Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 14 of 120
Found at i:1503420 original size:26 final size:26
Alignment explanation
Indices: 1503384--1503436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1503374 GTTGACTTAG
1503384 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1503410 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1503436 G
1 G
1503437 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1503706 original size:172 final size:172
Alignment explanation
Indices: 1503417--1503791 Score: 547
Period size: 172 Copynumber: 2.2 Consensus size: 172
1503407 TAAGCATATG
* * *
1503417 GAGTTCATTCCCAGTCTAAG-ATTGGATCGGATCGGACTGAGGGTTGTGATAGCAGGACCAACAG
1 GAGTTCATTCCCAGTCTAAGCA-T--AT-GGATCGGACCGAGGGTTGTGACAACAGGACCAACAG
* * **
1503481 CAAGATCGACAGCATGCAGGGGGGACCGGGTTGATCCCCGGCTTGTGCATTCTGCCTCTCTGGCC
62 CAAGATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCC
* * *
1503546 TGCTCAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGTATATA
127 TGCTCAGTGCCCGCACGCTCATTTCGTGGATTGACTTAGGCATACA
* *
1503592 GAGTTCA-TCCCTAGTCTAAGCATATGGATCGGACCGAGGGTTGTGACAACAGGACCAACAGTAG
1 GAGTTCATTCCC-AGTCTAAGCATATGGATCGGACCGAGGGTTGTGACAACAGGACCAACAGCAA
*
1503656 GATCGACAGCACGTAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCTGC
65 GATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCTGC
* * *
1503721 TCAGTGCCCGCACGCTCTTTTCGTGGATTGGCTTAGGCATACG
130 TCAGTGCCCGCACGCTCATTTCGTGGATTGACTTAGGCATACA
1503764 GAGTTCATTCCCAGTCTAAGCATATGGA
1 GAGTTCATTCCCAGTCTAAGCATATGGA
1503792 GTTCATTCCT
Statistics
Matches: 181, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
172 154 0.85
173 6 0.03
174 4 0.02
175 16 0.09
176 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (172 bp):
GAGTTCATTCCCAGTCTAAGCATATGGATCGGACCGAGGGTTGTGACAACAGGACCAACAGCAAG
ATCGACAGCACGCAGGGGGGACCGGGCTGATCCCCGGCTTGTGCATTCTGCCTCTCCAGCCTGCT
CAGTGCCCGCACGCTCATTTCGTGGATTGACTTAGGCATACA
Found at i:1503793 original size:26 final size:26
Alignment explanation
Indices: 1503757--1503835 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
1503747 ATTGGCTTAG
*
1503757 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
1503783 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
1503809 GTATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1503835 G
1 G
1503836 ATCAGACCGA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1504341 original size:45 final size:45
Alignment explanation
Indices: 1504266--1504468 Score: 210
Period size: 45 Copynumber: 4.5 Consensus size: 45
1504256 GGGCTCGACA
** * ** * * *
1504266 TGTGCCGATGGTGGTTGTCGAAACTACCCGCACCATGGCCCAGCA
1 TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCATCT
* * *
1504311 TGTGCCGATGGT-GTTCGATGCAACCGCCCGCACTAGGGGCCATCT
1 TGTGCCGATGGTGGTT-GAGGCAACCGCCCGCACCAGGGCCCATCT
* * *
1504356 TGTGCCGATGGTGGTTGAGGCAACTGCTCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCATCT
* * * * *
1504401 TCTGCTGATGGTGGTTGAGGCCACCGCCTGCACCAGGGCCCAACT
1 TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCATCT
*
1504446 TGTGCCGATGGCGGTTGAGGCAA
1 TGTGCCGATGGTGGTTGAGGCAA
1504469 GTGCCCTTAC
Statistics
Matches: 130, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
44 3 0.02
45 124 0.95
46 3 0.02
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (45 bp):
TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCATCT
Found at i:1505445 original size:26 final size:26
Alignment explanation
Indices: 1505409--1505461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1505399 GTTGACTTAG
1505409 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1505435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1505461 G
1 G
1505462 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1506239 original size:45 final size:44
Alignment explanation
Indices: 1506106--1506310 Score: 191
Period size: 45 Copynumber: 4.6 Consensus size: 44
1506096 CCGGGGCTCG
*
1506106 GCATGTGCCA-ATGGTGGTCGAGGCAATCGCCCGCACCACGGCCTA
1 GCATGTG-CAGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCC-A
* * * * * * *
1506151 GCATGTGCTGATGGTGTTTGATGCAACCGCTCGTACCAGGGGCCA
1 GCATGTGCAGATGGTGGTCGAGGCAATCGCCCGCACCA-GGGCCA
* *
1506196 TCTTGTG-ACGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCA
1 GCATGTGCA-GATGGTGGTCGAGGCAATCGCCCGCACC-AGGGCCA
* * * *
1506241 GCATGTGCAGATGGT-ATTGAGGCAAACGCCTGCACCAGGGCCCA
1 GCATGTGCAGATGGTGGTCGAGGCAATCGCCCGCACCAGGG-CCA
* *
1506285 GCTTGTGCCGATGGTGGTCGAGGCAA
1 GCATGTGCAGATGGTGGTCGAGGCAA
1506311 GTGCCTATAC
Statistics
Matches: 126, Mismatches: 27, Indels: 14
0.75 0.16 0.08
Matches are distributed among these distances:
43 4 0.03
44 34 0.27
45 82 0.65
46 6 0.05
ACGTcount: A:0.20, C:0.27, G:0.34, T:0.19
Consensus pattern (44 bp):
GCATGTGCAGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCA
Found at i:1506323 original size:89 final size:91
Alignment explanation
Indices: 1506109--1506310 Score: 277
Period size: 90 Copynumber: 2.3 Consensus size: 91
1506099 GGGCTCGGCA
* * * *
1506109 TGTGCCAATGGTGGTCGAGGCAATCGCCCGCACC-ACGGCCTAGCATGTGCTGATGGTGTTTGAT
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAACGGCCTAGCATGTGCAGATGGTGATTGAG
* * * *
1506173 GCAACCGCTCGTACCAGGGGCCATCT
66 GCAAACGCTCGCACCAGGGCCCAGCT
* *
1506199 TGTGACGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCC-AGCATGTGCAGATGGT-ATTGAG
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAACGGCCTAGCATGTGCAGATGGTGATTGAG
1506262 GCAAACGC-CTGCACCAGGGCCCAGCT
66 GCAAACGCTC-GCACCAGGGCCCAGCT
1506288 TGTGCCGATGGTGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1506311 GTGCCTATAC
Statistics
Matches: 99, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
88 1 0.01
89 46 0.46
90 47 0.47
91 5 0.05
ACGTcount: A:0.20, C:0.27, G:0.34, T:0.19
Consensus pattern (91 bp):
TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAACGGCCTAGCATGTGCAGATGGTGATTGAG
GCAAACGCTCGCACCAGGGCCCAGCT
Found at i:1508808 original size:9 final size:9
Alignment explanation
Indices: 1508794--1508818 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1508784 TCACCCTTGG
1508794 AGGTGCTAA
1 AGGTGCTAA
1508803 AGGTGCTAA
1 AGGTGCTAA
1508812 AGGTGCT
1 AGGTGCT
1508819 GAAGACCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.36, T:0.24
Consensus pattern (9 bp):
AGGTGCTAA
Found at i:1517911 original size:26 final size:26
Alignment explanation
Indices: 1517875--1517927 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1517865 GTTGGCTTAG
*
1517875 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATATCTAA
* *
1517901 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACAGAGTTCATTCCATATCTAA
1517927 G
1 G
1517928 TTCAAACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATATCTAA
Found at i:1518509 original size:45 final size:45
Alignment explanation
Indices: 1518378--1518522 Score: 139
Period size: 45 Copynumber: 3.2 Consensus size: 45
1518368 TGTGCCAATG
* * * * *
1518378 GTGGTTGAGGCAACCGCCCACACCATGGCCCAGCATGTGCCGATG
1 GTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTACCGATA
* * ** *
1518423 GTGTTCGATGCAACCGTTCACACCAAGGG-CCATCTTGTACCGATA
1 GTGGTCGAGGCAACCGCCCACACC-AGGGCCCAGCTTGTACCGATA
* * *
1518468 GTGGTCGAGGCAACCGCCCGCACCGGGGCCCAGCTTATACCGATA
1 GTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTACCGATA
* *
1518513 GCGATCGAGG
1 GTGGTCGAGG
1518523 TAAGTGCCCG
Statistics
Matches: 78, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
44 3 0.04
45 72 0.92
46 3 0.04
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (45 bp):
GTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTACCGATA
Found at i:1519326 original size:45 final size:45
Alignment explanation
Indices: 1519253--1519405 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
1519243 TCGACATGTA
* * * * * *
1519253 CCGATGGTGGTCGAGGCAATCACC-GCACCACGGCCCAGCATGTG
1 CCGATAGTGGTCAAGGCAACCGCCAGCACCAGGGCCCAGCTTGTG
* * * * * * * *
1519297 TCGATAGTGTTCGATGTAACCGCCTGCACCAGGGGCCATCTTGTG
1 CCGATAGTGGTCAAGGCAACCGCCAGCACCAGGGCCCAGCTTGTG
*
1519342 CCGATGGTGGTCAAGGCAACCGCCAGCACCAGGGCCCAGCTTGTG
1 CCGATAGTGGTCAAGGCAACCGCCAGCACCAGGGCCCAGCTTGTG
* * *
1519387 CCGATGGCGGTCGAGGCAA
1 CCGATAGTGGTCAAGGCAA
1519406 GTGCCCGTAC
Statistics
Matches: 86, Mismatches: 22, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
44 17 0.20
45 69 0.80
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
CCGATAGTGGTCAAGGCAACCGCCAGCACCAGGGCCCAGCTTGTG
Found at i:1519534 original size:26 final size:26
Alignment explanation
Indices: 1519505--1519557 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1519495 GTTGACTTAG
1519505 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
1519531 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1519557 G
1 G
1519558 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1521404 original size:26 final size:26
Alignment explanation
Indices: 1521374--1521426 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1521364 GTTGACTTAG
*
1521374 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1521400 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1521426 G
1 G
1521427 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1522200 original size:45 final size:45
Alignment explanation
Indices: 1522079--1522266 Score: 145
Period size: 45 Copynumber: 4.2 Consensus size: 45
1522069 GCTCGACATG
* * *
1522079 TGCCAATGGTGGTCGAGGCAACCGCCCGCACCACG-GCCCAGC--A
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCA-GAGGCCAGCTTA
* * ** *
1522122 TGTCCGGATGGTGTTCGATGCAA-TCGCTTGCACCAGAGGCCATCTTA
1 TG-CC-GATGGTGGTCGAGGCAACT-GCCCGCACCAGAGGCCAGCTTA
*
1522169 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCA-AGGCCCAGCTTG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGAGG-CCAGCTTA
* * * * *
1522214 TGCCGATGGCGGTCGAGGCAAGTGCCC-CTACCAAAGGGCAGCCTA
1 TGCCGATGGTGGTCGAGGCAACTGCCCGC-ACCAGAGGCCAGCTTA
*
1522259 TGTCGATG
1 TGCCGATG
1522267 ACGGTCGATG
Statistics
Matches: 115, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.02
44 7 0.06
45 97 0.84
46 6 0.05
47 3 0.03
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGAGGCCAGCTTA
Found at i:1522266 original size:90 final size:89
Alignment explanation
Indices: 1522079--1522266 Score: 200
Period size: 90 Copynumber: 2.1 Consensus size: 89
1522069 GCTCGACATG
* * * * *
1522079 TGCCAATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTCCGGATGGTGTTCGATGCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTCCGGATGGCGGTCGAGGCA
* * * * *
1522144 ATCGCTTGCACCAGAGGCCATCTTA
66 ATCCCCT-CACCAAAGGCCAGCCTA
* *
1522169 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCAGCTTGTGCC-GATGGCGGTCGAGGC
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGT-CCGGATGGCGGTCGAGGC
*
1522233 AAGTGCCCCT-ACCAAAGGGCAGCCTA
65 AA-T-CCCCTCACCAAAGGCCAGCCTA
*
1522259 TGTCGATG
1 TGCCGATG
1522267 ACGGTCGATG
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
90 75 0.93
91 3 0.04
92 3 0.04
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (89 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTCCGGATGGCGGTCGAGGCA
ATCCCCTCACCAAAGGCCAGCCTA
Found at i:1522659 original size:26 final size:26
Alignment explanation
Indices: 1522622--1522674 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1522612 GTTGACTTAG
1522622 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
1522648 GCATAT-GAAGTTCATTCCCAGTCTAA
1 GCATATAG-AGTTCATTCCCAGTCTAA
1522674 G
1 G
1522675 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:1524235 original size:26 final size:26
Alignment explanation
Indices: 1524196--1524248 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1524186 GTTGACTTAG
* *
1524196 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAATTCATTCCC-AGTCTAA
1524222 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1524248 G
1 G
1524249 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:1525094 original size:45 final size:45
Alignment explanation
Indices: 1525020--1525137 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 45
1525010 GATCGAGGCT
* * * * * * *
1525020 CAGCATGTGTCGATGGTGTTTGATGCAACCGCCCGCACCAGGGGC
1 CAGCTTGTGCCGATGGTGATTGAGGCAACCACCCACACCAGGGCC
* *
1525065 CATCTTGTGCCGATGGTGGTTGAGGCAACCACCCACACCAGGGCC
1 CAGCTTGTGCCGATGGTGATTGAGGCAACCACCCACACCAGGGCC
* *
1525110 CAGCTTATGCCGATGGTGATCGAGGCAA
1 CAGCTTGTGCCGATGGTGATTGAGGCAA
1525138 GTGCTCGTAC
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
CAGCTTGTGCCGATGGTGATTGAGGCAACCACCCACACCAGGGCC
Found at i:1525439 original size:26 final size:26
Alignment explanation
Indices: 1525400--1525452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1525390 GGTTACTTAG
* *
1525400 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAACTTCATTCCCAGTCTAA
*
1525426 GCATACAAACTTCATTCCTAGTCTAA
1 GCATACAAACTTCATTCCCAGTCTAA
1525452 G
1 G
1525453 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (26 bp):
GCATACAAACTTCATTCCCAGTCTAA
Found at i:1525994 original size:45 final size:45
Alignment explanation
Indices: 1525898--1526057 Score: 124
Period size: 45 Copynumber: 3.6 Consensus size: 45
1525888 CCGGGGCTCA
* *
1525898 CATGTGCCAATGGTGGTCGAGGCAACCGCCCGCACTACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
* * * * *
1525943 CATGTGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCATG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCA-G
* * * * * * * * *
1525989 -TTGTGCTGATGGTGATCAAGGTAACCACCTGCACTAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
* * * *
1526033 CCTGTGTCGATGGCGGTCAAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1526058 GTGCCCATAA
Statistics
Matches: 91, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
44 1 0.01
45 89 0.98
46 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
Found at i:1526118 original size:13 final size:13
Alignment explanation
Indices: 1526100--1526124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1526090 ATGGTCGATG
1526100 CATGTGCCATCAC
1 CATGTGCCATCAC
1526113 CATGTGCCATCA
1 CATGTGCCATCA
1526125 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1526507 original size:26 final size:26
Alignment explanation
Indices: 1526471--1526524 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
1526461 TGGGTTGACT
1526471 TAGGCATACGGAGTTCATTACC-AGTC
1 TAGGCATACGGAGTTCATT-CCTAGTC
1526497 TAGGCATACGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATTCCTAGTC
1526523 TA
1 TA
1526525 AGATCGTATC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCTAGTC
Found at i:1527066 original size:45 final size:45
Alignment explanation
Indices: 1526973--1527170 Score: 168
Period size: 45 Copynumber: 4.4 Consensus size: 45
1526963 CGACTTCTGT
* ** * * * * *
1526973 CGATGGTGGTCGAGGCAACCG-CTCATACCATGGCCCAACATGTAC
1 CGATGGTGTTCGAGGCAACCGAC-CGCACCAGGGGCCAGCTTGTGC
* * *
1527018 CGATGGTGTTCGATGCAACCGACCGCACCAGGGGCCATCTTGGGC
1 CGATGGTGTTCGAGGCAACCGACCGCACCAGGGGCCAGCTTGTGC
* * * * *
1527063 CGATGGTGGTCGAGGCAATC-ACCCGCACCAAGGGCCGGCATGTGC
1 CGATGGTGTTCGAGGCAACCGA-CCGCACCAGGGGCCAGCTTGTGC
* *
1527108 CGATGGTGATT-GAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGC
1 CGATGGTG-TTCGAGGCAACCGACCGCACCAGGGGCCAGCTTGTGC
* *
1527153 CGATGGCGGTCGAGGCAA
1 CGATGGTGTTCGAGGCAA
1527171 GTGCCCGTAC
Statistics
Matches: 121, Mismatches: 27, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
44 2 0.02
45 117 0.97
46 2 0.02
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.16
Consensus pattern (45 bp):
CGATGGTGTTCGAGGCAACCGACCGCACCAGGGGCCAGCTTGTGC
Found at i:1527177 original size:45 final size:43
Alignment explanation
Indices: 1527017--1527219 Score: 147
Period size: 45 Copynumber: 4.5 Consensus size: 43
1527007 CCAACATGTA
* * * * * *
1527017 CCGATGGTGTTCGATGCAACCGACCGCACCAGGGGCCATCTTGGG
1 CCGATGGTGGTCGAGGCAA-TGCCCGCACCA-GGGCCAGCTTGTG
* * *
1527062 CCGATGGTGGTCGAGGCAATCACCCGCACCAAGGGCCGGCATGTG
1 CCGATGGTGGTCGAGGCAAT-GCCCGCACC-AGGGCCAGCTTGTG
* * *
1527107 CCGATGGTGATTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAA-TGCCCGCACCAGGG-CCAGCTTGTG
* * * **
1527152 CCGATGGCGGTCGAGGCAAGTGCCCGTACCAGAGGGCAGCCCGT-
1 CCGATGGTGGTCGAGGCAA-TGCCCGCACCAG-GGCCAGCTTGTG
* *
1527196 CCGATGATGGTCGATGCAAGTGCC
1 CCGATGGTGGTCGAGGCAA-TGCC
1527220 ATAACCATGC
Statistics
Matches: 126, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
44 25 0.20
45 98 0.78
46 3 0.02
ACGTcount: A:0.19, C:0.31, G:0.35, T:0.15
Consensus pattern (43 bp):
CCGATGGTGGTCGAGGCAATGCCCGCACCAGGGCCAGCTTGTG
Found at i:1530358 original size:26 final size:26
Alignment explanation
Indices: 1530328--1530380 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1530318 GTTGACTTAG
*
1530328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
* *
1530354 GCATATGGAGTACATTCCTAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
1530380 G
1 G
1530381 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:1530892 original size:45 final size:45
Alignment explanation
Indices: 1530820--1530947 Score: 159
Period size: 45 Copynumber: 2.8 Consensus size: 45
1530810 CCAGGGCTTG
* *
1530820 GCATGTGTCGATGGTGGTCGAGCCAACCGCCCGCACCATGGCCCA
1 GCATGTGTCGATGGTGGTCGAGACAACCGCCCGCACCAGGGCCCA
* * *
1530865 GCATGTGTCGATGGTGTTCGATG-CAACCACCCGCACCAGGGGCCA
1 GCATGTGTCGATGGTGGTCGA-GACAACCGCCCGCACCAGGGCCCA
* * * *
1530910 TCTTGTGTCGATGGTGGTCGAGACAATCGCCCGTACCA
1 GCATGTGTCGATGGTGGTCGAGACAACCGCCCGCACCA
1530948 AAGGTTGGAA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
44 1 0.01
45 69 0.97
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
GCATGTGTCGATGGTGGTCGAGACAACCGCCCGCACCAGGGCCCA
Found at i:1530967 original size:90 final size:91
Alignment explanation
Indices: 1530823--1531041 Score: 221
Period size: 90 Copynumber: 2.4 Consensus size: 91
1530813 GGGCTTGGCA
* * * * * * * *
1530823 TGTGTCGATGGTGGTCGAGCCAACCGCCCGCACC-ATGGCCCAGCATGTGTCGATGGTGTTCGAT
1 TGTGTCGATGGTGGTCGAGACAATCGCCCGTACCAAAGGCCCAGAATGTGCCGATGGTGATCGAG
* *
1530887 GCAACCACCCGCACCAGGGGCC-ATCT
66 GCAACCACCCGCACCA-AGGCCTAGCT
***
1530913 TGTGTCGATGGTGGTCGAGACAATCGCCCGTACCAAAGG-TTGGAATGTGCCGATGGTGATCGAG
1 TGTGTCGATGGTGGTCGAGACAATCGCCCGTACCAAAGGCCCAGAATGTGCCGATGGTGATCGAG
* *
1530977 GCAACCGCCCGTACCAAGGCCTAGCT
66 GCAACCACCCGCACCAAGGCCTAGCT
* * * *
1531003 TGTGCCGATGGCGATCGAGGCAAGT-GCCCGTACCAAAGG
1 TGTGTCGATGGTGGTCGAGACAA-TCGCCCGTACCAAAGG
1531042 GCAGCCTGTG
Statistics
Matches: 107, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
89 4 0.04
90 99 0.93
91 4 0.04
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.19
Consensus pattern (91 bp):
TGTGTCGATGGTGGTCGAGACAATCGCCCGTACCAAAGGCCCAGAATGTGCCGATGGTGATCGAG
GCAACCACCCGCACCAAGGCCTAGCT
Found at i:1531071 original size:45 final size:45
Alignment explanation
Indices: 1530823--1531071 Score: 153
Period size: 45 Copynumber: 5.5 Consensus size: 45
1530813 GGGCTTGGCA
* * * * * * * *
1530823 TGTGTCGATGGTGGTCGAGCCAACCGCCCGCACCATGGCCCAGCA
1 TGTGCCGATGGTGATCGAGGCAAGCGCCCGTACCAAGGCCTAGCC
* * * * * * * * *
1530868 TGTGTCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCC-ATCT
1 TGTGCCGATGGTGATCGAGGCAAGCGCCCGTACCA-AGGCCTAGCC
* * * * * * **
1530913 TGTGTCGATGGTGGTCGAGACAATCGCCCGTACCAAAGG-TTGGAA
1 TGTGCCGATGGTGATCGAGGCAAGCGCCCGTACC-AAGGCCTAGCC
* *
1530958 TGTGCCGATGGTGATCGAGGCAACCGCCCGTACCAAGGCCTAGCT
1 TGTGCCGATGGTGATCGAGGCAAGCGCCCGTACCAAGGCCTAGCC
* * *
1531003 TGTGCCGATGGCGATCGAGGCAAGTGCCCGTACCAAAGGGC-AGCC
1 TGTGCCGATGGTGATCGAGGCAAGCGCCCGTACC-AAGGCCTAGCC
* * *
1531048 TGTGCCGATGATGGTCGATGCAAG
1 TGTGCCGATGGTGATCGAGGCAAG
1531072 GGCCATCACC
Statistics
Matches: 163, Mismatches: 36, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
44 4 0.02
45 149 0.91
46 10 0.06
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGATCGAGGCAAGCGCCCGTACCAAGGCCTAGCC
Found at i:1535759 original size:15 final size:15
Alignment explanation
Indices: 1535739--1535768 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1535729 CTCACCTTCT
*
1535739 GATCCGTAACCATCA
1 GATCCGTAAACATCA
1535754 GATCCGTAAACATCA
1 GATCCGTAAACATCA
1535769 AGCCCTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.30, G:0.13, T:0.20
Consensus pattern (15 bp):
GATCCGTAAACATCA
Found at i:1537921 original size:26 final size:26
Alignment explanation
Indices: 1537871--1537923 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1537861 GTTGACTTAG
*
1537871 GCATACGGAATTCATCCCTAGTCTAA
1 GCATACGGAATTCATCCCTAATCTAA
*
1537897 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAATTCA-TCCCTAATCTAA
1537923 G
1 G
1537924 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATCCCTAATCTAA
Found at i:1539903 original size:26 final size:26
Alignment explanation
Indices: 1539853--1539905 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1539843 GTTGACATAG
* * *
1539853 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCAAATCTAA
*
1539879 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGGAGTTCATCCCAAATCTAA
1539905 G
1 G
1539906 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCAAATCTAA
Found at i:1540261 original size:26 final size:26
Alignment explanation
Indices: 1540211--1540261 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1540201 CGACTTAGGA
* *
1540211 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACCGAGTTCATTCCCAATCTAAGC
* *
1540237 ATACCGAGTTCTTTCCCAATTTAAG
1 ATACCGAGTTCATTCCCAATCTAAG
1540262 ATCGGTCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
ATACCGAGTTCATTCCCAATCTAAGC
Found at i:1540587 original size:45 final size:45
Alignment explanation
Indices: 1540538--1540745 Score: 157
Period size: 45 Copynumber: 4.6 Consensus size: 45
1540528 GATCGAGGCT
* * * *
1540538 CAGCATATTCCGATGGTGGTCAAGGCAACCGCCCGCACCATGACC
1 CAGCATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACC
* * * ** **
1540583 CAGCATGTGCCGATGGTGTTCGATGCAACCGCCTACACCAGGGGC
1 CAGCATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACC
* * * *
1540628 CATCTTGTACCGATGGTGGTCGAGGCAATCGCCCGCACCAAGG-GC
1 CAGCATGTACCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGACC
** * * * * * *
1540673 TGGCATGTGCCAATGGTGATCGAGGCAACCACCCACACCAGGGCC
1 CAGCATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACC
* * * *
1540718 CAGCTTGTGCAGATGGCGGTCGAGGCAA
1 CAGCATGTACCGATGGTGGTCGAGGCAA
1540746 GTGCCCGTAC
Statistics
Matches: 125, Mismatches: 36, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
44 3 0.02
45 119 0.95
46 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.16
Consensus pattern (45 bp):
CAGCATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACC
Found at i:1540701 original size:90 final size:90
Alignment explanation
Indices: 1540547--1540763 Score: 247
Period size: 90 Copynumber: 2.4 Consensus size: 90
1540537 TCAGCATATT
* * * ** * * *
1540547 CCGATGGTGGTCAAGGCAACCGCCCGCACCATGACCCAGCATGTGCCGATGGTGTTCGATGCAAC
1 CCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCATGTGCCAATGGTGATCGAGGCAAC
* * * *
1540612 CGCCTACACCAGGGGCCATCTTGTA
66 CACCCACACCAGGGCCCAGCTTGTA
**
1540637 CCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCTGGCATGTGCCAATGGTGATCGAGGCAAC
1 CCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCATGTGCCAATGGTGATCGAGGCAAC
*
1540702 CACCCACACCAGGGCCCAGCTTGTG
66 CACCCACACCAGGGCCCAGCTTGTA
* * *
1540727 CAGATGGCGGTCGAGGCAAGT-GCCCGTACCAAAGGGC
1 CCGATGGTGGTCGAGGCAA-TCGCCCGCACC-AAGGGC
1540764 AGCCTATGCC
Statistics
Matches: 107, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
90 100 0.93
91 7 0.07
ACGTcount: A:0.22, C:0.32, G:0.31, T:0.15
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCATGTGCCAATGGTGATCGAGGCAAC
CACCCACACCAGGGCCCAGCTTGTA
Found at i:1541724 original size:26 final size:26
Alignment explanation
Indices: 1541676--1541728 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1541666 GTTGACTTAG
*
1541676 GCATACGGAGTTCATCGTCAGTCTAA
1 GCATACGGAGTTCATCCTCAGTCTAA
*
1541702 GCATATGGAGTTCATTCCT-AGTCTAA
1 GCATACGGAGTTCA-TCCTCAGTCTAA
1541728 G
1 G
1541729 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCAGTCTAA
Found at i:1542062 original size:26 final size:26
Alignment explanation
Indices: 1542032--1542084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1542022 GTTGACTTAG
*
1542032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1542058 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1542084 G
1 G
1542085 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1542254 original size:45 final size:45
Alignment explanation
Indices: 1542138--1542293 Score: 127
Period size: 45 Copynumber: 3.5 Consensus size: 45
1542128 GCATGTGTCA
* * * * * * * *
1542138 ATGGTGGTCGAAGCACCCGCCTGCACCATGACCCAGCATGTGTCG
1 ATGGTGGTCGAGGCAACTGCCTGCACCAGGGCCCAGCTTATGCCG
* * ** * * * *
1542183 ATGGTGTTTGATACAACCG-CTCGCACCAAGGG-CCATCTTGTGCTG
1 ATGGTGGTCGAGGCAACTGCCT-GCACC-AGGGCCCAGCTTATGCCG
1542228 ATGGTGGTCGAGGCAACTGCCTGCACCAGGGCCCAGCTTATGCCG
1 ATGGTGGTCGAGGCAACTGCCTGCACCAGGGCCCAGCTTATGCCG
*
1542273 ATGGTGGTCGAGGCAAGTGCC
1 ATGGTGGTCGAGGCAACTGCC
1542294 CGTACCAAAG
Statistics
Matches: 87, Mismatches: 20, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
44 6 0.07
45 77 0.89
46 4 0.05
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACTGCCTGCACCAGGGCCCAGCTTATGCCG
Found at i:1542861 original size:45 final size:44
Alignment explanation
Indices: 1542788--1542990 Score: 172
Period size: 45 Copynumber: 4.5 Consensus size: 44
1542778 CCGGGGCTTG
* *
1542788 ACATGTGCCAATGGTGGTCGAGGAAACCGCCCGCACCACGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCA
* * * *
1542833 ACATGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGAGGCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAG-GCCCA
* * * * * ** *
1542878 TCTTATGCCGATGGTGGTCGAGGCAATCGCTCGCACCAAGGGTCG
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGCCCA
* * * *
1542923 ACATGTGCCGGTGGTGATCGAGGCAACCACCCACACCAGGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCA
* * * *
1542968 ACTTGTGTCGATGGCGATCGAGG
1 ACATGTGCCGATGGTGGTCGAGG
1542991 TAAGTGCCCG
Statistics
Matches: 123, Mismatches: 32, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
44 2 0.02
45 119 0.97
46 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.31, T:0.17
Consensus pattern (44 bp):
ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGCCCA
Found at i:1542960 original size:90 final size:89
Alignment explanation
Indices: 1542793--1542965 Score: 211
Period size: 90 Copynumber: 1.9 Consensus size: 89
1542783 GCTTGACATG
* * * *
1542793 TGCCAATGGTGGTCGAGGAAACCGCCCGCACCACGGCCCAACATGTGTCGATGGTGTTCGATGCA
1 TGCCAATGGTGGTCGAGGAAACCGCCCGCACCAAGGCCCAACATGTGCCGATGGTGATCGAGGCA
* *
1542858 ACCGCCCGCACCAGAGGCCATCTTA
66 ACCACCCACACCAG-GGCCATCTTA
* * * * ** * *
1542883 TGCCGATGGTGGTCGAGGCAATCGCTCGCACCAAGGGTCGACATGTGCCGGTGGTGATCGAGGCA
1 TGCCAATGGTGGTCGAGGAAACCGCCCGCACCAAGGCCCAACATGTGCCGATGGTGATCGAGGCA
1542948 ACCACCCACACCAGGGCC
66 ACCACCCACACCAGGGCC
1542966 CAACTTGTGT
Statistics
Matches: 69, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
89 4 0.06
90 65 0.94
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.16
Consensus pattern (89 bp):
TGCCAATGGTGGTCGAGGAAACCGCCCGCACCAAGGCCCAACATGTGCCGATGGTGATCGAGGCA
ACCACCCACACCAGGGCCATCTTA
Found at i:1542980 original size:90 final size:90
Alignment explanation
Indices: 1542793--1542990 Score: 209
Period size: 90 Copynumber: 2.2 Consensus size: 90
1542783 GCTTGACATG
* * * * *
1542793 TGCCAATGGTGGTCGAGGAAACCGCCCGCACCACGGCCCAACATGTGTCGATGGTGTTCGATGCA
1 TGCCGATGGTGGTCGAGGAAACCGCCCGCACCAAGGCCCAACATGTGCCGATGGTGATCGAGGCA
* * *
1542858 ACCGCCCGCACCAGAGGCCATCTTA
66 ACCACCCACACCAGAGGCCAACTTA
* * * ** * *
1542883 TGCCGATGGTGGTCGAGGCAATCGCTCGCACCAAGGGTCGACATGTGCCGGTGGTGATCGAGGCA
1 TGCCGATGGTGGTCGAGGAAACCGCCCGCACCAAGGCCCAACATGTGCCGATGGTGATCGAGGCA
*
1542948 ACCACCCACACCAG-GGCCCAACTTG
66 ACCACCCACACCAGAGG-CCAACTTA
* * *
1542973 TGTCGATGGCGATCGAGG
1 TGCCGATGGTGGTCGAGG
1542991 TAAGTGCCCG
Statistics
Matches: 88, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
89 2 0.02
90 86 0.98
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (90 bp):
TGCCGATGGTGGTCGAGGAAACCGCCCGCACCAAGGCCCAACATGTGCCGATGGTGATCGAGGCA
ACCACCCACACCAGAGGCCAACTTA
Found at i:1544516 original size:45 final size:44
Alignment explanation
Indices: 1544440--1544560 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 44
1544430 CCAACATGTG
* * * * *
1544440 CCGATGGTGTTCGATGCAATCGCACGTACCAGGGGCC-ATCTTGTA
1 CCGATGGTGATCGAGGCAAT-GCCCGTACCA-GGGCCTAGCTTGGA
* * *
1544485 CCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCTAGCTTGGG
1 CCGATGGTGATCGAGGCAA-TGCCCGTACCAGGGCCTAGCTTGGA
*
1544530 CCGATGGCGATCGAGGCAAGTGCCCGTACCA
1 CCGATGGTGATCGAGGCAA-TGCCCGTACCA
1544561 AAGGGCAGCC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 5 0.08
45 57 0.90
46 1 0.02
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (44 bp):
CCGATGGTGATCGAGGCAATGCCCGTACCAGGGCCTAGCTTGGA
Found at i:1545872 original size:26 final size:26
Alignment explanation
Indices: 1545836--1545888 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1545826 GTTGACTTAG
* *
1545836 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1545862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1545888 G
1 G
1545889 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1546335 original size:45 final size:45
Alignment explanation
Indices: 1546167--1546342 Score: 183
Period size: 45 Copynumber: 3.9 Consensus size: 45
1546157 GACTGGGGCT
* * * * * *
1546167 CAGCATGTGTCGATGGTGGTCAAGGCAACCGCCCGCACCATGACC
1 CAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCC
* * * * *
1546212 CAGCATGTGCCGATGGTGTTCGATGCAA-TCGCCCGCACCAGGGGC
1 CAGCTTGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACCAAGGCC
*
1546257 CATCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCC
1 CAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCC
* * * * *
1546302 CAGCTTGGGCTGATGGCGGTCGAGGCAAGTGCCCGTACCAA
1 CAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAA
1546343 AGGGCAGCCT
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
45 108 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
CAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCC
Found at i:1546361 original size:90 final size:90
Alignment explanation
Indices: 1546162--1546366 Score: 216
Period size: 90 Copynumber: 2.3 Consensus size: 90
1546152 GGGTTGACTG
* *
1546162 GGGCTCAGCATGTGTCGATGGTGGTCAAGGCAACCGCCCGCACCATGACCCAGCATGTGCCGATG
1 GGGC-CAGCATGTGTCGATGGTGGTCAAGGCAACCGCCCGCACCAAGACCCAGCATGGGCCGATG
* * * *
1546227 GTGTTCGATGCAATCGCCCGCACCAG
65 GCGGTCGAGGCAATCGCCCGCACCAA
* * * * * * * *
1546253 GGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCAGCTTGGGCTGATGG
1 GGGCCAGCATGTGTCGATGGTGGTCAAGGCAACCGCCCGCACCAAGACCCAGCATGGGCCGATGG
*
1546318 CGGTCGAGGCAAGT-GCCCGTACCAAA
66 CGGTCGAGGCAA-TCGCCCGCACC-AA
* *
1546344 GGG-CAGCCTGTGTCGATGATGGT
1 GGGCCAGCATGTGTCGATGGTGGT
1546367 TGATGCATGT
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
90 84 0.90
91 9 0.10
ACGTcount: A:0.19, C:0.29, G:0.34, T:0.18
Consensus pattern (90 bp):
GGGCCAGCATGTGTCGATGGTGGTCAAGGCAACCGCCCGCACCAAGACCCAGCATGGGCCGATGG
CGGTCGAGGCAATCGCCCGCACCAA
Found at i:1547299 original size:26 final size:26
Alignment explanation
Indices: 1547269--1547321 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1547259 GTTGACTTAG
*
1547269 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1547295 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1547321 G
1 G
1547322 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1547660 original size:26 final size:26
Alignment explanation
Indices: 1547624--1547676 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1547614 GTTGACTTAG
* *
1547624 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1547650 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1547676 G
1 G
1547677 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1548119 original size:158 final size:158
Alignment explanation
Indices: 1547700--1548125 Score: 435
Period size: 158 Copynumber: 2.7 Consensus size: 158
1547690 CAGCATACAA
* * * *
1547700 AGGGGGACCGGGTCGATCCTCGACTTCCACATCCTACCTCTCC-GACCAGCTGAGTGCCTGCACA
1 AGGGGGACCAGGTCGATCCTCGACTTACGCATCCTACCTCTCCAG-CCAGCTGAGTGCCTGCACG
* * **
1547764 CTCGTTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCTGGTCTAAGCCCCAACTTTACCGAG
65 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTTGGTCTAAGCCCCAACTGGACCGAG
* * **
1547829 GGACCCACAGCGGGATCGACAGCATGTTG
130 GGACCCACAGCGGAATCGACAGCACGCAG
* * * * * * * * * * **
1547858 AAGGGGACCAAGTCGATCCTTGGCTTACGCATCCTATCTCTTCGATCGA-TTAAGCACCTGCACG
1 AGGGGGACCAGGTCGATCCTCGACTTACGCATCCTACCTC-TCCAGCCAGCTGAGTGCCTGCACG
* * *
1547922 CTCGTTCCGTGGGTTGACTTAGGCATACAGAGTTTATTCTTGGTCTAAGCCCCAA-TCGGATCGA
65 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTTGGTCTAAGCCCCAACT-GGACCGA
*
1547986 GGGACCCGCAGCGGAATCGACAGCACGCAG
129 GGGACCCACAGCGGAATCGACAGCACGCAG
* * * * * * *
1548016 AGGGGGACCAGGTCGATCCTCAACTTGCGCATTCTAGCTCTCCAGCCAGCTGAGTGCCCGTATGC
1 AGGGGGACCAGGTCGATCCTCGACTTACGCATCCTACCTCTCCAGCCAGCTGAGTGCCTGCACGC
* * ** * *
1548081 TTGTTTCATGGGTTGACTTAGGCATACTTAGTGCATTCTCGGTCT
66 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTTGGTCT
1548126 CGACGAACCA
Statistics
Matches: 210, Mismatches: 54, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
157 6 0.03
158 200 0.95
159 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.25
Consensus pattern (158 bp):
AGGGGGACCAGGTCGATCCTCGACTTACGCATCCTACCTCTCCAGCCAGCTGAGTGCCTGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCTTGGTCTAAGCCCCAACTGGACCGAGG
GACCCACAGCGGAATCGACAGCACGCAG
Found at i:1550440 original size:26 final size:26
Alignment explanation
Indices: 1550405--1550454 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1550395 GACTTAGGTA
1550405 TATAGAGTTCATCCCCAGTCTAAGCG
1 TATAGAGTTCATCCCCAGTCTAAGCG
*
1550431 TATAGAGTTCATTCCCAGTCTAAG
1 TATAGAGTTCATCCCCAGTCTAAG
1550455 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TATAGAGTTCATCCCCAGTCTAAGCG
Found at i:1550903 original size:26 final size:26
Alignment explanation
Indices: 1550867--1550919 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1550857 GTTGACTTAG
1550867 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1550893 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1550919 G
1 G
1550920 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1551011 original size:162 final size:161
Alignment explanation
Indices: 1550732--1551056 Score: 364
Period size: 162 Copynumber: 2.0 Consensus size: 161
1550722 GTTGACTTAG
* * * * *
1550732 GCATACGGAGTTCATTCCAAGTCTACGATCGGACCCGTAGCAGCATGTAGAGGGGACCAGGCCGA
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCCGCAGCAGCACGCAGAGGGGACCAGGCCGA
* * * ** *
1550797 TCCTCAGCTTACGTATCCTACCTCTCCGACCGGCTGAGTGCCACCACGCTCGTTTCTTAGGTTGA
66 TCCTCAGCTTAAGCATCCTACCTCTCCAACCGGCTGAGCACCACCACGCTCGTTTCATAGGTTGA
** *
1550862 CTTAGGCATATGGAGTTCATTCCCAGTCTAA
131 CTTAGGCATACAGAGTTCATTCCCAGTCGAA
* * ** * *
1550893 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGCAGCAGCACGCAGAGGGAGATCGGGCCG
1 GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCCGCAGCAGCACGCAGAGGG-GACCAGGCCG
* * * * * * *
1550958 ATCCTCGGCTTAAGCATCCTACCTTTTCAATCGGTTGAGCACC-CGCGCGCTCGTTTCATGGGTT
65 ATCCTCAGCTTAAGCATCCTACCTCTCCAACCGGCTGAGCACCAC-CACGCTCGTTTCATAGGTT
* *
1551022 GACTTTGGCATACAGAGTTCATTCCCGGTCGAA
129 GACTTAGGCATACAGAGTTCATTCCCAGTCGAA
1551055 GC
1 GC
1551057 CCCAATCGGA
Statistics
Matches: 133, Mismatches: 29, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
161 46 0.35
162 87 0.65
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.25
Consensus pattern (161 bp):
GCATACGGAGTTCATTCCAAGTCTAAGATCAGACCCGCAGCAGCACGCAGAGGGGACCAGGCCGA
TCCTCAGCTTAAGCATCCTACCTCTCCAACCGGCTGAGCACCACCACGCTCGTTTCATAGGTTGA
CTTAGGCATACAGAGTTCATTCCCAGTCGAA
Found at i:1551409 original size:13 final size:13
Alignment explanation
Indices: 1551391--1551415 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1551381 ATGGTCGATG
1551391 CATGTGCCATCAC
1 CATGTGCCATCAC
1551404 CATGTGCCATCA
1 CATGTGCCATCA
1551416 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1552309 original size:26 final size:26
Alignment explanation
Indices: 1552279--1552331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1552269 GTTGACTTAG
1552279 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1552305 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1552331 G
1 G
1552332 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1552465 original size:196 final size:196
Alignment explanation
Indices: 1552124--1552486 Score: 446
Period size: 196 Copynumber: 1.9 Consensus size: 196
1552114 TGTAGTGCAC
* * * * *
1552124 TCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGCCAACAGGACCCGTAGAGGGATCGACAGCA
1 TCCCAGTCTAAGATTAGACCGGACCGAGGGTTATGACAACAGGACCAGCAGAAGGATCGACAGCA
* * * * *
1552189 TGCAGAGGGGATCGAGTCGATCACTGACTTGCGCATCTTACCTCTCTGACCGGCTGAACGCCCGC
66 TGCAGAGGGGACCGAGTCGATCACCGACTTACACATCTTACCTCTCTGACCGACTGAACGCCCGC
* * * *
1552254 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
131 ACACTCGTGTCATGGGTTGACTGACGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
1552319 T
196 T
* * *
1552320 TCCCAGTCTAAGATTGGATCGGACTGAGGGTTATGACAACAGGACCAGCA-ATAGGATCGACAGC
1 TCCCAGTCTAAGATTAGACCGGACCGAGGGTTATGACAACAGGACCAGCAGA-AGGATCGACAGC
* * * * *
1552384 ACT-CAG-GAGGGACCGGGTCGATCCCCGGCTTACACAT-TCTACCTCTCTGGCCGACTGAGCGC
65 A-TGCAGAG-GGGACCGAGTCGATCACCGACTTACACATCT-TACCTCTCTGACCGACTGAACGC
* *
1552446 CTGCACACTCGTGTCATGGGTTGACTGACGCATACGGAGTT
127 CCGCACACTCGTGTCATGGGTTGACTGACGCATACAGAGTT
1552487 TATTACCGGT
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
195 3 0.02
196 135 0.97
197 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
TCCCAGTCTAAGATTAGACCGGACCGAGGGTTATGACAACAGGACCAGCAGAAGGATCGACAGCA
TGCAGAGGGGACCGAGTCGATCACCGACTTACACATCTTACCTCTCTGACCGACTGAACGCCCGC
ACACTCGTGTCATGGGTTGACTGACGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
T
Found at i:1553944 original size:26 final size:26
Alignment explanation
Indices: 1553908--1553960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1553898 GTTGACTTAG
1553908 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1553934 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1553960 G
1 G
1553961 ATCAGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1555874 original size:26 final size:26
Alignment explanation
Indices: 1555844--1555896 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1555834 GTTGACTTAG
*
1555844 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1555870 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1555896 G
1 G
1555897 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1556630 original size:452 final size:452
Alignment explanation
Indices: 1555786--1556668 Score: 1085
Period size: 452 Copynumber: 2.0 Consensus size: 452
1555776 TCCGACTTGT
* * *
1555786 GCATCCTGCCTCTCTGGCTAGCTGAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACG
1 GCATCCTGCCTCTCTAGCTAGCTGAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACG
** *
1555851 GAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGT
66 GAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCAAAGTCTAAGATCGAACCAGATCGAAGGT
** * * *
1555916 TGCGGCAGTAGGACCAGTAGCAGGATCGACAGCACGCAGGGGGGACAGGGCCAATCCCCGACTTG
131 TGCGGCAGTAGGACCAACAGCAGGATCGACAGCACGCAGGGGGGACAGAGCCAATCCCCAACTTA
* * *
1555981 CGTATTCTGCCTCTCCAGTCGACTGAGCCCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATAC
196 CGCATTCTACCTCTCCAGTCGACTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
* * * *
1556046 GGAGTTCATTCCTGGTCTAAGCCCAAGTCAGACCGAAGGTTGTGACAGCGAGATCGGTAGCACGT
261 GGAGTTCATTCCTGGTCTAAGCCCAAGTCAAACCGAAGGTTGTGACAGCGAGACCGATAGCACAT
* * * * * * *
1556111 AGAGAGGGATTGGGTCGGTCTCGGACTTGCTCATTATGCCTCTCCGACTTGCTCAGCACCTGCAC
326 AGAAAGGGATCGGGTCGATCCCGGACTTGATCATTATGCCTCTCCGACCTGCTCAGCACCCGCAC
1556176 GCT-AGTTTTGTGGGTTGACTT-AGGCATAC-AGAGTTCATTCCCAGTTTACGATCGAACCAGTA
391 GCTCA-TTTTGTGGGTTGACTTCA-GCATACGA-AGTTCATTCCCAGTTTACGATCGAACCAGTA
* * * **
1556238 GCATCCTGCCTCTCTAGCTGGCTGAGCG-CCACACGCTCGTTTCGTGGGTTGACTTAGGCATATT
1 GCATCCTGCCTCTCTAGCTAGCTGAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACG
* * * *
1556302 GAGTTCATCCCTAGTCTAAGCATACGTAGTTCATTCAAAGTCTAAGAT-GTGACC-GAATTGAAG
66 GAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCAAAGTCTAAGATCG-AACCAG-ATCGAAG
* * * * **
1556365 GTTGCGGTAGTAGGACCAACAGTAGGATC-AGCTGCACGCAGGAGGGGACCGAGCTTATCCCCAA
129 GTTGCGGCAGTAGGACCAACAGCAGGATCGA-CAGCACGCAGG-GGGGACAGAGCCAATCCCCAA
* * *
1556429 CTTACGCATTCTACCTCTTC-GATCGACTGAGCCCCCGTATGCTCATTTCATGGGTTGGCTTAGG
192 CTTACGCATTCTACCTCTCCAG-TCGACTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAGG
* **
1556493 CATACGGAGTTCATTCCAT-GTCTAAGCCCCAA-TCAAACTG-AGTGTTGTGGTAGC-ATGACCG
256 CATACGGAGTTCATTCC-TGGTCTAAG-CCCAAGTCAAACCGAAG-GTTGTGACAGCGA-GACCG
*
1556554 ATAGCACATAGAAAGGGATCGGG-CTGATCCCCGG-CTT-ATGCATTATGCCTCTTCGACCTGCT
317 ATAGCACATAGAAAGGGATCGGGTC-GAT-CCCGGACTTGAT-CATTATGCCTCTCCGACCTGCT
**
1556616 CAGTGCCCGCACGCTCATTTTGTGGGTTGACTTCAGCATACGAAGTTCATTCC
379 CAGCACCCGCACGCTCATTTTGTGGGTTGACTTCAGCATACGAAGTTCATTCC
1556669 TAGTCTAAGC
Statistics
Matches: 367, Mismatches: 49, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
450 3 0.01
451 124 0.34
452 227 0.62
453 13 0.04
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (452 bp):
GCATCCTGCCTCTCTAGCTAGCTGAGCGCCCACACACTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCAAAGTCTAAGATCGAACCAGATCGAAGGT
TGCGGCAGTAGGACCAACAGCAGGATCGACAGCACGCAGGGGGGACAGAGCCAATCCCCAACTTA
CGCATTCTACCTCTCCAGTCGACTGAGCCCCCGCACGCTCATTTCATGGGTTGGCTTAGGCATAC
GGAGTTCATTCCTGGTCTAAGCCCAAGTCAAACCGAAGGTTGTGACAGCGAGACCGATAGCACAT
AGAAAGGGATCGGGTCGATCCCGGACTTGATCATTATGCCTCTCCGACCTGCTCAGCACCCGCAC
GCTCATTTTGTGGGTTGACTTCAGCATACGAAGTTCATTCCCAGTTTACGATCGAACCAGTA
Found at i:1556686 original size:26 final size:26
Alignment explanation
Indices: 1556650--1556703 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
1556640 GGTTGACTTC
*
1556650 AGCATACGAAGTTCATTCCTAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
1556676 AGCATACGAAGTTCATTCCCAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
1556702 AG
1 AG
1556704 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAGTCTA
Found at i:1558272 original size:26 final size:26
Alignment explanation
Indices: 1558222--1558274 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1558212 GTTGACTTAG
*
1558222 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
1558248 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1558274 G
1 G
1558275 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1560481 original size:26 final size:26
Alignment explanation
Indices: 1560452--1560504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1560442 GTTGACTTAG
1560452 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
1560478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
1560504 G
1 G
1560505 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:1562122 original size:26 final size:26
Alignment explanation
Indices: 1562086--1562138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1562076 ATTGACATAG
*
1562086 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1562112 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1562138 G
1 G
1562139 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1563938 original size:40 final size:40
Alignment explanation
Indices: 1563862--1563938 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
1563852 ACCGGGCCGA
* * *
1563862 TCCTCGACTTACGCATTATAGTTCTTCGATCGGCTGAACG
1 TCCTCGACTTACGCATTATAGCTCTCCGATCAGCTGAACG
* * * *
1563902 TCCTCGACTTATGCATTCTGGCTCTCCGGTCAGCTGA
1 TCCTCGACTTACGCATTATAGCTCTCCGATCAGCTGA
1563939 GTGCCCGCAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.17, C:0.30, G:0.21, T:0.32
Consensus pattern (40 bp):
TCCTCGACTTACGCATTATAGCTCTCCGATCAGCTGAACG
Found at i:1564814 original size:170 final size:170
Alignment explanation
Indices: 1564422--1564793 Score: 471
Period size: 170 Copynumber: 2.2 Consensus size: 170
1564412 TAAGTGCTCA
* * *
1564422 CACGCTCGTTTTGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTGAGATCATACCAGAC
1 CACGCTTGTTTTGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAGATCAGACCAGAC
* * * ***
1564487 CGAGGGTTGCGATAGCAGGACCCGTAGTGGGATCGATAGCATGTAGAAGGGATCGGGTCAATCCC
66 CGAGGGTTGCGATAGCAGGACCCGCAGCGGGATCAATAGCACACAGAAGGGATCGGGTCAATCCC
* * * *
1564552 TGACTTGCGTATCCTACCTCTCTGGCCTGTCGAGTGCCCG
131 TGACTTGCGCATCCTACCTCTCTGGCCGGTCAAGCGCCCG
* * *
1564592 CACG-TTCATTTTGTAGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAGATCAGATCAGA
1 CACGCTT-GTTTTGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAGATCAGACCAGA
* * * *
1564656 TCGAGGGTTGC-AGTAGCAGGACTCGCAGCGGGATCAATAGCACACAGAGGGGATCGGGTCGATC
65 CCGAGGGTTGCGA-TAGCAGGACCCGCAGCGGGATCAATAGCACACAGAAGGGATCGGGTCAATC
* * * *
1564720 CCTGGCTTGTGCATCCTGCCTCTCTGGTCGG-CTAAGCGCCCG
129 CCTGACTTGCGCATCCTACCTCTCTGGCCGGTC-AAGCGCCCG
*
1564762 TACGCTTGTTTTGTGGGTTGACTTAGGCATAC
1 CACGCTTGTTTTGTGGGTTGACTTAGGCATAC
1564794 AGAGTTCATC
Statistics
Matches: 171, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
169 3 0.02
170 166 0.97
171 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.26
Consensus pattern (170 bp):
CACGCTTGTTTTGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAGATCAGACCAGAC
CGAGGGTTGCGATAGCAGGACCCGCAGCGGGATCAATAGCACACAGAAGGGATCGGGTCAATCCC
TGACTTGCGCATCCTACCTCTCTGGCCGGTCAAGCGCCCG
Found at i:1564824 original size:26 final size:26
Alignment explanation
Indices: 1564788--1564840 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1564778 GTTGACTTAG
1564788 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
1564814 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1564840 G
1 G
1564841 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1564971 original size:195 final size:196
Alignment explanation
Indices: 1564633--1564997 Score: 459
Period size: 195 Copynumber: 1.9 Consensus size: 196
1564623 CGTAGTGCGC
* * *
1564633 TCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCAGTAGCAGGACTCGCAGCGGGATCAATAGCA
1 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGACTCGCAGCAGGATCAATAGCA
* ** * * * **
1564698 CACAGAGGGGATCGGGTCGATCCCTGGCTTGTGCATCCTGCCTCTCTGGTCGGCTAAGCGCCCGT
66 CACAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATCCTACCTCTCCGACCGGCTAAGCGCCCGT
**
1564763 ACGCTTGTTTTGTGGGTTGACTTAGGCATAC-AGAGTTCATCCCTAGTCTAAGCATACAGAGTTC
131 ACGCTCATTTTGTGGGTTGACTTAGGCATACGA-AGTTCATCCCTAGTCTAAGCATACAGAGTTC
1564827 AT
195 AT
* * ***
1564829 TCCCAGTCTAAGATCAGACCAGA-CGAGGGTTGCGGCAGTAGGA-TCAGCAGCAGGATTGGTAGC
1 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGACTC-GCAGCAGGATCAATAGC
* * * * *
1564892 ACGCAGGGGGGA-CTGGGCCGATCCCCAGCTTGCGCATTCTACCTCTCCGACCGGCTGAGCGCTC
65 ACACAGAGGGGATC-GGGCCGATCCCCAGCTTGCGCATCCTACCTCTCCGACCGGCTAAGCGCCC
*
1564956 GTACGCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCAT
129 GTACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCAT
1564998 TCCATGTCTA
Statistics
Matches: 142, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
194 3 0.02
195 116 0.82
196 23 0.16
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (196 bp):
TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGACTCGCAGCAGGATCAATAGCA
CACAGAGGGGATCGGGCCGATCCCCAGCTTGCGCATCCTACCTCTCCGACCGGCTAAGCGCCCGT
ACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGTCTAAGCATACAGAGTTCA
T
Found at i:1566771 original size:26 final size:26
Alignment explanation
Indices: 1566741--1566790 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1566731 GACTTAGGCG
1566741 TACGGACTTCATACCCAATCTAAGCA
1 TACGGACTTCATACCCAATCTAAGCA
* * *
1566767 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGACTTCATACCCAATCTAAG
1566791 ATCGGATCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
TACGGACTTCATACCCAATCTAAGCA
Found at i:1567129 original size:26 final size:26
Alignment explanation
Indices: 1567093--1567145 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1567083 GTTGACTTAG
1567093 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1567119 GCATGCAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1567145 G
1 G
1567146 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1568715 original size:26 final size:26
Alignment explanation
Indices: 1568679--1568729 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1568669 TGACTTAGGC
*
1568679 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGAAGTTCATCCCCAGTCTAAGT
1568705 ATACGAAGTTCATCCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
1568730 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGT
Found at i:1570497 original size:26 final size:26
Alignment explanation
Indices: 1570467--1570519 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1570457 GTTGACTTAG
*
1570467 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATATGAAGTTCATCCCTAGTCTAA
* * *
1570493 GCATATGAATTTCCTTCCTAGTCTAA
1 GCATATGAAGTTCATCCCTAGTCTAA
1570519 G
1 G
1570520 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCTAGTCTAA
Found at i:1570858 original size:26 final size:25
Alignment explanation
Indices: 1570822--1570872 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 25
1570812 GTTGACTTAG
1570822 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATT-CCAGTCTAA
1570848 GCATACAGAGTTCATTCCAGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
1570873 TATTGAACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:1571372 original size:45 final size:44
Alignment explanation
Indices: 1571323--1571479 Score: 138
Period size: 45 Copynumber: 3.5 Consensus size: 44
1571313 AAATGTGCCG
*
1571323 ATGGTGGTCGAGGCAACTGCCCGCACCATAGCCCAGCATGTGTCA
1 ATGGTGGTCGAGGCAACCGCCCGCACCATAG-CCAGCATGTGTCA
* * * * * * *
1571368 ATGGTGTTTGATGCAACCGCCCGTACCAGGT-GCCATCTTGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCA--TAGCCAGCATGTGTCA
* * * *
1571413 ATGGTGGTTGAGGCAATCGCCCGCACCA-AGGGCCGGCATGTGCCA
1 ATGGTGGTCGAGGCAACCGCCCGCACCATA--GCCAGCATGTGTCA
*
1571458 ATGGTGATCGAGGCAACCGCCC
1 ATGGTGGTCGAGGCAACCGCCC
1571480 ACACTAGGGC
Statistics
Matches: 87, Mismatches: 20, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
45 85 0.98
46 1 0.01
47 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (44 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCATAGCCAGCATGTGTCA
Found at i:1571460 original size:90 final size:90
Alignment explanation
Indices: 1571316--1571479 Score: 224
Period size: 90 Copynumber: 1.8 Consensus size: 90
1571306 GGGCTCGAAA
* * * *
1571316 TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCATAGCCCAGCATGTGTCAATGGTGTTTGATG
1 TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCATAGCCCAGCATGTGCCAATGGTGATCGAGG
1571381 CAACCGCCCGTACCAGGTGCCATCT
66 CAACCGCCCGTACCAGGTGCCATCT
* * * *
1571406 TGTGTCGATGGTGGTTGAGGCAA-TCGCCCGCACCA-AGGGCCGGCATGTGCCAATGGTGATCGA
1 TGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACCATA-GCCCAGCATGTGCCAATGGTGATCGA
1571469 GGCAACCGCCC
64 GGCAACCGCCC
1571480 ACACTAGGGC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
89 2 0.03
90 62 0.97
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCATAGCCCAGCATGTGCCAATGGTGATCGAGG
CAACCGCCCGTACCAGGTGCCATCT
Found at i:1571506 original size:90 final size:90
Alignment explanation
Indices: 1571321--1571524 Score: 209
Period size: 90 Copynumber: 2.3 Consensus size: 90
1571311 CGAAATGTGC
* * * *
1571321 CGATGGTGGTCGAGGCAACTGCCCGCACCATAGCCCAGCATGTGTCAATGGTGTTTGATGCAACC
1 CGATGGTGGTCGAGGCAACTGCCCGCACCATAGCCCAGCATGTGCCAATGGTGATCGAGGCAACC
** * *
1571386 GCCCGTACCAGGTGCCATCTTGTGT
66 GCCCACACCAGGTGCCAGCTTATGT
* * *
1571411 CGATGGTGGTTGAGGCAA-TCGCCCGCACCA-AGGGCCGGCATGTGCCAATGGTGATCGAGGCAA
1 CGATGGTGGTCGAGGCAACT-GCCCGCACCATA-GCCCAGCATGTGCCAATGGTGATCGAGGCAA
*
1571474 CCGCCCACACTAGG-GCCCAGCTTATG-
64 CCGCCCACACCAGGTG-CCAGCTTATGT
* * *
1571500 CTGATGGCGGTCGAGGTAAGTGCCC
1 C-GATGGTGGTCGAGGCAACTGCCC
1571525 ATACCAAAGG
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
89 4 0.04
90 89 0.95
91 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (90 bp):
CGATGGTGGTCGAGGCAACTGCCCGCACCATAGCCCAGCATGTGCCAATGGTGATCGAGGCAACC
GCCCACACCAGGTGCCAGCTTATGT
Found at i:1571896 original size:26 final size:26
Alignment explanation
Indices: 1571866--1571916 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1571856 GTTAACTTAG
1571866 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1571892 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
1571917 TGATTGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1572752 original size:45 final size:45
Alignment explanation
Indices: 1572702--1572906 Score: 164
Period size: 45 Copynumber: 4.6 Consensus size: 45
1572692 CGAGGCACAA
* * *
1572702 CATGTGTCGATGGTGGTCGAGGCAACCGCCCACCCCACGGCCCAG
1 CATGTGTCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAG
* * * * *
1572747 CATGTGTCAATGGTGTTCGATGCAACCGCCCACACTAGAGG-CCAT
1 CATGTGTCGATGGTGATCGAGGCAACCGCCCACACCAG-GGCCCAG
* * * * * * * ** *
1572792 CTTCTGCCAATGGTGGTCGAGGCAATCGCTCGTACCAAGGGCCGA-
1 CATGTGTCGATGGTGATCGAGGCAACCGCCCACACC-AGGGCCCAG
* *
1572837 CATGTG-CTGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCTAG
1 CATGTGTC-GATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAG
* *
1572882 CTTGTGTCGATGGCGATCGAGGCAA
1 CATGTGTCGATGGTGATCGAGGCAA
1572907 GTGCCCGTAC
Statistics
Matches: 126, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
44 8 0.06
45 111 0.88
46 7 0.06
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
CATGTGTCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAG
Found at i:1572970 original size:13 final size:13
Alignment explanation
Indices: 1572949--1572996 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
1572939 ATGGTCGATG
*
1572949 CATGTGCCATCAC
1 CATGCGCCATCAC
1572962 CATGCGCCAT---
1 CATGCGCCATCAC
*
1572972 CATGTGCCATCAC
1 CATGCGCCATCAC
1572985 CATGCGCCATCA
1 CATGCGCCATCA
1572997 TGTGCCATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
10 9 0.31
13 20 0.69
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.21
Consensus pattern (13 bp):
CATGCGCCATCAC
Found at i:1572977 original size:23 final size:23
Alignment explanation
Indices: 1572949--1573004 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
1572939 ATGGTCGATG
1572949 CATGTGCCATCACCATGCGCCAT
1 CATGTGCCATCACCATGCGCCAT
1572972 CATGTGCCATCACCATGCGCCAT
1 CATGTGCCATCACCATGCGCCAT
1572995 CATGTGCCAT
1 CATGTGCCAT
1573005 TGATCGAGGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.23
Consensus pattern (23 bp):
CATGTGCCATCACCATGCGCCAT
Found at i:1573868 original size:26 final size:26
Alignment explanation
Indices: 1573832--1573884 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1573822 GTTGACTTAG
*
1573832 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1573858 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1573884 G
1 G
1573885 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1581560 original size:26 final size:26
Alignment explanation
Indices: 1581525--1581577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1581515 GTTGACTTAG
*
1581525 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1581551 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1581577 G
1 G
1581578 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1582181 original size:45 final size:44
Alignment explanation
Indices: 1582035--1582189 Score: 139
Period size: 45 Copynumber: 3.5 Consensus size: 44
1582025 CGAGGCTCGA
* * **
1582035 CATGTGCCGATGGTGGTCGAGGCAACTGCCCACACCATGACCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAG-GGCAG
* * * * * *
1582080 GATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGG-CAG
* * * *
1582125 CTTGTGTCGATGGTGGTCGAGGCAAGTGCCCGTACCAAAGGGCAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACC-AAGGGCAG
* *
1582170 CCTGTGCCGATGATGGTCGA
1 CATGTGCCGATGGTGGTCGA
1582190 TGCATGTGCC
Statistics
Matches: 86, Mismatches: 22, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
45 82 0.95
46 4 0.05
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCAG
Found at i:1588812 original size:26 final size:26
Alignment explanation
Indices: 1588776--1588828 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1588766 GTTGACTTAG
1588776 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1588802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1588828 G
1 G
1588829 ATCTGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1589168 original size:26 final size:26
Alignment explanation
Indices: 1589132--1589184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1589122 GTTGACTTTG
1589132 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1589158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1589184 G
1 G
1589185 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1589674 original size:45 final size:45
Alignment explanation
Indices: 1589623--1589816 Score: 201
Period size: 45 Copynumber: 4.3 Consensus size: 45
1589613 CTGGGGCTTG
* * * * *
1589623 GCATGTGTCGATGGTGGTCGAGGCGACCGCCTGTACCACGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * * *
1589668 GCATGTGCTGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * *
1589713 TCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCA
* * *
1589759 -CATGTGTCGATGGTGATCAAGGCAACCGCCCGCACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* *
1589803 ACTTGTGCCGATGG
1 GCATGTGCCGATGG
1589817 CGATTGAGGC
Statistics
Matches: 120, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
44 7 0.06
45 107 0.89
46 6 0.05
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.18
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
Found at i:1589784 original size:90 final size:90
Alignment explanation
Indices: 1589626--1589816 Score: 233
Period size: 90 Copynumber: 2.1 Consensus size: 90
1589616 GGGCTTGGCA
* * * * * * *
1589626 TGTGTCGATGGTGGTCGAGGCGACCGCCTGTACCACGGCCCAGCATGTGCTGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCTGATGGTGATCAAGG
* *
1589691 CAACCGCCCACACCAGGGGCCATCT
66 CAACCGCCCACACCAGGGCCCAACT
* * *
1589716 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCC-GACATGTG-TCGATGGTGATCAA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG-CATGTGCT-GATGGTGATCAA
*
1589779 GGCAACCGCCCGCACCAGGGCCCAACT
64 GGCAACCGCCCACACCAGGGCCCAACT
1589806 TGTGCCGATGG
1 TGTGCCGATGG
1589817 CGATTGAGGC
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 2 0.02
90 84 0.98
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCTGATGGTGATCAAGG
CAACCGCCCACACCAGGGCCCAACT
Found at i:1589841 original size:90 final size:91
Alignment explanation
Indices: 1589626--1589846 Score: 225
Period size: 90 Copynumber: 2.4 Consensus size: 91
1589616 GGGCTTGGCA
* * * * * * * * *
1589626 TGTGTCGATGGTGGTCGAGGCGACCGCCTGTACC-ACGGCCCAGCATGTGCTGATGGTGTTCGAT
1 TGTGCCGATGGCGATCGAGGCAATCGCCTGTACCAAGGGCCCAGCATGTGCTGATGGTGATCAAG
* *
1589690 GCAACCGCCCACACCAGGGGCCATCT
66 GCAACCGCCCACACCAGGGCCCAACT
* * * * *
1589716 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGA-CATGTG-TCGATGGTGATCAA
1 TGTGCCGATGGCGATCGAGGCAATCGCCTGTACCAAGGGCCCAGCATGTGCT-GATGGTGATCAA
*
1589779 GGCAACCGCCCGCACCAGGGCCCAACT
65 GGCAACCGCCCACACCAGGGCCCAACT
*
1589806 TGTGCCGATGGCGATTGAGGCAAGT-GCCTGTACCAAAGGGC
1 TGTGCCGATGGCGATCGAGGCAA-TCGCCTGTACC-AAGGGC
1589847 AACCTGTGCT
Statistics
Matches: 109, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
89 1 0.01
90 95 0.87
91 13 0.12
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (91 bp):
TGTGCCGATGGCGATCGAGGCAATCGCCTGTACCAAGGGCCCAGCATGTGCTGATGGTGATCAAG
GCAACCGCCCACACCAGGGCCCAACT
Found at i:1589886 original size:23 final size:23
Alignment explanation
Indices: 1589856--1589906 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
1589846 CAACCTGTGC
1589856 TGCCATCACCATACGCCATCATG
1 TGCCATCACCATACGCCATCATG
1589879 TGCCATCACCATACGCCATCATG
1 TGCCATCACCATACGCCATCATG
1589902 TGCCA
1 TGCCA
1589907 CTGATGGTCG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.39, G:0.14, T:0.22
Consensus pattern (23 bp):
TGCCATCACCATACGCCATCATG
Found at i:1590800 original size:26 final size:26
Alignment explanation
Indices: 1590770--1590848 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
1590760 GTTGACTTAG
1590770 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
1590796 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
1590822 GCATACAAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1590848 G
1 G
1590849 ATCAGATTAG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 46 0.92
27 4 0.08
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1591182 original size:26 final size:26
Alignment explanation
Indices: 1591152--1591201 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1591142 GACTTAGGCA
*
1591152 TACGGAGTTCATTCCCAGTTTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
1591178 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1591202 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:1591767 original size:45 final size:45
Alignment explanation
Indices: 1591664--1591783 Score: 109
Period size: 45 Copynumber: 2.7 Consensus size: 45
1591654 TGTGCAGATG
* * * * * * *
1591664 GTGGTCGAGGCAACTGCCCGCACCACGGCCCAGTATGTGGCAATG
1 GTGGTCGAGGCAACTGCCCACACCAAGGGCCACTATATGCCAATA
* * *
1591709 GTGTTCGATGCAACTGCCCACACCAAGGGCCACCT-TATGCCGATA
1 GTGGTCGAGGCAACTGCCCACACCAAGGGCCA-CTATATGCCAATA
* *
1591754 GTGGTCGAGGCAACCGCCTACACC-AGGGCC
1 GTGGTCGAGGCAACTGCCCACACCAAGGGCC
1591784 TAGCTTGTGC
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
44 6 0.10
45 53 0.88
46 1 0.02
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (45 bp):
GTGGTCGAGGCAACTGCCCACACCAAGGGCCACTATATGCCAATA
Found at i:1593139 original size:26 final size:26
Alignment explanation
Indices: 1593109--1593161 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1593099 CTTGACTTAG
1593109 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1593135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1593161 G
1 G
1593162 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1593799 original size:45 final size:45
Alignment explanation
Indices: 1593613--1593830 Score: 186
Period size: 45 Copynumber: 4.8 Consensus size: 45
1593603 CGGGGCTCGA
* * * * * *
1593613 CATGTGCCAATGGTGGTCGAGGCAACCACCCGCACCATGACCCAG
1 CATGTGCCAATGGTGATCGAGGCAATCGCCCGTACCAAGGCCCAG
* * * * * * *
1593658 CATGTGCCAATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCAT
1 CATGTGCCAATGGTGATCGAGGCAATCGCCCGTACCAAGGCCCAG
* * * * * * * **
1593703 CTTGTGCCGATGGTGGTCGAGGCAATCGCTCATTCCAAGGGCTGG
1 CATGTGCCAATGGTGATCGAGGCAATCGCCCGTACCAAGGCCCAG
* *
1593748 CATGTGCCGATGGTGATCGAGGCAATCGCCCATACCAAGGCCCAG
1 CATGTGCCAATGGTGATCGAGGCAATCGCCCGTACCAAGGCCCAG
* *
1593793 CTTGTGCCAATGGCGATCGAGGCAAGT-GCCCGTACCAA
1 CATGTGCCAATGGTGATCGAGGCAA-TCGCCCGTACCAA
1593831 AGGGCAGCCT
Statistics
Matches: 141, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
45 140 0.99
46 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (45 bp):
CATGTGCCAATGGTGATCGAGGCAATCGCCCGTACCAAGGCCCAG
Found at i:1593855 original size:135 final size:135
Alignment explanation
Indices: 1593613--1593857 Score: 303
Period size: 135 Copynumber: 1.8 Consensus size: 135
1593603 CGGGGCTCGA
* * * * *
1593613 CATGTGCCAATGGTGGTCGAGGCAACCACCCGCACCATGACCCAGCATGTGCCAATGGTGTTCGA
1 CATGTGCCAATGGTGATCGAGGCAACCACCCACACCAAGACCCAGCATGTGCCAATGGCGATCGA
* * * * *
1593678 TGCAACCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATCGCTCATTCCAAGG
66 GGCAACCGCCCGCACCAAGGGCCAGCCTGTGCCGATGATGGTCGAGGCAATCGCTCATTCCAAGG
1593743 GCTGG
131 GCTGG
* * * * * *
1593748 CATGTGCCGATGGTGATCGAGGCAATCGCCCATACCAAGGCCCAGCTTGTGCCAATGGCGATCGA
1 CATGTGCCAATGGTGATCGAGGCAACCACCCACACCAAGACCCAGCATGTGCCAATGGCGATCGA
** *
1593813 GGCAAGTGCCCGTACCAAAGGG-CAGCCTGTGCCGATGATGGTCGA
66 GGCAACCGCCCGCACC-AAGGGCCAGCCTGTGCCGATGATGGTCGA
1593858 TGCATGTGCC
Statistics
Matches: 90, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
135 86 0.96
136 4 0.04
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (135 bp):
CATGTGCCAATGGTGATCGAGGCAACCACCCACACCAAGACCCAGCATGTGCCAATGGCGATCGA
GGCAACCGCCCGCACCAAGGGCCAGCCTGTGCCGATGATGGTCGAGGCAATCGCTCATTCCAAGG
GCTGG
Found at i:1596793 original size:26 final size:26
Alignment explanation
Indices: 1596756--1596808 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1596746 GTTGACTTAG
*
1596756 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
1596782 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1596808 G
1 G
1596809 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1597131 original size:26 final size:26
Alignment explanation
Indices: 1597102--1597154 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1597092 CTCGACTTAG
1597102 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1597128 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1597154 G
1 G
1597155 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1604136 original size:26 final size:27
Alignment explanation
Indices: 1604085--1604136 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
1604075 CAAAACTCCT
*
1604085 TCTAAAAGAATTTAAAAAATCCTGAAC
1 TCTAAAAGAATTTAAAAAATCATGAAC
* *
1604112 TCTAAAA-AGTTTTAAAAATCATGAA
1 TCTAAAAGAATTTAAAAAATCATGAA
1604137 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.29
Consensus pattern (27 bp):
TCTAAAAGAATTTAAAAAATCATGAAC
Found at i:1604561 original size:169 final size:170
Alignment explanation
Indices: 1604361--1604698 Score: 401
Period size: 170 Copynumber: 2.0 Consensus size: 170
1604351 GTAGTGCGCT
* * * * **
1604361 CCCAATCTAAGATCGGATCGGACTAAGGGTTGTGGCAGCAGGACCCACAGTGGGATCGACAGCAT
1 CCCAATCTAAGATCGGATCGAACTAAGGGTTGTAGCAGCAAGACCAACAGCAGGATCGACAGCAT
* * * * * * *
1604426 GTA-AGGGGACC-GAGTCGATCCCTGGCTTACGCCTCCTGCCTCTCTGGCCGGCTGAGCGCCCGT
66 GCAGAGGGGACCAG-GTCGATCCCTGGCTTACACATCCTGCCTCTCTGACCGACTGAGCGACCGC
* *
1604489 ACGCTCATTTCATGGGTTGCCGTGGGCATACGGAGTTCATC
130 ACGCTCATTTCATGAGTTGCCGTAGGCATACGGAGTTCATC
* * * *
1604530 CCCAGTCTAAGATCGGATCGAACTGAGGGTTGTAGCAGCAAGACCAACTGCAGGATCGGCAGCAT
1 CCCAATCTAAGATCGGATCGAACTAAGGGTTGTAGCAGCAAGACCAACAGCAGGATCGACAGCAT
* * * * *
1604595 GCAGGGGGGACCAGGTCGATCCCTGGCTTGCATATTCTGCCTCTCTGACTGACTGAGCGACCGCA
66 GCAGAGGGGACCAGGTCGATCCCTGGCTTACACATCCTGCCTCTCTGACCGACTGAGCGACCGCA
* * * *
1604660 CGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCAT
131 CGCTCATTTCATGAGTTGCCGTAGGCATACGGAGTTCAT
1604699 TCCACATCTA
Statistics
Matches: 139, Mismatches: 28, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
169 57 0.41
170 81 0.58
171 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (170 bp):
CCCAATCTAAGATCGGATCGAACTAAGGGTTGTAGCAGCAAGACCAACAGCAGGATCGACAGCAT
GCAGAGGGGACCAGGTCGATCCCTGGCTTACACATCCTGCCTCTCTGACCGACTGAGCGACCGCA
CGCTCATTTCATGAGTTGCCGTAGGCATACGGAGTTCATC
Found at i:1604689 original size:170 final size:170
Alignment explanation
Indices: 1604318--1604710 Score: 427
Period size: 169 Copynumber: 2.3 Consensus size: 170
1604308 CTAAGTGCCT
* * * * *
1604318 GCACGCTCATTTTGTGGGTTGACTTAGGCATACGTAGTGC-GCTCCCAATCTAAGATCGGATCGG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCCAATCTAAGATCGGATCGA
* * * ** *
1604382 ACTAAGGGTTGTGGCAGCAGGACCCACAGTGGGATCGACAGCATGTAAGGGGACCGAGTCGATCC
66 ACTAAGGGTTGTAGCAGCAAGACCAACAGCAGGATCGACAGCATGCAAGGGGACCGAGTCGATCC
* * * * *
1604447 CTGGCTTACGCCTCCTGCCTCTCTGGCCGGCTGAGCGCCC
131 CTGGCTTACACATCCTGCCTCTCTGACCGACTGAGCGACC
* * * * * *
1604487 GTACGCTCATTTCATGGGTTGCCGTGGGCATACGGAGTTCATC-CCCAGTCTAAGATCGGATCGA
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCCAATCTAAGATCGGATCGA
* * * *
1604551 ACTGAGGGTTGTAGCAGCAAGACCAACTGCAGGATCGGCAGCATGCAGGGGGGACC-AGGTCGAT
66 ACTAAGGGTTGTAGCAGCAAGACCAACAGCAGGATCGACAGCATGCA-AGGGGACCGA-GTCGAT
* * * *
1604615 CCCTGGCTTGCATATTCTGCCTCTCTGACTGACTGAGCGACC
129 CCCTGGCTTACACATCCTGCCTCTCTGACCGACTGAGCGACC
* * *
1604657 GCACGCTCGTTTCGTGAGTTGGCTTAGGCATACGGAGTTCAT-T-CCACATCTAAG
1 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCCA-ATCTAAG
1604711 CCCCAGTCAG
Statistics
Matches: 181, Mismatches: 38, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
169 93 0.51
170 88 0.49
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (170 bp):
GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCTCCCAATCTAAGATCGGATCGA
ACTAAGGGTTGTAGCAGCAAGACCAACAGCAGGATCGACAGCATGCAAGGGGACCGAGTCGATCC
CTGGCTTACACATCCTGCCTCTCTGACCGACTGAGCGACC
Found at i:1605547 original size:13 final size:13
Alignment explanation
Indices: 1605529--1605553 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1605519 ATAGTCGATG
1605529 CATGTGCCATCAC
1 CATGTGCCATCAC
1605542 CATGTGCCATCA
1 CATGTGCCATCA
1605554 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1606445 original size:26 final size:26
Alignment explanation
Indices: 1606416--1606468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1606406 GTTGACTTAG
1606416 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
1606442 GCATACTGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1606468 G
1 G
1606469 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1606604 original size:195 final size:196
Alignment explanation
Indices: 1606301--1606718 Score: 547
Period size: 195 Copynumber: 2.1 Consensus size: 196
1606291 TTATAGCAGC
* * ** * *
1606301 AGGACTCGCAGCGGGATCGATAGCACGCAGAAGGGATCGGGTCGATCCTCGACTTGCGCATCCTG
1 AGGACTAGCAGCAGGATCGGCAGCACGCAGAAGGGATCGGGTCCATCCTCGACTTACGCATCCTG
* * ** *
1606366 CCTCTCTGGCCGGTTGAGCGCCCTTACGCTCATTACGTGGGTTGACTTAGGCATACGGAGTTCAT
66 CCTCTCTGGCAGGCTGAGCGCCCGGACGCTCATTACATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
1606431 CCCCAATCTAAGCATACTGAGTTCATTCCCAATCTAAGATCGGAT-TGGATCGAGGGTTACGATA
131 CCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGG-CCGAGGGTTACGACA
1606495 GT
195 GT
*
1606497 AGGACTAGCAGCAGGATCGGCAGCACGCAG-GGAGGATCGGG-CCATCCTCGACTTACGCATCCT
1 AGGACTAGCAGCAGGATCGGCAGCACGCAGAAG-GGATCGGGTCCATCCTCGACTTACGCATCCT
* ** *
1606560 GCCTCTTTGGCAGGCTGAGCTTCCGGACGCTCGGTT-CATGGGTTGACTTAGGCATACGGAGTTC
65 GCCTCTCTGGCAGGCTGAGCGCCCGGACGCTC-ATTACATGGGTTGACTTAGGCATACGGAGTTC
* *
1606624 ATCCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTACGATCGGATCAGGCCGAGGGTTACGAC
129 ATCCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGGCCGAGGGTTACGAC
1606689 AGT
194 AGT
* * * *
1606692 AGGACCAGCAACAGAATCAGCAGCACG
1 AGGACTAGCAGCAGGATCGGCAGCACG
1606719 TATGGGGTGA
Statistics
Matches: 193, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
195 155 0.80
196 38 0.20
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (196 bp):
AGGACTAGCAGCAGGATCGGCAGCACGCAGAAGGGATCGGGTCCATCCTCGACTTACGCATCCTG
CCTCTCTGGCAGGCTGAGCGCCCGGACGCTCATTACATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGGCCGAGGGTTACGACAG
T
Found at i:1606642 original size:26 final size:26
Alignment explanation
Indices: 1606611--1606661 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1606601 GTTGACTTAG
*
1606611 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1606637 GCATACGGAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
1606662 CGATCGGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1608812 original size:26 final size:26
Alignment explanation
Indices: 1608776--1608828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1608766 GTTGACTTAG
*
1608776 GCATACGGAGTCCCTTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
1608802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
1608828 G
1 G
1608829 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:1609489 original size:22 final size:22
Alignment explanation
Indices: 1609463--1609535 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
1609453 AAGGGCAGTC
1609463 TGTGCCAATGATGGTCAATGCA
1 TGTGCCAATGATGGTCAATGCA
** * *
1609485 TGTGCCATAACCATCG-CCAT-CA
1 TGTGCC--AATGATGGTCAATGCA
* *
1609507 TGTGCCGATGATGGTCGATGCA
1 TGTGCCAATGATGGTCAATGCA
1609529 TGTGCCA
1 TGTGCCA
1609536 TCACCATACG
Statistics
Matches: 37, Mismatches: 10, Indels: 8
0.67 0.18 0.15
Matches are distributed among these distances:
20 4 0.11
21 3 0.08
22 22 0.59
23 3 0.08
24 5 0.14
ACGTcount: A:0.23, C:0.25, G:0.26, T:0.26
Consensus pattern (22 bp):
TGTGCCAATGATGGTCAATGCA
Found at i:1609518 original size:44 final size:45
Alignment explanation
Indices: 1609463--1609554 Score: 150
Period size: 44 Copynumber: 2.1 Consensus size: 45
1609453 AAGGGCAGTC
1609463 TGTGCCAATGATGGTCAATGCATGTGCCATAACCAT-CGCCATCA
1 TGTGCCAATGATGGTCAATGCATGTGCCATAACCATACGCCATCA
* * *
1609507 TGTGCCGATGATGGTCGATGCATGTGCCATCACCATACGCCATCA
1 TGTGCCAATGATGGTCAATGCATGTGCCATAACCATACGCCATCA
1609552 TGT
1 TGT
1609555 CTAAGACCCA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
44 33 0.75
45 11 0.25
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (45 bp):
TGTGCCAATGATGGTCAATGCATGTGCCATAACCATACGCCATCA
Found at i:1610472 original size:26 final size:26
Alignment explanation
Indices: 1610436--1610488 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1610426 CACTCCCAAG
*
1610436 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
1610462 GCATATAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1610488 G
1 G
1610489 ATCGAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1611061 original size:13 final size:13
Alignment explanation
Indices: 1611040--1611077 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
1611030 ATGGTCGATG
*
1611040 CATGTGCCATCAC
1 CATGCGCCATCAC
1611053 CATGCGCCATCAC
1 CATGCGCCATCAC
1611066 CATGCGCCATCA
1 CATGCGCCATCA
1611078 TGTGCCATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.42, G:0.16, T:0.18
Consensus pattern (13 bp):
CATGCGCCATCAC
Found at i:1613924 original size:162 final size:153
Alignment explanation
Indices: 1613756--1614260 Score: 440
Period size: 157 Copynumber: 3.2 Consensus size: 153
1613746 GCACCTGCAC
**
1613756 GCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCGTAA-GGAGTTCAA
1 GCTCATTTCATGGG-TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCCCAACGGA--TCAA
* * **
1613820 -TCCCAGTCTA-TGATCGAATCGATAGCAGCATGCAGAGGGGGATTGGTTCGATCCTCAGCTTGT
63 GACCC-G--TAGTGA--G-ATCGATAGCA-C--GCAGAGAGGGATTGGGCCGATCCTCAGCTTGT
* * *
1613883 GCATCCTGCCTCTCCGGTCGGTTGAGTGCCCGCAT
119 GCATCCTACCTCTCCAGTCGGCTGAGTGCCCGCAT
* * * *
1613918 GCTCATTTCGTGGGATGACTTAGGCAAATGGAGTTCATTCTCGGTCTAAGCCCCAATCGGATCAA
1 GCTCATTTCATGGG-TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-CCCAA-CGGATCAA
* *
1613983 GGGACCCGTAGTGAGATCGGTAGCACGTAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCT
63 --GACCCGTAGTGAGATCGATAGCACGCAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCT
*
1614048 ACCTCTCTAGTCGGCTGAGTGCCCGCAT
126 ACCTCTCCAGTCGGCTGAGTGCCCGCAT
** * * *
1614076 GCTTGTTTCATGGGTGACTTAGGCATATGAAGTTCATTCCCTGTCTAAGCCCCAATCGGATTGAG
1 GCTCATTTCATGGGTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-CCCAA-CGGA-TCA-
* * * * * * * * * *
1614141 GGACCTGTAGCGAGATTGGTAGCATGCAGGGAGGGATTGGGCCGATCCTCGGCTTGTGCATTCTG
62 AGACCCGTAGTGAGATCGATAGCACGCAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCTA
* * * * * * * *
1614206 GCTTTTCGGCCGGTTGAGCGCCCGCAC
127 CCTCTCCAGTCGGCTGAGTGCCCGCAT
1614233 GCTCATTTCATGGGTTGACTTAGGCATA
1 GCTCATTTCATGGG-TGACTTAGGCATA
1614261 CATAGTGCAT
Statistics
Matches: 287, Mismatches: 46, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
157 127 0.44
158 85 0.30
160 1 0.00
161 9 0.03
162 46 0.16
163 9 0.03
164 3 0.01
165 4 0.01
166 3 0.01
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (153 bp):
GCTCATTTCATGGGTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCCCAACGGATCAAGAC
CCGTAGTGAGATCGATAGCACGCAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCTACCTC
TCCAGTCGGCTGAGTGCCCGCAT
Found at i:1614061 original size:158 final size:156
Alignment explanation
Indices: 1613846--1614279 Score: 521
Period size: 157 Copynumber: 2.8 Consensus size: 156
1613836 AATCGATAGC
* * ** *
1613846 AGCATGCAGAGGGGGATTGGTTCGATCCTCAGCTTGTGCATCCTGCCTCTCCGGTCGGTTGAGTG
1 AGCACGCAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCTGCCTCTCTGGTCGGTTGAGTG
*
1613911 CCCGCATGCTCATTTCGTGGGATGACTTAGGCAAATGGAGTTCATTCTCGGTCTAAGCCCCAATC
66 CCCGCATGCTCATTTCATGGG-TGACTTAGGCAAAT-GAGTTCATTCTCGGTCTAAGCCCCAATC
*
1613976 GGATCAAGGGACCCGTAGTGAGATCGGT
129 GGATCAAGGGACCCGTAGCGAGATCGGT
* * * *
1614004 AGCACGTAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCTACCTCTCTAGTCGGCTGAGTG
1 AGCACGCAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCTGCCTCTCTGGTCGGTTGAGTG
** * * *
1614069 CCCGCATGCTTGTTTCATGGGTGACTTAGGCATATGAAGTTCATTCCCTGTCTAAGCCCCAATCG
66 CCCGCATGCTCATTTCATGGGTGACTTAGGCAAATG-AGTTCATTCTCGGTCTAAGCCCCAATCG
** * *
1614134 GATTGAGGGACCTGTAGCGAGATTGGT
130 GATCAAGGGACCCGTAGCGAGATCGGT
* * * * * * * *
1614161 AGCATGCAGGGAGGGATTGGGCCGATCCTCGGCTTGTGCATTCTGGCT-TTTCGGCCGGTTGAGC
1 AGCACGCAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCTGCCTCTCT-GGTCGGTTGAGT
* *
1614225 GCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAT-AGTGCATTCTCGGTCT
65 GCCCGCATGCTCATTTCATGGG-TGACTTAGGCA-A-ATGAGTTCATTCTCGGTCT
1614280 CGACCAACCA
Statistics
Matches: 232, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
156 3 0.01
157 129 0.56
158 98 0.42
160 2 0.01
ACGTcount: A:0.18, C:0.25, G:0.30, T:0.27
Consensus pattern (156 bp):
AGCACGCAGAGAGGGATTGGGCCGATCCTCAGCTTGTGCATCCTGCCTCTCTGGTCGGTTGAGTG
CCCGCATGCTCATTTCATGGGTGACTTAGGCAAATGAGTTCATTCTCGGTCTAAGCCCCAATCGG
ATCAAGGGACCCGTAGCGAGATCGGT
Found at i:1614568 original size:45 final size:45
Alignment explanation
Indices: 1614421--1614587 Score: 156
Period size: 45 Copynumber: 3.7 Consensus size: 45
1614411 GGGCCGACCG
* *** *
1614421 GGGCTCAGCATGTGCCGATGGTGGTCGAGGCAA-CTATTCGCACCA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCT-GCACTA
* * * **
1614466 CGGCCCAGCATGTGCCGATGGTGTTCGATGCAACCGCCCACACTA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACTA
** * *
1614511 GGGTTCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGCACTA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACTA
* ** *
1614556 GGGCCCAGCTTGTGTTGATGGCGGTCGAGGCA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCA
1614588 GGTGCCCGTA
Statistics
Matches: 96, Mismatches: 25, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
45 95 0.99
46 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.34, T:0.21
Consensus pattern (45 bp):
GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACTA
Found at i:1615696 original size:196 final size:195
Alignment explanation
Indices: 1615344--1615722 Score: 525
Period size: 196 Copynumber: 1.9 Consensus size: 195
1615334 CGTAGTGCAC
* * *
1615344 TCCCAATCTAAGATCGAACTAGATCGAGGGTTACGGTAGTAGGACCCATAGCAGGATCGATAGCA
1 TCCCAATCTAAGATCGAACCAGATCGAGGGTTACGATAGTAGGACCCATAGCAGGATCGACAGCA
* * * * *
1615409 CGCAGAGGGGATCAGGTCAATCCACGGCTTGCGCATCTTACCTCTCTGGTCGACTGAGCGCCCGC
66 CACAGAGAGGATCAGGTCAATCCACGACTTGCGCATCTTACCTCTCCGGTCGACTGAGCGCCCAC
1615474 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGCGTATGAGTTCA
131 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCGTATGAGTTCA
1615538 T
195 T
*
1615539 TCCCAGTCTAAGATCGAACCAGATCGAGGGTTACGATAGTAGGA-CCAGTAGCAGGATCGACAGC
1 TCCCAATCTAAGATCGAACCAGATCGAGGGTTACGATAGTAGGACCCA-TAGCAGGATCGACAGC
* * * *
1615603 ACACATG-GAAGGATCGGGTCGATCCCCGACTTGCGCAT-TCTACCTCTCCGGTCGACTGGGC-C
65 ACACA-GAG-AGGATCAGGTCAATCCACGACTTGCGCATCT-TACCTCTCCGGTCGACTGAGCGC
* * *
1615665 CCTACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
127 CC-ACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
1615723 CCCAACTGGA
Statistics
Matches: 162, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
194 3 0.02
195 68 0.42
196 91 0.56
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Consensus pattern (195 bp):
TCCCAATCTAAGATCGAACCAGATCGAGGGTTACGATAGTAGGACCCATAGCAGGATCGACAGCA
CACAGAGAGGATCAGGTCAATCCACGACTTGCGCATCTTACCTCTCCGGTCGACTGAGCGCCCAC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCGTATGAGTTCAT
Found at i:1615891 original size:26 final size:26
Alignment explanation
Indices: 1615853--1615906 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
1615843 GGTTGACTTG
*
1615853 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
*
1615879 AGCATACGAAGTTCATTCCTAGTCTA
1 AGCATACGAAGTTCATTCCCAGTCTA
1615905 AG
1 AG
1615907 ATCCAACCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (26 bp):
AGCATACGAAGTTCATTCCCAGTCTA
Found at i:1618819 original size:9 final size:9
Alignment explanation
Indices: 1618805--1618833 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
1618795 TCACCCTTGG
1618805 AGGTGCTAA
1 AGGTGCTAA
1618814 AGGTGCTAA
1 AGGTGCTAA
1618823 AGGTGCTAA
1 AGGTGCTAA
1618832 AG
1 AG
1618834 ACCTTTAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.34, T:0.21
Consensus pattern (9 bp):
AGGTGCTAA
Found at i:1622646 original size:45 final size:44
Alignment explanation
Indices: 1622522--1622735 Score: 139
Period size: 45 Copynumber: 4.8 Consensus size: 44
1622512 GACCTGTGCC
* * * * * *
1622522 GATGGTGGTCAAGGCAACTGCCCGCACCATGGCCCAGCATGTGCC
1 GATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCATCTTGTG-T
* * **
1622567 GATGGTGTTCGATGCAA-TCGCCTACA-CAAGGGGCCATCTTGTGT
1 GATGGTGGTCGAGGCAACT-GCCCGCACCAA-GGGCCATCTTGTGT
* * ** *
1622611 GGATGGTGGTCTAGGCAATTGCCCGCACCAAGGGCCAGAATT-TACT
1 -GATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCA-TCTTGT-GT
* ** *
1622657 GATGGTGATCGAGGCAACCACCTGCACC-AGGGCCATCTTGTGCT
1 GATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCATCTTGTG-T
* *
1622701 GATGGTGGTCGAGGCAAGTGCCCGTACCAAAGGGC
1 GATGGTGGTCGAGGCAACTGCCCGCACC-AAGGGC
1622736 AACCTGTGCT
Statistics
Matches: 125, Mismatches: 33, Indels: 21
0.70 0.18 0.12
Matches are distributed among these distances:
43 2 0.02
44 34 0.27
45 77 0.62
46 12 0.10
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.20
Consensus pattern (44 bp):
GATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCATCTTGTGT
Found at i:1622716 original size:89 final size:90
Alignment explanation
Indices: 1622516--1622735 Score: 246
Period size: 90 Copynumber: 2.4 Consensus size: 90
1622506 AGGCTCGACC
* * * * * * *
1622516 TGTGCCGATGGTGGTCAAGGCAACTGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATG
1 TGTGCTGATGGTGGTCAAGGCAACTGCCCGCACCAAGGGCCAGAATGTACCGATGGTGATCGAGG
* *
1622581 CAATCGCCTACACAAGGGGCCATCT
66 CAACCACCTACACAAGGGGCCATCT
* * * *
1622606 TGTG-TGGATGGTGGTCTAGGCAATTGCCCGCACCAAGGGCCAGAATTTACTGATGGTGATCGAG
1 TGTGCT-GATGGTGGTCAAGGCAACTGCCCGCACCAAGGGCCAGAATGTACCGATGGTGATCGAG
* *
1622670 GCAACCACCTGCACCA-GGGCCATCT
65 GCAACCACCTACACAAGGGGCCATCT
* * *
1622695 TGTGCTGATGGTGGTCGAGGCAAGTGCCCGTACCAAAGGGC
1 TGTGCTGATGGTGGTCAAGGCAACTGCCCGCACC-AAGGGC
1622736 AACCTGTGCT
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
89 38 0.35
90 71 0.65
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.20
Consensus pattern (90 bp):
TGTGCTGATGGTGGTCAAGGCAACTGCCCGCACCAAGGGCCAGAATGTACCGATGGTGATCGAGG
CAACCACCTACACAAGGGGCCATCT
Found at i:1622781 original size:13 final size:13
Alignment explanation
Indices: 1622760--1622807 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
1622750 ATGGTCAATG
*
1622760 CATGTGCCATCAC
1 CATGCGCCATCAC
1622773 CATGCGCCAT---
1 CATGCGCCATCAC
*
1622783 CATGTGCCATCAC
1 CATGCGCCATCAC
1622796 CATGCGCCATCA
1 CATGCGCCATCA
1622808 TGTGCCATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
10 9 0.31
13 20 0.69
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.21
Consensus pattern (13 bp):
CATGCGCCATCAC
Found at i:1622787 original size:23 final size:23
Alignment explanation
Indices: 1622760--1622815 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
1622750 ATGGTCAATG
1622760 CATGTGCCATCACCATGCGCCAT
1 CATGTGCCATCACCATGCGCCAT
1622783 CATGTGCCATCACCATGCGCCAT
1 CATGTGCCATCACCATGCGCCAT
1622806 CATGTGCCAT
1 CATGTGCCAT
1622816 TGATGGTCGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.38, G:0.18, T:0.23
Consensus pattern (23 bp):
CATGTGCCATCACCATGCGCCAT
Found at i:1623711 original size:26 final size:26
Alignment explanation
Indices: 1623682--1623735 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
1623672 GTTTACTTAG
1623682 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1623708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1623734 GC
1 GC
1623736 TCAGATCGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1625634 original size:26 final size:26
Alignment explanation
Indices: 1625604--1625656 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1625594 GTTGACTTAG
1625604 GCATAAGGAGTTCATCCCCAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* * *
1625630 GCATACGGAGTTCATTCCCATTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
1625656 G
1 G
1625657 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:1631506 original size:26 final size:26
Alignment explanation
Indices: 1631466--1631549 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
1631456 TATGGATTGA
1631466 CTAAGGCATACGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
* *
1631493 CTAAGCATATGGAGTTCATTCCTAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
*
1631519 CTAAGCATACAGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
1631545 CTAAG
1 CTAAG
1631550 ATCAGACCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
26 48 0.92
27 4 0.08
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:1633001 original size:26 final size:26
Alignment explanation
Indices: 1632965--1633017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1632955 GTTAACTTAG
* *
1632965 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
1632991 GCATACGGAGTTCATTCCAAATCTAA
1 GCATACGGAGTTCATTCCAAATCTAA
1633017 G
1 G
1633018 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAATCTAA
Found at i:1633665 original size:21 final size:21
Alignment explanation
Indices: 1633632--1633681 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
1633622 AAGCCCCAGG
1633632 TGGACCGAAGGTTATGGCAGC
1 TGGACCGAAGGTTATGGCAGC
* * *
1633653 TGGATCGAGGGTTGTGGCAGC
1 TGGACCGAAGGTTATGGCAGC
*
1633674 GGGACCGA
1 TGGACCGA
1633682 CAGTACGCAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.18, G:0.44, T:0.18
Consensus pattern (21 bp):
TGGACCGAAGGTTATGGCAGC
Done.