 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1224014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1224040 G
1 G
1224041 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1231613 original size:170 final size:170
Alignment explanation
Indices: 1231312--1231663 Score: 433
Period size: 170 Copynumber: 2.1 Consensus size: 170
1231302 TATAGTGTGC
* * * *
1231312 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGATAGCAGGACCCGCAGCAGGATCGACAGCA
1 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACAGGACCAGCAGCAGGACCGACAGCA
* * * *
1231377 TGCAGAGGGGACTAGGTCGATCTCTGGCTTGCGCATCCTGCCCCTTTCGCTGGCTGAGCACCCGC
66 TGCAGAGGGGACCAGGCCGATCTCTGGCTTGCGCATCCTACCCCTCTCGCTGGCTGAGCACCCGC
*
1231442 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
131 ACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
1231482 TCCCAGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGACCGACAGCA
1 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACAGGACCAGCAGCAGGACCGACAGCA
* * * * * *
1231547 TGCA-AGGGGGACCGGGCCGATC-CTCGGCTTGCGCATTCTACCTCTCT-GGTCGGTTGAGCCCC
66 TGCAGA-GGGGACCAGGCCGATCTCT-GGCTTGCGCATCCTACCCCTCTCGCT-GGCTGAGCACC
* * *
1231609 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT
128 CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1231652 T-CCATGTCTAAG
1 TCCCA-GTCTAAG
1231664 CCCCAGCCAG
Statistics
Matches: 155, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
169 8 0.05
170 147 0.95
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (170 bp):
TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACAGGACCAGCAGCAGGACCGACAGCA
TGCAGAGGGGACCAGGCCGATCTCTGGCTTGCGCATCCTACCCCTCTCGCTGGCTGAGCACCCGC
ACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
Found at i:1231679 original size:170 final size:170
Alignment explanation
Indices: 1231312--1231704 Score: 409
Period size: 170 Copynumber: 2.3 Consensus size: 170
1231302 TATAGTGTGC
* * * * * ** * * *
1231312 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGATAGCAGGACCCGCAGCAGGATCGACAGCA
1 TCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGACCGACAGCA
* * * *
1231377 TGCAGAGGGGACTAGGTCGATCTCTGGCTTGCGCATCCTGCCCCTTTCGCTGGCTGAGCACCCGC
66 TGCAGAGGGGACCAGGCCGATCTCTGGCTTGCGCATCCTACCCCTCTCGCTGGCTGAGCACCCGC
*
1231442 ACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
131 ACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
*** **
1231482 TCCCAGTCTAAGATTGGACTGGACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGACCGACAGCA
1 TCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGACCGACAGCA
* * * * * *
1231547 TGCA-AGGGGGACCGGGCCGATC-CTCGGCTTGCGCATTCTACCTCTCT-GGTCGGTTGAGCCCC
66 TGCAGA-GGGGACCAGGCCGATCTCT-GGCTTGCGCATCCTACCCCTCTCGCT-GGCTGAGCACC
* * *
1231609 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATATGGAGTTCAT
128 CGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
1231652 T-CCATGTCTAAGCCCCAG-CCAGACCGAGGGTTGTGGTAGCAGGACTAGCAGCA
1 TCCCA-GTCTAAG-ACCAGACCAGACCGAGGGTTGTGGCAACAGGACCAGCAGCA
1231705 CACAGAGGGG
Statistics
Matches: 186, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
169 8 0.04
170 177 0.95
171 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.21
Consensus pattern (170 bp):
TCCCAGTCTAAGACCAGACCAGACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGACCGACAGCA
TGCAGAGGGGACCAGGCCGATCTCTGGCTTGCGCATCCTACCCCTCTCGCTGGCTGAGCACCCGC
ACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
Found at i:1232392 original size:90 final size:89
Alignment explanation
Indices: 1232238--1232402 Score: 215
Period size: 90 Copynumber: 1.8 Consensus size: 89
1232228 CGTGTGGATT
* * * * * *
1232238 GTGGTCAAGGCAACCGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCGATGCAACTGCCCG
1 GTGGTCAAGACAACCGCCCACACCAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCCCG
*
1232303 CAGCAGAGGCCATCTTATGCCGATA
66 CACCAG-GGCCATCTTATGCCGATA
* * *
1232328 GTGGTCAAGACAATCGCCCACACCAAGGG-CCGGCATGTGCCGATGGTGATGGAGGCAACCGCCC
1 GTGGTCAAGACAACCGCCCACACC-AGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCCC
1232392 GCACCAGGGCC
65 GCACCAGGGCC
1232403 TAGCTTGTGT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
89 4 0.06
90 56 0.88
91 4 0.06
ACGTcount: A:0.21, C:0.33, G:0.32, T:0.14
Consensus pattern (89 bp):
GTGGTCAAGACAACCGCCCACACCAGGGCCCAGCATGTGCCGATGGTGATCGAGGCAACCGCCCG
CACCAGGGCCATCTTATGCCGATA
Found at i:1232430 original size:45 final size:44
Alignment explanation
Indices: 1232245--1232418 Score: 159
Period size: 45 Copynumber: 3.9 Consensus size: 44
1232235 ATTGTGGTCA
* *
1232245 AGGCAACCGCCCGCACCAGGGCCCAGCGTGTGCCGATGGTGTTCG
1 AGGCAACCGCCCGCACCAGGG-CCAGCTTGTGCCGATGGTGATCG
* * * * * * * *
1232290 ATGCAACTGCCCGCAGCAGAGGCCATCTTATGCCGATAGTGGTCA
1 AGGCAACCGCCCGCACCAG-GGCCAGCTTGTGCCGATGGTGATCG
* * * * * *
1232335 AGACAATCGCCCACACCAAGGGCCGGCATGTGCCGATGGTGATGG
1 AGGCAACCGCCCGCACC-AGGGCCAGCTTGTGCCGATGGTGATCG
*
1232380 AGGCAACCGCCCGCACCAGGGCCTAGCTTGTGTCGATGG
1 AGGCAACCGCCCGCACCAGGGCC-AGCTTGTGCCGATGG
1232419 CAGTCGAGGC
Statistics
Matches: 97, Mismatches: 29, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
44 6 0.06
45 87 0.90
46 4 0.04
ACGTcount: A:0.21, C:0.32, G:0.32, T:0.16
Consensus pattern (44 bp):
AGGCAACCGCCCGCACCAGGGCCAGCTTGTGCCGATGGTGATCG
Found at i:1232491 original size:13 final size:13
Alignment explanation
Indices: 1232473--1232497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1232463 ATGGTCGATG
1232473 CATGCGCCATCAC
1 CATGCGCCATCAC
1232486 CATGCGCCATCA
1 CATGCGCCATCA
1232498 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.44, G:0.16, T:0.16
Consensus pattern (13 bp):
CATGCGCCATCAC
Found at i:1233400 original size:26 final size:26
Alignment explanation
Indices: 1233371--1233426 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
1233361 TGGGTTGACT
1233371 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
*
1233397 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
1233423 TAAG
1 TAAG
1233427 ATTGGATCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:1233578 original size:197 final size:195
Alignment explanation
Indices: 1233238--1233622 Score: 511
Period size: 197 Copynumber: 2.0 Consensus size: 195
1233228 AAGATCAGAC
* * * * * * *
1233238 CGGACCGAGGGTTTCGGTAGTAGGACCCACAGCGGGATCGACAGCACATAGAGGGGATCGGGTCG
1 CGGACCGAGGGTTGCGGTAGCAGGACCCACAACAGGATCGACAGCACACAGAGGGGACCGGGCCG
* * * * *
1233303 ATCCCTGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTG
66 ATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAACACCAGCACGCTCGTTTTATGGGTTG
1233368 ACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
131 ACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGATTGGA
1233433 T
195 T
* * *
1233434 CGGACTGAGGGTTGCGGTAGCAGGA-CCAGCAACAGGATCGACAGCACGCAGGGAGGGACCGGGC
1 CGGACCGAGGGTTGCGGTAGCAGGACCCA-CAACAGGATCGACAGCACACAGAG-GGGACCGGGC
* ** * * * *
1233498 CTATCCCCGGCTTGTGCATTCTGGCTCTCTGGTCGGTTGAACGCCAGCACGCTCGTTTTATGGGT
64 CGATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAACACCAGCACGCTCGTTTTATGGGT
* * *
1233563 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATCCCAGTCTAAG
129 TGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAG
1233623 CATACGGAGT
Statistics
Matches: 162, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
195 3 0.02
196 53 0.33
197 106 0.65
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (195 bp):
CGGACCGAGGGTTGCGGTAGCAGGACCCACAACAGGATCGACAGCACACAGAGGGGACCGGGCCG
ATCCCCGGCTTGCACATCCTGCCTCTCTGGTCGGCTGAACACCAGCACGCTCGTTTTATGGGTTG
ACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATCCCAGTCTAAGATTGGAT
Found at i:1233620 original size:25 final size:26
Alignment explanation
Indices: 1233571--1233647 Score: 138
Period size: 25 Copynumber: 3.0 Consensus size: 26
1233561 GTTGACTTAG
1233571 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1233597 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1233622 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1233648 TATCAAACCA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 24 0.50
26 24 0.50
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1234001 original size:26 final size:26
Alignment explanation
Indices: 1233951--1234001 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1233941 TGACTTAGGA
* *
1233951 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAATATAAGC
* *
1233977 ATACCGAGTTCATTCTCAATATAAG
1 ATACAGAGTTCATTCCCAATATAAG
1234002 ATTGTACCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATATAAGC
Found at i:1235619 original size:26 final size:26
Alignment explanation
Indices: 1235588--1235640 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1235578 GTTGACTTAG
*
1235588 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1235614 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1235640 G
1 G
1235641 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1235979 original size:25 final size:25
Alignment explanation
Indices: 1235949--1236019 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
1235939 TTAGGCATAT
1235949 GGAGTTCATTCCCAATCTAAGCATC
1 GGAGTTCATTCCCAATCTAAGCATC
*
1235974 GGAGTTCATTCCCAGTCTAAGCATC
1 GGAGTTCATTCCCAATCTAAGCATC
*
1235999 GAAGTTCATTCCCAATCTAAG
1 GGAGTTCATTCCCAATCTAAG
1236020 ATTGGACCGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (25 bp):
GGAGTTCATTCCCAATCTAAGCATC
Found at i:1236506 original size:44 final size:45
Alignment explanation
Indices: 1236401--1236550 Score: 158
Period size: 45 Copynumber: 3.4 Consensus size: 45
1236391 GCATGTGTCA
*** * * * * *
1236401 ATGGTGGTCGAGGCAACTAACCGCACTACGGCCAAGCATGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCG
* * *
1236446 ATGGTGGTCGATGCAACCGCCCACACCAGGGGCCATCTTGTG-CG
1 ATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCG
**
1236490 ATGGTGGTCGAGGCAACCGCCTGCACCAGGGCCCAGCTTGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCG
**
1236535 ATGGCAGTCGAGGCAA
1 ATGGTGGTCGAGGCAA
1236551 GTGCCCGTAC
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 39 0.45
45 47 0.55
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCG
Found at i:1237488 original size:45 final size:45
Alignment explanation
Indices: 1237354--1237504 Score: 135
Period size: 45 Copynumber: 3.4 Consensus size: 45
1237344 ACATGTGCTA
* * * * *
1237354 ATGGTGGTCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCCG
1 ATGGTGGTCGAGGCAACTGCCCGCACTAGGGCCCAGCTTGTGCCG
* * * * * *
1237399 ATTGTGTTCGATGCAACCT-CCCGTA-TCAGGGGCCATCTTGTGCCG
1 ATGGTGGTCGAGGCAA-CTGCCCGCACT-AGGGCCCAGCTTGTGCCG
* *
1237444 ATGGTGGTCGAGGCAACTGCCCACACTAGGGCCCAGCTTATGCCG
1 ATGGTGGTCGAGGCAACTGCCCGCACTAGGGCCCAGCTTGTGCCG
* *
1237489 ATGGTGATCGAAGCAA
1 ATGGTGGTCGAGGCAA
1237505 GTGCTCGTAC
Statistics
Matches: 81, Mismatches: 21, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
44 2 0.02
45 77 0.95
46 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACTGCCCGCACTAGGGCCCAGCTTGTGCCG
Found at i:1238477 original size:26 final size:26
Alignment explanation
Indices: 1238447--1238499 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1238437 GTTGACTTAG
1238447 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
1238473 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1238499 G
1 G
1238500 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1238839 original size:26 final size:26
Alignment explanation
Indices: 1238803--1238855 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1238793 GTTGACTTAG
1238803 GCATACGGAGTTCATTTCC-AGTCTAA
1 GCATACGGAGTTCA-TTCCAAGTCTAA
*
1238829 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1238855 G
1 G
1238856 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1239442 original size:45 final size:45
Alignment explanation
Indices: 1239304--1239456 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
1239294 CGACATGTTT
* * * * *
1239304 CGATGGTGGTCGAGGCAACTGCCCACACCACGGCCCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACAAGGGCCCAGCTTGTGC
* * * * * *
1239349 CGATGGTGTTTGATGCAACCGCTCGCACCAAGGG-CCATCTTGTAC
1 CGATGGTGGTCGAGGCAACCGCCCGCA-CAAGGGCCCAGCTTGTGC
* * *
1239394 CGATGGTGGTCGAGGCAACCACCCGCACTAGGGCCCAGCTTATGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACAAGGGCCCAGCTTGTGC
* * *
1239439 CGATAGCGATCGAGGCAA
1 CGATGGTGGTCGAGGCAA
1239457 GTGCCGTACC
Statistics
Matches: 83, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
44 5 0.06
45 74 0.89
46 4 0.05
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAACCGCCCGCACAAGGGCCCAGCTTGTGC
Found at i:1240429 original size:25 final size:25
Alignment explanation
Indices: 1240395--1240442 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
1240385 GTTAACTTAG
1240395 GCATACGGAGTTC-TTCCCTAGTCAA
1 GCATACGGAGTTCATTCCC-AGTCAA
1240420 GCATACGGAGTTCATTCCCAGTC
1 GCATACGGAGTTCATTCCCAGTC
1240443 TAAGATCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:1246467 original size:26 final size:26
Alignment explanation
Indices: 1246431--1246483 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1246421 GTTGACATAG
*
1246431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1246457 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1246483 G
1 G
1246484 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1246642 original size:26 final size:26
Alignment explanation
Indices: 1246606--1246656 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1246596 TTGACTTAGG
*
1246606 CATACAGAGTTCATCCCCAGTCTAAA
1 CATACAAAGTTCATCCCCAGTCTAAA
*
1246632 CATACAAAGTTCATTCCCAGTCTAA
1 CATACAAAGTTCATCCCCAGTCTAA
1246657 GATCGAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.29, G:0.10, T:0.25
Consensus pattern (26 bp):
CATACAAAGTTCATCCCCAGTCTAAA
Found at i:1254389 original size:26 final size:26
Alignment explanation
Indices: 1254353--1254405 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1254343 GTTGACTTAG
1254353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1254379 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1254405 G
1 G
1254406 ATCGAACCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1255009 original size:90 final size:90
Alignment explanation
Indices: 1254847--1255049 Score: 239
Period size: 90 Copynumber: 2.3 Consensus size: 90
1254837 GGGCTCGGCA
* * * * ** * *
1254847 TGTGTCGATGGTGGTCGAGGCAATCACCCTCACCACGGCCCAGCAAGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGCCCAGCAAGTGCCAATCATGATCGAGG
** *
1254912 CAACCGCCCGTACCAGAGG-CCATCT
66 CAACCGCCCACACCAG-GGCCCAGCT
* * *
1254937 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGGCACA-TGCCAATCATGATCGAG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGCCCAGCA-AGTGCCAATCATGATCGAG
1255001 GCAACCGCCCACACCAGGGCCCAGCT
65 GCAACCGCCCACACCAGGGCCCAGCT
*
1255027 TGTGCCGATGGCGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1255050 GTGCCCATAC
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
89 2 0.02
90 93 0.97
91 1 0.01
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.16
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGCCCAGCAAGTGCCAATCATGATCGAGG
CAACCGCCCACACCAGGGCCCAGCT
Found at i:1255045 original size:45 final size:44
Alignment explanation
Indices: 1254844--1255049 Score: 178
Period size: 45 Copynumber: 4.6 Consensus size: 44
1254834 CTGGGGCTCG
* * * * *
1254844 GCATGTGTCGATGGTGGTCGAGGCAATCACCCTCACCACGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCA
* * * *
1254889 GCAAGTGCCGATGGTGTTCGATGCAACCGCCCGTACCAGAGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAG-GGCCA
* * * *
1254934 TCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCG
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCA
** * ** * *
1254979 GCACATGCCAATCATGATCGAGGCAACCGCCCACACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGG-CCA
* *
1255024 GCTTGTGCCGATGGCGGTCGAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
1255050 GTGCCCATAC
Statistics
Matches: 122, Mismatches: 36, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
44 5 0.04
45 115 0.94
46 2 0.02
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.16
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCA
Found at i:1256019 original size:26 final size:26
Alignment explanation
Indices: 1255989--1256041 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1255979 GTTGACTTAG
* *
1255989 GCATATGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCAAATCTAA
*
1256015 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGGAGTTCATCCCAAATCTAA
1256041 G
1 G
1256042 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAATCTAA
Found at i:1257013 original size:26 final size:26
Alignment explanation
Indices: 1256977--1257029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1256967 GTTGACTTAG
*
1256977 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCTATCTAA
1257003 GCATACGGAGTTCATCCCCTATCTAA
1 GCATACGGAGTTCATCCCCTATCTAA
1257029 G
1 G
1257030 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCTATCTAA
Found at i:1257868 original size:45 final size:45
Alignment explanation
Indices: 1257798--1257957 Score: 160
Period size: 45 Copynumber: 3.6 Consensus size: 45
1257788 CGGGGCTTGA
* * * *
1257798 CATGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCATGACCCAG
1 CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG
* * * * * *
1257843 CATGTGCCGATGGTATTCGATGCAACTGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG
* * * *
1257888 CTTATGCCGATGGTGGTT-GAGGCAACCACCAGCACCAAGGCCCAG
1 CATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAAGGCCCAG
* *
1257933 CTTGTGCCGATGGTGGTCGAGGCAA
1 CATGTGCCGATGGTGTTCGAGGCAA
1257958 GTGCCCATAC
Statistics
Matches: 92, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
44 2 0.02
45 88 0.96
46 2 0.02
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCCAG
Found at i:1259293 original size:26 final size:26
Alignment explanation
Indices: 1259257--1259309 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1259247 GTTGACTTAG
* *
1259257 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1259283 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1259309 G
1 G
1259310 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1259561 original size:157 final size:157
Alignment explanation
Indices: 1259382--1259756 Score: 493
Period size: 157 Copynumber: 2.4 Consensus size: 157
1259372 CTCCGATCGG
1259382 TTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCGGTCTAAGC
1 TTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCGGTCTAAGC
* * * * *
1259447 CCCAA-CTGGATCGAGGGACCCG-AGTGGGATCGACAGCACGTAGAGGGGGATCGAGTTGATCCT
66 CCCAATC-GGATCGAGGGACCCGCAGCGAGATCGACAGCACGCAGAGAGGGATCGAGTCGATCCT
* *
1259510 CAACTTGTGCATCCTGTCTCTCTAACCGA
130 CAACTTGCGCATCCT-ACTCTCTAACCGA
* * * * *
1259539 TTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTTGGTCTAAGC
1 TTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCGGTCTAAGC
* *
1259604 CCCAATCGGATCGAGGGACCCGCAGCGAGATCGACAGCACGCAGAGAGGGATCGGGTCGATCTTC
66 CCCAATCGGATCGAGGGACCCGCAGCGAGATCGACAGCACGCAGAGAGGGATCGAGTCGATCCTC
* * * * *
1259669 AGCTTGCGCATTCTACTCTCTGATCGG
131 AACTTGCGCATCCTACTCTCTAACCGA
* * ** * *
1259696 CTGAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACTTAGTGCATTCCCGGTCT
1 TTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCGGTCT
1259757 CGACCAACCA
Statistics
Matches: 187, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
157 140 0.75
158 47 0.25
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.26
Consensus pattern (157 bp):
TTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCTCGGTCTAAGC
CCCAATCGGATCGAGGGACCCGCAGCGAGATCGACAGCACGCAGAGAGGGATCGAGTCGATCCTC
AACTTGCGCATCCTACTCTCTAACCGA
Found at i:1260157 original size:23 final size:23
Alignment explanation
Indices: 1260131--1260184 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
1260121 AAGGGTAGCC
1260131 TGTGCCATCACCATGCACCATCA
1 TGTGCCATCACCATGCACCATCA
1260154 TGTGCCATCACCATGCACCATCA
1 TGTGCCATCACCATGCACCATCA
1260177 TGTGCCAT
1 TGTGCCAT
1260185 TGATGGTCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.24, C:0.37, G:0.15, T:0.24
Consensus pattern (23 bp):
TGTGCCATCACCATGCACCATCA
Found at i:1262086 original size:45 final size:44
Alignment explanation
Indices: 1261945--1262089 Score: 114
Period size: 45 Copynumber: 3.2 Consensus size: 44
1261935 CGGCCCAACA
* * * * ** * *
1261945 TGTGCCGATGGTGTTCGATGCAACCACCCGCACCAGAGGCCATCT
1 TGTGCCGATGGCGGTCGAGGCAACTACCCATACAAG-GGCCAGCT
* * * * *
1261990 TGTGTCGATGGTGGTCGAGGCAACTGCCCGTACGAGGGCCCAGCT
1 TGTGCCGATGGCGGTCGAGGCAACTACCCATACAAGGG-CCAGCT
1262035 TGTGCCGATGGCGGTCGAGGCAACTACCCATACCAAAGGG-CAGCAT
1 TGTGCCGATGGCGGTCGAGGCAACTACCCATA-C-AAGGGCCAGC-T
1262081 T-TGCCGATG
1 TGTGCCGATG
1262090 ATGGTGATGC
Statistics
Matches: 83, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
44 2 0.02
45 74 0.89
46 3 0.04
47 4 0.05
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (44 bp):
TGTGCCGATGGCGGTCGAGGCAACTACCCATACAAGGGCCAGCT
Found at i:1262628 original size:26 final size:26
Alignment explanation
Indices: 1262570--1262629 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
1262560 ACTCCTTCTA
* **
1262570 AAAAAATTTTAAAAAATCTTGAACCAT
1 AAAAAA-TTTAAAAAATCATGAAAAAT
*
1262597 AAAAAATTTCAAAAATCATGAAAAAT
1 AAAAAATTTAAAAAATCATGAAAAAT
*
1262623 AGAAAAT
1 AAAAAAT
1262630 GGGTCATCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.25
Consensus pattern (26 bp):
AAAAAATTTAAAAAATCATGAAAAAT
Found at i:1263208 original size:197 final size:196
Alignment explanation
Indices: 1262849--1263212 Score: 439
Period size: 197 Copynumber: 1.9 Consensus size: 196
1262839 ACGCTTCCAA
** * **
1262849 TCTAAGATCGGATCGGACCGAGGGTTACGGTAGCAGGACCCGCAGCGAGATCGACAGCATGCAGA
1 TCTAAGATCAAATCGGACCGAGGGTTACGGTAGCAGGACCAGCAGCGAGATCGACAGCACACAGA
** * * ** **
1262914 GAAGATCGGGTCGATCCACAGCTTGTGCATGCTGCCTCTCTGGCCGGCTAAGTGCCTGCATGCTC
66 GAAGATCGGACCGATCCACAGCTTGCGCATGCTGCCTCTCTGGCCGACTAAGTGCCCACACACTC
1262979 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGGTTAAGCGTACGGAGTTCATTCCCA
131 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGGTTAAGCGTACGGAGTTCATTCCCA
1263044 G
196 G
* *
1263045 TCTAAGATCAAATCGGACCGAGGGTTACGGTAGTAGGACCAGCAGC-AGGATCGACAGCACATAG
1 TCTAAGATCAAATCGGACCGAGGGTTACGGTAGCAGGACCAGCAGCGA-GATCGACAGCACACA-
* ** * * * *
1263109 GTGGGGA-CTGGACCGATCCCCAGCTTGCGCATTCTGCCTCT-TCGGTCGACTGAGTGCCCACAC
64 GAGAAGATC-GGACCGATCCACAGCTTGCGCATGCTGCCTCTCT-GGCCGACTAAGTGCCCACAC
* *
1263172 ACTCGTTTCGTGGGTTGGA-TTAGGCATACGGAGTTCATTCC
127 ACTCGTTTCATGGGTT-GACTTAGGCATACAGAGTTCATTCC
1263213 ATGTCTAAGC
Statistics
Matches: 139, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
195 1 0.01
196 56 0.40
197 80 0.58
198 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (196 bp):
TCTAAGATCAAATCGGACCGAGGGTTACGGTAGCAGGACCAGCAGCGAGATCGACAGCACACAGA
GAAGATCGGACCGATCCACAGCTTGCGCATGCTGCCTCTCTGGCCGACTAAGTGCCCACACACTC
GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGGTTAAGCGTACGGAGTTCATTCCCA
G
Found at i:1263390 original size:26 final size:26
Alignment explanation
Indices: 1263354--1263406 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1263344 GTTGACTTAG
1263354 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1263380 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1263406 G
1 G
1263407 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1263504 original size:162 final size:160
Alignment explanation
Indices: 1263258--1263863 Score: 481
Period size: 162 Copynumber: 3.8 Consensus size: 160
1263248 ACGGGATCGA
* * * * * *
1263258 CAGCACGCAGAGGGGGATCAGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAGT
1 CAGCACGCAGAGGGGGATCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCAGCTCAGC
** * * * *
1263323 GCCCGCACATTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAG
66 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
1263388 AGTTCATTCCCAGTCTAAGATCAGATCGGTAG
131 AGTTCATT-CCAGTCTAAGATCAGATC-GTAG
* * * * * *
1263420 CAGCATGCAGAGGGGGACCAGGCCGATCCCTGACTTGCGCATTCTGCCTCTCCGGTCAACTGAGC
1 CAGCACGCAGAGGGGGATCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCAGCTCAGC
* * * * * * *
1263485 TCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTTATT-CCATTCCTAAGCCTTAG
66 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAAG-CATA-
* * * *
1263549 CCG-GATCGAGGTT---GTGGT-AG--CGAGAT--TAA
128 CAGAGTTC-A--TTCCAGT-CTAAGATC-AGATCGTAG
* * * * * *
1263578 CAGCACGCAGAGAGGGATCGGGCCGATCCC-CAGCTTGAGCATTATGCCTCTCTG-GCAGGCTCA
1 CAGCACGCAGAGGGGGATCAGGCCGATCCCTGA-CTTGCGCATTATGCCTCTCCGATCA-GCTCA
* * **
1263641 ACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAAACTAAGCATAC
64 GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
1263706 AGAGTTCATTTCCAGTCTAAGAAT-GGATCGACAG
129 AGAGTTCA-TTCCAGTCTAAG-ATCAGATCG-TAG
* * ** * * * *
1263740 TAGCACGCAGAGGGGGATCAGGCCGAT-CCTCGGCTTGCACGCCCTA--CCTCTTCGATCGGTTG
1 CAGCACGCAGAGGGGGATCAGGCCGATCCCT-GACTTG--CGCATTATGCCTCTCCGATCAGCTC
1263802 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC-GATCTAAGC
63 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGC
1263864 CCCAACCGAA
Statistics
Matches: 345, Mismatches: 71, Indels: 56
0.73 0.15 0.12
Matches are distributed among these distances:
155 2 0.01
156 3 0.01
157 10 0.03
158 102 0.30
159 6 0.02
160 1 0.00
161 10 0.03
162 194 0.56
163 8 0.02
164 7 0.02
166 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (160 bp):
CAGCACGCAGAGGGGGATCAGGCCGATCCCTGACTTGCGCATTATGCCTCTCCGATCAGCTCAGC
GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
AGTTCATTCCAGTCTAAGATCAGATCGTAG
Found at i:1263704 original size:320 final size:321
Alignment explanation
Indices: 1263132--1263853 Score: 880
Period size: 320 Copynumber: 2.3 Consensus size: 321
1263122 CGATCCCCAG
* * *
1263132 CTTGCGCATTCTGCCTCTTCGGTCGACTGAG-TGCCCACACACTCGTTTCGTGGGTTGGATTAGG
1 CTTGCGCATTCTGCCTCTTCGGTCGACTGAGCT-CCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
* * *
1263196 CATACGGAGTTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGCAACGGGATCGACAG
65 CATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGAGATCAACAG
* * ** * **
1263261 CACGCAGAGGGGGATCAGGCTGATCCCTGGCTTACGCATTATGCCTCTCCGACCGGCTCAGTGCC
130 CACGCAGAGAGGGATCAGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACAGGCTCAACGCC
* * * **
1263326 CGCACATTCATTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGT
195 CGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAAACTAAGCATACAGAGT
** *
1263391 TCATTCCCAGTCTAAG-ATCAGATCGGTAGCAGCATGCAGAGGGGGACCAGGCCGATCC-CTGA
260 TCATTCCCAGTCTAAGAAT-AGATCGACAGCAGCACGCAGAGGGGGACCAGGCCGATCCTC-GA
* *
1263453 CTTGCGCATTCTGCCTCTCCGGTCAACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1 CTTGCGCATTCTGCCTCTTCGGTCGACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
* * * * * * *
1263518 ATATGGAGTTTATTCCAT-TCCTAAGCCTTAGCCGGATCGA-GGTTGTGGTAGCGAGATTAACAG
66 ATACGGAGTTCATTCCATGT-CTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGAGATCAACAG
* * *
1263581 CACGCAGAGAGGGATCGGGCCGATCCCCAGCTTGA-GCATTATGCCTCTCTGGCAGGCTCAACGC
130 CACGCAGAGAGGGATCAGGCCGATCCCCAGCTT-ACGCATTATGCCTCTCCGACAGGCTCAACGC
* * **
1263645 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAAACTAAGCATACAGAG
194 CCGCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAAACTAAGCATACAGAG
* * * * *
1263710 TTCATTTCCAGTCTAAGAATGGATCGACAGTAGCACGCAGAGGGGGATCAGGCCGATCCTCGG
259 TTCATTCCCAGTCTAAGAATAGATCGACAGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGA
* *** * * ** * * *
1263773 CTTGCACGCCCTACCTCTTCGATCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
1 CTTGCGCATTCTGCCTCTTCGGTCGACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
1263838 ATACGGAGTTCATTCC
66 ATACGGAGTTCATTCC
1263854 CGATCTAAGC
Statistics
Matches: 339, Mismatches: 57, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
320 243 0.72
321 95 0.28
322 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (321 bp):
CTTGCGCATTCTGCCTCTTCGGTCGACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGC
ATACGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAACGAGATCAACAGC
ACGCAGAGAGGGATCAGGCCGATCCCCAGCTTACGCATTATGCCTCTCCGACAGGCTCAACGCCC
GCACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAAACTAAGCATACAGAGTT
CATTCCCAGTCTAAGAATAGATCGACAGCAGCACGCAGAGGGGGACCAGGCCGATCCTCGA
Found at i:1265332 original size:26 final size:26
Alignment explanation
Indices: 1265302--1265352 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1265292 GTTGACTTAG
1265302 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1265328 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
1265353 GGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1266252 original size:45 final size:45
Alignment explanation
Indices: 1266159--1266342 Score: 181
Period size: 45 Copynumber: 4.1 Consensus size: 45
1266149 ACATGTACCT
* * *
1266159 ATGGTGGTCGAGGCAACCGCCCGTACCATGGCCCAGCATGT-ACTG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGTC-G
* * * * *
1266204 ATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGTCG
* ** * *
1266249 ATGGTGGTCGAGGCAATCGCCCGCACCAACGACCGGCATGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGTCG
* * ** * *
1266294 ATGGTGATCGAGGTAACCGCTTGCACCAGGGCCCAGCTTATGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGTCG
1266339 ATGG
1 ATGG
1266343 CGATCAAGGC
Statistics
Matches: 110, Mismatches: 28, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
45 109 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGTCG
Found at i:1266312 original size:90 final size:90
Alignment explanation
Indices: 1266159--1266342 Score: 217
Period size: 90 Copynumber: 2.0 Consensus size: 90
1266149 ACATGTACCT
* ** * * *
1266159 ATGGTGGTCGAGGCAACCGCCCGTACCATGGCCCAGCATGTACTGATGGTGTTCGATGCAACCGC
1 ATGGTGGTCGAGGCAACCGCCCGCACCAACGACCAGCATGTACTGATGGTGATCGAGGCAACCGC
* * *
1266224 CCGCACCAGGGGCCATCTTGTGTCG
66 CCGCACCAGGGCCCAGCTTATGTCG
* * * *
1266249 ATGGTGGTCGAGGCAATCGCCCGCACCAACGACCGGCATGT-GTCGATGGTGATCGAGGTAACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAACGACCAGCATGTACT-GATGGTGATCGAGGCAACCG
**
1266313 CTTGCACCAGGGCCCAGCTTATGTCG
65 CCCGCACCAGGGCCCAGCTTATGTCG
1266339 ATGG
1 ATGG
1266343 CGATCAAGGC
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
89 1 0.01
90 77 0.99
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCAACGACCAGCATGTACTGATGGTGATCGAGGCAACCGC
CCGCACCAGGGCCCAGCTTATGTCG
Found at i:1266367 original size:90 final size:90
Alignment explanation
Indices: 1266203--1266367 Score: 197
Period size: 90 Copynumber: 1.8 Consensus size: 90
1266193 AGCATGTACT
* * * * * * * *
1266203 GATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAATCG
1 GATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAGCTTATGTCGATGGCGATCAAGGCAATCG
*
1266268 CCCGCACCAACGACCGGCATGTGTC
66 CCCACACCAACGACCGGCATGTGTC
* **
1266293 GATGGTGATCGAGGTAACCGCTTGCACCAGGGCCCAGCTTATGTCGATGGCGATCAAGGCAAGT-
1 GATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAGCTTATGTCGATGGCGATCAAGGCAA-TC
*
1266357 GCCCATACCAA
65 GCCCACACCAA
1266368 AGGGCAGCCC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
90 60 0.98
91 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (90 bp):
GATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAGCTTATGTCGATGGCGATCAAGGCAATCG
CCCACACCAACGACCGGCATGTGTC
Found at i:1267214 original size:26 final size:26
Alignment explanation
Indices: 1267177--1267229 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1267167 GTTGACTTAG
*
1267177 GCATACAGAGTTCT-TCCCCAGTCTAA
1 GCATACAAAGTT-TATCCCCAGTCTAA
*
1267203 GCATACAAAGTTTATTCCCAGTCTAA
1 GCATACAAAGTTTATCCCCAGTCTAA
1267229 G
1 G
1267230 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTTATCCCCAGTCTAA
Found at i:1267499 original size:26 final size:26
Alignment explanation
Indices: 1267469--1267519 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1267459 GTTGACTTAG
*
1267469 GCATACGGAGTTCATT-TCTAGTCTAA
1 GCATACAGAGTTCATTCTC-AGTCTAA
1267495 GCATACAGAGTTCATTCTCAGTCTA
1 GCATACAGAGTTCATTCTCAGTCTA
1267520 CGATCAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:1268093 original size:45 final size:43
Alignment explanation
Indices: 1268001--1268164 Score: 130
Period size: 45 Copynumber: 3.7 Consensus size: 43
1267991 GCACCATGAC
* * * * * * *
1268001 CCAGCTTGTGCCGATGGTGTTTGATGCAACCGCCCGCATCAGGGG
1 CCAGCTTGTG-CGATGGTGGTCGAGGCAATCGCCCACACCA-AGG
*
1268046 CCATCTTGTGTCGATGGTGGTCGAGGCAATCGCCCACACCAACGG
1 CCAGCTTGTG-CGATGGTGGTCGAGGCAATCGCCCACACCAA-GG
* * * * *
1268091 CCAGCATGTGCTGATGATGATCGAGGCAATCGCTCACACCAAAG
1 CCAGCTTGTGC-GATGGTGGTCGAGGCAATCGCCCACACCAAGG
**
1268135 CCTAGCTTGTGCCGATGGCAGTCGAGGCAA
1 CC-AGCTTGTG-CGATGGTGGTCGAGGCAA
1268165 GTGCACCTAC
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 4 0.04
45 90 0.95
46 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (43 bp):
CCAGCTTGTGCGATGGTGGTCGAGGCAATCGCCCACACCAAGG
Found at i:1269771 original size:45 final size:45
Alignment explanation
Indices: 1269634--1269791 Score: 133
Period size: 45 Copynumber: 3.5 Consensus size: 45
1269624 GGGCTTAGCA
* * *
1269634 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCA-TCACGACCCAACT
1 TGTGTCGATGGTGGTTGAGGCAACCGCCCGCACT-AGGGCCCAACT
* * * ** * * *
1269679 TGTGCCGATGGT-GTTCGATGTAACCGCATGCACCAGGGGCCATCT
1 TGTGTCGATGGTGGTT-GAGGCAACCGCCCGCACTAGGGCCCAACT
* *
1269724 TGTGTCGATGGTGGTTGAGGCAACCCCCCGCACTAGGGCCCAGCT
1 TGTGTCGATGGTGGTTGAGGCAACCGCCCGCACTAGGGCCCAACT
* *
1269769 TGTG-CTAATGGCGGTTGAGGCAA
1 TGTGTC-GATGGTGGTTGAGGCAA
1269792 GTACCCGTAC
Statistics
Matches: 87, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
44 3 0.03
45 81 0.93
46 3 0.03
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (45 bp):
TGTGTCGATGGTGGTTGAGGCAACCGCCCGCACTAGGGCCCAACT
Found at i:1270920 original size:46 final size:45
Alignment explanation
Indices: 1270845--1270951 Score: 144
Period size: 46 Copynumber: 2.4 Consensus size: 45
1270835 GGCATGTGTT
* * ** *
1270845 GATGGTGTTCGATGCAACCGCCCACACCAGGGGTCATCTTGTGCC
1 GATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAACTTGTGCC
1270890 -ATTGGTGGTCGAGGCAACCTGCCCACACCAGGGCCCAACTTGTGCC
1 GA-TGGTGGTCGAGGCAACC-GCCCACACCAGGGCCCAACTTGTGCC
1270936 GATGGTGGTCGAGGCA
1 GATGGTGGTCGAGGCA
1270952 GGTGCTCGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
44 1 0.02
45 15 0.28
46 37 0.69
47 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.20
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAACTTGTGCC
Found at i:1272106 original size:45 final size:45
Alignment explanation
Indices: 1272007--1272113 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
1271997 GCATCCTACC
* *
1272007 CCCAGCATGTGCCGATGGTGGTCGAGGGAACCGTCCACACCAGGG
1 CCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGTCCACACCAGGG
** * *
1272052 GTCATCTTGTGCCGATGGTGGTCGAGGCAACCG-CTCGCACCAGGG
1 CCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGTC-CACACCAGGG
*
1272097 CCCAGCTTGTGTCGATG
1 CCCAGCTTGTGCCGATG
1272114 CCAGTCAAGG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.19
Consensus pattern (45 bp):
CCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGTCCACACCAGGG
Found at i:1272979 original size:24 final size:24
Alignment explanation
Indices: 1272947--1273002 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
1272937 CTGAGGGTTG
*
1272947 CGGTAGCAGGACCCATAACGGGAT
1 CGGTAGCAGGACCCATAACAGGAT
*
1272971 CGGTAGCAGGACCCGTAACAGGAT
1 CGGTAGCAGGACCCATAACAGGAT
*
1272995 CGGCAGCA
1 CGGTAGCA
1273003 CGTAGAGGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.34, T:0.11
Consensus pattern (24 bp):
CGGTAGCAGGACCCATAACAGGAT
Found at i:1273143 original size:26 final size:26
Alignment explanation
Indices: 1273093--1273145 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1273083 GTTGACTTAG
*
1273093 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
*
1273119 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
1273145 G
1 G
1273146 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:1273988 original size:45 final size:44
Alignment explanation
Indices: 1273938--1274141 Score: 160
Period size: 45 Copynumber: 4.5 Consensus size: 44
1273928 CAAGGCTCGA
* *
1273938 CATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACAGTCCTG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGGCCTG
* * * *
1273983 CATGTGCCGATGGTGTTCGATGCAATCGCCC-CTACCAGGGGCCAT-
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGC-ACCA-AGGCC-TG
* * * * *
1274028 CTTGTGCTGATGGTGGTCGAGGCAATCGCCCACACCAAGGGCCGG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA-GGCCTG
* * * * * *
1274073 CATATGCCAATGGTGATCGAGGCAACCGCCCGCACTAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG-CCTG
* **
1274118 CTTGTGCCGATGACGGTCGAGGCA
1 CATGTGCCGATGGTGGTCGAGGCA
1274142 GGTGCCTGTA
Statistics
Matches: 124, Mismatches: 29, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
44 3 0.02
45 119 0.96
46 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCTG
Found at i:1274103 original size:90 final size:90
Alignment explanation
Indices: 1273940--1274141 Score: 228
Period size: 90 Copynumber: 2.2 Consensus size: 90
1273930 AGGCTCGACA
* * * * * * * *
1273940 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACAGTCCTGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACAGGCCGGCATATGCCAATGGTGATCGAGG
* * *
1274005 CAATCGCCC-CTACCAGGGGCCATCT
66 CAACCGCCCGC-ACCAGGGCCCAGCT
* *
1274030 TGTGCTGATGGTGGTCGAGGCAATCGCCCACACCA-AGGGCCGGCATATGCCAATGGTGATCGAG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACA-GGCCGGCATATGCCAATGGTGATCGAG
*
1274094 GCAACCGCCCGCACTAGGGCCCAGCT
65 GCAACCGCCCGCACCAGGGCCCAGCT
**
1274120 TGTGCCGATGACGGTCGAGGCA
1 TGTGCCGATGGTGGTCGAGGCA
1274142 GGTGCCTGTA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
89 1 0.01
90 91 0.98
91 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACAGGCCGGCATATGCCAATGGTGATCGAGG
CAACCGCCCGCACCAGGGCCCAGCT
Found at i:1274518 original size:26 final size:26
Alignment explanation
Indices: 1274489--1274539 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1274479 GTTAACTTAG
1274489 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
1274515 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAAAGTTCATCCCCAGTCTA
1274540 TGATCAAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:1274869 original size:26 final size:26
Alignment explanation
Indices: 1274833--1274885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1274823 GTTGACTTAG
*
1274833 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1274859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1274885 G
1 G
1274886 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1275458 original size:45 final size:46
Alignment explanation
Indices: 1275326--1275548 Score: 188
Period size: 45 Copynumber: 4.9 Consensus size: 46
1275316 CGGGGCTTGA
* * * * *
1275326 CATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACC-ACGGCCCAG
1 CATGTGCCGATGGTGGTTGAGGCAATCGCCCGCACCAAGGGCCGAG
* * * * * * *
1275371 CATGTGTCGATTGTGTTTGATGCAATCGCCCGTACCATGGGCC-AT
1 CATGTGCCGATGGTGGTTGAGGCAATCGCCCGCACCAAGGGCCGAG
* * *
1275416 CTTGTGCCAATGGTGGTTGAGGCAATCGCTCGCACCAAGGGCCGA-
1 CATGTGCCGATGGTGGTTGAGGCAATCGCCCGCACCAAGGGCCGAG
* ** *
1275461 CATGTGCCGATGGTGATCAAGGCAA-CTGCCCGCACC-AGGGCCTAG
1 CATGTGCCGATGGTGGTTGAGGCAATC-GCCCGCACCAAGGGCCGAG
* *
1275506 CTTGTGCCGATGGTGGTTGAGGCAAGT-GCCCGTACCAAAGGGC
1 CATGTGCCGATGGTGGTTGAGGCAA-TCGCCCGCACC-AAGGGC
1275549 AACTTGTGCC
Statistics
Matches: 138, Mismatches: 32, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
44 8 0.06
45 120 0.87
46 5 0.04
47 5 0.04
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (46 bp):
CATGTGCCGATGGTGGTTGAGGCAATCGCCCGCACCAAGGGCCGAG
Found at i:1275492 original size:90 final size:90
Alignment explanation
Indices: 1275328--1275530 Score: 241
Period size: 90 Copynumber: 2.3 Consensus size: 90
1275318 GGGCTTGACA
* * * * ** *
1275328 TGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCACGGCCCAGCATGTGTCGATTGTGTTTGATG
1 TGTGCCGATGGTGGTTGAGGCAACCGCTCGCACCACGGCCCAGCATGTGCCGATGGTGATCAAGG
* *
1275393 CAATCGCCCGTACCATGGGCC-ATCT
66 CAATCGCCCGCACCA-GGGCCTAGCT
* * * *
1275418 TGTGCCAATGGTGGTTGAGGCAATCGCTCGCACCAAGGGCC-GACATGTGCCGATGGTGATCAAG
1 TGTGCCGATGGTGGTTGAGGCAACCGCTCGCACCACGGCCCAG-CATGTGCCGATGGTGATCAAG
1275482 GCAA-CTGCCCGCACCAGGGCCTAGCT
65 GCAATC-GCCCGCACCAGGGCCTAGCT
1275508 TGTGCCGATGGTGGTTGAGGCAA
1 TGTGCCGATGGTGGTTGAGGCAA
1275531 GTGCCCGTAC
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
89 7 0.07
90 89 0.93
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (90 bp):
TGTGCCGATGGTGGTTGAGGCAACCGCTCGCACCACGGCCCAGCATGTGCCGATGGTGATCAAGG
CAATCGCCCGCACCAGGGCCTAGCT
Found at i:1275543 original size:90 final size:90
Alignment explanation
Indices: 1275398--1275561 Score: 217
Period size: 90 Copynumber: 1.8 Consensus size: 90
1275388 TGATGCAATC
* * * *
1275398 GCCCGTACCATGGGCCATCTTGTGCCAATGGTGGTTGAGGCAATCGCTCGCACC-AAGGGCCGAC
1 GCCCGCACCATGGGCCAGCTTGTGCCAATGGTGGTTGAGGCAATCGCCCGCACCAAAGGG-CAAC
1275462 ATGTGCCGATGGTGATCAAGGCAACT
65 ATGTGCCGATGGTGATCAAGGCAACT
* *
1275488 GCCCGCACCA-GGGCCTAGCTTGTGCCGATGGTGGTTGAGGCAAGT-GCCCGTACCAAAGGGCAA
1 GCCCGCACCATGGGCC-AGCTTGTGCCAATGGTGGTTGAGGCAA-TCGCCCGCACCAAAGGGCAA
*
1275551 CTTGTGCCGAT
64 CATGTGCCGAT
1275562 AATGGTCGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
89 5 0.08
90 53 0.83
91 6 0.09
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (90 bp):
GCCCGCACCATGGGCCAGCTTGTGCCAATGGTGGTTGAGGCAATCGCCCGCACCAAAGGGCAACA
TGTGCCGATGGTGATCAAGGCAACT
Found at i:1275587 original size:135 final size:135
Alignment explanation
Indices: 1275324--1275570 Score: 291
Period size: 135 Copynumber: 1.8 Consensus size: 135
1275314 ATCGGGGCTT
* * * * * *
1275324 GACATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCACGGCCCAGCATGTGTCGATTGTGTTT
1 GACATGTGCCGATGGTGATCAAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGGTT
* * * ** * **
1275389 GATGCAATCGCCCGTACCATGGGCCATCTTGTGCCAATGGTGGTTGAGGCAATCGCTCGCACCAA
66 GAGGCAATCGCCCGTACCAAGGGCCAACTTGTGCCAATAATGGTCGAGGCAATCGCAAGCACCAA
1275454 GGGCC
131 GGGCC
* * * *
1275459 GACATGTGCCGATGGTGATCAAGGCAACTGCCCGCACCAGGGCCTAGCTTGTGCCGATGGTGGTT
1 GACATGTGCCGATGGTGATCAAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGGTT
*
1275524 GAGGCAAGT-GCCCGTACCAAAGGG-CAACTTGTGCCGATAATGGTCGA
66 GAGGCAA-TCGCCCGTACC-AAGGGCCAACTTGTGCCAATAATGGTCGA
1275571 TGCATGTGCA
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
135 88 0.95
136 5 0.05
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (135 bp):
GACATGTGCCGATGGTGATCAAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGGTT
GAGGCAATCGCCCGTACCAAGGGCCAACTTGTGCCAATAATGGTCGAGGCAATCGCAAGCACCAA
GGGCC
Found at i:1276856 original size:26 final size:26
Alignment explanation
Indices: 1276820--1276872 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1276810 GTTGACTTTG
1276820 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1276846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1276872 G
1 G
1276873 ATCGGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1284760 original size:26 final size:26
Alignment explanation
Indices: 1284708--1284760 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1284698 GTTGACTTAG
*
1284708 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1284734 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1284760 G
1 G
1284761 ATTGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1285252 original size:45 final size:45
Alignment explanation
Indices: 1285201--1285318 Score: 164
Period size: 45 Copynumber: 2.6 Consensus size: 45
1285191 GACCGAGGCT
1285201 CAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCC
1 CAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCC
* * * * *
1285246 CAACATGTGCCGATGGTGTTCGATGCAATCGCCCGCACCAGGGGC
1 CAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCC
* * *
1285291 CATCTTGTGTCGATGGTGGTCGAGGCAA
1 CAACATGTGCCGATGGTGGTCGAGGCAA
1285319 GTGCCTGTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 63 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
CAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCC
Found at i:1286293 original size:26 final size:26
Alignment explanation
Indices: 1286263--1286312 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1286253 GACTTAAGGG
*
1286263 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTAATCCCCAGTCTAAGCA
*
1286289 TACGGAGTTAATTCCCAGTCTAAG
1 TACGGAGTTAATCCCCAGTCTAAG
1286313 ATCTGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTAATCCCCAGTCTAAGCA
Found at i:1286652 original size:26 final size:26
Alignment explanation
Indices: 1286615--1286667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1286605 GTTGACTTAG
* *
1286615 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTACCAATCTAA
*
1286641 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAATCTAA
1286667 G
1 G
1286668 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAATCTAA
Found at i:1287240 original size:45 final size:45
Alignment explanation
Indices: 1287110--1287341 Score: 144
Period size: 45 Copynumber: 5.2 Consensus size: 45
1287100 GGGCTCGGCA
* * * * * * *
1287110 TGTGTCGATGGTGGTCGAGACAACCGCCCATACCACA-GCCCAGCA
1 TGTGCCGATGGTGATCGAGGCAACTGCCCACACCA-AGGGCCAGCT
* * * * ** * * *
1287155 TGTGCCGATGGTGTTTGATGCAACGGCCCGTACTAGGGGCCATCT
1 TGTGCCGATGGTGATCGAGGCAACTGCCCACACCAAGGGCCAGCT
* * * * *
1287200 TGTACCGATGGTGGTCGAGGCAATTGCCCACACCAAGGGCCGGCA
1 TGTGCCGATGGTGATCGAGGCAACTGCCCACACCAAGGGCCAGCT
** * ** *
1287245 TGTGCCGATGGTGATAAAGGCAACCGCCTGCACCAAGGCCCAGCT
1 TGTGCCGATGGTGATCGAGGCAACTGCCCACACCAAGGGCCAGCT
* * ** *
1287290 TGTGCCGATGGCGATCGAGGCAAGTGCCCGTACCAAAGGG-CAACT
1 TGTGCCGATGGTGATCGAGGCAACTGCCCACACC-AAGGGCCAGCT
1287335 TGTGCCG
1 TGTGCCG
1287342 CTGATGGTCG
Statistics
Matches: 140, Mismatches: 45, Indels: 4
0.74 0.24 0.02
Matches are distributed among these distances:
45 136 0.97
46 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGATCGAGGCAACTGCCCACACCAAGGGCCAGCT
Found at i:1287268 original size:90 final size:90
Alignment explanation
Indices: 1287115--1287318 Score: 203
Period size: 90 Copynumber: 2.3 Consensus size: 90
1287105 CGGCATGTGT
* * * * ** * *
1287115 CGATGGTGGTCGAGACAACCGCCCATACCACAGCCCAGCATGTGCCGATGGTGTTTGATGCAACG
1 CGATGGTGGTCGAGGCAACTGCCCACACCACAGCCCAGCATGTGCCGATGGTGATAAAGGCAACC
* * * * *
1287180 GCCCGTACTAGGGGCCATCTTGTAC
66 GCCCGCACCAAGGCCCAGCTTGTAC
* * *
1287205 CGATGGTGGTCGAGGCAATTGCCCACACCA-AGGGCCGGCATGTGCCGATGGTGATAAAGGCAAC
1 CGATGGTGGTCGAGGCAACTGCCCACACCACA-GCCCAGCATGTGCCGATGGTGATAAAGGCAAC
* *
1287269 CGCCTGCACCAAGGCCCAGCTTGTGC
65 CGCCCGCACCAAGGCCCAGCTTGTAC
* * *
1287295 CGATGGCGATCGAGGCAAGTGCCC
1 CGATGGTGGTCGAGGCAACTGCCC
1287319 GTACCAAAGG
Statistics
Matches: 92, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 1 0.01
90 91 0.99
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.17
Consensus pattern (90 bp):
CGATGGTGGTCGAGGCAACTGCCCACACCACAGCCCAGCATGTGCCGATGGTGATAAAGGCAACC
GCCCGCACCAAGGCCCAGCTTGTAC
Found at i:1288318 original size:26 final size:26
Alignment explanation
Indices: 1288251--1288329 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
1288241 GTTGACTTAG
* *
1288251 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
*
1288277 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
1288303 GCATACGAAGTTCATTCGC-AGTCTAA
1 GCATACGAAGTTCATTC-CTAGTCTAA
1288329 G
1 G
1288330 ATTAGATTAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 47 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:1288666 original size:25 final size:26
Alignment explanation
Indices: 1288630--1288681 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1288620 GTTAACTTAG
1288630 GCATACAAAGTTCATTC-CAGTCTAA
1 GCATACAAAGTTCATTCTCAGTCTAA
* *
1288655 GCATACAGAGTTCATTCTCAGTGTAA
1 GCATACAAAGTTCATTCTCAGTCTAA
1288681 G
1 G
1288682 ATCGGACAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAAAGTTCATTCTCAGTCTAA
Found at i:1289188 original size:45 final size:45
Alignment explanation
Indices: 1289120--1289291 Score: 211
Period size: 45 Copynumber: 3.8 Consensus size: 45
1289110 TCGGGGGCCG
* *
1289120 ACCAGGG-CTCGCTATGTGTCGATGGTGGTCGAGGCAACAGCCCGC
1 ACCAGGGCCTAGC-ATGTGCCGATGGTGGTCGAGGCAACAGCCCGC
* * * * *
1289165 ACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAACTGCCCGC
1 ACCAGGGCCTAGCATGTGCCGATGGTGGTCGAGGCAACAGCCCGC
* * *
1289210 ACCAGGGCCTAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGC
1 ACCAGGGCCTAGCATGTGCCGATGGTGGTCGAGGCAACAGCCCGC
* * *
1289255 ACCAGGGCCTAGCTTGTGCCGATGGCGATCGAGGCAA
1 ACCAGGGCCTAGCATGTGCCGATGGTGGTCGAGGCAA
1289292 GTGCAGGTAC
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 107 0.97
46 3 0.03
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (45 bp):
ACCAGGGCCTAGCATGTGCCGATGGTGGTCGAGGCAACAGCCCGC
Found at i:1289323 original size:90 final size:90
Alignment explanation
Indices: 1289134--1289331 Score: 220
Period size: 90 Copynumber: 2.2 Consensus size: 90
1289124 GGGCTCGCTA
* * *
1289134 TGTGTCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATG
1 TGTGTCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAGCATGTGCCGATGGCGATCGAGG
* * *
1289199 CAACTGCCCGCACCAGGGCCTAGCT
66 CAACTGCACGCACCAAGGCCTAGCC
* * * * * *
1289224 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAGGGCCTAGCTTGTGCCGATGGCGATCGAGG
1 TGTGTCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAGCATGTGCCGATGGCGATCGAGG
* * *
1289289 CAAGTGCAGGTACCAAAAGG-C-AGCC
66 CAACTGCACGCACC--AAGGCCTAGCC
*
1289314 TGTGTCGATGATGGTCGA
1 TGTGTCGATGGTGGTCGA
1289332 TGCATGTGCC
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
90 85 0.96
91 1 0.01
92 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.18
Consensus pattern (90 bp):
TGTGTCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAGCATGTGCCGATGGCGATCGAGG
CAACTGCACGCACCAAGGCCTAGCC
Found at i:1290705 original size:26 final size:26
Alignment explanation
Indices: 1290676--1290728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1290666 GTTGACTTAG
*
1290676 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1290702 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1290728 G
1 G
1290729 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1291648 original size:45 final size:44
Alignment explanation
Indices: 1291508--1291661 Score: 116
Period size: 45 Copynumber: 3.4 Consensus size: 44
1291498 CCGAGGCTCG
* **
1291508 GCTTGTGCCAATGGTGGTCGAAGTAAGTGCCTGCACCA-CGGCCCA
1 GCTTGTGCCAATGGTGGTC-AAGAAACCGCCTGCACCAGC-GCCCA
* * * * * * *
1291553 GCTTGTGCCGATGGTGTTCGATGCAACCTACC-ACACCAGAC-ACCA
1 GCTTGTGCCAATGGTGGTC-AAGAAACC-GCCTGCACCAG-CGCCCA
* *
1291598 TCTTGTGCCGATGGTGGTCAAGGAAACCGCCTGCACCAGCGCCCA
1 GCTTGTGCCAATGGTGGTCAA-GAAACCGCCTGCACCAGCGCCCA
*
1291643 GCTTGTGCCAATGGCGGTC
1 GCTTGTGCCAATGGTGGTC
1291662 GAGGCAAGTG
Statistics
Matches: 84, Mismatches: 19, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
44 4 0.05
45 77 0.92
46 2 0.02
47 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (44 bp):
GCTTGTGCCAATGGTGGTCAAGAAACCGCCTGCACCAGCGCCCA
Found at i:1291729 original size:13 final size:13
Alignment explanation
Indices: 1291711--1291735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1291701 ATAGTCGATG
1291711 CATGTGCCATCAC
1 CATGTGCCATCAC
1291724 CATGTGCCATCA
1 CATGTGCCATCA
1291736 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1292635 original size:26 final size:26
Alignment explanation
Indices: 1292606--1292657 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1292596 TTGACTTAGC
*
1292606 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
* *
1292632 CATACTGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATCCCCAATCTAAG
1292658 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAG
Found at i:1292829 original size:26 final size:26
Alignment explanation
Indices: 1292799--1292854 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
1292789 TGGGTTGACT
* *
1292799 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGAAGTGCATCCCCAGTC
*
1292825 TAAGCATACGAAGTGCATTCCCAGTC
1 TAAGCATACGAAGTGCATCCCCAGTC
1292851 TAAG
1 TAAG
1292855 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (26 bp):
TAAGCATACGAAGTGCATCCCCAGTC
Found at i:1292895 original size:197 final size:195
Alignment explanation
Indices: 1292451--1292895 Score: 549
Period size: 197 Copynumber: 2.3 Consensus size: 195
1292441 CATAGTGCGC
* * * * * **
1292451 TCCCAGTCTATGATCGGACCGAACCGAGGGTTGTAG-AGCAGGACCCGTAGTGGGATCGACAGCA
1 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGA-CAGCAGCAGGATCGACAGCA
* * ** * *
1292515 CGCAGAGGGGATCAGGTCGATCCCCGGTTGACGAATCTTGCCTCTCTGGCCGGTTGAGCGCCCGT
65 CGCAGAGGGGATCAGGCCAATCCCCACTTGACGAATCTTGCCTCTCTGGCCGGCTGAGCGCCCGC
* *
1292580 ACGCTCATTTCGTGAGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTAAGCATACTGAGTTCA
130 ACGCTCATTTCATGAGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTAAGCATACTGAGTGCA
1292645 T
195 T
* * * * *
1292646 TCCCAATCTAAGATCGGATCGGATCAAGGGTTGCAGCAACAGGACTAGCAGCAGGATCGACAGCA
1 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGAC-AGCAGCAGGATCGACAGCA
* * *
1292711 CGCAGGGAGGGATC-GAGCCAATCCCCAACTTG-TGCATCTTGCCTCTCTGGCCGGCTGAGCGCC
65 CGCAGAG-GGGATCAG-GCCAATCCCC-ACTTGACGAATCTTGCCTCTCTGGCCGGCTGAGCGCC
* *
1292774 CGCACGCTCGTTTCATGGGTTGACTTAAG-CATACGGAGTTCATCCCCAGTCTAAGCATAC-GAA
127 CGCACGCTCATTTCATGAGTTGACTT-AGCCATACGGAGTTCATCCCCAGTCTAAGCATACTG-A
1292837 GTGCAT
190 GTGCAT
*
1292843 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCAGCAGCA
1 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGA-CAGCAGCA
1292896 CGTAGGGGCG
Statistics
Matches: 211, Mismatches: 31, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
195 30 0.14
196 29 0.14
197 146 0.69
198 6 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (195 bp):
TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGCAGGACAGCAGCAGGATCGACAGCAC
GCAGAGGGGATCAGGCCAATCCCCACTTGACGAATCTTGCCTCTCTGGCCGGCTGAGCGCCCGCA
CGCTCATTTCATGAGTTGACTTAGCCATACGGAGTTCATCCCCAGTCTAAGCATACTGAGTGCAT
Found at i:1293736 original size:44 final size:45
Alignment explanation
Indices: 1293629--1293755 Score: 125
Period size: 45 Copynumber: 2.8 Consensus size: 45
1293619 CGACATGCTT
*
1293629 TGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGC
1 TGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGC
* * * * * * *
1293674 CGATGGTGTTCGAAGCAACCGCCCACCCCA-GAGGCCATCTTGT-C
1 TGATGGTGGTCGAGGCAACCGCCCACACCACG-GCCCAGCATGTGC
* *
1293718 TGATGGTGGTCGAGGCAACCACCCTCACCA-GTGCCCAG
1 TGATGGTGGTCGAGGCAACCGCCCACACCACG-GCCCAG
1293756 TTTGTGCCCA
Statistics
Matches: 64, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
44 31 0.48
45 33 0.52
ACGTcount: A:0.20, C:0.35, G:0.29, T:0.16
Consensus pattern (45 bp):
TGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGC
Found at i:1296054 original size:26 final size:26
Alignment explanation
Indices: 1296014--1296069 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
1296004 TGGGTTGACT
1296014 TAAGCATACGAAGTTCATTC-CTAGTC
1 TAAGCATACGAAGTTCATTCTC-AGTC
*
1296040 TAAGCATACGGAGTTCATTCTCAGTC
1 TAAGCATACGAAGTTCATTCTCAGTC
1296066 TAAG
1 TAAG
1296070 ATCGAATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCTCAGTC
Found at i:1296560 original size:45 final size:45
Alignment explanation
Indices: 1296490--1296649 Score: 239
Period size: 45 Copynumber: 3.6 Consensus size: 45
1296480 CGGGGCTCGA
* * *
1296490 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAG
* * * *
1296535 CATGTGCCGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAG
*
1296580 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAG
*
1296625 CTTGTGCCGATGGTGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1296650 GTGCCCGTAC
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 103 1.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAG
Found at i:1296687 original size:90 final size:90
Alignment explanation
Indices: 1296494--1296689 Score: 232
Period size: 90 Copynumber: 2.2 Consensus size: 90
1296484 GCTCGACATG
* * * * *
1296494 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCA
* * * *
1296559 ACCGCCCACACCAGGGGCCATCTTG
66 ACCGCCCACACCAAGGGCCAACCTA
*
1296584 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCA
** **
1296649 AGTGCCCGTACCAAAGGG-CAACCTA
66 ACCGCCCACACC-AAGGGCCAACCTA
* *
1296674 TGCTGATGATGGTCGA
1 TGCCGATGGTGGTCGA
1296690 TGTATGTGCC
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 85 0.96
91 4 0.04
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (90 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCA
ACCGCCCACACCAAGGGCCAACCTA
Found at i:1297793 original size:26 final size:26
Alignment explanation
Indices: 1297764--1297816 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1297754 GTTGATTTAG
* *
1297764 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1297790 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1297816 G
1 G
1297817 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1298534 original size:26 final size:26
Alignment explanation
Indices: 1298504--1298557 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
1298494 GTTGACTTAG
* *
1298504 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1298530 GCATACAGAGTTCATTCCCGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1298556 GC
1 GC
1298558 CCCAACCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1298911 original size:45 final size:45
Alignment explanation
Indices: 1298861--1298976 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
1298851 CGGGGCTCGA
*
1298861 CATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCACG-GCCCAG
1 CATGTGTCGATGGTGGTCGAGGCAACCACCCACACCA-GAGCCCAG
* * * * * * *
1298906 CATGTGCCAATGGTGTTCGATGCAACCGCCCACACCAGAGGCCAT
1 CATGTGTCGATGGTGGTCGAGGCAACCACCCACACCAGAGCCCAG
* *
1298951 CTTGTGTCGATGTTGGTCGAGGCAAC
1 CATGTGTCGATGGTGGTCGAGGCAAC
1298977 TGCCCGTACT
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
44 1 0.02
45 55 0.98
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (45 bp):
CATGTGTCGATGGTGGTCGAGGCAACCACCCACACCAGAGCCCAG
Found at i:1299027 original size:90 final size:90
Alignment explanation
Indices: 1298863--1299060 Score: 207
Period size: 90 Copynumber: 2.2 Consensus size: 90
1298853 GGGCTCGACA
* * * * * *
1298863 TGTGTCGATGGTGGTCGAGGCAACCACCCGCACCACGGCCCAGCATGTGCCAATGGTGTTCGATG
1 TGTGTCGATGATGGTCGAGGCAACCACCCGCACCACGGCCCAACATGTGCCAATGGCGGTCAAGG
* * *
1298928 CAACCGCCCACACCAGAGGCCATCT
66 CAACCGCCCACACCAAAGGCCAGCC
* ** * * * *
1298953 TGTGTCGATGTTGGTCGAGGCAACTGCCCGTACTAGGGCCCAACTTGTGCCAATGGCGGTCAAGG
1 TGTGTCGATGATGGTCGAGGCAACCACCCGCACCACGGCCCAACATGTGCCAATGGCGGTCAAGG
** * *
1299018 CAAGTGCCCATACCAAAGGGCAGCC
66 CAACCGCCCACACCAAAGGCCAGCC
*
1299043 TGTGCCGATGATGGTCGA
1 TGTGTCGATGATGGTCGA
1299061 TGCATGTGCC
Statistics
Matches: 87, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (90 bp):
TGTGTCGATGATGGTCGAGGCAACCACCCGCACCACGGCCCAACATGTGCCAATGGCGGTCAAGG
CAACCGCCCACACCAAAGGCCAGCC
Found at i:1299988 original size:26 final size:26
Alignment explanation
Indices: 1299951--1300003 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1299941 GTTGACTTAG
1299951 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1299977 GCATAC-ACAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
1300003 G
1 G
1300004 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1300913 original size:90 final size:90
Alignment explanation
Indices: 1300800--1301002 Score: 203
Period size: 90 Copynumber: 2.3 Consensus size: 90
1300790 GGGCTCAACA
* * * ** * * * *
1300800 TGTGGCGATGGTGGTCAAAGCAATTGCCCCCACCATGGCCC-AGCATGTGCCGATGGTGTTCGAT
1 TGTGCCGATGGTGGTCGAGGCAATCACCCCCACCAAGGCCCGA-CATGGGCCGATGGTGATCGAG
* * *
1300864 GCAATCGCCCGCACCAGGGGCC-ATCT
65 GCAACCACCCGCACCA-GGGCCTAGCT
* * **
1300890 TGTGCCGATGGTGGTCGAGGCAATCACTCGCACCAAGGGTCGACATGGGCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCCCACCAAGGCCCGACATGGGCCGATGGTGATCGAGG
*
1300955 TAACCACCCGCACCAGGGCCTAGCT
66 CAACCACCCGCACCAGGGCCTAGCT
* *
1300980 TGTGTCGATGGTGATCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1301003 GTACCCGTAC
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
89 5 0.05
90 86 0.93
91 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAATCACCCCCACCAAGGCCCGACATGGGCCGATGGTGATCGAGG
CAACCACCCGCACCAGGGCCTAGCT
Found at i:1301009 original size:45 final size:44
Alignment explanation
Indices: 1300786--1301002 Score: 175
Period size: 45 Copynumber: 4.8 Consensus size: 44
1300776 TGGGGGGCTG
* * * * * ** *
1300786 ACCAGGGCTCAACATGTGGCGATGGTGGTCAAAGCAATTGCCCCC
1 ACCAGGGC-CAGCATGTGCCGATGGTGATCGAGGCAATCACCCGC
* * * *
1300831 ACCATGGCCCAGCATGTGCCGATGGTGTTCGATGCAATCGCCCGC
1 ACCA-GGGCCAGCATGTGCCGATGGTGATCGAGGCAATCACCCGC
* * * *
1300876 ACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATCACTCGC
1 ACCA-GGGCCAGCATGTGCCGATGGTGATCGAGGCAATCACCCGC
* * * *
1300921 ACCAAGGGTC-GACATGGGCCGATGGTGATCGAGGTAACCACCCGC
1 ACC-AGGGCCAG-CATGTGCCGATGGTGATCGAGGCAATCACCCGC
* *
1300966 ACCAGGGCCTAGCTTGTGTCGATGGTGATCGAGGCAA
1 ACCAGGGCC-AGCATGTGCCGATGGTGATCGAGGCAA
1301003 GTACCCGTAC
Statistics
Matches: 138, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
44 5 0.04
45 128 0.93
46 5 0.04
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.18
Consensus pattern (44 bp):
ACCAGGGCCAGCATGTGCCGATGGTGATCGAGGCAATCACCCGC
Found at i:1301015 original size:90 final size:91
Alignment explanation
Indices: 1300843--1301020 Score: 218
Period size: 90 Copynumber: 2.0 Consensus size: 91
1300833 CATGGCCCAG
* * * * * * *
1300843 CATGTGCCGATGGTGTTCGATGCAATCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGA
1 CATGGGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCCAGCTTGTGCCGATGGTGATCGA
*
1300908 GGCAATCACTCGCACC-AAGGGTCGA
66 GGCAATCACCCGCACCAAAGGGTCGA
* *
1300933 CATGGGCCGATGGTGATCGAGGTAACCACCCGCACCA-GGGCCTAGCTTGTGTCGATGGTGATCG
1 CATGGGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCC-AGCTTGTGCCGATGGTGATCG
*
1300997 AGGCAAGT-ACCCGTACCAAAGGGT
65 AGGCAA-TCACCCGCACCAAAGGGT
1301021 AGCTTGTGTT
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
89 5 0.07
90 62 0.84
91 7 0.09
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.19
Consensus pattern (91 bp):
CATGGGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCCAGCTTGTGCCGATGGTGATCGA
GGCAATCACCCGCACCAAAGGGTCGA
Found at i:1301029 original size:45 final size:43
Alignment explanation
Indices: 1300845--1301028 Score: 145
Period size: 45 Copynumber: 4.1 Consensus size: 43
1300835 TGGCCCAGCA
* * * * * *
1300845 TGTGCCGATGGTGTTCGATGCAATCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGATCGAGGCAAT-ACCCGCACCAAGGG-TAGCT
* * * *
1300890 TGTGCCGATGGTGGTCGAGGCAATCACTCGCACCAAGGGTCGACA
1 TGTGCCGATGGTGATCGAGGCAAT-ACCCGCACCAAGGGTAG-CT
* * *
1300935 TGGGCCGATGGTGATCGAGGTAACCACCCGCACC-AGGGCCTAGCT
1 TGTGCCGATGGTGATCGAGGCAA-TACCCGCACCAAGGG--TAGCT
* *
1300980 TGTGTCGATGGTGATCGAGGCAAGTACCCGTACCAAAGGGTAGCT
1 TGTGCCGATGGTGATCGAGGCAA-TACCCGCACC-AAGGGTAGCT
1301025 TGTG
1 TGTG
1301029 TTGATGATGG
Statistics
Matches: 111, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
44 4 0.04
45 101 0.91
46 2 0.02
47 4 0.04
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.20
Consensus pattern (43 bp):
TGTGCCGATGGTGATCGAGGCAATACCCGCACCAAGGGTAGCT
Found at i:1301848 original size:26 final size:26
Alignment explanation
Indices: 1301819--1301871 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1301809 GTTAACTTAG
1301819 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCACTCCC-AGTCTAA
*
1301845 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1301871 G
1 G
1301872 ATTCAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1302210 original size:26 final size:25
Alignment explanation
Indices: 1302174--1302225 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
1302164 GTTGACTTAG
1302174 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
1302200 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
1302225 G
1 G
1302226 ATCAGACGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:1302374 original size:26 final size:26
Alignment explanation
Indices: 1302335--1302387 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1302325 GTTGACTTAG
*
1302335 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
1302361 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
1302387 G
1 G
1302388 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:1302579 original size:515 final size:517
Alignment explanation
Indices: 1301794--1302748 Score: 1371
Period size: 515 Copynumber: 1.9 Consensus size: 517
1301784 GAGCGTCCAC
* * **
1301794 ACGCTCGTCTCATGGGTTAACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATATGGAGTTCA
1 ACGCTCGTCTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
* * * * *
1301859 CTCCCAGTCTAAGATTCAACCGGATCGAGGTTTGTGACAGTAGGACCAGTAGTAGGATCGACAGC
66 CTCCCAGTCTAAGATTCAACCGGATCAAGGATTGTGACAGCAGGACCAGCAGTAGGAACGACAGC
* * * * * ** *
1301924 ATGCAGGGGGGATCGAGCCGATCCTCGGCTTGCGTATTTTGCCTCTCCGACCGACTGAGCCCCCG
131 ACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACTGAGCCCCAG
* * * *
1301989 CACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGAC
196 CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGCCAGAC
* * * * * *
1302054 TGAGGGTTGTGGCAGCGGGACTGGTAGCACGCAGAAGAGGACCGGGCCGATCCCTGACTTATGCA
261 CGAGGGTTGTGGCAGCGGGACTAGCAGCACGAAGAAGAGGACCGGGCCGATCCCCGACTTACGCA
* *
1302119 TTATGCCTCTCCAG-CCGGCTCAGTGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACGGA
326 TTATGCCTCTCC-GTCCGACTCAGTGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACAGA
*
1302183 GTTCATTCCTAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCAGACGAGCCGTAGCATGC
390 GTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGCCGTAGCATGC
1302247 AGAGGGGGACCGGGCCGATCCTCGGCTTACGCATCATACCTCTCCGACTGACTGAGCGCTCGG
455 AGAGGGGGACCGGGCCGATCCTCGGCTTACGCATCATACCTCTCCGACTGACTGAGCGCTCGG
* * * *
1302310 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGATTTCA
1 ACGCTCGTCTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
* * * *
1302375 TTCCCAGTCTAAGA-TCGGACTGGAT-AAGGATTGTGACAGCAGGACCAGCAGTAGGAACGATAG
66 CTCCCAGTCTAAGATTC-AACCGGATCAAGGATTGTGACAGCAGGACCAGCAGTAGGAACGACAG
* ** *
1302438 CACGCAGGGGGGACCGGGTTGATCCCCGGCTTACGCATCCTGCCTCTCCGACTGACTGAGCCCCA
130 CACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACTGAGCCCCA
* * *
1302503 GCACGTTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATCTCTCAA-CCCCAGCCAG
195 GCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCT-AAGCCCCAGCCAG
* * * *
1302567 ACCGAGGGTTGTGGCAGCGGGACTAGCAGCACGAAGAAGGGGATCGGGTCGATCCCCGGCTTACG
259 ACCGAGGGTTGTGGCAGCGGGACTAGCAGCACGAAGAAGAGGACCGGGCCGATCCCCGACTTACG
* * * *
1302632 CATTATGCCTCTCCGTCTGACTCAGTGCCCGTACGCTCTTTTTGTGGGTTGACTTAGGCATACAG
324 CATTATGCCTCTCCGTCCGACTCAGTGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACAG
1302697 AGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
389 AGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1302749 TAGACTAAGG
Statistics
Matches: 382, Mismatches: 53, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
514 1 0.00
515 286 0.75
516 95 0.25
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (517 bp):
ACGCTCGTCTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
CTCCCAGTCTAAGATTCAACCGGATCAAGGATTGTGACAGCAGGACCAGCAGTAGGAACGACAGC
ACGCAGGGGGGACCGAGCCGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACTGAGCCCCAG
CACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCTCTAAGCCCCAGCCAGAC
CGAGGGTTGTGGCAGCGGGACTAGCAGCACGAAGAAGAGGACCGGGCCGATCCCCGACTTACGCA
TTATGCCTCTCCGTCCGACTCAGTGCCCGCACACTCGTTTTGTGGGTTGACTTAGGCATACAGAG
TTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGCCGTAGCATGCA
GAGGGGGACCGGGCCGATCCTCGGCTTACGCATCATACCTCTCCGACTGACTGAGCGCTCGG
Found at i:1302725 original size:26 final size:26
Alignment explanation
Indices: 1302689--1302741 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1302679 GTTGACTTAG
1302689 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
1302715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1302741 G
1 G
1302742 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1302743 original size:354 final size:355
Alignment explanation
Indices: 1302251--1303102 Score: 1231
Period size: 354 Copynumber: 2.4 Consensus size: 355
1302241 GCATGCAGAG
* * * * * * * * *
1302251 GGGGACCGGGCCGATCCTCGGCTTACGCATCATACCTCTCCGACTGACTGAGCGCTCGGACGCTC
1 GGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGTCTGACTCAGTGCTCGCACGCTC
* * * *
1302316 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGATTTCATTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCA
* * ** *
1302381 GTCTAAGATCGGACTGGA-TAAGGATTGTGACAGCAGGACCAGCAGTAGGAACGATAGCACGCAG
131 GTCTAAGATCAGACTAGACTAAGGATTACGACAGCAGGACCAGCAGTAGGAACGACAGCACGCAG
* *** * *
1302445 GGGGGACCGGGTTGATCCCCGGCTTACGCATCCTGCCTCTCCGACTGACTGAGCCCCAGCACGTT
196 GGGGAACCAAATTGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACTGAGCCCCAGCACGCT
* *
1302510 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTTATTCCATCTCTCAACCCCAGCCAGACCGAGGG
261 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCCCTCAACCCCAGCCAGACCGAGGG
* *
1302575 TTGTGGCAGCGGGACTAGCAGCACGAAGAA
326 TTGTGGCAGCGAGACTAGCAGCACAAAGAA
* *
1302605 GGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGTCTGACTCAGTGCCCGTACGCTC
1 GGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGTCTGACTCAGTGCTCGCACGCTC
* * *
1302670 TTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCA
* * *
1302735 GTCTAAGATCAGACTAGACTAAGGGTTACGGCAGTAGGACCAGCAGTAGGAACGACAGCACGCAG
131 GTCTAAGATCAGACTAGACTAAGGATTACGACAGCAGGACCAGCAGTAGGAACGACAGCACGCAG
* *
1302800 GGGGAACCAAATTGATCCCCGGCTTACGCATCTTGCCTCTCTGACCGACTGAGCCCCAGCACGCT
196 GGGGAACCAAATTGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACTGAGCCCCAGCACGCT
* * * *
1302865 CGTTTCGTGGGTTGGCTTAGGCTTACGGAGTTCATTCCATCCCTCAGCCCCAGCCGGACCGAGGG
261 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCCCTCAACCCCAGCCAGACCGAGGG
* *
1302930 TTGTGGCAGTGAGACTAGTAGCACAAAGAA
326 TTGTGGCAGCGAGACTAGCAGCACAAAGAA
* * * * *
1302960 GGGGATC-GGTTGATCCCCGCCTTACGCATTATGCCTCTCCGTCTGACTTAATGCTGGCACGCTC
1 GGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGTCTGACTCAGTGCTCGCACGCTC
*
1303024 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCA
66 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCA
*
1303089 ATCTAAGATCAGAC
131 GTCTAAGATCAGAC
1303103 CAGCCGCAAC
Statistics
Matches: 442, Mismatches: 55, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
354 253 0.57
355 189 0.43
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (355 bp):
GGGGATCGGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGTCTGACTCAGTGCTCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTAGACTAAGGATTACGACAGCAGGACCAGCAGTAGGAACGACAGCACGCAG
GGGGAACCAAATTGATCCCCGGCTTACGCATCCTGCCTCTCCGACCGACTGAGCCCCAGCACGCT
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATCCCTCAACCCCAGCCAGACCGAGGG
TTGTGGCAGCGAGACTAGCAGCACAAAGAA
Found at i:1303079 original size:26 final size:26
Alignment explanation
Indices: 1303043--1303095 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1303033 GTTGACTTAG
* *
1303043 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1303069 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1303095 G
1 G
1303096 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1303524 original size:45 final size:45
Alignment explanation
Indices: 1303380--1303577 Score: 130
Period size: 45 Copynumber: 4.4 Consensus size: 45
1303370 GGGCTCGGCA
* * * * *
1303380 TGTGTCGATGGTGGTTGAGGCAACCTCCCACACCATA-GCCGAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCA-AGGCCCAGCT
* * * * *
1303425 TGTGCCGATGGTGTTCGATGCAACCACCCACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAGCT
** * * **
1303470 TGTATCGATGGTGGTCAAGGCAACCGCCCGTACCAAGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAGCT
** * *** * * *
1303515 TGTGCCGATGCCGATCGAGGCAAGTGCCCATACCAAAGG-GCAGCC
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACC-AAGGCCCAGCT
*
1303560 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
1303578 TGCATGTGCC
Statistics
Matches: 116, Mismatches: 35, Indels: 4
0.75 0.23 0.03
Matches are distributed among these distances:
45 112 0.97
46 4 0.03
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAGCT
Found at i:1305121 original size:45 final size:45
Alignment explanation
Indices: 1305064--1305224 Score: 164
Period size: 45 Copynumber: 3.6 Consensus size: 45
1305054 CCGCACTAGG
* * *
1305064 GGCCATCTTGTGCCGATGGTGGTCGAGGCAATCACCCTTACCAAA
1 GGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCATACCAAA
* * * * * *
1305109 GGCCGGCATGTGCCGATGGTGATCGAGGCAACCGCCCACACC-AG
1 GGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCATACCAAA
* * *
1305153 GGCCCAGCTTGTACCGATGGCGGTCGAGGCAAGT-GCCCGTACCAAA
1 GG-CCAGCTTGTGCCGATGGTGGTCGAGGCAA-TCGCCCATACCAAA
* *
1305199 GGGCAGCTTGTGCCGATGATGGTCGA
1 GGCCAGCTTGTGCCGATGGTGGTCGA
1305225 TGCATGTGCC
Statistics
Matches: 91, Mismatches: 22, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
44 3 0.03
45 85 0.93
46 3 0.03
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.17
Consensus pattern (45 bp):
GGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCATACCAAA
Found at i:1305140 original size:90 final size:90
Alignment explanation
Indices: 1305025--1305216 Score: 233
Period size: 90 Copynumber: 2.1 Consensus size: 90
1305015 CACGACCCAA
* * * * * * * * * *
1305025 CATGTGCCAATGGTGTTTGATGCAACCGCCCGCACTAGGGGCCATCTTGTGCCGATGGTGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTACCGATGGCGGTCGA
* *
1305090 GGCAA-TCACCCTTACCAAAGGCCGG
66 GGCAAGT-ACCCGTACCAAAGGCCAG
1305115 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTACCGATGGCGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTACCGATGGCGGTCGA
* *
1305180 GGCAAGTGCCCGTACCAAAGGGCAG
66 GGCAAGTACCCGTACCAAAGGCCAG
*
1305205 CTTGTGCCGATG
1 CATGTGCCGATG
1305217 ATGGTCGATG
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 85 0.99
91 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (90 bp):
CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTACCGATGGCGGTCGA
GGCAAGTACCCGTACCAAAGGCCAG
Found at i:1305241 original size:90 final size:90
Alignment explanation
Indices: 1304988--1305224 Score: 226
Period size: 90 Copynumber: 2.6 Consensus size: 90
1304978 GACATGTGCT
* * * * * * * * * * *
1304988 GATGGTGGTGGAGGCAATCACCCGCACC-ACGACCCAACATGTGCCAATGGTGTTTGATGCAACC
1 GATGGCGGTCGAGGCAATCACCCGTACCAAAG-GCCAGCATGTGCCGATGATGATCGAGGCAACC
* * * * *
1305052 GCCCGCACTAGGGGCCATCTTGTGCC
65 GCCCACACCAGGGCCCAGCTTGTACC
* * * *
1305078 GATGGTGGTCGAGGCAATCACCCTTACCAAAGGCCGGCATGTGCCGATGGTGATCGAGGCAACCG
1 GATGGCGGTCGAGGCAATCACCCGTACCAAAGGCCAGCATGTGCCGATGATGATCGAGGCAACCG
1305143 CCCACACCAGGGCCCAGCTTGTACC
66 CCCACACCAGGGCCCAGCTTGTACC
* * * *
1305168 GATGGCGGTCGAGGCAAGT-GCCCGTACCAAAGGGCAGCTTGTGCCGATGATGGTCGA
1 GATGGCGGTCGAGGCAA-TCACCCGTACCAAAGGCCAGCATGTGCCGATGATGATCGA
1305225 TGCATGTGCC
Statistics
Matches: 121, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
90 118 0.98
91 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.32, T:0.17
Consensus pattern (90 bp):
GATGGCGGTCGAGGCAATCACCCGTACCAAAGGCCAGCATGTGCCGATGATGATCGAGGCAACCG
CCCACACCAGGGCCCAGCTTGTACC
Found at i:1306325 original size:196 final size:196
Alignment explanation
Indices: 1305961--1306326 Score: 457
Period size: 196 Copynumber: 1.9 Consensus size: 196
1305951 CGTAGTGCCC
* * * *
1305961 TCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGTAGCAGGACACGTAGCAAGATCAACAGCA
1 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCAAGACACGTAGCAAGATCAACAGCA
* * * * *
1306026 CGCAGAGGGGATCGGAATGATCCCCGGCTTGCACATTTTACCTCTCTGGTCGGTTGAGCACCCGT
66 CGCAGAGGGGACCGGAACGATCCCCGGCTTGCACATTCTACCTCTCTGGCCGGTTGAGCACCCGC
* * * *
1306091 ATGCTCGTTTCGTGGGTTAACTTAGGCATTCGGAGTTCATCCCCAGTCTATGCATAAGGAGTTCT
131 ATGCTCGTTTCGTGGGTTAACTCAAGCATACAGAGTTCATCCCCAGTCTATGCATAAGGAGTTCT
1306156 T
196 T
* * *
1306157 TCCCAGTCTATGATCGGACCGGACCAAGGGTTGCAGCAGCAAGACTA-GTAGCAAGATCGACAGT
1 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCAAGAC-ACGTAGCAAGATCAACAGC
* ** ** * **
1306221 ACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTCTGCCTCT-TCGGCCGGTTGAGTTCCC
65 ACGCAGAGGGGACCGGAACGATCCCCGGCTTGCACATTCTACCTCTCT-GGCCGGTTGAGCACCC
* **
1306285 GCATGCTTGTTTCGTGGGTTGGCTCAAGCATACAGAGTTCAT
129 GCATGCTCGTTTCGTGGGTTAACTCAAGCATACAGAGTTCAT
1306327 TCCATGTCTA
Statistics
Matches: 141, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
195 1 0.01
196 139 0.99
197 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCAAGACACGTAGCAAGATCAACAGCA
CGCAGAGGGGACCGGAACGATCCCCGGCTTGCACATTCTACCTCTCTGGCCGGTTGAGCACCCGC
ATGCTCGTTTCGTGGGTTAACTCAAGCATACAGAGTTCATCCCCAGTCTATGCATAAGGAGTTCT
T
Done.