Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 17 of 120
Found at i:1875837 original size:45 final size:45
Alignment explanation
Indices: 1875754--1875839 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
1875744 CCGGGGCTCG
* * **
1875754 GCATGTGTCGATGGTGGTCGAGGCAACCGCCTGCACCACAACCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCACAACCCA
** *
1875799 GCATGTGCCAATGGTGGTCGAGGCAAGTGCCCATACCACAA
1 GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCACAA
1875840 GGCAACCTGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.16
Consensus pattern (45 bp):
GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCACAACCCA
Found at i:1876801 original size:26 final size:26
Alignment explanation
Indices: 1876764--1876816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1876754 GTTGACTTAG
1876764 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1876790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1876816 G
1 G
1876817 ATTAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1877473 original size:45 final size:45
Alignment explanation
Indices: 1877285--1877459 Score: 215
Period size: 45 Copynumber: 3.9 Consensus size: 45
1877275 TCGACAGTGG
*
1877285 TCGAGGCAACCGCCTGCACCACGACCCAGCATGTGCCGATGGTGT
1 TCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCCGATGGTGT
* *
1877330 TCGATGCAATCGCCTGCACCACGGCCCAGCATGTGCCGATGGTGT
1 TCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCCGATGGTGT
* * * * * * * *
1877375 TCGATGCAATCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGG
1 TCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCCGATGGTGT
* * * *
1877420 TCGAGGCAACCGTCAGCACCAGGGCCCAGCTTGTGCCGAT
1 TCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCCGAT
1877460 AGAGGTTGAG
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 115 1.00
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (45 bp):
TCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCCGATGGTGT
Found at i:1877888 original size:136 final size:135
Alignment explanation
Indices: 1877562--1877926 Score: 401
Period size: 135 Copynumber: 2.7 Consensus size: 135
1877552 TCGGATCGGG
* * * * * * *
1877562 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTTATCCCCATTCTAAGA
1 TGAGCACCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGA
* * * * * * *
1877626 TCGGACCGGCAGCAGGATGTAGAGGGGGACTAGACGGATCCTTGGCTTGCGCATCCTGCCTCTCT
65 TCGGACCGGCAGCAGCACGTAGAGGGGGACTAGACGGATCCTCGACTTACGCATCCTACCTCTCC
1877691 GTCGAC
130 GTCGAC
** * * * *
1877697 TGAGCGTCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAAGAT
1 TGAGCACCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * *
1877762 CGGACTGGTAGTAGCACGTAGAGGGGGAC-AGGGCGGATCCTCGACTTACGCATCCTACCTCTCC
66 CGGACCGGCAGCAGCACGTAGAGGGGGACTA-GACGGATCCTCGACTTACGCATCCTACCTCTCC
1877826 GATCGAC
130 G-TCGAC
** *
1877833 TGAGCACCCGCACACTTGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAAAT
1 TGAGCACCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * *
1877898 TGGACCGACAACAGTATGTAGAGGGGGAC
66 CGGACCGGCAGCAGCACGTAGAGGGGGAC
1877927 CGGGCCAATC
Statistics
Matches: 192, Mismatches: 35, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
134 1 0.01
135 109 0.57
136 82 0.43
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (135 bp):
TGAGCACCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
CGGACCGGCAGCAGCACGTAGAGGGGGACTAGACGGATCCTCGACTTACGCATCCTACCTCTCCG
TCGAC
Found at i:1878017 original size:136 final size:134
Alignment explanation
Indices: 1877562--1878018 Score: 495
Period size: 136 Copynumber: 3.4 Consensus size: 134
1877552 TCGGATCGGG
* * * *
1877562 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTTATCCCCATTCTAAGAT
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * *
1877627 CGGACCGGCAGCAGGATGTAGAGGGGGACTA-GACGGATCCTTGGCTTGCGCATCCTGCCTCTCT
66 CGGACCGGCAGCAGCATGTAGAGGGGGAC-AGGGCGGATCC-TCGCTTGCGCATCCTGCCTCTCT
1877691 GTCGAC
129 GTCGAC
* * *
1877697 TGAGCGTCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAAGAT
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * * *
1877762 CGGACTGGTAGTAGCACGTAGAGGGGGACAGGGCGGATCCTCGACTTACGCATCCTACCTCTCCG
66 CGGACCGGCAGCAGCATGTAGAGGGGGACAGGGCGGATCCTCG-CTTGCGCATCCTGCCTCTCTG
1877827 ATCGAC
130 -TCGAC
* * ** * * * *
1877833 TGAGCACCCGCACACTTGTTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAAAT
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * * ** *
1877898 TGGACCGACAACAGTATGTAGAGGGGGACCGGGCCAATCCTCAGCTTGTGCATCCTGCCTCTCT-
66 CGGACCGGCAGCAGCATGTAGAGGGGGACAGGGCGGATCCTC-GCTTGCGCATCCTGCCTCTCTG
1877962 TGCTGAC
130 T-C-GAC
* * * **
1877969 TGAGCCCCCGTACGCTCATTTCATGGGTTAACTTAGGCATTTGGAGTTCA
1 TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCA
1878019 ATCTTGGTCT
Statistics
Matches: 264, Mismatches: 52, Indels: 11
0.81 0.16 0.03
Matches are distributed among these distances:
134 4 0.02
135 109 0.41
136 150 0.57
137 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (134 bp):
TGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCGGCAGCAGCATGTAGAGGGGGACAGGGCGGATCCTCGCTTGCGCATCCTGCCTCTCTGT
CGAC
Found at i:1879045 original size:45 final size:45
Alignment explanation
Indices: 1878975--1879131 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 45
1878965 TGGGGCTCGA
*
1878975 CATGTGCCGATGGTGGTT-GAGGCAACCGCCCGCACCATGGCCCAG
1 CATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * *
1879020 CATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * * * * * *
1879065 CTTATGCCAATGGTGGTCGAGGCAACCGCTCGCACTAGGGCCTAG
1 CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * *
1879110 CTTGTGCCGATGGCGGTCGAGG
1 CATGTGCCGATGGTGTTCGAGG
1879132 TAAGTGCCCA
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 3 0.03
45 91 0.97
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (45 bp):
CATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGCCCAG
Found at i:1888249 original size:26 final size:26
Alignment explanation
Indices: 1888213--1888265 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1888203 GTTGACTTAG
*
1888213 GCATATGGAGTTCAT-CCCTAGTCTAA
1 GCATACGGAGTTCATACCC-AGTCTAA
1888239 GCATACGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
1888265 G
1 G
1888266 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:1888596 original size:26 final size:26
Alignment explanation
Indices: 1888567--1888619 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1888557 GTTGACTTAG
*
1888567 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1888593 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1888619 G
1 G
1888620 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1890147 original size:26 final size:26
Alignment explanation
Indices: 1890111--1890163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1890101 GTTGACTTAG
*
1890111 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1890137 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1890163 G
1 G
1890164 ATAGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1890490 original size:26 final size:26
Alignment explanation
Indices: 1890454--1890506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1890444 GTTCACTTAG
*
1890454 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1890480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1890506 G
1 G
1890507 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1892227 original size:26 final size:26
Alignment explanation
Indices: 1892190--1892242 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1892180 GTTGACTTAG
* *
1892190 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1892216 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1892242 G
1 G
1892243 ATCAAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1892733 original size:45 final size:45
Alignment explanation
Indices: 1892682--1892842 Score: 135
Period size: 45 Copynumber: 3.6 Consensus size: 45
1892672 CCGAGGCTCG
* * *
1892682 ACATGTGTCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * * * * *
1892727 GCATGTGCCAATGGT-TTTGAATGCAATCGCCCGCACCAGGGGCCA
1 ACATGTGCCGATGGTGGTCG-AGGCAACCGCCCGCACCAGGGCCCA
* * ** * **
1892772 TCTTGTGCCGATGGTGGTCGACACAACCGTCTACACCAGGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* *
1892817 ACTTGTGTCGATGGTGGTCGAGGCAA
1 ACATGTGCCGATGGTGGTCGAGGCAA
1892843 GTGCCCGTAC
Statistics
Matches: 88, Mismatches: 26, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
44 2 0.02
45 84 0.95
46 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
ACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
Found at i:1893566 original size:26 final size:26
Alignment explanation
Indices: 1893536--1893586 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1893526 CCCACTTAAG
1893536 CATACGGAGTTCAACCCCAGTCTAAA
1 CATACGGAGTTCAACCCCAGTCTAAA
**
1893562 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCAACCCCAGTCTAA
1893587 GATCGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (26 bp):
CATACGGAGTTCAACCCCAGTCTAAA
Found at i:1895521 original size:26 final size:26
Alignment explanation
Indices: 1895485--1895534 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1895475 GACTTAGGCA
1895485 TACGGAGTTCATCCCCAGTCTAAGCT
1 TACGGAGTTCATCCCCAGTCTAAGCT
*
1895511 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATCCCCAGTCTAAG
1895535 ATCAGACCTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATCCCCAGTCTAAGCT
Found at i:1895874 original size:26 final size:26
Alignment explanation
Indices: 1895837--1895889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1895827 GTTTACTTAG
*
1895837 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1895863 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1895889 G
1 G
1895890 ATCTGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1897529 original size:26 final size:26
Alignment explanation
Indices: 1897490--1897542 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1897480 GTTGACTTAG
1897490 GCATATGGAATTCATCCCCAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
* * *
1897516 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAATTCATCCCCAGTCTAA
1897542 G
1 G
1897543 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAATTCATCCCCAGTCTAA
Found at i:1904253 original size:45 final size:45
Alignment explanation
Indices: 1904205--1904376 Score: 168
Period size: 45 Copynumber: 3.8 Consensus size: 45
1904195 CGGGGCTCAG
* * * *
1904205 CATGTGCCGATAGTGGTCAAGGCAACTGCCCGCACC-ACGGCCCA
1 CATGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGGCCGA
* * * * * *
1904249 GCATGTGCCGATGGTGTTCAATGCAACCACCTGCACCAGGGGCCGT
1 -CATGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGGCCGA
* * *
1904295 C-TGGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGA
1 CAT-GTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGGCCGA
* * *
1904340 CATGTGCCAATGGTGATCAAGGCAACCGCCTGCACCA
1 CATGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCA
1904377 GAGCCTAGCT
Statistics
Matches: 99, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
44 1 0.01
45 93 0.94
46 5 0.05
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.16
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCAAGGGCCGA
Found at i:1904372 original size:90 final size:90
Alignment explanation
Indices: 1904212--1904377 Score: 228
Period size: 90 Copynumber: 1.8 Consensus size: 90
1904202 CAGCATGTGC
* * *
1904212 CGATAGTGGTCAAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCAATGCAACC
1 CGATAGTGGTCAAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCAATGGTGATCAAGGCAACC
1904277 ACCTGCACCAGGGGCCGTCTGGTGT
66 ACCTGCACCAGGGGCCGTCTGGTGT
* * * *
1904302 CGATGGTGGTCGAGGCAA-TCGCCCGCACCAAGGGCC-GACATGTGCCAATGGTGATCAAGGCAA
1 CGATAGTGGTCAAGGCAACT-GCCCGCACCACGGCCCAG-CATGTGCCAATGGTGATCAAGGCAA
*
1904365 CCGCCTGCACCAG
64 CCACCTGCACCAG
1904378 AGCCTAGCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
89 2 0.03
90 64 0.97
ACGTcount: A:0.22, C:0.32, G:0.31, T:0.16
Consensus pattern (90 bp):
CGATAGTGGTCAAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCAATGGTGATCAAGGCAACC
ACCTGCACCAGGGGCCGTCTGGTGT
Found at i:1904396 original size:90 final size:90
Alignment explanation
Indices: 1904211--1904414 Score: 209
Period size: 90 Copynumber: 2.3 Consensus size: 90
1904201 TCAGCATGTG
* * * * *
1904211 CCGATAGTGGTCAAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCAATGCAAC
1 CCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCAATGGTGATCAAGGCAAC
* *
1904276 CACCTGCACCAGGGGCCGTCTGGTG
66 CACCTGCACCAGGAGCCGTCTGGTA
* * *
1904301 TCGATGGTGGTCGAGGCAA-TCGCCCGCACCAAGGGCC-GACATGTGCCAATGGTGATCAAGGCA
1 CCGATGGTGGTCGAGGCAACT-GCCCGCACCACGGCCCAG-CATGTGCCAATGGTGATCAAGGCA
* *
1904364 ACCGCCTGCACCA-GAGCC-TAGCTTGTA
64 ACCACCTGCACCAGGAGCCGT--CTGGTA
* * *
1904391 CCGATGGCGGTTGAGGCAAGTGCC
1 CCGATGGTGGTCGAGGCAACTGCC
1904415 TGTACCAAAG
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
88 1 0.01
89 6 0.06
90 86 0.91
91 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCAATGGTGATCAAGGCAAC
CACCTGCACCAGGAGCCGTCTGGTA
Found at i:1905741 original size:159 final size:160
Alignment explanation
Indices: 1905448--1905858 Score: 531
Period size: 159 Copynumber: 2.6 Consensus size: 160
1905438 GGTAGTATGC
* * * * * * * **
1905448 AGGGGGGATCGAGCCAATCCCC-AGCTTGTGCATTCTGCCTCTCCAG-CTAGCTGAGTGCCCGCA
1 AGGGGGGACCGAGTCAATCCCCGA-CTTGCGCATTATGCCTCTCCGGTC-GGCTCAGCACCCGCA
* * *
1905511 CGCTCATTTCATGGGTTGGCTTAGGCTTACGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTG
64 CGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCG
* * * *
1905576 AGGGTTGTGGCAGTGGGATCGATAGCACGCAG
129 ACGGTTGTGGCAGCGGGACCGACAGCACGCAG
* * * *
1905608 A-GGGGGATCGAGTCAATCCCTGACTTGCGCATTATGCCTCTTCGGTCGGCTGAGCACCCGCACG
1 AGGGGGGACCGAGTCAATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACG
1905672 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAC
66 CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAC
*
1905737 GGTTGTGGCAGCGGGACCGGCAGCACGCAG
131 GGTTGTGGCAGCGGGACCGACAGCACGCAG
* * * * *
1905767 AGGGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGGTTGGCTCAGCGCCCGCACA
1 AGGGGGGACCGAGTCAATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACG
* *
1905832 CTCATTTCGTGGGTTGACTTAGGCATA
66 CTCATTTCATGGGTTGGCTTAGGCATA
1905859 TGGCTGGCTC
Statistics
Matches: 220, Mismatches: 28, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
159 138 0.63
160 82 0.37
ACGTcount: A:0.18, C:0.29, G:0.30, T:0.23
Consensus pattern (160 bp):
AGGGGGGACCGAGTCAATCCCCGACTTGCGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACG
CTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAC
GGTTGTGGCAGCGGGACCGACAGCACGCAG
Found at i:1905885 original size:49 final size:49
Alignment explanation
Indices: 1905814--1905910 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
1905804 CCTCTCCGGT
*
1905814 TGGCTCAGCGCCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGC
1 TGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGC
* *
1905863 TGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGG
1 TGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGG
1905911 AGTTCATTCC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.16, C:0.27, G:0.29, T:0.28
Consensus pattern (49 bp):
TGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATATGGC
Found at i:1909476 original size:27 final size:27
Alignment explanation
Indices: 1909438--1909489 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
1909428 GTTGGATTAG
1909438 GTAAAAAATTTTAAAAAATCCTGAACT
1 GTAAAAAATTTTAAAAAATCCTGAACT
* * *
1909465 GTAAAAAGTTTTTAAAAATCGTGAA
1 GTAAAAAATTTTAAAAAATCCTGAA
1909490 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.31
Consensus pattern (27 bp):
GTAAAAAATTTTAAAAAATCCTGAACT
Found at i:1909905 original size:26 final size:26
Alignment explanation
Indices: 1909869--1909921 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1909859 GTTGATTTAG
1909869 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1909895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1909921 G
1 G
1909922 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1910464 original size:45 final size:44
Alignment explanation
Indices: 1910391--1910548 Score: 136
Period size: 45 Copynumber: 3.5 Consensus size: 44
1910381 CAAACCTACA
* * * * *
1910391 TGTGCTGATGGTGCTCGATGCAACCGCCCCCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAA-CGCCCACACCAGGGGCCAGCT
* * * ** *
1910436 TGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCTGGCA
1 TGTGCCGATGGTGGTCGAGGCAA-CGCCCACACCAGGGGCCAGCT
* * *
1910481 TGTGCCGATGGTGATCGAGGCAACTACCCACACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAAC-GCCCACACCAGGGGCCAGCT
* * *
1910526 TGTGCCGGTGGCGGTCAAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1910549 GTGCCCGTAC
Statistics
Matches: 88, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
44 1 0.01
45 87 0.99
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACGCCCACACCAGGGGCCAGCT
Found at i:1910547 original size:90 final size:90
Alignment explanation
Indices: 1910389--1910561 Score: 213
Period size: 90 Copynumber: 1.9 Consensus size: 90
1910379 AGCAAACCTA
* * * * * * * * * *
1910389 CATGTGCTGATGGTGCTCGATGCAACCGCCCCCACCAGGGGCCATCTTGTGTCGATGGTGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCAA
1910454 GGCAA-TCGCCCGCACCAAGGGCTGG
66 GGCAAGT-GCCCGCACCAAGGGCTGG
* *
1910479 CATGTGCCGATGGTGATCGAGGCAACTACCCACACCAGGGCCCAGCTTGTGCCGGTGGCGGTCAA
1 CATGTGCCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCAA
*
1910544 GGCAAGTGCCCGTACCAA
66 GGCAAGTGCCCGCACCAA
1910562 AGGGTAGCCT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
90 68 0.99
91 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (90 bp):
CATGTGCCGATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCAA
GGCAAGTGCCCGCACCAAGGGCTGG
Found at i:1910580 original size:90 final size:90
Alignment explanation
Indices: 1910397--1910580 Score: 192
Period size: 90 Copynumber: 2.0 Consensus size: 90
1910387 TACATGTGCT
* * * * * * * * *
1910397 GATGGTGCTCGATGCAACCGCCCCCACCAGGGGCCATCTTGTGTCGATGGTGGTCGAGGCAATCG
1 GATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCAAGGCAATCG
* *
1910462 CCCGCACCAAGGGCTGGCATGTGCC
66 CCCGCACCAAGGGCTAGCATGCGCC
* *
1910487 GATGGTGATCGAGGCAACTACCCACACCAGGGCCCAGCTTGTGCCGGTGGCGGTCAAGGCAAGT-
1 GATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCAAGGCAA-TC
* * *
1910551 GCCCGTACCAAAGGG-TAGCCTGCGTC
65 GCCCGCACC-AAGGGCTAGCATGCGCC
1910577 GATG
1 GATG
1910581 ATGGTCGATG
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
90 70 0.92
91 6 0.08
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (90 bp):
GATGGTGATCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCAAGGCAATCG
CCCGCACCAAGGGCTAGCATGCGCC
Found at i:1911415 original size:26 final size:26
Alignment explanation
Indices: 1911378--1911430 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1911368 GTTGACTTAG
1911378 GCATACGAAGTTC-TTCCCCAGTCTAA
1 GCATACGAAGTTCATT-CCCAGTCTAA
*
1911404 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1911430 G
1 G
1911431 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1912428 original size:45 final size:45
Alignment explanation
Indices: 1912275--1912429 Score: 134
Period size: 45 Copynumber: 3.4 Consensus size: 45
1912265 CTGGCACCAT
* * **
1912275 GGCCCAGCATGTGTCGATGGTGTTCGATGCAATCGCCCACAACAG
1 GGCCCAGCATGTGTCGATGGTGATCGAGGCAATCGCCTGCAACAG
* * * * *
1912320 GGGCCATCTTGTG-CTGATGGTGGTCGAGGCAATCGCCTGCACCAAG
1 GGCCCAGCATGTGTC-GATGGTGATCGAGGCAATCGCCTGCAAC-AG
** * * * *
1912366 GG-CCAGCATGTACCGATGGTGATAGAGGCAACCGCCTGTATCAG
1 GGCCCAGCATGTGTCGATGGTGATCGAGGCAATCGCCTGCAACAG
*
1912410 GGCCCAGCTTGTGTCGATGG
1 GGCCCAGCATGTGTCGATGG
1912430 CAGTCGAGGC
Statistics
Matches: 87, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
44 5 0.06
45 77 0.89
46 5 0.06
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.21
Consensus pattern (45 bp):
GGCCCAGCATGTGTCGATGGTGATCGAGGCAATCGCCTGCAACAG
Found at i:1913436 original size:26 final size:26
Alignment explanation
Indices: 1913385--1913437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1913375 TGGGTTGACT
*
1913385 TAAGCATACGGAGTTCAGCCCCAGTC
1 TAAGCATACGGAGTTCAGCCCAAGTC
**
1913411 TAAGCATACGGAGTTCATTCCAAGTC
1 TAAGCATACGGAGTTCAGCCCAAGTC
1913437 T
1 T
1913438 GAGATCAGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCAGCCCAAGTC
Found at i:1913774 original size:26 final size:26
Alignment explanation
Indices: 1913744--1913796 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1913734 GTTGACTTAG
1913744 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGAAGTTCATTCCCAGTCTAA
*
1913770 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATAAGAAGTTCATTCCCAGTCTAA
1913796 G
1 G
1913797 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATAAGAAGTTCATTCCCAGTCTAA
Found at i:1913947 original size:26 final size:26
Alignment explanation
Indices: 1913918--1913970 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1913908 GTTGACTTAG
1913918 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
1913944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1913970 G
1 G
1913971 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1914433 original size:45 final size:44
Alignment explanation
Indices: 1914363--1914522 Score: 151
Period size: 45 Copynumber: 3.6 Consensus size: 44
1914353 CGGGGCTCGA
* * * * *
1914363 CATGTGTCGATGGTGGTAGAGGCAACTGCCTGCACCACGGCCCAG
1 CATGTGCCGATGATGGTCGAGGCAACCGCCAGCACCA-GGCCCAG
* * * *
1914408 CATGTGCCGATGGTGGTCGATGCAACCGCCAGCACCAGAGGCCAT
1 CATGTGCCGATGATGGTCGAGGCAACCGCCAGCACCAG-GCCCAG
* * * *
1914453 CTTGGGCCTAAGATGGTCGAGGCAACCGCCCA-CACCAGGGCCCAG
1 CATGTGCCGATGATGGTCGAGGCAACCG-CCAGCACCA-GGCCCAG
*
1914498 CTTGTGCCGATGATGGTCGAGGCAA
1 CATGTGCCGATGATGGTCGAGGCAA
1914523 GTGCCCGTAC
Statistics
Matches: 94, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
44 1 0.01
45 89 0.95
46 4 0.04
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (44 bp):
CATGTGCCGATGATGGTCGAGGCAACCGCCAGCACCAGGCCCAG
Found at i:1914558 original size:90 final size:90
Alignment explanation
Indices: 1914365--1914562 Score: 207
Period size: 90 Copynumber: 2.2 Consensus size: 90
1914355 GGGCTCGACA
* * * ** * *
1914365 TGTGTCGATGGTGGTAGAGGCAACTGCCTGCACCACGGCCCAGCATGTGCCGATGGTGGTCGATG
1 TGTGCCGATGATGGTAGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCGATGATGGTCGAGG
* * *
1914430 CAACCGCCAGCACCAGAGGCCATCT
66 CAACCGCCAGCACCAAAGGCCAACC
* * * * * *
1914455 TGGGCCTAAGATGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGCCGATGATGGTCGAGG
1 TGTGCCGATGATGGTAGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCGATGATGGTCGAGG
** * * *
1914520 CAAGTGCCCGTACCAAAGGGCAACC
66 CAACCGCCAGCACCAAAGGCCAACC
1914545 TGTGCCGATGATGGTAGA
1 TGTGCCGATGATGGTAGA
1914563 TGCATGTGCC
Statistics
Matches: 83, Mismatches: 25, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.22, C:0.29, G:0.33, T:0.17
Consensus pattern (90 bp):
TGTGCCGATGATGGTAGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCGATGATGGTCGAGG
CAACCGCCAGCACCAAAGGCCAACC
Found at i:1915425 original size:170 final size:170
Alignment explanation
Indices: 1915130--1915443 Score: 373
Period size: 170 Copynumber: 1.8 Consensus size: 170
1915120 GAGGGGATCG
* * *
1915130 GGTCGATCCCCGGATTGCGCATCCTGCCTCTCTGGCCGGCTAAGCGCCCGCACTCTCATTTCGTG
1 GGTCGATCCCCGGATTGCGCATCCTACCTCTCTGGCCGACTAAGCGCCCGCACGCTCATTTCGTG
* * ** *
1915195 GGTTGACTTATGCAAACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGATAA
66 GGTTGACTTAGGCAAACGGAGTTCATTTCCAGTCTAAGACCAGACCAAACCGAAGGTTGTGATAA
1915260 CAGGACCAGCAGCAGGATCAAAAGCACGTAGGGGGGACCA
131 CAGGACCAGCAGCAGGATCAAAAGCACGTAGGGGGGACCA
* * * * * *
1915300 GGTCGATCCCCGGCTTGTGCATTCTACCTCT-TCGGCCGACTGAGTGCCCGTACGCTCATTTCGT
1 GGTCGATCCCCGGATTGCGCATCCTACCTCTCT-GGCCGACTAAGCGCCCGCACGCTCATTTCGT
* * * * * *
1915364 GGGTTGGCTTAGGCATACGGAGTTCA-TTCCATGTCTAAGCCCCAG-TCAAATCGAAGGTTGTGG
65 GGGTTGACTTAGGCAAACGGAGTTCATTTCCA-GTCTAAG-ACCAGACCAAACCGAAGGTTGTGA
* * *
1915427 TAGCGGGACCGGCAGCA
128 TAACAGGACCAGCAGCA
1915444 CGTAGAGGGG
Statistics
Matches: 118, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
169 6 0.05
170 109 0.92
171 3 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (170 bp):
GGTCGATCCCCGGATTGCGCATCCTACCTCTCTGGCCGACTAAGCGCCCGCACGCTCATTTCGTG
GGTTGACTTAGGCAAACGGAGTTCATTTCCAGTCTAAGACCAGACCAAACCGAAGGTTGTGATAA
CAGGACCAGCAGCAGGATCAAAAGCACGTAGGGGGGACCA
Found at i:1915733 original size:26 final size:26
Alignment explanation
Indices: 1915697--1915749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1915687 GTTGACTTAG
1915697 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1915723 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1915749 G
1 G
1915750 ATGGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1916614 original size:45 final size:45
Alignment explanation
Indices: 1916539--1916634 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 45
1916529 TCGACATGTG
**
1916539 CCGATGGTGGTCGAGGCAATCGCCTGCACCACGGCCCAGCCTGTA
1 CCGATGGTGGTCGAGGCAATCGCCCACACCACGGCCCAGCCTGTA
* * * * * *
1916584 CCGATGGTGTTCGATGCAA-CAGCCCACACCAGGGCCTAGCTTGTG
1 CCGATGGTGGTCGAGGCAATC-GCCCACACCACGGCCCAGCCTGTA
1916629 CCGATG
1 CCGATG
1916635 ACGGTAGAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 1 0.02
45 41 0.98
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAATCGCCCACACCACGGCCCAGCCTGTA
Found at i:1916895 original size:26 final size:26
Alignment explanation
Indices: 1916859--1916908 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1916849 GGCTTAGGCT
1916859 TACAGAGTTCATTCCCAGTCTAAGCA
1 TACAGAGTTCATTCCCAGTCTAAGCA
*
1916885 TACAGAGTTCATTCCTAGTCTAAG
1 TACAGAGTTCATTCCCAGTCTAAG
1916909 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (26 bp):
TACAGAGTTCATTCCCAGTCTAAGCA
Found at i:1917443 original size:45 final size:44
Alignment explanation
Indices: 1917408--1917546 Score: 181
Period size: 45 Copynumber: 3.1 Consensus size: 44
1917398 GGCGTTCAAT
*
1917408 GCAACCGCCCACACCAAGGGCCATCTTGTGCCGATGGTGGTCGAG
1 GCAACCGCCCACACCAAGGGCCA-CTTGTGCCGATGGTGATCGAG
* ** *
1917453 GCAATCGCCTGCACCAAGGGCCGACATGTGCCGATGGTGATCGAG
1 GCAACCGCCCACACCAAGGGCC-ACTTGTGCCGATGGTGATCGAG
*
1917498 GCAACCGCCCACACC-AGGGCCCAGCTTGTGCCGATGGTGGTCGAG
1 GCAACCGCCCACACCAAGGG-CCA-CTTGTGCCGATGGTGATCGAG
1917543 GCAA
1 GCAA
1917547 GTGCCCGTAC
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
44 5 0.06
45 75 0.93
46 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.32, T:0.14
Consensus pattern (44 bp):
GCAACCGCCCACACCAAGGGCCACTTGTGCCGATGGTGATCGAG
Found at i:1917446 original size:90 final size:89
Alignment explanation
Indices: 1917344--1917546 Score: 241
Period size: 90 Copynumber: 2.3 Consensus size: 89
1917334 GGGCTCGGCA
* * *
1917344 TGTGCCGATGGTGGTCGAGGCAACCGCTTGCACCGTAA-CCC-AGCATGCATCGATGGCGTTCAA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACC--AAGCCCGA-CATGCACCGATGGCGATCAA
* *
1917407 TGCAACCGCCCACACCAAGGG-CCATCT
63 GGCAACCGCCCACACC-AGGGCCCAGCT
* * ** * *
1917434 TGTGCCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCCGACATGTGCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAA-GCCCGACATGCACCGATGGCGATCAAGG
1917499 CAACCGCCCACACCAGGGCCCAGCT
65 CAACCGCCCACACCAGGGCCCAGCT
1917524 TGTGCCGATGGTGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1917547 GTGCCCGTAC
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
88 2 0.02
89 4 0.04
90 91 0.93
91 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.17
Consensus pattern (89 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAAGCCCGACATGCACCGATGGCGATCAAGGC
AACCGCCCACACCAGGGCCCAGCT
Found at i:1918517 original size:26 final size:26
Alignment explanation
Indices: 1918488--1918566 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
1918478 GTTGACTTAG
*
1918488 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1918514 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1918540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1918566 G
1 G
1918567 ATCGGACTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1919189 original size:45 final size:45
Alignment explanation
Indices: 1919140--1919255 Score: 110
Period size: 45 Copynumber: 2.6 Consensus size: 45
1919130 CCAATCACCT
*
1919140 GCACCAAGGGCCAGCATGTGCCGATGGTGATCGAGGAAACTGCCC
1 GCACCAAGGGCCAGCATGTGCCGATGGCGATCGAGGAAACTGCCC
* * * * *
1919185 GCACC-AGGGCCCAGCTTGTGCTGATGGCGGTCGAGGCAAGTGCCC
1 GCACCAAGGG-CCAGCATGTGCCGATGGCGATCGAGGAAACTGCCC
** * *
1919230 ATACCAAGAGG-TAGCCTGTGCCGATG
1 GCACCAAG-GGCCAGCATGTGCCGATG
1919256 ATGGTCGATG
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
44 4 0.07
45 49 0.86
46 2 0.04
47 2 0.04
ACGTcount: A:0.22, C:0.28, G:0.34, T:0.16
Consensus pattern (45 bp):
GCACCAAGGGCCAGCATGTGCCGATGGCGATCGAGGAAACTGCCC
Found at i:1920385 original size:21 final size:21
Alignment explanation
Indices: 1920359--1920409 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
1920349 CTAAGGCCCA
*
1920359 GTAGAGGGGGACCGGTAGCAC
1 GTAGAGGGGGACCGATAGCAC
** *
1920380 GTAGAGAAGGACCGATAGCAT
1 GTAGAGGGGGACCGATAGCAC
*
1920401 GCAGAGGGG
1 GTAGAGGGG
1920410 ACCAATCCTC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.45, T:0.10
Consensus pattern (21 bp):
GTAGAGGGGGACCGATAGCAC
Found at i:1920835 original size:26 final size:26
Alignment explanation
Indices: 1920805--1920857 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1920795 GTTGACTTAG
1920805 GCATACGAAGTTCA-TCCCTAGTCTAA
1 GCATACGAAGTTCATTCCC-AGTCTAA
**
1920831 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1920857 G
1 G
1920858 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1921032 original size:26 final size:26
Alignment explanation
Indices: 1921001--1921053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1920991 GTTGGCTTAG
**
1921001 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1921027 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1921053 G
1 G
1921054 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1921665 original size:45 final size:45
Alignment explanation
Indices: 1921535--1921670 Score: 121
Period size: 45 Copynumber: 3.0 Consensus size: 45
1921525 ACACCGCGAC
* * * * * *
1921535 CCAGCATGTGCCGATGGTGTTCGATGTAACCACCCACACCAGGGG
1 CCAGCATGTGTCGATGATGATCGAGGCAACCACCCACACCAAGGG
* * * * * * *
1921580 CCATCTTGTGTCGATGATGGTCAAGGCAATCGCTCACACCAAGGG
1 CCAGCATGTGTCGATGATGATCGAGGCAACCACCCACACCAAGGG
* * *
1921625 CTAGCATGTGTCGATGCTGATCGAGGCAACCACCCGCACC-AGGG
1 CCAGCATGTGTCGATGATGATCGAGGCAACCACCCACACCAAGGG
1921669 CC
1 CC
1921671 TAGTTTGTGC
Statistics
Matches: 68, Mismatches: 23, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
44 5 0.07
45 63 0.93
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (45 bp):
CCAGCATGTGTCGATGATGATCGAGGCAACCACCCACACCAAGGG
Found at i:1922775 original size:144 final size:144
Alignment explanation
Indices: 1922515--1922788 Score: 361
Period size: 144 Copynumber: 1.9 Consensus size: 144
1922505 TGGTAGTAGC
* * * * ** *
1922515 GGGATCGATAGCACACAGACGGGATCGGGTGGATCCCTGGCTTGTGCATCGTGCCTCTCTGGACG
1 GGGATCGACAGCACACAGACGGGACCGAGTCGATCCCTGGCTTACGCATCCTGCCTCTCTGGACG
*
1922580 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
66 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
1922645 ATCGGACCAGCAGT
131 ATCGGACCAGCAGT
* * * *
1922659 GGGATCGACAGCACGCAGAGGGGACCGAGTCGATCCCTGGCTTACGCATCCTGCCTCTTTGGCCG
1 GGGATCGACAGCACACAGACGGGACCGAGTCGATCCCTGGCTTACGCATCCTGCCTCTCTGGACG
* * * * * * *
1922724 ATTGGGCGCCCGTACGCTCGTTTTGTGGG-TCGACTTAGGCATAGGGAGTTCATCCCTAGTCTAA
66 ACTGAGCGCCCGCACGCTCATTTCGTGGGTTC-ACTTAGGCATACGGAGTTCATCCCCAGTCTAA
1922788 G
130 G
1922789 CATACGGAGT
Statistics
Matches: 110, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
143 2 0.02
144 108 0.98
ACGTcount: A:0.18, C:0.28, G:0.31, T:0.23
Consensus pattern (144 bp):
GGGATCGACAGCACACAGACGGGACCGAGTCGATCCCTGGCTTACGCATCCTGCCTCTCTGGACG
ACTGAGCGCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATCCCCAGTCTAAG
ATCGGACCAGCAGT
Found at i:1922798 original size:26 final size:26
Alignment explanation
Indices: 1922762--1922814 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1922752 GTCGACTTAG
*
1922762 GCATAGGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
1922788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1922814 G
1 G
1922815 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1923695 original size:26 final size:26
Alignment explanation
Indices: 1923665--1923717 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1923655 GTTGACTTAG
1923665 GCATACAGAGTTCA-TCTCCAGTCTAA
1 GCATACAGAGTTCATTC-CCAGTCTAA
*
1923691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1923717 G
1 G
1923718 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1923844 original size:196 final size:196
Alignment explanation
Indices: 1923495--1923919 Score: 534
Period size: 196 Copynumber: 2.2 Consensus size: 196
1923485 GTTGACTTAG
* * * * * *
1923495 GCATACGTAGTGCACTCCCAGTCTAAGATCGAATCAGACTGAGGGTTGCGGCAACAAGACCCGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGACAACAAGACCAGCA
* * * * *
1923560 GCAGGATCGATAGCACGTAGAGGAGACCGGGTCGATCCTCGGCTTGCCCATCCTACATCTCTGGC
66 GCAGGATCGACAGCACGTAGAGGAGACCGAGCCAATCCTCGGCTTGCACATCCTACATCTCTGGC
* * *
1923625 CGACTGAGCGCCTGCATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCA-TCTCCAGTCT
131 CGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC-CCAGTCT
1923689 AA
195 AA
* * * * *
1923691 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGA-TCGAGGGTTGTGATAGCAAGACCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACT-GAGGGTTGCGACAACAAGACCAGC
* * * * * *
1923755 AGTAGGATCGACAGCACGTA-AGGGGGACCGAGCCAATCCTTGGCTTGCACATTCTGCCTCT-TC
65 AGCAGGATCGACAGCACGTAGA-GGAGACCGAGCCAATCCTCGGCTTGCACATCCTACATCTCT-
* *
1923818 GGCCTACTCAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
128 GGCCGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
1923883 CTAA
193 CTAA
*
1923887 GCATACGGAGTTCATTCCCAGTCCAAGATCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1923920 CTGATAGCAG
Statistics
Matches: 197, Mismatches: 28, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
195 3 0.02
196 192 0.97
197 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (196 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGACAACAAGACCAGCA
GCAGGATCGACAGCACGTAGAGGAGACCGAGCCAATCCTCGGCTTGCACATCCTACATCTCTGGC
CGACTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
A
Found at i:1924422 original size:45 final size:45
Alignment explanation
Indices: 1924386--1924490 Score: 149
Period size: 45 Copynumber: 2.3 Consensus size: 45
1924376 CATGGTCTAG
* *
1924386 CATGTGCCTATGGTGTCTGATGCAACCACCCGCACCACGGCCTAA
1 CATGTGCCGATGGTGTCCGATGCAACCACCCGCACCACGGCCTAA
* *
1924431 CATGTGCCGATGGTGTCCGATGCAACCACCCGCACCAGGGGCC-AT
1 CATGTGCCGATGGTGTCCGATGCAACCACCCGCACCA-CGGCCTAA
*
1924476 CTTGTGCCGATGGTG
1 CATGTGCCGATGGTG
1924491 GTTCAGGTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 50 0.93
46 4 0.07
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (45 bp):
CATGTGCCGATGGTGTCCGATGCAACCACCCGCACCACGGCCTAA
Found at i:1925516 original size:26 final size:26
Alignment explanation
Indices: 1925487--1925539 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1925477 GTTGACTTAG
*
1925487 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* *
1925513 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
1925539 G
1 G
1925540 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:1927460 original size:26 final size:26
Alignment explanation
Indices: 1927424--1927476 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1927414 GTTGACTTAG
1927424 GCATACAGAGTTCATCCCCAGCCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
* * *
1927450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGCCTAA
1927476 G
1 G
1927477 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGCCTAA
Found at i:1927808 original size:26 final size:26
Alignment explanation
Indices: 1927779--1927831 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1927769 GTTGACTTAG
1927779 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1927805 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1927831 G
1 G
1927832 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1928417 original size:45 final size:44
Alignment explanation
Indices: 1928368--1928514 Score: 120
Period size: 45 Copynumber: 3.3 Consensus size: 44
1928358 CTATCTTGTA
1928368 CCGATGGTGGTCGAGGCAATCGCTCGTACCAAGGGCCAGCATGTG
1 CCGATGGTGGTCGAGGCAATCGC-CGTACCAAGGGCCAGCATGTG
* * * * * *
1928413 CCGATGGTGATCGAGGTAACCGCCTGCACC-AGAGCGCAGCTTGTG
1 CCGATGGTGGTCGAGGCAATCGCC-GTACCAAGGGC-CAGCATGTG
* * * *
1928458 CCGATGGCGGTTGAGGCAAGT-GCCCATACCAAAGGG-CAGCCTGTG
1 CCGATGGTGGTCGAGGCAA-TCG-CCGTACC-AAGGGCCAGCATGTG
*
1928503 CCGATGATGGTC
1 CCGATGGTGGTC
1928515 AATACATGTG
Statistics
Matches: 78, Mismatches: 18, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
44 5 0.06
45 68 0.87
46 2 0.03
47 3 0.04
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (44 bp):
CCGATGGTGGTCGAGGCAATCGCCGTACCAAGGGCCAGCATGTG
Found at i:1928456 original size:90 final size:91
Alignment explanation
Indices: 1928298--1928508 Score: 218
Period size: 90 Copynumber: 2.3 Consensus size: 91
1928288 CCAAAGTAAC
* ** * * *
1928298 CGCTCGTACCATGACCCAGCATGTGCCGATGGTGTTCGATGCAACCACCCACGCTAGAGGCTATC
1 CGCTCGTACCAAGGGCCAGCATGTGCCGATGGTGATCGAGGCAACCACCCACGCTAGAGGCTAGC
*
1928363 TTGTACCGATGGTGGTCGAGGCAA-T
66 TTGTACCGATGGCGGTCGAGGCAAGT
* *
1928388 CGCTCGTACCAAGGGCCAGCATGTGCCGATGGTGATCGAGGTAACCGCCTGCAC-C-AGAGCGC-
1 CGCTCGTACCAAGGGCCAGCATGTGCCGATGGTGATCGAGGCAACCACC--CACGCTAGAG-GCT
* *
1928450 AGCTTGTGCCGATGGCGGTTGAGGCAAGT
63 AGCTTGTACCGATGGCGGTCGAGGCAAGT
* * *
1928479 -GCCCATACCAAAGGG-CAGCCTGTGCCGATG
1 CGCTCGTACC-AAGGGCCAGCATGTGCCGATG
1928509 ATGGTCAATA
Statistics
Matches: 102, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
90 90 0.88
91 9 0.09
92 3 0.03
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (91 bp):
CGCTCGTACCAAGGGCCAGCATGTGCCGATGGTGATCGAGGCAACCACCCACGCTAGAGGCTAGC
TTGTACCGATGGCGGTCGAGGCAAGT
Found at i:1929447 original size:26 final size:26
Alignment explanation
Indices: 1929417--1929469 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1929407 GTTGACTTAG
*
1929417 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
* *
1929443 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATCCCCAGTCTAA
1929469 G
1 G
1929470 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATCCCCAGTCTAA
Found at i:1930214 original size:45 final size:46
Alignment explanation
Indices: 1930066--1930284 Score: 162
Period size: 45 Copynumber: 4.8 Consensus size: 46
1930056 TCGGGGCTCG
* * * * *
1930066 GCATGTGCCAATGGTGGTCAAGGCAATCGTCCGCACC-ACGGCCTA
1 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCTA
* * * * * * *
1930111 GCATGTGCTGATGGTGTTCGATGCAACCACCCATACCAGGGGCC-A
1 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCTA
* * * **
1930156 TCTTTTGATGATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCC-A
1 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCTA
* * *
1930201 GCATGTGCCGATGGTGATCGAGGCAACCG-CC-TACACCAGGGCCTA
1 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCGTAC-CAAGGGCCTA
* * * *
1930246 GCTTGTGCCAATGGCGGTTGAGGCAAGT-GCCCGTACCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA-TCGCCCGTACCAA
1930285 AAGGTAGCCT
Statistics
Matches: 131, Mismatches: 37, Indels: 11
0.73 0.21 0.06
Matches are distributed among these distances:
43 3 0.02
44 9 0.07
45 108 0.82
46 8 0.06
47 3 0.02
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (46 bp):
GCATGTGCCGATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCTA
Found at i:1930269 original size:90 final size:91
Alignment explanation
Indices: 1930069--1930284 Score: 233
Period size: 90 Copynumber: 2.4 Consensus size: 91
1930059 GGGCTCGGCA
* * * * * *
1930069 TGTGCCAATGGTGGTCAAGGCAATCGTCCGCACC-ACGGCCTAGCATGTGCTGATGGTGTTCGAT
1 TGTGCCAATGGTGGTCGAGGCAATCGCCCGTACCAACGGCCTAGCATGTGCCGATGGTGATCGAG
* *
1930133 GCAACCACCCATACCAGGGGCCATCT
66 GCAACCACCCACACCAGGGGCCAGCT
* *** *
1930159 TTTGATGATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCC-AGCATGTGCCGATGGTGATCGAG
1 TGTGCCAATGGTGGTCGAGGCAATCGCCCGTACCAACGGCCTAGCATGTGCCGATGGTGATCGAG
* *
1930223 GCAACCGCCTACACCA-GGGCCTAGCT
66 GCAACCACCCACACCAGGGGCC-AGCT
* *
1930249 TGTGCCAATGGCGGTTGAGGCAAGT-GCCCGTACCAA
1 TGTGCCAATGGTGGTCGAGGCAA-TCGCCCGTACCAA
1930285 AAGGTAGCCT
Statistics
Matches: 102, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
89 5 0.05
90 91 0.89
91 6 0.06
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (91 bp):
TGTGCCAATGGTGGTCGAGGCAATCGCCCGTACCAACGGCCTAGCATGTGCCGATGGTGATCGAG
GCAACCACCCACACCAGGGGCCAGCT
Found at i:1937079 original size:26 final size:26
Alignment explanation
Indices: 1937050--1937102 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1937040 GTTGACTTAG
*
1937050 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1937076 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1937102 G
1 G
1937103 ATCAAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1937770 original size:45 final size:45
Alignment explanation
Indices: 1937706--1937826 Score: 165
Period size: 45 Copynumber: 2.7 Consensus size: 45
1937696 CGAGGCTCGA
*
1937706 CATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACA-GCACAG
1 CATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGC-CAG
* *
1937751 CATGTG-CTGATGGTGGTCGAGGCAATCGCCCGCACCAAAGGCCGG
1 CATGTGTC-GATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAG
* *
1937796 CATGTGTCGATGGTGATCGAGGCAACTGCCC
1 CATGTGTCGATGGTGGTCGAGGCAACCGCCC
1937827 CTACCAGGGC
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
44 1 0.01
45 63 0.94
46 3 0.04
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.17
Consensus pattern (45 bp):
CATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGGCCAG
Found at i:1937852 original size:45 final size:45
Alignment explanation
Indices: 1937706--1937852 Score: 149
Period size: 45 Copynumber: 3.3 Consensus size: 45
1937696 CGAGGCTCGA
* * *
1937706 CATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACA-GCACAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCA-AGGCCCAG
* *
1937751 CATGTGCTGATGGTGGTCGAGGCAA-TCGCCCGCACCAAAGG-CCGG
1 CATGTGCCGATGGTGGTCGAGGCAACT-GCCCGCACC-AAGGCCCAG
* * *
1937796 CATGTGTCGATGGTGATCGAGGCAACTGCCC-CTACCAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACTGCCCGC-ACCAAGGCCCAG
*
1937841 CTTGTGCCGATG
1 CATGTGCCGATG
1937853 ACGGTCGCGA
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
44 4 0.05
45 77 0.92
46 3 0.04
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCAG
Found at i:1937878 original size:90 final size:90
Alignment explanation
Indices: 1937706--1937881 Score: 203
Period size: 90 Copynumber: 2.0 Consensus size: 90
1937696 CGAGGCTCGA
* * **
1937706 CATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACAGCACAGCATGTGCTGATGGTGGTCGA
1 CATGTGTCGATGGTGATCGAGGCAACCGCCCGCACCACAGCACAGCATGTGCCGATGACGGTCGA
* *
1937771 GGCAATCGCCCGCACCAAAGGCCGG
66 GACAATCGCCCACACCAAAGGCCGG
* ** * *
1937796 CATGTGTCGATGGTGATCGAGGCAACTGCCC-CTACCAGGGCCCAGCTTGTGCCGATGACGGTCG
1 CATGTGTCGATGGTGATCGAGGCAACCGCCCGC-ACCACAGCACAGCATGTGCCGATGACGGTCG
* *
1937860 CGACAAGT-GCCCATACCAAAGG
65 AGACAA-TCGCCCACACCAAAGG
1937882 GCAGTTTGAG
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
89 1 0.01
90 69 0.97
91 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.32, T:0.16
Consensus pattern (90 bp):
CATGTGTCGATGGTGATCGAGGCAACCGCCCGCACCACAGCACAGCATGTGCCGATGACGGTCGA
GACAATCGCCCACACCAAAGGCCGG
Found at i:1938638 original size:169 final size:169
Alignment explanation
Indices: 1938341--1938728 Score: 442
Period size: 169 Copynumber: 2.3 Consensus size: 169
1938331 GTGCCTGCAA
* * * *
1938341 GCTCATTTCGTGGGTTGACTTAGGCATACGTAGTGCACTCCCAGTCTAAGATCAGATCAGACTGA
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTCA
* * * * * *
1938406 GGGTTACGATGTAGGACCCGCAACGGGATCGACAGCACGCAGAGATGATCAGGTTGATCCCCAGG
66 GGGTTACGATGCAGGACCAGCAACAGGATCGACAGCACGCAGAGAGGATCAGGTCGATCCCCAGC
* * * *
1938471 TTACGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGTAC
131 TTACGCATCCTGCCTCTCCGACCGGCTGAGCACCCGCAC
* * *
1938510 GCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCC
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACT-C
* ** * * * *
1938574 AGGGTTGC-AGTAGCAGGACCAGCAGTAGGATCGACAGCACGTAG-GGGGATCGGGTCGGTCCCC
65 AGGGTTACGA-T-GCAGGACCAGCAACAGGATCGACAGCACGCAGAGAGGATCAGGTCGATCCCC
* * **
1938637 AGCTTGCGCATTCTGCCTCTCCGATTGGCTGAGCACCCGCAC
128 AGCTTACGCATCCTGCCTCTCCGACCGGCTGAGCACCCGCAC
* *
1938679 GCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAG
1 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAG
1938729 CCCCAGCCAG
Statistics
Matches: 183, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
168 5 0.03
169 152 0.83
170 26 0.14
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.24
Consensus pattern (169 bp):
GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTCA
GGGTTACGATGCAGGACCAGCAACAGGATCGACAGCACGCAGAGAGGATCAGGTCGATCCCCAGC
TTACGCATCCTGCCTCTCCGACCGGCTGAGCACCCGCAC
Found at i:1938749 original size:169 final size:157
Alignment explanation
Indices: 1938431--1938883 Score: 424
Period size: 169 Copynumber: 2.8 Consensus size: 157
1938421 ACCCGCAACG
* * * * * * * *
1938431 GGATCGACAGCACGCAGAGATGATCAGGTTGATCCCCAGGTTACGCATCCTGCCTCTCTGGCCGG
1 GGATCGACAGCACGAAG-GAGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCGG
* * *
1938496 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGA
65 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGA
* * *
1938561 TCAGATCGGATCCAGGGTTGCAGTAGCAGGACCAGCAGTA
129 CCAGACCAGATCCAGGGTT---GT----GG--CAGC-G-A
* * * * **
1938601 GGATCGACAGCACGTAGGGGGATCGGGTCGGTCCCCAGCTTGCGCATTCTGCCTCTCCGATTGGC
1 GGATCGACAGCACGAAGGAGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCGGC
* * * *
1938666 TGAGCACCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
66 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCA-GTCTAAG-A
*
1938731 CCAG-CCAGATCGAGGGTTGTGGCAGCGA
129 CCAGACCAGATCCAGGGTTGTGGCAGCGA
* * * * * *
1938759 -GACCGACAGCACGAAAAGGCGGATCGGGCCTATCCCCAGCTTGCGCATTATGCCTTTCTGACCG
1 GGATCGACAGCACG--AAGGAGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCG
* * *
1938823 ACTGAGCGCCCACACGCTCGTTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
64 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCC-AGTC
1938884 CAAGCATATG
Statistics
Matches: 237, Mismatches: 41, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
157 12 0.05
158 1 0.00
159 93 0.39
160 5 0.02
162 2 0.01
166 2 0.01
168 3 0.01
169 100 0.42
170 19 0.08
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (157 bp):
GGATCGACAGCACGAAGGAGGATCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCTGACCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGACC
AGACCAGATCCAGGGTTGTGGCAGCGA
Found at i:1939600 original size:45 final size:45
Alignment explanation
Indices: 1939496--1939698 Score: 172
Period size: 45 Copynumber: 4.5 Consensus size: 45
1939486 TTGGGGCTCG
* ** * * * *
1939496 GCATGTGCCGATGATGGTCGAGGCAACCGTCTGCACCACGGCGCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCA
* * *
1939541 GCATGTGACGATGGTGGTCGAGGCAACCATCCGTACCATGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCA
* ** * * * * *
1939586 GCATGTGCCAATGGTATTCAATGTAACCGCCCGTACCAAGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCA
* * * *
1939631 TCTTGTGTCGATGGTGGTCGAGGCAACCACCCGTACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCA
** * *
1939676 GGTTATGCCGATGGCGGTCGAGG
1 GCATGTGCCGATGGTGGTCGAGG
1939699 TAAGTGCCCG
Statistics
Matches: 123, Mismatches: 35, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 123 1.00
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCACCCGTACCAAGGCCCA
Found at i:1939708 original size:90 final size:91
Alignment explanation
Indices: 1939544--1939719 Score: 219
Period size: 90 Copynumber: 1.9 Consensus size: 91
1939534 CGGCGCAGCA
* * * * * *
1939544 TGTGACGATGGTGGTCGAGGCAACCATCCGTACCATGGCCCAGCATGTGCCAATGGTATTCAATG
1 TGTGACGATGGTGGTCGAGGCAACCACCCGTACCAGGGCCCAGCATATGCCAATGGCAGTCAAGG
1939609 TAACCGCCCGTACC-AAGGGCCATCT
66 TAACCGCCCGTACCAAAGGGCCATCT
* ** * * *
1939634 TGTGTCGATGGTGGTCGAGGCAACCACCCGTACCAGGGCCCAGGTTATGCCGATGGCGGTCGAGG
1 TGTGACGATGGTGGTCGAGGCAACCACCCGTACCAGGGCCCAGCATATGCCAATGGCAGTCAAGG
**
1939699 TAAGTGCCCGTACCAAAGGGC
66 TAACCGCCCGTACCAAAGGGC
1939720 AGCCTCTGCT
Statistics
Matches: 71, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
90 65 0.92
91 6 0.08
ACGTcount: A:0.22, C:0.28, G:0.31, T:0.19
Consensus pattern (91 bp):
TGTGACGATGGTGGTCGAGGCAACCACCCGTACCAGGGCCCAGCATATGCCAATGGCAGTCAAGG
TAACCGCCCGTACCAAAGGGCCATCT
Found at i:1940903 original size:26 final size:26
Alignment explanation
Indices: 1940804--1940907 Score: 129
Period size: 26 Copynumber: 4.0 Consensus size: 26
1940794 TGACTTAGGC
* *
1940804 ATACGGAGTTCATTCCCAGTCAAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
*
1940830 ATA-TAGAGTTCATTCCCAGTCTAAGA
1 ATACGA-AGTTCATTCCCAGTCTAAGA
* *
1940856 ATACGAAGTTCATCCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGA
* *
1940882 ATACGAAGTTCATTCTCGGTCTAAGA
1 ATACGAAGTTCATTCCCAGTCTAAGA
1940908 TCGAACTGGA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 65 0.98
27 1 0.02
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGA
Found at i:1941337 original size:45 final size:45
Alignment explanation
Indices: 1941287--1941406 Score: 150
Period size: 45 Copynumber: 2.7 Consensus size: 45
1941277 GAGGCAATAA
* * * * * *
1941287 CCCGCACCACGACCCAGCATGTGTCGATGGTGTTCGATGCAACCG
1 CCCGCACCAGGGCCCAGCTTGTGCCGATGGTGATCGAGGCAACCG
* * *
1941332 CCCGCACCAGGGGCCATCTTGTGCCAATGGTGATCGAGGCAACCG
1 CCCGCACCAGGGCCCAGCTTGTGCCGATGGTGATCGAGGCAACCG
*
1941377 CCCGTACCAGGGCCCAGCTTGTGCCGATGG
1 CCCGCACCAGGGCCCAGCTTGTGCCGATGG
1941407 CGGTTGAGGC
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.18, C:0.35, G:0.30, T:0.17
Consensus pattern (45 bp):
CCCGCACCAGGGCCCAGCTTGTGCCGATGGTGATCGAGGCAACCG
Found at i:1942346 original size:26 final size:26
Alignment explanation
Indices: 1942310--1942362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1942300 GTTGACTTAG
1942310 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1942336 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1942362 G
1 G
1942363 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1943070 original size:45 final size:45
Alignment explanation
Indices: 1942892--1943089 Score: 175
Period size: 45 Copynumber: 4.4 Consensus size: 45
1942882 CGACATATGT
* ** * * *
1942892 TGATGATGGTCGAGGCAACCGCCGGCACCACGGCCCAACCTGTG-
1 TGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGC
* * ** * *
1942936 TCGATGATGGTCAAGGCAACCGCCCACACCAAAGCCTAGCATGTGC
1 T-GATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGC
* * * * *
1942982 CGATGGTGTTCGATGCAACCGCCCGCACCAAGGG-CCATCTTGTGC
1 TGATGGTGGTCGAGGCAACCGCCCACACC-AGGGCCCAGCTTGTGC
* *
1943027 TGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGTTTGTGC
1 TGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGC
* *
1943072 TGATGGCGGTCAAGGCAA
1 TGATGGTGGTCGAGGCAA
1943090 GTGCCCATAC
Statistics
Matches: 122, Mismatches: 28, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
44 5 0.04
45 115 0.94
46 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (45 bp):
TGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGTGC
Found at i:1943077 original size:90 final size:90
Alignment explanation
Indices: 1942892--1943089 Score: 209
Period size: 90 Copynumber: 2.2 Consensus size: 90
1942882 CGACATATGT
* * *
1942892 TGATGATGGTCGAGGCAACCGCCGGCACCACGGCCCAACCTGTGTCGATGATGGTCAAGGCAACC
1 TGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACCTGTGTCGATGATGGTCAAGGCAACC
* *
1942957 GCCCACACCAAAGCCTAGCATGTGC
66 ACCCACACCAAAGCCCAGCATGTGC
* * * * * * * *
1942982 CGATGGTGTTCGATGCAACCGCCCGCACCAAGGGCCATCTTGTG-CTGATGGTGGTCGAGGCAAC
1 TGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACCTGTGTC-GATGATGGTCAAGGCAAC
** **
1943046 CACCCACACCAGGGCCCAGTTTGTGC
65 CACCCACACCAAAGCCCAGCATGTGC
* *
1943072 TGATGGCGGTCAAGGCAA
1 TGATGGTGGTCGAGGCAA
1943090 GTGCCCATAC
Statistics
Matches: 85, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
89 1 0.01
90 84 0.99
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (90 bp):
TGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACCTGTGTCGATGATGGTCAAGGCAACC
ACCCACACCAAAGCCCAGCATGTGC
Found at i:1943150 original size:13 final size:13
Alignment explanation
Indices: 1943132--1943156 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1943122 ATGGTCGATG
1943132 CATGTGCCATCAC
1 CATGTGCCATCAC
1943145 CATGTGCCATCA
1 CATGTGCCATCA
1943157 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1944084 original size:26 final size:26
Alignment explanation
Indices: 1944032--1944084 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1944022 GTTGACTTAG
*
1944032 GCATAAGGAGTTCATCCCCAGTGTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
* * *
1944058 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATCCCCAGTCTAA
1944084 G
1 G
1944085 ATCAGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATCCCCAGTCTAA
Found at i:1944811 original size:45 final size:45
Alignment explanation
Indices: 1944722--1944892 Score: 137
Period size: 45 Copynumber: 3.8 Consensus size: 45
1944712 GGGGCTCAGA
* * * * * **
1944722 ATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGACCCATC
1 ATGTGGCGATGGTGGTCGAGGTAACTGCCCGTACCAGGGGCCATC
* * * *
1944767 ATGTGGCGATGGTGTTCGATGTAATTGCCCGTACTAGGGGCCATC
1 ATGTGGCGATGGTGGTCGAGGTAACTGCCCGTACCAGGGGCCATC
* * * * *
1944812 TTGTGTCGATGGTGGTCGAGGTAACTGCTCGTACCAGGGCCCAGC
1 ATGTGGCGATGGTGGTCGAGGTAACTGCCCGTACCAGGGGCCATC
* * * * *
1944857 TTAT-GCTGATGGTGGTCGAGGCAAGTGCCCATACCA
1 ATGTGGC-GATGGTGGTCGAGGTAACTGCCCGTACCA
1944893 AAGGGCAACC
Statistics
Matches: 99, Mismatches: 26, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 1 0.01
45 98 0.99
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.23
Consensus pattern (45 bp):
ATGTGGCGATGGTGGTCGAGGTAACTGCCCGTACCAGGGGCCATC
Found at i:1944941 original size:13 final size:13
Alignment explanation
Indices: 1944923--1944947 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1944913 ATGGTCGATG
1944923 CATGTGCCATCAC
1 CATGTGCCATCAC
1944936 CATGTGCCATCA
1 CATGTGCCATCA
1944948 TCTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:1945857 original size:158 final size:159
Alignment explanation
Indices: 1945588--1945976 Score: 437
Period size: 158 Copynumber: 2.5 Consensus size: 159
1945578 CCCACTTTTT
* * ** *
1945588 CGGCCGACTAAGTGCCCGCACGCTCGTTCCGTGGGTTGTTTTAAGCATACGGAGTTCATTCCATG
1 CGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* * * * * * *
1945653 TCTAAGCTCCAGTCAGACTGAGGGTTGTGGCAGTGGGATTGGCAGCACGCAGAG-GGGACCGGGC
66 TCTAAGCCCCAGCCAGACTGAGGGTTGTAGCAGTCGGATCGACAGCACGCAAAGAGGGACCGGGC
***
1945717 CGATCCCCAACTTG-AGCATTCTGTGTCTC
131 CGATCCCCAACTTGCA-CATTCTACCTCTC
* * * * *
1945746 CGGCCGCCTAAGCCCCCGCACGTTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATG
1 CGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
* * *
1945811 TCTAAGCCCCAGCCGGA-TCGAGGGTTGTAGCAGTCGGATCGACAGCACGTAAAGAGGGACTGGG
66 TCTAAGCCCCAGCCAGACT-GAGGGTTGTAGCAGTCGGATCGACAGCACGCAAAGAGGGACCGGG
* *
1945875 TCGATCCCCAGCTTGCACATTCTACCTCTC
130 CCGATCCCCAACTTGCACATTCTACCTCTC
* * * **
1945905 CGGTCGGCTCAA-CGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
1 CGGCCGACT-AAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCA
1945969 -GTCTAAGC
64 TGTCTAAGC
1945977 ATACAGAGTT
Statistics
Matches: 193, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
157 1 0.01
158 99 0.51
159 87 0.45
160 6 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (159 bp):
CGGCCGACTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATG
TCTAAGCCCCAGCCAGACTGAGGGTTGTAGCAGTCGGATCGACAGCACGCAAAGAGGGACCGGGC
CGATCCCCAACTTGCACATTCTACCTCTC
Found at i:1946001 original size:26 final size:26
Alignment explanation
Indices: 1945949--1946001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1945939 GTTGACTTAG
* *
1945949 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1945975 GCATACAGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1946001 G
1 G
1946002 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1946569 original size:45 final size:45
Alignment explanation
Indices: 1946443--1946570 Score: 139
Period size: 45 Copynumber: 2.8 Consensus size: 45
1946433 AGGGCTCAGT
* ** * * *
1946443 ATGTGTCGATGGTGGTCAAGGCAATCACCCGCACCACGGCCCAAC
1 ATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAAC
* * * * *
1946488 ATGTGCCGATGGTGTTTGATGCAACCGCCTGCACCAGGGGCCATC
1 ATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAAC
* *
1946533 TTGTGCCGATGGTGGTTGAGGCAACCGCCCGTACCAGG
1 ATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGG
1946571 ACCTACCTTT
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.20
Consensus pattern (45 bp):
ATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAAC
Found at i:1947538 original size:26 final size:26
Alignment explanation
Indices: 1947496--1947548 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1947486 GTTAACTTAT
*
1947496 GCATATGGAGTTCATTCACAGTCTAA
1 GCATATGGAGTTAATTCACAGTCTAA
* **
1947522 GCATATGGTGTTAATTCTGAGTCTAA
1 GCATATGGAGTTAATTCACAGTCTAA
1947548 G
1 G
1947549 ATCTGATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
GCATATGGAGTTAATTCACAGTCTAA
Found at i:1948045 original size:45 final size:45
Alignment explanation
Indices: 1947996--1948095 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
1947986 GAAATATGCC
* * *
1947996 GATGGTGGTTAAGGTAACCGCCCGCACCACGGCTCAGCATGTGCT
1 GATGGTGGTCAAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCT
* * * * * * *
1948041 GATGGTGCTCGATGCAACCGCCTGCACCAAGGGTCATCTTGTGCT
1 GATGGTGGTCAAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCT
1948086 GATGGTGGTC
1 GATGGTGGTC
1948096 TCGGTAACCA
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (45 bp):
GATGGTGGTCAAGGCAACCGCCCGCACCAAGGCTCAGCATGTGCT
Found at i:1948440 original size:11 final size:11
Alignment explanation
Indices: 1948424--1948451 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
1948414 GTGCTTGTAC
1948424 TTGGCCCTATA
1 TTGGCCCTATA
1948435 TTGGCCCTATA
1 TTGGCCCTATA
1948446 TTGGCC
1 TTGGCC
1948452 ACCTATCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.29, G:0.21, T:0.36
Consensus pattern (11 bp):
TTGGCCCTATA
Found at i:1949273 original size:196 final size:196
Alignment explanation
Indices: 1948950--1949324 Score: 479
Period size: 196 Copynumber: 1.9 Consensus size: 196
1948940 GTGTGCTCCA
* ** * * ** *
1948950 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGACCCACAGCGGGATCGTTAGCACGCA
1 AGTCTAAGATCAGACCAGACCGAGGGTTAAGATAGCAGGACCAACAGCAAGATCGGTAGCACGCA
* * * * * * *
1949015 GAGGGGACCAGGTCGATCCCCGGCTTACGCATTTTACCTCTTTGGCCGGCTGAGCACCCGCACGC
66 GAGGGGACCAGGGCGATCCCAGGCTTACGCATTCTACCTCTTCGACCGACTGAGCACCCGCACAC
1949080 TCGTTTCGTGGGTTGACTTAGGCATA-GAGAGTTCATCCCCA-GTCTAAGCATACGGAGTTCATT
131 TCGTTTCGTGGGTTGACTTAGGCATACG-GAGTTCAT-CCCATGTCTAAGCATACGGAGTTCATT
1949143 CCC
194 CCC
1949146 AGTCTAAGATCAGACCAGACCGAGGGTTAAGATAG-ATGGACCAACAGCAAGATCGGTAGCACGC
1 AGTCTAAGATCAGACCAGACCGAGGGTTAAGATAGCA-GGACCAACAGCAAGATCGGTAGCACGC
* * * ** *
1949210 AGGGGGGATC-GGGCGAATCCCAGGCTTGCGCATTCTGTCTCTTCGACCGACTGAGCCCCCGCAC
65 AGAGGGGACCAGGGCG-ATCCCAGGCTTACGCATTCTACCTCTTCGACCGACTGAGCACCCGCAC
* *
1949274 ACTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 ACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
1949325 CCCAATCGAA
Statistics
Matches: 152, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
195 8 0.05
196 143 0.94
197 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.21
Consensus pattern (196 bp):
AGTCTAAGATCAGACCAGACCGAGGGTTAAGATAGCAGGACCAACAGCAAGATCGGTAGCACGCA
GAGGGGACCAGGGCGATCCCAGGCTTACGCATTCTACCTCTTCGACCGACTGAGCACCCGCACAC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTCATTCC
C
Found at i:1949485 original size:26 final size:26
Alignment explanation
Indices: 1949456--1949508 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1949446 GTTGACTTTG
1949456 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
** * *
1949482 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
1949508 G
1 G
1949509 ATCGGACTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:1951452 original size:136 final size:136
Alignment explanation
Indices: 1951195--1951442 Score: 347
Period size: 136 Copynumber: 1.8 Consensus size: 136
1951185 CAAGACCGAC
*
1951195 AGCACGCAGAGGGGGATCAGGCCGATCCCTGGCTTGCACAGTATGCCTCTTCGACCCGTTCAACG
1 AGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCACAGTATGCCTCTTCGACCCGTTCAACG
*
1951260 CCCGCATACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
66 CCCGCATACTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
1951325 GACAGT
131 GACAGT
** * * * * * *
1951331 AGCACGCAGAGGGGGACCAGGCTTATCCTTGGCTTGCACA-TCTTGCCTCTTTGA-TCGATTGAG
1 AGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCACAGT-ATGCCTCTTCGACCCG-TTCAA
* * *
1951394 CGCTCGCATGCTCATTTCGTGGGTTGACTAAGGCATACGGAGTTCATTC
64 CGCCCGCATACTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTC
1951443 TCGATCTAAG
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
135 3 0.03
136 94 0.97
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.25
Consensus pattern (136 bp):
AGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCACAGTATGCCTCTTCGACCCGTTCAACG
CCCGCATACTCATTTCGTGGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC
GACAGT
Found at i:1951805 original size:45 final size:45
Alignment explanation
Indices: 1951755--1951915 Score: 151
Period size: 45 Copynumber: 3.6 Consensus size: 45
1951745 CGAGGCTCGA
* * **
1951755 CATGTGTCGATGGTGGTCGAGGCAACCACCTGCACCACCGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAG
* * * * * *
1951800 CATGTGCCGATGGTGTTCGATGCAACCGCCCGTACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAG
* * **
1951845 CTTGTGCCGATGGTGGTCAAGGCAAACCACCCGCACTTGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGC-AACCACCCGCACCAGGGCCCAG
* * **
1951891 CTTGTGTCGATGGCAGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1951916 GTGCCCATAC
Statistics
Matches: 91, Mismatches: 24, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
45 56 0.62
46 35 0.38
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAG
Found at i:1952895 original size:26 final size:26
Alignment explanation
Indices: 1952859--1952911 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1952849 GTTGACTTAG
*
1952859 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1952885 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1952911 G
1 G
1952912 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1954361 original size:45 final size:45
Alignment explanation
Indices: 1954281--1954390 Score: 123
Period size: 45 Copynumber: 2.4 Consensus size: 45
1954271 TAGGGGCCAT
* * *
1954281 CTTGTGCCAATGGTGGTCGAGGCAACCGTCTGTACC-AAGGCTCAA
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGTACCAAAGGCT-AA
** * *
1954326 CTTGTGCCGATGGTGGTCGAGGCAAGTGCCAGTACCAAAGGGTAG
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGTACCAAAGGCTAA
* *
1954371 CCTGTGCCGATGATGGTCGA
1 CTTGTGCCGATGGTGGTCGA
1954391 TGCATACGGA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 50 0.91
46 5 0.09
ACGTcount: A:0.21, C:0.24, G:0.34, T:0.22
Consensus pattern (45 bp):
CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGTACCAAAGGCTAA
Found at i:1955522 original size:45 final size:45
Alignment explanation
Indices: 1955442--1955551 Score: 123
Period size: 45 Copynumber: 2.4 Consensus size: 45
1955432 TAGGGGCCAT
* * *
1955442 CTTGTGCCAATGGTGGTCGAGGCAACCGTCTGTACC-AAGGCTCAA
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGTACCAAAGGCT-AA
** * *
1955487 CTTGTGCCGATGGTGGTCGAGGCAAGTGCCAGTACCAAAGGGTAG
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGTACCAAAGGCTAA
* *
1955532 CCTGTGCCGATGATGGTCGA
1 CTTGTGCCGATGGTGGTCGA
1955552 TGCATACGGA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 50 0.91
46 5 0.09
ACGTcount: A:0.21, C:0.24, G:0.34, T:0.22
Consensus pattern (45 bp):
CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGTACCAAAGGCTAA
Found at i:1956206 original size:26 final size:26
Alignment explanation
Indices: 1956176--1956228 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1956166 GTTGACTTAG
1956176 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
1956202 GCATACGGAGTTTATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1956228 G
1 G
1956229 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1957737 original size:26 final size:26
Alignment explanation
Indices: 1957691--1957741 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1957681 TGACTTAGGT
*
1957691 ATACAGAGTTCATCCCGAGTCTAAGC
1 ATACAGAGTTCATACCGAGTCTAAGC
1957717 ATACAGAGTTCATTACC-AGTCTAAG
1 ATACAGAGTTCA-TACCGAGTCTAAG
1957742 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATACCGAGTCTAAGC
Found at i:1958620 original size:45 final size:44
Alignment explanation
Indices: 1958548--1958711 Score: 141
Period size: 45 Copynumber: 3.7 Consensus size: 44
1958538 CGAGGCTTGG
* * * * * * *
1958548 CATGTGTCGATGGCGGTTGAGGTAACCGCCTGCACC-ATGGCCGA
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAAGGCC-A
* * * *
1958592 GCATGTGCCGATGGTGTTCGATGCAACCGCCCACACCAAGGGCCA
1 -CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAAGGCCA
* * *
1958637 TCTTGTGCCGATGGTGATCGAGGCAATCACCCGCACCAAAGGCCCA
1 -CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAAGG-CCA
* *
1958683 CATGTGTCGATGCTGATCGAGGCAACCGC
1 CATGTGCCGATGGTGATCGAGGCAACCGC
1958712 TTGCACTAGG
Statistics
Matches: 95, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
45 87 0.92
46 8 0.08
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.18
Consensus pattern (44 bp):
CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAAAGGCCA
Found at i:1959729 original size:26 final size:26
Alignment explanation
Indices: 1959693--1959745 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1959683 GTTGACTTAG
*
1959693 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
* *
1959719 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
1959745 G
1 G
1959746 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:1961863 original size:26 final size:26
Alignment explanation
Indices: 1961819--1961869 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1961809 TTGGCTTAGG
* *
1961819 CATATGGAGTTCATCCCCAGTCTAAA
1 CATACGGAGTTCATCCCCAATCTAAA
* *
1961845 CATACGGAGTTCGTTCCCAATCTAA
1 CATACGGAGTTCATCCCCAATCTAA
1961870 GATCGAATCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAATCTAAA
Found at i:1962212 original size:26 final size:26
Alignment explanation
Indices: 1962175--1962225 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1962165 TGACTTTGGG
*
1962175 ATATGGAGTTCATTCCCAGTCTAAGC
1 ATATGGAATTCATTCCCAGTCTAAGC
*
1962201 ATATGGAATTCATTTCCAGTCTAAG
1 ATATGGAATTCATTCCCAGTCTAAG
1962226 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATATGGAATTCATTCCCAGTCTAAGC
Found at i:1968841 original size:26 final size:26
Alignment explanation
Indices: 1968805--1968857 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1968795 GTTGACTTAG
1968805 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1968831 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1968857 G
1 G
1968858 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1969190 original size:26 final size:26
Alignment explanation
Indices: 1969160--1969212 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1969150 GTTGACTTAG
1969160 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* * *
1969186 GCATATGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1969212 G
1 G
1969213 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1969792 original size:45 final size:45
Alignment explanation
Indices: 1969682--1969800 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
1969672 AGGCAACCGT
* * * * * * * *
1969682 CCGCACCATGGCCCAGCATGTGCCAATGGTGTTCGATGCAACCGC
1 CCGCACCAGGGCCCAGCTTGTGCCGATGGTGGTCAAAGAAACCAC
* * * * *
1969727 CCGTACTAGGGGCCATCTTGTACCGATGGTGGTCAAAGAAACCAC
1 CCGCACCAGGGCCCAGCTTGTGCCGATGGTGGTCAAAGAAACCAC
1969772 CCGCACCAGGGCCCAGCTTGTGCCGATGG
1 CCGCACCAGGGCCCAGCTTGTGCCGATGG
1969801 CGATCGAGGC
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.18
Consensus pattern (45 bp):
CCGCACCAGGGCCCAGCTTGTGCCGATGGTGGTCAAAGAAACCAC
Found at i:1970992 original size:26 final size:26
Alignment explanation
Indices: 1970963--1971015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1970953 GTTGACTTAG
1970963 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1970989 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1971015 G
1 G
1971016 ATTGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1971557 original size:45 final size:45
Alignment explanation
Indices: 1971458--1971605 Score: 127
Period size: 45 Copynumber: 3.3 Consensus size: 45
1971448 GCTCGGCATG
* * * * * * *
1971458 TGCCGATAGTGGTCGAGGCAACCGCCCACACCATGG-CCAACATG
1 TGCCGATGGTGGTCAAGGCAACCGCCGACACCAGGGCCCAGCTTA
* * * * * * * *
1971502 TGCTGATGGTGTTCGATGTAACCGCCTACACCAGGGGCCATCTTA
1 TGCCGATGGTGGTCAAGGCAACCGCCGACACCAGGGCCCAGCTTA
*
1971547 TGCCGATGGTGGTCAAGGCAACCGCCGACACCAGGGCCCAGCTTG
1 TGCCGATGGTGGTCAAGGCAACCGCCGACACCAGGGCCCAGCTTA
* *
1971592 TGTCGATGGCGGTC
1 TGCCGATGGTGGTC
1971606 GAGGTAAGCG
Statistics
Matches: 82, Mismatches: 21, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
44 29 0.35
45 53 0.65
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGGTCAAGGCAACCGCCGACACCAGGGCCCAGCTTA
Found at i:1974243 original size:25 final size:26
Alignment explanation
Indices: 1974194--1974245 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1974184 GTTGACTTAG
*
1974194 GCATAGGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1974220 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1974245 G
1 G
1974246 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 11 0.46
26 13 0.54
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1974833 original size:45 final size:44
Alignment explanation
Indices: 1974682--1974839 Score: 136
Period size: 45 Copynumber: 3.5 Consensus size: 44
1974672 GGGCTCGACA
* * * *
1974682 TGTGCCGATGGTGGTCGAGGCAACCGCCCAAACCATGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACC-CCTACACCAGGGCCCAGCT
* * * * * * *
1974727 TGTGCTGATGGTGTTCGATGTAACCGCTCACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCCCT-ACACCAGGGCCCAGCT
* * * *
1974772 TATACCAATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACC-CCTACACCAGGGCCCAGCT
* *
1974817 TGTGCCGATGGCGGTCGAAGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
1974840 GTGCTCATAC
Statistics
Matches: 84, Mismatches: 27, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
44 1 0.01
45 81 0.96
46 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACCCCTACACCAGGGCCCAGCT
Found at i:1975799 original size:26 final size:26
Alignment explanation
Indices: 1975762--1975814 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1975752 GTTGACTTAG
1975762 GCATATGAAGTTCA-TCACCAGTCTAA
1 GCATATGAAGTTCATTC-CCAGTCTAA
*
1975788 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
1975814 G
1 G
1975815 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:1976155 original size:26 final size:26
Alignment explanation
Indices: 1976118--1976170 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1976108 GTTGACTTAG
1976118 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1976144 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
1976170 G
1 G
1976171 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1976549 original size:156 final size:158
Alignment explanation
Indices: 1976185--1976611 Score: 448
Period size: 156 Copynumber: 2.7 Consensus size: 158
1976175 GATCGATAGC
* * * * * * * * * *
1976185 AGCACGTAAAGGGGGATC-AGGCCGATCCTCGGCTTGCTCATCCTACCTCTTCGATCGACTGAGT
1 AGCACGTAGAGGGGGACCGA-GCCGATCCTCGACTTACGCATCCTAGCTCTCCGATCGGCTAAGC
* * *
1976249 GCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCCGGTCTAAGCCCCATT
65 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCGGTCTAAGCCCCATA
* ** *
1976314 CGGGCCAAGGGACCCGTAATGGGATCAAT
130 CGGACCAAGGGACCCACAACGGGATCAAT
* * * * **
1976343 AGCACGTAGAGGGGGACCGAGTCGATCCTCGGCTTACGCATCCTATCTCTCCGATTGG-TTGGCC
1 AGCACGTAGAGGGGGACCGAGCCGATCCTCGACTTACGCATCCTAGCTCTCCGATCGGCTAAG-C
* * * ** *
1976407 ACCCGCAGGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCTTGGTCTAAGCTCCA-A
65 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCGGTCTAAGCCCCATA
* *
1976471 C-GACCGAGGGACCCACAGCGGGATCAAT
130 CGGACCAAGGGACCCACAACGGGATCAAT
* ** * *
1976499 AGCATGTAGAGGGGGACCGAGCCGATCCTCGACTTGTGCATTCTAGCTCTCCGGTCGGCTAAGCA
1 AGCACGTAGAGGGGGACCGAGCCGATCCTCGACTTACGCATCCTAGCTCTCCGATCGGCTAAGCA
* * * *
1976564 CCCGCACGCTCGTTCCATGGGTTGACTTAGGCTTACGTAGTGCATTCC
66 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCC
1976612 TAGTCTCGAC
Statistics
Matches: 221, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
156 113 0.51
157 5 0.02
158 102 0.46
159 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (158 bp):
AGCACGTAGAGGGGGACCGAGCCGATCCTCGACTTACGCATCCTAGCTCTCCGATCGGCTAAGCA
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCGGTCTAAGCCCCATAC
GGACCAAGGGACCCACAACGGGATCAAT
Found at i:1976809 original size:45 final size:45
Alignment explanation
Indices: 1976748--1976904 Score: 136
Period size: 45 Copynumber: 3.5 Consensus size: 45
1976738 GGATGTGCCA
* *
1976748 ATGGTGGTTGAGGCAACCGCCCGAACC-ACGGCCCAACATGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGAACCAAAGG-CCAACATGTGTCG
* * * * *
1976793 ATGGTGTTCGATGCAACCGCCCGCACCAAAGGCCATCTTGTGTCG
1 ATGGTGGTCGAGGCAACCGCCCGAACCAAAGGCCAACATGTGTCG
* ** * * ** *
1976838 ATGGTGGTCGAGGCAATCGCTTGGACCAAGGGCCGGCATGTCTCG
1 ATGGTGGTCGAGGCAACCGCCCGAACCAAAGGCCAACATGTGTCG
* * *
1976883 ATGTTGATTGAGGCAACCGCCC
1 ATGGTGGTCGAGGCAACCGCCC
1976905 ACACCAAGGC
Statistics
Matches: 87, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
45 84 0.97
46 3 0.03
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACCGCCCGAACCAAAGGCCAACATGTGTCG
Found at i:1977939 original size:26 final size:26
Alignment explanation
Indices: 1977883--1977939 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
1977873 ATGGGTTGAC
*
1977883 TTAAGCATACGAAGTTCATCCCCAGT
1 TTAAGCATACGAAGTTCATCCCCAAT
* * *
1977909 CTAAGCATACGGAGTTCATTCCCAAT
1 TTAAGCATACGAAGTTCATCCCCAAT
1977935 TTAAG
1 TTAAG
1977940 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (26 bp):
TTAAGCATACGAAGTTCATCCCCAAT
Found at i:1978273 original size:26 final size:26
Alignment explanation
Indices: 1978243--1978295 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1978233 GTTGACTTAG
*
1978243 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
1978269 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
1978295 G
1 G
1978296 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:1979875 original size:26 final size:26
Alignment explanation
Indices: 1979846--1979898 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1979836 GTTGACTTAG
*
1979846 GCATAGGGAGGTCATCCCCAGTTTAA
1 GCATAGGGAGGTCATCCCCAGTCTAA
* * *
1979872 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATAGGGAGGTCATCCCCAGTCTAA
1979898 G
1 G
1979899 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATAGGGAGGTCATCCCCAGTCTAA
Found at i:1980231 original size:26 final size:26
Alignment explanation
Indices: 1980201--1980252 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1980191 TTGACATTGA
1980201 CATATGGAGTTCATTCCCAATCTAAG
1 CATATGGAGTTCATTCCCAATCTAAG
*
1980227 CATATGGAGTTCCTTCCCAATCTAAG
1 CATATGGAGTTCATTCCCAATCTAAG
1980253 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
CATATGGAGTTCATTCCCAATCTAAG
Found at i:1981554 original size:26 final size:26
Alignment explanation
Indices: 1981525--1981577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1981515 GTTGACTTCG
*
1981525 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
*
1981551 GCATACAGATTTCATCCCAAGTCTAA
1 GCATACAGAGTTCATCCCAAGTCTAA
1981577 G
1 G
1981578 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCAAGTCTAA
Found at i:1981916 original size:26 final size:26
Alignment explanation
Indices: 1981880--1981932 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1981870 GTTGACTTAG
* *
1981880 GCATATAGAGTTCCTTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
*
1981906 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
1981932 G
1 G
1981933 ATCGGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAATCTAA
Found at i:1982423 original size:45 final size:45
Alignment explanation
Indices: 1982372--1982486 Score: 167
Period size: 45 Copynumber: 2.6 Consensus size: 45
1982362 CGGGGCTCGA
*
1982372 CATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCACCTGCACCACGGCCCAG
* * * *
1982417 CATGTGCCGATGGTGTTCGATGCAACCACCTGCACCAGGGCCTAG
1 CATGTGCCGATGGTGGTCGAGGCAACCACCTGCACCACGGCCCAG
* *
1982462 CTTGTGCCGATGGCGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
1982487 GTGCCCGTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCACCTGCACCACGGCCCAG
Found at i:1983482 original size:26 final size:26
Alignment explanation
Indices: 1983452--1983504 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1983442 GTTGACTTAG
*
1983452 GCATACGGGGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1983478 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1983504 G
1 G
1983505 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1984404 original size:45 final size:45
Alignment explanation
Indices: 1984355--1984521 Score: 153
Period size: 45 Copynumber: 3.7 Consensus size: 45
1984345 CTTGCAACAG
* * *
1984355 GGGCCATCTTGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAA
1 GGGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGTACCAA
* * * * *
1984400 GGGCCAGCATGTACCGATGGTGATCGAGGCAA-C-CGCGTACCCCA
1 GGGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGTA-CCAA
* *
1984444 GGGCCTAGCTTATGCCGATAGTGGTCGAGGCAAGT-GCCCGTACCAAA
1 GGGCC-AGCTTGTGCCGATGGTGGTCGAGGCAA-TCGCCCGTACC-AA
* * *
1984491 GGG-CAGCCTGTGTCGATGATGGTCGAGGCAA
1 GGGCCAGCTTGTGCCGATGGTGGTCGAGGCAA
1984522 GTGCCTATAC
Statistics
Matches: 96, Mismatches: 20, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
43 4 0.04
44 9 0.09
45 71 0.74
46 3 0.03
47 9 0.09
ACGTcount: A:0.21, C:0.27, G:0.34, T:0.18
Consensus pattern (45 bp):
GGGCCAGCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGTACCAA
Found at i:1992842 original size:45 final size:45
Alignment explanation
Indices: 1992791--1992985 Score: 178
Period size: 45 Copynumber: 4.3 Consensus size: 45
1992781 TCGACATGTG
* *
1992791 CCGATGGTGGTCGAGGCAACCGCCTGCACCATGGCCCAGCATT-TA
1 CCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGC-TTGTA
* * * * * * *
1992836 CCGATGGTGTTCGATGCAATCGCCCGTACTAGGGGCCATCTTGTA
1 CCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTA
* * * * *
1992881 CCGATGGTGGTCAAGGCAATCGCCCGCACCAAGGG-CCGGCATGTG
1 CCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCTTGTA
* * * * *
1992926 CCGATGGTGATCAAGGCAACCGCCCGTACCAGGGCCCAACTTGTG
1 CCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTA
*
1992971 CTGATGGTGGTCGAG
1 CCGATGGTGGTCGAG
1992986 CCAAGTGCCC
Statistics
Matches: 120, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
44 6 0.05
45 110 0.92
46 4 0.03
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTA
Found at i:1992950 original size:90 final size:89
Alignment explanation
Indices: 1992791--1993024 Score: 238
Period size: 90 Copynumber: 2.6 Consensus size: 89
1992781 TCGACATGTG
* * * * * * * * * *
1992791 CCGATGGTGGTCGAGGCAACCGCCTGCACCATGGCCCAGCATTTACCGATGGTGTTCGATGCAAT
1 CCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCC-GCATGTGCCGATGGTGATCAAGGCAAC
* * *
1992856 CGCCCGTACTAGGGGCCATCTTGTA
65 CGCCCGTACCAGGGCCCAACTTGTA
*
1992881 CCGATGGTGGTCAAGGCAATCGCCCGCACCAAGGGCCGGCATGTGCCGATGGTGATCAAGGCAAC
1 CCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCC-GCATGTGCCGATGGTGATCAAGGCAAC
*
1992946 CGCCCGTACCAGGGCCCAACTTGTG
65 CGCCCGTACCAGGGCCCAACTTGTA
* * * *
1992971 CTGATGGTGGTCGAGCCAAGT-GCCCGTACCAAAGGGCAC-CCTGTGCCGATGGTG
1 CCGATGGTGGTCGAGGCAA-TCGCCCGCACC-AAGGGC-CGCATGTGCCGATGGTG
1993025 GTCCATGCAT
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
90 112 0.93
91 7 0.06
92 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (89 bp):
CCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGCATGTGCCGATGGTGATCAAGGCAACC
GCCCGTACCAGGGCCCAACTTGTA
Found at i:1993027 original size:135 final size:135
Alignment explanation
Indices: 1992785--1993027 Score: 296
Period size: 135 Copynumber: 1.8 Consensus size: 135
1992775 CGAGGCTCGA
* * * * * *
1992785 CATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCATGGCCCAGCATTTACCGATGGTGTTCGA
1 CATGTGCCGATGGTGATCAAGGCAACCGCCCGCACCAGGGCCCAACATTTACCGATGGTGGTCGA
* * * *
1992850 TGCAATCGCCCGTACTAGGGGCCATCTTGTACCGATGGTGGTCAAGGCAATCGCCCGCACCAAGG
66 TGCAATCGCCCGTACAAAGGGCCACCCTGTACCGATGGTGGTCAAGGCAATCGCCCGCACCAAGG
1992915 GCCGG
131 GCCGG
* * *
1992920 CATGTGCCGATGGTGATCAAGGCAACCGCCCGTACCAGGGCCCAAC-TTGTGCTGATGGTGGTCG
1 CATGTGCCGATGGTGATCAAGGCAACCGCCCGCACCAGGGCCCAACATT-TACCGATGGTGGTCG
*
1992984 A-GCCAAGT-GCCCGTACCAAAGGG-CACCCTGTGCCGATGGTGGTC
65 ATG-CAA-TCGCCCGTA-CAAAGGGCCACCCTGTACCGATGGTGGTC
1993028 CATGCATGTG
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
134 3 0.03
135 81 0.90
136 6 0.07
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (135 bp):
CATGTGCCGATGGTGATCAAGGCAACCGCCCGCACCAGGGCCCAACATTTACCGATGGTGGTCGA
TGCAATCGCCCGTACAAAGGGCCACCCTGTACCGATGGTGGTCAAGGCAATCGCCCGCACCAAGG
GCCGG
Found at i:1993939 original size:26 final size:26
Alignment explanation
Indices: 1993909--1993961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1993899 GTTGACTTAG
* *
1993909 GCATATAGAGTTTATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1993935 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1993961 G
1 G
1993962 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1994310 original size:159 final size:159
Alignment explanation
Indices: 1994030--1994450 Score: 537
Period size: 159 Copynumber: 2.7 Consensus size: 159
1994020 TGGGGACCGA
* * * * *
1994030 GTCGATCCCCG-GCTTGCACATTTTGCCTCTTC-AGTCGGCTGAGCACCTGCACGCTCATTTCAT
1 GTCGATCCCCGAG-TTGCGCATTATGCCTCTTCGAGTCGGCTGAGCACCCGCACGCTCGTTTCGT
**
1994093 GGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCA
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCA
* * * *
1994158 GTGGGACCGACAGCACGTAGAGGGGGATCAT
130 GCGGGACCGACAGCACGCAGAGGGGG-GCAG
** * *
1994189 GTCGATCCCCGAGTTGCGCATTATGCCTCTTCGAG-CGGCTGAGTGCCCGTACACTCGTTTCGTG
1 GTCGATCCCCGAGTTGCGCATTATGCCTCTTCGAGTCGGCTGAGCACCCGCACGCTCGTTTCGTG
* * *
1994253 GGTTGGCTTAGGCATGCGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACCGAGGGTTGTGGCAG
66 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAG
* *
1994318 CGGGATCGGCAGCACGCAGAGGGGGGCAG
131 CGGGACCGACAGCACGCAGAGGGGGGCAG
* * * * *
1994347 GATCGATCACCGACTTGCGCATTATGCCTCTCCG-GTCGACTCAGCACCCGCACGCTCGTTTCGT
1 G-TCGATCCCCGAGTTGCGCATTATGCCTCTTCGAGTCGGCTGAGCACCCGCACGCTCGTTTCGT
*
1994411 GGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGC
65 GGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGC
1994451 ATACAGAGTT
Statistics
Matches: 226, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
158 5 0.02
159 218 0.96
160 3 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
GTCGATCCCCGAGTTGCGCATTATGCCTCTTCGAGTCGGCTGAGCACCCGCACGCTCGTTTCGTG
GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTGTGGCAG
CGGGACCGACAGCACGCAGAGGGGGGCAG
Found at i:1994459 original size:26 final size:26
Alignment explanation
Indices: 1994423--1994475 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1994413 GTTGACTTAG
* *
1994423 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1994449 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1994475 G
1 G
1994476 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.