Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 13 of 120
Found at i:1397391 original size:45 final size:44
Alignment explanation
Indices: 1397341--1397554 Score: 166
Period size: 45 Copynumber: 4.8 Consensus size: 44
1397331 GGCTACCTTT
1397341 TGGTACGGGCACTTGCCTCGA-CAGCCATCGGCACAAGCTGGGCCCC
1 TGGTACGGGCA-TTGCCTCGACCA-CCATCGGCACAAGCT-GGCCCC
* * * *
1397387 -GGTACGGGCGGTTGCCTCGATCACCATCAGCACATGCT-GCCCC
1 TGGTACGGGC-ATTGCCTCGACCACCATCGGCACAAGCTGGCCCC
* *
1397430 TTGGTACGGGCGATTACCTCGACCACCATCGGCACAAGATGGCCCC
1 -TGGTACGGGC-ATTGCCTCGACCACCATCGGCACAAGCTGGCCCC
* * * * * * * * *
1397476 TGGT-CAGGCGGTTGCATTGAACACCATCAGCACATGCTGGGCCG
1 TGGTACGGGC-ATTGCCTCGACCACCATCGGCACAAGCTGGCCCC
* * *
1397520 TGGTGCGAGCAGTTGCCTCGACCACCATCGACACA
1 TGGTACGGGCA-TTGCCTCGACCACCATCGGCACA
1397555 TGTCGAGCCC
Statistics
Matches: 133, Mismatches: 28, Indels: 15
0.76 0.16 0.09
Matches are distributed among these distances:
43 5 0.04
44 33 0.25
45 88 0.66
46 7 0.05
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.18
Consensus pattern (44 bp):
TGGTACGGGCATTGCCTCGACCACCATCGGCACAAGCTGGCCCC
Found at i:1397512 original size:89 final size:90
Alignment explanation
Indices: 1397340--1397554 Score: 258
Period size: 89 Copynumber: 2.4 Consensus size: 90
1397330 AGGCTACCTT
* * *
1397340 TTGGTACGGGCACTTGCCTCGA-CAGCCATCGGCACAAGCTGGGCCCCGGTACGGGCGGTTGCCT
1 TTGGTACGGGCACTTGCCTCGACCA-CCATCGGCACAAGATGGGCCCCGGTACAGGCGGTTGCAT
*
1397404 CGATCACCATCAGCACATGCTGCCCC
65 CGAACACCATCAGCACATGCTGCCCC
*
1397430 TTGGTACGGGCGA-TTACCTCGACCACCATCGGCACAAGAT-GGCCCCTGGT-CAGGCGGTTGCA
1 TTGGTACGGGC-ACTTGCCTCGACCACCATCGGCACAAGATGGGCCCC-GGTACAGGCGGTTGCA
* **
1397492 TTGAACACCATCAGCACATGCTGGGCC
64 TCGAACACCATCAGCACATGCTGCCCC
* * * * *
1397519 GTGGTGCGAGCAGTTGCCTCGACCACCATCGACACA
1 TTGGTACGGGCACTTGCCTCGACCACCATCGGCACA
1397555 TGTCGAGCCC
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
88 1 0.01
89 68 0.63
90 36 0.33
91 3 0.03
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (90 bp):
TTGGTACGGGCACTTGCCTCGACCACCATCGGCACAAGATGGGCCCCGGTACAGGCGGTTGCATC
GAACACCATCAGCACATGCTGCCCC
Found at i:1398034 original size:26 final size:26
Alignment explanation
Indices: 1397996--1398048 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1397986 TAGCTTTGAT
*
1397996 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
1398022 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
1398048 C
1 C
1398049 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:1398686 original size:26 final size:26
Alignment explanation
Indices: 1398645--1398697 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1398635 CCGATCCGAT
1398645 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1398671 CTTAGACTGGTG-ATGAACTCCATATG
1 CTTAGACTGG-GAATGAACTCCATATG
1398697 C
1 C
1398698 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1398826 original size:196 final size:195
Alignment explanation
Indices: 1398488--1398850 Score: 449
Period size: 196 Copynumber: 1.9 Consensus size: 195
1398478 TAAACATGGA
* * * **
1398488 ATGAACTCCGTATGCCTAAGCCAACCACAAAACGAGCATACGGGCGCTCAGCCGGCTAGACCGAT
1 ATGAACTCCATATGCCTAAGCCAACCACAAAACGAGCATACGGGCACTCAGCCGGCCAGAAAGAT
* * * ** *
1398553 AGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTACGTGCTGCCAATCCTGCTGCTGGTCCTA
66 AGAACGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCCACTGCGGGTCCTA
* *
1398618 TTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGTG
131 CTGCCACAACCCTCGATCCGATCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGTG
* ** *
1398683 ATGAACTCCATATGCCTAAGTCAACC-CATGAAACGAGTGTGCGGGCACTCAGCCGGCCAGAAAG
1 ATGAACTCCATATGCCTAAGCCAACCACA--AAACGAGCATACGGGCACTCAGCCGGCCAGAAAG
* * * * * * *
1398747 GTAGGACGCACAAGCCGGGGATCGACCCGCTCCCCTCTGCGTGTTGTCAATCCCACTGCGGGTCC
64 ATAGAACGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCCACTGCGGGTCC
* * * *
1398812 TGCTGCCGCAACCCTTGGTCCGATCCGATCATAGACTGG
129 TACTGCCACAACCCTCGATCCGATCCGATCATAGACTGG
1398851 TAGCACACTA
Statistics
Matches: 138, Mismatches: 28, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
194 2 0.01
195 24 0.17
196 112 0.81
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (195 bp):
ATGAACTCCATATGCCTAAGCCAACCACAAAACGAGCATACGGGCACTCAGCCGGCCAGAAAGAT
AGAACGCACAAGCCGGGGATCGACCCGATCCCCCCTACGTGCTGCCAATCCCACTGCGGGTCCTA
CTGCCACAACCCTCGATCCGATCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTGGTG
Found at i:1399307 original size:13 final size:13
Alignment explanation
Indices: 1399289--1399313 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1399279 CAATGGCACA
1399289 TGATGGCACATGG
1 TGATGGCACATGG
1399302 TGATGGCACATG
1 TGATGGCACATG
1399314 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:1399408 original size:45 final size:45
Alignment explanation
Indices: 1399356--1399513 Score: 192
Period size: 45 Copynumber: 3.5 Consensus size: 45
1399346 GTATGGTCAC
*
1399356 TTGCCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGCAGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGA
* * *
1399401 TTACCTCGACCACCATCGGCACAAGCTGGCCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGA
* * * * * * *
1399446 TTGCATCAAACTCCATCGACACAAGCTGGGCCGTAGTGC-GGCCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGG-CGA
*
1399491 TTGCCTCGACCACCATTGGCACA
1 TTGCCTCGACCACCATCGGCACA
1399514 TGCCGAGCCC
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
44 2 0.02
45 90 0.98
ACGTcount: A:0.20, C:0.35, G:0.27, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGA
Found at i:1400007 original size:26 final size:26
Alignment explanation
Indices: 1399956--1400008 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1399946 TCGGTTCGAT
* *
1399956 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1399982 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1400008 C
1 C
1400009 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1400745 original size:26 final size:26
Alignment explanation
Indices: 1400709--1400759 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1400699 TCGATCCATC
* *
1400709 TTAGGCTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
1400735 TTAGACTGGGAATGACCTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
1400760 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:1401104 original size:26 final size:26
Alignment explanation
Indices: 1401063--1401139 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
1401053 TCAGTCCAAT
* *
1401063 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
1401089 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
1401115 CTTAGACTGGGGCTGAACTCCGTAT
1 CTTAGACTGGGGATGAACTCCGTAT
1401140 TCCTAAGTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:1402131 original size:45 final size:44
Alignment explanation
Indices: 1402082--1402211 Score: 136
Period size: 45 Copynumber: 2.9 Consensus size: 44
1402072 GTACGGACAC
*
1402082 TTGCCTCGACCACCATAGGCACAAGTTGGGCCCTGGTGCGACTGG
1 TTGCCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGCGAC-GG
* * *
1402127 TTGCCTCGACAACCATCGGCACAAGAT-GGCTCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGTTGGGC-CCTGGTGC-GACGG
* * * * * *
1402172 TTGCATTGAACACCATCGGTACATGTTGGGCCATGGTGCG
1 TTGCCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGCG
1402212 GGCAGTTGCC
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
44 4 0.06
45 61 0.87
46 5 0.07
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGTTGGGCCCTGGTGCGACGG
Found at i:1402731 original size:26 final size:26
Alignment explanation
Indices: 1402693--1402742 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1402683 CATGTCTGAT
* *
1402693 CTTAGACTGAGAATGAACTCCGTAGG
1 CTTAGACTAAGAATGAACACCGTAGG
1402719 CTTAGACTAAGAATGAACACCGTA
1 CTTAGACTAAGAATGAACACCGTA
1402743 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACACCGTAGG
Found at i:1403200 original size:26 final size:26
Alignment explanation
Indices: 1403171--1403223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1403161 CCGGTCCGAT
*
1403171 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1403197 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1403223 C
1 C
1403224 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1404217 original size:45 final size:45
Alignment explanation
Indices: 1404168--1404369 Score: 167
Period size: 45 Copynumber: 4.5 Consensus size: 45
1404158 TACGGGCACC
* * *
1404168 TGCCTCGACTACCATCGGCACAAGCTGGGCCCTGGTGCGACCGAT
1 TGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGAGCGAT
* * * * * * *
1404213 TGCCTCAATCACTATTGACACATG-TCGGCCCTTGGTGCGAGCAAT
1 TGCCTCGACCACCATCGACACAAGCTGGGCCC-TGGTGCGAGCGAT
* * * * * *
1404258 TGCCTTGACCACCATC-AGTACAAGATGGCCCCTGGTGCGGGCGGT
1 TGCCTCGACCACCATCGA-CACAAGCTGGGCCCTGGTGCGAGCGAT
* * * * *
1404303 TGCATCGAACACCATCGACACATGCTGGGCCGTGGTGC-AGGCGGT
1 TGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGA-GCGAT
1404348 TGCCTCGACCACCATCGACACA
1 TGCCTCGACCACCATCGACACA
1404370 TGTCGAGCCC
Statistics
Matches: 119, Mismatches: 33, Indels: 10
0.73 0.20 0.06
Matches are distributed among these distances:
44 7 0.06
45 106 0.89
46 6 0.05
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (45 bp):
TGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGAGCGAT
Found at i:1404863 original size:26 final size:26
Alignment explanation
Indices: 1404811--1404863 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1404801 TCGGTCCGAT
* *
1404811 CTTAGACTAGGAATAAAGTCCATATG
1 CTTAGACTAGGAATAAACTCCACATG
* *
1404837 CTTAGACTGGGAATAAACTCCGCATG
1 CTTAGACTAGGAATAAACTCCACATG
1404863 C
1 C
1404864 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCACATG
Found at i:1406111 original size:23 final size:23
Alignment explanation
Indices: 1406080--1406135 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
1406070 TCGACCATCA
* *
1406080 ATGGCACATGATGGTGCATGGTG
1 ATGGCACATGATGGCGCAAGGTG
*
1406103 ATGGTACATGATGGCGCAAGGTG
1 ATGGCACATGATGGCGCAAGGTG
1406126 ATGGCACATG
1 ATGGCACATG
1406136 CATCGACCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.25, C:0.14, G:0.38, T:0.23
Consensus pattern (23 bp):
ATGGCACATGATGGCGCAAGGTG
Found at i:1410161 original size:106 final size:106
Alignment explanation
Indices: 1409974--1410181 Score: 362
Period size: 106 Copynumber: 2.0 Consensus size: 106
1409964 TGATGAAGCT
*
1409974 AGCATCAACTAACTCTTTGAACTACTTCCTCAACTCCTCTAACTCTGGTGGAGACATTCGGTAAA
1 AGCATCAACTAACTCTTTGAACTACTTCCTCAACTCCTCCAACTCTGGTGGAGACATTCGGTAAA
1410039 GGGCTCTGGCTAGTGGCTTGGCCTCGGACACCAACTTAGCC
66 GGGCTCTGGCTAGTGGCTTGGCCTCGGACACCAACTTAGCC
* * * *
1410080 AGCATCAACTAACTCTTTGAGCTGCTTCCTCAACTCTTCCAACTCTGGTGGAGACATTCGGTAAG
1 AGCATCAACTAACTCTTTGAACTACTTCCTCAACTCCTCCAACTCTGGTGGAGACATTCGGTAAA
*
1410145 GGGCTCTGGCTGGTGGCTTGGCCTCGGACACCAACTT
66 GGGCTCTGGCTAGTGGCTTGGCCTCGGACACCAACTT
1410182 TGCCCGTGCC
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
106 96 1.00
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.27
Consensus pattern (106 bp):
AGCATCAACTAACTCTTTGAACTACTTCCTCAACTCCTCCAACTCTGGTGGAGACATTCGGTAAA
GGGCTCTGGCTAGTGGCTTGGCCTCGGACACCAACTTAGCC
Found at i:1412024 original size:26 final size:26
Alignment explanation
Indices: 1411995--1412046 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
1411985 TGATTCGATT
1411995 TTAGACTAGGAATGAACT-TCGTATGC
1 TTAGACTAGGAATGAACTCT-GTATGC
* * *
1412021 TTAGTCTGGGGATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCTGTATGC
1412047 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCTGTATGC
Found at i:1413033 original size:45 final size:45
Alignment explanation
Indices: 1412979--1413112 Score: 164
Period size: 45 Copynumber: 3.0 Consensus size: 45
1412969 TTTTGGTATG
* *
1412979 GGCACTTGCCTCGACCGCCATCGGCACAAGCTAGGCCCTGGTGCA-
1 GGCAATTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCAC
* * * *
1413024 GGCAGTTGCCTCGATCACCATCGGCACATGCTGGCCCTTG-GCAC
1 GGCAATTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGCAC
*
1413068 TGGCAATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGC
1 -GGCAATTGCCTCGACCACCATCGGCACAAGCTGG-CCCTGGTGC
1413113 GAGCGGTTGC
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 3 0.04
44 7 0.09
45 58 0.77
46 5 0.07
47 2 0.03
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.18
Consensus pattern (45 bp):
GGCAATTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGCAC
Found at i:1413049 original size:90 final size:90
Alignment explanation
Indices: 1412940--1413141 Score: 223
Period size: 90 Copynumber: 2.2 Consensus size: 90
1412930 TGATGGCACC
* * * * * *
1412940 TGCATCGACCATCATCGGCACAGGCT-ACCTTTTGGTA-TGGGCACTTGCCTCGACCGCCATCGG
1 TGCATCGAACACCATCGGCACAGGCTGACC-CTTGGCACT-GGCAATTGCCTCGACCACCATCGG
*
1413003 CACAAGCTAGG-CCCTGGTGC-AGGCAGT
64 CACAAGAT-GGCCCCTGGTGCGA-GCAGT
* * * *
1413030 TGCCTCGATCACCATCGGCACATGCTGGCCCTTGGCACTGGCAATTGCCTCGACCACCATCGGCA
1 TGCATCGAACACCATCGGCACAGGCTGACCCTTGGCACTGGCAATTGCCTCGACCACCATCGGCA
*
1413095 CAAGATGGCCCCTGGTGCGAGCGGT
66 CAAGATGGCCCCTGGTGCGAGCAGT
*
1413120 TGCATCGAACACCGTCGGCACA
1 TGCATCGAACACCATCGGCACA
1413142 TGTTGGGCCG
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
89 2 0.02
90 88 0.94
91 4 0.04
ACGTcount: A:0.19, C:0.34, G:0.27, T:0.19
Consensus pattern (90 bp):
TGCATCGAACACCATCGGCACAGGCTGACCCTTGGCACTGGCAATTGCCTCGACCACCATCGGCA
CAAGATGGCCCCTGGTGCGAGCAGT
Found at i:1413142 original size:90 final size:90
Alignment explanation
Indices: 1412979--1413143 Score: 235
Period size: 90 Copynumber: 1.8 Consensus size: 90
1412969 TTTTGGTATG
* * * * *
1412979 GGCACTTGCCTCGACCGCCATCGGCACAAGCTAGGCCCTGGTGCAGGCAGTTGCCTCGATCACCA
1 GGCAATTGCCTCGACCACCATCGGCACAAGATAGGCCCTGGTGCAGGCAGTTGCATCGAACACCA
1413044 TCGGCACATGCTGGCCCTTGGCACT
66 TCGGCACATGCTGGCCCTTGGCACT
*
1413069 GGCAATTGCCTCGACCACCATCGGCACAAGAT-GGCCCCTGGTGC-GAGCGGTTGCATCGAACAC
1 GGCAATTGCCTCGACCACCATCGGCACAAGATAGG-CCCTGGTGCAG-GCAGTTGCATCGAACAC
*
1413132 CGTCGGCACATG
64 CATCGGCACATG
1413144 TTGGGCCGTG
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
89 3 0.05
90 63 0.95
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.18
Consensus pattern (90 bp):
GGCAATTGCCTCGACCACCATCGGCACAAGATAGGCCCTGGTGCAGGCAGTTGCATCGAACACCA
TCGGCACATGCTGGCCCTTGGCACT
Found at i:1413156 original size:45 final size:45
Alignment explanation
Indices: 1412984--1413189 Score: 150
Period size: 45 Copynumber: 4.6 Consensus size: 45
1412974 GTATGGGCAC
* * * * *
1412984 TTGCCTCGACCGCCATCGGCACAAGCTAGG-CCCTGGTGC-AGGCAG
1 TTGCCTCGAACACCATCGGCACATG-TTGGCCCCTGGTGCGA-GCGG
* * * ** **
1413029 TTGCCTCGATCACCATCGGCACATGCTGGCCCTTGGCACTG-GCAA
1 TTGCCTCGAACACCATCGGCACATGTTGGCCCCTGGTGC-GAGCGG
* * *
1413074 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGAGCGG
1 TTGCCTCGAACACCATCGGCACATGTTGGCCCCTGGTGCGAGCGG
* * * * * *
1413119 TTGCATCGAACACCGTCGGCACATGTTGGGCCGTGGTGCGGGTGG
1 TTGCCTCGAACACCATCGGCACATGTTGGCCCCTGGTGCGAGCGG
*
1413164 TTGCCTC-AACCACCATCGACACATGT
1 TTGCCTCGAA-CACCATCGGCACATGT
1413190 CGAGCAGCGA
Statistics
Matches: 127, Mismatches: 29, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
44 5 0.04
45 122 0.96
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.19
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACATGTTGGCCCCTGGTGCGAGCGG
Found at i:1413168 original size:90 final size:90
Alignment explanation
Indices: 1412978--1413186 Score: 224
Period size: 90 Copynumber: 2.3 Consensus size: 90
1412968 CTTTTGGTAT
* * * * *
1412978 GGGCACTTGCCTCGACCGCCATCGGCACAAGCTAGGCCCTGGTGCAGGCAGTTGCCTCGATCACC
1 GGGCAATTGCCTCGACCACCATCGGCACAAGATAGGCCCTGGTGCAGGCAGTTGCATCGAACACC
*
1413043 ATCGGCACATGCTGGCCCTTGGCAC
66 ATCGGCACATGCTGGCCCGTGGCAC
* *
1413068 TGGCAATTGCCTCGACCACCATCGGCACAAGAT-GGCCCCTGGTGC-GAGCGGTTGCATCGAACA
1 GGGCAATTGCCTCGACCACCATCGGCACAAGATAGG-CCCTGGTGCAG-GCAGTTGCATCGAACA
* * * **
1413131 CCGTCGGCACATGTTGGGCCGTGGTGC
64 CCATCGGCACATGCTGGCCCGTGGCAC
*** * *
1413158 GGGTGGTTGCCTCAACCACCATCGACACA
1 GGGCAATTGCCTCGACCACCATCGGCACA
1413187 TGTCGAGCAG
Statistics
Matches: 98, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
89 3 0.03
90 95 0.97
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (90 bp):
GGGCAATTGCCTCGACCACCATCGGCACAAGATAGGCCCTGGTGCAGGCAGTTGCATCGAACACC
ATCGGCACATGCTGGCCCGTGGCAC
Found at i:1413664 original size:26 final size:26
Alignment explanation
Indices: 1413628--1413680 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1413618 CCAGTCTGAT
1413628 CTTAGACTGGGAAAGAACTGC-GTATG
1 CTTAGACTGGGAAAGAACT-CTGTATG
*
1413654 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
1413680 C
1 C
1413681 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:1414569 original size:45 final size:45
Alignment explanation
Indices: 1414490--1414643 Score: 175
Period size: 45 Copynumber: 3.4 Consensus size: 45
1414480 GTATAGGCAC
* * *
1414490 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCTTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAATCTGGGCCTTGGTGCGGGCGG
* * *
1414535 TTGCCTCGACCACCATCGGCACAATATGGCCCTTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAATCTGGGCCTTGGTGCGGGCGG
* * * * * *
1414580 TTGCATCGAACACCATCAGCAC-GTGCTGGGTCGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAT-CTGGGCCTTGGTGCGGGCGG
*
1414625 CTGCCTCGACCACCATCGG
1 TTGCCTCGACCACCATCGG
1414644 TACATGTCGA
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 1 0.01
45 88 0.99
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAATCTGGGCCTTGGTGCGGGCGG
Found at i:1416185 original size:26 final size:26
Alignment explanation
Indices: 1416146--1416198 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1416136 TCGGTCCAAT
1416146 CTTAGACTGAGAATG-AGCTCCGTATG
1 CTTAGACTGAGAATGAAG-TCCGTATG
* *
1416172 CTTAGATTGGGAATGAAGTCCGTATG
1 CTTAGACTGAGAATGAAGTCCGTATG
1416198 C
1 C
1416199 CTAAGTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAAGTCCGTATG
Found at i:1416538 original size:26 final size:26
Alignment explanation
Indices: 1416502--1416554 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1416492 TCGGTCTGAT
*
1416502 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACCCCGTATG
* *
1416528 CTTAGACTGGGGATGAACCCCGTATG
1 CTTAGAATGGGAATGAACCCCGTATG
1416554 C
1 C
1416555 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACCCCGTATG
Found at i:1417545 original size:45 final size:44
Alignment explanation
Indices: 1417496--1417652 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 44
1417486 GTATGGGCAC
* *
1417496 TTGCCTCAACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGTGG
1 TTGCCTCAACCACCATCGGCACAAGATGGGCCCTGGTGC-GGTGG
* * *
1417541 TTGCCTCTACCACCATCGGCACAATAT-GGCCCTGGTGCGAGCGG
1 TTGCCTCAACCACCATCGGCACAAGATGGGCCCTGGTGCG-GTGG
* * * * *
1417585 TTGCATCGAA-CACCATCGGCACATGTTGGGCCATGGTGTGGTTGG
1 TTGCCTC-AACCACCATCGGCACAAGATGGGCCCTGGTGCGG-TGG
* * *
1417630 TTGCCTCGACAACCATCTGCACA
1 TTGCCTCAACCACCATCGGCACA
1417653 TGTCGAGCCC
Statistics
Matches: 90, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
43 1 0.01
44 36 0.40
45 53 0.59
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.22
Consensus pattern (44 bp):
TTGCCTCAACCACCATCGGCACAAGATGGGCCCTGGTGCGGTGG
Found at i:1417587 original size:44 final size:45
Alignment explanation
Indices: 1417496--1417622 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 45
1417486 GTATGGGCAC
* * *
1417496 TTGCCTCAACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGTGG
1 TTGCCTCAACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGG
* *
1417541 TTGCCTCTACCACCATCGGCACAATAT-GGCCCTGGTGC-GAGCGG
1 TTGCCTCAACCACCATCGGCACAAGATGGGCCCTGGTGCAG-GCGG
* * * *
1417585 TTGCATCGAA-CACCATCGGCACATGTTGGGCCATGGTG
1 TTGCCTC-AACCACCATCGGCACAAGATGGGCCCTGGTG
1417623 TGGTTGGTTG
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
43 1 0.01
44 34 0.50
45 33 0.49
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGG
Found at i:1418485 original size:26 final size:26
Alignment explanation
Indices: 1418434--1418486 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1418424 CCAGTCTGAT
* *
1418434 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1418460 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1418486 C
1 C
1418487 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1420252 original size:26 final size:26
Alignment explanation
Indices: 1420223--1420275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1420213 CCGGTCTGAT
*
1420223 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1420249 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1420275 C
1 C
1420276 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1421230 original size:45 final size:45
Alignment explanation
Indices: 1421181--1421338 Score: 136
Period size: 45 Copynumber: 3.5 Consensus size: 45
1421171 GTACGGGCAC
* * * * * *
1421181 TTGCCTCGACCGCTATCGGTACAAGCTGGGCCCTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
*
1421226 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
** * * * * ** * *
1421271 TTGTATCGAACACCATCGTCACATGCTGGGTCGTGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
* * *
1421316 TTGCCTCCACCATCATCGACACA
1 TTGCCTCGACCACCATCGGCACA
1421339 TGTCGAGCCC
Statistics
Matches: 89, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
Found at i:1422098 original size:26 final size:26
Alignment explanation
Indices: 1422062--1422114 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1422052 CCAGTTCAAT
*
1422062 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1422088 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1422114 C
1 C
1422115 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1425817 original size:12 final size:12
Alignment explanation
Indices: 1425802--1425843 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
1425792 TGCTGTCGAA
1425802 CCTGCTGCTGGT
1 CCTGCTGCTGGT
**
1425814 CCTGCTG-TCGAA
1 CCTGCTGCT-GGT
1425826 CCTGCTGCTGGT
1 CCTGCTGCTGGT
1425838 CCTGCT
1 CCTGCT
1425844 ATTGCAACCC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 1 0.04
12 22 0.92
13 1 0.04
ACGTcount: A:0.05, C:0.36, G:0.29, T:0.31
Consensus pattern (12 bp):
CCTGCTGCTGGT
Found at i:1425824 original size:24 final size:24
Alignment explanation
Indices: 1425792--1425843 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
1425782 CCCCCCTGCA
1425792 TGCTGTCGAACCTGCTGCTGGTCC
1 TGCTGTCGAACCTGCTGCTGGTCC
1425816 TGCTGTCGAACCTGCTGCTGGTCC
1 TGCTGTCGAACCTGCTGCTGGTCC
1425840 TGCT
1 TGCT
1425844 ATTGCAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.08, C:0.33, G:0.29, T:0.31
Consensus pattern (24 bp):
TGCTGTCGAACCTGCTGCTGGTCC
Found at i:1425898 original size:26 final size:26
Alignment explanation
Indices: 1425869--1425921 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
1425859 TCGGTCTAAT
1425869 CTTAGACT-GGGAATGAACT-TCGTATG
1 CTTAGACTAGGG-ATGAACTCT-GTATG
1425895 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
1425921 C
1 C
1425922 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:1426874 original size:45 final size:45
Alignment explanation
Indices: 1426825--1426940 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
1426815 GGCACATGCA
** *
1426825 TCGACCATTATCGGCACAGGCT-GCCCTTTGGTACGGGCACTTACC
1 TCGACCACCATCGGCACAAGCTGGCCC-TTGGTACGGGCACTTACC
* * ** *
1426870 TCGACCGCCATCGGCACAAGCTGGGCCTTGGTACGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGCCCTTGGTACGGGCACTTACC
* *
1426915 TCGACCACCATCGGTACAAGATGGCC
1 TCGACCACCATCGGCACAAGCTGGCC
1426941 TCTGGTGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
45 55 0.95
46 3 0.05
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGCCCTTGGTACGGGCACTTACC
Found at i:1427024 original size:45 final size:44
Alignment explanation
Indices: 1426868--1427022 Score: 141
Period size: 45 Copynumber: 3.5 Consensus size: 44
1426858 CGGGCACTTA
* * ** *
1426868 CCTCGACCGCCATCGGCACAAGCTGGGCCTTGGTACGGGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGTC-TGGTGTGGACGGTTG
* * * *
1426913 CCTCGACCACCATCGGTACAAGATGGCCTCTGGTGT-CAGCGGTTG
1 CCTCGACCACCATCGGCACAAGCTGG-GTCTGGTGTGGA-CGGTTG
* * * *
1426958 CATCGAACACCATCGGTACATGCTGGGTCGTGGTGTGGACGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGGTC-TGGTGTGGACGGTTG
*
1427003 CCTCGACCACCATCGACACA
1 CCTCGACCACCATCGGCACA
1427023 TGTCGAACCA
Statistics
Matches: 87, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
44 2 0.02
45 83 0.95
46 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (44 bp):
CCTCGACCACCATCGGCACAAGCTGGGTCTGGTGTGGACGGTTG
Found at i:1429022 original size:45 final size:45
Alignment explanation
Indices: 1428840--1429034 Score: 169
Period size: 45 Copynumber: 4.3 Consensus size: 45
1428830 GCCTTGACTG
* * * * * * *
1428840 CCATCAGCACAAGCTGGGCCTTAGTGTGAGCAGTTGCCTTAATCA
1 CCATCAGCACATGCTGGCCCTTGGTGCGAGCAATTGCCTCAACCA
* *
1428885 CCATCGGCACATGCTGGCCCTTGGTGCGAGCAATTGCCTCGACCA
1 CCATCAGCACATGCTGGCCCTTGGTGCGAGCAATTGCCTCAACCA
* * * *
1428930 CCATCAGCACAAT-ATGGCCCATGATGCGAGCAATTGCATCGAA-CA
1 CCATCAGCAC-ATGCTGGCCCTTGGTGCGAGCAATTGCCTC-AACCA
* ** * **
1428975 CCATCAGCACATGCTGGGCGGTGGTGCGGGCGGTTGCCTCAACCA
1 CCATCAGCACATGCTGGCCCTTGGTGCGAGCAATTGCCTCAACCA
* *
1429020 CCATCGGCATATGCT
1 CCATCAGCACATGCT
1429035 ATACCTCGGT
Statistics
Matches: 120, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
44 4 0.03
45 113 0.94
46 3 0.03
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (45 bp):
CCATCAGCACATGCTGGCCCTTGGTGCGAGCAATTGCCTCAACCA
Found at i:1429519 original size:26 final size:26
Alignment explanation
Indices: 1429483--1429535 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1429473 TCGGTTCGAT
* *
1429483 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCAGTATG
1429509 CTTACACTGGGAATGAACTCAGTATG
1 CTTACACTGGGAATGAACTCAGTATG
1429535 C
1 C
1429536 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCAGTATG
Found at i:1430894 original size:45 final size:45
Alignment explanation
Indices: 1430723--1430892 Score: 187
Period size: 45 Copynumber: 3.8 Consensus size: 45
1430713 GGCTGCCCTT
** * * * * *
1430723 TGGTACGGGCACTTGGCTCGACCGCTATCGGCATAAGCTGGGCCC
1 TGGTACGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
* * *
1430768 TAGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGCCCC
1 TGGTACGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
* * * * * * *
1430813 TGGTGCGGGCGGTTGCATCGAACACCATTGGCACATGTTGGGCCG
1 TGGTACGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
1430858 TGGTACGGGCGGTTGCCTCGACCACCATCGGCACA
1 TGGTACGGGCGGTTGCCTCGACCACCATCGGCACA
1430893 TGCCGAGCCC
Statistics
Matches: 103, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 103 1.00
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (45 bp):
TGGTACGGGCGGTTGCCTCGACCACCATCGGCACAAGATGGGCCC
Found at i:1431889 original size:195 final size:193
Alignment explanation
Indices: 1431518--1432091 Score: 602
Period size: 195 Copynumber: 2.9 Consensus size: 193
1431508 TCTGGCTGGG
* * * * *
1431518 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAA-CCTACGAAACGAACGTGTGGGCGCTCA
1 GCTTAGATATGGAATGAACTTCGTATGCCTAAGACAACCCTA--AAACGAGCGTGCGGGCGCTCA
* * * * * * *
1431582 GCCGACCGAAGAGGTAGAATGCGCAAGTCGGGGATCAGCCCATTCCCACCTGCGTGCTGTCGATC
64 GCCGACAGAA-AGGCAGAATGCGCAAGCCGAGGATCGGCCGA-TCCCACCTGCGTGCTATCGATC
* **
1431647 CTGCTGCTGGTCCTGCTATCGCAACCCTCGATCTAGTCTGATCTTAGACTGGGAATGAACTCCGC
127 CTGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGC
1431712 AT
192 AT
1431714 GCTTAGATATGGAATGAACTTCGTATGCCTAAGACAACCCGTAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGATATGGAATGAACTTCGTATGCCTAAGACAACCC-TAAAACGAGCGTGCGGGCGCTCAG
*
1431779 CCGATCGGAAAGGCAGAATGCGCAAGCCGAGGATCGGCTCGATCCC-CCTGCGTGCTATCGATCC
65 CCGA-CAGAAAGGCAGAATGCGCAAGCCGAGGATCGGC-CGATCCCACCTGCGTGCTATCGATCC
* * * * * *
1431843 TGCTGCTAGTCCTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGTGAATGAACTCTGTA
128 TGCTGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGCA
1431908 T
193 T
* * * * * *
1431909 GCTTAGACT-GGGGATGAAC-TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGCGTGCTC
1 GCTTAGA-TATGGAATGAACTTC-GTATGCCTAAGACAACCC-TAAAACGAGCGTGCGGGCGCTC
* * * * * ** * *
1431972 AGCCAGCCAGAGAGGCAGGATGCGCAAGCC-AGGGATCGACCTGGTCCCTTCTACGTGCTACCGA
63 AGCC-GACAGAAAGGCAGAATGCGCAAGCCGA-GGATCGGCC-GATCCCACCTGCGTGCTATCGA
** * * *
1432036 TCCCACTGCGGGTCCTGCTACTGCAACCCTTC-ATCCGGTCTGATCTTAGGCTGGGA
125 TCCTGCTGCTGGTCCTGCTACCGCAACCC-TCGATCCGGTCTGATCTTAGACTGGGA
1432092 GTGCACTACG
Statistics
Matches: 321, Mismatches: 46, Indels: 22
0.83 0.12 0.06
Matches are distributed among these distances:
194 4 0.01
195 161 0.50
196 144 0.45
197 10 0.03
198 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (193 bp):
GCTTAGATATGGAATGAACTTCGTATGCCTAAGACAACCCTAAAACGAGCGTGCGGGCGCTCAGC
CGACAGAAAGGCAGAATGCGCAAGCCGAGGATCGGCCGATCCCACCTGCGTGCTATCGATCCTGC
TGCTGGTCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGCAT
Found at i:1431913 original size:26 final size:26
Alignment explanation
Indices: 1431884--1431936 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1431874 CCGGTCTGAT
*
1431884 CTTAGACTGTGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
1431910 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1431936 C
1 C
1431937 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1432960 original size:90 final size:90
Alignment explanation
Indices: 1432835--1433039 Score: 220
Period size: 90 Copynumber: 2.3 Consensus size: 90
1432825 TGATAGCACA
* * * * *
1432835 TGCATCGACCATCATCGGCACAGGCTG-CCCTTTGGTACGGGC-ACTTGCCTCGACCACCATCG-
1 TGCATCGAACACCATCGGCACATGCCGACCC-TTGGTACGAGCGA-TTGCCTCGACCACCATCGA
* *
1432897 TCACAAGCTGGGCCCTGGTGC-AGGCAGT
64 T-ACAAGATGGCCCCTGGTGCGA-GCAGT
* * * **
1432925 TGCCTCGATCACCATTGGCACATGCCGACCCTTGGTGTGAGCGATTGCCTCGACCACCATCGATA
1 TGCATCGAACACCATCGGCACATGCCGACCCTTGGTACGAGCGATTGCCTCGACCACCATCGATA
*
1432990 CAAGATGGCCCCTGGTGCGAGCGGT
66 CAAGATGGCCCCTGGTGCGAGCAGT
*
1433015 TGCATCGAACACCATCGGTACATGC
1 TGCATCGAACACCATCGGCACATGC
1433040 TGGGCTGTGG
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
90 89 0.94
91 6 0.06
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (90 bp):
TGCATCGAACACCATCGGCACATGCCGACCCTTGGTACGAGCGATTGCCTCGACCACCATCGATA
CAAGATGGCCCCTGGTGCGAGCAGT
Found at i:1433051 original size:90 final size:90
Alignment explanation
Indices: 1432879--1433081 Score: 216
Period size: 90 Copynumber: 2.3 Consensus size: 90
1432869 GTACGGGCAC
* * * * *
1432879 TTGCCTCGACCACCATCGTCACAAGCTGGGCCCTGGTGCAGGCAGTTGCCTCGATCACCATTGGC
1 TTGCCTCGACCACCATCGTCACAAGATGGCCCCTGGTGCAGGCAGTTGCATCGAACACCATCGGC
*
1432944 ACATGCCGACCCTTGGTG-TGAGCGA
66 ACATGCCGACCCTTGGTGCAGA-CGA
*
1432969 TTGCCTCGACCACCATCGAT-ACAAGATGGCCCCTGGTGC-GAGCGGTTGCATCGAACACCATCG
1 TTGCCTCGACCACCATCG-TCACAAGATGGCCCCTGGTGCAG-GCAGTTGCATCGAACACCATCG
* * ** *
1433032 GTACATGCTG-GGCTGTGGTGCAGACGG
64 GCACATGCCGACCCT-TGGTGCAGACGA
* *
1433059 TTGCCTTGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGTCACA
1433082 TGCCAAGCCT
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
89 3 0.03
90 88 0.94
91 3 0.03
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGTCACAAGATGGCCCCTGGTGCAGGCAGTTGCATCGAACACCATCGGC
ACATGCCGACCCTTGGTGCAGACGA
Found at i:1433083 original size:45 final size:46
Alignment explanation
Indices: 1432879--1433084 Score: 186
Period size: 45 Copynumber: 4.6 Consensus size: 46
1432869 GTACGGGCAC
* * * *
1432879 TTGCCTCGACCACCATCGTCACAAGCTGGGCCCTGGTGCAG-GCAG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGAGCGG
* * * * * * *
1432924 TTGCCTCGATCACCATTGGCACATGCCGACCCTTGGTG-TGAGCGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGAGCGG
** * *
1432969 TTGCCTCGACCACCATCGATACAAGATGGCCCCTGGTGC-GAGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGAGCGG
* * * * **
1433014 TTGCATCGAACACCATCGGTACATGCTGGGCTGTGGTGCAGA-CGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGAGCGG
*
1433059 TTGCCTTGACCACCATCGGCACATGC
1 TTGCCTCGACCACCATCGGCACATGC
1433085 CAAGCCTTGG
Statistics
Matches: 125, Mismatches: 33, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
44 1 0.01
45 122 0.98
46 2 0.02
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (46 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCAGAGCGG
Found at i:1437747 original size:26 final size:26
Alignment explanation
Indices: 1437695--1437748 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
1437685 TGGGTTGACT
*
1437695 TAGGCATACGGAGTTCATTCCCGGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
* *
1437721 TAGGCATATGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
1437747 TA
1 TA
1437749 AGATTGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:1438261 original size:45 final size:44
Alignment explanation
Indices: 1438188--1438432 Score: 233
Period size: 45 Copynumber: 5.5 Consensus size: 44
1438178 AACCGAGGCT
*
1438188 CAGCATGTGTCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGG-C
* *
1438233 CAGCATGTGCCGATGGTGTTCGATGCAACTGCCCGCACCAGAGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAG-GGC
* * * * * *
1438278 TATCTTATGCCGATGGTGGTCGAGGCAA-TCACCCACACCAAGGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACC-AGGGC
* * *
1438323 CGGCATGTGCTGATGGTGATCGAGGCAACTGCCCGCACCAGGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGC
* * ** * *
1438367 CTAGCTTGTGCTGATGGCAGTCGAGGCAAGTGCCCGTACCAAAGGG-
1 C-AGCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACC--AGGGC
* *
1438413 CAGCCTGTGCCGATGATGGT
1 CAGCATGTGCCGATGGTGGT
1438433 TGATGCATGC
Statistics
Matches: 161, Mismatches: 32, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
44 7 0.04
45 144 0.89
46 6 0.04
47 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (44 bp):
CAGCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGC
Found at i:1438452 original size:135 final size:135
Alignment explanation
Indices: 1438190--1438432 Score: 321
Period size: 135 Copynumber: 1.8 Consensus size: 135
1438180 CCGAGGCTCA
* *
1438190 GCATGTGTCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGGTGTTCG
1 GCATGTGTCGATGGTGATCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGGAGTTCG
* * * * *
1438255 ATGCAACTGCCCGCACCAGAGGCTATCTTATGCCGATGGTGGTCGAGGCAATCACCCACACCAAG
66 AGGCAACTGCCCGCACCAAAGGCTAGCCTATGCCGATGATGGTCGAGGCAATCACCCACACCAAG
1438320 GGCCG
131 GGCCG
* * *
1438325 GCATGTG-CTGATGGTGATCGAGGCAACTGCCCGCACCAGGGCCTAGCTTGTGCTGATGGCAG-T
1 GCATGTGTC-GATGGTGATCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGG-AGTT
* * *
1438388 CGAGGCAAGTGCCCGTACCAAAGGGC-AGCCTGTGCCGATGATGGT
64 CGAGGCAACTGCCCGCACCAAA-GGCTAGCCTATGCCGATGATGGT
1438433 TGATGCATGC
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
134 1 0.01
135 87 0.95
136 4 0.04
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (135 bp):
GCATGTGTCGATGGTGATCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGGAGTTCG
AGGCAACTGCCCGCACCAAAGGCTAGCCTATGCCGATGATGGTCGAGGCAATCACCCACACCAAG
GGCCG
Found at i:1438465 original size:135 final size:136
Alignment explanation
Indices: 1438188--1438467 Score: 311
Period size: 135 Copynumber: 2.1 Consensus size: 136
1438178 AACCGAGGCT
* *
1438188 CAGCATGTG-TCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGGTGT
1 CAGCATGTGCTCGATGGTGATCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGGAGT
* * * * *
1438252 TCGATGCAACTGCCCGCACCAGAGGCTATCTTATGCCGATGGTGGTCGAGGCAATCACCCACACC
66 TCGAGGCAACTGCCCGCACCAAAGGCTAGCCTATGCCGATGATGGTCGAGGCAATCACCCACACC
*
1438317 AAGGGC
131 AAGCGC
* * * *
1438323 CGGCATGTGCT-GATGGTGATCGAGGCAACTGCCCGCACCAGGGCCTAGCTTGTGCTGATGGCAG
1 CAGCATGTGCTCGATGGTGATCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGG-AG
* * * * *
1438387 -TCGAGGCAAGTGCCCGTACCAAAGGGC-AGCCTGTGCCGATGATGGTTGATGC-ATGCA-CCAT
65 TTCGAGGCAACTGCCCGCACCAAA-GGCTAGCCTATGCCGATGATGGTCGAGGCAAT-CACCCA-
*
1438448 CACCATGCGC
127 CACCAAGCGC
*
1438458 CATCATGTGC
1 CAGCATGTGC
1438468 CATTGATGGT
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
134 5 0.04
135 110 0.92
136 5 0.04
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.19
Consensus pattern (136 bp):
CAGCATGTGCTCGATGGTGATCGAGGCAACTGCCCGCACCAGGGCCCAGCATGTGCCGATGGAGT
TCGAGGCAACTGCCCGCACCAAAGGCTAGCCTATGCCGATGATGGTCGAGGCAATCACCCACACC
AAGCGC
Found at i:1439350 original size:26 final size:26
Alignment explanation
Indices: 1439315--1439367 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1439305 GTTGACTTAG
*
1439315 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
*
1439341 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
1439367 G
1 G
1439368 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:1439546 original size:25 final size:25
Alignment explanation
Indices: 1439512--1439589 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 25
1439502 GTTGACTTAG
* * *
1439512 GCATACGGAGTTTATTCCAGTCTAA
1 GCATATGGAGTTCATCCCAGTCTAA
1439537 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCAT-CCCAGTCTAA
*
1439563 GCACATGGAGTTCACTCCCAGTCTAA
1 GCATATGGAGTTCA-TCCCAGTCTAA
1439589 G
1 G
1439590 ATCAGACCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
25 13 0.28
26 33 0.70
27 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATATGGAGTTCATCCCAGTCTAA
Found at i:1439710 original size:222 final size:223
Alignment explanation
Indices: 1439315--1439761 Score: 592
Period size: 222 Copynumber: 2.0 Consensus size: 223
1439305 GTTGACTTAG
* * ** * *
1439315 GCATACGGAGTTCATCCCCAGTCTAAGCATAAGGAGTTCATTCCCAGTCTAAGATTGGATCGGAC
1 GCATACGGAGTTCATCCCCAGTCTAAGCACAAGGAGTTCACTCCCAGTCTAAGATCAGACCGAAC
* * *
1439380 CGAGGGTTGCGGCAGCAGGACCAGCAGTAGGATCGACAGCACGCAGGGGGGAACCGGGCATATCC
66 CGAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGAACCGGGCAGATCC
* * ** * * * *
1439445 CCGGCTTGTGCATTCTGCCTCTCCGACCGGCTGAACGCCCGCACGCTCATTTTGTGGGTTGACTT
131 CCGACCTGCACATTCTACCTCTCCGACCGACTGAACCCCCGCACGCTCATTTCGTGGGTTGACTT
* *
1439510 AGGCATACGGAGTTTATTCCA-GTCTAA
196 AGGCATACGAAGTTCATTCCATGTCTAA
* *
1439537 GCATATGGAGTTCATCCCCAGTCTAAGCACATGGAGTTCACTCCCAGTCTAAGATCAGACCGAAC
1 GCATACGGAGTTCATCCCCAGTCTAAGCACAAGGAGTTCACTCCCAGTCTAAGATCAGACCGAAC
* * * * *
1439602 TGAGGGTTGCGATAGCAGGACCAGCAGCAGGATCGACAGCATGCAGGGAGGG-ACTGGGCCGATC
66 CGAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGG-GGGAACCGGGCAGATC
* * * *
1439666 CCCGACCTGCACATTCTACCTCTCCGGCCGACTGAGCCCCCGCACGCTCGTTTCGTGGGTTGGCT
130 CCCGACCTGCACATTCTACCTCTCCGACCGACTGAACCCCCGCACGCTCATTTCGTGGGTTGACT
*
1439731 TAGGCATACGAAGTTCATTCCATTTCTAA
195 TAGGCATACGAAGTTCATTCCATGTCTAA
1439760 GC
1 GC
1439762 CCCAATCAGA
Statistics
Matches: 192, Mismatches: 31, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
222 182 0.95
223 10 0.05
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (223 bp):
GCATACGGAGTTCATCCCCAGTCTAAGCACAAGGAGTTCACTCCCAGTCTAAGATCAGACCGAAC
CGAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGACAGCACGCAGGGGGGAACCGGGCAGATCC
CCGACCTGCACATTCTACCTCTCCGACCGACTGAACCCCCGCACGCTCATTTCGTGGGTTGACTT
AGGCATACGAAGTTCATTCCATGTCTAA
Found at i:1440582 original size:45 final size:44
Alignment explanation
Indices: 1440456--1440593 Score: 136
Period size: 45 Copynumber: 3.1 Consensus size: 44
1440446 TGATGCAACC
*
1440456 GCCCGCACCAAGGGCCATCTTATGCCGATGGTGGTCGAGGCAA-T
1 GCCCGCACCAAGGG-CAGCTTATGCCGATGGTGGTCGAGGCAAGT
* *** *
1440500 CACCCGCACCAAGGGCTAGCATT-TGTTAATGGCGGTCGAGGCAAGT
1 -GCCCGCACCAAGGGC-AGC-TTATGCCGATGGTGGTCGAGGCAAGT
* * *
1440546 GCCCGTACCAAAGGGCAGCTTATGCCGATGATGGTCGATGCAAGT
1 GCCCGCACC-AAGGGCAGCTTATGCCGATGGTGGTCGAGGCAAGT
1440591 GCC
1 GCC
1440594 ATCACCATGC
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
44 3 0.04
45 62 0.84
46 9 0.12
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (44 bp):
GCCCGCACCAAGGGCAGCTTATGCCGATGGTGGTCGAGGCAAGT
Found at i:1441517 original size:26 final size:26
Alignment explanation
Indices: 1441487--1441539 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1441477 GTTGACTTAG
* *
1441487 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
*
1441513 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
1441539 G
1 G
1441540 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:1441873 original size:26 final size:26
Alignment explanation
Indices: 1441843--1441895 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1441833 GTTGACTTAG
*
1441843 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
1441869 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
1441895 G
1 G
1441896 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:1442432 original size:45 final size:45
Alignment explanation
Indices: 1442336--1442442 Score: 133
Period size: 45 Copynumber: 2.4 Consensus size: 45
1442326 CGAGGCTCGA
* *
1442336 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCACTGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCACACCACGGCCCAG
* * * * *
1442381 CATGTGCCGATGGTGTTCGATGCAACTGCCCACACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCACACCACGGCCCAG
* *
1442426 CTTGTGCCGATGTTGGT
1 CATGTGCCGATGGTGGT
1442443 TGAAGCAATC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACTGCCCACACCACGGCCCAG
Found at i:1443128 original size:26 final size:26
Alignment explanation
Indices: 1443098--1443150 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1443088 GTTGACTTAG
*
1443098 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1443124 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1443150 G
1 G
1443151 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1443644 original size:45 final size:45
Alignment explanation
Indices: 1443587--1443767 Score: 184
Period size: 45 Copynumber: 4.0 Consensus size: 45
1443577 GGGCTTGTCA
* * * *
1443587 AGGCAACCGCCCGTACCACGGCCCAGCATGTGCCGATGGTGTTCG
1 AGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTCG
* * * *
1443632 ATGCAACGGCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTCG
1 AGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTCG
* * * *
1443677 AGGCAACCGCCCACACCAGGGCCCAGCTTGTGTCGATGGCGGTCG
1 AGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTCG
** * * * *
1443722 AGGCAAGTGCCCGTACCAAAGG-GCAGCCTGTGCCGATGATGGTCG
1 AGGCAACCGCCCGCACC-AAGGCCCAGCTTGTGCCGATGGTGGTCG
1443767 A
1 A
1443768 TGCATGTGCC
Statistics
Matches: 109, Mismatches: 26, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
45 106 0.97
46 3 0.03
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.15
Consensus pattern (45 bp):
AGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGTGGTCG
Found at i:1443784 original size:90 final size:90
Alignment explanation
Indices: 1443587--1443767 Score: 222
Period size: 90 Copynumber: 2.0 Consensus size: 90
1443577 GGGCTTGTCA
** * * *
1443587 AGGCAACCGCCCGTACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAACGGCCCGCACCAAG
1 AGGCAACCGCCCACACCACGGCCCAGCATGTGCCGATGGCGGTCGAGGCAACGGCCCGCACCAAG
* * *
1443652 GGCCATCTTGTGCCGATGGTGGTCG
66 GGCCAGCCTGTGCCGATGATGGTCG
* * * *
1443677 AGGCAACCGCCCACACCAGGGCCCAGCTTGTGTCGATGGCGGTCGAGGCAA-GTGCCCGTACCAA
1 AGGCAACCGCCCACACCACGGCCCAGCATGTGCCGATGGCGGTCGAGGCAACG-GCCCGCACC-A
1443741 AGGG-CAGCCTGTGCCGATGATGGTCG
64 AGGGCCAGCCTGTGCCGATGATGGTCG
1443767 A
1 A
1443768 TGCATGTGCC
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 1 0.01
90 71 0.92
91 5 0.06
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.15
Consensus pattern (90 bp):
AGGCAACCGCCCACACCACGGCCCAGCATGTGCCGATGGCGGTCGAGGCAACGGCCCGCACCAAG
GGCCAGCCTGTGCCGATGATGGTCG
Found at i:1444840 original size:45 final size:45
Alignment explanation
Indices: 1444790--1444976 Score: 187
Period size: 45 Copynumber: 4.2 Consensus size: 45
1444780 GGGTCCCCGA
* * * ** *
1444790 GCCGATGGTGTTTGATGCAACCAACCGCACCAGGGGCCATCATGT
1 GCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGGCCAGCATGT
* * *
1444835 GCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCATGT
1 GCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGGCCAGCATGT
* * *
1444880 GCCGATGGTGATCGAGGCAACCGCCCGCACTAGGGCCCAGCTTGT
1 GCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGGCCAGCATGT
* * ** * * *
1444925 GCCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGG-CAGCCTGT
1 GCCGATGGTGATCGAGGCAACCGCCCGCACC-AGGGGCCAGCATGT
1444970 GCCGATG
1 GCCGATG
1444977 ATGGTCGATG
Statistics
Matches: 118, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
45 115 0.97
46 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (45 bp):
GCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGGCCAGCATGT
Found at i:1444943 original size:90 final size:90
Alignment explanation
Indices: 1444790--1444976 Score: 234
Period size: 90 Copynumber: 2.1 Consensus size: 90
1444780 GGGTCCCCGA
* * * * * *
1444790 GCCGATGGTGTTTGATGCAACCAACCGCACCAGGGGCCATCATGTGCCGATGGTGGTCGAGGCAA
1 GCCGATGGTGATCGAGGCAACCAACCGCACCAGGGCCCAGCATGTGCCGATGGCGGTCGAGGCAA
1444855 -TCGCCCGCACC-AAGGGCCAGCATGT
66 GT-GCCCGCACCAAAGGG-CAGCATGT
** * *
1444880 GCCGATGGTGATCGAGGCAACCGCCCGCACTAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGCAA
1 GCCGATGGTGATCGAGGCAACCAACCGCACCAGGGCCCAGCATGTGCCGATGGCGGTCGAGGCAA
* *
1444945 GTGCCCGTACCAAAGGGCAGCCTGT
66 GTGCCCGCACCAAAGGGCAGCATGT
1444970 GCCGATG
1 GCCGATG
1444977 ATGGTCGATG
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
90 77 0.93
91 6 0.07
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (90 bp):
GCCGATGGTGATCGAGGCAACCAACCGCACCAGGGCCCAGCATGTGCCGATGGCGGTCGAGGCAA
GTGCCCGCACCAAAGGGCAGCATGT
Found at i:1444983 original size:45 final size:45
Alignment explanation
Indices: 1444814--1445032 Score: 203
Period size: 45 Copynumber: 4.9 Consensus size: 45
1444804 ATGCAACCAA
* *
1444814 CCGCACCAGGGGCCATCATGTGCCGATGGTGGTCGAGGCAA-TCGC
1 CCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAAGT-GC
* **
1444859 CCGCACCAAGGGCCAGCATGTGCCGATGGTGATCGAGGCAACCGC
1 CCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAAGTGC
* * *
1444904 CCGCA-CTAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGCAAGTGC
1 CCGCACCAAGGG-CCAGCATGTGCCGATGGTGGTCGAGGCAAGTGC
* * * * *
1444949 CCGTACCAAAGGG-CAGCCTGTGCCGATGATGGTCGATGCATGTGC
1 CCGCACC-AAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAAGTGC
** * * * *
1444994 CATCACCATGCGCCATCATGTGCC-ATTGATGGTCGAGGC
1 CCGCACCAAGGGCCAGCATGTGCCGA-TGGTGGTCGAGGC
1445033 CTTGGTCGAA
Statistics
Matches: 143, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
44 9 0.06
45 129 0.90
46 1 0.01
47 4 0.03
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
CCGCACCAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAAGTGC
Found at i:1446839 original size:45 final size:44
Alignment explanation
Indices: 1446648--1446843 Score: 160
Period size: 45 Copynumber: 4.4 Consensus size: 44
1446638 TCATTTATCG
* * * * * * *
1446648 ATGGTGGTCGAGGCAACTGCCCGTACCACGGCCTAGCATGTACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC-AACTTGTGCCA
* * * * *
1446693 ATGGTGTTCGATGCAACCGCTCGCACCAGGGGCCATCTTGTGCCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCAACTTGTGCCA
** * *
1446738 ATGGTGGTCGA-GCTAATTGCCCGCACCAAGGGCCAGCATGTGCCA
1 ATGGTGGTCGAGGC-AACCGCCCGCACC-AGGGCCAACTTGTGCCA
* * *
1446783 ATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAACTTGTGCCC
1 ATGGTGGTCGAGGCAACCGCCCGCACCAGGG-CCAACTTGTGCCA
*
1446828 ATGGCGGTCGAGGCAA
1 ATGGTGGTCGAGGCAA
1446844 GTGCCTGTAC
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
44 6 0.05
45 108 0.89
46 7 0.06
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.17
Consensus pattern (44 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCAACTTGTGCCA
Found at i:1446856 original size:90 final size:90
Alignment explanation
Indices: 1446648--1446871 Score: 256
Period size: 90 Copynumber: 2.5 Consensus size: 90
1446638 TCATTTATCG
* * * * *
1446648 ATGGTGGTCGAGGCAACTGCCCGTACC-ACGGCCTAGCATGTACCGATGGTGTTCGATGCAACCG
1 ATGGTGGTCGAGGCAACTGCCCGTACCAAGGGCC-AGCATGTGCCAATGGTGATCGAGGCAACCG
* * * * *
1446712 CTCGCACCAGGGGCCATCTTGTGCCG
65 CCCACACCAGGGCCCAACTTGTGCCC
* *
1446738 ATGGTGGTCGA-GCTAATTGCCCGCACCAAGGGCCAGCATGTGCCAATGGTGATCGAGGCAACCG
1 ATGGTGGTCGAGGC-AACTGCCCGTACCAAGGGCCAGCATGTGCCAATGGTGATCGAGGCAACCG
1446802 CCCACACCAGGGCCCAACTTGTGCCC
65 CCCACACCAGGGCCCAACTTGTGCCC
* * * *
1446828 ATGGCGGTCGAGGCAAGTGCCTGTACCAAAGGG-CAGCCTGTGCC
1 ATGGTGGTCGAGGCAACTGCCCGTACC-AAGGGCCAGCATGTGCC
1446872 GATGATGGTC
Statistics
Matches: 113, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
89 2 0.02
90 99 0.88
91 12 0.11
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.17
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAACTGCCCGTACCAAGGGCCAGCATGTGCCAATGGTGATCGAGGCAACCGC
CCACACCAGGGCCCAACTTGTGCCC
Found at i:1447821 original size:26 final size:26
Alignment explanation
Indices: 1447785--1447837 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1447775 GTTGACTTAG
1447785 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1447811 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1447837 G
1 G
1447838 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1448824 original size:13 final size:13
Alignment explanation
Indices: 1448806--1448830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1448796 ATGGTCGATG
1448806 CATGCGCCATCAC
1 CATGCGCCATCAC
1448819 CATGCGCCATCA
1 CATGCGCCATCA
1448831 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.44, G:0.16, T:0.16
Consensus pattern (13 bp):
CATGCGCCATCAC
Found at i:1449561 original size:27 final size:27
Alignment explanation
Indices: 1449531--1449588 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
1449521 CATGGGTTGA
1449531 CTAAGGCATACAGAGTTCATCCCCAGT
1 CTAAGGCATACAGAGTTCATCCCCAGT
* * *
1449558 CTAA-GCATACGGAGTTCATTCCCATT
1 CTAAGGCATACAGAGTTCATCCCCAGT
1449584 CTAAG
1 CTAAG
1449589 ACCGAATCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (27 bp):
CTAAGGCATACAGAGTTCATCCCCAGT
Found at i:1449928 original size:26 final size:26
Alignment explanation
Indices: 1449891--1449943 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1449881 GTTGACATAG
*
1449891 GCATATGAAGTTCATTCCCATTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
1449917 GCATAT-AGAGTTCATTCCCAGTCTAA
1 GCATATGA-AGTTCATTCCCAGTCTAA
1449943 G
1 G
1449944 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:1450419 original size:26 final size:26
Alignment explanation
Indices: 1450383--1450433 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1450373 GTTGACTTAG
1450383 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
1450409 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
1450434 CGATTAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1450558 original size:45 final size:44
Alignment explanation
Indices: 1450508--1450659 Score: 153
Period size: 45 Copynumber: 3.4 Consensus size: 44
1450498 GCCTCGAGCT
* * *
1450508 GATGGTGTTCGATGCAACCACCCGTACCAGGGGCCATCTTGTGCC
1 GATGGTGGTCGAGGCAACCACCCGCACCAGGGGCCA-CTTGTGCC
* * * * *
1450553 GATGGTGGTCGAGGTAATCACCCGCACCAAGGGCCGACATGTACC
1 GATGGTGGTCGAGGCAACCACCCGCACCAGGGGCC-ACTTGTGCC
* * * *
1450598 AATGGTGATCGAGGCAACCACCCACACCAGGGCCCAACTTGTGCCC
1 GATGGTGGTCGAGGCAACCACCCGCACCAGGGGCC-ACTTGTG-CC
1450644 G-TGGTGGTCGAGGCAA
1 GATGGTGGTCGAGGCAA
1450660 GTGCCCGTAC
Statistics
Matches: 85, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
45 82 0.96
46 3 0.04
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.17
Consensus pattern (44 bp):
GATGGTGGTCGAGGCAACCACCCGCACCAGGGGCCACTTGTGCC
Found at i:1450720 original size:13 final size:13
Alignment explanation
Indices: 1450702--1450726 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1450692 ATGGTCGATG
1450702 CATGTGCCATCAC
1 CATGTGCCATCAC
1450715 CATGTGCCATCA
1 CATGTGCCATCA
1450727 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1451626 original size:26 final size:26
Alignment explanation
Indices: 1451592--1451644 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1451582 GTTGACTTAG
*
1451592 GCATGCGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCAGT-CCCAGTCTAA
1451618 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
1451644 G
1 G
1451645 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:1452108 original size:136 final size:136
Alignment explanation
Indices: 1451858--1452109 Score: 335
Period size: 136 Copynumber: 1.9 Consensus size: 136
1451848 CTACAGCGCA
** ** * * *
1451858 CAGAGGGGGACCGGGCTGATCCTTGACTTGCGTATTATGCCTCTCTGGCCGGCTCAACGCCTGCA
1 CAGAGGGGGACCGGGCTGATCCTTGACTTGCACACCATGCCTCTCTGGCCGACTCAACACCCGCA
*
1451923 CGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGCAGC
66 CGCTCGTTTCATGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGCAGC
1451988 AACACG
131 AACACG
* * * * *
1451994 CAGAGGGGGACCTGGCTGATCCTTGGCTTGCACACCATGCCTCTCTGGTCGACTGAGCACCCGCA
1 CAGAGGGGGACCGGGCTGATCCTTGACTTGCACACCATGCCTCTCTGGCCGACTCAACACCCGCA
* * * *
1452059 TGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCC-GATCTAAG
66 CGCTCGTTTCATGGGTTCACTTAGGCATACAGAGTTCATTCCCAG-TCTAAG
1452110 CCCCAATCAG
Statistics
Matches: 98, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
135 1 0.01
136 97 0.99
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.25
Consensus pattern (136 bp):
CAGAGGGGGACCGGGCTGATCCTTGACTTGCACACCATGCCTCTCTGGCCGACTCAACACCCGCA
CGCTCGTTTCATGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGCAGC
AACACG
Found at i:1453425 original size:26 final size:26
Alignment explanation
Indices: 1453389--1453441 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1453379 GTTGACTTAG
1453389 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1453415 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1453441 G
1 G
1453442 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1460186 original size:45 final size:45
Alignment explanation
Indices: 1460135--1460264 Score: 136
Period size: 45 Copynumber: 2.9 Consensus size: 45
1460125 GACACCAGCA
* * * *
1460135 TGTGCCGATGGTGTTCGATGCTACCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
* ** *
1460180 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
* * * * *
1460225 TGTGTCGATGGTGATTGAGGCAACCGTCTGCACC-AGGGCC
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCC
1460265 CAGCTTGCAC
Statistics
Matches: 71, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 6 0.08
45 65 0.92
ACGTcount: A:0.16, C:0.30, G:0.35, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCT
Found at i:1461265 original size:26 final size:26
Alignment explanation
Indices: 1461236--1461288 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1461226 GTTGACTTAG
*
1461236 GCATACAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1461262 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1461288 G
1 G
1461289 ATCGGAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1462115 original size:45 final size:45
Alignment explanation
Indices: 1462059--1462167 Score: 116
Period size: 45 Copynumber: 2.4 Consensus size: 45
1462049 GGGCTCGGCA
* * *
1462059 TGTGCCAATGGT-GTTCGATGCAACCGCCCT-CACCAGGGGCCATCT
1 TGTGCCAATGGTGGTT-GAGGCAACCG-CCTGCACCAGGGCCCAACT
* *
1462104 TGTGCCGATGGTGGTTGAGGCAACCGCCTGTACCAGGGCCCAACT
1 TGTGCCAATGGTGGTTGAGGCAACCGCCTGCACCAGGGCCCAACT
* *
1462149 TGTG-CTATGGCGGTTGAGG
1 TGTGCCAATGGTGGTTGAGG
1462168 TAAGTACCCG
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
44 16 0.29
45 36 0.65
46 3 0.05
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.23
Consensus pattern (45 bp):
TGTGCCAATGGTGGTTGAGGCAACCGCCTGCACCAGGGCCCAACT
Found at i:1462231 original size:13 final size:13
Alignment explanation
Indices: 1462213--1462237 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1462203 ATGGTCGATG
1462213 CATGTGCCATCAC
1 CATGTGCCATCAC
1462226 CATGTGCCATCA
1 CATGTGCCATCA
1462238 TGTGCCATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1463145 original size:26 final size:26
Alignment explanation
Indices: 1463115--1463164 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1463105 GACTTAGGCG
1463115 TACGGAGTTCATCCCCAGTCTAAGCA
1 TACGGAGTTCATCCCCAGTCTAAGCA
* *
1463141 TACGGAGTTCATTCCCGGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
1463165 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCA
Found at i:1464277 original size:26 final size:26
Alignment explanation
Indices: 1464241--1464292 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1464231 GTTGACTTAG
1464241 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1464267 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1464293 TATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1469681 original size:45 final size:45
Alignment explanation
Indices: 1469615--1469767 Score: 173
Period size: 45 Copynumber: 3.4 Consensus size: 45
1469605 TGGCATATGT
* * *
1469615 CGATGGTGGTCGAGGCAACCGCCCGTACCACGGCCCAGCATGTGC
1 CGATGGTGGTCGACGCAACCGCCCGTACCAGGGCCCAGCTTGTGC
* ** * * *
1469660 CAATGGTTTTCGATGCAACCGCCCGCT-CCAGGGGCCATCTTGTGC
1 CGATGGTGGTCGACGCAACCGCCCG-TACCAGGGCCCAGCTTGTGC
* *
1469705 CGATGGTGGTCGACGCAACCGCCTGCACCAGGGCCCAGCTTGTGC
1 CGATGGTGGTCGACGCAACCGCCCGTACCAGGGCCCAGCTTGTGC
* *
1469750 CGATGGCGGTCGAGGCAA
1 CGATGGTGGTCGACGCAA
1469768 GTGCCCATAC
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
45 87 0.99
46 1 0.01
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (45 bp):
CGATGGTGGTCGACGCAACCGCCCGTACCAGGGCCCAGCTTGTGC
Found at i:1470790 original size:26 final size:26
Alignment explanation
Indices: 1470760--1470812 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1470750 GTTGACTTAG
1470760 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1470786 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1470812 G
1 G
1470813 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1471276 original size:45 final size:44
Alignment explanation
Indices: 1471226--1471428 Score: 174
Period size: 45 Copynumber: 4.5 Consensus size: 44
1471216 AGTTGGTTCG
* * *
1471226 GCATGTGTCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCA
* * ** *
1471271 GCATGTGCTGATGGTGTTCGATACAACCGACCGCACCAGAGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAG-GGCCA
* * * * * * * *
1471316 TCTTATGCCGATCGTGGTCGAGGTAATCACCCGCACCAAGGGCCG
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCA
* *
1471361 GCATGTGCCGATGGTGATCGAGGCAACCGCTCGCACTC-GGGCCTA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCAC-CAGGGCC-A
* *
1471406 GCTTGTGCCGATGGCGGTCGAGG
1 GCATGTGCCGATGGTGGTCGAGG
1471429 TAAGTGCCCG
Statistics
Matches: 120, Mismatches: 34, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
44 6 0.05
45 111 0.93
46 3 0.03
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.18
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCA
Found at i:1471396 original size:90 final size:90
Alignment explanation
Indices: 1471234--1471431 Score: 213
Period size: 90 Copynumber: 2.2 Consensus size: 90
1471224 CGGCATGTGT
* * * * * *
1471234 CGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCTGATGGTGTTCGATACAACC
1 CGATGGTGGTCGAGGTAACCACCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGACAACC
*
1471299 GACCGCAC-CAGAGGCC-ATCTTATGC
66 GACCGCACTC-G-GGCCTAGCTTATGC
* * * * * *
1471324 CGATCGTGGTCGAGGTAATCACCCGCACCAAGGGCCGGCATGTGCCGATGGTGATCGAGGCAACC
1 CGATGGTGGTCGAGGTAACCACCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGACAACC
*
1471389 G-CTCGCACTCGGGCCTAGCTTGTGC
66 GAC-CGCACTCGGGCCTAGCTTATGC
*
1471414 CGATGGCGGTCGAGGTAA
1 CGATGGTGGTCGAGGTAA
1471432 GTGCCCGTAC
Statistics
Matches: 89, Mismatches: 16, Indels: 6
0.80 0.14 0.05
Matches are distributed among these distances:
89 5 0.06
90 83 0.93
91 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (90 bp):
CGATGGTGGTCGAGGTAACCACCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGACAACC
GACCGCACTCGGGCCTAGCTTATGC
Found at i:1472759 original size:26 final size:26
Alignment explanation
Indices: 1472729--1472779 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1472719 GTTGACTTAG
*
1472729 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1472755 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1472780 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1473354 original size:45 final size:44
Alignment explanation
Indices: 1473277--1473425 Score: 138
Period size: 45 Copynumber: 3.3 Consensus size: 44
1473267 ACCACGACCT
* * * * *
1473277 AGCTTGTGTCGATGGTGTTCGATGTAACCGCCCGTACCAGGGGCC
1 AGCTTGTGCCGATGGTGTTTGA-GAAATCGCCCGCACCAGGGGCC
* * *
1473322 ATCTTGTGCCGATGGTGTTTGAGGCAATCGCCCGCACC-GTGGGTC
1 AGCTTGTGCCGATGGTGTTTGA-GAAATCGCCCGCACCAG-GGGCC
* * * * *
1473367 GGCATGTGCCGATGGTGATTGAGAAATCGCTCGCACCAGGGCCC
1 AGCTTGTGCCGATGGTGTTTGAGAAATCGCCCGCACCAGGGGCC
*
1473411 AGCTTGTGCTGATGG
1 AGCTTGTGCCGATGG
1473426 CAGTCGAGGC
Statistics
Matches: 83, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
44 29 0.35
45 54 0.65
ACGTcount: A:0.16, C:0.26, G:0.34, T:0.24
Consensus pattern (44 bp):
AGCTTGTGCCGATGGTGTTTGAGAAATCGCCCGCACCAGGGGCC
Found at i:1474413 original size:26 final size:26
Alignment explanation
Indices: 1474383--1474435 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1474373 GTTGACTTAG
* *
1474383 GCATACGGAATTCATCCCCAGTCTAA
1 GCATACAGAATTCATCCCCAATCTAA
* *
1474409 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAATTCATCCCCAATCTAA
1474435 G
1 G
1474436 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATCCCCAATCTAA
Found at i:1475237 original size:45 final size:45
Alignment explanation
Indices: 1475181--1475360 Score: 144
Period size: 45 Copynumber: 4.0 Consensus size: 45
1475171 GAGCCGATCG
*
1475181 GGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAC
1 GGGC-CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * * * * *
1475227 GGCCCAGCATGTGCCGATGGTGTTCGATGCAACTGCACGCATCAG
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * * ** * * *
1475272 GGGCCATCTTGTGCTGATGGTGGTCAAAACAATCACCCACACCAA
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * ** *
1475317 GGGTCGGCATGTGTCGATGGTAATCGAGGCAACCGCCCGTACCA
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
1475361 GGGTCCGTAC
Statistics
Matches: 97, Mismatches: 37, Indels: 1
0.72 0.27 0.01
Matches are distributed among these distances:
45 94 0.97
46 3 0.03
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
GGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
Found at i:1477269 original size:45 final size:44
Alignment explanation
Indices: 1477127--1477277 Score: 140
Period size: 45 Copynumber: 3.4 Consensus size: 44
1477117 TCAGGGCTCG
* * * *
1477127 GCATGTGCCGATGGTGGTCGAGGCAATCACCCTCACCATGGCCC
1 GCATGTGCCGATGGTGGTCGAGGCAATCGCCTTCACCAAGGGCC
* * * * * * **
1477171 AGCATGTGTCGATGGCGTTCGATGCAACCGCCTACACCTGGGGCC
1 -GCATGTGCCGATGGTGGTCGAGGCAATCGCCTTCACCAAGGGCC
* * *
1477216 ATCTTGTGCCGATGGTGGTCGAGGCAATCGCCTTCACCAAGGGTC
1 -GCATGTGCCGATGGTGGTCGAGGCAATCGCCTTCACCAAGGGCC
1477261 GCCATGTGCCGATGGTG
1 G-CATGTGCCGATGGTG
1477278 ATCAAGGTAA
Statistics
Matches: 81, Mismatches: 24, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGGCAATCGCCTTCACCAAGGGCC
Found at i:1477298 original size:90 final size:90
Alignment explanation
Indices: 1477130--1477329 Score: 213
Period size: 90 Copynumber: 2.2 Consensus size: 90
1477120 GGGCTCGGCA
* * * * *
1477130 TGTGCCGATGGTGGTCGAGGCAATCACCCTCACCATGGCCCAGCATGTGTCGATGGCGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCTCACCAAGGCCCAGCATGTGCCGATGGCGATCAAGG
* * * * *
1477195 CAACCGCCTACACCTGGGGCCATCT
66 CAACCCCCCACACCAGGGCCCAGCT
* * ** *
1477220 TGTGCCGATGGTGGTCGAGGCAATCGCCTTCACCAAGGGTC-GCCATGTGCCGATGGTGATCAAG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCTCACCAAGGCCCAG-CATGTGCCGATGGCGATCAAG
*
1477284 GTAACCCCCCACACCAGGGCCCAGCT
65 GCAACCCCCCACACCAGGGCCCAGCT
* **
1477310 TGTGCCAATGGCAGTCGAGG
1 TGTGCCGATGGTGGTCGAGG
1477330 GAAGTGCCCG
Statistics
Matches: 90, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
89 1 0.01
90 89 0.99
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAATCACCCTCACCAAGGCCCAGCATGTGCCGATGGCGATCAAGG
CAACCCCCCACACCAGGGCCCAGCT
Found at i:1483932 original size:148 final size:148
Alignment explanation
Indices: 1483664--1483934 Score: 346
Period size: 148 Copynumber: 1.8 Consensus size: 148
1483654 GCGGGACCAA
* * *
1483664 CAACACGCAGAGGGGGATCGGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCAGTCGGCTCAAC
1 CAACACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATCATGCCTCTCCAGTCGGCTCAAC
* * * *
1483729 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAT
66 GCCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGAT
1483794 CGACAGCGGGATCGACAG
131 CGACAGCGGGATCGACAG
* * * * * * **
1483812 CAACACGTAGAGGGGGACCGGGCCGATCCTCGGCTTACGCATCCTGCCTCTCCAGTCGGTTGAGT
1 CAACACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATCATGCCTCTCCAGTCGGCTCAAC
* * * * *
1483877 GCCCGCATGCAT-ATTTCGTGGGTTGAATTAGGCATATGAAGTTTATTCTCGGTCTAAG
66 GCCCGCACGC-TCATTTCGTGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAG
1483935 CCCCAATCGG
Statistics
Matches: 102, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
148 101 0.99
149 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (148 bp):
CAACACGCAGAGGGGGACCGGGCCGATCCCCAGCTTACGCATCATGCCTCTCCAGTCGGCTCAAC
GCCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGAT
CGACAGCGGGATCGACAG
Found at i:1484341 original size:45 final size:44
Alignment explanation
Indices: 1484241--1484431 Score: 138
Period size: 45 Copynumber: 4.2 Consensus size: 44
1484231 GGGCTCGGCA
* * * * *
1484241 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCACGGCCCAG-CA
1 TGTGCTGATGGTGTTCGAGGCAACCGCCAGCACCA-GGGCC-GTCT
* * *
1484286 TGT-TTCGATGGTGTTTGATGCAACCGCCAGCACCAGGGGCCGTCT
1 TGTGCT-GATGGTGTTCGAGGCAACCGCCAGCACCA-GGGCCGTCT
* * * *
1484331 TGTGCTGATGGT-TGTCGAGGCAATCGACAGCACCAAGGGCCGGCA
1 TGTGCTGATGGTGT-TCGAGGCAACCGCCAGCACC-AGGGCCGTCT
* * * *
1484376 TGTGCCGATGGTGATCGAGGCAACTGCCTGCACCAGGGCC-TAGCT
1 TGTGCTGATGGTGTTCGAGGCAACCGCCAGCACCAGGGCCGT--CT
1484421 TGTGCTGATGG
1 TGTGCTGATGG
1484432 CGGTCAAGGC
Statistics
Matches: 113, Mismatches: 25, Indels: 16
0.73 0.16 0.10
Matches are distributed among these distances:
44 8 0.07
45 103 0.91
46 2 0.02
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (44 bp):
TGTGCTGATGGTGTTCGAGGCAACCGCCAGCACCAGGGCCGTCT
Found at i:1484399 original size:90 final size:89
Alignment explanation
Indices: 1484241--1484443 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 89
1484231 GGGCTCGGCA
* * * * ** * * *
1484241 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCACGGCCCAGCATGTTTCGATGGTGTTTGATG
1 TGTGCTGATGGTGGTCGAGGCAACCGACAGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
1484306 CAACCGCCAGCACCAGGGGCCGT-CT
66 CAACCGCCAGCACCA-GGGCC-TACT
* * * *
1484331 TGTGCTGATGGTTGTCGAGGCAATCGACAGCACCAAGGGCCGGCATGTGCCGATGGTGATCGAGG
1 TGTGCTGATGGTGGTCGAGGCAACCGACAGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
* *
1484396 CAACTGCCTGCACCAGGGCCTAGCT
66 CAACCGCCAGCACCAGGGCCTA-CT
* *
1484421 TGTGCTGATGGCGGTCAAGGCAA
1 TGTGCTGATGGTGGTCGAGGCAA
1484444 GTGCCTATAC
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
88 1 0.01
89 5 0.05
90 87 0.94
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.20
Consensus pattern (89 bp):
TGTGCTGATGGTGGTCGAGGCAACCGACAGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
CAACCGCCAGCACCAGGGCCTACT
Found at i:1485424 original size:26 final size:26
Alignment explanation
Indices: 1485386--1485438 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1485376 GTTGACTTAG
*
1485386 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1485412 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1485438 G
1 G
1485439 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1485784 original size:159 final size:159
Alignment explanation
Indices: 1485497--1485916 Score: 563
Period size: 159 Copynumber: 2.6 Consensus size: 159
1485487 CAGCATGCAG
* * * * * **
1485497 GGGGGACCGAGCCAATGCCCAGCTTACG-ATTCTGCCTCTCCGGTTGGCTGAGTGCCCGCACGCT
1 GGGGGACCGAGCCGATACCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACGCT
* * * *
1485561 CATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTTCATGTCTAAGCCCTAGCCGAACCGAGGG
66 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGG
1485626 CTATGGCAGCAGGACCAGCAGCACACAGA
131 CTATGGCAGCAGGACCAGCAGCACACAGA
* * * *
1485655 GGGGGACCGAACCGATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGTACGCT
1 GGGGGACCGAGCCGATACCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACGCT
* *
1485720 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGATCGAGGG
66 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGG
* * ** * * * *
1485785 TTGTGGCAGTGGGACCGGTAGCACGCATA
131 CTATGGCAGCAGGACCAGCAGCACACAGA
* * *
1485814 GGGGGATCGAGCGGATACCCGGCTTGCGCATTATGCCTCTCTGACTGGCTGAGTGCCCGCACGCT
1 GGGGGACCGAGCCGATACCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACGCT
* *
1485879 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
66 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC
1485917 CAACCTAAGC
Statistics
Matches: 228, Mismatches: 33, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
158 23 0.10
159 205 0.90
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.23
Consensus pattern (159 bp):
GGGGGACCGAGCCGATACCCGGCTTGCGCATTATGCCTCTCCGACTGGCTGAGTGCCCGCACGCT
CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGGG
CTATGGCAGCAGGACCAGCAGCACACAGA
Found at i:1485942 original size:26 final size:26
Alignment explanation
Indices: 1485899--1485977 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
1485889 GTTGACTTAG
*
1485899 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
* * *
1485925 GCGTATAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
*
1485951 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAACCTAA
1485977 G
1 G
1485978 ATCGGATCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAACCTAA
Found at i:1486575 original size:45 final size:45
Alignment explanation
Indices: 1486473--1486588 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 45
1486463 CCACTGCTCG
* * * **
1486473 GCATGTGTCGATGGTGTTTGACACAATCGCCCGCACCAAGGGCCA
1 GCATATGTCGATGGTGATCGAGGCAATCGCCCGCACCAAGGGCCA
* * * * * *
1486518 TCTTATGCCGATGGTGGTCGAGGCAATTGCCCGCAGCAAGGGCCA
1 GCATATGTCGATGGTGATCGAGGCAATCGCCCGCACCAAGGGCCA
*
1486563 GCATCTGTCGATGGTGATCGAGGCAA
1 GCATATGTCGATGGTGATCGAGGCAA
1486589 CCACCAGCAC
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.22, C:0.26, G:0.32, T:0.21
Consensus pattern (45 bp):
GCATATGTCGATGGTGATCGAGGCAATCGCCCGCACCAAGGGCCA
Found at i:1491312 original size:45 final size:45
Alignment explanation
Indices: 1491198--1491429 Score: 202
Period size: 45 Copynumber: 5.2 Consensus size: 45
1491188 GTGCCAATCA
* * * *
1491198 TGGTAGAGGTAATCGCCCGTACCACGGCCCAGCATGTGCCGATGG
1 TGGTCGAGGTAATCGCCCGTACCAAGGGCCAGCTTGTGCCGATGG
* * * * ***
1491243 TGTTCGATGG-AACCGCCTGCACCAAGGGCTTTCTTGTGCCGATGG
1 TGGTCGA-GGTAATCGCCCGTACCAAGGGCCAGCTTGTGCCGATGG
* * *
1491288 TGGTTGAGGTAATCGCCCGTACCAAGGGCCGGCATGTGCCGATGG
1 TGGTCGAGGTAATCGCCCGTACCAAGGGCCAGCTTGTGCCGATGG
* * * * *
1491333 TGATCAAGGCAATCGCCCGCACC-AGGGCCCAGCTTGTGCCAATGG
1 TGGTCGAGGTAATCGCCCGTACCAAGGG-CCAGCTTGTGCCGATGG
* * *
1491378 CGGTCGAGGTAAGT-GCCCATACCAAAGGG-CAGCTTGTGCCGATGA
1 TGGTCGAGGTAA-TCGCCCGTACC-AAGGGCCAGCTTGTGCCGATGG
1491423 TGGTCGA
1 TGGTCGA
1491430 TGCATGTGCC
Statistics
Matches: 144, Mismatches: 37, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
44 6 0.04
45 131 0.91
46 3 0.02
47 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.33, T:0.20
Consensus pattern (45 bp):
TGGTCGAGGTAATCGCCCGTACCAAGGGCCAGCTTGTGCCGATGG
Found at i:1491355 original size:90 final size:90
Alignment explanation
Indices: 1491173--1491421 Score: 245
Period size: 90 Copynumber: 2.8 Consensus size: 90
1491163 TCTGGGGCCG
* * * ** * *
1491173 ACCAGGGCACGGCATGTGCCAATCATGGTAGAGGTAATCGCCCGTACCACGGCCCAGCATGTGCC
1 ACCAGGGCCCAGCTTGTGCCAATGGTGGTAGAGGTAATCGCCCGTACCAAGGGCCAGCATGTGCC
* * *
1491238 GATGGTGTTCGATGGAACCGCCTGC
66 GATGGTGATCGAAGGAACCGCCCGC
*** * * *
1491263 ACCAAGGG-CTTTCTTGTGCCGATGGTGGTTGAGGTAATCGCCCGTACCAAGGGCCGGCATGTGC
1 ACC-AGGGCCCAGCTTGTGCCAATGGTGGTAGAGGTAATCGCCCGTACCAAGGGCCAGCATGTGC
*
1491327 CGATGGTGATC-AAGGCAATCGCCCGC
65 CGATGGTGATCGAAGG-AACCGCCCGC
* * * *
1491353 ACCAGGGCCCAGCTTGTGCCAATGGCGGTCGAGGTAAGT-GCCCATACCAAAGGG-CAGCTTGTG
1 ACCAGGGCCCAGCTTGTGCCAATGGTGGTAGAGGTAA-TCGCCCGTACC-AAGGGCCAGCATGTG
1491416 CCGATG
64 CCGATG
1491422 ATGGTCGATG
Statistics
Matches: 129, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
89 7 0.05
90 112 0.87
91 10 0.08
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (90 bp):
ACCAGGGCCCAGCTTGTGCCAATGGTGGTAGAGGTAATCGCCCGTACCAAGGGCCAGCATGTGCC
GATGGTGATCGAAGGAACCGCCCGC
Found at i:1492523 original size:196 final size:196
Alignment explanation
Indices: 1492200--1492584 Score: 515
Period size: 196 Copynumber: 2.0 Consensus size: 196
1492190 GATCAAACCA
*
1492200 GACCGAGGGTTGCGACAGTAGGACCAGCAGCAGGATCAGCAGCATGCAGAGGGGATCAGGCCGAT
1 GACCGAGGGTTGCGACAGTAGCACCAGCAGCAGGATCAGCAGCATGCAGAGGGGATCAGGCCGAT
* * * * *
1492265 CCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGGC
66 CCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGC
* * * *
1492330 TTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCTCAGTTTAAGATCGGATC
131 TTAAGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC
1492395 G
196 G
* * * * *
1492396 GACCGAGGGTTGGGACAGTAGCACCAGTAGTAGGATC-GATAGCATGCA-AGGGGGATC-GAGCT
1 GACCGAGGGTTGCGACAGTAGCACCAGCAGCAGGATCAG-CAGCATGCAGA-GGGGATCAG-GCC
* * * * * *
1492458 GATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGTGCCCGCATGTTTGTTTCATGGGTT
63 GATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTT
* *
1492523 GGCTTAATCATACGGAGTTCATCCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGAT
128 GGCTTAAGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTTCATTCCCAGTCTAAGAT
1492585 TAAACTGCAT
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
195 3 0.02
196 160 0.98
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.24
Consensus pattern (196 bp):
GACCGAGGGTTGCGACAGTAGCACCAGCAGCAGGATCAGCAGCATGCAGAGGGGATCAGGCCGAT
CCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTGGC
TTAAGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATC
G
Found at i:1492561 original size:26 final size:26
Alignment explanation
Indices: 1492531--1492582 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1492521 TTGGCTTAAT
1492531 CATACGGAGTTCATCCCCAGTATAAG
1 CATACGGAGTTCATCCCCAGTATAAG
* *
1492557 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTATAAG
1492583 ATTAAACTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTATAAG
Found at i:1492629 original size:196 final size:197
Alignment explanation
Indices: 1492185--1492659 Score: 506
Period size: 196 Copynumber: 2.4 Consensus size: 197
1492175 GTGCTCGCAA
*
1492185 TCTAAGATCAAACCAG-ACCGAGGGTTGCGACAGT---AGGACCAGCAGCAGGATC-AGCAGCAT
1 TCTAAGATCAAATC-GCACCGAGGGTTG-GACAGTAGCAGGACCAGCAGCAGGATCGA-CAGCAT
* * * *
1492245 GCAGAGGGGATC-AGGCCGATCCCTGGCTTGCGCATTCTACCTCTCCGACCGGCTGAGTGCCTGC
63 GCAG-GGGGATCGA-GCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGC
* * *
1492309 ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCA
126 ACGCTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTTCA
*
1492374 TTCTCAG
191 TTCCCAG
* ** * * * *
1492381 TTTAAGATCGGATCGGACCGAGGGTTGGGACAGTAGC---ACCAGTAGTAGGATCGATAGCATGC
1 TCTAAGATCAAATCGCACCGAGGGTT-GGACAGTAGCAGGACCAGCAGCAGGATCGACAGCATGC
* * * * *
1492443 AAGGGGGATCGAGCTGATCCCCGGCTTACGCATTCTGCCTCTCTGGCCGACTGAGTGCCCGCATG
65 -AGGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACG
* * * *
1492508 TTTGTTTCATGGGTTGGCTTAATCATACGGAGTTCATCCCCAGTATAAGCATACGGAGTTCATTC
129 CTCGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTTCATTC
1492573 CCAG
194 CCAG
* * * *
1492577 TCTAAGATTAAA-CTGCATCGAGGGTT-G-CAGTAGCAGGACCAGCAACAGGATCGACAGCACGC
1 TCTAAGATCAAATC-GCACCGAGGGTTGGACAGTAGCAGGACCAGCAGCAGGATCGACAGCATGC
*
1492639 AGGAAGGGATCGAGTCGATCC
65 AGG--GGGATCGAGCCGATCC
1492660 TCAGGTTATG
Statistics
Matches: 228, Mismatches: 37, Indels: 27
0.78 0.13 0.09
Matches are distributed among these distances:
193 7 0.03
194 1 0.00
195 5 0.02
196 196 0.86
197 19 0.08
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.22
Consensus pattern (197 bp):
TCTAAGATCAAATCGCACCGAGGGTTGGACAGTAGCAGGACCAGCAGCAGGATCGACAGCATGCA
GGGGGATCGAGCCGATCCCCGGCTTACGCATTCTACCTCTCCGACCGACTGAGTGCCCGCACGCT
CGTTTCATGGGTTGGCTTAAGCATACGGAGTTCATCCCCAGTATAAGCATACAGAGTTCATTCCC
AG
Found at i:1494068 original size:26 final size:26
Alignment explanation
Indices: 1494032--1494084 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1494022 GTTGACTTAG
*
1494032 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
* *
1494058 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACAAAGTTCATCCCCAATCTAA
1494084 G
1 G
1494085 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAATCTAA
Found at i:1495406 original size:26 final size:26
Alignment explanation
Indices: 1495377--1495429 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1495367 GTTGACTTAG
*
1495377 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1495403 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1495429 G
1 G
1495430 ATGGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1495763 original size:26 final size:26
Alignment explanation
Indices: 1495733--1495785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1495723 GTTGACTTAG
*
1495733 GCATACGAATTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
1495759 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1495785 G
1 G
1495786 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1495875 original size:518 final size:518
Alignment explanation
Indices: 1494889--1495906 Score: 1317
Period size: 518 Copynumber: 2.0 Consensus size: 518
1494879 ACTTAGGCAA
*
1494889 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGACCAGCAGCAG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAGGACCAGCAGCAG
* * * *
1494954 GATCAGAAGCACATCGGGGGGGACCAGGTCGATCCCCGGCTTGTGCATTCTACCTCTCCTACCGG
66 GATCAGAAGCACATCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGA
* *
1495019 TTGAGCCCCCACACACTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
131 CTGAGCCCCCACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
*** * * ** * * * *
1495084 CCCAGTTGGACTGAGGGTTATGGCAGCGGGACCGGTAGCAGGTAGAGGGGGACCGGGCTGATCCT
196 CCCAGCCAGACCGAGGGTTATGGCAGCGCGACCGACAGCACGCAAAAGGGGACCGGGCTGATCCT
* * ** * *
1495149 CGGCTTATGCATTATTCCTCTCCGACCTACACAGTGCCAGCACACTCGTTTCGTGGGTTGACTTA
261 CAGCTTATGCATTATGCCTCTCCGACCTACACAACGCCAGCACACTCATTTCGCGGGTTGACTTA
* * * * * * *
1495214 GGCATACGGAGTTCATTCGCAGTCTAAGCATATAAAGTTCATTCCCAGTCTAAGATTGGACCGGT
326 GGCATACGAAGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAATCTAAGATCGGACCGGC
* * * * **
1495279 AGCAACATGCAGAGGGGGATCGGACCGATCCTCGGCTTGCACATCCTGCCTCTCCGATCGGCTGA
391 AGCAACACGCAGAGGGAGATCGGACCGATCCTCAGCTTGCACATCCTGCCTCTCCGACCAACTGA
*
1495344 GCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCAT
456 GCGCTCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCAT
** * * *
1495407 ACGGAGTTCATTCCCAGTCTAAGATGGGATCAGATCGAGGGTTGCAGTAGCAGGACCAGCAGCAG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAGGACCAGCAGCAG
* * * * *
1495472 GATC-GACAGCACGTCAGGGGGGACCGGGTCGATCCCCGGTTTGCGCATTCTACCTCTTCGATCG
66 GATCAGA-AGCACATCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCG
* * * * *
1495536 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAG
130 ACTGAGCCCCCACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * *
1495601 CCCCAGCCAGACCGATGGTTGTGGCAGCGCGACCGACAGCACGCAAAAGGGGATCGGGCTGATCC
195 CCCCAGCCAGACCGAGGGTTATGGCAGCGCGACCGACAGCACGCAAAAGGGGACCGGGCTGATCC
* * * * *
1495666 TCAGCTTGTGCATTATGCCTCTCTGACC-AGCTCAACGCCCGCACATTCATTTCGCGGGTTGACT
260 TCAGCTTATGCATTATGCCTCTCCGACCTA-CACAACGCCAGCACACTCATTTCGCGGGTTGACT
* ** **
1495730 TAGGCATACGAATTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATTG
324 TAGGCATACGAAGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAATCTAAGATCGGACCG
* * * *
1495795 GCAGCAGCACGCAGAGTGAGA-CTGGGCCGATCCTCAGCTTGCACATCCTGCCTTTCC-AGCCAA
389 GCAGCAACACGCAGAGGGAGATC-GGACCGATCCTCAGCTTGCACATCCTGCCTCTCCGA-CCAA
*
1495858 CTGAGTGACT-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
452 CTGAGCG-CTCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
1495907 CATTCTCGAT
Statistics
Matches: 424, Mismatches: 71, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
517 5 0.01
518 417 0.98
519 2 0.00
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (518 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGTAGCAGGACCAGCAGCAG
GATCAGAAGCACATCAGGGGGGACCAGGTCGATCCCCGGCTTGCGCATTCTACCTCTCCGACCGA
CTGAGCCCCCACACACTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
CCCAGCCAGACCGAGGGTTATGGCAGCGCGACCGACAGCACGCAAAAGGGGACCGGGCTGATCCT
CAGCTTATGCATTATGCCTCTCCGACCTACACAACGCCAGCACACTCATTTCGCGGGTTGACTTA
GGCATACGAAGTTCATTCCCAATCTAAGCATACAAAGTTCATTCCCAATCTAAGATCGGACCGGC
AGCAACACGCAGAGGGAGATCGGACCGATCCTCAGCTTGCACATCCTGCCTCTCCGACCAACTGA
GCGCTCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATCCCCAGTCTAAGCAT
Found at i:1496282 original size:46 final size:45
Alignment explanation
Indices: 1496224--1496380 Score: 127
Period size: 45 Copynumber: 3.5 Consensus size: 45
1496214 TCGAGGCTCG
* * * * *
1496224 GCATGTGCCGATGGTGGTCGAGAGAGACCGCCTGTACCATGGCCTA
1 GCATGTGCCGATGGTGGTCGAGACA-ACAGCCCGCACCAGGGCCTA
* * *
1496270 GCATGTGTCGATGGTGTTCGATACAACAGCCCGCACCAGGGCCTA
1 GCATGTGCCGATGGTGGTCGAGACAACAGCCCGCACCAGGGCCTA
* * * ** * * *
1496315 GCTTGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGAC-A
1 GCATGTGCCGATGGTGGTCGAGACAACAGCCCGCACC-AGGGCCTA
* *
1496360 GCCTGTGCCGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
1496381 TGCATGTGCC
Statistics
Matches: 88, Mismatches: 22, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
45 63 0.72
46 25 0.28
ACGTcount: A:0.20, C:0.27, G:0.34, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGACAACAGCCCGCACCAGGGCCTA
Found at i:1496327 original size:45 final size:46
Alignment explanation
Indices: 1496224--1496336 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 46
1496214 TCGAGGCTCG
* * * * *
1496224 GCATGTGCCGATGGTGGTCGAGAGAGACCGCCTGTACCATGGCCTA
1 GCATGTGCCGATGGTGGTCGAGACAGACAGCCCGCACCAGGGCCTA
* * *
1496270 GCATGTGTCGATGGTGTTCGATACA-ACAGCCCGCACCAGGGCCTA
1 GCATGTGCCGATGGTGGTCGAGACAGACAGCCCGCACCAGGGCCTA
* *
1496315 GCTTGTGCCGATGGCGGTCGAG
1 GCATGTGCCGATGGTGGTCGAG
1496337 GCAAGTGCCC
Statistics
Matches: 54, Mismatches: 13, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
45 33 0.61
46 21 0.39
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.20
Consensus pattern (46 bp):
GCATGTGCCGATGGTGGTCGAGACAGACAGCCCGCACCAGGGCCTA
Found at i:1496585 original size:25 final size:25
Alignment explanation
Indices: 1496543--1496590 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
1496533 CTTAGGTTAC
* *
1496543 GGAGTTCATGGCCTGTCTAAGATAT
1 GGAGTTCATGCCCAGTCTAAGATAT
*
1496568 GGAGTTCATTCCCAGTCTAAGAT
1 GGAGTTCATGCCCAGTCTAAGAT
1496591 CGGACCAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (25 bp):
GGAGTTCATGCCCAGTCTAAGATAT
Found at i:1497069 original size:45 final size:45
Alignment explanation
Indices: 1497018--1497222 Score: 200
Period size: 45 Copynumber: 4.6 Consensus size: 45
1497008 CCGGGGCTCG
* * * *
1497018 GCATGTGCCGATGGTGGTCGAGGCAACCGCCTACACCATGACCCA
1 GCATGTGCCGATGGTGGTTGAGGCAACCGCCCACACCAAGGCCCA
* * * * *
1497063 GCATGTGTCGATGG-CGTTCAATGCAACCGCCCACACCAAGGGCCA
1 GCATGTGCCGATGGTGGTT-GAGGCAACCGCCCACACCAAGGCCCA
* * * * *
1497108 TCTTGTGCCAATGGTGGTTGAGGCAATCGCCCACACCAA-GCTC-
1 GCATGTGCCGATGGTGGTTGAGGCAACCGCCCACACCAAGGCCCA
* * * *
1497151 GACATGTGCCGATGGTGATTAAGGCAACCGCCCCCACCAGGGCCCA
1 G-CATGTGCCGATGGTGGTTGAGGCAACCGCCCACACCAAGGCCCA
*
1497197 GCTTGTGCCGATGGTGGTTGAGGCAA
1 GCATGTGCCGATGGTGGTTGAGGCAA
1497223 GTGCCCGTAC
Statistics
Matches: 124, Mismatches: 31, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
44 35 0.28
45 85 0.69
46 4 0.03
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTTGAGGCAACCGCCCACACCAAGGCCCA
Found at i:1497189 original size:89 final size:90
Alignment explanation
Indices: 1497021--1497222 Score: 250
Period size: 89 Copynumber: 2.3 Consensus size: 90
1497011 GGGCTCGGCA
* * * * *
1497021 TGTGCCGATGGTGGTCGAGGCAACCGCCTACACCATGACCCAGCATGTGTCGATGGCGTTCAATG
1 TGTGCCGATGGTGGTTGAGGCAACCGCCCACACCAAGACCCAGCATGTGCCGATGGCGTTCAAGG
*
1497086 CAACCGCCCACACCAAGGG-CCATCT
66 CAACCGCCCACACC-AGGGCCCAGCT
* * * *
1497111 TGTGCCAATGGTGGTTGAGGCAATCGCCCACACCAAG-CTC-GACATGTGCCGATGGTGATT-AA
1 TGTGCCGATGGTGGTTGAGGCAACCGCCCACACCAAGACCCAG-CATGTGCCGATGGCG-TTCAA
*
1497173 GGCAACCGCCCCCACCAGGGCCCAGCT
64 GGCAACCGCCCACACCAGGGCCCAGCT
1497200 TGTGCCGATGGTGGTTGAGGCAA
1 TGTGCCGATGGTGGTTGAGGCAA
1497223 GTGCCCGTAC
Statistics
Matches: 97, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
88 5 0.05
89 58 0.60
90 34 0.35
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGGTGGTTGAGGCAACCGCCCACACCAAGACCCAGCATGTGCCGATGGCGTTCAAGG
CAACCGCCCACACCAGGGCCCAGCT
Found at i:1498202 original size:26 final size:26
Alignment explanation
Indices: 1498173--1498251 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
1498163 GTTGACTTAG
* * *
1498173 GCATACGGAGTTTATCCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1498199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1498225 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1498251 G
1 G
1498252 ATCGGACCGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1498845 original size:45 final size:46
Alignment explanation
Indices: 1498695--1498908 Score: 143
Period size: 45 Copynumber: 4.7 Consensus size: 46
1498685 AGGGTCGATC
* ***
1498695 AGGGCCCGA-CATGTGCCGATGGTGGCCGAGGCAATTGCCCACACCA
1 AGGG-CCGAGCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCA
* * * * * * * *
1498741 TA--GCCCAGCATGTGTCGACGGTGTTTGATGCAACCACCCGCACTA
1 -AGGGCCGAGCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCA
* * * * *
1498786 GGGGCC-ATCTTGTGCCGATGATGGTCGAGGCAATCACCCACACCA
1 AGGGCCGAGCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCA
* * *
1498831 AGGGCCGA-CATGTGCTGATGGTGATCGAGGCAACCGCCCACACC-
1 AGGGCCGAGCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCA
* * * **
1498875 AGGGCCCAGCTTGTGCTGATGGCAGTCGAGGCAA
1 AGGGCCGAGCATGTGCCGATGGTGGTCGAGGCAA
1498909 GTGCCCATAC
Statistics
Matches: 126, Mismatches: 36, Indels: 12
0.72 0.21 0.07
Matches are distributed among these distances:
44 10 0.08
45 111 0.88
46 4 0.03
47 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.17
Consensus pattern (46 bp):
AGGGCCGAGCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCA
Found at i:1498915 original size:45 final size:42
Alignment explanation
Indices: 1498809--1498920 Score: 107
Period size: 45 Copynumber: 2.5 Consensus size: 42
1498799 GCCGATGATG
* * *
1498809 GTCGAGGCAATCACCCACACCAAGGGCCGACATGTGCTGATGGT
1 GTCGAGGCAAT-GCCCACACC-AGGGCCCACATGTGCTGATGGA
* *
1498853 GATCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCTGATGGCA
1 G-TCGAGGCAA-TGCCCACACCAGGGCCCA-CATGTGCTGATGG-A
*
1498899 GTCGAGGCAAGTGCCCATACCA
1 GTCGAGGCAA-TGCCCACACCA
1498921 AAGGGCAGCC
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
44 8 0.14
45 47 0.84
46 1 0.02
ACGTcount: A:0.24, C:0.32, G:0.29, T:0.14
Consensus pattern (42 bp):
GTCGAGGCAATGCCCACACCAGGGCCCACATGTGCTGATGGA
Found at i:1500089 original size:21 final size:20
Alignment explanation
Indices: 1500065--1500113 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
1500055 TTGTGACAGT
*
1500065 GGGATCGGCAGCACACAGAGG
1 GGGATCGACAGCACACAGA-G
* **
1500086 GGGACCGACAGCATGCAGAG
1 GGGATCGACAGCACACAGAG
1500106 GGGATCGA
1 GGGATCGA
1500114 TCCTCGGCTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.29, C:0.22, G:0.43, T:0.06
Consensus pattern (20 bp):
GGGATCGACAGCACACAGAG
Found at i:1500534 original size:26 final size:26
Alignment explanation
Indices: 1500504--1500556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1500494 GTTGACTTAG
1500504 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
** *
1500530 GCATACGGGGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
1500556 G
1 G
1500557 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:1502352 original size:26 final size:26
Alignment explanation
Indices: 1502316--1502368 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1502306 GTTGACTTAG
1502316 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1502342 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1502368 G
1 G
1502369 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1502404 original size:170 final size:170
Alignment explanation
Indices: 1502228--1502541 Score: 452
Period size: 170 Copynumber: 1.8 Consensus size: 170
1502218 TGGCAGCACA
* * * * *
1502228 CAGAGGGGACCGGGTCGATCCCTGGCTTGCGCATCGTGCCTCTCTGGAT-GGCT-GAGCGCCCGC
1 CAGAGGGGACCGAGTCGATCCCCGACTTGCGCATCCTGCCTCTCTGG-TCGGCTAG-GCGCCCAC
* * *
1502291 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
64 ACGCTCATTTCGTGGGTCGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
1502356 TTCCCAGTCTAAGATCAGATCGACAGCAGGATCGACAGCGTG
129 TTCCCAGTCTAAGATCAGATCGACAGCAGGATCGACAGCGTG
* * * * *
1502398 CAGAGGGGATCGAGTCGATCCCCGACTTGTGCTTCCTGCCTCTCTGGTCGGCTAGGTGCCTACAC
1 CAGAGGGGACCGAGTCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTAGGCGCCCACAC
* * *
1502463 GCTCGTTTTGTGGGTCGACTTAAGCATACTGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
66 GCTCATTTCGTGGGTCGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
1502528 CCCAGTCTAAGATC
131 CCCAGTCTAAGATC
1502542 GAACCAGACT
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
169 1 0.01
170 124 0.98
171 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (170 bp):
CAGAGGGGACCGAGTCGATCCCCGACTTGCGCATCCTGCCTCTCTGGTCGGCTAGGCGCCCACAC
GCTCATTTCGTGGGTCGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATT
CCCAGTCTAAGATCAGATCGACAGCAGGATCGACAGCGTG
Found at i:1502523 original size:26 final size:26
Alignment explanation
Indices: 1502483--1502538 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
1502473 TGGGTCGACT
1502483 TAAGCATACTGAGTTCATCCCCAGTC
1 TAAGCATACTGAGTTCATCCCCAGTC
*
1502509 TAAGCATAC-GAAGTTCATTCCCAGTC
1 TAAGCATACTG-AGTTCATCCCCAGTC
1502535 TAAG
1 TAAG
1502539 ATCGAACCAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACTGAGTTCATCCCCAGTC
Done.