Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 16 of 120
Found at i:1743273 original size:26 final size:26
Alignment explanation
Indices: 1743243--1743294 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1743233 TGACTTAGGC
*
1743243 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
1743269 ATACGGAGTTCATTCCCAATCTAAGA
1 ATACGGAGTTCATTCCCAATCTAAGA
1743295 TCAGACTGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGA
Found at i:1743806 original size:45 final size:45
Alignment explanation
Indices: 1743742--1743949 Score: 168
Period size: 45 Copynumber: 4.6 Consensus size: 45
1743732 CGGCATTTGT
*
1743742 CGATGGTGGTCGAGGCAACCGCCCGTACCACGGCCCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCAGCATGTGC
* * * * * *
1743787 CGATGGTGTTCGATGCAACCACCC-TCACCAGGGGCCATCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGT-ACCAGGGCCCAGCATGTGC
* * * * ** *
1743832 CGATGGCGGCCGAGGTAATCGCCCACACCAAGGG-CCGGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGTACC-AGGGCCCAGCATGTGC
** * * *
1743877 TAATGGTGATCGAGGCAACCGCCCGTACCAGGGCCCAACTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCAGCATGTGC
** * **
1743922 TAATGGCGGTCGAGGCAATTGCCCGTAC
1 CGATGGTGGTCGAGGCAACCGCCCGTAC
1743950 TAAAGGGCAG
Statistics
Matches: 125, Mismatches: 34, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
44 5 0.04
45 116 0.93
46 4 0.03
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCAGCATGTGC
Found at i:1743874 original size:90 final size:90
Alignment explanation
Indices: 1743752--1743945 Score: 210
Period size: 90 Copynumber: 2.2 Consensus size: 90
1743742 CGATGGTGGT
* ** * * * * * *
1743752 CGAGGCAACCGCCCGTACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAACCACCC-TCACC
1 CGAGGCAATCGCCCACACCAAGGGCCGGCATGTGCCAATGGTGATCGAGGCAACCACCCGT-ACC
* * *
1743816 AGGGGCCATCTTGTGCCGATGGCGGC
65 AGGGCCCAACTTGTGCCAATGGCGGC
* * *
1743842 CGAGGTAATCGCCCACACCAAGGGCCGGCATGTGCTAATGGTGATCGAGGCAACCGCCCGTACCA
1 CGAGGCAATCGCCCACACCAAGGGCCGGCATGTGCCAATGGTGATCGAGGCAACCACCCGTACCA
* *
1743907 GGGCCCAACTTGTGCTAATGGCGGT
66 GGGCCCAACTTGTGCCAATGGCGGC
*
1743932 CGAGGCAATTGCCC
1 CGAGGCAATCGCCC
1743946 GTACTAAAGG
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
90 83 0.99
91 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.30, T:0.16
Consensus pattern (90 bp):
CGAGGCAATCGCCCACACCAAGGGCCGGCATGTGCCAATGGTGATCGAGGCAACCACCCGTACCA
GGGCCCAACTTGTGCCAATGGCGGC
Found at i:1744912 original size:26 final size:26
Alignment explanation
Indices: 1744882--1744934 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1744872 GTTGACTTAG
*
1744882 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
* *
1744908 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
1744934 G
1 G
1744935 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:1745878 original size:26 final size:26
Alignment explanation
Indices: 1745841--1745893 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1745831 GTTGACTTAG
*
1745841 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
1745867 GCATACGAAGTTCATTCCCGGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1745893 G
1 G
1745894 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1746225 original size:25 final size:26
Alignment explanation
Indices: 1746196--1746247 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
1746186 GATGACTTAG
1746196 GCATACGAAGTTCATTCC-AGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
*
1746221 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
1746247 G
1 G
1746248 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:1746908 original size:13 final size:13
Alignment explanation
Indices: 1746890--1746914 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1746880 ATGGTCGATG
1746890 CATGTGCCATCAC
1 CATGTGCCATCAC
1746903 CATGTGCCATCA
1 CATGTGCCATCA
1746915 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1747304 original size:136 final size:136
Alignment explanation
Indices: 1747049--1747293 Score: 337
Period size: 136 Copynumber: 1.8 Consensus size: 136
1747039 GGATCGACAA
* * *
1747049 CACGCAGAAAGGGATCGGGTCGATCCTTGACTTGCGCATTATGCCTCTCCGACCGGCTCAGCGCC
1 CACGCAGAAAGGGATCGAGTCGATCCTTGACTTGCGCATCATGCCTCTCCGACCGACTCAGCGCC
* * *
1747114 CGTACACTCGTTTCATGGGTTGATTTAGGCATACGGAGTTCATTGCCAGTCTAAGATCCGATCGA
66 CGTACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAAGATCCGATCGA
1747179 CAGCAG
131 CAGCAG
** * * * *
1747185 CACGCAGAGGGGGATCGAGTCGATCCTTGGCTTGCGCATCCTGCCTCTCCGGCCGACTGAGCGCC
1 CACGCAGAAAGGGATCGAGTCGATCCTTGACTTGCGCATCATGCCTCTCCGACCGACTCAGCGCC
* ** * *
1747250 TGTATGCTTATTTCGTGGGTTGACTTAGGCATACGAAGTTCATT
66 CGTACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATT
1747294 CCTGGTCTAA
Statistics
Matches: 92, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
136 92 1.00
ACGTcount: A:0.19, C:0.27, G:0.28, T:0.26
Consensus pattern (136 bp):
CACGCAGAAAGGGATCGAGTCGATCCTTGACTTGCGCATCATGCCTCTCCGACCGACTCAGCGCC
CGTACACTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAAGATCCGATCGA
CAGCAG
Found at i:1747889 original size:26 final size:26
Alignment explanation
Indices: 1747853--1747905 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1747843 GTTGACTTAG
1747853 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
1747879 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1747905 G
1 G
1747906 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1748451 original size:353 final size:354
Alignment explanation
Indices: 1747738--1748616 Score: 920
Period size: 354 Copynumber: 2.5 Consensus size: 354
1747728 AGCATATGTC
*** * * * * * **
1747738 GGTTGTGGCAGCATGACCGACAGCACGTAGAGGGGGACCGGGCCGA-CCCTG-GCTTGTGCATTA
1 GGTTGTGGCAGTGGGACTGACAACACGCAGAGGGGGACCGAGCCAATCCC-GAGCTTGCACATTA
* * * ** * *
1747801 TGCCTCGCCGGTCGGCTCAACGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
65 TGCCTCTCCGGCCTGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
1747866 ATCCCCAGTCTAAGCATACGGAGTTCATTC-CTAGTCTAAGATCGGATCAGATCGAGGGTTGTGG
130 AT-CCCAGTCTAAGCATACGGAGTTCATTCTC-AGTCTAAGATCAGATCAGATCGAAGGATGCGA
* ** ** * * * * * * *
1747930 TAGCAGGACCAGTAGTAGGATCGGCAGCATGCAGAGGGGATCGGGCTGATCCCTGGATTGTGCGT
193 CAGCAGGACCAACAACAAGATCGACAGCATGCAGAGGGGACCAGGCCGATCCCTAGATTGTGCAT
* * * * *
1747995 TCTACCTTTCTGGTCAGCTGAGTCCCTGCATGCTCATTTCGTGGGTTGCTTTAGGCATACAGAGT
258 TCTACCTCTCCGGCCAGCTGAGCCCCTGCATGCTCATTCCGTGGGTTGCTTTAGGCATACAGAGT
*
1748060 TCATTCCATGTCTAAGCCCCAGTCAGACCGAG
323 TCATTCCATGTCTAAGCCCCAGTCAGACCGAA
* * * * *
1748092 GGTTGTGGTAGTGGGA-TCGACAGCACGCAGA-GGGGATCGGGTCAATCCCCGA-CTTGCACATC
1 GGTTGTGGCAGTGGGACT-GACAACACGCAGAGGGGGACCGAGCCAAT-CCCGAGCTTGCACAT-
* * * * * *
1748154 T-TGCCTCTCTGGCC-GACTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAG
63 TATGCCTCTCCGGCCTG-CTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * *
1748217 TTCATCCTAGT-TAAGCATACAGAGTTCATTCTCAGTCTAAGATCAGATCGGA-CTGAAGGATGC
127 TTCATCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGATC-GAAGGATGC
* *
1748280 GACAGCAGGACCAACAACAAGATCGATAGCATGCAGAGGGGGACCAGGCCGAT-CCTCAGCTTGT
191 GACAGCAGGACCAACAACAAGATCGACAGCATGCAGA-GGGGACCAGGCCGATCCCT-AGATTGT
* * * *
1748344 GCATTCTGCCTCTCCGGCCGGTTGAGCCCCTGCACT-CTCGTTCCGTGGGTTGGC-TTAGGCATA
254 GCATTCTACCTCTCCGGCCAGCTGAGCCCCTGCA-TGCTCATTCCGTGGGTT-GCTTTAGGCATA
* ** *
1748407 CGGAGTTCATTCCATGTCTAAGCCCTTGTCGGACCGAA
317 CAGAGTTCATTCCATGTCTAAGCCCCAGTCAGACCGAA
* * *
1748445 GGTTGTGGCAGTGGGACTGACAACACGCAGAGGGGGACCGAGCCGATCCCTAGCTTGCGCATTAT
1 GGTTGTGGCAGTGGGACTGACAACACGCAGAGGGGGACCGAGCCAATCCCGAGCTTGCACATTAT
* * *
1748510 GCCTCTCCGGCCTGTTCAACGCCCACACACTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
66 GCCTCTCCGGCCTGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
1748575 TTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC
131 -TCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATC
1748617 GGACCGACAG
Statistics
Matches: 430, Mismatches: 76, Indels: 36
0.79 0.14 0.07
Matches are distributed among these distances:
351 1 0.00
352 73 0.17
353 148 0.34
354 165 0.38
355 11 0.03
356 32 0.07
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (354 bp):
GGTTGTGGCAGTGGGACTGACAACACGCAGAGGGGGACCGAGCCAATCCCGAGCTTGCACATTAT
GCCTCTCCGGCCTGCTCAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCAGATCGAAGGATGCGACAG
CAGGACCAACAACAAGATCGACAGCATGCAGAGGGGACCAGGCCGATCCCTAGATTGTGCATTCT
ACCTCTCCGGCCAGCTGAGCCCCTGCATGCTCATTCCGTGGGTTGCTTTAGGCATACAGAGTTCA
TTCCATGTCTAAGCCCCAGTCAGACCGAA
Found at i:1748590 original size:26 final size:26
Alignment explanation
Indices: 1748561--1748613 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1748551 GTTGACTTAG
1748561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1748587 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1748613 G
1 G
1748614 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1749192 original size:45 final size:44
Alignment explanation
Indices: 1749081--1749212 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 44
1749071 GAGGCAATTG
* * * * * *
1749081 CCTGCACCACGGCCCAGCATGTGCTGATGGTGTTTGATGCAACCG
1 CCTGCACCAGGGCCCAGCTTGTGC-GATGGTGGTCGAGGCAACCA
* * * *
1749126 CCTACACTAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAACCA
1 CCTGCACCAGGGCCCAGCTTGTG-CGATGGTGGTCGAGGCAACCA
* *
1749171 CCTGCACCAGGGCCCAGCTTGTGCCGATTGCGGTCGAGGCAA
1 CCTGCACCAGGGCCCAGCTTGTG-CGATGGTGGTCGAGGCAA
1749213 GTGCCCGTAC
Statistics
Matches: 69, Mismatches: 17, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
45 68 0.99
46 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.20
Consensus pattern (44 bp):
CCTGCACCAGGGCCCAGCTTGTGCGATGGTGGTCGAGGCAACCA
Found at i:1750967 original size:45 final size:45
Alignment explanation
Indices: 1750918--1751063 Score: 159
Period size: 45 Copynumber: 3.2 Consensus size: 45
1750908 TAGTCCAGCA
* * * * *
1750918 TGTGTCGATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGATCGAGGCAACTACCCGCACCAAGGGCCAACT
* * * *
1750963 TGTGTCGATGGTGGTCGAGGCAA-TCACCCGCACCAAGGGCCAGCA
1 TGTGCCGATGGTGATCGAGGCAACT-ACCCGCACCAAGGGCCAACT
** * *
1751008 TGTGCCGATGGTGATCGAGGCAACCGCCCACACCAAGGCCCAACT
1 TGTGCCGATGGTGATCGAGGCAACTACCCGCACCAAGGGCCAACT
1751053 TGTGCCGATGG
1 TGTGCCGATGG
1751064 CATTCGAGGC
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
44 1 0.01
45 85 0.99
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGATCGAGGCAACTACCCGCACCAAGGGCCAACT
Found at i:1751071 original size:45 final size:45
Alignment explanation
Indices: 1750889--1751075 Score: 126
Period size: 45 Copynumber: 4.2 Consensus size: 45
1750879 GATGGTGGTA
* * * * * **
1750889 GAGGTAACCACCCACACCGTA-GTCCAGCATGTGTCGATGGTGTTC
1 GAGGCAACCACCCACACC-AAGGCCCAACATGTGCCGATGGTCATC
* * * * * * * * **
1750934 GATGCAACTACCCGCACCAGGGGCCATCTTGTGTCGATGGTGGTC
1 GAGGCAACCACCCACACCAAGGCCCAACATGTGCCGATGGTCATC
* * * * *
1750979 GAGGCAATCACCCGCACCAAGGGCCAGCATGTGCCGATGGTGATC
1 GAGGCAACCACCCACACCAAGGCCCAACATGTGCCGATGGTCATC
* *
1751024 GAGGCAACCGCCCACACCAAGGCCCAACTTGTGCCGATGG-CATTC
1 GAGGCAACCACCCACACCAAGGCCCAACATGTGCCGATGGTCA-TC
1751069 GAGGCAA
1 GAGGCAA
1751076 GTGCCCGTGT
Statistics
Matches: 115, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.01
45 114 0.99
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (45 bp):
GAGGCAACCACCCACACCAAGGCCCAACATGTGCCGATGGTCATC
Found at i:1751071 original size:90 final size:90
Alignment explanation
Indices: 1750912--1751075 Score: 211
Period size: 90 Copynumber: 1.8 Consensus size: 90
1750902 ACACCGTAGT
* * * * * * * * * **
1750912 CCAGCATGTGTCGATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCTTGTGTCGATGGTGG
1 CCAGCATGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGCCCAACTTGTGCCGATGGCAG
1750977 TCGAGGCAATCACCCGCACCAAGGG
66 TCGAGGCAATCACCCGCACCAAGGG
* *
1751002 CCAGCATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAAGGCCCAACTTGTGCCGATGGCAT
1 CCAGCATGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGCCCAACTTGTGCCGATGGCAG
1751067 TCGAGGCAA
66 TCGAGGCAA
1751076 GTGCCCGTGT
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 61 1.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (90 bp):
CCAGCATGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGCCCAACTTGTGCCGATGGCAG
TCGAGGCAATCACCCGCACCAAGGG
Found at i:1757956 original size:26 final size:26
Alignment explanation
Indices: 1757927--1757979 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1757917 GTTGACTTAG
*
1757927 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1757953 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1757979 G
1 G
1757980 ATTGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1758311 original size:26 final size:26
Alignment explanation
Indices: 1758281--1758333 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1758271 GTTGACTTAG
* *
1758281 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1758307 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1758333 G
1 G
1758334 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1759361 original size:26 final size:26
Alignment explanation
Indices: 1759331--1759383 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1759321 GTTGACTTAG
*
1759331 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
*
1759357 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCACAGTCTAA
1759383 G
1 G
1759384 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAGTCTAA
Found at i:1760952 original size:26 final size:26
Alignment explanation
Indices: 1760922--1760974 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1760912 GTTGACTTAG
*
1760922 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1760948 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1760974 G
1 G
1760975 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1761308 original size:26 final size:26
Alignment explanation
Indices: 1761278--1761330 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1761268 GTTGACTTAG
*
1761278 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
*
1761304 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
1761330 G
1 G
1761331 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAATCTAA
Found at i:1762841 original size:170 final size:170
Alignment explanation
Indices: 1762527--1762842 Score: 361
Period size: 170 Copynumber: 1.9 Consensus size: 170
1762517 GGCATGCTCG
* *
1762527 TTTCGTGGGTTGACTTAGGCATACATAGTGCACTCCTAGTCTGAGATCGAACCGAACCAAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACAGAGTGCACTCCCAGTCTGAGATCGAACCGAACCAAGGGTT
** * * ****
1762592 GTGGCAGCAGGACCCGCAGTGAGATCGACAGCACGTAGAGGGGACCGGATCAATCCTTGGCTTGC
66 ACGGCAGCAGGACCAGCAGTGAGATCGACAGCACGCAGAGGGGACCGGATCAATCCCCAACTTGC
1762657 GCATCCTACCTCTCTGGCTGACTGAACGCCCGCACACTTA
131 GCATCCTACCTCTCTGGCTGACTGAACGCCCGCACACTTA
* * **
1762697 TTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCGCAGTC-GAAGATC-AGACCGGATTAAGG
1 TTTCGTGGGTTGACTTAGGCATACAGAGTGCACTCC-CAGTCTG-AGATCGA-ACCGAACCAAGG
* * * * * *
1762759 GTTACGGTAGCAGGACCAGTAGT-AGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCCAAC
63 GTTACGGCAGCAGGACCAGCAGTGA-GATCGACAGCACGCAGAGGGGACCGGATCAATCCCCAAC
* * *
1762823 TTGTGCATTCTGCCTCTCTG
127 TTGCGCATCCTACCTCTCTG
1762843 ACCGGTTGAG
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
169 6 0.05
170 113 0.95
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (170 bp):
TTTCGTGGGTTGACTTAGGCATACAGAGTGCACTCCCAGTCTGAGATCGAACCGAACCAAGGGTT
ACGGCAGCAGGACCAGCAGTGAGATCGACAGCACGCAGAGGGGACCGGATCAATCCCCAACTTGC
GCATCCTACCTCTCTGGCTGACTGAACGCCCGCACACTTA
Found at i:1763651 original size:45 final size:45
Alignment explanation
Indices: 1763510--1763669 Score: 160
Period size: 45 Copynumber: 3.6 Consensus size: 45
1763500 CGAGGCTCCG
* * *
1763510 CATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAT-GGTCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-TGGGCCCAA
** * * * * *
1763555 CATGTGCCGATGGTATTCGATGCAACCGCCTGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCTGGGCCCAA
* *
1763600 CTTGTGCCGATGGTGGTCGAGGCAACCACCCGCACCTGGGCCCAA
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCTGGGCCCAA
* * **
1763645 CGTGTGCTGATGACGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1763670 GTGCCCGTAC
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCTGGGCCCAA
Found at i:1764739 original size:170 final size:170
Alignment explanation
Indices: 1764425--1764740 Score: 361
Period size: 170 Copynumber: 1.9 Consensus size: 170
1764415 TGCATGCTCG
* *
1764425 TTTCGTGGGTTGACTTAGGCATACATAGTGCACTCCTAGTCTGAGATCGAACCGAACCAAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACAGAGTGCACTCCCAGTCTGAGATCGAACCGAACCAAGGGTT
** * * ****
1764490 GTGGCAGCAGGACCCGCAGTGAGATCGACAGCACGTAGAGGGGACCGGATCAATCCTTGGCTTGC
66 ACGGCAGCAGGACCAGCAGTGAGATCGACAGCACGCAGAGGGGACCGGATCAATCCCCAACTTGC
1764555 GCATCCTACCTCTCTGGCTGACTGAACGCCCGCACACTTA
131 GCATCCTACCTCTCTGGCTGACTGAACGCCCGCACACTTA
* * **
1764595 TTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCGCAGTC-GAAGATC-AGACCGGATTAAGG
1 TTTCGTGGGTTGACTTAGGCATACAGAGTGCACTCC-CAGTCTG-AGATCGA-ACCGAACCAAGG
* * * * * *
1764657 GTTACGGTAGCAGGACCAGTAGT-AGGATCGACAGCACGCAGGGGGGACTGGGTCGATCCCCAAC
63 GTTACGGCAGCAGGACCAGCAGTGA-GATCGACAGCACGCAGAGGGGACCGGATCAATCCCCAAC
* * *
1764721 TTGTGCATTCTGCCTCTCTG
127 TTGCGCATCCTACCTCTCTG
1764741 ACCGGTTGAG
Statistics
Matches: 119, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
169 6 0.05
170 113 0.95
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (170 bp):
TTTCGTGGGTTGACTTAGGCATACAGAGTGCACTCCCAGTCTGAGATCGAACCGAACCAAGGGTT
ACGGCAGCAGGACCAGCAGTGAGATCGACAGCACGCAGAGGGGACCGGATCAATCCCCAACTTGC
GCATCCTACCTCTCTGGCTGACTGAACGCCCGCACACTTA
Found at i:1765550 original size:45 final size:45
Alignment explanation
Indices: 1765409--1765568 Score: 160
Period size: 45 Copynumber: 3.6 Consensus size: 45
1765399 CGAGGCTCCG
* * *
1765409 CATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAT-GGTCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-TGGGCCCAA
** * * * * *
1765454 CATGTGCCGATGGTATTCGATGCAACCGCCTGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCTGGGCCCAA
* *
1765499 CTTGTGCCGATGGTGGTCGAGGCAACCACCCGCACCTGGGCCCAA
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCTGGGCCCAA
* * **
1765544 CGTGTGCTGATGACGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1765569 GTGCCCGTAC
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCTGGGCCCAA
Found at i:1767353 original size:45 final size:44
Alignment explanation
Indices: 1767274--1767434 Score: 178
Period size: 45 Copynumber: 3.6 Consensus size: 44
1767264 CCGAGGCTCG
* * * *
1767274 GCTTGTGTCAATGGTGGTCGTGGCAACCACCTGCACCACGGCCCA
1 GCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCA-GGCCCA
* * * * *
1767319 GCATGTGCCGATGGTGTTCGATGCAATCGCCTGCACCAGAGGCCA
1 GCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAG-GCCCA
* * *
1767364 TCTTGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCA
1 GCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGCACC-AGGCCCA
*
1767409 GCTTGTGCCGATGGTAGTCGAGGCAA
1 GCTTGTGCCGATGGTGGTCGAGGCAA
1767435 GTGCCCGTAC
Statistics
Matches: 94, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.01
45 91 0.97
46 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.19
Consensus pattern (44 bp):
GCTTGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAGGCCCA
Found at i:1767461 original size:45 final size:45
Alignment explanation
Indices: 1767306--1767484 Score: 130
Period size: 45 Copynumber: 4.0 Consensus size: 45
1767296 GCAACCACCT
* * * * * *
1767306 GCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAA-TCGCCT
1 GCACCAAGGCCCACCCTGTGCCGATGGTGGTCGAGGCAAGT-GCCC
* * * **
1767351 GCACCAGAGG-CCATCTTGTGCCAATGGTGGTCGAGGCAACCGCCC
1 GCACCA-AGGCCCACCCTGTGCCGATGGTGGTCGAGGCAAGTGCCC
* * *
1767396 GCACCAAGGCCCAGCTTGTGCCGATGGTAGTCGAGGCAAGTGCCC
1 GCACCAAGGCCCACCCTGTGCCGATGGTGGTCGAGGCAAGTGCCC
* * * * * *
1767441 GTACCAAAGG-GCACCCTGTGCTGATGATGGTCGATGCATGTGCC
1 GCACC-AAGGCCCACCCTGTGCCGATGGTGGTCGAGGCAAGTGCC
1767485 ATCACCATGC
Statistics
Matches: 108, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
44 3 0.03
45 99 0.92
46 6 0.06
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (45 bp):
GCACCAAGGCCCACCCTGTGCCGATGGTGGTCGAGGCAAGTGCCC
Found at i:1767461 original size:90 final size:90
Alignment explanation
Indices: 1767277--1767461 Score: 221
Period size: 90 Copynumber: 2.1 Consensus size: 90
1767267 AGGCTCGGCT
* * * * *
1767277 TGTGTCAATGGTGGTCGTGGCAACCACCTGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCAATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGG
* * * *
1767342 CAATCGCCTGCACCAGAGGCCATCT
66 CAATCGCCCGCACCAAAGGCCACCC
* *
1767367 TGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGTAG-TCGAG
1 TGTGCCAATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAG
* *
1767431 GCAAGT-GCCCGTACCAAAGGGCACCC
65 GCAA-TCGCCCGCACCAAAGGCCACCC
1767457 TGTGC
1 TGTGC
1767462 TGATGATGGT
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
90 78 0.98
91 2 0.03
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (90 bp):
TGTGCCAATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGG
CAATCGCCCGCACCAAAGGCCACCC
Found at i:1768257 original size:26 final size:26
Alignment explanation
Indices: 1768228--1768280 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1768218 GTTGACTTAG
1768228 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
1768254 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1768280 G
1 G
1768281 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1775359 original size:45 final size:45
Alignment explanation
Indices: 1775310--1775440 Score: 138
Period size: 45 Copynumber: 2.9 Consensus size: 45
1775300 GTTTGATACG
* * *
1775310 ACCGCCCGGACCAGGGGCCATCTTGTGCCAATGATGGTTGAGGCA
1 ACCGCCCGCACCAGGGGCCAGCTTGTGCCAATGATGGTCGAGGCA
* * * * *
1775355 ACCGCCCGCACCAGGGCCCAGCTTCTGTCGATGGTGGTCGAGGCA
1 ACCGCCCGCACCAGGGGCCAGCTTGTGCCAATGATGGTCGAGGCA
** * *
1775400 AGTGCCCGTACCAAAGGG-CAGCTTGTGCCAATGATGGTCGA
1 ACCGCCCGCACC-AGGGGCCAGCTTGTGCCAATGATGGTCGA
1775441 TGCATGTGCC
Statistics
Matches: 68, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
45 65 0.96
46 3 0.04
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
ACCGCCCGCACCAGGGGCCAGCTTGTGCCAATGATGGTCGAGGCA
Found at i:1775457 original size:45 final size:45
Alignment explanation
Indices: 1775389--1775488 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
1775379 CTGTCGATGG
* *
1775389 TGGTCGAGGCAAGTGCCCGTACCAAAGGGCAGCTTGTGCCAATGA
1 TGGTCGAGGCAAGTGCCAGTACCAAAGGGCAGCATGTGCCAATGA
* * * * * * * *
1775434 TGGTCGATGCATGTGCCATTACCATATGTCATCATGTGCCATTGA
1 TGGTCGAGGCAAGTGCCAGTACCAAAGGGCAGCATGTGCCAATGA
1775479 TGGTCGAGGC
1 TGGTCGAGGC
1775489 CTTGGTCGAA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (45 bp):
TGGTCGAGGCAAGTGCCAGTACCAAAGGGCAGCATGTGCCAATGA
Found at i:1776370 original size:26 final size:26
Alignment explanation
Indices: 1776341--1776393 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1776331 GTTGACTTAG
1776341 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1776367 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1776393 G
1 G
1776394 ATCAGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1776735 original size:26 final size:26
Alignment explanation
Indices: 1776697--1776747 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1776687 TCACTTAGGC
* * *
1776697 ATACGGAGTTCATTCCTAGCCTAAGT
1 ATACAGAGCTCATTCCCAGCCTAAGT
*
1776723 ATACAGAGCTCATTCCCAGTCTAAG
1 ATACAGAGCTCATTCCCAGCCTAAG
1776748 ATCAAATCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGCTCATTCCCAGCCTAAGT
Found at i:1777570 original size:26 final size:26
Alignment explanation
Indices: 1777534--1777586 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1777524 GTTGACTTAG
1777534 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
1777560 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1777586 G
1 G
1777587 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1778318 original size:45 final size:45
Alignment explanation
Indices: 1778235--1778381 Score: 134
Period size: 45 Copynumber: 3.3 Consensus size: 45
1778225 ATGCCAATGA
* * * * * * *
1778235 TGGTTGAGGCAACCTCCCACACCACGACCCAACATGTGCCGATTG
1 TGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATAG
* * * * *
1778280 TGTTCGATGCAACCGCCTACACCAAGGG-CCATCTTGTGCCAATAG
1 TGGTCGAGGCAACCGCCCACACC-AGGGCCCAGCTTGTGCCGATAG
* * * *
1778325 TGGTCAAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGTCGATGG
1 TGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATAG
1778370 TGGTCGAGGCAA
1 TGGTCGAGGCAA
1778382 GTACCCGTAC
Statistics
Matches: 79, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
44 4 0.05
45 73 0.92
46 2 0.03
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.18
Consensus pattern (45 bp):
TGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATAG
Found at i:1778509 original size:26 final size:26
Alignment explanation
Indices: 1778478--1778533 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
1778468 TGAGTTGACT
* *
1778478 TAAGCATACGGAGTTCATTCCCATTC
1 TAAGCATACAGAGTTCATTCCCAGTC
1778504 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
1778530 TAAG
1 TAAG
1778534 ATCGGATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:1778707 original size:26 final size:26
Alignment explanation
Indices: 1778678--1778728 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1778668 GTAGGCTTAG
* *
1778678 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1778704 GCATATGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1778729 CAATCGAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1779252 original size:45 final size:44
Alignment explanation
Indices: 1779180--1779336 Score: 125
Period size: 45 Copynumber: 3.5 Consensus size: 44
1779170 TCAGGGCTCG
* *
1779180 GCATGTGCCAATGATGGTCGAGCCAACCACCCGCACCATAGCCCA
1 GCATGTGCCAATGGTGGTCGAG-CAACCACCCGCACCAGAGCCCA
* * * * * *
1779225 GCATGTGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCA
1 GCATGTGCCAATGGTGGTCGA-GCAACCACCCGCACCAGAGCCCA
* * * * * *
1779270 TCTTGTGCCAATGGTGGTCGAGGCAGCCACCCGTACCAGGGCTCA
1 GCATGTGCCAATGGTGGTCGA-GCAACCACCCGCACCAGAGCCCA
* * * *
1779315 GCTTGTGTCGATGGCGGTCGAG
1 GCATGTGCCAATGGTGGTCGAG
1779337 GCAAGTGCTC
Statistics
Matches: 88, Mismatches: 23, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
44 1 0.01
45 86 0.98
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (44 bp):
GCATGTGCCAATGGTGGTCGAGCAACCACCCGCACCAGAGCCCA
Found at i:1779322 original size:959 final size:945
Alignment explanation
Indices: 1777515--1779663 Score: 2425
Period size: 959 Copynumber: 2.3 Consensus size: 945
1777505 CTGCACACTT
* * * *
1777515 GTTTTGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATAGAGTTCATTCCTA
1 GTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
* * * * *
1777580 GTCTAAGATCGAATCGGATCGAA-GGTTGCGACAGTAAGACTAGCAGTAGGATCGACAG-A-CAT
66 GTCTAAGATCGGATCGGA-CCAAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGACAGCACCA-
* * * * * *
1777642 AGGGGGGACCGGGCCGATCCCCAGCTTGCGCATTCTGCCTGTCCATCCGGCTGAGCGCCCGCGCG
129 AGGGGGGA-CAGGCCGATCCTCAGCTT-TGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACG
* * ** * * * *
1777707 CTCGTTTCATGGGTTGACTTACGCATATAAAGTTGAGTCCCAGTCTAAGCATATGGAGTTGATTC
192 CTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCA-TTCCAGTCTAAGCATATGAAGTTCATTC
* * * *
1777772 CTGATCTAAGATCGGACTGACAGTAGCACGCAGAGGGGGACTGGGCCAATCCTCGAATTGTGCAT
256 CAGATCTAAGATCGGACTGACAGCAGCACGCAGAGAGGGACTGAGCCAATCCTCGAATTGTGCAT
* * * *
1777837 CCTGCCTCTCCGACCGACAGAGCGCCCGTACGCTCGTTTCGTGGCTTGACTTAGGCATACGAAGT
321 CCTGCCTCTCCGACCGACAGAGCGCCAGCACGCTCGTTTCGTGGCTTGACTTAGGCATACAAAAT
* * * * *
1777902 TCATTCCCGATCTAAGCTCGAACTGGACCAAGGGACCCACAGCGAGATCGGTAGCATGTAGAGAG
386 TCATTCCCGATCTAAGCCCAAACTGGACCAAGAGACCCACAGCGAGATCGGTAGCACGCAGAGAG
* * * * * * * *
1777967 GGACTAGGCCGATCCTCGGCTTACACATTCTGGCTCTTCGGCTTGCTGAGTGCCCGCATGCTCGT
451 GGACCAGACCAATCCTCGACTTACACATTCTGGCTCTTCGACTGGCTGAGTGCCCGCACGCTCAT
*
1778032 TTCATGGGTTGACTTAGGCATACGTAGTGCATTCCCGATCTCGACCAACCAAGGGCCAGAGGCTA
516 TTCATGGGTTGACTTAGGCATACGTACTGCATTCCCGATCTCGACCAACCAAGGGCCAGAGGCTA
* ** * * * **
1778097 TCGACGGCATTTGGGGCAACAATCGAGGGGGACCAACAGCGGGATCCTTGGTTGACTCATGCATC
581 TCGACGACATTTGGCACAACAACCAAGGGGGACCAACAGCGCGATCCTTGGGCGACTCATGCATC
* * * * * * *
1778162 CCGCCCGCAGTGGTCAGTTCGGTGCTTGCACGCTCGTTTTAGGGGTCGATCGAGGCTCGGCATAT
646 CCACCCGCAATGGTCAGTTCGATGCTCGCACGCTCATTTCAGGGGCCGATCGAGGCTCGGCATAT
* * * * *
1778227 GCCAATGATGGTTGAGGCAACCTCCCACACCACGACCCAACATGTGCCGATTGTGTTCGATGCAA
711 GCCAATGATGGTCGAGCCAACCACCCACACCAAGACCCAACATGTGCCGATGGTGTTCGATGCAA
*
1778292 CCGCCTACACCAAGGGCCATCTTGTGCCAATAGTGGTCAAGGCAACCGCCCGCACCAGGGCCCAG
776 CCGCCTACACCAAGGGCCATCTTGTGCCAATAGTGGTCAAGGCAACCACCCGCACCAGGGCCCAG
* * *
1778357 CTTGTGTCGATGGTGGTCGAGGCAAGTACCCGTACCAAAGGGCAGCCTGTGTCGATGACAGTCGA
841 CTTGTGTCGATGGCGGTCGAGGCAAGTACCCATACCAAAGGGCAGCCTGTGCCGATGACAGTCGA
* *
1778422 TGCATCCTGCCTCTCTAGCCGATTGAGCGCCCATACGCTC
906 TGCATCCTACCTCTCTAGCCGATTGAGCACCCATACGCTC
* * * *
1778462 GTTT-GATGAGTTGACTTAAGCATACGGAGTTCATTCCCATTCTAAGCATACAGAGTTCATTCCC
1 GTTTCG-TGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCC
*
1778526 AGTCTAAGATCGGATCGGACCAAGGGTTACGACAGCAGGACCAGCAGTAGGATCGACAGCACGCA
65 AGTCTAAGATCGGATCGGACCAAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGACAGCAC-CA
* *
1778591 AGGGGGGATCAGGCCGATCGTCAGCTTATGCATTCTGCCTCTCC-GCCTGGTTGAGCGCCCGCAC
129 AGGGGGGA-CAGGCCGATCCTCAGCTT-TGCATTCTGCCTCTCCAGCC-GGCTGAGCGCCCGCAC
* * * *
1778655 GCTCGTTCCGTGGGTAGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGAAGTTCATT
191 GCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCC-AGTCTAAGCATATGAAGTTCATT
* **
1778720 CCCAG-TCTACA-ATCGAACCAGCAGTAGGATCGATAGCAGCACGCAGA-AGGGA-TCGAGCTGA
255 -CCAGATCTA-AGATCG-----G-ACT--GA-C---AGCAGCACGCAGAGAGGGACT-GAGCCAA
* * * * *
1778781 TCCTCGACTTGCT-CATCCTGCCT-TCTCGATCGGCTGAGCGCCAGCACGCTCGTCTT-GTGGGT
305 TCCTCGAATTG-TGCATCCTGCCTCTC-CGACCGACAGAGCGCCAGCACGCTCGT-TTCGTGGCT
* * * ** *** *
1778843 TGACTTAGGGATACAAAATTCATTCCCGGTCTAAGCCCAAATTGGACTGAGAGACCTGTAGTGAG
367 TGACTTAGGCATACAAAATTCATTCCCGATCTAAGCCCAAACTGGACCAAGAGACCCACAGCGAG
* *
1778908 ATCGGTAGCACGCAGAG-GGAGACCAGACCAATCCTCGACTTACGCATTTTGGCT-TTCCGACTG
432 ATCGGTAGCACGCAGAGAGG-GACCAGACCAATCCTCGACTTACACATTCTGGCTCTT-CGACTG
* * *
1778971 GCTGAGTGCCTGCACGTTCATTTCATGGGTTGACTTAGTCATACGTACTGCATTCCCGATCTCGA
495 GCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGTACTGCATTCCCGATCTCGA
* * * * *
1779036 -GAACCAAGGGCCAGAGGCTATCGACGACGTTTGGCATAACAACCAAGGGGGACCAGCAGTGCGA
560 CCAACCAAGGGCCAGAGGCTATCGACGACATTTGGCACAACAACCAAGGGGGACCAACAGCGCGA
* * * ** * *
1779100 TCCTTGGGCGGCTCTTGCTTCCCACCC-CTAATGGTTGGTTCGATGCTCGTACGCTCATTTCGGG
625 TCCTTGGGCGACTCATGCATCCCACCCGC-AATGGTCAGTTCGATGCTCGCACGCTCATTTCAGG
* * *
1779164 GGCCGATC-AGGGCTCGGCATGTGCCAATGATGGTCGAGCCAACCACCCGCACCATAG-CCCAGC
689 GGCCGATCGA-GGCTCGGCATATGCCAATGATGGTCGAGCCAACCACCCACACCA-AGACCCAAC
* * * *
1779227 ATGTGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCATCTTGTGCCAATGGTGGTCGAG
752 ATGTGCCGATGGTGTTCGATGCAACCGCCTACACCAAGGGCCATCTTGTGCCAATAGTGGTCAAG
* * * * *
1779292 GCAGCCACCCGTACCAGGGCTCAGCTTGTGTCGATGGCGGTCGAGGCAAGTGCTCATACCAAAGG
817 GCAACCACCCGCACCAGGGCCCAGCTTGTGTCGATGGCGGTCGAGGCAAGTACCCATACCAAAGG
* ** * * * *
1779357 GCAGTCTGTGCCGATGATGGTCGATGCATCTTACCTCTCTGGCCGGTTGAGCACCCATACGCTT
882 GCAGCCTGTGCCGATGACAGTCGATGCATCCTACCTCTCTAGCCGATTGAGCACCCATACGCTC
* *
1779421 GTTTCGTGGGTTGACTTCGGCATACAGAGTTCATCCCCAGTCTAAGCATAC-GAAGTTCATTCCC
1 GTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAG-AGTTCATTCCC
* * * * * *
1779485 AGTCTAAGAAT-TGATCGGACCGAGGGTTGGGACAGCAGGACCAGCAGCAGAATCGATAGCA-CA
65 AGTCTAAG-ATCGGATCGGACCAAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGACAGCACCA
* * * * * *
1779548 TAAGGGGGACCGAACCGATCCTCAAC-TTGCATATTCTGCCTCTCCAGCCAGCTGAGCACCCGCA
129 -AGGGGGGACAG-GCCGATCCTCAGCTTTGC--ATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCA
*
1779612 CACTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGC
190 CGCTCGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCA-GTCTAAGC
1779664 CGTAGCCAGA
Statistics
Matches: 1001, Mismatches: 162, Indels: 67
0.81 0.13 0.05
Matches are distributed among these distances:
946 4 0.00
947 104 0.10
948 6 0.01
949 108 0.11
950 6 0.01
954 1 0.00
955 2 0.00
956 3 0.00
957 8 0.01
958 91 0.09
959 437 0.44
960 216 0.22
961 15 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (945 bp):
GTTTCGTGAGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCA
GTCTAAGATCGGATCGGACCAAGGGTTGCGACAGCAGGACCAGCAGTAGGATCGACAGCACCAAG
GGGGGACAGGCCGATCCTCAGCTTTGCATTCTGCCTCTCCAGCCGGCTGAGCGCCCGCACGCTCG
TTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCAGTCTAAGCATATGAAGTTCATTCCAGAT
CTAAGATCGGACTGACAGCAGCACGCAGAGAGGGACTGAGCCAATCCTCGAATTGTGCATCCTGC
CTCTCCGACCGACAGAGCGCCAGCACGCTCGTTTCGTGGCTTGACTTAGGCATACAAAATTCATT
CCCGATCTAAGCCCAAACTGGACCAAGAGACCCACAGCGAGATCGGTAGCACGCAGAGAGGGACC
AGACCAATCCTCGACTTACACATTCTGGCTCTTCGACTGGCTGAGTGCCCGCACGCTCATTTCAT
GGGTTGACTTAGGCATACGTACTGCATTCCCGATCTCGACCAACCAAGGGCCAGAGGCTATCGAC
GACATTTGGCACAACAACCAAGGGGGACCAACAGCGCGATCCTTGGGCGACTCATGCATCCCACC
CGCAATGGTCAGTTCGATGCTCGCACGCTCATTTCAGGGGCCGATCGAGGCTCGGCATATGCCAA
TGATGGTCGAGCCAACCACCCACACCAAGACCCAACATGTGCCGATGGTGTTCGATGCAACCGCC
TACACCAAGGGCCATCTTGTGCCAATAGTGGTCAAGGCAACCACCCGCACCAGGGCCCAGCTTGT
GTCGATGGCGGTCGAGGCAAGTACCCATACCAAAGGGCAGCCTGTGCCGATGACAGTCGATGCAT
CCTACCTCTCTAGCCGATTGAGCACCCATACGCTC
Found at i:1779470 original size:26 final size:26
Alignment explanation
Indices: 1779440--1779492 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1779430 GTTGACTTCG
1779440 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
1779466 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1779492 G
1 G
1779493 AATTGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1779831 original size:26 final size:26
Alignment explanation
Indices: 1779795--1779847 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1779785 GTTGACTTAG
*
1779795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1779821 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1779847 G
1 G
1779848 ATCGAACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1780401 original size:45 final size:45
Alignment explanation
Indices: 1780302--1780447 Score: 139
Period size: 45 Copynumber: 3.2 Consensus size: 45
1780292 GGGCTCGGCA
* * * ** * * **
1780302 TGTGCCGATGGTGGTCGAGGAAATTACCCGCACCACGGCCCAGAA
1 TGTGCCGATGGTGGCCAAGGCAACCACCCGCACCAGGGGCCAGCT
** * * * *
1780347 TGTGCCGATGGTGTTCAATGCAACCGCCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGCCAAGGCAACCACCCGCACCAGGGGCCAGCT
* *
1780392 TGTGTCGATGGTGGCCGAGGCAACCACCCGCACCAGGGGCCAGCT
1 TGTGCCGATGGTGGCCAAGGCAACCACCCGCACCAGGGGCCAGCT
1780437 TGTGCCGATGG
1 TGTGCCGATGG
1780448 CGGTTGAAGC
Statistics
Matches: 79, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 79 1.00
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGCCAAGGCAACCACCCGCACCAGGGGCCAGCT
Found at i:1788165 original size:26 final size:26
Alignment explanation
Indices: 1788135--1788187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1788125 GTTAACTTAG
* *
1788135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
1788161 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
1788187 G
1 G
1788188 ATCAAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:1789771 original size:26 final size:26
Alignment explanation
Indices: 1789741--1789792 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1789731 GTTGACTTAG
*
1789741 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1789767 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1789793 AATCAGACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1792125 original size:45 final size:45
Alignment explanation
Indices: 1792061--1792169 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
1792051 TCGGCATGTG
* * * * * *
1792061 CCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTA
1 CCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTA
*
1792106 CCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTA
* *
1792151 CCGATGGCGGTCAAGGCAA
1 CCGATGGTGGTCGAGGCAA
1792170 GTGCCTGTAC
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTA
Found at i:1793505 original size:26 final size:26
Alignment explanation
Indices: 1793469--1793521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1793459 GTTAACTTAG
*
1793469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
1793495 GCATACCGAGTTCATTCCCTGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
1793521 G
1 G
1793522 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:1794039 original size:45 final size:44
Alignment explanation
Indices: 1793971--1794121 Score: 158
Period size: 45 Copynumber: 3.4 Consensus size: 44
1793961 GCATGTGTCA
* * *
1793971 ATGGTGGTCGATGTAATCGCCCGCACCAGGGGCCATCTCGTGCCG
1 ATGGTGGTCGAGGCAATCGCCCGCACCA-GGGCCAGCTCGTGCCG
* *** *
1794016 ATGGTGGTCGAGGCAATCACCCGCACCAAGGGTTGGCACGTGCCG
1 ATGGTGGTCGAGGCAATCGCCCGCACC-AGGGCCAGCTCGTGCCG
* * *
1794061 ATGGTGATCGAGGCAATCGCCCACACCAGGGCCTAGCTTGTGCCG
1 ATGGTGGTCGAGGCAATCGCCCGCACCAGGGCC-AGCTCGTGCCG
**
1794106 ATGGCAGTCGAGGCAA
1 ATGGTGGTCGAGGCAA
1794122 GTGCCCGTAC
Statistics
Matches: 85, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
44 4 0.05
45 80 0.94
46 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (44 bp):
ATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCAGCTCGTGCCG
Found at i:1794134 original size:90 final size:91
Alignment explanation
Indices: 1793971--1794139 Score: 209
Period size: 90 Copynumber: 1.9 Consensus size: 91
1793961 GCATGTGTCA
* * * * * **
1793971 ATGGTGGTCGATGTAATCGCCCGCACCAGGGGCCATCTCGTGCCGATGGTGGTCGAGGCAATCAC
1 ATGGTGATCGAGGCAATCGCCCACACCAGGGGCCAGCTCGTGCCGATGGCAGTCGAGGCAATCAC
1794036 CCGCACC-AAGGGTTGGCACGTGCCG
66 CCGCACCAAAGGGTTGGCACGTGCCG
*
1794061 ATGGTGATCGAGGCAATCGCCCACACCA-GGGCCTAGCTTGTGCCGATGGCAGTCGAGGCAAGT-
1 ATGGTGATCGAGGCAATCGCCCACACCAGGGGCC-AGCTCGTGCCGATGGCAGTCGAGGCAA-TC
* *
1794124 GCCCGTACCAAAGGGT
64 ACCCGCACCAAAGGGT
1794140 AGCCTATGCC
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
89 5 0.08
90 54 0.82
91 7 0.11
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (91 bp):
ATGGTGATCGAGGCAATCGCCCACACCAGGGGCCAGCTCGTGCCGATGGCAGTCGAGGCAATCAC
CCGCACCAAAGGGTTGGCACGTGCCG
Found at i:1795094 original size:26 final size:26
Alignment explanation
Indices: 1795065--1795117 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1795055 GTTGACTTAG
1795065 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
1795091 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1795117 G
1 G
1795118 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1795436 original size:26 final size:26
Alignment explanation
Indices: 1795402--1795452 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1795392 TGACTTAGGT
*
1795402 ATACGGAGTTCATTCCCAATCTAAGC
1 ATACAGAGTTCATTCCCAATCTAAGC
*
1795428 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAATCTAAG
1795453 ATCGGGCCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAATCTAAGC
Found at i:1796970 original size:26 final size:26
Alignment explanation
Indices: 1796940--1796992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1796930 GTTGACTTAG
*
1796940 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1796966 GCATATGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1796992 G
1 G
1796993 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1797316 original size:26 final size:26
Alignment explanation
Indices: 1797280--1797332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1797270 GTTGACTTAG
1797280 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1797306 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1797332 G
1 G
1797333 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1804609 original size:26 final size:26
Alignment explanation
Indices: 1804579--1804631 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1804569 GTTGACTTAG
*
1804579 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
1804605 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1804631 G
1 G
1804632 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1804959 original size:26 final size:26
Alignment explanation
Indices: 1804922--1804974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1804912 GTTGACTTAG
*
1804922 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1804948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1804974 G
1 G
1804975 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1805475 original size:45 final size:45
Alignment explanation
Indices: 1805424--1805571 Score: 154
Period size: 45 Copynumber: 3.3 Consensus size: 45
1805414 CAGGGCTCGG
* *
1805424 CATGTGCCGATGGTGGTTGAGGCAACTACCCGCACCACGGCCCAA
1 CATGTGCCGATGGTGGTTGAGGCAACCACCCGCACCAGGGCCCAA
* * * *
1805469 CATGTGCCGATGGT-GTTCGATGCAACCGCCCGCACCAGGGGCCGA
1 CATGTGCCGATGGTGGTT-GAGGCAACCACCCGCACCAGGGCCCAA
* * * * ** *
1805514 CATGTGTCAATGGTGATCGAGGCAACCACCTACACCAGGGCCCAG
1 CATGTGCCGATGGTGGTTGAGGCAACCACCCGCACCAGGGCCCAA
*
1805559 CTTGTGCCGATGG
1 CATGTGCCGATGG
1805572 CTAACGAGGC
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
44 3 0.04
45 77 0.95
46 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTTGAGGCAACCACCCGCACCAGGGCCCAA
Found at i:1806554 original size:26 final size:26
Alignment explanation
Indices: 1806507--1806559 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1806497 GTTGACTTAG
*
1806507 GCATACGGAGTTCATCTCCAGTTTAA
1 GCATACGGAGTTCATCTCCAGTCTAA
1806533 GCATACGGAGTTCAT-TCTCAGTCTAA
1 GCATACGGAGTTCATCTC-CAGTCTAA
1806559 G
1 G
1806560 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAGTCTAA
Found at i:1808316 original size:26 final size:26
Alignment explanation
Indices: 1808271--1808323 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1808261 TTTGACTTAG
1808271 GCATATGAAGTGCATCCCCAGTCTAA
1 GCATATGAAGTGCATCCCCAGTCTAA
* * *
1808297 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTGCATCCCCAGTCTAA
1808323 G
1 G
1808324 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGAAGTGCATCCCCAGTCTAA
Found at i:1810054 original size:26 final size:26
Alignment explanation
Indices: 1810018--1810070 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1810008 GTTGACTTAG
* *
1810018 GCATACGGAGTTGATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1810044 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1810070 G
1 G
1810071 ACCAGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1810560 original size:45 final size:45
Alignment explanation
Indices: 1810510--1810755 Score: 192
Period size: 45 Copynumber: 5.5 Consensus size: 45
1810500 ACAAGGCTCC
* *
1810510 GCATGTGTCGATGGTGGTCGAGGCAACCGCCCGTACCA-TGGCCTA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGGCC-A
* * *
1810555 GCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGGCCA
* * * * * * *
1810600 TCTTGTGCCGATGGTTGTCGAGGCAATCGCCCATACCAAGGGCCG
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGGCCA
* * * * * * * *
1810645 GCTTATGCCGATGGTGATTGAGCCAACCGCCCGCACCAAGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGGCCA
* * * ** *
1810690 GCTTGTGCCAATGGCGG-CTGAGGCAAGTGCCCGTACCAAAGGG-CA
1 GCATGTGCCGATGGTGGTC-GAGGCAACCGCCCGTACC-AGGGGCCA
* *
1810735 GCCTGTGCCGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
1810756 TGCATGTGCC
Statistics
Matches: 157, Mismatches: 40, Indels: 8
0.77 0.20 0.04
Matches are distributed among these distances:
45 148 0.94
46 9 0.06
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGGCCA
Found at i:1810672 original size:90 final size:90
Alignment explanation
Indices: 1810513--1810703 Score: 226
Period size: 90 Copynumber: 2.1 Consensus size: 90
1810503 AGGCTCCGCA
* * * *
1810513 TGTGTCGATGGTGGTCGAGGCAACCGCCCGTACCATGGCCTAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCATACCAGGGCCTAGCATATGCCGATGGTGTTCGATG
* * *
1810578 CAACCGCCCGCACCAGGGGCCATCT
66 CAACCGCCCGCACCAAGGCCCAGCT
* * * *
1810603 TGTGCCGATGGTTGTCGAGGCAATCGCCCATACCAAGGGCC-GGCTTATGCCGATGGTGATT-GA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCATACC-AGGGCCTAGCATATGCCGATGGTG-TTCGA
1810666 -GCCAACCGCCCGCACCAAGGCCCAGCT
64 TG-CAACCGCCCGCACCAAGGCCCAGCT
*
1810693 TGTGCCAATGG
1 TGTGCCGATGG
1810704 CGGCTGAGGC
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
89 1 0.01
90 78 0.91
91 7 0.08
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCATACCAGGGCCTAGCATATGCCGATGGTGTTCGATG
CAACCGCCCGCACCAAGGCCCAGCT
Found at i:1810713 original size:90 final size:91
Alignment explanation
Indices: 1810560--1810759 Score: 214
Period size: 90 Copynumber: 2.2 Consensus size: 91
1810550 GCCTAGCATG
* * * * **
1810560 TGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTTGTCGAGGCA
1 TGCCGATGGTGTTCGATGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCAATGGCGGTCGAGGCA
1810625 A-TCGCCCATACC-AAGGGCCGGCTTA
66 AGT-GCCCATACCAAAGGGCCGGCTTA
1810650 TGCCGATGGTGATT-GA-GCCAACCGCCCGCACCAAGGCCCAGCTTGTGCCAATGGCGG-CTGAG
1 TGCCGATGGTG-TTCGATG-CAACCGCCCGCACCAAGGCCCAGCTTGTGCCAATGGCGGTC-GAG
* * * *
1810712 GCAAGTGCCCGTACCAAAGGG-CAGCCTG
63 GCAAGTGCCCATACCAAAGGGCCGGCTTA
* *
1810740 TGCCGATGATGGTCGATGCA
1 TGCCGATGGTGTTCGATGCA
1810760 TGTGCCATCA
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
89 3 0.03
90 79 0.87
91 9 0.10
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (91 bp):
TGCCGATGGTGTTCGATGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCAATGGCGGTCGAGGCA
AGTGCCCATACCAAAGGGCCGGCTTA
Found at i:1811535 original size:45 final size:44
Alignment explanation
Indices: 1811444--1811593 Score: 158
Period size: 45 Copynumber: 3.3 Consensus size: 44
1811434 ATGTTCCATT
* * * * * *
1811444 TGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGCCGA
1 TGGTGATCGAGGCAATCACCCGCACCA-GGGCCAGCTTGTGTCGA
* *
1811489 TGGTGGTCGAGGCAATCACCCGTC-CCATGGGCCAGCATGTGTCGA
1 TGGTGATCGAGGCAATCACCCG-CACCA-GGGCCAGCTTGTGTCGA
* *
1811534 TGGTGATCGAGGCAATCGCCTGCACCAGGGCCCAGCTTGTGTCGA
1 TGGTGATCGAGGCAATCACCCGCACCAGGG-CCAGCTTGTGTCGA
*
1811579 TGGCGATCGAGGCAA
1 TGGTGATCGAGGCAA
1811594 GTGCCTGTAA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
44 4 0.04
45 84 0.94
46 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.19
Consensus pattern (44 bp):
TGGTGATCGAGGCAATCACCCGCACCAGGGCCAGCTTGTGTCGA
Found at i:1812909 original size:26 final size:26
Alignment explanation
Indices: 1812880--1812930 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1812870 TGACTTAGGT
*
1812880 ATACGGAGTTCATTCATAGTCTAAGC
1 ATACGGAGTTCATTCACAGTCTAAGC
*
1812906 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCACAGTCTAAG
1812931 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCACAGTCTAAGC
Found at i:1813439 original size:45 final size:44
Alignment explanation
Indices: 1813366--1813585 Score: 125
Period size: 45 Copynumber: 4.9 Consensus size: 44
1813356 GACCGGGGCT
* * *
1813366 CAGCATGTGTCGATGATAGTCGAGGCAACTGCCCACACCACGACC
1 CAGCATGTGCCGATGGT-GTCGAGGCAACTGCCCGCACCACGACC
* * * **
1813411 CAGCATGTGCCGATGGTGTTCGATGCAACTTCCCGCACCAGGGGC
1 CAGCATGTGCCGATGGTG-TCGAGGCAACTGCCCGCACCACGACC
* * * * * **
1813456 AATCTTGTGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGC
1 CAGCATGTGCCGATGGT-GTCGAGGCAACTGCCCGCACCACGACC
** * * ** * * * *
1813501 TGGCATGTGACAATGGTGATCGAGATAACCGCCCACACCAGGGCC
1 CAGCATGTGCCGATGGTG-TCGAGGCAACTGCCCGCACCACGACC
* * * * *
1813546 CAGCTTGTGTCGATGGCGGTCGAGGCAAGTGCCCGTACCA
1 CAGCATGTGCCGATGG-TGTCGAGGCAACTGCCCGCACCA
1813586 AAGGGCAGCT
Statistics
Matches: 131, Mismatches: 40, Indels: 8
0.73 0.22 0.04
Matches are distributed among these distances:
44 2 0.02
45 127 0.97
46 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (44 bp):
CAGCATGTGCCGATGGTGTCGAGGCAACTGCCCGCACCACGACC
Found at i:1814906 original size:26 final size:26
Alignment explanation
Indices: 1814870--1814922 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1814860 GCTGACGTAG
*
1814870 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1814896 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1814922 G
1 G
1814923 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1815573 original size:45 final size:46
Alignment explanation
Indices: 1815401--1815579 Score: 150
Period size: 45 Copynumber: 4.0 Consensus size: 46
1815391 CTGTACCACA
* * * * *
1815401 GCCCAGCATGTACCGATGGTGTTCGATGCAACTGCCCGCACCAAGG
1 GCCCAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAAGG
* * * *
1815447 G-CCATCTTGTGTCGATGGTGGACGAGGCAA-TCACCCACACCAAGG
1 GCCCAGCTTGTGCCGATGGTGGTCGAGGCAACT-GCCCACACCAAGG
** * * * *
1815492 GCTGA-CTTGTGCTGATGGTGATCGAGGTAACCGCCCACACC-AGG
1 GCCCAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAAGG
* * * *
1815536 GCCCAGCTTGTGCCGATGGCGGCCGAGGCAAGTGCCCATACCAA
1 GCCCAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAA
1815580 AGGGTAGCCT
Statistics
Matches: 100, Mismatches: 28, Indels: 10
0.72 0.20 0.07
Matches are distributed among these distances:
44 7 0.07
45 90 0.90
46 3 0.03
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (46 bp):
GCCCAGCTTGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAAGG
Found at i:1816540 original size:26 final size:26
Alignment explanation
Indices: 1816511--1816563 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1816501 GTTGACTTAG
1816511 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1816537 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1816563 G
1 G
1816564 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1820042 original size:26 final size:26
Alignment explanation
Indices: 1820012--1820064 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1820002 GTTGACTTAG
*
1820012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
* * *
1820038 GCATATGGAGTACATTTCTAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
1820064 G
1 G
1820065 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:1826047 original size:26 final size:26
Alignment explanation
Indices: 1825997--1826049 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1825987 GTTGACTTAG
* *
1825997 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCAAATCTAA
*
1826023 GCATATGGAGTTCATTCCAAATCTAA
1 GCATATGGAGTTCATCCCAAATCTAA
1826049 G
1 G
1826050 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCAAATCTAA
Found at i:1826206 original size:197 final size:195
Alignment explanation
Indices: 1825846--1826221 Score: 474
Period size: 197 Copynumber: 1.9 Consensus size: 195
1825836 GTGCACTCCC
* * *
1825846 AATCTAAGATTAGACCAGACCGAGGGTTACAGCAATAGGACCCATAGCGGGACCGACAGCATGCA
1 AATCTAAGATCAGACCAGACCGAGGGTTACAGCAATAGGACCCACAGCAGGACCGACAGCATGCA
* *
1825911 GAGGGGATCGGGTCGATCCCCGGCTTATGCATCCTGCCTCTCTGGCCGACTGAGCACCCTCATGC
66 GAAGGGATCGGGTCGATCCCCGGCTTATGCATCCTGCCTCTCTGGCCGACTGAG-ACCCTCACGC
* *
1825976 TCATTTCATTGGTTGACTTAGGCATATGGAGTTCATCCCCA-GTCTAAGCATATGGAGTTCATTC
130 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATATGGAGTTCATTC
1826040 CA
194 CA
* * * *
1826042 AATCTAAGATCAGACCGGACCGAGGGTTACAGTAGTAGGA-CCAGCAGCAGGATCGACAGCATGC
1 AATCTAAGATCAGACCAGACCGAGGGTTACAGCAATAGGACCCA-CAGCAGGACCGACAGCATGC
* * * * **
1826106 AGGAAGGGATCGGGTCGA-CCCTTGGCTTGTGCATTCTGCCTCT-TCGGTCGGTTGAG-CCCTCG
65 A-GAAGGGATCGGGTCGATCCC-CGGCTTATGCATCCTGCCTCTCT-GGCCGACTGAGACCCTC-
* *
1826168 AACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
126 -ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
1826222 CCCAGCCAAA
Statistics
Matches: 154, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
195 8 0.05
196 61 0.40
197 85 0.55
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (195 bp):
AATCTAAGATCAGACCAGACCGAGGGTTACAGCAATAGGACCCACAGCAGGACCGACAGCATGCA
GAAGGGATCGGGTCGATCCCCGGCTTATGCATCCTGCCTCTCTGGCCGACTGAGACCCTCACGCT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATATGGAGTTCATTCCA
Found at i:1827013 original size:26 final size:26
Alignment explanation
Indices: 1826983--1827035 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1826973 GTTGACTTAG
1826983 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGGAGTTCATCCCCTGTCTAA
*
1827009 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCTGTCTAA
1827035 G
1 G
1827036 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCTGTCTAA
Found at i:1827161 original size:196 final size:196
Alignment explanation
Indices: 1826828--1827204 Score: 443
Period size: 196 Copynumber: 1.9 Consensus size: 196
1826818 CGTAGTGTGC
** * * * *
1826828 TCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCTGTAGCATGACCAGCAGCAAGATTGGCAGCA
1 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCTGCAGCAGGACCAGCAGCAAGATCGACAGCA
* ** *
1826893 CGCAGAGGGGATCGGGTTGATCCCCGGCTTGCACAACCTGCCTCTCTGGCCGACTGAGCACCCGT
66 CGCAGAGGGGACCGGGCCGATCCCCGGCTTGCACAACCTGCCTCTCCGGCCGACTGAGCACCCGT
*
1826958 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATACGGAGTTCA
131 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCA
1827023 T
196 T
* * *
1827024 TCCCTGTCTAAGATCAGACCAGATCGAGGGTTGC-GACAGCAGGACTAGCAGCAGGATCGACAGC
1 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCTG-CAGCAGGACCAGCAGCAAGATCGACAGC
* * ** *** ** * *
1827088 ACGCAGCGGGGACCGGGCCGATCCCTGGCTTGTGCATTTTGCCTCTCCGATCG-GTCGAGCGCCC
65 ACGCAGAGGGGACCGGGCCGATCCCCGGCTTGCACAACCTGCCTCTCCGGCCGACT-GAGCACCC
* ** * * *
1827152 GTGCGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA
129 GTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAA
1827205 CCCCTAGTCA
Statistics
Matches: 148, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
195 2 0.01
196 146 0.99
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (196 bp):
TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCTGCAGCAGGACCAGCAGCAAGATCGACAGCA
CGCAGAGGGGACCGGGCCGATCCCCGGCTTGCACAACCTGCCTCTCCGGCCGACTGAGCACCCGT
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCA
T
Found at i:1827308 original size:986 final size:985
Alignment explanation
Indices: 1825387--1827355 Score: 2787
Period size: 986 Copynumber: 2.0 Consensus size: 985
1825377 CACGCCCCCT
1825387 TAAAGAGCATTTAAGATTTTAAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
1 TAAAGAGCATTTAAGATTTTAAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
*
1825452 TTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTATTTGTACGTGCC
66 TTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGATTTGTACGTGCC
* * *
1825517 AAAAAAATTACAAGTATCATGTCTACCAAATTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAA
131 AAAAAAATTACAAGGATCACGTCTACCAAATTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAA
* ** * * * *
1825582 AAATCTCGAATAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTTGTCTTGCCATGAA
196 AAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCATCAA
* *
1825647 ACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT
261 ACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACG
* *
1825712 GTGGAAATATGAAGATGTGCCTGAACCCACCTACCTCTCGATCGATCCACGGCTTGCGCATCCCG
326 GTAGAAATATGAAGATGTGCCTGAACCCACCTACCACTCGATCGATCCACGGCTTGCGCATCCCG
** * *
1825777 CCTCTCCGACCGGCTAAGTGCCTGCACGCTCGTTTCATGGGTTTACTTAGGCATACGTTGTGCAC
391 CCTCTCCGACCGGCTAAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTGCAC
* * * **
1825842 TCCCAATCTAAGATTAGACCAGACCGAGGGTTACAGCAATAGGACCCATAGCGGGACCGACAGCA
456 TCCCAATCTAAGATCAGACCAGACCGAGGGTTACAGCAACAGGACCCACAGCAAGACCGACAGCA
* ** *
1825907 TGCAGAGGGGATCGGGTCGATCCCCGGCTTATGCATCCTGCCTCTCTGGCCGACTGAGCACCCTC
521 CGCAGAGGGGATCGGGTCGATCCCCGGCTTACACAACCTGCCTCTCTGGCCGACTGAGCACCCTC
* * * *
1825972 ATGCTCATTTCATTGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
586 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
* * *
1826037 TTCCAAATCTAAGATCAGACCGGACCGAGGGTTACAGTAGTAGGACCAGCAGCAGGATCGACAGC
651 TTCCAAATCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAGC
* * * * * *
1826102 ATGCAGGAAGGGATCGGGTCGACCCTTGGCTTGTGCATTCTGCCTCTTCGGTCGGTTGAGCCCTC
716 ACGCAGG-AGGGACCGGGCCGACCCTTGGCTTGTGCATTCTGCCTCTCCGATCGGTCGAGCCCTC
1826167 GAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
780 GAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAA
** ** *
1826232 CCGAGGTTGTGGCAGCGGGACTGGTAGCACGTAGAGGGGGACCAGACAGATCCCCGGCTTACGCA
845 CCGAGGTTGTGGCAGCGGGACTGCCAGCACACAGAGGGGGACCAGACAGATCCCCGGCTTACACA
* * * * *
1826297 TTATGCCTCTCTAGCCTGTTCAGTGCCCGTACGCTCGTTTCATGGGTCGACTTAGGAATACGGAG
910 TTATGCCTCTCGAGCCGGCTCAGTGCCCGTACGCTCGTTTCATGGATCGACCTAGGAATACGGAG
1826362 TTCATTCCCAG
975 TTCATTCCCAG
*
1826373 TAAAGAGCATTTGAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
1 TAAAGAGCATTTAAGATTTTA-AGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
1826438 TTTTTTTCGAACGATCACAAAATCTTCTCCACTTTGAGTTTTTAGCTGAATTGGTTTGTGCGTGC
65 TTTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGATTTGTACGTGC
*
1826503 CAACAAAATTACAAGGATCACGTCTACCAAATTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAA
130 CAAAAAAATTACAAGGATCACGTCTACCAAATTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAA
*
1826568 AAAATC-CTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCA-C
195 AAAATCTC-GAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCATC
1826631 AAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCA-AAAAATTGCCATTGGC
259 AAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGCCATTGGC
*
1826695 ACGGTAGAAATATGAAGATGTGCCTGAACTCACCTACCACTCGATCGATCCACGGCTTGCGCATC
323 ACGGTAGAAATATGAAGATGTGCCTGAACCCACCTACCACTCGATCGATCCACGGCTTGCGCATC
* *
1826760 CCGCCTCTCCGACCGGCTTAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTG
388 CCGCCTCTCCGACCGGCTAAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTG
** * ** * * * * * * ** *
1826825 TGCTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCTGTAGCATGA-CCAGCAGCAAGATTGGC
453 CACTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAGCAACAGGACCCA-CAGCAAGACCGAC
* *
1826889 AGCACGCAGAGGGGATCGGGTTGATCCCCGGCTTGCACAACCTGCCTCTCTGGCCGACTGAGCAC
517 AGCACGCAGAGGGGATCGGGTCGATCCCCGGCTTACACAACCTGCCTCTCTGGCCGACTGAGCAC
* *
1826954 CCGT-ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATACGGA
582 CC-TCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGA
*** * * *
1827018 GTTCATTCCCTGTCTAAGATCAGACCAGATCGAGGGTTGC-GACAGCAGGACTAGCAGCAGGATC
646 GTTCATTCCAAATCTAAGATCAGACCAGACCGAGGGTTACAG-CAGCAGGACCAGCAGCAGGATC
*
1827082 GACAGCACGCAGCG-GGGACCGGGCCGATCCC-TGGCTTGTGCATTTTGCCTCTCCGATCGGTCG
710 GACAGCACGCAG-GAGGGACCGGGCCGA-CCCTTGGCTTGTGCATTCTGCCTCTCCGATCGGTCG
** * ** *
1827145 AGCGCC-CGTGCGCTCGTTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAA-CCC
773 AGC-CCTCGAACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC
* * * *
1827208 CTAGTCAGACCGAGGGTTGTGGTAGCGGGAGC-GACCA-CACACAGAGGGGGACCAGGTC-GATC
837 C-AGCCAAACCGA-GGTTGTGGCAGCGGGA-CTG-CCAGCACACAGAGGGGGACCA-GACAGATC
* * * *
1827270 CCCGGCTTGCACATTATGCCTCTCCGA-TCGGCTCAGTGCCCGTACGCTCGTTTCGTGGATTGAC
897 CCCGGCTTACACATTATGCCTCT-CGAGCCGGCTCAGTGCCCGTACGCTCGTTTCATGGATCGAC
*
1827334 CTAGGCATACGGAGTTCATTCC
961 CTAGGAATACGGAGTTCATTCC
1827356 TAGTCTAAGA
Statistics
Matches: 867, Mismatches: 101, Indels: 30
0.87 0.10 0.03
Matches are distributed among these distances:
984 4 0.00
985 108 0.12
986 530 0.61
987 225 0.26
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (985 bp):
TAAAGAGCATTTAAGATTTTAAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAT
TTTTTTCAAACGATCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTGATTTGTACGTGCC
AAAAAAATTACAAGGATCACGTCTACCAAATTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAA
AAATCTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGGGTCGTCTTGCCATCAA
ACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACG
GTAGAAATATGAAGATGTGCCTGAACCCACCTACCACTCGATCGATCCACGGCTTGCGCATCCCG
CCTCTCCGACCGGCTAAGTGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTGCAC
TCCCAATCTAAGATCAGACCAGACCGAGGGTTACAGCAACAGGACCCACAGCAAGACCGACAGCA
CGCAGAGGGGATCGGGTCGATCCCCGGCTTACACAACCTGCCTCTCTGGCCGACTGAGCACCCTC
ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
TTCCAAATCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAGGACCAGCAGCAGGATCGACAGC
ACGCAGGAGGGACCGGGCCGACCCTTGGCTTGTGCATTCTGCCTCTCCGATCGGTCGAGCCCTCG
AACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAAAC
CGAGGTTGTGGCAGCGGGACTGCCAGCACACAGAGGGGGACCAGACAGATCCCCGGCTTACACAT
TATGCCTCTCGAGCCGGCTCAGTGCCCGTACGCTCGTTTCATGGATCGACCTAGGAATACGGAGT
TCATTCCCAG
Found at i:1828166 original size:26 final size:26
Alignment explanation
Indices: 1828137--1828189 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1828127 GTTGACTTAG
1828137 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1828163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1828189 G
1 G
1828190 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1829645 original size:136 final size:136
Alignment explanation
Indices: 1829387--1829636 Score: 331
Period size: 136 Copynumber: 1.8 Consensus size: 136
1829377 GCGGGATCGA
* * * *
1829387 CAGCACACAGAAGGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGACTAGCTCAAC
1 CAGCACACAGAAGGGGACCGGGCCGATCCCCAACTTGCACATTATACCTCTCCGACCAGCTCAAC
* *
1829452 GCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGAT
66 GCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGAT
1829517 CGGCAG
131 CGGCAG
* * * * * * **
1829523 CAGCACGCAGAGGGGGACCGGGCCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCAGCTGAGT
1 CAGCACACAGAAGGGGACCGGGCCGATCCCCAACTTGCACATTATACCTCTCCGACCAGCTCAAC
* * *
1829588 GCCCGTAAGCTCGTTTCGTGGGTTGGCTTAGGCATA-TGAAGTTCATTCC
66 GCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCC
1829637 ATTCCTAAGC
Statistics
Matches: 96, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
135 1 0.01
136 95 0.99
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (136 bp):
CAGCACACAGAAGGGGACCGGGCCGATCCCCAACTTGCACATTATACCTCTCCGACCAGCTCAAC
GCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGAT
CGGCAG
Found at i:1829780 original size:295 final size:295
Alignment explanation
Indices: 1829250--1829804 Score: 737
Period size: 295 Copynumber: 1.9 Consensus size: 295
1829240 GGGGACTAGA
** * * * *
1829250 CCGATCCCTGACTTGCGCATTCTGCCTCTCTGGCCGACTGAGTGCCCACTCGCTAGTTTTGTGGG
1 CCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCGACTGAGTGCCCACTAGCTAGTTTCGTGGG
* * ** *
1829315 TTGGCTTAGGCATAGAAAGTTCATTCAATGTCTAAGCTCCAGTCGGACCGAGGGTTGTAGCAGCG
66 TTGGCTTAGGCATAGAAAGTTCATTCAATGTCTAAGCCCCAGCCAAACCGAGGGTTGTAGCAGCA
*
1829380 GGATCGACAGCACACAGAAGGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGACTA
131 GGATCGACAGCACACAGAAGGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGACCA
* * *
1829445 GCTCAACGCCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACAG-AGTTCATTCCCAATCTAA
196 GCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATA-AGAAGTTCATTCCCAATCTAA
1829509 GATCAGATCGGCAGCAGCACGCAGAGGGGGACCGGG
260 GATCAGATCGGCAGCAGCACGCAGAGGGGGACCGGG
* *
1829545 CCGATCCCCAACTTGCGCATTCTACCTCTCCGGCC-AGCTGAGTGCCC-GTAAGCTCGTTTCGTG
1 CCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCGA-CTGAGTGCCCACT-AGCTAGTTTCGTG
* *
1829608 GGTTGGCTTAGGCATATG-AAGTTCATTCCAT-TCCTAAGCCCCAGCCAAACCGAGGGTTGTGGC
64 GGTTGGCTTAGGCATA-GAAAGTTCATTCAATGT-CTAAGCCCCAGCCAAACCGAGGGTTGTAGC
* * * * *
1829671 AGCAGGA-CTGATAGCACGCAGAGGGGGATCGGG-CTGATCCCCAGCTTGCGCATTATGCCTCTC
127 AGCAGGATC-GACAGCACACAGAAGGGGATCGGGTC-GATCCCCAACTTGCACATTATGCCTCTC
* * * * *
1829734 CGACCGGCTCAATGCCCGCCCGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAG
190 CGACCAGCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAGAAGTTCATTCCCAA
1829799 TCTAAG
255 TCTAAG
1829805 CATACTGAGT
Statistics
Matches: 224, Mismatches: 29, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
294 6 0.03
295 217 0.97
296 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.24
Consensus pattern (295 bp):
CCGATCCCCAACTTGCGCATTCTACCTCTCCGGCCGACTGAGTGCCCACTAGCTAGTTTCGTGGG
TTGGCTTAGGCATAGAAAGTTCATTCAATGTCTAAGCCCCAGCCAAACCGAGGGTTGTAGCAGCA
GGATCGACAGCACACAGAAGGGGATCGGGTCGATCCCCAACTTGCACATTATGCCTCTCCGACCA
GCTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAAGAAGTTCATTCCCAATCTAAG
ATCAGATCGGCAGCAGCACGCAGAGGGGGACCGGG
Found at i:1829808 original size:26 final size:25
Alignment explanation
Indices: 1829778--1829856 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
1829768 GTTGACTTAG
1829778 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATG-AGTTCATTCCCAGTCTAA
1829804 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATA-TGAGTTCATTCCCAGTCTAA
*
1829830 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATA-TGAGTTCATTCCCAGTCTAA
1829856 G
1 G
1829857 ATCGGAGCAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
26 49 0.96
27 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATATGAGTTCATTCCCAGTCTAA
Found at i:1831829 original size:26 final size:26
Alignment explanation
Indices: 1831799--1831851 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1831789 GTTGACTTAG
* *
1831799 GCATAAAGAGTTCATTCCTAGTCTAA
1 GCATAAAGAGTTCATTCCCAGACTAA
**
1831825 GCATATGGAGTTCATTCCCAGACTAA
1 GCATAAAGAGTTCATTCCCAGACTAA
1831851 G
1 G
1831852 ATTAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGACTAA
Found at i:1832348 original size:45 final size:45
Alignment explanation
Indices: 1832294--1832450 Score: 179
Period size: 45 Copynumber: 3.5 Consensus size: 45
1832284 GGGCTCGACA
*
1832294 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* ** * * *
1832339 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAACGGTCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
* * * * *
1832384 TGTGCCGATGGTGATCGATGTAACCGCCTGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
** *
1832429 TGTGGTGATGGCGGTCGAGGCA
1 TGTGCCGATGGTGGTCGAGGCA
1832451 GGTGCCCGTA
Statistics
Matches: 88, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.17, C:0.29, G:0.36, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCAGCT
Found at i:1832479 original size:90 final size:90
Alignment explanation
Indices: 1832295--1832495 Score: 217
Period size: 90 Copynumber: 2.2 Consensus size: 90
1832285 GGCTCGACAT
* * * *
1832295 GTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGC
1 GTGCCGATGGTGGTCGATGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGC
* * *
1832360 AATCGCCCGCACCAACGGTCGGCAT
66 AATCGCCCGCACAAACGGTCAGCAC
* * * **
1832385 GTGCCGATGGTGATCGATGTAACCGCCTGCACCAGGGCCCAGCTTGTGGTGATGGCGGTCGAGGC
1 GTGCCGATGGTGGTCGATGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGC
* * * *
1832450 AGGT-GCCCGTAGCAAAGGGT-AGCCC
66 A-ATCGCCCGCA-CAAACGGTCAGCAC
*
1832475 GTGCCGATGATGGTCGATGCA
1 GTGCCGATGGTGGTCGATGCA
1832496 TGTGCCTTAA
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
90 83 0.92
91 7 0.08
ACGTcount: A:0.17, C:0.28, G:0.37, T:0.17
Consensus pattern (90 bp):
GTGCCGATGGTGGTCGATGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGC
AATCGCCCGCACAAACGGTCAGCAC
Found at i:1833305 original size:26 final size:26
Alignment explanation
Indices: 1833275--1833325 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1833265 TAACTTAGGT
1833275 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATCCCCAGTCTAAGC
* *
1833301 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATCCCCAGTCTAAG
1833326 AAGGGACTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATCCCCAGTCTAAGC
Found at i:1834259 original size:44 final size:43
Alignment explanation
Indices: 1834107--1834268 Score: 110
Period size: 45 Copynumber: 3.7 Consensus size: 43
1834097 TTTCAGGGGT
* * * *
1834107 CGACCGGGGCTCAGCATGTGCCAATGGTGGTCGAGGCAACAGCC
1 CGACCAGGGCCCAGCTTGTACCAATGGT-GTCGAGGCAACAGCC
* * * * * *
1834151 CGCACCATGACCCAG-TATGTGCCGATGGTGTTCGATGCAACCGCCC
1 CG-ACCAGGGCCCAGCT-TGTACCAATGGTG-TCGAGGCAACAG-CC
* * * * *
1834197 CCACCAGGGGCCATCTTGTATCAATGGTCGTCGAGGCAACTGCC
1 CGACCAGGGCCCAGCTTGTACCAATGGT-GTCGAGGCAACAGCC
* *
1834241 CGACCAGGGCCCAGCTTGTGCCGATGGT
1 CGACCAGGGCCCAGCTTGTACCAATGGT
1834269 AGTCAAGGAA
Statistics
Matches: 88, Mismatches: 24, Indels: 12
0.71 0.19 0.10
Matches are distributed among these distances:
44 27 0.31
45 56 0.64
46 5 0.06
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (43 bp):
CGACCAGGGCCCAGCTTGTACCAATGGTGTCGAGGCAACAGCC
Found at i:1835271 original size:170 final size:169
Alignment explanation
Indices: 1835012--1835371 Score: 454
Period size: 170 Copynumber: 2.1 Consensus size: 169
1835002 GCTAAGTGCT
* * *
1835012 CGCACGCTCGTTTTGTGGGTTGACTTTGGCATACGTAGTGCGCTCCCAGTCTAAGATCAAATCGG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCACTCCCAGTCTAAGATCAAATCGG
* * * * *
1835077 ACAGAGGGTTGTGGCAGCAGGACCCGTAGCGGGATTGACAGCACGCAGAGGGGACTAGGTCGA-T
66 ACAGAGGCTTGCGACAGCAGGACCCGTAGCGGGATCGACAGCACGCAGAGGGGACGA-GTCGATT
* * * *
1835141 CCCTGGCTTATGCATCCTACCTCTCTGGCCGGCTGGGCGTC
130 CCC-GGCTTACGCATCCTACCTCTCTGGCCAGCTGAGCGCC
**
1835182 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCACTCCCAGTCTAAGATCGGA-CTG
1 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCACTCCCAGTCTAAGATCAAATC-G
* * * *
1835246 GACCGAGGCTTGCGATAGTAGGACCCGTAGCGGGATCGATAGCACGCAGAGGGGACGAGTCGATT
65 GACAGAGGCTTGCGACAGCAGGACCCGTAGCGGGATCGACAGCACGCAGAGGGGACGAGTCGATT
* * * * *
1835311 CCCGGCTTACGCATCTTGCCTCTTTGGCCAGTTGAGTGCC
130 CCCGGCTTACGCATCCTACCTCTCTGGCCAGCTGAGCGCC
* *
1835351 CGCACGCACGTTTCATGGGTT
1 CGCACGCTCGTTTCGTGGGTT
1835372 ATGGCAGCAG
Statistics
Matches: 163, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
169 53 0.33
170 110 0.67
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (169 bp):
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCACTCCCAGTCTAAGATCAAATCGG
ACAGAGGCTTGCGACAGCAGGACCCGTAGCGGGATCGACAGCACGCAGAGGGGACGAGTCGATTC
CCGGCTTACGCATCCTACCTCTCTGGCCAGCTGAGCGCC
Found at i:1835468 original size:116 final size:115
Alignment explanation
Indices: 1835265--1835487 Score: 286
Period size: 116 Copynumber: 1.9 Consensus size: 115
1835255 TTGCGATAGT
* * * * *
1835265 AGGACCCGTAGCGGGATCGATAGCACGCAGAGGGGACGAGTCGATTCCCGGCTTACGCATCTTGC
1 AGGACCAGTAGCAGGATCGACAGCACGCAGAGGGGACGAGCCGATTCCCGACTTACGCATCTTGC
** * *
1835330 CTCTTTGGCCAGTTGAGTGCCCGCACGCACGTTTCATGGGTTATGGCAGC
66 CTCTCCGGCCAGCTGAGCGCCCGCACGCACGTTTCATGGGTTATGGCAGC
* * * *
1835380 AGGACCAGTAGCAGGATCGACAGCATGCAGGGGGGATCGGGCCGATTCCTGACTTACGCAT-TCT
1 AGGACCAGTAGCAGGATCGACAGCACGCAGAGGGGA-CGAGCCGATTCCCGACTTACGCATCT-T
* *
1835444 GCCTCTCCGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
64 GCCTCTCCGGCCAGCTGAGCGCCCGCACGCACGTTTCATGGGTT
1835488 GACTTATGCA
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
115 32 0.35
116 59 0.65
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.21
Consensus pattern (115 bp):
AGGACCAGTAGCAGGATCGACAGCACGCAGAGGGGACGAGCCGATTCCCGACTTACGCATCTTGC
CTCTCCGGCCAGCTGAGCGCCCGCACGCACGTTTCATGGGTTATGGCAGC
Found at i:1837319 original size:26 final size:26
Alignment explanation
Indices: 1837283--1837333 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1837273 TGACTTAGGT
*
1837283 ATACAGAGTTCATTCACAGTCTAAGC
1 ATACAAAGTTCATTCACAGTCTAAGC
*
1837309 ATACAAAGTTCATTCCCAGTCTAAG
1 ATACAAAGTTCATTCACAGTCTAAG
1837334 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.27
Consensus pattern (26 bp):
ATACAAAGTTCATTCACAGTCTAAGC
Found at i:1838951 original size:26 final size:26
Alignment explanation
Indices: 1838915--1838967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1838905 GTTGACTTAG
1838915 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1838941 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1838967 G
1 G
1838968 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1839301 original size:26 final size:26
Alignment explanation
Indices: 1839271--1839323 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1839261 GTTGACTTAG
1839271 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1839297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1839323 G
1 G
1839324 ATCAGACCGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1840901 original size:26 final size:26
Alignment explanation
Indices: 1840871--1840923 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1840861 GTTGACTTAG
1840871 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1840897 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1840923 G
1 G
1840924 AATTGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1841277 original size:26 final size:26
Alignment explanation
Indices: 1841226--1841278 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1841216 GTTGACTTAG
**
1841226 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
1841252 GCATATGGAGTTCATTCTCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1841278 G
1 G
1841279 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1842788 original size:45 final size:44
Alignment explanation
Indices: 1842650--1842796 Score: 145
Period size: 45 Copynumber: 3.3 Consensus size: 44
1842640 TGATGCAACC
* *
1842650 GCCCGCACCAAGGGCCATCTTGTGCCAATGGTGGTCGAGGCAAT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAAT
* * * *
1842694 CGCTCGCACCAAGGGCC-GACATGTGCCGATGGTGATC-AGGGTAACT
1 -GCCCGCACCAAGGGCCAG-CTTGTGCCGATGGTGGTCGA-GGCAA-T
* * *
1842740 GCCCACACCAAGGCCCAGCTTGTGCCGATGGCGGTCGAGGCAAGT
1 GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAA-T
*
1842785 GCCCGTACCAAG
1 GCCCGCACCAAG
1842797 AGGTAACCTG
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
44 1 0.01
45 77 0.95
46 3 0.04
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.16
Consensus pattern (44 bp):
GCCCGCACCAAGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAAT
Found at i:1842809 original size:90 final size:90
Alignment explanation
Indices: 1842650--1842814 Score: 208
Period size: 90 Copynumber: 1.8 Consensus size: 90
1842640 TGATGCAACC
* * * * * *
1842650 GCCCGCACCAAGGGCCATCTTGTGCCAATGGTGGTCGAGGCAATCGCTCGCACCAAGGGCCGACA
1 GCCCACACCAAGGCCCAGCTTGTGCCAATGGCGGTCGAGGCAATCGCCCGCACCAAGGGCCAACA
1842715 TGTGCCGATGGTGATCAGGGTAACT
66 TGTGCCGATGGTGATCAGGGTAACT
* * *
1842740 GCCCACACCAAGGCCCAGCTTGTGCCGATGGCGGTCGAGGCAAGT-GCCCGTACCAAGAGG-TAA
1 GCCCACACCAAGGCCCAGCTTGTGCCAATGGCGGTCGAGGCAA-TCGCCCGCACCAAG-GGCCAA
*
1842803 CCTGTGCCGATG
64 CATGTGCCGATG
1842815 ATGGTTGATG
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
90 60 0.95
91 3 0.05
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.16
Consensus pattern (90 bp):
GCCCACACCAAGGCCCAGCTTGTGCCAATGGCGGTCGAGGCAATCGCCCGCACCAAGGGCCAACA
TGTGCCGATGGTGATCAGGGTAACT
Found at i:1843755 original size:26 final size:26
Alignment explanation
Indices: 1843718--1843796 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
1843708 GTTGACTTAG
1843718 GCATAC-AGAGTTCATCCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
*
1843744 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1843770 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1843796 G
1 G
1843797 ATCGAATCAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 48 0.98
27 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1850508 original size:13 final size:13
Alignment explanation
Indices: 1850490--1850514 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1850480 ATGGTCGATG
1850490 CATGTGCCATCAC
1 CATGTGCCATCAC
1850503 CATGTGCCATCA
1 CATGTGCCATCA
1850515 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1851410 original size:26 final size:26
Alignment explanation
Indices: 1851380--1851432 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1851370 GTTGACTTAG
1851380 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
1851406 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1851432 G
1 G
1851433 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1851781 original size:26 final size:26
Alignment explanation
Indices: 1851734--1851786 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1851724 GTTGACTTAG
** *
1851734 GCATACAGAGTTCATTTGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
1851760 GCATACAGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
1851786 G
1 G
1851787 ATCAGATAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:1853705 original size:26 final size:26
Alignment explanation
Indices: 1853675--1853727 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1853665 GTTGACTTAG
1853675 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1853701 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1853727 G
1 G
1853728 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1854334 original size:90 final size:89
Alignment explanation
Indices: 1854170--1854385 Score: 238
Period size: 90 Copynumber: 2.4 Consensus size: 89
1854160 GGGCCCGACA
* * * * * * * *
1854170 TGTGCCAATGGTGGTCGAGGCAACCGCTCGCACCACGGCTCAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAA-CGCCCGCACCAAGGCTCAACAAGTGCCGATGGTGATCAAGG
* *
1854235 CAATCGCCCGTACCAGGGGCC-ATCT
65 CAATCGCCCGCACCA-GGGCCTAGCT
* * **
1854260 TGTGCCGATGGTGGTCGAAGCAATCGCCCGCACCAAGGTTCAACAAGTTTCGATGGTGATCAAGG
1 TGTGCCGATGGTGGTCGAGGCAA-CGCCCGCACCAAGGCTCAACAAGTGCCGATGGTGATCAAGG
1854325 CAA-CTGCCCGCACCAGGGCCTAGCT
65 CAATC-GCCCGCACCAGGGCCTAGCT
*
1854350 TGTGCCGATGGTGGTCGAGGCAACTGCCCGAACCAA
1 TGTGCCGATGGTGGTCGAGGCAAC-GCCCGCACCAA
1854386 AGGGCAGCCT
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
89 7 0.07
90 99 0.93
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (89 bp):
TGTGCCGATGGTGGTCGAGGCAACGCCCGCACCAAGGCTCAACAAGTGCCGATGGTGATCAAGGC
AATCGCCCGCACCAGGGCCTAGCT
Found at i:1854359 original size:45 final size:45
Alignment explanation
Indices: 1854168--1854384 Score: 190
Period size: 45 Copynumber: 4.8 Consensus size: 45
1854158 CGGGGCCCGA
* * * *
1854168 CATGTGCCAATGGTGGTCGAGGCAACCGCTCGCACCACGGCTCAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCTCAG
* * * *
1854213 CATGTGCCGATGGTGTTCGATGCAA-TCGCCCGTACCAGGGGC-CAT
1 CATGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACCA-GGGCTCAG
* * * * *
1854258 CTTGTGCCGATGGTGGTCGAAGCAA-TCGCCCGCACCAAGGTTCAA
1 CATGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACCAGGGCTCAG
* ** * *
1854303 CAAGTTTCGATGGTGATCAAGGCAACTGCCCGCACCAGGGC-CTAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCTC-AG
* *
1854348 CTTGTGCCGATGGTGGTCGAGGCAACTGCCCGAACCA
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCA
1854385 AAGGGCAGCC
Statistics
Matches: 135, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
44 3 0.02
45 128 0.95
46 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCTCAG
Found at i:1854444 original size:23 final size:23
Alignment explanation
Indices: 1854415--1854470 Score: 112
Period size: 23 Copynumber: 2.4 Consensus size: 23
1854405 ATCATCGATG
1854415 CATGTGCCATCACCATGCCCCAT
1 CATGTGCCATCACCATGCCCCAT
1854438 CATGTGCCATCACCATGCCCCAT
1 CATGTGCCATCACCATGCCCCAT
1854461 CATGTGCCAT
1 CATGTGCCAT
1854471 TGATGGCTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.41, G:0.14, T:0.23
Consensus pattern (23 bp):
CATGTGCCATCACCATGCCCCAT
Found at i:1855420 original size:12 final size:12
Alignment explanation
Indices: 1855403--1855434 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1855393 CCAAGGGTTG
1855403 TAGCAGCAGGAC
1 TAGCAGCAGGAC
*
1855415 TAGCAGTAGGAC
1 TAGCAGCAGGAC
1855427 TAGCAGCA
1 TAGCAGCA
1855435 CGTAAGAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.34, C:0.22, G:0.31, T:0.12
Consensus pattern (12 bp):
TAGCAGCAGGAC
Found at i:1855715 original size:26 final size:26
Alignment explanation
Indices: 1855685--1855737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1855675 GTTGACTTAG
*
1855685 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1855711 GCATACGGAGTTGATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1855737 G
1 G
1855738 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1856234 original size:26 final size:26
Alignment explanation
Indices: 1856198--1856248 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1856188 GTGGTCGAGG
1856198 CATACAGAGTTCA-TCCTCAGTCTAAA
1 CATACAGAGTTCATTCC-CAGTCTAAA
*
1856224 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
1856249 GATCGGATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:1857113 original size:45 final size:44
Alignment explanation
Indices: 1856933--1857134 Score: 154
Period size: 45 Copynumber: 4.5 Consensus size: 44
1856923 CGGCTCAGTA
* * ** *
1856933 TGTGTCGATGGTGGTGGAGGCAATCGCCCGCACCACGACCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCA-GGGCCAGCT
* * * * * * * *
1856978 TGTGCCAATGGTGTTTGATGCAACCGCCCGCACTAGGGGCATCT
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCAGCT
** * **
1857022 TGTGCCGATGGTGGTCGAGGCAATCGCCCTTACTAAGGGCTGGCT
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCAC-CAGGGCCAGCT
* *
1857067 TGTGCCGATGGTGATCGAGGCAA-CTGCCTGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAATC-GCCCGCACCAGGG-CCAGCT
* **
1857112 TGTGTCGATGGCAGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1857135 GTACCCGTAC
Statistics
Matches: 119, Mismatches: 35, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
44 35 0.29
45 84 0.71
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCAGCT
Found at i:1858094 original size:26 final size:26
Alignment explanation
Indices: 1858064--1858116 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1858054 GTTAACTTAG
*
1858064 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1858090 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1858116 G
1 G
1858117 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1859088 original size:45 final size:45
Alignment explanation
Indices: 1858897--1859141 Score: 170
Period size: 45 Copynumber: 5.4 Consensus size: 45
1858887 CAAGGCTCAA
* * * * *
1858897 CATGTGCCGATGGTGGTCGAGGTAATCGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGGCCAG
* * * * * * *
1858942 CATGTGCCGATGGTGTTCGATGCAACCGCCCATACCAAGTGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGGCCAG
* ** **** *
1858987 CTTGTATCGATGGTGGTCGAGGCAATCACTTGTACCAAGGGGCAG
1 CATGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGGCCAG
* * *
1859032 CATGGGTCGATGGTGATCGAGGCAATCACCCACACC-AGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGG-CCAG
* * * * ** *
1859077 CTTGTGCCGATGGCGGTCAAGGCAAGCACCCGTACCAAAGGG-CAA
1 CATGTGCCGATGGTGGTCGAGGCAATCACCCACACC-AAGGGCCAG
* *
1859122 CCTGTGCCGATGATGGTCGA
1 CATGTGCCGATGGTGGTCGA
1859142 TGCATGTGCC
Statistics
Matches: 151, Mismatches: 46, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
44 4 0.03
45 143 0.95
47 4 0.03
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.18
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGGCCAG
Found at i:1859133 original size:90 final size:90
Alignment explanation
Indices: 1858942--1859133 Score: 197
Period size: 90 Copynumber: 2.1 Consensus size: 90
1858932 CACGGCCCAG
* * * * * * * * *
1858942 CATGTGCCGATGGTGTTCGATGCAACCGCCCATACCAAGTGCCATCTTGTATCGATGGTGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGGCCAGCTTGTACCGATGGCGGTCAA
* ** * *
1859007 GGCAATCACTTGTACCAAGGGGCAG
66 GGCAAGCACCCGTACCAAAGGGCAA
* * * *
1859032 CATGGGTCGATGGTGATCGAGGCAATCACCCACACC-AGGGCCCAGCTTGTGCCGATGGCGGTCA
1 CATGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGG-CCAGCTTGTACCGATGGCGGTCA
1859096 AGGCAAGCACCCGTACCAAAGGGCAA
65 AGGCAAGCACCCGTACCAAAGGGCAA
*
1859122 CCTGTGCCGATG
1 CATGTGCCGATG
1859134 ATGGTCGATG
Statistics
Matches: 80, Mismatches: 21, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
89 3 0.04
90 77 0.96
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.19
Consensus pattern (90 bp):
CATGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGGCCAGCTTGTACCGATGGCGGTCAA
GGCAAGCACCCGTACCAAAGGGCAA
Found at i:1860083 original size:26 final size:26
Alignment explanation
Indices: 1860045--1860097 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1860035 GTTGAATTAG
* *
1860045 GCATACGGGGTTCAACCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
**
1860071 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAACCCCAGTCTAA
1860097 G
1 G
1860098 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAACCCCAGTCTAA
Found at i:1861978 original size:26 final size:26
Alignment explanation
Indices: 1861948--1861998 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1861938 GTTGACTTAG
1861948 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
1861974 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
1861999 TGATCGGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1862743 original size:45 final size:45
Alignment explanation
Indices: 1862694--1862846 Score: 132
Period size: 45 Copynumber: 3.4 Consensus size: 45
1862684 CAGCAGGTGT
*
1862694 CGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCTTGTGC
1 CGATGGTGTTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTGC
* * ** * * *
1862739 CGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCTGA-CATGTGC
1 CGATGGTGTTCGAGGCAACCGCCCACACCAGGGGC-CATCTTGTGC
** **
1862784 CGATGGTGATT-GAGGCAACCGTTCAC-CCTAGGACCCATCTTGTGC
1 CGATGGTG-TTCGAGGCAACCGCCCACACC-AGGGGCCATCTTGTGC
* *
1862829 CGATGGCGATCGAGGCAA
1 CGATGGTGTTCGAGGCAA
1862847 GTGCTTGTAC
Statistics
Matches: 82, Mismatches: 21, Indels: 10
0.73 0.19 0.09
Matches are distributed among these distances:
44 4 0.05
45 76 0.93
46 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
CGATGGTGTTCGAGGCAACCGCCCACACCAGGGGCCATCTTGTGC
Found at i:1862802 original size:90 final size:90
Alignment explanation
Indices: 1862644--1862846 Score: 214
Period size: 90 Copynumber: 2.3 Consensus size: 90
1862634 GGGCTCGACA
* * * * *
1862644 TGTGCCGATGGTGGTCAAGGTAATCGCCCGCACCATGACCCAGCAGGTGTCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAGGACCCAGCAGGTGCCGATGGTGTTCGAGG
**
1862709 CAACCGCCCACACC-AGGGGCCATCT
66 CAACCGCCCAC-CCTAGGACCCATCT
* * ** *
1862734 TGTGCCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCTGA-CATGTGCCGATGGTGATT-GA
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACC-AGGACCCAGCAGGTGCCGATGGTG-TTCGA
**
1862797 GGCAACCGTTCACCCTAGGACCCATCT
64 GGCAACCGCCCACCCTAGGACCCATCT
* *
1862824 TGTGCCGATGGCGATCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1862847 GTGCTTGTAC
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
89 2 0.02
90 86 0.91
91 6 0.06
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAGGACCCAGCAGGTGCCGATGGTGTTCGAGG
CAACCGCCCACCCTAGGACCCATCT
Found at i:1863827 original size:26 final size:26
Alignment explanation
Indices: 1863791--1863843 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1863781 GTTGACTTAG
1863791 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
1863817 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1863843 G
1 G
1863844 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1863969 original size:196 final size:196
Alignment explanation
Indices: 1863635--1864014 Score: 509
Period size: 196 Copynumber: 1.9 Consensus size: 196
1863625 ACGTAGTGTG
* * * * * * *
1863635 TTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGTGGCAGCAGGATCGACAGCGGGATCGACAGC
1 TTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGACCGACAGCAGGATCGAAAGC
* * * *
1863700 ACGCAGAGGTGATCGGGTCGATCCCCGGCTTGCGCATCTTGCCTCTCTGGCCGGTTGAGCGCCCG
66 ACGCAGAGGTGACCGGGCCGATCCCCGGCTTGCGCATCTTACCTCTCCGGCCGGTTGAGCGCCCG
* *
1863765 TACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCC-TAGTCTAAGCATACAGAGTT
131 CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCAT-GTCTAAGCATACAGAGTT
1863829 CA
195 CA
* * *
1863831 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGATAGTAGGACC-AGCAGCAGGATC-AAAG
1 TTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGACCGA-CAGCAGGATCGAAAG
*
1863894 CACGCAGGGAGG-GACCGGGCCGATCCCCGGCTTGTGCAT-TCTACCTCTCCGGCCGGTTGAGCG
65 CACGCA--GAGGTGACCGGGCCGATCCCCGGCTTGCGCATCT-TACCTCTCCGGCCGGTTGAGCG
* *
1863957 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGC
127 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGC
1864015 CCCAGCCAGA
Statistics
Matches: 160, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
195 11 0.07
196 144 0.90
197 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (196 bp):
TTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCAGGACCGACAGCAGGATCGAAAGC
ACGCAGAGGTGACCGGGCCGATCCCCGGCTTGCGCATCTTACCTCTCCGGCCGGTTGAGCGCCCG
CACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCATGTCTAAGCATACAGAGTTC
A
Found at i:1864182 original size:26 final size:26
Alignment explanation
Indices: 1864146--1864198 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1864136 GTTGACTTAG
1864146 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1864172 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1864198 G
1 G
1864199 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1864777 original size:45 final size:45
Alignment explanation
Indices: 1864651--1864796 Score: 148
Period size: 45 Copynumber: 3.2 Consensus size: 45
1864641 CGATGCTTGA
* *
1864651 CTTGTGCCGATAGTGGTCGAGGCAACCGCCCACACCATGGCCCAG
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAG
* * *** * * * * * *
1864696 CATGTGCCGATGGTGTTCGATAAAATCGCTCGCACCAGGGGCCAT
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAG
* * *
1864741 CTTGTGTCGATGGTGGTCGAGGCAACCACCCTCACCAAGGCCCAG
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAG
1864786 CTTGTGCCGAT
1 CTTGTGCCGAT
1864797 TGCGTTCAAG
Statistics
Matches: 75, Mismatches: 26, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (45 bp):
CTTGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAG
Found at i:1865789 original size:26 final size:26
Alignment explanation
Indices: 1865753--1865805 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1865743 GTTGACTTAG
1865753 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
* *
1865779 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
1865805 G
1 G
1865806 ATCCAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:1866143 original size:26 final size:26
Alignment explanation
Indices: 1866107--1866159 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1866097 GTTGACTTAG
* *
1866107 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1866133 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1866159 G
1 G
1866160 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1866736 original size:44 final size:46
Alignment explanation
Indices: 1866615--1866809 Score: 157
Period size: 45 Copynumber: 4.3 Consensus size: 46
1866605 GCTCGACATA
* *
1866615 TGCCGATGGTGGTCGAAGCAACCGCCTGCACC-ACGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAACGGCCCAGCATG
* * * *
1866660 TGCCGATGGTGGTCGAGGGAATCACTCGCACCAACGG-CCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAACGGCCCAGCATG
* * * * * *
1866705 TGCCCATGGT-GTCGAGGTAACCGCCCACACC-AGGGCCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAACGGCCCAGCATG
* * ** * * * * *
1866749 TGCTGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGG-GCAACTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAACGGCCCAGCATG
*
1866794 TGCCGATGATGGTCGA
1 TGCCGATGGTGGTCGA
1866810 TGCATGTGCC
Statistics
Matches: 117, Mismatches: 29, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
43 3 0.03
44 29 0.25
45 78 0.67
46 7 0.06
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (46 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAACGGCCCAGCATG
Found at i:1867722 original size:26 final size:26
Alignment explanation
Indices: 1867686--1867738 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1867676 GTTGACTTAG
* *
1867686 GCATACGGAGTTCATCCCCATTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1867712 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1867738 G
1 G
1867739 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1873895 original size:45 final size:45
Alignment explanation
Indices: 1873835--1873966 Score: 174
Period size: 45 Copynumber: 2.9 Consensus size: 45
1873825 TAGCTGACCG
* * * *
1873835 CCCGCACTAGGGGCCATCTTATGCCGATGGTGGTCGATGCAACCG
1 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCA
**
1873880 CTTGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCA
1 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCA
* * * *
1873925 CCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGCAA
1 CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAA
1873967 GTGCCCGTAC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (45 bp):
CCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCA
Found at i:1874938 original size:26 final size:26
Alignment explanation
Indices: 1874909--1874960 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1874899 GTTGACTTAG
1874909 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1874935 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1874961 CTTGGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1875294 original size:26 final size:26
Alignment explanation
Indices: 1875264--1875315 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1875254 TTGACTTAGC
*
1875264 CATACAGAGTTCATTCATAGTCTAAG
1 CATACAGAGTTCATTCACAGTCTAAG
* *
1875290 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCACAGTCTAAG
1875316 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCACAGTCTAAG
Done.