Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 12 of 120
Found at i:1306501 original size:26 final size:26
Alignment explanation
Indices: 1306472--1306524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1306462 GTTGACTTAG
1306472 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1306498 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1306524 G
1 G
1306525 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1306866 original size:355 final size:355
Alignment explanation
Indices: 1306066--1306872 Score: 1007
Period size: 356 Copynumber: 2.3 Consensus size: 355
1306056 GCACATTTTA
* * * * *
1306066 CCTCTCTGGTCGG-TTGAGCACCCGTATGCTCGTTTCGTGGGTTAACTTAGGCATTCGGAGTTCA
1 CCTCTCCGGTCGGCTT-AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
1306130 TCCCCAGTCTATGCATAAGGAGTTCTTTCCCAGTCTATGATCGGACCGGACCAAGGGTTGCAGCA
65 TTCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCAGCA
* * * * *
1306195 GCAAGACTAGTAGCAAGATCGACAGTACGCAGGGGGGACCGGGCCGATCCCCGGCTTGTGCATTC
130 GCAAGACCAGTAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTCGCGCATTC
* ** ** *
1306260 TGCCTCTTCGGCCGGTTGAGTTCCCGCATGCTTGTTTCGTGGGTTGGCTCAAGCATACAGAGTTC
195 TACCTCTTCGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTCAAG-ATACAGAGTTC
* * *
1306325 ATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTTTGCAGCGGGACCAGTAACACACAGAGGG
259 ATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTTGGCAGCGGGACCAGTAACACACAGAGGG
*
1306390 GGATCGGGCCGATCCTCGACTTGCGCATTATT
324 GGATCGGGCCGATCCTCGACTTGCGCATTATG
* * *
1306422 CCTCTCCGGCCGGCTCAGTGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGTCGGCTTAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * *
1306487 TCCCAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGAACCGAGGGTTGC-GACA
66 TCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCAG-CA
* ** ** *
1306551 GCAAGACCAGTAGCAGGATCGGTAGCACGCAGGGGGGGACCGGGTTGATCCCCGACTCGCGTATT
130 GCAAGACCAGTAGCAAGATCGACAGCACGCA-GGGGGGACCGGGCCGATCCCCGACTCGCGCATT
* * * *
1306616 CTACCTC-TCGGTCGACTGAGCGCCCGTATGCTCGTTTCGTGGGTTGGCT-TAGATGTACGGAGT
194 CTACCTCTTCGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTCAAGA--TACAGAGT
* * * **
1306679 TCATTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTG-TGGCAGCGGGATC-GATAGCACGTAGA
257 TCATTCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTTGGCAGCGGGACCAG-TAACACACAGA
*
1306742 GGGGGATCGGGCCGATCC-CTGACTTGTGCATTATG
321 GGGGGATCGGGCCGATCCTC-GACTTGCGCATTATG
* * * *
1306777 CCTCTCCGGTCGGCTTAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGATTTCAT
1 CCTCTCCGGTCGGCTTAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
1306842 TCCTAGTCTAAGCATACGGAGTTCATTCCCA
66 TCCCAGTCTAAGCATAAGGAGTTCATTCCCA
1306873 GTTTAACATC
Statistics
Matches: 386, Mismatches: 58, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
354 3 0.01
355 139 0.36
356 210 0.54
357 34 0.09
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (355 bp):
CCTCTCCGGTCGGCTTAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCGGACCGAACCAAGGGTTGCAGCAG
CAAGACCAGTAGCAAGATCGACAGCACGCAGGGGGGACCGGGCCGATCCCCGACTCGCGCATTCT
ACCTCTTCGGCCGACTGAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTCAAGATACAGAGTTCAT
TCCATGTCTAAGCCCCAACCGAACCGAGGGTTGTTGGCAGCGGGACCAGTAACACACAGAGGGGG
ATCGGGCCGATCCTCGACTTGCGCATTATG
Found at i:1308118 original size:26 final size:26
Alignment explanation
Indices: 1308081--1308133 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1308071 GTTGACTTAG
1308081 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
1308107 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
1308133 G
1 G
1308134 ATCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:1308257 original size:196 final size:196
Alignment explanation
Indices: 1307911--1308282 Score: 435
Period size: 196 Copynumber: 1.9 Consensus size: 196
1307901 GTTGACTTAG
* ** *
1307911 GCATACGTAGTGCACTCCCAGTCTAAGATCTGACCGAACTGAGGGTTGCGATAGCAGGACCCACA
1 GCATACGGAGTGCACTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGATAGCAGGACCCACA
** * ** * * *
1307976 GTGGGATCGACGGCACGCAGAGGGGATTGGGTCGATCCCCGGCTTGCGCATCCTGCCTCTCTAGC
66 GCAGGATCGACAGCACGCAGAGGGGATCAGGTCGATCCCCAGCTTACGCATCCTGCCTCTCGAGC
* ** *
1308041 CAACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAATCTA
131 CAACTGAGCGCCCACACGCTCATTTAATGGCTTGACTTAGGCATACGAAGTTCATCCCCAATCTA
1308106 A
196 A
* * *
1308107 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-AGACCGAGGGTTGCGATAGCAGGA-CTAG
1 GCATACGGAGTGCACTCCCAGTCTAAGATCAAACCGA-ACCGAGGGTTGCGATAGCAGGACCCA-
* * * * * * *
1308170 CAGCAGGATCGACAGCATGCAGGGGGGGTCAGGTTGATCTCTAGCTTACGCATTCTGCCTCTCCG
64 CAGCAGGATCGACAGCACGCAGAGGGGATCAGGTCGATCCCCAGCTTACGCATCCTGCCTCT-CG
* * *
1308235 A-CCGACTGAGTGCCCACACGCTCATTTAATGGCTTGGCTTAGGCATAC
128 AGCCAACTGAGCGCCCACACGCTCATTTAATGGCTTGACTTAGGCATAC
1308283 AGAGTTTATT
Statistics
Matches: 144, Mismatches: 29, Indels: 6
0.80 0.16 0.03
Matches are distributed among these distances:
195 3 0.02
196 139 0.97
197 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (196 bp):
GCATACGGAGTGCACTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGCGATAGCAGGACCCACA
GCAGGATCGACAGCACGCAGAGGGGATCAGGTCGATCCCCAGCTTACGCATCCTGCCTCTCGAGC
CAACTGAGCGCCCACACGCTCATTTAATGGCTTGACTTAGGCATACGAAGTTCATCCCCAATCTA
A
Found at i:1308465 original size:26 final size:26
Alignment explanation
Indices: 1308435--1308512 Score: 147
Period size: 26 Copynumber: 3.0 Consensus size: 26
1308425 GTTGACTTAG
*
1308435 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1308461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1308487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1308513 TATTGAACCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1308905 original size:45 final size:44
Alignment explanation
Indices: 1308806--1309008 Score: 163
Period size: 45 Copynumber: 4.5 Consensus size: 44
1308796 GGGCTCGACA
* * ** ** * *
1308806 TGTGCCGATGGTGGTTGAGGCAACTGCCCGCACCACAGCCCAGCA
1 TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCCA-CT
* * * *
1308851 GGTGTCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCCA-CT
* * * *
1308896 TGTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGGCCGACA
1 TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCC-ACT
* * * *
1308941 TGTGCCGATGGTGATCGAGGCAACTACCCACCCCAGGGCCCAGCT
1 TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCCA-CT
* * *
1308986 TGTGCCAATGGCGGTCGAGGCAA
1 TGTGCCGATGGTGATCGAGGCAA
1309009 GTGCTCGTAC
Statistics
Matches: 126, Mismatches: 30, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
44 1 0.01
45 124 0.98
46 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (44 bp):
TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGGCCACT
Found at i:1308964 original size:90 final size:90
Alignment explanation
Indices: 1308806--1309008 Score: 232
Period size: 90 Copynumber: 2.3 Consensus size: 90
1308796 GGGCTCGACA
* * * * *
1308806 TGTGCCGATGGTGGTTGAGGCAACTGCCCGCACCACAGCCCAGCAGGTGTCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACTACCCGCACCACAGCCCAGCAGGTGCCGATGGTGATCGAGG
* * *
1308871 CAACCACCCGCACCAGGGGCCATCT
66 CAACCACCCACACCAGGGCCCAGCT
* *
1308896 TGTGCCGATGGTGGTCGAGGCAA-TCACCCGCACCA-AGGGCC-GACATGTGCCGATGGTGATCG
1 TGTGCCGATGGTGGTCGAGGCAACT-ACCCGCACCACA-GCCCAG-CAGGTGCCGATGGTGATCG
* *
1308958 AGGCAACTACCCACCCCAGGGCCCAGCT
63 AGGCAACCACCCACACCAGGGCCCAGCT
* *
1308986 TGTGCCAATGGCGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1309009 GTGCTCGTAC
Statistics
Matches: 96, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
89 3 0.03
90 93 0.97
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACTACCCGCACCACAGCCCAGCAGGTGCCGATGGTGATCGAGG
CAACCACCCACACCAGGGCCCAGCT
Found at i:1310005 original size:26 final size:26
Alignment explanation
Indices: 1309962--1310012 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1309952 TGACTTAGGG
*
1309962 ATACAGAGTTCACCCCCATTCTAAGC
1 ATACAGAGTTCACCCCCAGTCTAAGC
* **
1309988 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCACCCCCAGTCTAAG
1310013 ATCAGACCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCACCCCCAGTCTAAGC
Found at i:1310340 original size:26 final size:26
Alignment explanation
Indices: 1310304--1310356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1310294 GTTGACTTAG
*
1310304 GCATACTGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
1310330 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
1310356 G
1 G
1310357 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:1310860 original size:45 final size:45
Alignment explanation
Indices: 1310809--1310952 Score: 198
Period size: 45 Copynumber: 3.2 Consensus size: 45
1310799 ATGCTCGACT
*
1310809 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCCAGCA
* * * ** *
1310854 TGTGCCGATGGTGTTCGATGCAACCGCCCACTTCATGGCCCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCCAGCA
* * *
1310899 TGTGCCGATGGTGGTTGAGGCAACCACCCACACCAAGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCCAGCA
1310944 TGTGCCGAT
1 TGTGCCGAT
1310953 TACGATCGAG
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 83 1.00
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCCAGCA
Found at i:1311942 original size:26 final size:26
Alignment explanation
Indices: 1311906--1311958 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1311896 GTTGACTTAG
*
1311906 GCATACGGAGTACA-TCCCTAGTCTAA
1 GCATACAGAGTACATTCCC-AGTCTAA
*
1311932 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGTCTAA
1311958 G
1 G
1311959 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTACATTCCCAGTCTAA
Found at i:1312295 original size:25 final size:25
Alignment explanation
Indices: 1312260--1312307 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
1312250 GTTGACTTAG
1312260 GCATACAGAGTTCATTCCCAGTCAA
1 GCATACAGAGTTCATTCCCAGTCAA
* *
1312285 GCATACGGAGTTCATTCTCAGTC
1 GCATACAGAGTTCATTCCCAGTC
1312308 TAAGATCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCAGTCAA
Found at i:1312856 original size:45 final size:46
Alignment explanation
Indices: 1312760--1312934 Score: 169
Period size: 45 Copynumber: 3.9 Consensus size: 46
1312750 GACCTGGGCT
* * *
1312760 CGGCATGTGCCGATGGTGGTCGAAGCAACCGCCTGCACC-ACGACC
1 CGGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAACGACC
* * * *
1312805 CAGCATGTGCCGATGGTGGTCGAGGGAATCGCCCGTACCAACGA-T
1 CGGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAACGACC
* * * *
1312850 TGGCATGTGCCGATGGT-GTTGAGGCAACCGCCCATACCAAC-TCC
1 CGGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAACGACC
* * * * **
1312894 CAGCTTGTGCCGATGGCGATCGAGGCAAGTGCCCGTACCAA
1 CGGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAA
1312935 AGGGCAACTT
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
44 33 0.32
45 66 0.64
46 4 0.04
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (46 bp):
CGGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAACGACC
Found at i:1312917 original size:89 final size:90
Alignment explanation
Indices: 1312761--1312934 Score: 219
Period size: 89 Copynumber: 1.9 Consensus size: 90
1312751 ACCTGGGCTC
** * *
1312761 GGCATGTGCCGATGGTGGTCGAAGCAACCGCCTGCACCACGACCCAGCATGTGCCGATGGTGGTC
1 GGCATGTGCCGATGGTGGTCGAAGCAACCGCCCACACCACGACCCAGCATGTGCCGATGGCGATC
*
1312826 GAGGGAA-TCGCCCGTACCAACGATT
66 GAGGCAAGT-GCCCGTACCAACGATT
* * * * *
1312851 GGCATGTGCCGATGGT-GTTGAGGCAACCGCCCATACCAAC-TCCCAGCTTGTGCCGATGGCGAT
1 GGCATGTGCCGATGGTGGTCGAAGCAACCGCCCACACC-ACGACCCAGCATGTGCCGATGGCGAT
1312914 CGAGGCAAGTGCCCGTACCAA
65 CGAGGCAAGTGCCCGTACCAA
1312935 AGGGCAACTT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
89 53 0.74
90 19 0.26
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.17
Consensus pattern (90 bp):
GGCATGTGCCGATGGTGGTCGAAGCAACCGCCCACACCACGACCCAGCATGTGCCGATGGCGATC
GAGGCAAGTGCCCGTACCAACGATT
Found at i:1314255 original size:26 final size:26
Alignment explanation
Indices: 1314219--1314271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1314209 GTTGACTTAG
* *
1314219 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1314245 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1314271 G
1 G
1314272 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1314787 original size:45 final size:45
Alignment explanation
Indices: 1314693--1314847 Score: 134
Period size: 45 Copynumber: 3.4 Consensus size: 45
1314683 GGGCTCATCA
* * ** * * ** *
1314693 TGTGTCGATGGTGGTCGTGGCAACTGTCCTCACAATAGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACTACCCGCACCAGGGCCCAGCT
* * * *
1314738 TGTGCCGATGGT-GTACGATGCAA-TCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGT-CGAGGCAACT-ACCCGCACCAGGGCCCAGCT
*
1314783 TGTGCCGATGGTGGTCGAGGCAACTACCTGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACTACCCGCACCAGGGCCCAGCT
**
1314828 TGTGCCGATGGCAGTCGAGG
1 TGTGCCGATGGTGGTCGAGG
1314848 TAAGTGCCGG
Statistics
Matches: 88, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 3 0.03
45 82 0.93
46 3 0.03
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACTACCCGCACCAGGGCCCAGCT
Found at i:1318842 original size:26 final size:26
Alignment explanation
Indices: 1318813--1318865 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1318803 GTTGACTTAG
* * *
1318813 GCATACGGAGTTTATCCCCATTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1318839 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1318865 G
1 G
1318866 TTCGAACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1319198 original size:26 final size:26
Alignment explanation
Indices: 1319168--1319220 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1319158 GTTGACTTAG
1319168 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* * *
1319194 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1319220 G
1 G
1319221 ATCGGGACCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1319731 original size:45 final size:45
Alignment explanation
Indices: 1319661--1319820 Score: 158
Period size: 45 Copynumber: 3.6 Consensus size: 45
1319651 CAGGGCTCGA
* * *
1319661 CATGTACCGATGGTGGTCGAGGCAACCACCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGATCGAGGCAACCACCCGCACCAAGGCCCAG
* * * * * * * *
1319706 CATGTGTCGATGGTGTTTGATGCAACCACCTGTACCAAGGGCCAT
1 CATGTGCCGATGGTGATCGAGGCAACCACCCGCACCAAGGCCCAG
* * *
1319751 CTTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAG
1 CATGTGCCGATGGTGATCGAGGCAACCACCCGCACCAAGGCCCAG
* * * *
1319796 CTTGGGCCGATGGCGGTCGAGGCAA
1 CATGTGCCGATGGTGATCGAGGCAA
1319821 GTGCCCATAC
Statistics
Matches: 91, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGATCGAGGCAACCACCCGCACCAAGGCCCAG
Found at i:1320797 original size:26 final size:26
Alignment explanation
Indices: 1320761--1320813 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1320751 GTTGGCTTAG
1320761 GCATACGAAGTTCATCTCCAGTCTAA
1 GCATACGAAGTTCATCTCCAGTCTAA
* * *
1320787 GCATATGAAGTTCATTTCCTGTCTAA
1 GCATACGAAGTTCATCTCCAGTCTAA
1320813 G
1 G
1320814 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATCTCCAGTCTAA
Found at i:1321594 original size:45 final size:45
Alignment explanation
Indices: 1321451--1321693 Score: 177
Period size: 45 Copynumber: 5.4 Consensus size: 45
1321441 GGGCTCGACC
* * * * *
1321451 TGTGCTGATGGTGGTCGAGGTAACCGCTCGTACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGGCCAGCA
* * * * * * * *
1321496 TGTGTCGATTGTGTTCGATGCAACCG-TCCGCACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCT-CGCACCAAGGGCCAGCA
* *
1321541 TGTACCGATGGTGGTCGAGGCAATCGCTCGCACCAAGGGCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGGCCAGCA
* ** * * * *
1321586 TGTGCCGATGGTGATCGAGTTAACTGCCCTCACC-AGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGG-CCAGCA
** * * *
1321631 TGTGCCGATGGTGGTCGAGGCAAGGGCCCGTACCAAAGGG-CAGCC
1 TGTGCCGATGGTGGTCGAGGCAACCGCTCGCACC-AAGGGCCAGCA
* *
1321676 TATGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
1321694 TGCTTGTGCC
Statistics
Matches: 152, Mismatches: 41, Indels: 10
0.75 0.20 0.05
Matches are distributed among these distances:
44 5 0.03
45 142 0.93
46 1 0.01
47 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGGCCAGCA
Found at i:1321666 original size:90 final size:90
Alignment explanation
Indices: 1321451--1321696 Score: 244
Period size: 90 Copynumber: 2.7 Consensus size: 90
1321441 GGGCTCGACC
* * * * * * *
1321451 TGTGCTGATGGTGGTCGAGGTAACCGCTCGTACCACGGCCCAGCATGTGTCGATTGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCTCGTACCAAGGGCCAGCATGTGCCGATGGTGATCGATG
* * * *
1321516 CAACCGTCCGCACTAGGGGCCATCT
66 CAACCGCCCGCACCAGGGCCCAGCT
* * *
1321541 TGTACCGATGGTGGTCGAGGCAATCGCTCGCACCAAGGGCCAGCATGTGCCGATGGTGATCGA-G
1 TGTGCCGATGGTGGTCGAGGCAACCGCTCGTACCAAGGGCCAGCATGTGCCGATGGTGATCGATG
* * *
1321605 TTAACTGCCCTCACCAGGGCCCAGCT
66 -CAACCGCCCGCACCAGGGCCCAGCT
** * * * * *
1321631 TGTGCCGATGGTGGTCGAGGCAAGGGCCCGTACCAAAGGG-CAGCCTATGCCGATGATGGTCGAT
1 TGTGCCGATGGTGGTCGAGGCAACCGCTCGTACC-AAGGGCCAGCATGTGCCGATGGTGATCGAT
1321695 GC
65 GC
1321697 TTGTGCCATC
Statistics
Matches: 126, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
89 1 0.01
90 119 0.94
91 6 0.05
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCTCGTACCAAGGGCCAGCATGTGCCGATGGTGATCGATG
CAACCGCCCGCACCAGGGCCCAGCT
Found at i:1322600 original size:26 final size:26
Alignment explanation
Indices: 1322570--1322622 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1322560 GTTGACTTAG
1322570 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1322596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1322622 G
1 G
1322623 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1323145 original size:45 final size:45
Alignment explanation
Indices: 1323094--1323234 Score: 174
Period size: 45 Copynumber: 3.1 Consensus size: 45
1323084 ATAGTGGTTG
* * * *
1323094 AGGCAACCGCCTGCACCACGGCCCAGCATGTGCCGATGGTGTTCG
1 AGGCAACCGCCAGCACCACGGCCCAGCTTGTGCCGATGGTGGTCA
* * * * * *
1323139 ATGCAACTGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCA
1 AGGCAACCGCCAGCACCACGGCCCAGCTTGTGCCGATGGTGGTCA
* *
1323184 AGGCAACCGCCAGCACCACGGCCCAGCTTGTGCCGATGGAGGTCG
1 AGGCAACCGCCAGCACCACGGCCCAGCTTGTGCCGATGGTGGTCA
1323229 AGGCAA
1 AGGCAA
1323235 GTGCCCGTAC
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 79 1.00
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.15
Consensus pattern (45 bp):
AGGCAACCGCCAGCACCACGGCCCAGCTTGTGCCGATGGTGGTCA
Found at i:1323780 original size:136 final size:136
Alignment explanation
Indices: 1323261--1323768 Score: 565
Period size: 136 Copynumber: 3.7 Consensus size: 136
1323251 CGAGATCGAT
* * * * * *
1323261 AGCAGCACGCAGAGGGGGACCGGGTCGATCCTTAGTTTATGCATCCTGCCTCTTCGGCCGGTTGA
1 AGCAGCACGTAGAGGGGGACCGGGTCGATCCTTAGCTTACGCATCCTGCCTCTCCGACCGGCTGA
** * * *
1323326 GCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCCATTCTAAGATCAG
66 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG
1323391 ACCAGTA-
131 A-CAG-AC
* ** * * * * *
1323398 A-CAGCACGTAGAGGAGGACCAAGTGGATCCTCAGCTTGCGCATCCTGCCGCTCCGATCGGCTGA
1 AGCAGCACGTAGAGGGGGACCGGGTCGATCCTTAGCTTACGCATCCTGCCTCTCCGACCGGCTGA
* * * * *
1323462 GCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGG
66 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG
*
1323527 ACCGAC
131 ACAGAC
* * * * * *
1323533 AGTAGCACATAGAGGGGGACTGGGCCAATCC-TCGACTTACGCATCCTGCCTCTCCGACCGGCTG
1 AGCAGCACGTAGAGGGGGACCGGGTCGATCCTTAG-CTTACGCATCCTGCCTCTCCGACCGGCTG
* ** *
1323597 AGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTG
65 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCG
*
1323662 GACTGAC
130 GACAGAC
* ** *
1323669 AGCAGCACGTAGAGGGGGATCGGG-CTGATCCTTAGCTTGTGCATACTGCCTCTCCGACCGGCTG
1 AGCAGCACGTAGAGGGGGACCGGGTC-GATCCTTAGCTTACGCATCCTGCCTCTCCGACCGGCTG
* * *
1323733 AGCCCCCGTACGCTCATTTCGTGGGTTGACTTAGGC
65 AGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
1323769 TTATGGAGTT
Statistics
Matches: 306, Mismatches: 60, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
134 1 0.00
135 5 0.02
136 297 0.97
137 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (136 bp):
AGCAGCACGTAGAGGGGGACCGGGTCGATCCTTAGCTTACGCATCCTGCCTCTCCGACCGGCTGA
GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGG
ACAGAC
Found at i:1323793 original size:272 final size:272
Alignment explanation
Indices: 1323301--1323793 Score: 659
Period size: 272 Copynumber: 1.8 Consensus size: 272
1323291 CTTAGTTTAT
* * * **
1323301 GCATCCTGCCTCTTCGGCCGGTTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACG
1 GCATCCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
*
1323366 AAGTTCATCCCCATTCTAAGATCAGACCAGTAACAGCACGTAGAGGAGGACCAAGTGGATCCTCA
66 AAGTTCATCCCCAGTCTAAGATCAGACCAGTAACAGCACGTAGAGGAGGACCAAGTGGATCCTCA
* * * *
1323431 GCTTGCGCATCCTGCCGCTCCGATCGGCTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGG
131 GCTTGCGCATACTGCCGCTCCGACCGGCTGAGCCCCCGCACACTCATTTCATGGGTTGACTTAGG
*
1323496 CATATGGAGTTCATTCCTAGTCTAAGATCGGACCGACAGTAGCACATAGAGGGGGACTGGGCCAA
196 CATATGGAGTTCAATCCTAGTCTAAGATCGGACCGACAGTAGCACATAGAGGGGGACTGGGCCAA
1323561 TCCTCGACTTAC
261 TCCTCGACTTAC
* **
1323573 GCATCCTGCCTCTCCGACCGGCTGAGCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACG
1 GCATCCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
* ** * * * **
1323638 AAGTTCATTCCCAGTCTAAGATTGGA-CTG-ACAGCAGCACGTAGAGGGGGATCGGGCT-GATCC
66 AAGTTCATCCCCAGTCTAAGATCAGACCAGTA-A-CAGCACGTAGAGGAGGACCAAG-TGGATCC
* * * * * *
1323700 TTAGCTTGTGCATACTGCCTCTCCGACCGGCTGAGCCCCCGTACGCTCATTTCGTGGGTTGACTT
128 TCAGCTTGCGCATACTGCCGCTCCGACCGGCTGAGCCCCCGCACACTCATTTCATGGGTTGACTT
* * *
1323765 AGGCTTATGGAGTTCAATCTTGGTCTAAG
193 AGGCATATGGAGTTCAATCCTAGTCTAAG
1323794 CCCCAATCGG
Statistics
Matches: 187, Mismatches: 31, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
270 1 0.01
271 3 0.02
272 182 0.97
273 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (272 bp):
GCATCCTGCCTCTCCGACCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACG
AAGTTCATCCCCAGTCTAAGATCAGACCAGTAACAGCACGTAGAGGAGGACCAAGTGGATCCTCA
GCTTGCGCATACTGCCGCTCCGACCGGCTGAGCCCCCGCACACTCATTTCATGGGTTGACTTAGG
CATATGGAGTTCAATCCTAGTCTAAGATCGGACCGACAGTAGCACATAGAGGGGGACTGGGCCAA
TCCTCGACTTAC
Found at i:1324812 original size:45 final size:45
Alignment explanation
Indices: 1324736--1324895 Score: 167
Period size: 45 Copynumber: 3.6 Consensus size: 45
1324726 TGGGGCTCGA
* *
1324736 CATGTGCCGATGGTGGTCGAGGCGACCGCCCGCACCATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * * * * *
1324781 CATGTGTCGATGGTGTTCGATGCAACTGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* ** * *
1324826 CTTGTGCCGATGGTGGTCGAGGCAACCGTTCACACTAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * * *
1324871 CTTGTACCGATGGCGATCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1324896 GTGCCCATGT
Statistics
Matches: 93, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
Found at i:1324901 original size:90 final size:90
Alignment explanation
Indices: 1324738--1324901 Score: 211
Period size: 90 Copynumber: 1.8 Consensus size: 90
1324728 GGGCTCGACA
* * * ** * * *
1324738 TGTGCCGATGGTGGTCGAGGCGACCGCCCGCACCATGGCCCAGCATGTGTCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCATGTACCGATGGCGATCGAGG
1324803 CAACTGCCCGCACCAGGGGCCATCT
66 CAACTGCCCGCACCAGGGGCCATCT
** * *
1324828 TGTGCCGATGGTGGTCGAGGCAACCGTTCACACTAGGGCCCAGCTTGTACCGATGGCGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCATGTACCGATGGCGATCGAGG
*
1324893 CAAGTGCCC
66 CAACTGCCC
1324902 ATGTCACGCC
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 61 1.00
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCATGTACCGATGGCGATCGAGG
CAACTGCCCGCACCAGGGGCCATCT
Found at i:1334994 original size:13 final size:13
Alignment explanation
Indices: 1334976--1335013 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1334966 ATGGTCGATG
1334976 CATGTGCCATCAC
1 CATGTGCCATCAC
1334989 CATGTGCCATCAC
1 CATGTGCCATCAC
*
1335002 CATGCGCCATCA
1 CATGTGCCATCA
1335014 TGTGCCATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.39, G:0.16, T:0.21
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1336719 original size:45 final size:45
Alignment explanation
Indices: 1336648--1336838 Score: 186
Period size: 45 Copynumber: 4.2 Consensus size: 45
1336638 CGGGGCTCGA
* *
1336648 CATGTGTCGATAGTGGTCGAGGCAACCGCCCATACCATGGCCCAG
1 CATGTGCCGATAGTGGTCGAGGCAACCGCCCATACCAAGGCCCAG
* * * * * * * *
1336693 CATGTGCCGAAAGTGTTCGATGCAACCGCCCGTATCAGGGGCCAT
1 CATGTGCCGATAGTGGTCGAGGCAACCGCCCATACCAAGGCCCAG
* * * *
1336738 CTTGTGCCGATGGTGGTCGAGACAACCGCTCATACCAAGGCCCAG
1 CATGTGCCGATAGTGGTCGAGGCAACCGCCCATACCAAGGCCCAG
* * ** *
1336783 CTTGTGCCGATGGTGGTCGAGGCAAGTGCCCATACCAAAGG-GCAG
1 CATGTGCCGATAGTGGTCGAGGCAACCGCCCATACC-AAGGCCCAG
*
1336828 CCTGTGCCGAT
1 CATGTGCCGAT
1336839 GATAGTCGAT
Statistics
Matches: 118, Mismatches: 27, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
45 114 0.97
46 4 0.03
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATAGTGGTCGAGGCAACCGCCCATACCAAGGCCCAG
Found at i:1336834 original size:90 final size:90
Alignment explanation
Indices: 1336650--1336839 Score: 211
Period size: 90 Copynumber: 2.1 Consensus size: 90
1336640 GGGCTCGACA
* * * * * *
1336650 TGTGTCGATAGTGGTCGAGGCAACCGCCCATACCATGGCCCAGCATGTGCCGAAAGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGACAACCGCCCATACCAAGGCCCAGCATGTGCCGAAAGTGGTCGAGG
* * * * *
1336715 CAACCGCCCGTATCAGGGGCCATCT
66 CAACCGCCCATACCAAGGGCCAGCC
* * **
1336740 TGTGCCGATGGTGGTCGAGACAACCGCTCATACCAAGGCCCAGCTTGTGCCGATGGTGGTCGAGG
1 TGTGCCGATGGTGGTCGAGACAACCGCCCATACCAAGGCCCAGCATGTGCCGAAAGTGGTCGAGG
**
1336805 CAAGTGCCCATACCAAAGGG-CAGCC
66 CAACCGCCCATACC-AAGGGCCAGCC
1336830 TGTGCCGATG
1 TGTGCCGATG
1336840 ATAGTCGATG
Statistics
Matches: 82, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 78 0.95
91 4 0.05
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGACAACCGCCCATACCAAGGCCCAGCATGTGCCGAAAGTGGTCGAGG
CAACCGCCCATACCAAGGGCCAGCC
Found at i:1337768 original size:26 final size:26
Alignment explanation
Indices: 1337721--1337773 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1337711 GTTGACTTAG
*
1337721 GCATACGAAGTTCATCCACAGTGTAA
1 GCATACGAAGTTCATCCACAGTCTAA
*
1337747 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGAAGTTCA-TCCACAGTCTAA
1337773 G
1 G
1337774 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCACAGTCTAA
Found at i:1338105 original size:26 final size:26
Alignment explanation
Indices: 1338076--1338128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1338066 GTTGACTTAG
*
1338076 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1338102 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1338128 G
1 G
1338129 ATTAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1339976 original size:26 final size:26
Alignment explanation
Indices: 1339940--1339992 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1339930 GTTGACTTAG
1339940 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
1339966 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCATTCTAA
1339992 G
1 G
1339993 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCATTCTAA
Found at i:1340542 original size:45 final size:44
Alignment explanation
Indices: 1340406--1340562 Score: 170
Period size: 45 Copynumber: 3.5 Consensus size: 44
1340396 AGTCGGTTCG
* * *
1340406 GTGCTGATGGTGGTCGAGGCAACCAGCCGCACCATGGCCCAGCAT
1 GTGCCGATGGTGGTCGAGGCAA-CAGCCGCACCAGGGCCCAGCTT
* * * * * * * *
1340451 ATGCCGATGGTGTTCGACGAAACCGTCCGCACTAGGGTCCATCTT
1 GTGCCGATGGTGGTCGAGGCAACAG-CCGCACCAGGGCCCAGCTT
1340496 GTGCCGATGGTGGTCGAGGCAACAGCCTGCACCAGGGCCCAGCTT
1 GTGCCGATGGTGGTCGAGGCAACAGCC-GCACCAGGGCCCAGCTT
* *
1340541 GTGCCAATGGCGGTCGAGGCAA
1 GTGCCGATGGTGGTCGAGGCAA
1340563 GTGCCTGTAC
Statistics
Matches: 89, Mismatches: 21, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
44 4 0.04
45 85 0.96
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (44 bp):
GTGCCGATGGTGGTCGAGGCAACAGCCGCACCAGGGCCCAGCTT
Found at i:1340623 original size:13 final size:13
Alignment explanation
Indices: 1340605--1340629 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1340595 ATGGTGGATG
1340605 CATGTGCCATCAC
1 CATGTGCCATCAC
1340618 CATGTGCCATCA
1 CATGTGCCATCA
1340630 TGTGCCATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1341402 original size:45 final size:45
Alignment explanation
Indices: 1341336--1341489 Score: 175
Period size: 45 Copynumber: 3.4 Consensus size: 45
1341326 CGATTCGGTA
* * *
1341336 CCGATGGTGGTCGAGGTAACCAGCCACACCATGGCCCAGCATGTG
1 CCGATGGTGGTCGAGGCAACCAGCCACACCAGGGCCCAGCTTGTG
* * * * * * *
1341381 CTGATGGTGTTCGATGCAACCATCCACACCGGGGTCCATCTTGTG
1 CCGATGGTGGTCGAGGCAACCAGCCACACCAGGGCCCAGCTTGTG
*
1341426 CCGATGGTGGTCGAGGCAA-CAGCCTGCACCAGGGCCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACCAGCC-ACACCAGGGCCCAGCTTGTG
* *
1341471 CCAATGGCGGTCGAGGCAA
1 CCGATGGTGGTCGAGGCAA
1341490 GTGCCTGTAC
Statistics
Matches: 88, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
44 4 0.05
45 84 0.95
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACCAGCCACACCAGGGCCCAGCTTGTG
Found at i:1341550 original size:13 final size:13
Alignment explanation
Indices: 1341532--1341556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1341522 ATGGTCGATG
1341532 CATGTGCCATCAC
1 CATGTGCCATCAC
1341545 CATGTGCCATCA
1 CATGTGCCATCA
1341557 TGTGCCATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1342657 original size:45 final size:44
Alignment explanation
Indices: 1342560--1342661 Score: 118
Period size: 44 Copynumber: 2.3 Consensus size: 44
1342550 GAGAGGTCAT
* *
1342560 CTTGTGCCGATGGTGGTCAAGGCAATGCCTGCACCAAGGGCCGG
1 CTTGTGCCGATGGTGATCAAGGCAATGCCTGCACCAAGGGCCAG
* * *
1342604 CATGTGCCGATGGTGATCGAGGCAACTG-CT-CACACCAGGGCCCAG
1 CTTGTGCCGATGGTGATCAAGGCAA-TGCCTGCAC-CAAGGG-CCAG
1342649 CTTGTGCCGATGG
1 CTTGTGCCGATGG
1342662 CGGTTGAGGC
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
43 3 0.06
44 29 0.59
45 17 0.35
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (44 bp):
CTTGTGCCGATGGTGATCAAGGCAATGCCTGCACCAAGGGCCAG
Found at i:1343539 original size:26 final size:26
Alignment explanation
Indices: 1343503--1343555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1343493 CTTGACTTAG
1343503 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1343529 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1343555 G
1 G
1343556 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1343873 original size:26 final size:26
Alignment explanation
Indices: 1343837--1343889 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1343827 GTTGACTTAG
*
1343837 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
1343863 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1343889 G
1 G
1343890 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1344486 original size:45 final size:45
Alignment explanation
Indices: 1344321--1344488 Score: 160
Period size: 45 Copynumber: 3.7 Consensus size: 45
1344311 TGGTCGATCG
* * * * **
1344321 GGGCTCAACATGTGTCGATGGTGGTCGAGACAACCGCCTGCACC-
1 GGGCCCAACTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
* * * * *
1344365 GCAGCCC-AGTATGTGCCGATGGTGTTCGACGCAACTGCCCACACCA
1 G-GGCCCAACT-TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
* * * *
1344411 GGGGCCATCTTGTGCCAATGGTGGTTGAGGCAACCGCCCACACCA
1 GGGCCCAACTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
*
1344456 GGGCCCAACTTGTGCCGATGGCGGTCGAGGCAA
1 GGGCCCAACTTGTGCCGATGGTGGTCGAGGCAA
1344489 GTGCTCGACC
Statistics
Matches: 95, Mismatches: 25, Indels: 7
0.75 0.20 0.06
Matches are distributed among these distances:
44 2 0.02
45 91 0.96
46 2 0.02
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
GGGCCCAACTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
Found at i:1345350 original size:26 final size:26
Alignment explanation
Indices: 1345305--1345357 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1345295 GTTGACTTGG
1345305 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
1345331 GCATACGGGGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1345357 G
1 G
1345358 ATCGGACAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1345834 original size:90 final size:89
Alignment explanation
Indices: 1345687--1345864 Score: 203
Period size: 90 Copynumber: 2.0 Consensus size: 89
1345677 TGTGTCGATG
** * * * *
1345687 GTGGTCGAGGCAATTGCCCGCACATGGCCCAACATGTGCCAATGGTGTTCGATGCAACCGCCCGC
1 GTGGTCGAGGCAATCACCCGCACAAGGCCCAACATGTGCCAATGGTGATCAAGGCAACCGCCCGC
* *
1345752 ACCAGGGGCCATCTTATGCTGATA
66 ACCAGGGCCCAACTTATGCTGATA
* ** * * **
1345776 GTGGTCGAGGCAATCACCCGCACCAAGGGCCGGCATGTGTCGATGGTGATCAAGGCAACCGCTTG
1 GTGGTCGAGGCAATCACCCGCA-CAAGGCCCAACATGTGCCAATGGTGATCAAGGCAACCGCCCG
*
1345841 CACCAGGGCCCAACTTGTGCTGAT
65 CACCAGGGCCCAACTTATGCTGAT
1345865 GGCAGTCGAG
Statistics
Matches: 72, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
89 20 0.28
90 52 0.72
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (89 bp):
GTGGTCGAGGCAATCACCCGCACAAGGCCCAACATGTGCCAATGGTGATCAAGGCAACCGCCCGC
ACCAGGGCCCAACTTATGCTGATA
Found at i:1347481 original size:45 final size:44
Alignment explanation
Indices: 1347367--1347482 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 44
1347357 TGGGGCTCAA
* * * * *
1347367 CATGTGCCGATGGTAGTCGAGGCAACTGCCCGCACACGACCCAG
1 CATGTGCTGATGGTGGTCAAGGCAACCGCCCGCACAAGACCCAG
* * * * *
1347411 CATGTGCTGATGGTGTTCGATGCAACCGCCCGCACCAAGAGCCAT
1 CATGTGCTGATGGTGGTCAAGGCAACCGCCCGCA-CAAGACCCAG
* *
1347456 CTTGTGCTGATTGTGGTCAAGGCAACC
1 CATGTGCTGATGGTGGTCAAGGCAACC
1347483 ACTCACACCA
Statistics
Matches: 58, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
44 29 0.50
45 29 0.50
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (44 bp):
CATGTGCTGATGGTGGTCAAGGCAACCGCCCGCACAAGACCCAG
Found at i:1348501 original size:26 final size:26
Alignment explanation
Indices: 1348465--1348517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1348455 GTTGACTTAG
1348465 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1348491 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1348517 G
1 G
1348518 ATCATACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1348858 original size:26 final size:26
Alignment explanation
Indices: 1348820--1348898 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
1348810 GTTGACTTAG
* *
1348820 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1348846 GCATACGGTGTTCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1348872 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1348898 G
1 G
1348899 ATCGGATCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1349494 original size:45 final size:45
Alignment explanation
Indices: 1349353--1349508 Score: 141
Period size: 45 Copynumber: 3.5 Consensus size: 45
1349343 GCTCGACATG
* * * *
1349353 TGCCGATAGTGGTTGAGGCAATCGCCCGCACCATGGCCCAGCATA
1 TGCCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTA
* * * * * * * ** *
1349398 TGCCAATGGTGTTCGATGTAACCACTCGCACCAGGGGTCATCTTA
1 TGCCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTA
* * *
1349443 TACCGATAGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTG
1 TGCCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTA
* *
1349488 TGCCGATGGCGGTCGAGGCAA
1 TGCCGATAGTGGTCGAGGCAA
1349509 GTGCCCATAC
Statistics
Matches: 81, Mismatches: 30, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (45 bp):
TGCCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTA
Found at i:1350122 original size:45 final size:45
Alignment explanation
Indices: 1350042--1350251 Score: 215
Period size: 45 Copynumber: 4.7 Consensus size: 45
1350032 AAGGGTCGAT
* * * * *
1350042 CAGGGCTCGGCATGTACCGGTGATGGTCGAGGCAACCGCCTGCAC
1 CAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCAC
* * * * *
1350087 CACGGCCCAGCATGTGCTGATGGTGTTCGATGCAACCGCCCGCAC
1 CAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCAC
* * * * *
1350132 CAGGGGCCATCTTGTGCCGATGGTGGACGAGGCAATCGCCTGCAC
1 CAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCAC
** * *
1350177 CAAGGG-CTGGCATGTGCTGATGGTGATCGAGGCAACCGCCTGCAC
1 C-AGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCAC
* *
1350222 CAGGGCCCAGCTTGTGCCGATGATGGTCGA
1 CAGGGCCCAGCATGTGCCGATGGTGGTCGA
1350252 TGTATGTGCC
Statistics
Matches: 129, Mismatches: 34, Indels: 4
0.77 0.20 0.02
Matches are distributed among these distances:
44 4 0.03
45 121 0.94
46 4 0.03
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (45 bp):
CAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCAC
Found at i:1350283 original size:90 final size:90
Alignment explanation
Indices: 1350062--1350247 Score: 264
Period size: 90 Copynumber: 2.1 Consensus size: 90
1350052 CATGTACCGG
* * * * * *
1350062 TGATGGTCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCTGATGGTGTTCGATGCAACCGCC
1 TGATGGACGAGGCAATCGCCTGCACCAAGGGCCAGCATGTGCTGATGGTGATCGAGGCAACCGCC
* *
1350127 CGCACCAGGGGCCATCTTGTGCCGA
66 CGCACCAGGGCCCAGCTTGTGCCGA
* **
1350152 TGGTGGACGAGGCAATCGCCTGCACCAAGGGCTGGCATGTGCTGATGGTGATCGAGGCAACCGCC
1 TGATGGACGAGGCAATCGCCTGCACCAAGGGCCAGCATGTGCTGATGGTGATCGAGGCAACCGCC
*
1350217 TGCACCAGGGCCCAGCTTGTGCCGA
66 CGCACCAGGGCCCAGCTTGTGCCGA
1350242 TGATGG
1 TGATGG
1350248 TCGATGTATG
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (90 bp):
TGATGGACGAGGCAATCGCCTGCACCAAGGGCCAGCATGTGCTGATGGTGATCGAGGCAACCGCC
CGCACCAGGGCCCAGCTTGTGCCGA
Found at i:1351176 original size:26 final size:26
Alignment explanation
Indices: 1351140--1351192 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1351130 GTTGACTTAG
*
1351140 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1351166 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1351192 G
1 G
1351193 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1351312 original size:196 final size:196
Alignment explanation
Indices: 1350985--1351346 Score: 458
Period size: 196 Copynumber: 1.8 Consensus size: 196
1350975 CATAGTGCGG
* * * * *
1350985 TCCCAGTCTAAGATTGGACCGGACCTATGGTTGCAGTAGCAAGACCCGCAGAGGGATCGACAGCA
1 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCACTAGCAAGACCAGCAGAAGGATCGACAGCA
** * * * * * * *
1351050 TGCAGAAGGGATCGGGTCGATCCTCGGCTTGCGTATCCTGCCTCTCTGGCCGGTTAAGCGCCCGC
66 CACAGAAGGGATCGGGTCGATCCTCGACTTACGCATCCTGCCTCTCCGACCGGCTAAGCACCCGC
* * *
1351115 ACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
131 ACGCTCATTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
1351180 T
196 T
* * * *
1351181 TCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGACT-GCAGGACCAGCA-ATAGGATCGATAG
1 TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC-ACTAGCAAGACCAGCAGA-AGGATCGACAG
* * * *
1351244 CACACAGGAGGGATCGGGTCGATCCTCGACTTACGCATTCTGCCTCTCCGACCGGCTGAGTACCC
64 CACACAGAAGGGATCGGGTCGATCCTCGACTTACGCATCCTGCCTCTCCGACCGGCTAAGCACCC
*
1351309 GCACGCTCATTTCATGGGTTGGCTTAGACATACGGAGT
129 GCACGCTCATTTCATGGGTTGACTTAGACATACGGAGT
1351347 GCATTCCATG
Statistics
Matches: 138, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
195 1 0.01
196 135 0.98
197 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
TCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCACTAGCAAGACCAGCAGAAGGATCGACAGCA
CACAGAAGGGATCGGGTCGATCCTCGACTTACGCATCCTGCCTCTCCGACCGGCTAAGCACCCGC
ACGCTCATTTCATGGGTTGACTTAGACATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
T
Found at i:1352050 original size:45 final size:45
Alignment explanation
Indices: 1351998--1352158 Score: 160
Period size: 45 Copynumber: 3.6 Consensus size: 45
1351988 CTGGGGCTCG
* * *
1351998 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCAACATGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
* * * * *
1352043 GCATGTGCCGATGGTGTTCGATGCAACCACCTGCACCAAGGGCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
* * * * * * *
1352088 TCTTGTACCGATGGTGGTTGAGGAAACTACCCGCACCAGGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
* * *
1352133 ACTTGTGCCTATGGCGGTCGAGGCAA
1 ACATGTGCCGATGGTGGTCGAGGCAA
1352159 ATGCCCGTAC
Statistics
Matches: 91, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (45 bp):
ACATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
Found at i:1353135 original size:26 final size:26
Alignment explanation
Indices: 1353099--1353151 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1353089 GTTGACTTAG
1353099 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
1353125 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
1353151 G
1 G
1353152 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:1353440 original size:26 final size:26
Alignment explanation
Indices: 1353410--1353462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1353400 GTTGACTTAG
*
1353410 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1353436 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1353462 G
1 G
1353463 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1354016 original size:45 final size:45
Alignment explanation
Indices: 1353889--1354090 Score: 128
Period size: 45 Copynumber: 4.5 Consensus size: 45
1353879 GGGCTCGACA
** * * *
1353889 TGTGCCGATGGTGGTCGAGGCAACCGTCCGCACC-ACGGCC-TGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGGCCAT--CT
* * * * ** *
1353934 TGT-ACGATGGTGTTCGATGCAACCGCCCGTACTAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGGCCATCT
* *
1353978 TGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGG--ATGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGGCCAT--CT
* * * * *
1354023 TGTACCGATGGTGATCGAGGCAACCGCCCGCACC-AGGGCCTAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGGCC-ATCT
* *
1354068 TGTGTCGATGCTGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1354091 GTGCCCGTAC
Statistics
Matches: 121, Mismatches: 28, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
43 2 0.02
44 32 0.26
45 85 0.70
46 1 0.01
47 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGGCCATCT
Found at i:1354061 original size:89 final size:90
Alignment explanation
Indices: 1353889--1354090 Score: 255
Period size: 90 Copynumber: 2.3 Consensus size: 90
1353879 GGGCTCGACA
** * * * * *
1353889 TGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCACGGCCTGGCATGTACGATGGTGTTCGATGC
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGCATGGCATGTACGATGGTGATCGAGGC
* *
1353954 AACCGCCCGTACTAAGGGCC-ATCT
66 AACCGCCCGCACTAAGGGCCTAGCT
* *
1353978 TGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGGATGGCATGTACCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGCATGGCATGTA-CGATGGTGATCGAGG
*
1354043 CAACCGCCCGCAC-CAGGGCCTAGCT
65 CAACCGCCCGCACTAAGGGCCTAGCT
* *
1354068 TGTGTCGATGCTGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1354091 GTGCCCGTAC
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
89 48 0.49
90 49 0.51
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAAGGCATGGCATGTACGATGGTGATCGAGGC
AACCGCCCGCACTAAGGGCCTAGCT
Found at i:1356063 original size:26 final size:26
Alignment explanation
Indices: 1356027--1356077 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1356017 TGACTTAGGC
1356027 ATATAGAGTTCATCCCCAGTCTAAGG
1 ATATAGAGTTCATCCCCAGTCTAAGG
*
1356053 ATATAGAGTTCATTCCCAGTCTAAG
1 ATATAGAGTTCATCCCCAGTCTAAG
1356078 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATATAGAGTTCATCCCCAGTCTAAGG
Found at i:1356258 original size:26 final size:26
Alignment explanation
Indices: 1356222--1356274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1356212 GTTGACTTAG
*
1356222 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
* *
1356248 GCATATGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
1356274 G
1 G
1356275 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAGTCTAA
Found at i:1356445 original size:196 final size:195
Alignment explanation
Indices: 1355870--1356445 Score: 656
Period size: 197 Copynumber: 2.9 Consensus size: 195
1355860 CGTAGTGCGC
* * * *
1355870 TCCCACTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGAAGGACCT-GTAGCAGGATCGACAGC
1 TCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGA-CTAGCAGCAGGATCGACAGC
* * * * * * * * * *
1355934 ACGTAGAGGGGATCGGGTTGAATCTCGGCTTGGGCATCCTGCCTCTCTGGCCGGCTGAGTGCCCG
65 ACGTAGGGGGGACCGGGTCG-ATCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCG
* * * *
1355999 CAAGCTCGTTTCGTGGGTTGACTTAGGCATA-TAGAGTTCATCCCCAGTCTAAGGATATAGAGTT
129 CATGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATATAGAGTC
1356063 CAT
193 CAT
* * * * *
1356066 TCCCAGTCTAAGATCAGACCAGACTGAGGTTTACGGTAGCAGGACTAGCAGCAAGATCGACAGCA
1 TCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGACTAGCAGCAGGATCGACAGCA
* * * * * * *** * *
1356131 CATAGGGGCAGACCGGGCCGATTCCTGACTTACGCATTCTGCCTGTCCAATCGACTGAGCACCCA
66 CGTAGGGG-GGACCGGGTCGA-TCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCG
* * *
1356196 CATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTCC
129 CATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAGTCC
1356261 AT
194 AT
* **
1356263 TCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCAGGACTAGCAGCAGGATCGACAGCA
1 TCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGACTAGCAGCAGGATCGACAGCA
* *
1356328 CGCAGGGGGGACCGGGTCGATCCCCGACTTGCGCATTTTGCCTCTCCGGCCGACTGAGCGCCCGC
66 CGTAGGGGGGACCGGGTCGAT-CCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGC
* *
1356393 ATGCTCATTTCGTGGGTT-AGCTTAGGCATACGAAGTTCAT-TCCATGTCTAAGC
130 ATGCTCGTTTCGTGGGTTGA-CTTAGGCATACGAAGTTCATCCCCA-GTCTAAGC
1356446 CCCAGTCGGA
Statistics
Matches: 311, Mismatches: 62, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
195 7 0.02
196 147 0.47
197 157 0.50
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (195 bp):
TCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGTAGCAGGACTAGCAGCAGGATCGACAGCA
CGTAGGGGGGACCGGGTCGATCCCGACTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCA
TGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATATAGAGTCCAT
Found at i:1356607 original size:26 final size:26
Alignment explanation
Indices: 1356577--1356629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1356567 GTTGACTTAG
*
1356577 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1356603 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1356629 G
1 G
1356630 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1357173 original size:45 final size:45
Alignment explanation
Indices: 1357046--1357214 Score: 176
Period size: 45 Copynumber: 3.8 Consensus size: 45
1357036 TCGGGGGCCA
* * *
1357046 ACCAGGGCTCAGCATGTACCGATGGTGGTCGAGGCAACCGCCCGC
1 ACCAGGGCCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGC
* ** * * * * **
1357091 ACCATGGCCCAGCAAGAGCCGATGGTGTTTGATGCAACCGCCCAT
1 ACCAGGGCCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGC
* * * *
1357136 ACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCACCCGC
1 ACCAGGGCCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGC
* *
1357181 ACCAGGGCCCAGCTTGTACCGATGGCGGTCGAGG
1 ACCAGGGCCCAGCTTGTGCCGATGGTGGTCGAGG
1357215 TAAGTGCTCG
Statistics
Matches: 96, Mismatches: 28, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.16
Consensus pattern (45 bp):
ACCAGGGCCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGC
Found at i:1358501 original size:26 final size:26
Alignment explanation
Indices: 1358467--1358516 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1358457 GACTTAGGCA
1358467 TACGAAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
*
1358493 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
1358517 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:1359107 original size:45 final size:45
Alignment explanation
Indices: 1358960--1359116 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
1358950 GGCTTGGTAA
* * * * * *
1358960 GTGCCGATGATGGTCAAGGCAATCGCCCGCACCACGTCCCAGCAT
1 GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTT
** * * * *
1359005 GTGCCGATGGTCTTCGATGTAACCGCCCGTACCAAGGG-CCATCTT
1 GTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTT
** *
1359050 GTGCTAAAGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTT
1 GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTT
1359095 GTGCCGATGGTGGGT-GAGGCAA
1 GTGCCGATGGT-GGTCGAGGCAA
1359117 GTGCCTGTAC
Statistics
Matches: 85, Mismatches: 24, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
44 4 0.05
45 76 0.89
46 5 0.06
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTT
Found at i:1359415 original size:13 final size:12
Alignment explanation
Indices: 1359382--1359411 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
1359372 ACTGGTACTT
1359382 GGCCCCTATATC
1 GGCCCCTATATC
1359394 GGCCCCTATATC
1 GGCCCCTATATC
1359406 GGCCCC
1 GGCCCC
1359412 CTATCCCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.47, G:0.20, T:0.20
Consensus pattern (12 bp):
GGCCCCTATATC
Found at i:1360096 original size:26 final size:26
Alignment explanation
Indices: 1360059--1360111 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1360049 GTTGACTTAG
*
1360059 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1360085 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1360111 G
1 G
1360112 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1360383 original size:158 final size:157
Alignment explanation
Indices: 1360135--1360428 Score: 369
Period size: 158 Copynumber: 1.9 Consensus size: 157
1360125 GAGGGTTGCA
* * ** *
1360135 GCAGCAGGATCGGTAGCACGCAGGGGGGACCGGGCCAATCCCCGGCTTGTGCATTCTGCCTCATC
1 GCAGCAGGACCGGTAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCATC
* * * * * * * *
1360200 GGTCGGTTGAGTCCCCGCTCGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCC-ATG
66 GGCCGGCTCAGACCCCGCTCACTCGTTTTATGGGTTGACTCAGGCATACAGAGTTCATTCCTA-G
1360264 TCTAAGCCCCAACCGGACCGAGGTTGTG
130 TCTAAGCCCCAACCGGACCGAGGTTGTG
* * *
1360292 GCAGTAGGACCGGTAGCACACAGAGGGGGATCGGGCCAATCCCCGGCTTACGCATTATGCCTCTT
1 GCAGCAGGACCGGTAGCACACAG-GGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCAT
* *
1360357 CGGCCTGCTCA-ACGCCCG-TACACTCGTTTTGTGGGTTGACTCAGGCATACAGAGTTCATTCCT
65 CGGCCGGCTCAGAC-CCCGCT-CACTCGTTTTATGGGTTGACTCAGGCATACAGAGTTCATTCCT
1360420 AGTCTAAGC
128 AGTCTAAGC
1360429 ATACGAAGTT
Statistics
Matches: 115, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
157 22 0.19
158 92 0.80
159 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (157 bp):
GCAGCAGGACCGGTAGCACACAGGGGGGACCGGGCCAATCCCCGGCTTACGCATTATGCCTCATC
GGCCGGCTCAGACCCCGCTCACTCGTTTTATGGGTTGACTCAGGCATACAGAGTTCATTCCTAGT
CTAAGCCCCAACCGGACCGAGGTTGTG
Found at i:1360430 original size:26 final size:26
Alignment explanation
Indices: 1360401--1360453 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1360391 GTTGACTCAG
*
1360401 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
1360427 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1360453 G
1 G
1360454 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1360961 original size:45 final size:45
Alignment explanation
Indices: 1360890--1361083 Score: 181
Period size: 45 Copynumber: 4.3 Consensus size: 45
1360880 TCGAGGCTCG
* * *
1360890 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCATGGCCCA
1 GCATGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAAGGCCCA
* * *
1360935 GCATGTGCCGATGGTGTTCAATGCAACCGCCCGTACCAAGGGCCA
1 GCATGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAAGGCCCA
* * * ** *
1360980 TCTTGTGCCGATGGTGGTCAAGGCAATCGCCCGTACCAAGGGTCG
1 GCATGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAAGGCCCA
* * * * ** ** * *
1361025 GTATATGCCAATGGTGATGGAGGCAACCGCCCACACTAGGGCCCA
1 GCATGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAAGGCCCA
*
1361070 GCTTGTGCCGATGG
1 GCATGTGCCGATGG
1361084 CGGTGAGGCA
Statistics
Matches: 116, Mismatches: 33, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 116 1.00
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAAGGCCCA
Found at i:1361051 original size:90 final size:90
Alignment explanation
Indices: 1360893--1361083 Score: 206
Period size: 90 Copynumber: 2.1 Consensus size: 90
1360883 AGGCTCGGCA
* * * * * *
1360893 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCAATG
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGCCCAGCATATGCCAATGGTGATCAAGG
*
1360958 CAACCGCCCGTAC-CAAGGG-CCATCT
66 CAACCGCCC--ACACAAGGGCCCAGCT
* * ** * * **
1360983 TGTGCCGATGGTGGTCAAGGCAATCGCCCGTACCAAGGGTCGGTATATGCCAATGGTGATGGAGG
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGCCCAGCATATGCCAATGGTGATCAAGG
*
1361048 CAACCGCCCACACTAGGGCCCAGCT
66 CAACCGCCCACACAAGGGCCCAGCT
1361073 TGTGCCGATGG
1 TGTGCCGATGG
1361084 CGGTGAGGCA
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
88 2 0.02
89 5 0.06
90 76 0.92
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGCCCAGCATATGCCAATGGTGATCAAGG
CAACCGCCCACACAAGGGCCCAGCT
Found at i:1362508 original size:45 final size:45
Alignment explanation
Indices: 1362427--1362616 Score: 150
Period size: 45 Copynumber: 4.2 Consensus size: 45
1362417 TCGAGGGTCG
* * *
1362427 ACCAGGGCTCAGCATGTG-CAATGGTAG-TCGAGGCAACCGCCCGC
1 ACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAGGCAACCGCCCGC
* * *
1362471 ACCACGGCCCAGCATGTTCCGATGGTGTTCGATGCAACCGCCCGC
1 ACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGC
* * * * * * *
1362516 ACCAAGGGCCATCTTGTGCCGATGGTGGTCCAGGCAATCGCCTGC
1 ACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGC
* ** ** * * * *
1362561 ACCAAGGGCTGGCACATACTGATGGTGATCGAGGCAACCGCCTGC
1 ACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGC
*
1362606 ACCAGGGCCCA
1 ACCAAGGCCCA
1362617 TCTTGTACCT
Statistics
Matches: 114, Mismatches: 30, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
44 16 0.14
45 98 0.86
ACGTcount: A:0.21, C:0.33, G:0.30, T:0.16
Consensus pattern (45 bp):
ACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGC
Found at i:1362564 original size:90 final size:90
Alignment explanation
Indices: 1362447--1362641 Score: 212
Period size: 90 Copynumber: 2.2 Consensus size: 90
1362437 AGCATGTGCA
* * ** * * *
1362447 ATGGTAGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTTCCGATGGTGTTCGATGCAACCGC
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACATACCGATGGTGATCGAGGCAACCGC
*
1362512 CCGCACCAAGGG-CCATCTTGTGCCG
66 CCGCACC-AGGGCCCATCTTGTACCG
* * * * ** *
1362537 ATGGTGGTCCAGGCAATCGCCTGCACCAAGGGCTGGCACATACTGATGGTGATCGAGGCAACCGC
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACATACCGATGGTGATCGAGGCAACCGC
* *
1362602 CTGCACCAGGGCCCATCTTGTACCT
66 CCGCACCAGGGCCCATCTTGTACCG
*
1362627 ATGGCGGTCGAGGCA
1 ATGGTGGTCGAGGCA
1362642 TGTGGGCAGC
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
89 4 0.05
90 81 0.95
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.17
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCACATACCGATGGTGATCGAGGCAACCGC
CCGCACCAGGGCCCATCTTGTACCG
Found at i:1362638 original size:45 final size:46
Alignment explanation
Indices: 1362447--1362641 Score: 168
Period size: 45 Copynumber: 4.3 Consensus size: 46
1362437 AGCATGTGCA
* * * * *
1362447 ATGGTAGTCGAGGCAACCGCCCGCACC-ACGGCCCAGCATGTTCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCCATCTTGTACCG
* * *
1362492 ATGGTGTTCGATGCAACCGCCCGCACCAAGGG-CCATCTTGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCCATCTTGTACCG
* * * * * *
1362537 ATGGTGGTCCAGGCAATCGCCTGCACCAAGGGCTGGCA-C--ATACTG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC--CCATCTTGTACCG
* * *
1362582 ATGGTGATCGAGGCAACCGCCTGCACC-AGGGCCCATCTTGTACCT
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCCATCTTGTACCG
*
1362627 ATGGCGGTCGAGGCA
1 ATGGTGGTCGAGGCA
1362642 TGTGGGCAGC
Statistics
Matches: 118, Mismatches: 25, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 104 0.88
46 3 0.03
47 1 0.01
48 2 0.02
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.17
Consensus pattern (46 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCCATCTTGTACCG
Found at i:1363606 original size:26 final size:26
Alignment explanation
Indices: 1363576--1363625 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
1363566 GACTTAGGCC
1363576 TACGGAGTTCA-TCCCTAGTCTAAGCA
1 TACGGAGTTCATTCCC-AGTCTAAGCA
1363602 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1363626 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:1363925 original size:26 final size:26
Alignment explanation
Indices: 1363896--1363948 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1363886 GTAGACTTAG
* *
1363896 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1363922 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1363948 G
1 G
1363949 ATAGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1364309 original size:13 final size:13
Alignment explanation
Indices: 1364291--1364315 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1364281 GATGTCGATG
1364291 CATGTGCCATCAC
1 CATGTGCCATCAC
1364304 CATGTGCCATCA
1 CATGTGCCATCA
1364316 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1366163 original size:26 final size:26
Alignment explanation
Indices: 1366133--1366185 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1366123 GTTGACTTAG
1366133 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
1366159 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1366185 G
1 G
1366186 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1366332 original size:197 final size:194
Alignment explanation
Indices: 1365963--1366541 Score: 637
Period size: 197 Copynumber: 2.9 Consensus size: 194
1365953 GTTGACTTAG
* * * * * *
1365963 GCATACGTAGTGCACTCCTAGTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCAGGACCTGCA
1 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGACCAGCA
* ** * * * *
1366028 GCGGGATCGGTAGCACACAGAGGGGACAGGGTCGATCCCCGGCTTGCGCA-TCTTACCTC-TCTG
66 GCAGGATCGACAGCACGCAGGGGGGAC-GGGCCGATCCCTGGCTTGCGCATTC-TACCTCTTC-G
*
1366091 GCCGGCTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCC-CTAGT
128 GCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGA-TTAGGCATACGGAGTTCATCCTC-AGT
1366155 CTAA
191 CTAA
** *
1366159 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTACGATAGCAGGACCAGCA
1 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGACCAGCA
* * *
1366224 GCAGGATCGACAGCACGCAGGGGCGGATCGGCCCGATCCCTGGCTTGCACATTCTGCCTCTTCGG
66 GCAGGATCGACAGCACGCAGGGG-GGA-CGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGG
* * *
1366289 CCTGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGTATTAGGCATACGGAGTTCATCCTCAGTCT
129 CCGGCTGAGCACCCACACGCTCGTTTCATGGGTTG-ATTAGGCATACGGAGTTCATCCTCAGTCT
1366354 AA
193 AA
* * * ** * *
1366356 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGTGGA-AGCAAGTCCAGC
1 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGATAGCAGGACCAGC
* * *
1366420 AACAGGATCGACAGCACGCAGGAGGGGACCGGGCTGAT-CCTCGGCTTGCGCATTCTACCTCTCC
65 AGCAGGATCGACAGCACGCAGG-GGGGA-CGGGCCGATCCCT-GGCTTGCGCATTCTACCTCTTC
** * * ** * *
1366484 GATCGGTTGAGCCCCCGTATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
127 GGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTT-GATTAGGCATACGGAGTTCAT
1366542 TTCATGTCTA
Statistics
Matches: 323, Mismatches: 50, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
196 77 0.24
197 234 0.72
198 12 0.04
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (194 bp):
GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGACCAGCA
GCAGGATCGACAGCACGCAGGGGGGACGGGCCGATCCCTGGCTTGCGCATTCTACCTCTTCGGCC
GGCTGAGCACCCACACGCTCGTTTCATGGGTTGATTAGGCATACGGAGTTCATCCTCAGTCTAA
Found at i:1366366 original size:26 final size:26
Alignment explanation
Indices: 1366330--1366382 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1366320 GTTGTATTAG
1366330 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
1366356 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1366382 G
1 G
1366383 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1368508 original size:26 final size:26
Alignment explanation
Indices: 1368479--1368534 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
1368469 TGGGTTGACT
* * *
1368479 TAAGTATACGGAGTTTATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
1368505 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
1368531 TAAG
1 TAAG
1368535 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:1368886 original size:486 final size:486
Alignment explanation
Indices: 1368237--1369146 Score: 1222
Period size: 486 Copynumber: 1.9 Consensus size: 486
1368227 GACAGCGTGT
** * *
1368237 GGGGGGATCGGGCCAATCCCCTGCTTGCGCATTCTGCCTCATCGGCCGGCTGAGCCCTCGCACAC
1 GGGGGGATCGACCCAATCCCCTGCTTGCGCATTCTGCCTCATCGACCGGCTGAGCCCCCGCACAC
* *
1368302 TCGTTTCATGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTCTAAGCCCCAATCAGACCGAGG
66 TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAATCAGACCGAGG
* * * * *
1368367 GTTGTGGTAGCGAGATCGACAGCATACAGAGGGGGATTGGGCCAGTCCCC-GACTTACGCATTAC
131 GTTATGGTAACGAGATCGACAGCATACAGAGGGGGACTGGGCCAATCCCCAG-CTTACACATTAC
* * *
1368431 GCCTCTCCGGCCTGCTC-GACGCCCGCACGCTCGTTTCATGGGTTGACTTAAGTATACGGAGTTT
195 GCCTCTCCGGCCTGCTCAG-CGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTC
* * ** * ** * *
1368495 ATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATTGGACTGGTAGCAGCACATAGAG
259 ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGACAGCAGCACACAAAG
* * * * *
1368560 GGGGATCAGGTCGATCCTC-GACTTGCGCATGCTGCCTCTCCGATC-GACTGAGTGCCCGTACGC
324 GGGGATCAGGTAGATCCTCAG-CTTGCGCATCCTGCCTCTCCGACCAG-CTGAGTGCCCGCACAC
* * *
1368623 TCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCTGATGGTGAGGCATACCGAGGGTTA
387 TCATTTCATGGGTTCG-CTTAGGCATACAGAGTTCATTCCTGATGGTGAGGCATACCGAGGGTTA
1368687 CGACAATAAGACCAGTAGCAGGATCGATAGCACGTA
451 CGACAATAAGACCAGTAGCAGGATCGATAGCACGTA
* * *
1368723 GGGGGGATCGACCCGATCCCC-GACTTGTGCATTCTGCCTC-TCCGACCGGCTGAGCCCCCGTAC
1 GGGGGGATCGACCCAATCCCCTG-CTTGCGCATTCTGCCTCAT-CGACCGGCTGAGCCCCCGCAC
* * * * **
1368786 GCTCATTTTATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTATGCCCCAGTTGGACCGA
64 ACTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAATCAGACCGA
* * **
1368851 GGGTTATGGTAACGGGATCGATAGCATGTAGAGGGGGACTGGGCCAATCCCCAGCTTACACATTA
129 GGGTTATGGTAACGAGATCGACAGCATACAGAGGGGGACTGGGCCAATCCCCAGCTTACACATTA
* * * * *
1368916 TGCCTCTCTGGCCTGCTCAGCGCCCACATGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTC
194 CGCCTCTCCGGCCTGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTC
*
1368981 ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAAAG
259 ATCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGACAGCAGCACACAAAG
* * *
1369046 GGGGATCGGGTAGATCCTCAGCTTTCGCATCCTGCCTCTCCGACCAGCTGAGTGCCTGCACACTC
324 GGGGATCAGGTAGATCCTCAGCTTGCGCATCCTGCCTCTCCGACCAGCTGAGTGCCCGCACACTC
*
1369111 ATTTCATGGGTTCGCTTAGGGATACAGAGTTCATTC
389 ATTTCATGGGTTCGCTTAGGCATACAGAGTTCATTC
1369147 AATGTCTAAG
Statistics
Matches: 363, Mismatches: 54, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
485 2 0.01
486 356 0.98
487 5 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (486 bp):
GGGGGGATCGACCCAATCCCCTGCTTGCGCATTCTGCCTCATCGACCGGCTGAGCCCCCGCACAC
TCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAATCAGACCGAGG
GTTATGGTAACGAGATCGACAGCATACAGAGGGGGACTGGGCCAATCCCCAGCTTACACATTACG
CCTCTCCGGCCTGCTCAGCGCCCACACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTTCAT
CCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGACAGCAGCACACAAAGGG
GGATCAGGTAGATCCTCAGCTTGCGCATCCTGCCTCTCCGACCAGCTGAGTGCCCGCACACTCAT
TTCATGGGTTCGCTTAGGCATACAGAGTTCATTCCTGATGGTGAGGCATACCGAGGGTTACGACA
ATAAGACCAGTAGCAGGATCGATAGCACGTA
Found at i:1369141 original size:321 final size:318
Alignment explanation
Indices: 1368751--1369466 Score: 916
Period size: 321 Copynumber: 2.2 Consensus size: 318
1368741 CCCGACTTGT
* * * * *
1368751 GCATTCTGCCTCTCCGACCGGCTGAGCCCCCGTACGCTCATTTTATGGGTTGGCTTAGGCATACA
1 GCATCCTGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTTCATGGGTT-GCTTAGGCATACA
* * * * * * * *
1368816 GAGTTCATTCCATGTCTATGCCCCAGTTGGACCGAGGGTTATGGTAACGGGATCGATAGCATGTA
65 GAGTTCATTCAATGTCTAAGCCCCAATCGGACCGAGGGTTATGGTAACGGGACCGACAACATGCA
* * *
1368881 GAG-GGGGACTGGGCCAATCCCCAGCTTACACATTATGCCTCTCTGGCCTGCTCAGCGC-CCACA
130 GAGAGGGG-CCGGGCCAATCCCCAGCTTACACATTACGCCTCTCTGGCCTGCTCAGCACTCCACA
**
1368944 TGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
194 --CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
* * * *
1369009 TCCCAGTCTAAGATCAGACCGACAGCAGCACGCAAAGGGGGATCGGGTAGATCCTCAGCTTTC
257 TCCCAGTCCAAGATCAGACCAACAGCAACACGCAAA-GGGGATCGGGTAGATCCTCAGCTTAC
* ** * *
1369072 GCATCCTGCCTCTCCGACCAGCTGAGTGCCTGCACACTCATTTCATGGGTTCGCTTAGGGATACA
1 GCATCCTGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTTCATGGGTT-GCTTAGGCATACA
* *
1369137 GAGTTCATTCAATGTCTAAGCCCCAATCGGACCGAGGGTTGTGGTAGCGGGACCGACAACATGCA
65 GAGTTCATTCAATGTCTAAGCCCCAATCGGACCGAGGGTTATGGTAACGGGACCGACAACATGCA
* * * * *
1369202 GAGAGGGGCCGGGCCAGTCCTCGGCTTACGCATTACGCCTCTCTGGCCTGCTCAGCACTTGCACA
130 GAGAGGGGCCGGGCCAATCCCCAGCTTACACATTACGCCTCTCTGGCCTGCTCAGCAC-TCCACA
** * *
1369267 CTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCATACAGAGTTCATTC
194 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTC
** * * *
1369332 CCAGTCCAAGATTGGACTAACAGCAACACGCAAAGGGGATCGGGTCGATCCTCGGCTTAC
259 CCAGTCCAAGATCAGACCAACAGCAACACGCAAAGGGGATCGGGTAGATCCTCAGCTTAC
* *
1369392 GCATCCTGCCTCTCCGATCGGCTAAGCACCCGCACGA-TCATTTCATGGGTTGACTTAGGCATAC
1 GCATCCTGCCTCTCCGACCGGCTGAGCACCCGCAC-ACTCATTTCATGGGTTG-CTTAGGCATAC
*
1369456 GGAGTTCATTC
64 AGAGTTCATTC
1369467 TTGATGGTGG
Statistics
Matches: 339, Mismatches: 51, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
319 1 0.00
320 86 0.25
321 244 0.72
322 4 0.01
323 4 0.01
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.25
Consensus pattern (318 bp):
GCATCCTGCCTCTCCGACCGGCTGAGCACCCGCACACTCATTTCATGGGTTGCTTAGGCATACAG
AGTTCATTCAATGTCTAAGCCCCAATCGGACCGAGGGTTATGGTAACGGGACCGACAACATGCAG
AGAGGGGCCGGGCCAATCCCCAGCTTACACATTACGCCTCTCTGGCCTGCTCAGCACTCCACACT
CGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
AGTCCAAGATCAGACCAACAGCAACACGCAAAGGGGATCGGGTAGATCCTCAGCTTAC
Found at i:1371234 original size:45 final size:45
Alignment explanation
Indices: 1371109--1371314 Score: 198
Period size: 45 Copynumber: 4.6 Consensus size: 45
1371099 TCGGGGCTCG
* * * *
1371109 GCATGTGTCGATGGTGGTCGAGGCAATCACCCTCACCATGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * * * *
1371154 GCATGTACCGAGGGTGTTCGATGCAACCGCCCGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * * *
1371199 TCTTGTGCCGATGATGGTCGAGGCAATCACCCGCACCAAGGG-CCG
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACC-AGGGCCCA
* * *
1371244 GCATGTGCCGATGGTGATCGAGGCAACCGCCCTCACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * *
1371289 CCTTATGCCGATGGCGGTCGAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
1371315 GTGCCCGTAC
Statistics
Matches: 126, Mismatches: 33, Indels: 4
0.77 0.20 0.02
Matches are distributed among these distances:
44 4 0.03
45 118 0.94
46 4 0.03
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.17
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
Found at i:1371270 original size:90 final size:90
Alignment explanation
Indices: 1371112--1371314 Score: 271
Period size: 90 Copynumber: 2.3 Consensus size: 90
1371102 GGGCTCGGCA
* * * * *
1371112 TGTGTCGATGGTGGTCGAGGCAATCACCCTCACCATGGCCCAGCATGTACCGAGGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGCCCAGCATGTACCGAGGGTGATCGAGG
* *
1371177 CAACCGCCCGCACCAGGGGCCATCT
66 CAACCGCCCGCACCAGGGCCCACCT
* * * * *
1371202 TGTGCCGATGATGGTCGAGGCAATCACCCGCACCAAGGGCCGGCATGTGCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGCCCAGCATGTACCGAGGGTGATCGAGG
*
1371267 CAACCGCCCTCACCAGGGCCCACCT
66 CAACCGCCCGCACCAGGGCCCACCT
* *
1371292 TATGCCGATGGCGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1371315 GTGCCCGTAC
Statistics
Matches: 97, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
90 97 1.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.17
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAATCACCCGCACCAAGGCCCAGCATGTACCGAGGGTGATCGAGG
CAACCGCCCGCACCAGGGCCCACCT
Found at i:1372352 original size:162 final size:162
Alignment explanation
Indices: 1372071--1372372 Score: 410
Period size: 162 Copynumber: 1.9 Consensus size: 162
1372061 CACTCGTTTC
* * * *
1372071 ATGGGTTGACTTAGGCATACGTAGTGCGCTCCCAATCTAAGATTGAACCGGACCGTGGGTTGTAG
1 ATGGGTTGACTTAGGCATACGAAGTGCACTCCCAATCTAAGATTGAACCGGACCGAGGGTTGGAG
* * * * *
1372136 TAGCAGGACCTACAGCGGGATCGACAGCATGCAGAGGGGATCGGGTCCATCCCCGACTTGTGCAT
66 CAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGGGACCGGGTCCATCCCCGACTTGTGCAT
1372201 CCTGCCTCTCTGGCCGCTCGCACGCTCATTTT
131 CCTGCCTCTCTGGCCGCTCGCACGCTCATTTT
* * * * *
1372233 ATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGA
1 ATGGGTTGACTTAGGCATACGAAGTGCACTCCCAATCTAAGATTGAACCGGACCGAGGGTTG-GA
* * *
1372298 -CAGCAGGA-CAATAGCAGGATCGACAGCACGCAGGGGGCGACCGGGTCGATCCCCGACTTGTGC
65 GCAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGG-GACCGGGTCCATCCCCGACTTGTGC
*
1372361 ATTCTGCCTCTC
129 ATCCTGCCTCTC
1372373 CAGCCGACTA
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
161 24 0.20
162 95 0.79
163 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (162 bp):
ATGGGTTGACTTAGGCATACGAAGTGCACTCCCAATCTAAGATTGAACCGGACCGAGGGTTGGAG
CAGCAGGACCAACAGCAGGATCGACAGCACGCAGAGGGGACCGGGTCCATCCCCGACTTGTGCAT
CCTGCCTCTCTGGCCGCTCGCACGCTCATTTT
Found at i:1372462 original size:170 final size:160
Alignment explanation
Indices: 1372318--1372604 Score: 370
Period size: 159 Copynumber: 1.8 Consensus size: 160
1372308 ATAGCAGGAT
* * * *
1372318 CGACAGCACGCAG-GGGGCGACCGGG-TCGATCCCCGACTTGTGCATTCTGCCTCTCCAGCCGAC
1 CGACAGCACGCAGAGGGG-GACCGGGCT-AATCCCCCACTTGCGCATTATGCCTCTCCAGCCGAC
1372381 T-AAGCCCCCCCACGCTTGTTTCATGGGTT-AGCTTAGGCATACGGAGTTCATT-CCATGTCTAA
64 TCAA-CCCCCCCACGCTTGTTTCATGGGTTGA-CTTAGGCATACGGAGTTCATTCCCA-GTCTAA
* *
1372443 GCCCTAG-CCGAACCGAGGGTTGTGGCAGTGGGAC
126 GCACTAGACCGAACCGAGGGTTGCGGCAGTGGGAC
* * *
1372477 CGACAGCACGCAGAGGGGGACTGGGCTAATCCCCCACTTGCGCATTATGCCTCTCCGGCCTACTC
1 CGACAGCACGCAGAGGGGGACCGGGCTAATCCCCCACTTGCGCATTATGCCTCTCCAGCCGACTC
* * * *
1372542 AACGCCCGCATGCTTGTTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCAGTCTAAGCA
66 AACCCCCCCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
1372605 TATAGAGTTC
Statistics
Matches: 111, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
159 100 0.90
160 11 0.10
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.22
Consensus pattern (160 bp):
CGACAGCACGCAGAGGGGGACCGGGCTAATCCCCCACTTGCGCATTATGCCTCTCCAGCCGACTC
AACCCCCCCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACT
AGACCGAACCGAGGGTTGCGGCAGTGGGAC
Found at i:1372606 original size:26 final size:26
Alignment explanation
Indices: 1372576--1372628 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1372566 GTTGACTTAG
*
1372576 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
1372602 GCATATAGAGTTCATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1372628 G
1 G
1372629 ATTGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1373218 original size:45 final size:45
Alignment explanation
Indices: 1373111--1373286 Score: 138
Period size: 45 Copynumber: 3.9 Consensus size: 45
1373101 GAACCATGAC
* * * * * *
1373111 CCAGCATGTGCCGATGGTGTTCAATGCAACCGCCCTCACCAGGGG
1 CCAGCATGTGACGATGGTGATCGAGGCAATCGCCCGCACCAGGGG
* * * *
1373156 CCATCTTGTGACAATGGTGGTCGAGGCAATCGCCCGCACCAGGGG
1 CCAGCATGTGACGATGGTGATCGAGGCAATCGCCCGCACCAGGGG
** * ** *
1373201 CTGGCATGTGTCGATGGTGATCGAGGCAATCGTTCGCACCAGGGC
1 CCAGCATGTGACGATGGTGATCGAGGCAATCGCCCGCACCAGGGG
* * * * * *
1373246 CCAGCTTGTGCCGACGGCGGTCAAGGCAAGT-GCCCGCACCA
1 CCAGCATGTGACGATGGTGATCGAGGCAA-TCGCCCGCACCA
1373287 AAGGGCAGCC
Statistics
Matches: 101, Mismatches: 29, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
45 100 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
CCAGCATGTGACGATGGTGATCGAGGCAATCGCCCGCACCAGGGG
Found at i:1373884 original size:45 final size:45
Alignment explanation
Indices: 1373694--1373895 Score: 190
Period size: 45 Copynumber: 4.5 Consensus size: 45
1373684 GGGCTCGACA
* * * * * *
1373694 TGTGTCGATGGTGGTCGAGGCAATCGCCCTCACCATGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCATCT
* * **
1373739 TGTGCC-ACTGGTGTTCGATGCAACCGCCTGCACCAGGGCCCATCT
1 TGTGCCGA-TGGTGGTCGAGGCAACCGCCCACACCAGGGCCCATCT
* * * **
1373784 TGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGTCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCATCT
** *
1373829 TGTGCCGATGGTGGTCGAGGCAACCTTCCACACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCATCT
* * **
1373874 TATGCAGATGGAAGTCGAGGCA
1 TGTGCCGATGGTGGTCGAGGCA
1373896 TGTGCCATAC
Statistics
Matches: 131, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
44 1 0.01
45 129 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCATCT
Found at i:1374871 original size:26 final size:26
Alignment explanation
Indices: 1374835--1374887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1374825 GCTGACTTAG
1374835 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1374861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1374887 G
1 G
1374888 ATCAGGCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1375401 original size:26 final size:26
Alignment explanation
Indices: 1375365--1375417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1375355 GTTGACTTAG
* *
1375365 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1375391 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1375417 G
1 G
1375418 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1375434 original size:174 final size:173
Alignment explanation
Indices: 1375141--1375554 Score: 524
Period size: 174 Copynumber: 2.4 Consensus size: 173
1375131 ACACGTTATG
* * *
1375141 CCTCTCCGACTGGCTCAACGCCCGCACACTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCAT
1 CCTCTCCGAC-GGCTAAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * * * *
1375206 TCCTAAACTAAGCATATAGAGTTCATTCCTAGTCTAAGATTGAACCGACAGTGGGATCGGTAGCA
65 TCCCAAACTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGACAGTGGGATCGGTAGCA
* * * * * * *
1375271 GCACACAGAGGGGGATCGATTTGATCCTTATCTTGCACATTCTA
130 ACACACAGAGGGGGACCGAGTCGATCCTCAGCTTGCACATCCTA
* * *
1375315 CCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGA-CGGCTAAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
** * *
1375380 TCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACC-AGCAGTGGGATTGGTAGC
65 TCCCAAACTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGA-CAGTGGGATCGGTAGC
* * *
1375444 AACACGCAGAGGGGGACCGGGTCGATCCTCAGCTTGCGCATCCTA
129 AACACACAGAGGGGGACCGAGTCGATCCTCAGCTTGCACATCCTA
* * * *
1375489 CCTCCCCAGCCGGTTAAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCTCC-GACGGCTAAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
1375554 T
65 T
1375555 TCTGGTCTAA
Statistics
Matches: 206, Mismatches: 31, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
173 1 0.00
174 203 0.99
175 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (173 bp):
CCTCTCCGACGGCTAAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT
CCCAAACTAAGCATACAGAGTTCATTCCCAATCTAAGATCGAACCGACAGTGGGATCGGTAGCAA
CACACAGAGGGGGACCGAGTCGATCCTCAGCTTGCACATCCTA
Found at i:1375973 original size:45 final size:45
Alignment explanation
Indices: 1375917--1376033 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
1375907 TAGCCCAGCA
* * *
1375917 TGTGTCGATGGTGTTCGATGCAACCACATTTGCCAGGTACCATCT
1 TGTGCCGATGGTGTTCGACGCAACCACACTTGCCAGGTACCATCT
* * * * *
1375962 TGTGCTGATGGTGTTCAACGTAACCGCCCTTGCCAGGTACCATCT
1 TGTGCCGATGGTGTTCGACGCAACCACACTTGCCAGGTACCATCT
* *
1376007 TGTGCCGATGGTGGTCGAGGCAACCAC
1 TGTGCCGATGGTGTTCGACGCAACCAC
1376034 CCGCACCAGG
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.19, C:0.26, G:0.27, T:0.27
Consensus pattern (45 bp):
TGTGCCGATGGTGTTCGACGCAACCACACTTGCCAGGTACCATCT
Found at i:1376043 original size:45 final size:45
Alignment explanation
Indices: 1375867--1376067 Score: 129
Period size: 45 Copynumber: 4.5 Consensus size: 45
1375857 AACCGGGGCT
* * *
1375867 CAGCATGTGCCAATGGTGGTCGAAGCAATCACCCGCACCA--TAGCC
1 CAGCTTGTGCCGATGGTGGTCGAAGCAACCACCCGCACCAGGTA--C
* * * * *****
1375912 CAGCATGTGTCGATGGTGTTCGATGCAACCACATTTGCCAGGTAC
1 CAGCTTGTGCCGATGGTGGTCGAAGCAACCACCCGCACCAGGTAC
* * * * * ***
1375957 CATCTTGTGCTGATGGTGTTC-AACGTAACCGCCCTTGCCAGGTAC
1 CAGCTTGTGCCGATGGTGGTCGAA-GCAACCACCCGCACCAGGTAC
* * **
1376002 CATCTTGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCC
1 CAGCTTGTGCCGATGGTGGTCGAAGCAACCACCCGCACCAGGTAC
*
1376047 CAGCTTGTGCCGATGGCGGTC
1 CAGCTTGTGCCGATGGTGGTC
1376068 AAGGTAAGTG
Statistics
Matches: 121, Mismatches: 31, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
44 1 0.01
45 117 0.97
46 1 0.01
47 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (45 bp):
CAGCTTGTGCCGATGGTGGTCGAAGCAACCACCCGCACCAGGTAC
Found at i:1376135 original size:13 final size:13
Alignment explanation
Indices: 1376117--1376141 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1376107 ATGGTCGATG
1376117 CATGTGCCATCAC
1 CATGTGCCATCAC
1376130 CATGTGCCATCA
1 CATGTGCCATCA
1376142 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1377381 original size:26 final size:26
Alignment explanation
Indices: 1377345--1377397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1377335 GTTAACATAG
*
1377345 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1377371 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1377397 G
1 G
1377398 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1377992 original size:45 final size:45
Alignment explanation
Indices: 1377850--1378088 Score: 191
Period size: 45 Copynumber: 5.4 Consensus size: 45
1377840 CGGGGCTCGA
* * * *
1377850 CATGTACCGATGGTGGTCGAGGCAACCGCCCGCATCATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
* * * *
1377895 CATGT---GAT-GTGTTCGATGCAACCGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
* * * *
1377936 CTTGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGTCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
* * * * *
1377981 CATGTGCCGATGGTGATCGACGTAACCGTCCGCACCAAGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
* ** * ** **
1378026 CTTGTGCCGATGACGATCGAGGCAAGTGCCCATACCAAAGGG-CAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGGCCAG
* *
1378071 CCTGTGCCGATGATGGTC
1 CATGTGCCGATGGTGGTC
1378089 AATGCATGTG
Statistics
Matches: 153, Mismatches: 36, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
41 31 0.20
42 3 0.02
44 3 0.02
45 112 0.73
46 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
Found at i:1378112 original size:13 final size:13
Alignment explanation
Indices: 1378094--1378118 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1378084 TGGTCAATGC
1378094 ATGTGCCATCATT
1 ATGTGCCATCATT
1378107 ATGTGCCATCAT
1 ATGTGCCATCAT
1378119 GAGCCATTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (13 bp):
ATGTGCCATCATT
Found at i:1378997 original size:26 final size:26
Alignment explanation
Indices: 1378967--1379019 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1378957 GTTGACTTAG
1378967 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1378993 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1379019 G
1 G
1379020 ATCATATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1379359 original size:26 final size:26
Alignment explanation
Indices: 1379323--1379375 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1379313 GTTAACTTAG
1379323 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1379349 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1379375 G
1 G
1379376 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1381562 original size:159 final size:159
Alignment explanation
Indices: 1381311--1381604 Score: 354
Period size: 159 Copynumber: 1.8 Consensus size: 159
1381301 GGACTGGACT
* * *
1381311 GAGGGTTACGGTAGCAGGATCGGTAGCACGCAGGGGGGGACCGAGCCAATCCCCAGCTTGCACAT
1 GAGGGTTACGGTAGCAGGATCGATAGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACACAT
* * * * * ** * *
1381376 TCTACCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGCTGGCTTTGGCATATGGAGT
66 TATACCTCTCCGACCCGCTCAGCGCCCGCACGCTCATTTCATGGGCTAACTTAGGCATACGGAGT
1381441 TCATTAGATGTCTAAGCCCCAGCTGGATC
131 TCATTAGATGTCTAAGCCCCAGCTGGATC
** * * * ** *
1381470 GAGGGTTGTGGTAGCAGGATCGATAGCATGCAGAGGGGGATCGAGCCGATCCCTGGCTTACGCAT
1 GAGGGTTACGGTAGCAGGATCGATAGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACACAT
* * * * * *
1381535 TATGCCTCTCTGACCCGTTCAGTGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGT
66 TATACCTCTCCGACCCGCTCAGCGCCCGCACGCTCATTTCATGGGCTAACTTAGGCATACGGAGT
1381600 TCATT
131 TCATT
1381605 CCCAATCTAA
Statistics
Matches: 109, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
159 109 1.00
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (159 bp):
GAGGGTTACGGTAGCAGGATCGATAGCACGCAGAGGGGGACCGAGCCAATCCCCAGCTTACACAT
TATACCTCTCCGACCCGCTCAGCGCCCGCACGCTCATTTCATGGGCTAACTTAGGCATACGGAGT
TCATTAGATGTCTAAGCCCCAGCTGGATC
Found at i:1381957 original size:26 final size:26
Alignment explanation
Indices: 1381921--1381973 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1381911 GTTGACTTAG
*
1381921 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1381947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1381973 G
1 G
1381974 ATCGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1382012 original size:332 final size:333
Alignment explanation
Indices: 1381335--1382099 Score: 889
Period size: 332 Copynumber: 2.3 Consensus size: 333
1381325 CAGGATCGGT
* * * * * *
1381335 AGCACGCAGGGGGGGAC-CGAGCCAATCCCCAGCTTGCACATTCTACCTCTCCGGCCGGCTGAGC
1 AGCACGCAGAGGGGGACTAG-GCCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGC
* * * * *
1381399 GCCCGCACGCTCGTTTCATGGGCTGGCTTTGGCATATGGAGTTCATTAGATGTCTAAGCCCCAGC
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTACATGTCTAAGCCCCAGC
* * * * ** *
1381464 TGGATCGAGGGTTGTGGTAGCAGGATCGATAGCATGCAGAGGGGGATCGAGCCGATCCCTGGCTT
130 CGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACACAGAGGGGGATCGAGCCAATCCCTGGCTT
* ** * *
1381529 ACGCATTATGCCTCTCTGACCCGTTCAGTGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCATA
195 ACGCATTATGCCTCTCAGACCCGTTCAGCACCCACACGCTCATTTCGTAGGTTAACTTAGGCATA
* * * *
1381594 CGGAGTTCATTCCCAATCTAAGCATACGGAGATCATTTCTAGTCTAAGATCACTCTGGTAGCGGG
260 CGGAGTTCATTCCCAATCTAAGCATACGGAGATCATTCCCAGTCTAAGATCACTCGGGCAGCGGG
* *
1381659 ATCGGTAGC
325 ATCGGCACC
** *
1381668 AGCACGCAGAGGGGGA-TCAGGCCGATCCTTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
1 AGCACGCAGAGGGGGACT-AGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGC
* * *
1381732 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTATGCCCTAGC
65 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTACATGTCTAAGCCCCAGC
* * * * *
1381797 CGGACCGAGGGTTGTGGTAGCGGGACCGACAGCACATAGTGGGGGATCGGGTCAATCCTCT-GCT
130 CGGACCGAGGGTTGTGGTAGCAGGACCGACAGCACACAGAGGGGGATCGAGCCAATCC-CTGGCT
* * ** *
1381861 TGCGTATTATGCC-CTCCAG-CTGGCTT-AGCACCCACACGCTCATTTCGTAGGTTGACTTAGGC
194 TACGCATTATGCCTCT-CAGACCCG-TTCAGCACCCACACGCTCATTTCGTAGGTTAACTTAGGC
* * *
1381923 ATACGGAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-T-GGGCA
257 ATACGGAGTTCATTCCCAATCTAAGCATACGGAGATCATTCCCAGTCTAAGATC--ACTCGGGCA
*
1381986 GCGGGATTGGCACC
320 GCGGGATCGGCACC
* * * * * * *
1382000 AGCACGCAGAGGGGGACTAGGTCGATCCTCAGCTTACGCATCCTACCTCTCTGATCGACTGAGTG
1 AGCACGCAGAGGGGGACTAGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
* *
1382065 CCCGCTCGCTCGTTTCGTGGGTTGACTTAGGCATA
66 CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATA
1382100 CGAAGTTTAT
Statistics
Matches: 363, Mismatches: 61, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
332 184 0.51
333 175 0.48
334 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.24
Consensus pattern (333 bp):
AGCACGCAGAGGGGGACTAGGCCGATCCTCAGCTTGCGCATTCTACCTCTCCGGTCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATAAGGAGTTCATTACATGTCTAAGCCCCAGCC
GGACCGAGGGTTGTGGTAGCAGGACCGACAGCACACAGAGGGGGATCGAGCCAATCCCTGGCTTA
CGCATTATGCCTCTCAGACCCGTTCAGCACCCACACGCTCATTTCGTAGGTTAACTTAGGCATAC
GGAGTTCATTCCCAATCTAAGCATACGGAGATCATTCCCAGTCTAAGATCACTCGGGCAGCGGGA
TCGGCACC
Found at i:1382499 original size:45 final size:45
Alignment explanation
Indices: 1382435--1382539 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
1382425 GCATGTACCA
* * *
1382435 ATGGTGGTCGAGGCAACCGCCCGTACCATGGCCCAGCATATGCCG
1 ATGGTGGTCGATGCAACCGCCCGCACCACGGCCCAGCATATGCCG
* * * * *
1382480 ATGGTGTTCGATGTAACCGCCTGCACCACGGCCCAGTATGTGCCG
1 ATGGTGGTCGATGCAACCGCCCGCACCACGGCCCAGCATATGCCG
*
1382525 ATGATGGTCGATGCA
1 ATGGTGGTCGATGCA
1382540 TGTGCCATCA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (45 bp):
ATGGTGGTCGATGCAACCGCCCGCACCACGGCCCAGCATATGCCG
Found at i:1383461 original size:26 final size:26
Alignment explanation
Indices: 1383431--1383483 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1383421 GTTGACTTAG
1383431 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
1383457 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1383483 G
1 G
1383484 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1383826 original size:26 final size:26
Alignment explanation
Indices: 1383786--1383838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1383776 GTTAACTTAG
*
1383786 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGATCATTCCTAGTCTAA
*
1383812 GCATACGGAGATCATTTCTAGTCTAA
1 GCATACGGAGATCATTCCTAGTCTAA
1383838 G
1 G
1383839 ATCACTCTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGATCATTCCTAGTCTAA
Found at i:1388912 original size:45 final size:45
Alignment explanation
Indices: 1388863--1388987 Score: 119
Period size: 45 Copynumber: 2.8 Consensus size: 45
1388853 GGCTACCCTT
* *
1388863 TGGTACGGGCACTTACCTTGACCACCATC-GACACAAGCTAGG-ACC
1 TGGTACGGGCACTTACCTCGACCACCATCAG-CACAAGAT-GGCACC
** * *
1388908 TGGTACGGGCGGTTGCCTCGACCACCATCAGCACAAGATGGCCCC
1 TGGTACGGGCACTTACCTCGACCACCATCAGCACAAGATGGCACC
** * * *
1388953 TGGTACGGGCGGTTGCATCGAACACCATCAGCACA
1 TGGTACGGGCACTTACCTCGACCACCATCAGCACA
1388988 TGCTAGGCCA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
44 2 0.03
45 67 0.96
46 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.26, T:0.17
Consensus pattern (45 bp):
TGGTACGGGCACTTACCTCGACCACCATCAGCACAAGATGGCACC
Found at i:1389033 original size:45 final size:45
Alignment explanation
Indices: 1388883--1389032 Score: 155
Period size: 45 Copynumber: 3.3 Consensus size: 45
1388873 ACTTACCTTG
* *
1388883 ACCACCATC-GACACAAGCTAGGACCTGGTACGGGCGGTTGCCTCG
1 ACCACCATCAG-CACAAGCTAGGACCTGGTACGGGCGGTTGCATCA
* *
1388928 ACCACCATCAGCACAAGAT-GGCCCCTGGTACGGGCGGTTGCATCGA
1 ACCACCATCAGCACAAGCTAGG-ACCTGGTACGGGCGGTTGCATC-A
* * * *
1388974 A-CACCATCAGCACATGCTAGG-CCATGGTGCGGACGGTTGCTTCA
1 ACCACCATCAGCACAAGCTAGGACC-TGGTACGGGCGGTTGCATCA
*
1389018 ACCATCATCAGCACA
1 ACCACCATCAGCACA
1389033 TACCGAGCCT
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
44 6 0.07
45 79 0.89
46 4 0.04
ACGTcount: A:0.25, C:0.33, G:0.26, T:0.17
Consensus pattern (45 bp):
ACCACCATCAGCACAAGCTAGGACCTGGTACGGGCGGTTGCATCA
Found at i:1390478 original size:45 final size:45
Alignment explanation
Indices: 1390370--1390496 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 45
1390360 GGCCCTGCAT
* * *
1390370 GCGGTTACGTCGATCACCGTCGGCACATGCCGGCCCTTGGTGCGG
1 GCGGTTACGTCGACCACCATCGGCACATGCCGGCCCGTGGTGCGG
** * * * *
1390415 GCAATTACCTCAAGCACCATCGGCACATGCTGGCCCGTGGTGCGG
1 GCGGTTACGTCGACCACCATCGGCACATGCCGGCCCGTGGTGCGG
* * *
1390460 GCGGTTGCGTCGACCACCATCGACACATTCCGAGCCC
1 GCGGTTACGTCGACCACCATCGGCACATGCCG-GCCC
1390497 CGATCGACCC
Statistics
Matches: 64, Mismatches: 17, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
45 60 0.94
46 4 0.06
ACGTcount: A:0.17, C:0.35, G:0.30, T:0.18
Consensus pattern (45 bp):
GCGGTTACGTCGACCACCATCGGCACATGCCGGCCCGTGGTGCGG
Found at i:1391490 original size:195 final size:196
Alignment explanation
Indices: 1391128--1391491 Score: 441
Period size: 195 Copynumber: 1.9 Consensus size: 196
1391118 GACATGGAAC
** ** * * *
1391128 AAACTCCATATGCCTAAGCCAACCAATGAAATGAGCGTGCGGGAGCTCAGCCTACCGGAGAGGCA
1 AAACTCCATATGCCTAAGCCAACCAACAAAACAAGCGTCCGGGAGCTCAGCCGACCAGAGAGGCA
* * * * *
1391193 AAATGCGCAAGCCGGGGATTGGCCCGGTCCCCCTTACATGCTGTCGATCCTGCTACTGGTCCTGC
66 AAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACATGCTGTCGATCCCGCTACTGGTCCTGC
* *
1391258 TATCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGATTCAACTCCGTATGCTTAGACTGGGGA
131 TACCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGATTCAACTCCGTATGCTTAGACTGGGGA
1391323 T
196 T
* * * * *
1391324 AAACTCCATATGCCTAAGTCAACCCACAAAACAAGCGTCCGGGCGCTTAGCCGGCCAGAGAGGCA
1 AAACTCCATATGCCTAAGCCAACCAACAAAACAAGCGTCCGGGAGCTCAGCCGACCAGAGAGGCA
* * * *
1391389 GAATGCGCAAG-CGAGGATCGACTCGAT-CCCCTCTGCATGCTGTCGATCCCGCT-GTGGGTCCT
66 AAATGCGCAAGCCGAGGATCGACCCGATCCCCCT-TACATGCTGTCGATCCCGCTACT-GGTCCT
*
1391451 GCTACCACAACCC-CTGAT-TCGGTCTGATCTTAGACTAGGAT
129 GCTACCACAACCCTC-GGTCT-GGTCTGATCTTAGACTAGGAT
1391492 CACAGTACGT
Statistics
Matches: 140, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
194 8 0.06
195 69 0.49
196 63 0.45
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (196 bp):
AAACTCCATATGCCTAAGCCAACCAACAAAACAAGCGTCCGGGAGCTCAGCCGACCAGAGAGGCA
AAATGCGCAAGCCGAGGATCGACCCGATCCCCCTTACATGCTGTCGATCCCGCTACTGGTCCTGC
TACCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGATTCAACTCCGTATGCTTAGACTGGGGA
T
Found at i:1392337 original size:45 final size:44
Alignment explanation
Indices: 1392288--1392471 Score: 127
Period size: 45 Copynumber: 4.1 Consensus size: 44
1392278 ACCTCGACCT
**
1392288 CCATCGACACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCAATCA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCAGTTGCCTCAA-CA
* * * * * * * *
1392333 CCATCGACACATGC-CGGCCATTGGTGTGGGCAATTTCTTCGACCA
1 CCATCGACACAAGCTGGGCC-CTGGTGCGGGCAGTTGCCTC-AACA
* * * * * *
1392378 CCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCAGTTGCCTC-AACA
* * * * *
1392423 CCATCGACACATGCTGGGCCGTGGTACGGGTAGTTGCCTCGAAAA
1 CCATCGACACAAGCTGGGCCCTGGTGCGGGCAGTTGCCTC-AACA
1392468 CCAT
1 CCAT
1392472 TAGCACATAC
Statistics
Matches: 103, Mismatches: 33, Indels: 6
0.73 0.23 0.04
Matches are distributed among these distances:
44 4 0.04
45 95 0.92
46 4 0.04
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (44 bp):
CCATCGACACAAGCTGGGCCCTGGTGCGGGCAGTTGCCTCAACA
Found at i:1392357 original size:90 final size:90
Alignment explanation
Indices: 1392263--1392436 Score: 224
Period size: 90 Copynumber: 1.9 Consensus size: 90
1392253 AGGCTGCCCT
* * * * * * *
1392263 TTGGTACGGGCACTTACCTCGACCTCCATCGACACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTC
1 TTGGTACGGGCAATTACCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATC
1392328 -AATCACCATCGACACATGCCGGCCA
66 GAA-CACCATCGACACATGCCGGCCA
** * * *
1392353 TTGGTGTGGGCAATTTCTTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTACATC
1 TTGGTACGGGCAATTACCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATC
1392418 GAACACCATCGACACATGC
66 GAACACCATCGACACATGC
1392437 TGGGCCGTGG
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 69 0.97
91 2 0.03
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (90 bp):
TTGGTACGGGCAATTACCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATC
GAACACCATCGACACATGCCGGCCA
Found at i:1392471 original size:90 final size:90
Alignment explanation
Indices: 1392264--1392471 Score: 195
Period size: 90 Copynumber: 2.3 Consensus size: 90
1392254 GGCTGCCCTT
* * *** * * * * *
1392264 TGGTACGGGCACTTACCTCGACCTCCATCGACACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCA
1 TGGTACGGGCAATTGCCTCGAAAACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATCA
*
1392329 ATCACCATCGACACATGCCGGCCAT
66 ATCACCATCGACACATGCCGGCCAG
** * * ** *
1392354 TGGTGTGGGCAATTTCTTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTACATCG
1 TGGTACGGGCAATTGCCTCGAAAACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATC-
*
1392419 AA-CACCATCGACACATGCTGGGCC-G
65 AATCACCATCGACACATGC-CGGCCAG
* *
1392444 TGGTACGGGTAGTTGCCTCGAAAACCAT
1 TGGTACGGGCAATTGCCTCGAAAACCAT
1392472 TAGCACATAC
Statistics
Matches: 94, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
90 88 0.94
91 6 0.06
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (90 bp):
TGGTACGGGCAATTGCCTCGAAAACCATCGACACAAGATGGCCCCTGGTGCGGGCGGTTACATCA
ATCACCATCGACACATGCCGGCCAG
Found at i:1393164 original size:25 final size:26
Alignment explanation
Indices: 1393115--1393166 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
1393105 CCGGTCCGAT
*
1393115 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
1393141 CTTAGATTGGG-ATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
1393166 C
1 C
1393167 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:1394158 original size:45 final size:45
Alignment explanation
Indices: 1394109--1394217 Score: 191
Period size: 45 Copynumber: 2.4 Consensus size: 45
1394099 GTATGGGCAC
* *
1394109 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
*
1394154 TTGCCTCGACCACCATCAGCACAAGATGGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
1394199 TTGCCTCGACCACCATCGG
1 TTGCCTCGACCACCATCGG
1394218 TACATACCGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.15, C:0.36, G:0.33, T:0.17
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
Found at i:1394783 original size:24 final size:24
Alignment explanation
Indices: 1394756--1394835 Score: 124
Period size: 24 Copynumber: 3.3 Consensus size: 24
1394746 TGAGTGCTAT
*
1394756 CGAACCCGTTGCGGGTCCTGCTGC
1 CGAACCCGTTACGGGTCCTGCTGC
*
1394780 CGAACCCGTTACGGGTCCTGCTGT
1 CGAACCCGTTACGGGTCCTGCTGC
*
1394804 CGAACCCGTTACGGGTCCTACTGC
1 CGAACCCGTTACGGGTCCTGCTGC
1394828 CGCAACCC
1 CG-AACCC
1394836 TTGGTCCAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 46 0.90
25 5 0.10
ACGTcount: A:0.14, C:0.39, G:0.28, T:0.20
Consensus pattern (24 bp):
CGAACCCGTTACGGGTCCTGCTGC
Found at i:1395663 original size:45 final size:44
Alignment explanation
Indices: 1395614--1395801 Score: 153
Period size: 45 Copynumber: 4.2 Consensus size: 44
1395604 TCGATTGCCG
* * *
1395614 TCGGCATAAGCTAGGCCTTGGTGCCGGCGGTTGCCTTGATCACCA
1 TCGGCACAAGCT-GGCCTTGGTGTCGGCGGTTGCCTTGACCACCA
* * * * * ** *
1395659 TCGGCACATGCTGACCCTTGGTGTGGGTGATTGCCTCAACCACCG
1 TCGGCACAAGCTG-GCCTTGGTGTCGGCGGTTGCCTTGACCACCA
* * * * *
1395704 TCGGCATAAGATGGCCCTTGGTGTAGGCGGTTGCATTGAACACCA
1 TCGGCACAAGCTGG-CCTTGGTGTCGGCGGTTGCCTTGACCACCA
* *
1395749 TCGGCACATGCTAGGCCGTGGTG-CGAGCGGTTGCCTTGACCACCA
1 TCGGCACAAGCT-GGCCTTGGTGTCG-GCGGTTGCCTTGACCACCA
*
1395794 TCGACACA
1 TCGGCACA
1395802 TGCCGAGCCT
Statistics
Matches: 108, Mismatches: 31, Indels: 8
0.73 0.21 0.05
Matches are distributed among these distances:
44 2 0.02
45 104 0.96
46 2 0.02
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (44 bp):
TCGGCACAAGCTGGCCTTGGTGTCGGCGGTTGCCTTGACCACCA
Found at i:1395680 original size:90 final size:90
Alignment explanation
Indices: 1395567--1395761 Score: 216
Period size: 90 Copynumber: 2.2 Consensus size: 90
1395557 CATCGACCAT
* * *** *
1395567 CATCGGCACAGGCTACCCTTTGGT-ACGGCCACTTGCCTCGATTGCCGTCGGCATAAGCTAGG-C
1 CATCGGCACATGCTACCCTTTGGTGACGGCCA-TTGCCTCAACCACCGTCGGCATAAGAT-GGCC
* * *
1395630 CTTGGTGCCGGCGGTTGCCTTGATCAC
64 CTTGGTGCAGGCGGTTGCATTGAACAC
** **
1395657 CATCGGCACATGCTGACCC-TTGGTGTGGGTGATTGCCTCAACCACCGTCGGCATAAGATGGCCC
1 CATCGGCACATGCT-ACCCTTTGGTGACGGCCATTGCCTCAACCACCGTCGGCATAAGATGGCCC
*
1395721 TTGGTGTAGGCGGTTGCATTGAACAC
65 TTGGTGCAGGCGGTTGCATTGAACAC
1395747 CATCGGCACATGCTA
1 CATCGGCACATGCTA
1395762 GGCCGTGGTG
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
89 3 0.03
90 78 0.89
91 7 0.08
ACGTcount: A:0.17, C:0.30, G:0.29, T:0.24
Consensus pattern (90 bp):
CATCGGCACATGCTACCCTTTGGTGACGGCCATTGCCTCAACCACCGTCGGCATAAGATGGCCCT
TGGTGCAGGCGGTTGCATTGAACAC
Found at i:1395792 original size:90 final size:90
Alignment explanation
Indices: 1395611--1395784 Score: 217
Period size: 90 Copynumber: 1.9 Consensus size: 90
1395601 GCCTCGATTG
* * * *
1395611 CCGTCGGCATAAGCTAGGCCTTGGTGCCGGCGGTTGCCTTGATCACCATCGGCACATGCTGACCC
1 CCGTCGGCATAAGATAGGCCTTGGTGCAGGCGGTTGCATTGAACACCATCGGCACATGCTGACCC
* * * *
1395676 TTGGTGTGGGTGATTGCCTCAACCA
66 GTGGTGCGAGCGATTGCCTCAACCA
* *
1395701 CCGTCGGCATAAGAT-GGCCCTTGGTGTAGGCGGTTGCATTGAACACCATCGGCACATGCT-AGG
1 CCGTCGGCATAAGATAGG-CCTTGGTGCAGGCGGTTGCATTGAACACCATCGGCACATGCTGA-C
*
1395764 CCGTGGTGCGAGCGGTTGCCT
64 CCGTGGTGCGAGCGATTGCCT
1395785 TGACCACCAT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
89 3 0.04
90 68 0.96
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (90 bp):
CCGTCGGCATAAGATAGGCCTTGGTGCAGGCGGTTGCATTGAACACCATCGGCACATGCTGACCC
GTGGTGCGAGCGATTGCCTCAACCA
Found at i:1396115 original size:26 final size:26
Alignment explanation
Indices: 1396086--1396138 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1396076 TCGATCTGAT
1396086 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
1396112 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
1396138 C
1 C
1396139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Done.