Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 15 of 120
Found at i:1634258 original size:45 final size:44
Alignment explanation
Indices: 1634110--1634355 Score: 156
Period size: 45 Copynumber: 5.5 Consensus size: 44
1634100 TCGGGGCTTG
* ** **
1634110 GCATGTGCCGATGGTGGTCGAGGCAAGC-GCCCGTACCGTGACCCA
1 GCATGTGCCGATGGTGGTCGAGGCAA-CTGCCCGCACCAAG-GGCA
* * ** *
1634155 GCATGTGCCGATGGTGTTCGATGCAACCACCTGCACC-AGTGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAG-GGC-A
* * * *
1634200 TCTTGTGTCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGTCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGG-CA
* * * * * *
1634245 GCATGTACTGATGGTGATCAAGGCAACCGCCTGCACC-AGGGCCGA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGG-C-A
* * * * *
1634290 GCTTGTGCCAATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGGCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACC-AAGGGCA
* *
1634335 GCCTGTGCCGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
1634356 TGCATGTGCC
Statistics
Matches: 150, Mismatches: 44, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
44 8 0.05
45 134 0.89
46 4 0.03
47 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCA
Found at i:1634271 original size:90 final size:90
Alignment explanation
Indices: 1634153--1634347 Score: 223
Period size: 90 Copynumber: 2.2 Consensus size: 90
1634143 TACCGTGACC
* * * * * * * *
1634153 CAGCATGTGCCGATGGTGTTCGATGCAACCACCTGCACCAGTGG-CAATCTTGTGTCGATGGTGG
1 CAGCATGTACCGATGGTGATCAAGGCAACCACCTGCACCAG-GGCCAAGCTTGTGCCAATGGCGG
*
1634217 TCGAGGCAATTGCCCGCACC-AAGGG
65 TCGAGGCAAGTGCCCGCACCAAAGGG
* * *
1634242 TCAGCATGTACTGATGGTGATCAAGGCAACCGCCTGCACCAGGGCCGAGCTTGTGCCAATGGCGG
1 -CAGCATGTACCGATGGTGATCAAGGCAACCACCTGCACCAGGGCCAAGCTTGTGCCAATGGCGG
*
1634307 TCGAGGCAAGTGCCCGTACCAAAGGG
65 TCGAGGCAAGTGCCCGCACCAAAGGG
* *
1634333 CAGCCTGTGCCGATG
1 CAGCATGTACCGATG
1634348 ATGGTCGATG
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
89 2 0.02
90 80 0.92
91 5 0.06
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.19
Consensus pattern (90 bp):
CAGCATGTACCGATGGTGATCAAGGCAACCACCTGCACCAGGGCCAAGCTTGTGCCAATGGCGGT
CGAGGCAAGTGCCCGCACCAAAGGG
Found at i:1636785 original size:26 final size:26
Alignment explanation
Indices: 1636755--1636804 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1636745 GTTGACTTAG
1636755 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
1636781 GCATATGGAGTTCATTTCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
1636805 CAGATCGGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1638259 original size:26 final size:26
Alignment explanation
Indices: 1638223--1638274 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1638213 TTGACTTAGT
*
1638223 CATACGGAGTTCA-TCCCTAGTTTAAG
1 CATACGGAGTTCACTCCC-AGTCTAAG
*
1638249 CATATGGAGTTCACTCCCAGTCTAAG
1 CATACGGAGTTCACTCCCAGTCTAAG
1638275 ATCAAACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAGTCTAAG
Found at i:1639121 original size:12 final size:12
Alignment explanation
Indices: 1639104--1639134 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
1639094 GTGCTGGTAC
1639104 TTGGCCCTTATA
1 TTGGCCCTTATA
1639116 TTGGCCCTTATA
1 TTGGCCCTTATA
1639128 TTGGCCC
1 TTGGCCC
1639135 CCTATCCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.39
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:1640166 original size:26 final size:26
Alignment explanation
Indices: 1640137--1640189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1640127 GTTGACTTAG
* *
1640137 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1640163 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1640189 G
1 G
1640190 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1640707 original size:45 final size:45
Alignment explanation
Indices: 1640628--1640776 Score: 174
Period size: 45 Copynumber: 3.3 Consensus size: 45
1640618 GATCGAGGCT
* *
1640628 CAGCATGTGCCGATGGTGGTC-AAGACAACTGCCCGCACCACGGCC
1 CAGCATGTGCCGATGGTGGTCGAAG-CAACCGCCCGCACCAGGGCC
* * * *
1640673 CAGCATGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGC
1 CAGCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAGGGCC
* * * *
1640718 CATCTTGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC
1 CAGCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAGGGCC
* *
1640763 CAGCTTGTGTCGAT
1 CAGCATGTGCCGAT
1640777 CACAGGCGGG
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 85 0.98
46 2 0.02
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (45 bp):
CAGCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAGGGCC
Found at i:1641592 original size:26 final size:26
Alignment explanation
Indices: 1641563--1641615 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1641553 GTTGACTTAG
1641563 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
** *
1641589 GCATATGGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1641615 G
1 G
1641616 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1643412 original size:26 final size:26
Alignment explanation
Indices: 1643382--1643433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1643372 GTTGACTTAG
1643382 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
1643408 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1643434 AATCAGATCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1644377 original size:25 final size:26
Alignment explanation
Indices: 1644348--1644399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1644338 GTTAACTTAG
1644348 GCATATGG-GTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1644373 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1644399 G
1 G
1644400 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1644752 original size:612 final size:612
Alignment explanation
Indices: 1643573--1644767 Score: 1465
Period size: 611 Copynumber: 2.0 Consensus size: 612
1643563 CATGGGTTGG
* *
1643573 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCAAAGGTTGTGGCAACGGGAC
1 CTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAACCAGACCAAAGGTTGTGGCAACGGGAC
* *** *
1643638 CGACATCACGCAGAGGGAGACCAGGCCGATTTTCAGCTTGCGCATTATGCCTCTCCGGCCTACTC
66 CGACAGCACGCAGAGGGAGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTC
* * ** * * *
1643703 AGCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGTATACGGAGTTCATTCGCAGTCTATGCATA
131 AGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
1643768 CGGAGTTCATTCCGATCTAAGATCGGACCGACAGCAGCATGCAGAAGGGGATCGGGCCGATCCTT
196 CGGAGTTCATTCCCATCTAAGATCGGACCGACAGCAGCACGCAGAAGGGGATCAGGCCGATCCTC
* * * ** * *
1643833 GACTTGCGCATCCTACCTCTCCGGCTGGTTGAGTACCTGCACGCTCGTTTCGTGGGTTGACTTAG
261 GACTTGCACATCCTACCTCTCCGACCGACTGAGTACCTACACGCTCGTTTCGTGGGTTGACTTAA
* * * *
1643898 GCATACAAAGTTCATTCCCGATCTAAGCCCCAACCGGACCGAGGGACCCGTAGCGAGATCGACAG
326 GCATACAAAGTTCATTCCCGATCTAAGCCCCAACCAGAACGAGGGACCCGTAACGAGATCAACAG
* * * * * * * * **
1643963 CACGTATAGAGGGACCGGGCCAATCTTGGGCTTGCGTATGTTGGCTCTTCGGCCTGCTGAGTGCC
391 CACGCAGAGAGGGACCGGGCCAATCCTCGACATGCGCATGTTGGCTCTCCAACCTGCTGAGTGCC
* *
1644028 CGCACGCCATTTCATGGGTTGACTTAGGCATACGTAGTGCATTCCCAGTCTTGACCAACCAAGGG
456 CGCACGCCATTTCATAGGTTGACTTAGGCATACGTAGTGCATTCCCAGTCTCGACCAACCAAGGG
* * * * *
1644093 CCAGAGGCTATCGATGGTGTTTGGGGTAACAATCGAGGCAGACCAGCAGCGGGATCCTTGGTCTG
521 CCAGAGGCTATCAACGGCGTTTGGGGCAACAACCGAGGCAGACCAGCAGCGGGATCCTTGGTCTG
1644158 CTCGTGCATCCCGCCTCCAGCAGTCGA
586 CTCGTGCATCCCGCCTCCAGCAGTCGA
* * *
1644185 CTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAACCGGACCGAAGGTTGTGGCAGCGGGAC
1 CTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAACCAGACCAAAGGTTGTGGCAACGGGAC
* * * * * * * *
1644250 C-AGCAGCATGCAGATTGG-GATCGGGCCGATCCCCGGCTTG-GGATTATGCCTCTCCGGTCGGC
66 CGA-CAGCACGCAGA-GGGAGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGAC
* *
1644312 TCAGCACCCGCATGCTCGTTTCATGGGTTAACTTAGGCATATGG-GTTCATTCCCAGTCTAAGCA
129 TCAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * ** * *
1644376 TATGGAGTTCATTCCCAGTCTAAGATTGGACTGGTAGTAGCACGCAGAGGGGGATCAGGCCGATC
194 TACGGAGTTCATTCCCA-TCTAAGATCGGACCGACAGCAGCACGCAGAAGGGGATCAGGCCGATC
* ** * *
1644441 CTCGGCTTGCACATTTTGCCTCTCCGACCGACTGAGTGTA-C-ACACGCTTGTTTCGTGGGTTGA
258 CTCGACTTGCACATCCTACCTCTCCGACCGACTGA--GTACCTACACGCTCGTTTCGTGGGTTGA
* * * *
1644504 CTTAAGCATACGAAA-TTCATTCTCGATCTAAGTCCTAATCAGAACGAGGGACCCGTAAC-AGGA
321 CTTAAGCATAC-AAAGTTCATTCCCGATCTAAGCCCCAACCAGAACGAGGGACCCGTAACGA-GA
* * * * *
1644567 TCAATAGCATGCAGAGGGGGACCGGGCCGATCCTCGACATGCGCAT-TCTGGCTCTCCAATC-GA
384 TCAACAGCACGCAGAGAGGGACCGGGCCAATCCTCGACATGCGCATGT-TGGCTCTCCAACCTG-
* *
1644630 CTGAGTGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGTAGTGCATTCTCGGTCTCGAC
447 CTGAGTGCCCGCACGC-CATTTCATAGGTTGACTTAGGCATACGTAGTGCATTCCCAGTCTCGAC
* **
1644695 CAACCAAGGGCTAGAGGCTATCAACGGCGTTTGGGGCAACAACCGAGGGGGACCAGCAGCGGGAT
511 CAACCAAGGGCCAGAGGCTATCAACGGCGTTTGGGGCAACAACCGAGGCAGACCAGCAGCGGGAT
1644760 CCTTGGTC
576 CCTTGGTC
1644768 CCATTTACAA
Statistics
Matches: 488, Mismatches: 85, Indels: 20
0.82 0.14 0.03
Matches are distributed among these distances:
610 36 0.07
611 248 0.51
612 199 0.41
613 5 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (612 bp):
CTTAGGCATACGGAGTTCATTCCACGTCTAAGCCCCAACCAGACCAAAGGTTGTGGCAACGGGAC
CGACAGCACGCAGAGGGAGACCAGGCCGATCCCCAGCTTGCGCATTATGCCTCTCCGGCCGACTC
AGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCATCTAAGATCGGACCGACAGCAGCACGCAGAAGGGGATCAGGCCGATCCTC
GACTTGCACATCCTACCTCTCCGACCGACTGAGTACCTACACGCTCGTTTCGTGGGTTGACTTAA
GCATACAAAGTTCATTCCCGATCTAAGCCCCAACCAGAACGAGGGACCCGTAACGAGATCAACAG
CACGCAGAGAGGGACCGGGCCAATCCTCGACATGCGCATGTTGGCTCTCCAACCTGCTGAGTGCC
CGCACGCCATTTCATAGGTTGACTTAGGCATACGTAGTGCATTCCCAGTCTCGACCAACCAAGGG
CCAGAGGCTATCAACGGCGTTTGGGGCAACAACCGAGGCAGACCAGCAGCGGGATCCTTGGTCTG
CTCGTGCATCCCGCCTCCAGCAGTCGA
Found at i:1644885 original size:18 final size:17
Alignment explanation
Indices: 1644864--1644899 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
1644854 AAAGAGAGAT
1644864 AGAGAGAGAAAGTGTAAG
1 AGAGAGAGAAAGTG-AAG
*
1644882 AGAGAGAGAGAGTGAAG
1 AGAGAGAGAAAGTGAAG
1644899 A
1 A
1644900 ATTTGCCTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.50, C:0.00, G:0.42, T:0.08
Consensus pattern (17 bp):
AGAGAGAGAAAGTGAAG
Found at i:1646199 original size:45 final size:45
Alignment explanation
Indices: 1646131--1646228 Score: 151
Period size: 45 Copynumber: 2.2 Consensus size: 45
1646121 GGCTCGACAA
* *
1646131 GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCATCTT
1 GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCTT
* * *
1646176 GTGTCGATGGTGTTCGGGGCAACCGCCCGCACCAAGGCCCAGCTT
1 GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCTT
1646221 GTGCCGAT
1 GTGCCGAT
1646229 AAGTACCTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (45 bp):
GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCTT
Found at i:1647220 original size:26 final size:26
Alignment explanation
Indices: 1647170--1647222 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1647160 GTTGACTTAG
*
1647170 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTCACTCTAA
*
1647196 GCATATGGAGTTCATTCC-CACTCTAA
1 GCATACGGAGTTCA-TCCTCACTCTAA
1647222 G
1 G
1647223 ATGGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTCACTCTAA
Found at i:1647553 original size:26 final size:26
Alignment explanation
Indices: 1647523--1647575 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1647513 GTTAACTTAG
*
1647523 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
1647549 GCATATGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
1647575 G
1 G
1647576 ATCAAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:1648072 original size:45 final size:45
Alignment explanation
Indices: 1648016--1648128 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 45
1648006 AGGCTCAGCA
* *
1648016 TGTGCCGATGGTGGTCGAGGCAACCGC-CTGCACCAGGGGCC-ATCT
1 TGTGCCAATGGTGGTCGAGGCAACCGCTC-GCACCA-GGGCCTAGCT
* *
1648061 TGTGCCAATGGTGGTTGAGGCAACCGCTCGCACTAGGGCCTAGCT
1 TGTGCCAATGGTGGTCGAGGCAACCGCTCGCACCAGGGCCTAGCT
* * *
1648106 TGTGCCATTGGCGATCGAGGCAA
1 TGTGCCAATGGTGGTCGAGGCAA
1648129 GTGCCAGTAC
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 5 0.09
45 52 0.90
46 1 0.02
ACGTcount: A:0.18, C:0.27, G:0.35, T:0.20
Consensus pattern (45 bp):
TGTGCCAATGGTGGTCGAGGCAACCGCTCGCACCAGGGCCTAGCT
Found at i:1648358 original size:26 final size:26
Alignment explanation
Indices: 1648329--1648381 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1648319 GTTGACTTAG
*
1648329 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1648355 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1648381 G
1 G
1648382 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1649409 original size:26 final size:26
Alignment explanation
Indices: 1649380--1649431 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
1649370 TTGACTTAGT
*
1649380 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
* * *
1649406 CATATGAATTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
1649432 ATCGGGCTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:1649470 original size:12 final size:12
Alignment explanation
Indices: 1649453--1649477 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1649443 TCAAGGGTTA
1649453 CGGTAGCAGGAC
1 CGGTAGCAGGAC
1649465 CGGTAGCAGGAC
1 CGGTAGCAGGAC
1649477 C
1 C
1649478 AACAGTAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.40, T:0.08
Consensus pattern (12 bp):
CGGTAGCAGGAC
Found at i:1649777 original size:26 final size:26
Alignment explanation
Indices: 1649747--1649799 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1649737 GTTGACCTAG
1649747 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1649773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1649799 G
1 G
1649800 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1650086 original size:320 final size:320
Alignment explanation
Indices: 1649717--1650405 Score: 804
Period size: 320 Copynumber: 2.2 Consensus size: 320
1649707 CTGTTCAGTG
* * *
1649717 CCTGCACGCTCGTTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** * * *
1649782 GTTCATTCCCAGTCTAAGATCAGACCGACAGTAGCACATAGAGGGGGACCAGGTCGATCCTCGAC
66 GTACATTCCCAGTCTAAGATCAGACCAACAACAGCACACAGAGGGGGACCAGGCCAATCCTCGAC
* * ** * * * *
1649847 TTACGCATCCTACCTCTTCGACTGGTTGAGTGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCA
131 TTACGCATCCTACCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCA
* ** **
1649912 TACGGAGATCATTCCCGGTCTAAGCCCCAACCAAATCGAAAGACCTGCAGTGAGATCGGTAGCAC
196 TACGGAGATCATTCCCGATCTAAGCCCCAACCAAATCGAAAGACCCACAGTGAGATCGACAGCAC
** * * * * * * ** *
1649977 GTAGTGGGGGACTTAG-CCGATCCTCGGCTTGCTCATTTTGGCTCTCCAGTTGGCTGAGCA
261 ACAGAGGGGGA-TCAGACCGATCCTCGACTTACGCATTCTGGCTCTCCAGCCGACTGAGCA
* *
1650037 CCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGA
1 CCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * *
1650102 GTACTTTCCCAGTCTAAGATCAGACCAACAACAGCACGCAGAGGGGGATCAGGCCAATCCTTGGC
66 GTACATTCCCAGTCTAAGATCAGACCAACAACAGCACACAGAGGGGGACCAGGCCAATCCTCGAC
** * * *
1650167 TTGTGCATCCTGCCTCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTTGGCA
131 TTACGCATCCTACCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCA
* * * ** **
1650232 TATGGAGTTCATTCCTGATCTAAGCCCCAACCGGATCGAGGGACCCACAGTGAGATCGACAGCAC
196 TACGGAGATCATTCCCGATCTAAGCCCCAACCAAATCGAAAGACCCACAGTGAGATCGACAGCAC
* * **
1650297 ACAGAGGGGGATCGGATCGATCCTCGACTTACGCATTCTGGCTCTCTGGCCGACTGAGCA
261 ACAGAGGGGGATCAGACCGATCCTCGACTTACGCATTCTGGCTCTCCAGCCGACTGAGCA
* * * * *
1650357 CCCGCACACTTGTTTCATGCGTTGACTTAGGCATACGTAGTGCATTCCC
1 CCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
1650406 GATCTCGACC
Statistics
Matches: 305, Mismatches: 63, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
319 2 0.01
320 303 0.99
ACGTcount: A:0.22, C:0.28, G:0.26, T:0.25
Consensus pattern (320 bp):
CCTGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTACATTCCCAGTCTAAGATCAGACCAACAACAGCACACAGAGGGGGACCAGGCCAATCCTCGAC
TTACGCATCCTACCTCTCCGACCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCA
TACGGAGATCATTCCCGATCTAAGCCCCAACCAAATCGAAAGACCCACAGTGAGATCGACAGCAC
ACAGAGGGGGATCAGACCGATCCTCGACTTACGCATTCTGGCTCTCCAGCCGACTGAGCA
Found at i:1650096 original size:26 final size:26
Alignment explanation
Indices: 1650067--1650119 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1650057 GTTGACTTAG
*
1650067 GCATACGGAGT-TTATTCCCAGTCTAA
1 GCATACGGAGTACT-TTCCCAGTCTAA
*
1650093 GCATATGGAGTACTTTCCCAGTCTAA
1 GCATACGGAGTACTTTCCCAGTCTAA
1650119 G
1 G
1650120 ATCAGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTACTTTCCCAGTCTAA
Found at i:1651737 original size:26 final size:26
Alignment explanation
Indices: 1651708--1651759 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1651698 TTGACTTAAT
* *
1651708 CATACGGAGTTCATACCCAGTCTAAG
1 CATACGAAGTTCATACCCAGCCTAAG
*
1651734 CATACGAAGTTCATTCCCAGCCTAAG
1 CATACGAAGTTCATACCCAGCCTAAG
1651760 ATCGGGCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (26 bp):
CATACGAAGTTCATACCCAGCCTAAG
Found at i:1652105 original size:26 final size:26
Alignment explanation
Indices: 1652075--1652127 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1652065 GTTGACCTAG
1652075 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1652101 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1652127 G
1 G
1652128 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1652448 original size:320 final size:320
Alignment explanation
Indices: 1652048--1652721 Score: 760
Period size: 320 Copynumber: 2.1 Consensus size: 320
1652038 TTCAGTGCCT
* * * *
1652048 GCACGCTCGTTTCATGGGTTGACCTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTA
* * * ** * * * *
1652113 CATTCCCAGTCTAAGATCGGA-CTGACAGTAGCACATAGAGGGGGAGCAGGGCGATCCTCAGCTT
66 CATTCCCAATCTAAGATCAGACCAG-CAACAGCACACAGAGGGGGACCAGGCCAATCCTCAGCTT
* * * *
1652177 ACGCATCCTACCTCTTCGACTGGTTGAGTGC-CTGCACGCTCATTTCGTGGGTTGACTTAGGCAT
130 ACGCATCCTACCTCTCCGACCGGCTGAGCGCTC-GCACGCTCATTTCGTGGGTTGACTTAGGCAT
* * ** *
1652241 ACGAAGATCATTCCCGGTATAAGCCCTAACCAAATCGAAGGACCCATAGCGAGATCGGTAGCTCA
194 ACGAAGATCATTCCCGATATAAGCCCCAACCAAATCGAAGGACCCATAGCGAGATCGACAGCACA
* * ** * * ** * *
1652306 CAGTGGGGGA-CTTAACCGATCCTTGGCTTGCTCATTCTGGCTCTCCAGTTGGCTGAGCGCCC
259 CAGAGGGGGATC-GAACCGATCCTCAGCTTACCCATTCTGGCTCTCCAGCCGACTGAGCACCC
*
1652368 GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATATGGAGTA
1 GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTA
* * ** *
1652433 CTTTCCCAATCTAAGATCAGACCAGCAACAGCACGCAGAGGGGGACCAGGCCAATCCTTGGCTTG
66 CATTCCCAATCTAAGATCAGACCAGCAACAGCACACAGAGGGGGACCAGGCCAATCCTCAGCTTA
* * * * * *
1652498 TGCATCCTGCCTCTCCGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTTGGCATAT
131 CGCATCCTACCTCTCCGACCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
* * * ** * * * *
1652563 GAAGTTCATTCCTGATCTAAGCCCCAACCGGATCGAGGGACCCGTAGTGAGATCGACAGCACATA
196 GAAGATCATTCCCGATATAAGCCCCAACCAAATCGAAGGACCCATAGCGAGATCGACAGCACACA
* * **
1652628 GAGGGGGATCGGATCGATCCTCAGCTTACCCATTCTGGCTCTCTGGCCGACTGAGCACCC
261 GAGGGGGATCGAACCGATCCTCAGCTTACCCATTCTGGCTCTCCAGCCGACTGAGCACCC
* * *
1652688 GCACACTTATTTCATGCGTTGACTTAGGCATACG
1 GCACGCTTGTTTCATGGGTTGACTTAGGCATACG
1652722 TAATGCATTC
Statistics
Matches: 291, Mismatches: 60, Indels: 6
0.82 0.17 0.02
Matches are distributed among these distances:
320 287 0.99
321 4 0.01
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (320 bp):
GCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTA
CATTCCCAATCTAAGATCAGACCAGCAACAGCACACAGAGGGGGACCAGGCCAATCCTCAGCTTA
CGCATCCTACCTCTCCGACCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATAC
GAAGATCATTCCCGATATAAGCCCCAACCAAATCGAAGGACCCATAGCGAGATCGACAGCACACA
GAGGGGGATCGAACCGATCCTCAGCTTACCCATTCTGGCTCTCCAGCCGACTGAGCACCC
Found at i:1654064 original size:26 final size:26
Alignment explanation
Indices: 1654035--1654086 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1654025 TGGATTTAGT
1654035 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
*
1654061 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATCCCCAGTCTAAG
1654087 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAGTCTAAG
Found at i:1654429 original size:26 final size:26
Alignment explanation
Indices: 1654400--1654452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1654390 GTTGACTTAG
*
1654400 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1654426 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1654452 G
1 G
1654453 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1654552 original size:162 final size:162
Alignment explanation
Indices: 1654305--1654897 Score: 519
Period size: 162 Copynumber: 3.7 Consensus size: 162
1654295 TGGGACTGAC
* * * * * ** * * * * * *
1654305 AGCACGTAGAGGGGGATCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCAGCCTGCTCAGTG
1 AGCACGTAGAGGGGGACCAGGCCGATCCTTGGCTTGCGCATCCTGCCTCTCCGGCCGGTTGAGCG
* *
1654370 CCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCATATGGA
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGA
*
1654435 GTTCATTCCCAGTCTAAGATCGGACCGGCAGT
131 GTACATTCCCAGTCTAAGATCGGACCGGCAGT
* * * * * *
1654467 AGCATGTAGAGGGGGACCAGGCCAATCTTTGGCTTGCGCATCCTACCTCTTCGGCCGGTTGAGTG
1 AGCACGTAGAGGGGGACCAGGCCGATCCTTGGCTTGCGCATCCTGCCTCTCCGGCCGGTTGAGCG
* * * *
1654532 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGATCATTCCCAATCTAAGCCCCA-AC
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG---CATA-
* * *
1654596 TAGACCG-A-ATGACCCA---T-AG-T-GAGATC-G--GT
127 TGGA--GTACAT-TCCCAGTCTAAGATCG-GACCGGCAGT
* * * * * * * ** *
1654625 AGCACGTAGTGGGGGACC-GAGCCGATCCTCGACTTGCTCATTCTGGCTCTCCAGTTGGCTGAGC
1 AGCACGTAGAGGGGGACCAG-GCCGATCCTTGGCTTGCGCATCCTGCCTCTCCGGCCGGTTGAGC
1654689 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGG
65 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGG
* * * *
1654754 AGTACTTTCCCAGTCTAAGATCAGACCGACAGC
130 AGTACATTCCCAGTCTAAGATCGGACCGGCAGT
* ** * * *
1654787 AGCACGCAGAAAGGGACCAAGTCGATCCTTGGCTTGTGCATCCTGCCTCTCCGGCCGGTTGAGCG
1 AGCACGTAGAGGGGGACCAGGCCGATCCTTGGCTTGCGCATCCTGCCTCTCCGGCCGGTTGAGCG
* * * * **
1654852 CCCGTATGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATT
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT
1654898 ACTGGTCTAA
Statistics
Matches: 335, Mismatches: 74, Indels: 44
0.74 0.16 0.10
Matches are distributed among these distances:
153 1 0.00
154 5 0.01
155 6 0.02
156 1 0.00
157 2 0.01
158 104 0.31
159 4 0.01
160 2 0.01
161 4 0.01
162 192 0.57
163 1 0.00
164 1 0.00
165 7 0.02
166 4 0.01
167 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (162 bp):
AGCACGTAGAGGGGGACCAGGCCGATCCTTGGCTTGCGCATCCTGCCTCTCCGGCCGGTTGAGCG
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGA
GTACATTCCCAGTCTAAGATCGGACCGGCAGT
Found at i:1654750 original size:26 final size:26
Alignment explanation
Indices: 1654720--1654772 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1654710 GTTGACTTAG
*
1654720 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGTCTAA
** *
1654746 GCATATGGAGTACTTTCCCAGTCTAA
1 GCATACAGAGTACATTCCCAGTCTAA
1654772 G
1 G
1654773 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTACATTCCCAGTCTAA
Found at i:1654766 original size:320 final size:320
Alignment explanation
Indices: 1654373--1654995 Score: 827
Period size: 320 Copynumber: 1.9 Consensus size: 320
1654363 CTCAGTGCCT
* *
1654373 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTA
* * * * * ** * *
1654438 CATTCCCAGTCTAAGATCGGACCGGCAGTAGCATGTAGAGGGGGACCAGGCCAATCTTTGGCTTG
66 CATTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAGAAAGGGACCAAGCCAATCCTTGGCTTG
* * *
1654503 CGCATCCTACCTCTTCGGCCGGTTGAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATAC
131 CGCATCCTACCTCTCCGGCCGGTTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
* * ** *
1654568 GGAGATCATTCCCAATCTAAGCCCCAACTA-GACCGAATGACCCATAGTGAGATCGGTAGCACGT
196 GGAGATCATTACCAATCTAAGCCCCAAC-AGGACCGAAGGACCCATAGTGAGATCGACAGCACGC
* * *
1654632 AGTGGGGGACCGAGCCGATCCTCGACTTGCT-CATTCTGGCTCTCCAGTTGGCTGAGCGCCC
260 AGTAGGGGACCGAACCGATCCTCGACTT-ATGCATTCTGGCTCTCCAGTTGGCTGAGCGCCC
1654693 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTA
1 GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTA
* * *
1654758 CTTTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAGAAAGGGACCAAGTCGATCCTTGGCTTG
66 CATTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAGAAAGGGACCAAGCCAATCCTTGGCTTG
* * ** * * *
1654823 TGCATCCTGCCTCTCCGGCCGGTTGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATAT
131 CGCATCCTACCTCTCCGGCCGGTTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
* *** * * * *
1654888 GGAGTTCATTACTGGTCTAAGCCCCAACAGGATCGAGGGACCCGTAGTGAGATTGACAGCACGCA
196 GGAGATCATTACCAATCTAAGCCCCAACAGGACCGAAGGACCCATAGTGAGATCGACAGCACGCA
* * *
1654953 GTAGGGGATCGAACTGATCCTCGGCTTATGCATTCTGGCTCTC
261 GTAGGGGACCGAACCGATCCTCGACTTATGCATTCTGGCTCTC
1654996 TGGTCGGTTG
Statistics
Matches: 258, Mismatches: 43, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
319 2 0.01
320 256 0.99
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.25
Consensus pattern (320 bp):
GCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTA
CATTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAGAAAGGGACCAAGCCAATCCTTGGCTTG
CGCATCCTACCTCTCCGGCCGGTTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATAC
GGAGATCATTACCAATCTAAGCCCCAACAGGACCGAAGGACCCATAGTGAGATCGACAGCACGCA
GTAGGGGACCGAACCGATCCTCGACTTATGCATTCTGGCTCTCCAGTTGGCTGAGCGCCC
Found at i:1655261 original size:44 final size:45
Alignment explanation
Indices: 1655212--1655323 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 45
1655202 TCGGGGCTCG
* *
1655212 GCATGTGCCGATGGTGGTCGAGGCAACCGTCCGTACCA-CGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGTACGCACCAGCGCCCA
* * * * *
1655256 GCATGTGCCGATGGTGTTCGATGCAACCGTACGCACTAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGTACGCACCAGCGCCCA
* *
1655301 TCTTGTGCCGATGGTGGTCGAGG
1 GCATGTGCCGATGGTGGTCGAGG
1655324 TAATTGCCCG
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
44 33 0.59
45 23 0.41
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.21
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGTACGCACCAGCGCCCA
Found at i:1655361 original size:90 final size:89
Alignment explanation
Indices: 1655256--1655422 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 89
1655246 ACCACGCCCA
* * * * * * * *
1655256 GCATGTGCCGATGGTGTTCGATGCAACCGTACGC-ACTAGGGGCCATCTTGTGCCGATGGTGGTC
1 GCATGTACCGATGGTGATCGAGGCAACC--ACCCAACTAGGGCCCAACTTGCGCCGATGGCGGTC
* *
1655320 GAGGTAATTGCCCGCATCAAGGGTCG
64 GAGGCAAGTGCCCGCATCAAGGGTCG
1655346 GCATGTACCGATGGTGATCGAGGCAACCACCCATACTAGGGCCCAACTTGCGCCGATGGCGGTCG
1 GCATGTACCGATGGTGATCGAGGCAACCACCCA-ACTAGGGCCCAACTTGCGCCGATGGCGGTCG
1655411 AGGCAAGTGCCC
65 AGGCAAGTGCCC
1655423 ATACCAAAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
88 3 0.05
90 62 0.95
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (89 bp):
GCATGTACCGATGGTGATCGAGGCAACCACCCAACTAGGGCCCAACTTGCGCCGATGGCGGTCGA
GGCAAGTGCCCGCATCAAGGGTCG
Found at i:1656751 original size:26 final size:26
Alignment explanation
Indices: 1656721--1656773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1656711 GTTGACTTAG
1656721 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* **
1656747 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1656773 G
1 G
1656774 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1657284 original size:45 final size:44
Alignment explanation
Indices: 1657220--1657394 Score: 129
Period size: 45 Copynumber: 3.9 Consensus size: 44
1657210 TCGACATATG
*
1657220 CCGATGGT-TGTCGAGGCAACCACCCGCACCACGGCCCAGCATGTA
1 CCGATGGTGT-TCGAGGCAACCACCCACACCA-GGCCCAGCATGTA
* * * * * *
1657265 CCGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCTTGTC
1 CCGATGGTGTTCGAGGCAACCACCCACACCA-GGCCCAGCATGTA
* * ** * *
1657310 CCGATGGTGGTT-GAGGCAATCGCCCACACCAAGGGTCGGCATGTG
1 CCGATGGT-GTTCGAGGCAACCACCCACACC-AGGCCCAGCATGTA
* * **
1657355 TCGATGGTGATCGAGGCAACCACCTGCACCAGTGCCCAGC
1 CCGATGGTGTTCGAGGCAACCACCCACACCAG-GCCCAGC
1657395 TTGTGCTGAT
Statistics
Matches: 101, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
44 4 0.04
45 92 0.91
46 5 0.05
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.17
Consensus pattern (44 bp):
CCGATGGTGTTCGAGGCAACCACCCACACCAGGCCCAGCATGTA
Found at i:1657398 original size:90 final size:90
Alignment explanation
Indices: 1657256--1657450 Score: 196
Period size: 90 Copynumber: 2.2 Consensus size: 90
1657246 CACCACGGCC
** * * * * * **
1657256 CAGCATGTACCGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCTTGTCCCGATGGTGGT
1 CAGCATGTGTCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTCCCGATGGCAGT
*
1657321 TGAGGCAA-TCGCCCACACC-AAGGG
66 CGAGGCAAGT-GCCCACACCAAAGGG
* ** * * *
1657345 TCGGCATGTGTCGATGGTGATCGAGGCAACCACCTGCACCAGTGCCCAGCTTGTGCTGATGGCAG
1 -CAGCATGTGTCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTCCCGATGGCAG
*
1657410 TCGAGGCAAGTGCCCATACCAAAGGG
65 TCGAGGCAAGTGCCCACACCAAAGGG
*
1657436 CAGCCTGTGTCGATG
1 CAGCATGTGTCGATG
1657451 ATGGTCGATG
Statistics
Matches: 84, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
90 78 0.93
91 6 0.07
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (90 bp):
CAGCATGTGTCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTCCCGATGGCAGT
CGAGGCAAGTGCCCACACCAAAGGG
Found at i:1658003 original size:26 final size:26
Alignment explanation
Indices: 1657973--1658025 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1657963 GTTGACTTAG
1657973 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
1657999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1658025 G
1 G
1658026 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1658642 original size:376 final size:364
Alignment explanation
Indices: 1657909--1658649 Score: 803
Period size: 376 Copynumber: 2.0 Consensus size: 364
1657899 GTTGATCCCT
* * * * *
1657909 GGCTTGCGCATCCTGCCTCTCTGGCTGGTTGAGAGCCCCATGCTCGTTTCATGGGTTGACTTAGG
1 GGCTTACGCATCCTACCTCTCTGGCCGATTGAGAGCCCCACGCTCGTTTCATGGGTTGACTTAGG
* * * * * *
1657974 CATACGGAGTTCATCCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGACT
66 CAAACAGAGTCCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGGACT
* * * ** *
1658039 GAGGGTTGTAGTAGCAGGACCAGTAGCACATAGGGGGGACCAGGTCGATGCCCGGCTTGCGCATT
131 GAAGGTTGCAGTAGCAGGACCAGTAGCACATAGGGGGGACCAGGTCGATCCCCAACTTGCACATT
* * * **
1658104 CTGCCTCTCCCACCGACTGAGCCCTTGCATGCTCATTTCGTGGGTTGGCTTAGGCATGCGGAGTT
196 CTGCCTCTCCCACCGACTGAGCCCTCGCACGCTCATTTCGTGGGTTGGCTTAGACATAAGGAGTT
* * ** * * *
1658169 CATTCCTTGTCGAAGCCCCAGCCGGACCGGCGGTTTTGGTAGCGGGACTGATAGCACGCAGAGGG
261 CATTCCATGTCGAAGCCCCAGCCAGACAAGCGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGG
** ** *
1658234 GGATTGGTTCGATCCCCGAGTTGCATATTATGCCT-TCC
326 GGACCGGACCGATCCCCGAGTTGCACATTATGCCTCTCC
*
1658272 GGCTTACGCATCCTACCTCTCTGGCCGATTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAG
1 GGCTTACGCATCCTACCTCTCTGGCCGATTGAGAGCCC-CACGCTCGTTTCATGGGTTGACTTAG
*
1658337 GCAAACAGAGTCCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGA-
65 GCAAACAGAGTCCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGGAC
* * **
1658401 TCGAAGGTTGCGGTAGTAGGACCAGCAGTAGGATCGGTAGCATGCAGGGGGGA-TTGAGTCGATC
130 T-GAAGGTTGCAGTAGCAGGA-C--CAGTA-G--C---A-CAT--AGGGGGGACCAG-GTCGATC
**** * **
1658465 CCCAACTTGCACATTCTGCCTCTCCGGTTGACTGAGCACC-CGCACGGTTTTTTCGTGGGTTGGC
181 CCCAACTTGCACATTCTGCCTCTCCCACCGACTGAGC-CCTCGCACGCTCATTTCGTGGGTTGGC
*
1658529 TTAGACATAAGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACTAAG-GGTTGTGGCAGCGGGA-
245 TTAGACATAAGGAGTTCATTCCATGTCGAAGCCCCAGCCAGAC-AAGCGGTTGTGGCAGCGGGAC
* * *
1658592 TCGGCAGCACGCAGAGGGGGACCGGACCTATCCCC-AGCTTGCGCATTATGCCTCTCC
309 T-GACAGCACGCAGAGGGGGACCGGACCGATCCCCGAG-TTGCACATTATGCCTCTCC
1658649 G
1 G
1658650 ACCTGCTCAG
Statistics
Matches: 307, Mismatches: 51, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
363 34 0.11
364 97 0.32
365 1 0.00
367 5 0.02
368 1 0.00
370 1 0.00
373 1 0.00
374 3 0.01
375 4 0.01
376 153 0.50
377 7 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (364 bp):
GGCTTACGCATCCTACCTCTCTGGCCGATTGAGAGCCCCACGCTCGTTTCATGGGTTGACTTAGG
CAAACAGAGTCCATCCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGGACT
GAAGGTTGCAGTAGCAGGACCAGTAGCACATAGGGGGGACCAGGTCGATCCCCAACTTGCACATT
CTGCCTCTCCCACCGACTGAGCCCTCGCACGCTCATTTCGTGGGTTGGCTTAGACATAAGGAGTT
CATTCCATGTCGAAGCCCCAGCCAGACAAGCGGTTGTGGCAGCGGGACTGACAGCACGCAGAGGG
GGACCGGACCGATCCCCGAGTTGCACATTATGCCTCTCC
Found at i:1659312 original size:45 final size:44
Alignment explanation
Indices: 1659126--1659318 Score: 138
Period size: 45 Copynumber: 4.3 Consensus size: 44
1659116 CGGGGCTCGA
* * * * * *
1659126 CATGTGTCGATGGTTGTCGAGGCAACCACCCGCACCACGACCCAG
1 CATGTGCCGATGG-TGTCAAGGCAACCGCCCGCACCAGGGCCTAG
* * * * *
1659171 CATGTGCCGATGATGTTCAATGCAACTGCCCGTACCAGGGGCC-AT
1 CATGTGCCGATGGTG-TCAAGGCAACCGCCCGCACCA-GGGCCTAG
* * * * * *
1659216 CTTGTCCCGATGGTGGTCAAGGCAATCGCCCGCAACAAGGG-TTGG
1 CATGTGCCGATGGT-GTCAAGGCAACCGCCCGC-ACCAGGGCCTAG
* *
1659261 CATGTGCCGATGGTGATCGAGGCAACCGCCTGCACCAGGGCCTAG
1 CATGTGCCGATGGTG-TCAAGGCAACCGCCCGCACCAGGGCCTAG
*
1659306 CTTGTGCCGATGG
1 CATGTGCCGATGG
1659319 CGGCCGAGGC
Statistics
Matches: 111, Mismatches: 30, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
44 9 0.08
45 95 0.86
46 7 0.06
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (44 bp):
CATGTGCCGATGGTGTCAAGGCAACCGCCCGCACCAGGGCCTAG
Found at i:1660320 original size:26 final size:26
Alignment explanation
Indices: 1660272--1660324 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1660262 GTTGACTTAG
*
1660272 GCATACAGAGTTCATCCATAGTCTAA
1 GCATACAGAGTTCATCCACAGTCTAA
1660298 GCATACAGAGTTCATTCC-CAGTCTAA
1 GCATACAGAGTTCA-TCCACAGTCTAA
1660324 G
1 G
1660325 ATGGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCACAGTCTAA
Found at i:1660656 original size:26 final size:26
Alignment explanation
Indices: 1660627--1660679 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1660617 GTTGACTTAG
1660627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1660653 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1660679 G
1 G
1660680 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1662832 original size:26 final size:26
Alignment explanation
Indices: 1662793--1662848 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
1662783 TGGGTTGACT
* * *
1662793 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCCAATC
1662819 TAAGCATACAGAGTTCATTCCCAATC
1 TAAGCATACAGAGTTCATTCCCAATC
1662845 TAAG
1 TAAG
1662849 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAATC
Found at i:1663304 original size:45 final size:45
Alignment explanation
Indices: 1663254--1663353 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
1663244 GGCTTTGACA
* * * * *
1663254 GTGGTCGAGGTAACTGCTCGCCCCAGAGG-CCATCTTATGCCAATG
1 GTGGTCGAGGAAACCGCCCGCACCAG-GGCCCAGCTTATGCCAATG
* *
1663299 GTGGTCGAGGAAACCGCCCGCACCAGGGCCCAGCTTGTGCCGATG
1 GTGGTCGAGGAAACCGCCCGCACCAGGGCCCAGCTTATGCCAATG
1663344 GTGGTCGAGG
1 GTGGTCGAGG
1663354 CAAGTGCCCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 2 0.04
45 45 0.96
ACGTcount: A:0.18, C:0.29, G:0.35, T:0.18
Consensus pattern (45 bp):
GTGGTCGAGGAAACCGCCCGCACCAGGGCCCAGCTTATGCCAATG
Found at i:1664361 original size:12 final size:12
Alignment explanation
Indices: 1664344--1664379 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
1664334 CCGAGGGTGG
1664344 CGGTAGTAGGAC
1 CGGTAGTAGGAC
1664356 CGGTAGTAGGAC
1 CGGTAGTAGGAC
*
1664368 CAGTAGTAGGAC
1 CGGTAGTAGGAC
1664380 TAGCAGCAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.39, T:0.17
Consensus pattern (12 bp):
CGGTAGTAGGAC
Found at i:1664680 original size:26 final size:26
Alignment explanation
Indices: 1664650--1664702 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1664640 GTTGACTTAG
1664650 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCTA-TCTAA
1664676 GCATACGGAGTTCATTCCCTATCTAA
1 GCATACGGAGTTCATTCCCTATCTAA
1664702 G
1 G
1664703 ATCAAACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTATCTAA
Found at i:1665258 original size:45 final size:45
Alignment explanation
Indices: 1665151--1665258 Score: 110
Period size: 45 Copynumber: 2.4 Consensus size: 45
1665141 GACATGCGTC
* *
1665151 GATGGTGGTGGAGGCAACCGCCCGCACCACGGCCCAGCATGGGAT
1 GATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGGGAT
* * * * * * * *
1665196 GATGGTGTTCAATGCAACCGCCTACACCAGGGGCCATCTTGGG-T
1 GATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGGGAT
1665240 AGATGGTGGTCGAGGCAAC
1 -GATGGTGGTCGAGGCAAC
1665259 TGTTCGCCCC
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
44 1 0.02
45 48 0.98
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGGGAT
Found at i:1666524 original size:26 final size:26
Alignment explanation
Indices: 1666473--1666526 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
1666463 CCAACCAGAG
* *
1666473 AGCATACGGAGTTCAATCTCAGTCTA
1 AGCATACGGAGTTCAATCCCAATCTA
*
1666499 AGCATACGGAGTTCATTCCCAATCTA
1 AGCATACGGAGTTCAATCCCAATCTA
1666525 AG
1 AG
1666527 ATCGACCGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCAATCCCAATCTA
Found at i:1667015 original size:13 final size:13
Alignment explanation
Indices: 1666997--1667021 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1666987 ATGGTCGACG
1666997 CATGTGCCATCAC
1 CATGTGCCATCAC
1667010 CATGTGCCATCA
1 CATGTGCCATCA
1667022 TGTGCTGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1668232 original size:26 final size:26
Alignment explanation
Indices: 1668191--1668242 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1668181 GTTGACTTAG
* *
1668191 GCATACAGAGTCCATTGCCAGTCTAA
1 GCATACAAAGTCCATTCCCAGTCTAA
*
1668217 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTCCATTCCCAGTCTAA
1668243 ATCAGACTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTCCATTCCCAGTCTAA
Found at i:1668798 original size:45 final size:44
Alignment explanation
Indices: 1668692--1668854 Score: 155
Period size: 45 Copynumber: 3.6 Consensus size: 44
1668682 ATATGTGCTG
* * *
1668692 ATGGTGGTCGAGGCAACTGCCCGCACCATGGCCCAGCATGTGCCG
1 ATGGTGGTCGAGGCAACTGCCCGCACCA-GGGCCAGCTTGTGCCA
* * * * * *
1668737 ATGGAGTTCAATGCAACTGCCCACACCGAGGGCCATCTTGTGCCA
1 ATGGTGGTCGAGGCAACTGCCCGCACC-AGGGCCAGCTTGTGCCA
** *
1668782 ATGGTGGTCGAGGCAACCACTCGCACCAGGGCCCAGCTTGTGCCA
1 ATGGTGGTCGAGGCAACTGCCCGCACCAGGG-CCAGCTTGTGCCA
* * * *
1668827 GTGGCGGTCGAGGCAAGTGCCCGAACCA
1 ATGGTGGTCGAGGCAACTGCCCGCACCA
1668855 AAGGGTAGCC
Statistics
Matches: 91, Mismatches: 25, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
44 4 0.04
45 86 0.95
46 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.16
Consensus pattern (44 bp):
ATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCAGCTTGTGCCA
Found at i:1672039 original size:45 final size:45
Alignment explanation
Indices: 1671945--1672102 Score: 138
Period size: 45 Copynumber: 3.5 Consensus size: 45
1671935 GGGCTCGACA
* *** ** ** * *
1671945 TGTGCCGATGGTGGTCGAGGCAACTGTCTGCACCACTGCCTAGCA
1 TGTGCCGATGGTGTTCGAGGCAACAACCCACACCAGGGCCCAGCT
* * *
1671990 TGTGCCGATGGTGTTCGATGCAACAACCCACACCAGGGGCCATCT
1 TGTGCCGATGGTGTTCGAGGCAACAACCCACACCAGGGCCCAGCT
** * *
1672035 TGTGCCGATGGTGGTT-GAGGCAACCGCTCGCACCAGGGCCCAGCT
1 TGTGCCGATGGT-GTTCGAGGCAACAACCCACACCAGGGCCCAGCT
*
1672080 TGTGCCGATGGTGATCGAGGCAA
1 TGTGCCGATGGTGTTCGAGGCAA
1672103 GTGCCCGTAC
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
44 2 0.02
45 85 0.94
46 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (45 bp):
TGTGCCGATGGTGTTCGAGGCAACAACCCACACCAGGGCCCAGCT
Found at i:1672129 original size:90 final size:90
Alignment explanation
Indices: 1671945--1672142 Score: 211
Period size: 90 Copynumber: 2.2 Consensus size: 90
1671935 GGGCTCGACA
* * * * * *
1671945 TGTGCCGATGGTGGTCGAGGCAACTGTCTGCACCACTGCCTAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTTGAGGCAACCGTCTGCACCACGGCCCAGCATGTGCCGATGGTGATCGAGG
* * *
1672010 CAACAACCCACACCAGGGGCCATCT
66 CAACAACCCACACCAAGGGCCAGCC
* *
1672035 TGTGCCGATGGTGGTTGAGGCAACCG-CTCGCACCAGGGCCCAGCTTGTGCCGATGGTGATCGAG
1 TGTGCCGATGGTGGTTGAGGCAACCGTCT-GCACCACGGCCCAGCATGTGCCGATGGTGATCGAG
*** **
1672099 GCAAGTGCCCGTACCAAAGGG-CAGCC
65 GCAACAACCCACACC-AAGGGCCAGCC
*
1672125 TGTGCCGATGATGGTTGA
1 TGTGCCGATGGTGGTTGA
1672143 TGCATGTGCC
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
89 2 0.02
90 83 0.93
91 4 0.04
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (90 bp):
TGTGCCGATGGTGGTTGAGGCAACCGTCTGCACCACGGCCCAGCATGTGCCGATGGTGATCGAGG
CAACAACCCACACCAAGGGCCAGCC
Found at i:1673033 original size:26 final size:26
Alignment explanation
Indices: 1673004--1673056 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1672994 GGTGACTTAG
1673004 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
**
1673030 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
1673056 G
1 G
1673057 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:1673559 original size:26 final size:26
Alignment explanation
Indices: 1673529--1673580 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1673519 TTGACTTAGT
1673529 CATACAGAGTTCATCCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
* *
1673555 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAGTCTAAG
1673581 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAG
Found at i:1673809 original size:525 final size:522
Alignment explanation
Indices: 1672804--1673909 Score: 1335
Period size: 525 Copynumber: 2.1 Consensus size: 522
1672794 CCGACTAAGT
* * * ** *
1672804 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAGATCAGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* ** * * * * *
1672869 CAGATCAATGGTTGTGGCAGCAGGACCCGCAGCGGGTTTGGCAGCACGCAGAGGGGATCGGGTCG
66 CAGATCAAGGGTTGCAGCAACAGGACCCGCAGCGGGATCGACAACACGCAGAGGGGATCGGGTCG
* *
1672934 ATACCCGGCTTACGCATCCTACCTCTCTGGCCGGCTGAGTGCCCACACGCTCCTTTCATGGGTGA
131 ATACCCGGCTTACGCATCCTACCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCATGGGTGA
** * * *
1672999 CTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATCAGAT
196 CTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
1673064 CGGACTGAGGTTACGGTAGCAGGACCAGTAGCAGAATCGACAACACGCTGGAGGCACCGAGCCGA
261 CGGACTGAGGTTACAGTAGCAGGACCAGCAGCAGAATCGACAACACGCAGGAGGCACCGAGCCGA
* * * * * * *
1673129 TCCCTGGCTTGCACATTCTGCCTTTTCGGCCTGTTGAGCCCGTACACGCTCGTTTCGATGGTTGT
326 TCCCTGACTTGCACATTCTACCTTTTCGGCCGGTAGAGCCCG-ACACGCTCGATTCCATGGTTGG
* * * * * * *
1673194 TTTAGGCATATGGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCGAGGGTTGTGGTAGCGGGAT
390 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCGAGGGTTGAGGCAACAGGAC
* * * *
1673259 CGACAACACACAGAGGGGGATCGGGCCAATCCTCGGCTTGTGGATTATGCCTCTCCGG-TAGGCT
455 CGACAACACACAGAGGGAGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCT-GGCT
1673323 CAGC
519 CAGC
* * *
1673327 GCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTGAGATCGGAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
* * ** * *
1673392 CAGA-CTGAGGGTTGCAGTAACAGGACTTGTAGCGGGATCGACAACACGTAGAGGGGATCGGGTC
66 CAGATC-AAGGGTTGCAGCAACAGGACCCGCAGCGGGATCGACAACACGCAGAGGGGATCGGGTC
* * * * * **
1673456 -AGTCCCCGGCTTACGCATCTTGCCTCTCTGGTCGGTTGAGCGCCCGTACGCTCATTTCATGGGT
130 GA-TACCCGGCTTACGCATCCTACCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCATGGG-
*
1673520 TGACTTAGTCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
193 TGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
1673585 GACCGGA-TCGAAGGTTGCAGTAGCAGGACCAGCAGTAGGATCGACAGCACGCAGGGGGGACTCG
258 GACCGGACT-G-AGGTTACAGTAGCAGGACCAGCAGCAGAATCGACAACACGCAGGAGGCAC-CG
* **
1673649 A-CTGATCCCTGACTTGTGCATTCTACCTTTTCGGCCGGCTGAGAGCCCG-CACGCTC-ATTCCA
320 AGCCGATCCCTGACTTGCACATTCTACCTTTTCGGCCGG-T-AGAGCCCGACACGCTCGATTCCA
* * *
1673711 TGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAGTCGGACCGAGGGTTGAGGC
383 T-GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCGAGGGTTGAGGC
* * * *
1673776 AATAGGACCGATAGCACGCAGAGGGAGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCG
447 AACAGGACCGACAACACACAGAGGGAGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCG
1673841 GCTGGCTCAGC
512 GCTGGCTCAGC
** * * * *
1673852 ATCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAG
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
1673910 CATATGAAGT
Statistics
Matches: 490, Mismatches: 83, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
522 2 0.00
523 157 0.32
524 72 0.15
525 247 0.50
526 5 0.01
527 7 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (522 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGAC
CAGATCAAGGGTTGCAGCAACAGGACCCGCAGCGGGATCGACAACACGCAGAGGGGATCGGGTCG
ATACCCGGCTTACGCATCCTACCTCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCATGGGTGA
CTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACTGAGGTTACAGTAGCAGGACCAGCAGCAGAATCGACAACACGCAGGAGGCACCGAGCCGA
TCCCTGACTTGCACATTCTACCTTTTCGGCCGGTAGAGCCCGACACGCTCGATTCCATGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTAGAACCGAGGGTTGAGGCAACAGGACC
GACAACACACAGAGGGAGATCGGGCCAATCCCCGGCTTGCGCATTATGCCTCTCCGGCTGGCTCA
GC
Found at i:1675519 original size:26 final size:26
Alignment explanation
Indices: 1675489--1675541 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1675479 GTTGACTTAG
* *
1675489 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
*
1675515 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
1675541 G
1 G
1675542 ATCAACCCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:1675891 original size:26 final size:26
Alignment explanation
Indices: 1675844--1675896 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1675834 GTTGACTTTG
*
1675844 GCATATGGAGCTCATTCTCAGTCTAA
1 GCATATGGAGCTCATTCCCAGTCTAA
* **
1675870 GCATATGGAGTTTGTTCCCAGTCTAA
1 GCATATGGAGCTCATTCCCAGTCTAA
1675896 G
1 G
1675897 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGCTCATTCCCAGTCTAA
Found at i:1677273 original size:26 final size:26
Alignment explanation
Indices: 1677223--1677275 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1677213 GTTGACTTAG
*
1677223 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
*
1677249 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
1677275 G
1 G
1677276 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:1678134 original size:45 final size:45
Alignment explanation
Indices: 1678054--1678259 Score: 159
Period size: 45 Copynumber: 4.6 Consensus size: 45
1678044 TCAGGGTTCG
* *
1678054 GCATGTGCCGATGGTGGTCGAGGAAACCGCCCGCACCA-CGGCCTA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAGCGGCC-A
* * * * *
1678099 GCATGTGCTGATGGTGTTCGATGCAACTGCTCGCACCAGGGGCCA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAGCGGCCA
* * * * *
1678144 TCTTGTGCTGATGGTGGTCGAGGCAATCGCTCATGC-CAAG-GGCCA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGC-C-CGCACCAGCGGCCA
* * * ** * *
1678189 GCTTGTGCCGATGGTGATCGAGGCAACTACCCGGACTAG-GGCCCA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAGCGG-CCA
* *
1678234 GCTTGTGCTGATGGCGGTCGAGGCAA
1 GCATGTGCTGATGGTGGTCGAGGCAA
1678260 GTGCCCGTAC
Statistics
Matches: 128, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
43 1 0.01
44 6 0.05
45 112 0.88
46 7 0.05
47 2 0.02
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.20
Consensus pattern (45 bp):
GCATGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAGCGGCCA
Found at i:1678202 original size:90 final size:91
Alignment explanation
Indices: 1678093--1678259 Score: 228
Period size: 90 Copynumber: 1.8 Consensus size: 91
1678083 CCCGCACCAC
* * * * * * *
1678093 GGCCTAGCATGTGCTGATGGTGTTCGATGCAACTGCTCGCACCAGGGGCCATCTTGTGCTGATGG
1 GGCCTAGCATGTGCCGATGGTGATCGAGGCAACTACCCGCACCAGGGCCCAGCTTGTGCTGATGG
*
1678158 TGGTCGAGGCAATCGCTCATGCCAAG
66 CGGTCGAGGCAATCGCTCATGCCAAG
* * *
1678184 GGCC-AGCTTGTGCCGATGGTGATCGAGGCAACTACCCGGACTAGGGCCCAGCTTGTGCTGATGG
1 GGCCTAGCATGTGCCGATGGTGATCGAGGCAACTACCCGCACCAGGGCCCAGCTTGTGCTGATGG
1678248 CGGTCGAGGCAA
66 CGGTCGAGGCAA
1678260 GTGCCCGTAC
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
90 61 0.94
91 4 0.06
ACGTcount: A:0.18, C:0.26, G:0.35, T:0.22
Consensus pattern (91 bp):
GGCCTAGCATGTGCCGATGGTGATCGAGGCAACTACCCGCACCAGGGCCCAGCTTGTGCTGATGG
CGGTCGAGGCAATCGCTCATGCCAAG
Found at i:1678286 original size:90 final size:90
Alignment explanation
Indices: 1678057--1678290 Score: 222
Period size: 90 Copynumber: 2.6 Consensus size: 90
1678047 GGGTTCGGCA
* * * * ** * * * * *
1678057 TGTGCCGATGGTGGTCGAGGAAACCGCCCGCACC-ACGGCCTAGCATGTGCTGATGGTGTTCGAT
1 TGTGCTGATGGCGGTCGAGGCAATCGCCCATACCAAGGGCC-AGCCTGTGCCGATGGTGATCGAG
* * * *
1678121 GCAACTGCTCGCACCAGGGGCCATCT
65 GCAACTACCCGCACCAGGGCCCAGCT
* * * *
1678147 TGTGCTGATGGTGGTCGAGGCAATCGCTCATGCCAAGGGCCAGCTTGTGCCGATGGTGATCGAGG
1 TGTGCTGATGGCGGTCGAGGCAATCGCCCATACCAAGGGCCAGCCTGTGCCGATGGTGATCGAGG
* *
1678212 CAACTACCCGGACTAGGGCCCAGCT
66 CAACTACCCGCACCAGGGCCCAGCT
*
1678237 TGTGCTGATGGCGGTCGAGGCAAGT-GCCCGTACCAAAGGG-CAGCCTGTGCCGAT
1 TGTGCTGATGGCGGTCGAGGCAA-TCGCCCATACC-AAGGGCCAGCCTGTGCCGAT
1678291 TATGGTCAAT
Statistics
Matches: 118, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
90 107 0.91
91 11 0.09
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (90 bp):
TGTGCTGATGGCGGTCGAGGCAATCGCCCATACCAAGGGCCAGCCTGTGCCGATGGTGATCGAGG
CAACTACCCGCACCAGGGCCCAGCT
Found at i:1679242 original size:26 final size:26
Alignment explanation
Indices: 1679191--1679243 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1679181 GTTGACTTAG
*
1679191 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGCCTAA
1679217 GCATACGGAGTTCATTCCC-AGCCTAA
1 GCATACGGAGTTCA-TCCCTAGCCTAA
1679243 G
1 G
1679244 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGCCTAA
Found at i:1680104 original size:45 final size:44
Alignment explanation
Indices: 1680053--1680252 Score: 141
Period size: 45 Copynumber: 4.5 Consensus size: 44
1680043 CGAGGTTCAA
* *
1680053 CATGTGCCGATGGTGGTCGAGGCAACCACCCACACCACAGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AGCCCAG
* * * * *
1680098 CATGTGCCAATGGTGTTCGATGCAACCGCTCGCACCAGGAG-CCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA--AGCCCAG
* * * * *
1680143 CTTGTACCGATGGTGGTCAAGGCAACTGCCCGCACCAAGGCTCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA-GCCCAG
* * * * ** * **
1680188 CTTGTGTCGATGGCGGTTGAGGCAAGTGCCCGTACCAAAGGGCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGCCCAG
* *
1680233 CATGTGCCAATGATGGTCGA
1 CATGTGCCGATGGTGGTCGA
1680253 TGCATGTGCC
Statistics
Matches: 118, Mismatches: 33, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 112 0.95
46 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.18
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGCCCAG
Found at i:1686594 original size:90 final size:90
Alignment explanation
Indices: 1686480--1686663 Score: 307
Period size: 90 Copynumber: 2.0 Consensus size: 90
1686470 TGGTTCACCA
* *
1686480 AGTTGGATTTGAGGTCGGGCTACTATCAAGTCAGGATCACGGAGGGAGATGAGCCAAAGACAGCA
1 AGTTGGATTTGAGGTCAGACTACTATCAAGTCAGGATCACGGAGGGAGATGAGCCAAAGACAGCA
*
1686545 TGTGTCACTCA-ATATGGTTTGTATG
66 TGTGTCACT-AGATATGGTTCGTATG
*
1686570 AGTTGGATTTGAGGTCAGACTACTATCAAGTCAGGATCGCGGAGGGAGATGAGCCAAAGACAGCA
1 AGTTGGATTTGAGGTCAGACTACTATCAAGTCAGGATCACGGAGGGAGATGAGCCAAAGACAGCA
*
1686635 TGTGTCACTAGGTATGGTTCGTATG
66 TGTGTCACTAGATATGGTTCGTATG
1686660 AGTT
1 AGTT
1686664 CTTGGTGATG
Statistics
Matches: 88, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
89 1 0.01
90 87 0.99
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.26
Consensus pattern (90 bp):
AGTTGGATTTGAGGTCAGACTACTATCAAGTCAGGATCACGGAGGGAGATGAGCCAAAGACAGCA
TGTGTCACTAGATATGGTTCGTATG
Found at i:1688537 original size:45 final size:45
Alignment explanation
Indices: 1688378--1688547 Score: 153
Period size: 45 Copynumber: 3.8 Consensus size: 45
1688368 TAACCGCCCG
* * * * * *
1688378 CACCACGGCCCAGCATGTGCAGATGGTGTTCAATGCAATCACCCA
1 CACCAAGGCCCAGTATGTGCCGATGGTGGTCGAGGCAATCACCCA
* * * * *
1688423 CACCAGGGGCCA-TCTTGTGCCGATGGTGGTCGAGGCAATTACCCG
1 CACCAAGGCCCAGT-ATGTGCCGATGGTGGTCGAGGCAATCACCCA
** * * *
1688468 CACCAAGGGTCGGTATGTGCCGATGGTGATCGAGGCAATCGCCCA
1 CACCAAGGCCCAGTATGTGCCGATGGTGGTCGAGGCAATCACCCA
* * *
1688513 CACCAAGGCCCAGTTTGTGTCGATGGCGGTCGAGG
1 CACCAAGGCCCAGTATGTGCCGATGGTGGTCGAGG
1688548 TAAGTGCTCG
Statistics
Matches: 98, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
45 97 0.99
46 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
CACCAAGGCCCAGTATGTGCCGATGGTGGTCGAGGCAATCACCCA
Found at i:1689524 original size:26 final size:25
Alignment explanation
Indices: 1689494--1689545 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1689484 GTTGGATTAG
1689494 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCC-CAGTCTAA
*
1689520 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
1689545 G
1 G
1689546 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:1689723 original size:26 final size:26
Alignment explanation
Indices: 1689687--1689743 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
1689677 TGGGTTGGCT
*
1689687 TAAGCATACGGAGTTCATCCCCAGTA
1 TAAGAATACGGAGTTCATCCCCAGTA
* *
1689713 TAAGAATACGGAGTTCATTCCCAGTC
1 TAAGAATACGGAGTTCATCCCCAGTA
1689739 TAAGA
1 TAAGA
1689744 TCGAACTGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (26 bp):
TAAGAATACGGAGTTCATCCCCAGTA
Found at i:1689867 original size:197 final size:195
Alignment explanation
Indices: 1689377--1689893 Score: 653
Period size: 197 Copynumber: 2.6 Consensus size: 195
1689367 GGGTTGTGGC
* *
1689377 AGTAGGACCACCAGCAGGATCGATAGCACACAGGGGGGACTGGGTCGATCCTCGG-TTGCGCATT
1 AGTAGGACCAACAGCAGGATCGATAGCACGCAGGGGGGACTGGGTCGATCCTCGGCTTGCGCATT
* * * * *
1689441 CTACCTCTCCGGTCGGCTGAGCGCCTGCATGCTCGTTTCATGGGTTGGATTAGGCATACGGAGTT
66 CTGCCTCTCCAGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
* * * * *
1689506 CATCCTCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCGGATCGGATCGAGGGTTGGGAT
131 CATCCCCAGTATAAGAATACGGAGTTCATTCCAGTCTAAGATCGAATCGGATCGAGGGTTCGGAT
* * * * * * *
1689571 AGCAGGACCAACAGCAGGATCGACAACACGTAGGGGGGGACCGAGTCGATCCCCGGCTTGCGCAT
1 AGTAGGACCAACAGCAGGATCGATAGCACGCA-GGGGGGACTGGGTCGATCCTCGGCTTGCGCAT
* * * * * *
1689636 TCTGCCTCTCTAGCCGACTGAACGCCCTCATGCTCGTTTCGTGGGTTGGCTTAAGCATACGGAGT
65 TCTGCCTCTCCAGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGT
1689701 TCATCCCCAGTATAAGAATACGGAGTTCATTCCCAGTCTAAGATCGAA-CTGGATCGAGGGTTAC
130 TCATCCCCAGTATAAGAATACGGAGTTCATT-CCAGTCTAAGATCGAATC-GGATCGAGGGTT-C
1689765 GG-T
192 GGAT
* * * * *
1689768 AGTAAGACCAGCAGCAGGATCGGTAGCACGCAGGGGGAGACTGGGTTGATCCTCGGCTTGTGCAT
1 AGTAGGACCAACAGCAGGATCGATAGCACGCAGGGGG-GACTGGGTCGATCCTCGGCTTGCGCAT
* * * * *
1689833 TCTGGCTCTCCAGTCGATTGAGTGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACG
65 TCTGCCTCTCCAGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACG
1689894 TAGTGCCTTC
Statistics
Matches: 269, Mismatches: 48, Indels: 9
0.83 0.15 0.03
Matches are distributed among these distances:
194 26 0.10
195 20 0.07
196 96 0.36
197 125 0.46
198 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.23
Consensus pattern (195 bp):
AGTAGGACCAACAGCAGGATCGATAGCACGCAGGGGGGACTGGGTCGATCCTCGGCTTGCGCATT
CTGCCTCTCCAGTCGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTT
CATCCCCAGTATAAGAATACGGAGTTCATTCCAGTCTAAGATCGAATCGGATCGAGGGTTCGGAT
Found at i:1690128 original size:45 final size:45
Alignment explanation
Indices: 1690057--1690262 Score: 153
Period size: 45 Copynumber: 4.6 Consensus size: 45
1690047 CCAAGGCTCC
* * *
1690057 GCATGTGCCGATGGTGGTCTAGGCAACCGCCCGTACCATAGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
* * * *
1690102 GCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACTAGAGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
* * * ** * ** *
1690147 TCTTGTGCCGATGGTGGTCGAGGCAATCGTTCGCACTA-AGGGTCG
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGA-GCCCA
* * ** * *
1690192 GCATGTGCCGATGGTGATCAACACAACCGCCCACACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
* * ** *
1690237 ACTTGTGGTGATGGCGGTCGAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
1690263 GTCCCGTGCC
Statistics
Matches: 119, Mismatches: 40, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
44 1 0.01
45 118 0.99
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
Found at i:1691250 original size:26 final size:26
Alignment explanation
Indices: 1691202--1691254 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1691192 GTTGACTTAG
*
1691202 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATACCTAGTCTAA
*
1691228 GCATACGGATTTCATTACC-AGTCTAA
1 GCATACGGAGTTCA-TACCTAGTCTAA
1691254 G
1 G
1691255 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCTAGTCTAA
Found at i:1691840 original size:45 final size:45
Alignment explanation
Indices: 1691763--1691907 Score: 161
Period size: 45 Copynumber: 3.2 Consensus size: 45
1691753 ACCTACTCGC
* * *
1691763 ACCAGGGGCCATCTTGTGCCGATAGTGGTCGAGGCAATCGCCCGT
1 ACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGT
* * *
1691808 ACCAAGGGCC-GGTATGTGCTGATGGTGATCGAGGCAATCGCCCGT
1 ACCAAGGGCCAGCT-TGTGCCGATGGTGGTCGAGGCAATCGCCCGT
* *
1691853 ACC-TGGGCCTAGCTTGTGCCGATGGCGGTCGAGGCAAGT-GCCCGT
1 ACCAAGGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAA-TCGCCCGT
1691898 ACCAAAGGGC
1 ACC-AAGGGC
1691908 AGCCTACGTC
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
44 6 0.07
45 69 0.84
46 3 0.04
47 4 0.05
ACGTcount: A:0.19, C:0.28, G:0.35, T:0.19
Consensus pattern (45 bp):
ACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGT
Found at i:1692879 original size:26 final size:26
Alignment explanation
Indices: 1692831--1692883 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1692821 GTTGACTTAG
* *
1692831 GCATATGGAGTTCAGCCCCAGTCTAA
1 GCATACGGAGTTCAGCCCAAGTCTAA
**
1692857 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCAGCCCAAGTCTAA
1692883 G
1 G
1692884 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAGCCCAAGTCTAA
Found at i:1693221 original size:26 final size:26
Alignment explanation
Indices: 1693187--1693239 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1693177 GTTGACTTAG
* *
1693187 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1693213 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1693239 G
1 G
1693240 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1693397 original size:26 final size:26
Alignment explanation
Indices: 1693363--1693413 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1693353 TGACTTAGGA
*
1693363 ATACGGAGTTCA-TCCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCC-GTCTAAGC
1693389 ATACAGAGTTCATTCCCCGTCTAAG
1 ATACAGAGTTCATTCCCCGTCTAAG
1693414 ATCAGACCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCCGTCTAAGC
Found at i:1694170 original size:45 final size:45
Alignment explanation
Indices: 1694058--1694212 Score: 129
Period size: 45 Copynumber: 3.5 Consensus size: 45
1694048 GGGCTCGATA
* * ** * *
1694058 TGTGCCAATGGTGGTCGAGGCAACTGTCC-GCACCA-GGCCCAGCA
1 TGTGCCGATGGTGGTTGAGGCAAC-CACCTGCACCAGGGCCCAACT
* * * * *
1694102 TGTGCCGATAGT-GTTCGATGCAACCA-CTCGTACCAGGGGCCATCT
1 TGTGCCGATGGTGGTT-GAGGCAACCACCT-GCACCAGGGCCCAACT
*
1694147 TGTGCCGATGGTGGTTGAGGCAACCGCCTGCACCAGGGCCCAACT
1 TGTGCCGATGGTGGTTGAGGCAACCACCTGCACCAGGGCCCAACT
* *
1694192 TGTGCCGATGGCGGTCGAGGC
1 TGTGCCGATGGTGGTTGAGGC
1694213 CGTACTGAGG
Statistics
Matches: 87, Mismatches: 18, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 22 0.25
45 57 0.66
46 5 0.06
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTTGAGGCAACCACCTGCACCAGGGCCCAACT
Found at i:1694367 original size:26 final size:26
Alignment explanation
Indices: 1694338--1694390 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1694328 GTTGACTTAG
1694338 GCATACGGCA-TTCATCCCCAGTCTAA
1 GCATACGG-AGTTCATCCCCAGTCTAA
*
1694364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1694390 G
1 G
1694391 ATAAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1696284 original size:25 final size:26
Alignment explanation
Indices: 1696233--1696284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1696223 GTTGGCTTAG
*
1696233 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
1696259 GCATATAGAGTTCATT-CCAGTCTAA
1 GCATATAGAGTTCATTCCCAGTCTAA
1696284 G
1 G
1696285 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAGTCTAA
Found at i:1696992 original size:13 final size:13
Alignment explanation
Indices: 1696974--1696998 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1696964 ATGGTCGATG
1696974 CATGTGCCATCAC
1 CATGTGCCATCAC
1696987 CATGTGCCATCA
1 CATGTGCCATCA
1696999 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1697907 original size:26 final size:26
Alignment explanation
Indices: 1697871--1697923 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1697861 GTTGACTTAG
1697871 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1697897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1697923 G
1 G
1697924 ATCAAATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1697960 original size:170 final size:170
Alignment explanation
Indices: 1697784--1698096 Score: 455
Period size: 170 Copynumber: 1.8 Consensus size: 170
1697774 GATAGCACAT
* * * * *
1697784 AGAGGGGACCGGGTCGATCCCTGGCTTGTGCATCATGCCTCTCTAGATGGCTGAGTGCCCGCACG
1 AGAGGGGACCGAGTCGATCCCTGGCATGTGCATCATGCCTCTCTAGACGGCTGAGCGCCCGCACA
* **
1697849 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
66 CTCATTTCGTGGGTCGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1697914 CCAGTCTAAGATCAAATCGACAGCGAGATCGGCAGCACGC
131 CCAGTCTAAGATCAAATCGACAGCGAGATCGGCAGCACGC
** * * * * * * * *
1697954 AGAGGGGATTGAGTTGATCCTTGGCATGTGCATCCTGCGTCTCTGGCCGGCTGGGCGCCCGTACA
1 AGAGGGGACCGAGTCGATCCCTGGCATGTGCATCATGCCTCTCTAGACGGCTGAGCGCCCGCACA
*
1698019 CTCATTTTGTGGGTCGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
66 CTCATTTCGTGGGTCGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1698084 CCAGTCTAAGATC
131 CCAGTCTAAGATC
1698097 GGACCAGACC
Statistics
Matches: 124, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
170 124 1.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (170 bp):
AGAGGGGACCGAGTCGATCCCTGGCATGTGCATCATGCCTCTCTAGACGGCTGAGCGCCCGCACA
CTCATTTCGTGGGTCGACTTAGGCATACAAAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAAATCGACAGCGAGATCGGCAGCACGC
Found at i:1698070 original size:26 final size:26
Alignment explanation
Indices: 1698041--1698093 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1698031 GTCGACTTAG
1698041 GCATACAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
1698067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
1698093 G
1 G
1698094 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:1699044 original size:24 final size:25
Alignment explanation
Indices: 1699017--1699065 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 25
1699007 GAGGGTTGCA
*
1699017 ACAGCATGACTAGCAGCA-GGATCG
1 ACAGCATGACCAGCAGCAGGGATCG
1699041 ACAGCATGACCAGCAGCAGGGATCG
1 ACAGCATGACCAGCAGCAGGGATCG
1699066 GGCCGATCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.33, C:0.27, G:0.31, T:0.10
Consensus pattern (25 bp):
ACAGCATGACCAGCAGCAGGGATCG
Found at i:1699172 original size:26 final size:26
Alignment explanation
Indices: 1699142--1699194 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1699132 GTTGACTTAG
* *
1699142 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1699168 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1699194 G
1 G
1699195 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1699922 original size:196 final size:196
Alignment explanation
Indices: 1699586--1699952 Score: 461
Period size: 196 Copynumber: 1.9 Consensus size: 196
1699576 ACGTAGTGCC
* *
1699586 CTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGACCCGCAGCGAGATCGATAGC
1 CTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGACCAGCAGAGAGATCGATAGC
** ** ** *
1699651 ACGCAGAGGGGACTGGGTCGATCCTCAGCTTGCGCATCCTACCTCTATGGCCGGCTGAGTGCCTG
66 ACGCAGAGGGGACCAGGTCGATCCTCAGCTTGCGCATCCTACCTCTACAGCCGGCTGAGCACCCG
* * *
1699716 CACGCTCGTTTTGTGGGTTGACTTAGGCATATGAAGTTCATCCCTAGCCTAAGCATACGGAGTTC
131 CACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGCCTAAGCATACGGAGTTC
1699781 A
196 A
* * *
1699782 CTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGAG-AGCAGGACCATCAGTAG-GATCGATA
1 CTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATG-GCAGCAAGACCAGCAG-AGAGATCGATA
* * * * * * * *
1699845 GCACGTAGGGGGGACCAGGTCGATCC-CTAGCTTGTGTATTCTGCCTCTCCAGTCGGCTGAGCAC
64 GCACGCAGAGGGGACCAGGTCGATCCTC-AGCTTGCGCATCCTACCTCTACAGCCGGCTGAGCAC
* *
1699909 CCGCACACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
128 CCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
1699953 TCCATGTCTA
Statistics
Matches: 143, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
195 1 0.01
196 140 0.98
197 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (196 bp):
CTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAAGACCAGCAGAGAGATCGATAGC
ACGCAGAGGGGACCAGGTCGATCCTCAGCTTGCGCATCCTACCTCTACAGCCGGCTGAGCACCCG
CACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCTAGCCTAAGCATACGGAGTTC
A
Found at i:1700781 original size:45 final size:45
Alignment explanation
Indices: 1700587--1700791 Score: 169
Period size: 45 Copynumber: 4.6 Consensus size: 45
1700577 GATCGGGGCT
* * *
1700587 CAGCATGTGCCGATGGTGGTCAAGGCAACCGCCCATACCATGGCC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCC
* * * * *
1700632 CAGCATGTGCCGATGGTGTTCGATGCAACCACCCGCACTAGAGG-C
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA-AGGCC
* * * * * *** *
1700677 CATCTTGTGCCGTTGGTGGTAGAGGCAATCGCTTGCACCAAGGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCC
* * * * * *
1700722 CGGCATGTGTCGATGATGATCGAGGCAACCGCCTACTCCAAGGCC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCC
* *
1700767 CAGCTTGTGCCGATGGCGGTCGAGG
1 CAGCATGTGCCGATGGTGGTCGAGG
1700792 TAAGTGCCCG
Statistics
Matches: 120, Mismatches: 38, Indels: 4
0.74 0.23 0.02
Matches are distributed among these distances:
44 3 0.03
45 115 0.96
46 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCC
Found at i:1701751 original size:26 final size:26
Alignment explanation
Indices: 1701721--1701773 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1701711 GTTGACTTAG
*
1701721 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGCTCATTC-CCAGTCTAA
**
1701747 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
1701773 G
1 G
1701774 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:1702543 original size:45 final size:45
Alignment explanation
Indices: 1702401--1702600 Score: 134
Period size: 45 Copynumber: 4.5 Consensus size: 45
1702391 GCTCGACATA
* * * * *
1702401 TGCCGATGGTGGTTGACGCAACCGCCCGCACC-ATGCCCAGCATT
1 TGCCGATGGTGGTTGAGGCAACCACCCGCACCAAGGACCAGCATG
* * * * * *
1702445 TGCTGATGGT-GTTCGATGCAACCACCCGTACGAAGGACCATCCTG
1 TGCCGATGGTGGTT-GAGGCAACCACCCGCACCAAGGACCAGCATG
** * * *
1702490 TGATGATGGTGGTTGAGGCAATCACCCGCACCAAGGGCCGGCATG
1 TGCCGATGGTGGTTGAGGCAACCACCCGCACCAAGGACCAGCATG
* * * ** * * *
1702535 TGCCGATGGTGATCGAGGCAACCGCCTACACCAGGGCCCAGCTTG
1 TGCCGATGGTGGTTGAGGCAACCACCCGCACCAAGGACCAGCATG
* * *
1702580 TGCTGATGGCGGTCGAGGCAA
1 TGCCGATGGTGGTTGAGGCAA
1702601 GTGCTCGTAC
Statistics
Matches: 119, Mismatches: 34, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
43 3 0.03
44 23 0.19
45 90 0.76
46 3 0.03
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.18
Consensus pattern (45 bp):
TGCCGATGGTGGTTGAGGCAACCACCCGCACCAAGGACCAGCATG
Found at i:1706696 original size:26 final size:26
Alignment explanation
Indices: 1706660--1706712 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1706650 GTTGACTTAG
1706660 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1706686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1706712 G
1 G
1706713 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1707073 original size:45 final size:45
Alignment explanation
Indices: 1707005--1707205 Score: 206
Period size: 45 Copynumber: 4.5 Consensus size: 45
1706995 CTGGGGCTCG
* * *
1707005 GCATGTGTCGATGGTGGTTGAGGCAACTGCCCGCACCATAGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAAGCCCA
* *
1707050 GCATGTGCCGATGGTGGTCGAGGCAA-TCGCCCGCACCAAAGGCCG
1 GCATGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACCAAAGCCCA
* * * * *
1707095 GCATGTGTCGATGGTGATCGAGGCAACCGCCCCCACCAAGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAAGCCCA
* * * * * **
1707140 GCTTGTGCCAATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGGCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAAGCCCA
* * *
1707185 GCTTGTGCTGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
1707206 TGCATATGCC
Statistics
Matches: 126, Mismatches: 28, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
44 1 0.01
45 125 0.99
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.17
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAAGCCCA
Found at i:1707159 original size:90 final size:90
Alignment explanation
Indices: 1707003--1707181 Score: 254
Period size: 90 Copynumber: 2.0 Consensus size: 90
1706993 GACTGGGGCT
* * * * * *
1707003 CGGCATGTGTCGATGGTGGTTGAGGCAACTGCCCGCACCATAGCCCAGCATGTGCCGATGGTGGT
1 CGGCATGTGTCGATGGTGATCGAGGCAACCGCCCCCACCATAGCCCAGCATGTGCCAATGGCGGT
1707068 CGAGGCAA-TCGCCCGCACCAAAGGC
66 CGAGGCAAGT-GCCCGCACCAAAGGC
*
1707093 CGGCATGTGTCGATGGTGATCGAGGCAACCGCCCCCACCA-AGGCCCAGCTTGTGCCAATGGCGG
1 CGGCATGTGTCGATGGTGATCGAGGCAACCGCCCCCACCATA-GCCCAGCATGTGCCAATGGCGG
*
1707157 TCGAGGCAAGTGCCCGTACCAAAGG
65 TCGAGGCAAGTGCCCGCACCAAAGG
1707182 GCAGCTTGTG
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
89 1 0.01
90 77 0.97
91 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.33, T:0.16
Consensus pattern (90 bp):
CGGCATGTGTCGATGGTGATCGAGGCAACCGCCCCCACCATAGCCCAGCATGTGCCAATGGCGGT
CGAGGCAAGTGCCCGCACCAAAGGC
Found at i:1707226 original size:13 final size:13
Alignment explanation
Indices: 1707208--1707232 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1707198 ATGGTCGATG
1707208 CATATGCCATCAC
1 CATATGCCATCAC
1707221 CATATGCCATCA
1 CATATGCCATCA
1707233 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.24
Consensus pattern (13 bp):
CATATGCCATCAC
Found at i:1708155 original size:26 final size:26
Alignment explanation
Indices: 1708108--1708160 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1708098 GTTGACTTAG
* *
1708108 GCATACGGAGTTCATCGCCAGTCTAA
1 GCATACAGAGTTCATCGACAGTCTAA
1708134 GCATACAGAGTTCATTC-ACAGTCTAA
1 GCATACAGAGTTCA-TCGACAGTCTAA
1708160 G
1 G
1708161 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCGACAGTCTAA
Found at i:1709068 original size:90 final size:90
Alignment explanation
Indices: 1708931--1709101 Score: 209
Period size: 90 Copynumber: 1.9 Consensus size: 90
1708921 GCTCGACATT
* ** * * * * *
1708931 TGTCGATGGTGGTTGAGGCAATCGCCCGTACCACGGCCCAGCATGTGCCGATGGTGTTCGATGTA
1 TGTCGATGGTGGTCGAGGCAATCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGCA
*
1708996 ACCACCTGCACCAGGGGCAATCTTA
66 ACCACCCGCACCAGGGGCAATCTTA
** *
1709021 TGTCGATGGTGGTCGAGGCAATCGGTCACACCAAAGGCCCA-CTTGTGCCAATGGTGATCGAGGC
1 TGTCGATGGTGGTCGAGGCAATCGCCCACACC-AAGGCCCAGCATGTGCCAATGGTGATCGAGGC
*
1709085 AACCACCCGTACCAGGG
65 AACCACCCGCACCAGGG
1709102 CCCAGCTTAG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 60 0.90
91 7 0.10
ACGTcount: A:0.22, C:0.28, G:0.30, T:0.20
Consensus pattern (90 bp):
TGTCGATGGTGGTCGAGGCAATCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGGCA
ACCACCCGCACCAGGGGCAATCTTA
Found at i:1709604 original size:26 final size:26
Alignment explanation
Indices: 1709568--1709618 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1709558 TGACTTAGGT
1709568 ATACAGAGTTCA-TCCCTAGTCTAAGC
1 ATACAGAGTTCATTCCC-AGTCTAAGC
*
1709594 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
1709619 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:1711321 original size:26 final size:26
Alignment explanation
Indices: 1711271--1711323 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1711261 GATGACTTAG
*
1711271 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* * *
1711297 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
1711323 G
1 G
1711324 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:1711643 original size:26 final size:26
Alignment explanation
Indices: 1711613--1711665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1711603 GTTGACTTAG
1711613 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1711639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1711665 G
1 G
1711666 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1713294 original size:26 final size:26
Alignment explanation
Indices: 1713244--1713296 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1713234 GTTGACTTAG
*
1713244 GCATACGAAGTTAATCCTCAGTCTAA
1 GCATACGAAGTTAATCCTCAATCTAA
*
1713270 GCATACGAAGTTCATTCC-CAATCTAA
1 GCATACGAAGTT-AATCCTCAATCTAA
1713296 G
1 G
1713297 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATCCTCAATCTAA
Found at i:1714286 original size:26 final size:26
Alignment explanation
Indices: 1714257--1714309 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1714247 GTTTACTTAG
1714257 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
1714283 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1714309 G
1 G
1714310 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1714696 original size:355 final size:342
Alignment explanation
Indices: 1714239--1715009 Score: 825
Period size: 343 Copynumber: 2.2 Consensus size: 342
1714229 CGTACGTTTG
* * * *
1714239 TTTCGTGGGTTTACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTTCCAG
1 TTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
1714304 TCTAAGATCAGACCAGACCGATGGTTACAGTAGCAGGACCAGCAGTAGGATCGACAGCACGCAGG
65 TCTAAGATCAGACCAGACCAAGGGTTACAGCAGCAGGACC-G-A-TA-G--C-AC-GCA-G--GG
* **
1714369 CGGGATC-GGATCGATCCCTAGATTACGCATTCTACCTCATC-GACT-GGCTGAGTGCCCGCATG
119 -GGGATCGGGCT-GATCCCTAGATTACGCATTCTACCTC-TCTG-CTCGGCTGAGTGCCCGCACA
* * * * *
1714431 CTCGTTTCGTGGGTTAGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGGACCGAG
180 CTCGTTTCATAGGTTAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAG
* * * * * * * *
1714496 GGTTGTGGTAGCAGGACTGGCAGCACATAGAGGGGGGCCGGGCCGATCCCTGGCTT-CTGCATTA
245 GGTTATGGCAGCAGGACCGACAGCACACAGAGGAGGACCGGGCCGATCCCCGGCTTGCT-CATTA
*
1714560 TGCCTCTCCCACTGA-CTCAACGCCCGCACGCTCA
309 TGCCTCT-CCACTCAGCTCAACGCCCGCACGCTCA
* * *
1714594 TTTCATGGGTTGACTTAGGTAAACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * *
1714659 TCTAAGATC-GAACCGGACCAAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGGATCGGGC
65 TCTAAGATCAG-ACCAGACCAAGGGTTACAGCAGCAGGACCGATAGCACGCAGGGGGGATCGGGC
* * * * * * * * **
1714723 TGATCCTTGGCTTGCGCATTCTGCTTCTCTGGTCGGCTGAGTGCCCGTACACTTTTTTCATAGGT
129 TGATCCCTAGATTACGCATTCTACCTCTCTGCTCGGCTGAGTGCCCGCACACTCGTTTCATAGGT
* *
1714788 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGCGG
194 TAGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGCAG
* * **
1714853 GACCGACAGCACACAGAGGAGGATCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTTCGGTCAG
259 GACCGACAGCACACAGAGGAGGACCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCCACTCAG
* * * *
1714918 CTTAATGCCCGTACGCTCG
324 CTCAACGCCCGCACGCTCA
* *
1714937 TTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
1715002 TATAAGAT
65 TCTAAGAT
1715010 TTAATCGACA
Statistics
Matches: 351, Mismatches: 58, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
342 7 0.02
343 236 0.67
344 7 0.02
346 1 0.00
347 3 0.01
348 2 0.01
349 1 0.00
351 1 0.00
352 2 0.01
353 1 0.00
354 2 0.01
355 88 0.25
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (342 bp):
TTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGACCAAGGGTTACAGCAGCAGGACCGATAGCACGCAGGGGGGATCGGGCTG
ATCCCTAGATTACGCATTCTACCTCTCTGCTCGGCTGAGTGCCCGCACACTCGTTTCATAGGTTA
GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGCAGGA
CCGACAGCACACAGAGGAGGACCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTCCACTCAGCT
CAACGCCCGCACGCTCA
Found at i:1714959 original size:159 final size:157
Alignment explanation
Indices: 1714638--1714982 Score: 365
Period size: 159 Copynumber: 2.2 Consensus size: 157
1714628 CCCAGTCTAA
** * * * *
1714638 GCATACGGAGTTCATTCCCA-GTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGGATCGAT
1 GCATAC-GAGTTCATT-CCATGTCTAAGCCCCAACCGGACCAAGGGTTACGGCAGCAGGACCGAC
* * * ** * * * *
1714702 AGCACGCAGGGGGGATCGGGCTGATCCTTGGCTTGCGCATTCTGCTTCTCTGGTCGGCTGAGTGC
64 AGCACACAGGGAGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCAGCTGAATGC
* *
1714767 CCGTACACTTTTTTCATAGGTTGGCTTAG
129 CCGTACACTGTTTTCATAGGTTGACTTAG
* * *
1714796 GCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGCGGGACCGACA
1 GCATAC-GAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTACGGCAGCAGGACCGACA
* *
1714861 GCACACAGAGGAGGATCGGGCCGATCCCCGGCTTGCTCATTATGCCTCT-TCGGTCAGCTTAATG
65 GCACACAG-GGAGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCT-GGTCAGCTGAATG
* * *
1714925 CCCGTACGCTCGTTTT-GTGGGTTGACTTAG
128 CCCGTACACT-GTTTTCATAGGTTGACTTAG
1714955 GCATACGAAGTTCATTCC-TAGTCTAAGC
1 GCATACG-AGTTCATTCCAT-GTCTAAGC
1714983 ATACGGAGTT
Statistics
Matches: 155, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 61 0.39
159 87 0.56
160 4 0.03
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
GCATACGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTACGGCAGCAGGACCGACAG
CACACAGGGAGGATCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGGTCAGCTGAATGCCC
GTACACTGTTTTCATAGGTTGACTTAG
Found at i:1714984 original size:26 final size:26
Alignment explanation
Indices: 1714955--1715007 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1714945 GTTGACTTAG
* *
1714955 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
1714981 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
1715007 G
1 G
1715008 ATTTAATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:1715319 original size:506 final size:505
Alignment explanation
Indices: 1714586--1715568 Score: 1394
Period size: 506 Copynumber: 1.9 Consensus size: 505
1714576 TCAACGCCCG
* *
1714586 CACGCTCATTTCATGGGTTGACTTAGGTAAACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
1 CACGCTCATTTCATGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* ** * * *
1714651 ATTCCCAGTCTAAGATCGAACCGGACCAAGGGTTGCGGCAGCAGGATCGATAGCACGCAGGGGGG
66 ATTCCCAATCTAAGATCGAACCAAACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
* * * * * * * * * **
1714716 ATCGGGCTGATCCTTGGCTTGCGCATTCTGCTTCTCTGGTCGGCTGAGTGCCCGTACACTTTTTT
131 ATCAGACCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCATACACTCATTT
*
1714781 CATAGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATG
196 CATAGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATG
* *
1714846 GCAGCGGGACCGACAGCACACAGAGGAGGATCGGGCCGATCCCCGGCTTGCTCATTATGCCTCTT
261 GCAGCGAGACCGACAGCACACAGAGGAGGATCGGGCCAATCCCCGGCTTGCTCATTATGCCTCTT
* **
1714911 CGGTCAGCTTAATG-CCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTA
326 CGATC-GCTTAA-GACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTA
* *
1714975 GTCTAAGC-ATACGGAGTTCATTCCCAGTATAAGATTTAATCGACAGCAGGATCGGCAGCAGCAC
389 GTCTAA-CAATACAGAGTTCATTCCCAGTATAAGATTGAATCGACAGCAGGATCGGCAGCAGCAC
**
1715039 GTAGAGGGGGATCAGGCCGATCCCCGGCATTGGGGGTTCTGGCTGAGCACCCA
453 ACAGAGGGGGATCAGGCCGATCCCCGGCATTGGGGGTTCTGGCTGAGCACCCA
* * ** * *
1715092 CACGCTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATCCCCAGTCTAAGCATATGGAGTTC
1 CACGCTCATTTCATGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
* * * * * *
1715157 ATTCCCAATCTAAGATTGGATCAAACCAGGGGTTATGACAGCAGGATCGACAGCACGTAGGGGGG
66 ATTCCCAATCTAAGATCGAACCAAACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
* *
1715222 ATCAGACCGATCCTCGGCTTGTGCATTCTGCCTCTCTGGCCGACTGAGCGCCCATACGCTCATTT
131 ATCAGACCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCATACACTCATTT
* * **
1715287 CATGGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCTGGACTGAGGGTTATG
196 CATAGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATG
* *
1715352 GCAGCGAGACCGACAGCACGCAGAGGAGGATCGGGCCAATCCTCGGCTTGCTCATTATGCCTCTT
261 GCAGCGAGACCGACAGCACACAGAGGAGGATCGGGCCAATCCCCGGCTTGCTCATTATGCCTCTT
* * * *
1715417 CGATCGGTTCAGCACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAG
326 CGATCGCTTAAG-ACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAG
* * * *
1715482 TCTAACAATACAGAGTTCATTCCCAGTCTAAGATTGAATCGGCAGCGGGATCGGTAGCAGCACAC
390 TCTAACAATACAGAGTTCATTCCCAGTATAAGATTGAATCGACAGCAGGATCGGCAGCAGCACAC
*
1715547 AGAGGGGGATCGGGCCGATCCC
455 AGAGGGGGATCAGGCCGATCCC
1715569 TGACTTGCGC
Statistics
Matches: 416, Mismatches: 58, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
504 1 0.00
505 5 0.01
506 410 0.99
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (505 bp):
CACGCTCATTTCATGGGTTGACTTAGGCAAACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTC
ATTCCCAATCTAAGATCGAACCAAACCAAGGGTTACGACAGCAGGATCGACAGCACGCAGGGGGG
ATCAGACCGATCCTCGGCTTGCGCATTCTGCCTCTCTGGCCGACTGAGCGCCCATACACTCATTT
CATAGGTGGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATG
GCAGCGAGACCGACAGCACACAGAGGAGGATCGGGCCAATCCCCGGCTTGCTCATTATGCCTCTT
CGATCGCTTAAGACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGT
CTAACAATACAGAGTTCATTCCCAGTATAAGATTGAATCGACAGCAGGATCGGCAGCAGCACACA
GAGGGGGATCAGGCCGATCCCCGGCATTGGGGGTTCTGGCTGAGCACCCA
Found at i:1715492 original size:26 final size:26
Alignment explanation
Indices: 1715463--1715512 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1715453 TGACTTAGGC
* * *
1715463 ATACGGAGTTTATTCCTAGTCTAACA
1 ATACAGAGTTCATTCCCAGTCTAACA
1715489 ATACAGAGTTCATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
1715513 GATTGAATCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAACA
Found at i:1717222 original size:157 final size:159
Alignment explanation
Indices: 1716894--1717252 Score: 433
Period size: 157 Copynumber: 2.3 Consensus size: 159
1716884 AGCACCCGTG
* *
1716894 CGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATT-CCATGTCTAAGCCCCAGCCAGACT
1 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCCAACCAGACT
*** ** * * * *
1716958 GAGGGTTGTGGTAGCGGGACCGACAGCACAAAGAGGGGGACCGGGCCGAGCTTCGGCTTGCGTAA
66 GAGGGGCCTGACAGCGGGACCAACA-CACAAAGAGGGGAACCGGGCCGAGCCTCGGCTTGCGCAA
* *
1717023 CCTACCTCTCCGGTCGGCTGAGTGCCCGCA
130 CCTACCTCTCCAGTCGGCTGAGCGCCCGCA
1717053 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGCCCCAACCAGA-T
1 CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCCAACCAGACT
* * * * *
1717116 CGAGGGGCCT-ACAGTGGGATCAACA-ATAGCAGAGGGGAACCGGGCCGATCCTCGGCTTGCGCA
66 -GAGGGGCCTGACAGCGGGACCAACACACA-AAGAGGGGAACCGGGCCGAGCCTCGGCTTGCGCA
** **
1717179 TTCTGGCTCTCCAGTCGGCTGAGCGCCCGCA
129 ACCTACCTCTCCAGTCGGCTGAGCGCCCGCA
*
1717210 CGCTCGTTTCATGGGTTGACTTAGGCATAC-GTAGTGCATTCCC
1 CGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCC
1717253 GATCTTGACA
Statistics
Matches: 173, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
156 3 0.02
157 94 0.54
158 11 0.06
159 62 0.36
160 3 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (159 bp):
CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCATGTCTAAGCCCCAACCAGACT
GAGGGGCCTGACAGCGGGACCAACACACAAAGAGGGGAACCGGGCCGAGCCTCGGCTTGCGCAAC
CTACCTCTCCAGTCGGCTGAGCGCCCGCA
Found at i:1717531 original size:45 final size:44
Alignment explanation
Indices: 1717408--1717550 Score: 144
Period size: 45 Copynumber: 3.2 Consensus size: 44
1717398 GGGCTCGACA
* * * *
1717408 TGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCATGGCCTAGCA
1 TGTGCCGATGGTGGTCGAAGCAACCGTTCGCACCAGGGCC-AGCT
* * * * *
1717453 TGTGCCGATGGTGTTCGATGAAATCGCTT-GCACCAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAAGCAACCG-TTCGCACC-AGGGCCAGCT
* *
1717498 TGTGTCGATGGTGGTCGAAGCAACCGTTCGCACCGAGGCCCAGCT
1 TGTGCCGATGGTGGTCGAAGCAACCGTTCGCACC-AGGGCCAGCT
1717543 TGTGCCGA
1 TGTGCCGA
1717551 GGATCACGAT
Statistics
Matches: 78, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
44 2 0.03
45 70 0.90
46 6 0.08
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAAGCAACCGTTCGCACCAGGGCCAGCT
Found at i:1725937 original size:26 final size:26
Alignment explanation
Indices: 1725901--1725953 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1725891 GTTGACTTAG
1725901 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1725927 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1725953 G
1 G
1725954 ATCAGGTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1726330 original size:45 final size:45
Alignment explanation
Indices: 1726190--1726442 Score: 170
Period size: 45 Copynumber: 5.6 Consensus size: 45
1726180 GGGTCGACCG
* * * * *
1726190 GGGCTCAGCATGTACCAATGGTGGTCGAGGCAACCGTCTGCACCAC
1 GGGC-CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * * **
1726236 GGCCCAGCATGTGCCGATGGTGTTC-ATTGCAACCGCTCGCACCTG
1 GGGCCAGCATGTGCCGATGGTGGTCGA-GGCAACCGCCCGCACCAA
* * * *
1726281 GGGCCATCTTGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAA
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* * * * *
1726326 GGGCCGGCATGTACCGATGGTGATCGAGGTAACCGCCCACACC-A
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
* ** * * ** * *
1726370 GGGCCCAGCTTGTGCTAATGGCGATCGAGGCAAGTGCCAGTACCAAA
1 GGG-CCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AA
* *
1726417 GGG-CAGCCTGTGCCGATGATGGTCGA
1 GGGCCAGCATGTGCCGATGGTGGTCGA
1726443 TGCATGTGCC
Statistics
Matches: 155, Mismatches: 47, Indels: 11
0.73 0.22 0.05
Matches are distributed among these distances:
44 5 0.03
45 142 0.92
46 4 0.03
47 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.18
Consensus pattern (45 bp):
GGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAA
Found at i:1726382 original size:90 final size:90
Alignment explanation
Indices: 1726207--1726383 Score: 203
Period size: 90 Copynumber: 2.0 Consensus size: 90
1726197 GCATGTACCA
* * * * * *
1726207 ATGGTGGTCGAGGCAACCGTCTGCACCACGGCCCAGCATGTGCCGATGGTGTTCATTGCAACCGC
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTACCGATGGTGATCATGGCAACCGC
* * * * *
1726272 TCGCACCTGGGGCCATCTTGTGTCG
66 CCACACCAGGGCCCAGCTTGTGTCG
* * * *
1726297 ATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGGCATGTACCGATGGTGATCGA-GGTAACCG
1 ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTACCGATGGTGATC-ATGGCAACCG
1726361 CCCACACCAGGGCCCAGCTTGTG
65 CCCACACCAGGGCCCAGCTTGTG
1726384 CTAATGGCGA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 70 0.99
91 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTACCGATGGTGATCATGGCAACCGC
CCACACCAGGGCCCAGCTTGTGTCG
Found at i:1727277 original size:26 final size:26
Alignment explanation
Indices: 1727246--1727298 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1727236 GTTGACTTAG
1727246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1727272 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1727298 G
1 G
1727299 ATCGAACCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1727852 original size:44 final size:44
Alignment explanation
Indices: 1727740--1727893 Score: 146
Period size: 45 Copynumber: 3.5 Consensus size: 44
1727730 GGGCTCGACA
** * *
1727740 TGTGCCGATGGTGGTCGAGGCAACCGCCCTTACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA-GGGCCAGCT
* * * * * * * *
1727785 TGTGCTGATAGTGTTCGATGCAACCGTCCGCACCAGGGTCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCAGCT
* *
1727829 TGTGCCAATGGTGGTCGAGGCAACTGCCCACACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGG-CCAGCT
* *
1727874 TATGCCGATGGCGGTCGAGG
1 TGTGCCGATGGTGGTCGAGG
1727894 AAAGTGCCCG
Statistics
Matches: 84, Mismatches: 24, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
44 35 0.42
45 49 0.58
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCAGCT
Found at i:1729823 original size:45 final size:45
Alignment explanation
Indices: 1729703--1729823 Score: 100
Period size: 45 Copynumber: 2.7 Consensus size: 45
1729693 ATAGTGGTTG
* * * * *
1729703 AGGCAACCG-CTCGCACCATGGCCCAGCATGTGCCGATGGTGATCG
1 AGGCAACCGCCT-GCACCAAGGCCCAACTTGTACCGATGGTGATCA
* * *** * * * *
1729748 ATGCAACCACCCATACCAGGGGCCATCTTGTACCGATGGTGTTCA
1 AGGCAACCGCCTGCACCAAGGCCCAACTTGTACCGATGGTGATCA
1729793 AGGCAACCGCCTGCACCAAGGCCCAACTTGT
1 AGGCAACCGCCTGCACCAAGGCCCAACTTGT
1729824 GCCAACGGCG
Statistics
Matches: 55, Mismatches: 20, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
45 54 0.98
46 1 0.02
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (45 bp):
AGGCAACCGCCTGCACCAAGGCCCAACTTGTACCGATGGTGATCA
Found at i:1736357 original size:26 final size:26
Alignment explanation
Indices: 1736327--1736379 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1736317 GTTTACTTAG
1736327 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1736353 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1736379 G
1 G
1736380 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1736719 original size:26 final size:26
Alignment explanation
Indices: 1736683--1736735 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1736673 GTTGACTTAG
**
1736683 GCATACAGAGTTCATTCCTTGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1736709 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1736735 G
1 G
1736736 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1737245 original size:45 final size:44
Alignment explanation
Indices: 1737194--1737322 Score: 125
Period size: 45 Copynumber: 2.9 Consensus size: 44
1737184 ATTATGGTCT
*
1737194 AGGCAACCGCTTGCACCATGGCCCAACATGTGTCGATGGT-GTTCG
1 AGGCAACCGCCTGCACCA-GGCCCAACATGTGTCGATGGTGGTT-G
* * * * *
1737239 ATGCAACTGCCTGCACCAGAGGCCATCTTGTGTCGATGGTGGTTG
1 AGGCAACCGCCTGCACCAG-GCCCAACATGTGTCGATGGTGGTTG
* * * *
1737284 AGGCAATCGCCTGCACCAGGGCCCAGCCTATGTCGATGG
1 AGGCAACCGCCTGCACCA-GGCCCAACATGTGTCGATGG
1737323 CAGTCGAGGC
Statistics
Matches: 68, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
44 1 0.01
45 63 0.93
46 4 0.06
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (44 bp):
AGGCAACCGCCTGCACCAGGCCCAACATGTGTCGATGGTGGTTG
Found at i:1738304 original size:26 final size:26
Alignment explanation
Indices: 1738274--1738326 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1738264 GTTGACTTAG
*
1738274 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
1738300 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1738326 G
1 G
1738327 ATTAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1740225 original size:196 final size:195
Alignment explanation
Indices: 1739878--1740238 Score: 472
Period size: 196 Copynumber: 1.8 Consensus size: 195
1739868 GTGCATTCAC
* * * * * ** *
1739878 AGTCTAAGATTGGATCAGACTGAAGGTTGTAGTAGTAGGACCCACAGCAGGATCGACAGCGCGTA
1 AGTCTAAGATCGGACCAGACTCAAGGTTGCAGTAGTAGGACCAACAGCAGGATCGACAGCAAGCA
* * * * * * *
1739943 GAGGGGACCGGTCGATCCCCAGCTTGCGCACTTTGCCTTTCTGGCCAGCTGAGCACTCGCACGCT
66 GAGGGGACCGGCCAATCCCCAGCTTGCGCACTTTGCCTCTCCGACCAGCTGAGCACCCGCACACT
1740008 CATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTTTAATCATACCGAGTTCATTCCT
131 CATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTTTAATCATACCGAGTTCATTCCT
*
1740073 AGTCTAAGATCGGACCAGAC-CAAGGGTTGCAGTAGTAGGACCAACAGTAGGATCGACAGCAAGC
1 AGTCTAAGATCGGACCAGACTCAA-GGTTGCAGTAGTAGGACCAACAGCAGGATCGACAGCAAGC
* ** * * *
1740137 AGGGGGGACCGAGCCAATCCCTGGCTTGCGCATTTTGCCTCTCCGATCGGCTGAGCACCCGCACA
65 AGAGGGGACCG-GCCAATCCCCAGCTTGCGCACTTTGCCTCTCCGACCAGCTGAGCACCCGCACA
* **
1740202 CTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
129 CTCATTTCATGGGTTAACTTAGGCATACGGAGTTCAT
1740239 TCCATGTCTA
Statistics
Matches: 139, Mismatches: 25, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
194 2 0.01
195 62 0.45
196 75 0.54
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.23
Consensus pattern (195 bp):
AGTCTAAGATCGGACCAGACTCAAGGTTGCAGTAGTAGGACCAACAGCAGGATCGACAGCAAGCA
GAGGGGACCGGCCAATCCCCAGCTTGCGCACTTTGCCTCTCCGACCAGCTGAGCACCCGCACACT
CATTTCATGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTTTAATCATACCGAGTTCATTCCT
Found at i:1740807 original size:45 final size:45
Alignment explanation
Indices: 1740731--1740890 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 45
1740721 CGGGGCTTAA
* *
1740731 CATGTGCCGATGGTGGTCGAGGC-AGTCGCCCGCACCATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACCAGGGCCCAG
* * * * *
1740776 CATGTGCCGATGGTGTTCGATGCAACTGCCCGTACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCAG
* * * *
1740821 CTTGTCCCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCAG
* * * *
1740866 CTTGTGCTGATGGCGGTTGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1740891 GTGCTCGTAC
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 91 0.98
46 2 0.02
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCAG
Found at i:1740900 original size:90 final size:90
Alignment explanation
Indices: 1740737--1740902 Score: 226
Period size: 90 Copynumber: 1.8 Consensus size: 90
1740727 TTAACATGTG
* ** * * *
1740737 CCGATGGTGGTCGAGGCAGTCGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATGCAAC
1 CCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGGGGTTCGAGGCAAC
1740802 TGCCCGTACCAGGGGCCATCTTGTC
66 TGCCCGTACCAGGGGCCATCTTGTC
* *
1740827 CCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCTGATGGCGGTT-GAGGCAA
1 CCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGG-GGTTCGAGGCAA
* *
1740891 GTGCTCGTACCA
65 CTGCCCGTACCA
1740903 AAGAGCAGCT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
90 62 0.95
91 3 0.05
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (90 bp):
CCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGGGGTTCGAGGCAAC
TGCCCGTACCAGGGGCCATCTTGTC
Found at i:1740915 original size:90 final size:89
Alignment explanation
Indices: 1740737--1740930 Score: 212
Period size: 90 Copynumber: 2.1 Consensus size: 89
1740727 TTAACATGTG
** * * *
1740737 CCGATGGTGGTCGAGGCAGTCGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATGCAAC
1 CCGAT-GTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGGGGTTCGAGGCAAC
* * *
1740802 TGCCCGTACCAGGGGCCATCTTGTC
65 TGCCCGTACCAAGAGCCAGCTTGTC
* *
1740827 CCGATAGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCTGATGGCGGTT-GAGGCAA
1 CCGAT-GTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGG-GGTTCGAGGCAA
* * *
1740891 GTGCTCGTACCAAAGAG-CAGCTTGTG
64 CTGCCCGTACC-AAGAGCCAGCTTGTC
1740917 CCGATGATGGTCGA
1 CCGATG-TGGTCGA
1740931 TGCATGTGCC
Statistics
Matches: 87, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
89 1 0.01
90 80 0.92
91 6 0.07
ACGTcount: A:0.18, C:0.29, G:0.34, T:0.19
Consensus pattern (89 bp):
CCGATGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGGGGTTCGAGGCAACT
GCCCGTACCAAGAGCCAGCTTGTC
Found at i:1741890 original size:159 final size:159
Alignment explanation
Indices: 1741704--1741999 Score: 389
Period size: 159 Copynumber: 1.9 Consensus size: 159
1741694 GAACCAGACT
* * * * * * *
1741704 GAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGTGGGGGATCGGATCGAT-CCCTGACTTGCGCA
1 GAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGAGGGATCGGAGCGATCCCCAG-CTTGCGCA
* * * * * * * *
1741768 TTCTGCCTC-TCTGACCGGTTGAGCCCCCGCACGCTCGTTTCATGGGTTGGCTTCGGCAGATGGA
65 TTATGCCTCTTC-GACCGGTTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCAGACGGA
1741832 GTTCATTCCATGTCTGAGCCTCAGCTGGACC
129 GTTCATTCCATGTCTGAGCCTCAGCTGGACC
* *
1741863 GAGGGTTGTGGCAGCGGGATCGACAGCACACAGAGAGGGATCGGGGCGATCCCCAGCTTGCGCAT
1 GAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGAGGGATCGGAGCGATCCCCAGCTTGCGCAT
* *
1741928 TATGCCTCTTCGATCGGTTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATACGGAGT
66 TATGCCTCTTCGACCGGTTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCAGACGGAGT
1741993 TCATTCC
131 TCATTCC
1742000 CAGTCTAAGC
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
159 110 0.95
160 6 0.05
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (159 bp):
GAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGAGGGATCGGAGCGATCCCCAGCTTGCGCAT
TATGCCTCTTCGACCGGTTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCAGACGGAGT
TCATTCCATGTCTGAGCCTCAGCTGGACC
Found at i:1742562 original size:45 final size:45
Alignment explanation
Indices: 1742418--1742570 Score: 148
Period size: 45 Copynumber: 3.4 Consensus size: 45
1742408 GTTCGGGGCT
* *
1742418 CGGCATATGCCGATGGTGGTCGAGGCAATCACCCACACC-ACGGCC
1 CGGCATGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAACGG-C
* * * * * *
1742463 CAGCATGTGCCGATGGTGTTCGATGCAATCGCCCGCATCAAGGGC
1 CGGCATGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAACGGC
** * * *
1742508 C-ATATTGTGCCAATGGTGGTCAAGGCAATCGCCCACACCAATGGC
1 CGGCA-TGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAACGGC
*
1742553 CGGCATGTGCTGATGGTG
1 CGGCATGTGCCGATGGTG
1742571 ATCATTGTAT
Statistics
Matches: 84, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
44 1 0.01
45 79 0.94
46 4 0.05
ACGTcount: A:0.22, C:0.29, G:0.30, T:0.19
Consensus pattern (45 bp):
CGGCATGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAACGGC
Done.