Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 18 of 120
Found at i:1995049 original size:45 final size:44
Alignment explanation
Indices: 1994935--1995088 Score: 130
Period size: 45 Copynumber: 3.4 Consensus size: 44
1994925 CAACATGTGC
* *
1994935 CGATGGTGGTCGAGGCAACCGCCCGCACC-ATGGCCCAGCATGTGT
1 CGATGGTGGTCGAGGCAA-CGCCCGCACCGA-GGGCCAGCATATGT
* * * * * * *
1994980 CGTTAGTGTTTGATGCAACTGCCCGCACCGAGGGCCATCTTATGT
1 CGATGGTGGTCGAGGCAAC-GCCCGCACCGAGGGCCAGCATATGT
* * * *
1995025 CGATGGTGGTCGAGGCAATCGCCCGTACCGATGGCCAGCATGTGC
1 CGATGGTGGTCGAGGCAA-CGCCCGCACCGAGGGCCAGCATATGT
* *
1995070 CGATGGTGATCAAGGCAAC
1 CGATGGTGGTCGAGGCAAC
1995089 TGTCCACATG
Statistics
Matches: 84, Mismatches: 22, Indels: 7
0.74 0.19 0.06
Matches are distributed among these distances:
44 2 0.02
45 80 0.95
46 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (44 bp):
CGATGGTGGTCGAGGCAACGCCCGCACCGAGGGCCAGCATATGT
Found at i:2000045 original size:26 final size:26
Alignment explanation
Indices: 2000008--2000060 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
1999998 GCTGACTTAG
2000008 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
2000034 GCATAC-GCAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
2000060 G
1 G
2000061 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2000539 original size:45 final size:44
Alignment explanation
Indices: 2000488--2000648 Score: 144
Period size: 45 Copynumber: 3.6 Consensus size: 44
2000478 TCGAGGCTCG
* * * *
2000488 GCATGTGCCGATGGTGGTGGAGGCAACCACCTGCACCATGGCCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACCACC-GCACAAGGGCCCA
* * * *
2000533 GCATGTGCCAATGGTGTTCGATGCAACCGATCGCACAAGGGGCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACC-ACCGCACAAGGGCCCA
* * * *
2000578 TCTTATGCCAATTGTGGTCGAGGCAACCACC-CACACTAGGGCCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACCACCGCACA--AGGGCCCA
* * *
2000623 GCTTGTGCCGATGGCGGTCGAGGCAA
1 GCATGTGCCAATGGTGGTCGAGGCAA
2000649 TTGCCCGTAC
Statistics
Matches: 92, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
43 4 0.04
44 2 0.02
45 84 0.91
46 2 0.02
ACGTcount: A:0.22, C:0.29, G:0.31, T:0.18
Consensus pattern (44 bp):
GCATGTGCCAATGGTGGTCGAGGCAACCACCGCACAAGGGCCCA
Found at i:2001777 original size:26 final size:26
Alignment explanation
Indices: 2001747--2001799 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2001737 GTTAACTTAG
*
2001747 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2001773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2001799 G
1 G
2001800 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2004299 original size:26 final size:26
Alignment explanation
Indices: 2004263--2004315 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2004253 GTTGACTTAG
2004263 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
2004289 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
2004315 G
1 G
2004316 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:2007528 original size:45 final size:44
Alignment explanation
Indices: 2007444--2007606 Score: 168
Period size: 45 Copynumber: 3.7 Consensus size: 44
2007434 GGGCCAACCT
* *
2007444 GGGCTCAGCATGTG-CTGATGGTGGTCGAGACAACTGCCCGCACCA
1 GGGCCCAGCATGTGTC-GATGGTGGTCGAG-CAACCGCCCGCACCA
*
2007489 GGGCCCAGCATGTGTCGATGGTGTTCGATGCAACCGCCCGCACCA
1 GGGCCCAGCATGTGTCGATGGTGGTCGA-GCAACCGCCCGCACCA
* * * * *
2007534 GGGGCCATCTTGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCA
1 GGGCCCAGCATGTGTCGATGGTGGTCGA-GCAACCGCCCGCACCA
* * **
2007579 AGGCCCAGCTTGTGT-GATGCAGGTCGAG
1 GGGCCCAGCATGTGTCGATGGTGGTCGAG
2007607 GCAAGTGCCC
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.01
44 9 0.09
45 87 0.88
46 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (44 bp):
GGGCCCAGCATGTGTCGATGGTGGTCGAGCAACCGCCCGCACCA
Found at i:2011359 original size:45 final size:45
Alignment explanation
Indices: 2011209--2011405 Score: 180
Period size: 45 Copynumber: 4.4 Consensus size: 45
2011199 AGGCTCGGCA
* *
2011209 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACAGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCAGCT
* * * * * * ** **
2011254 TGTGCCAATGGTGTTCGATGCAATCG-CCGCACCTGGGGGCATTT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCAGCT
* ** *
2011298 TATGCTAATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCAGCT
* ** * * *
2011343 TGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGCACAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCAGCT
*
2011388 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2011406 TGCATGTGCC
Statistics
Matches: 117, Mismatches: 34, Indels: 2
0.76 0.22 0.01
Matches are distributed among these distances:
44 31 0.26
45 86 0.74
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCAGCT
Found at i:2012297 original size:26 final size:26
Alignment explanation
Indices: 2012261--2012311 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2012251 GGTTGATTAG
2012261 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
2012287 GCATGCGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
2012312 TGATAGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2012667 original size:25 final size:26
Alignment explanation
Indices: 2012616--2012667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2012606 GTTGACTTAG
*
2012616 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2012642 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2012667 G
1 G
2012668 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2013246 original size:45 final size:45
Alignment explanation
Indices: 2013117--2013249 Score: 119
Period size: 45 Copynumber: 3.0 Consensus size: 45
2013107 ACATGTGTCG
* * * * * *
2013117 ATGGTGGTCGAGGCAACCGCCCGCACCACGG-CTCAGCATGT-CCG
1 ATGGTGGTTGAGGCAACCACCTGCACCAAGGCCT-AGCTTGTGCCA
* * * * *
2013161 ATGGTGTTTGATGCAACCCCCTGCACCAGGGGCC-ATCTTGTGCCA
1 ATGGTGGTTGAGGCAACCACCTGCACCA-AGGCCTAGCTTGTGCCA
*
2013206 ATGGTGGTTGAGGCAACTACCTGCACCAAGGCCTAGCTTGTGCC
1 ATGGTGGTTGAGGCAACCACCTGCACCAAGGCCTAGCTTGTGCC
2013250 GATGCCGATC
Statistics
Matches: 70, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
44 32 0.46
45 37 0.53
46 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (45 bp):
ATGGTGGTTGAGGCAACCACCTGCACCAAGGCCTAGCTTGTGCCA
Found at i:2014257 original size:26 final size:26
Alignment explanation
Indices: 2014205--2014257 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2014195 GTTGACTTAG
* * *
2014205 GCATATGGAGTTCATCCCTAGTTTAA
1 GCATACGGAGTTCATCCCTAATCTAA
2014231 GCATACGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
2014257 G
1 G
2014258 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:2014780 original size:26 final size:26
Alignment explanation
Indices: 2014750--2014802 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2014740 GTTGGCTTAG
2014750 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2014776 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2014802 G
1 G
2014803 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2015353 original size:90 final size:91
Alignment explanation
Indices: 2015238--2015429 Score: 212
Period size: 90 Copynumber: 2.1 Consensus size: 91
2015228 CGCAGCCCAG
* * * * * *
2015238 CATGTGCCGATGGTGTTTGATGCAACCACCCACACCAAGGGCC-ATCTTGTACCGATGGTGGTCG
1 CATGTGCCGATGGTGATCGAGGCAACCAACCACACC-AGGGCCTAGCTTGTACCGATGGCGGTCG
*
2015302 AGGCAA-TCGCCTGTACC-AAGGGTTGA
65 AGGCAAGT-GCCCGTACCAAAGGGTTGA
* ** **
2015328 CATGTGTCGATGGTGATCGAGGCAACCAACTGCACCAGGGCCTAGCTTGTGTCGATGGCGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCAACCACACCAGGGCCTAGCTTGTACCGATGGCGGTCGA
*
2015393 GGCAAGTGCCCGTACCAAAGGGTAG-
66 GGCAAGTGCCCGTACCAAAGGGTTGA
*
2015418 CCTGTGCCGATG
1 CATGTGCCGATG
2015430 ATGGTCGATG
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
89 6 0.07
90 70 0.83
91 8 0.10
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (91 bp):
CATGTGCCGATGGTGATCGAGGCAACCAACCACACCAGGGCCTAGCTTGTACCGATGGCGGTCGA
GGCAAGTGCCCGTACCAAAGGGTTGA
Found at i:2015632 original size:16 final size:16
Alignment explanation
Indices: 2015607--2015646 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
2015597 AACCAGCGGC
*
2015607 ATTGGTGGTTCCGACG
1 ATTGGGGGTTCCGACG
*
2015623 ATTGGGGGTTCCGATG
1 ATTGGGGGTTCCGACG
2015639 ATTGGGGG
1 ATTGGGGG
2015647 GCCAGGGGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.12, C:0.12, G:0.45, T:0.30
Consensus pattern (16 bp):
ATTGGGGGTTCCGACG
Found at i:2016749 original size:26 final size:26
Alignment explanation
Indices: 2016709--2016761 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2016699 GTTGACTTAG
2016709 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* * *
2016735 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
2016761 G
1 G
2016762 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:2017099 original size:26 final size:26
Alignment explanation
Indices: 2017060--2017117 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
2017050 CACGGGTTGA
2017060 CTAAGGCATACAGAGTTCATTCCCAGG
1 CTAA-GCATACAGAGTTCATTCCCAGG
*
2017087 CTAAGCATACAGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGG
2017113 CTAAG
1 CTAAG
2017118 ATCAGACCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGG
Found at i:2017720 original size:26 final size:26
Alignment explanation
Indices: 2017683--2017735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2017673 GTTGACTTAG
* *
2017683 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2017709 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2017735 G
1 G
2017736 ATCGAACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2019725 original size:26 final size:26
Alignment explanation
Indices: 2019673--2019725 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2019663 GTTGACTTAG
* *
2019673 GCATACGGAGTTCATTCCCATTTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2019699 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2019725 G
1 G
2019726 ATCAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2024196 original size:26 final size:26
Alignment explanation
Indices: 2024166--2024218 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2024156 GTTGACTTAG
2024166 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2024192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2024218 G
1 G
2024219 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2024548 original size:26 final size:26
Alignment explanation
Indices: 2024518--2024570 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2024508 GTTGACTTAG
2024518 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2024544 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2024570 G
1 G
2024571 ATCAAACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2025165 original size:45 final size:45
Alignment explanation
Indices: 2025067--2025166 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 45
2025057 TGTGCCAATA
* * *
2025067 GTGGTCGAGGCAATCACTCGTACCAAGGGCCGGCATGTGCCGAAG
1 GTGGTCGAGGCAATCACTCGCACCAAGGGCCAGCATGTACCGAAG
* * * * *
2025112 GTGATCGAGGCAATCGCTCGCACC-AGGGCCCAGCTTGTACTGATG
1 GTGGTCGAGGCAATCACTCGCACCAAGGG-CCAGCATGTACCGAAG
2025157 GTGGTCGAGG
1 GTGGTCGAGG
2025167 TAAGCACCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 4 0.09
45 41 0.91
ACGTcount: A:0.20, C:0.26, G:0.36, T:0.18
Consensus pattern (45 bp):
GTGGTCGAGGCAATCACTCGCACCAAGGGCCAGCATGTACCGAAG
Found at i:2027017 original size:45 final size:45
Alignment explanation
Indices: 2026948--2027151 Score: 185
Period size: 45 Copynumber: 4.5 Consensus size: 45
2026938 GGGGCTCGGT
* * * *
2026948 ATGTGCCGATGATGGTCGAGGCAACCGCCCATACCACGGCCCAGC
1 ATGTACCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGC
* * * * * *
2026993 ATGTACCGATGGTGTTCGATGCAACCACCTACACCAGGGGCCATC
1 ATGTACCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGC
* * * * *
2027038 TTATACCGATGGTGGTCGAGGCAATCGCCCACACCAAGGG-TCAAC
1 ATGTACCGATGGTGGTCGAGGCAACCGCCCACACC-AGGGCCCAGC
* * * * *
2027083 ATGTCCCGATGGTGATTGAGGTAACCGCCCGCACCAGGGCCCAGC
1 ATGTACCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGC
* * *
2027128 TTGTGCCGATGGCGGTCGAGGCAA
1 ATGTACCGATGGTGGTCGAGGCAA
2027152 GTGCCCGTAC
Statistics
Matches: 122, Mismatches: 35, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
44 4 0.03
45 114 0.93
46 4 0.03
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.17
Consensus pattern (45 bp):
ATGTACCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGC
Found at i:2027118 original size:90 final size:90
Alignment explanation
Indices: 2026953--2027151 Score: 220
Period size: 90 Copynumber: 2.2 Consensus size: 90
2026943 TCGGTATGTG
* * * * *
2026953 CCGATGATGGTCGAGGCAACCGCCCATACCACGGCCCAGCATGTACCGATGGTGTTCGATGCAAC
1 CCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAACATGTACCGATGGTGTTCGAGGCAAC
* * *
2027018 CACCTACACCAGGGGCCATCTTATA
66 CACCCACACCAGGGCCCAGCTTATA
* ** * *
2027043 CCGATGGTGGTCGAGGCAATCGCCCACACCAAGGGTCAACATGTCCCGATGGTGATT-GAGGTAA
1 CCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAACATGTACCGATGGTG-TTCGAGGCAA
* * * *
2027107 CCGCCCGCACCAGGGCCCAGCTTGTG
65 CCACCCACACCAGGGCCCAGCTTATA
*
2027133 CCGATGGCGGTCGAGGCAA
1 CCGATGGTGGTCGAGGCAA
2027152 GTGCCCGTAC
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 88 0.98
91 2 0.02
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.17
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCAACATGTACCGATGGTGTTCGAGGCAAC
CACCCACACCAGGGCCCAGCTTATA
Found at i:2028120 original size:26 final size:26
Alignment explanation
Indices: 2028090--2028142 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2028080 GTTGACTTAG
2028090 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
2028116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2028142 G
1 G
2028143 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2030044 original size:26 final size:26
Alignment explanation
Indices: 2030014--2030066 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2030004 GTTGACTTAG
* *
2030014 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
2030040 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
2030066 G
1 G
2030067 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:2030635 original size:275 final size:274
Alignment explanation
Indices: 2030092--2030636 Score: 646
Period size: 275 Copynumber: 2.0 Consensus size: 274
2030082 GGGTTACGGT
* * * * * * *
2030092 AGCAGGACCAGTAGCAGGATCGATAGCACGTAGGGGGGATCGGGTCTATCCCGGCTTCCGCATTC
1 AGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCGGCTTCCGCATTC
* ** * * *
2030157 TGCCTCTTTAGCTGGCTGAGCCCCCGTACGCTCATTTCGTGGGTTAGCTTAGGCATACGGAGTTC
66 TACCTCTCCAGCTGGCTGAGCCCCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTC
* *
2030222 ATTCCATGTCTAAGCCCTAGCTAGACCGAAGGTTGTGGCAACGGGACCAGCAGCACGCAGAGAGG
131 ATTCCATGTCTAAGCCCCAGCTAGACCGAAGGTTGTGGCAACGGGACCAGCAGCACACAGAGAGG
* * * * * * ** * *
2030287 GACCGGGTCGATCCCCGGCTTGCGCATTATGCCTTTCTGGCCTGCTAAGCGTCAGCGCGCTCATT
196 GACCGGGTCAATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTAAGCACCAGCACACTCATT
2030352 TCATGGGTTGCGAC
261 TCATGGGTTGCGAC
* * * *
2030366 AGCAGGACCAGCAGTAGGATTGGCAGCACGCAAGGGGGACCGGGCCGATCCCCGGCTTGCGCATT
1 AGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGAT-CCCGGCTTCCGCATT
* * * * *
2030431 CTACCTCTCCGGCTGGCTGAGCGCCCGCACGTTCGTTTCATGGGTTGGCTTAGGCATACAGAGTT
65 CTACCTCTCCAGCTGGCTGAGCCCCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTT
* * * * *
2030496 CATTCCATGTCTAAGCCCCAG-TCGGACCGAGGGTTGTGGCAGCGGGAGCGGCAGCACACAGAG-
130 CATTCCATGTCTAAGCCCCAGCT-AGACCGAAGGTTGTGGCAACGGGACCAGCAGCACACAGAGA
* * *
2030559 GAGGACCGGG-CTAATCCCCGGCTTACGCATTATGCCTCTCCGATCAGCTTAGCACCCGCACACT
194 G-GGACCGGGTC-AATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTAAGCACCAGCACACT
*
2030623 CATTTTATGGGTTG
257 CATTTCATGGGTTG
2030637 ACTTAGGCAT
Statistics
Matches: 224, Mismatches: 43, Indels: 7
0.82 0.16 0.03
Matches are distributed among these distances:
274 42 0.19
275 182 0.81
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (274 bp):
AGCAGGACCAGCAGCAGGATCGACAGCACGCAAGGGGGACCGGGCCGATCCCGGCTTCCGCATTC
TACCTCTCCAGCTGGCTGAGCCCCCGCACGCTCATTTCATGGGTTAGCTTAGGCATACAGAGTTC
ATTCCATGTCTAAGCCCCAGCTAGACCGAAGGTTGTGGCAACGGGACCAGCAGCACACAGAGAGG
GACCGGGTCAATCCCCGGCTTACGCATTATGCCTCTCCGACCAGCTAAGCACCAGCACACTCATT
TCATGGGTTGCGAC
Found at i:2033756 original size:26 final size:26
Alignment explanation
Indices: 2033727--2033779 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2033717 GTTGACTTAG
* * *
2033727 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGGTCATCCCCAATCTAA
*
2033753 GCATACAGAGGTCATTCCCAATCTAA
1 GCATACAGAGGTCATCCCCAATCTAA
2033779 G
1 G
2033780 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGGTCATCCCCAATCTAA
Found at i:2034625 original size:45 final size:45
Alignment explanation
Indices: 2034574--2034733 Score: 185
Period size: 45 Copynumber: 3.6 Consensus size: 45
2034564 CGGGGCACTA
* * *
2034574 CATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGCCCAG
* * * * *
2034619 CATGTGCTGATGGTGTTCGATGCAACCGCTCGCACCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGCCCAG
* * * *
2034664 CTTATGCCGATGGTGGTCGAGGCAACCGCTCACACCAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGCCCAG
* * *
2034709 CTTGTGTCGATGGCGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2034734 TTGCCCTTTC
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAAGGCCCAG
Found at i:2036058 original size:26 final size:26
Alignment explanation
Indices: 2036028--2036080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2036018 GTTGACTTAG
*
2036028 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
*
2036054 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
2036080 G
1 G
2036081 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:2037490 original size:26 final size:26
Alignment explanation
Indices: 2037460--2037510 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2037450 TGACTTAGTC
2037460 ATACAGAGTTCATCCCCAGTCTAAGG
1 ATACAGAGTTCATCCCCAGTCTAAGG
* *
2037486 ATACAGAGTTCGTTCCCAGTCTAAG
1 ATACAGAGTTCATCCCCAGTCTAAG
2037511 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAGTCTAAGG
Found at i:2038668 original size:45 final size:45
Alignment explanation
Indices: 2038563--2038696 Score: 126
Period size: 45 Copynumber: 3.0 Consensus size: 45
2038553 TGCGCTAATG
*
2038563 GTGGTCGAGGCAACTGCCTGCACCACGGCCCAGCATGTGCCGATG
1 GTGGTCGAGGCAACTGCCTGCACCACGGCCCAGCATGTGCCGATA
* * * * * * * * *
2038608 GTGTTCAATGTAACTGCCTGCGCCAGGGGCCATCTTGTGCCGATA
1 GTGGTCGAGGCAACTGCCTGCACCACGGCCCAGCATGTGCCGATA
* * * *
2038653 GTGGTCGAGGCAACTGCC-GTCACTAGGGCCCAGCTTGGGCCGAT
1 GTGGTCGAGGCAACTGCCTG-CACCACGGCCCAGCATGTGCCGAT
2038697 GGCGGTCAAG
Statistics
Matches: 69, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
44 1 0.01
45 68 0.99
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (45 bp):
GTGGTCGAGGCAACTGCCTGCACCACGGCCCAGCATGTGCCGATA
Found at i:2039625 original size:26 final size:26
Alignment explanation
Indices: 2039594--2039644 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2039584 GTTGACTTGG
*
2039594 GCATACGGAGTTCATCCCCAATCTAT
1 GCATACAGAGTTCATCCCCAATCTAT
* *
2039620 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAATCTA
2039645 AGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAT
Found at i:2039674 original size:784 final size:785
Alignment explanation
Indices: 2038215--2039678 Score: 1941
Period size: 784 Copynumber: 1.9 Consensus size: 785
2038205 CGTGCCTTGA
*
2038215 CTTAGGCATACGAAGTTCATTCCTGGTCTAACCCCAGACTGGACTGAGGGACCCGAAGCGGGATC
1 CTTAGGCATACGAAGTTCATTCCTGGTCTAACCCCAGACTGGACCGAGGGACCCGAAGCGGGATC
* * * * ** *
2038280 GACAGCACGCAGAGGGGGATCGGGCCGGTCTTCAGCTTATGCATTCTGGCTCTCCGGCTTGCTGA
66 GACAGCACACAAAGGGGGATCGGGCCGATCCTCAGCTTATGCATTCTGGCTCTCCACCTTACTGA
* * * **
2038345 GCGCCCGCACCCTCATTTCATTGGTTGACTTTAGGCGTACGGAGTGCATTCCTGGTCTCGACCAA
131 GCGCCCACACCCTCATTTCATGGGTTGACTTTAGGCATACGGAGTGCATTCCCAGTCTCGACCAA
** * *
2038410 CTAAGAGCCAGAGGCTATCGATGGCATTTGGGGTATCAACCGAGGGGGACCAGCAGCGGGATCCT
196 CTAAGAGCCAGAGGCTATCGACAGCATTTGGGGCAACAACCGAGGGGGACCAGCAGCGGGATCCT
* * ** *
2038475 TGGTCGGCTCACTTATCCTGCCCCCAACGATCAGTTCGATGCTCACACGCTCATTTCGAGGCCGA
261 TGGTCAGCACACGCATCCTACCCCCAACGATCAGTTCGATGCTCACACGCTCATTTCGAGGCCGA
* * * * **
2038540 CTGGGGCTCGGCATGCGCTAATGGTGGTCGAGGCAACTGCCTGCACCACGGCCCAGCATGTGCCG
326 CTGGGGCTCGACATGCGCCAATGGTGGTCGACGCAACCGCCCACACCACGGCCCAGCATGTGCCG
* * * * *
2038605 ATGGTGTTCAATGTAACTGCCTGCGCCAGGGGCCATCTTGTGCCGATAGTGGTCGAGGCAACTGC
391 ATGGTGTTCAATGCAACCGCCTGCACCAGGGACCATCTTGTGCCGATAGTGGTCGAGGCAACCGC
* * * * * * *
2038670 CGTCACTAGGGCCCAGCTTGGGCCGATGGCGGTCAAGACAAGTGCCCGTACCAAAGGGCAGCCTG
456 CGACACCAGGGCCCAACTTGGGCCGATGGCAGTCAAGACAACTGCCAGTACCAAAGGGCAGCCTA
* * * * * * *
2038735 TGTCGATGATGGTCGATGCATCTTGCCTCTCTGGTCGGTTGAGTGCCCGCACGCCCTTTTCGTGG
521 TGCCGATGATGGTCGATGCATCCTGCCTCTCTAGCCGGCTGAGTGCCCACACGCCCATTTCGTGG
* * *
2038800 GTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCGTATAGAGTTCATTCCCAGTCTAAGAT
586 GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
*
2038865 CAAACCAGACCAAGGTTTGCGACAGCAGGACCAGCAGCAGGATCGGCAGTACGCAGGGGGGATCT
651 CAAACCAGACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGGCAGTACGCAGGGGGGATCT
2038930 GGCCGATCCTCGGCTTGCGATTCTGCCTCTCCAGCCGGTTGGATGACCACACACTCGTTTCAGGG
716 GGCCGATCCTCGGCTTGCGATTCTGCCTCTCCAGCCGGTTGGATGACCACACACTCGTTTCAGGG
2038995 GTTGG
781 GTTGG
* * * * * *
2039000 CTTAGGCATACGAAGTTCATTCTTGGTCTAAGCTC-GAATTGGACCGAGGGACCCGCAGTGGGAT
1 CTTAGGCATACGAAGTTCATTCCTGGTCTAACCCCAG-ACTGGACCGAGGGACCCGAAGCGGGAT
* * * * * *
2039064 C-AGTAGCACATAAAGGGGGATCGGGCTGATCCTCGGTTTGTGCATTCTGGCTCTCCACCTTACT
65 CGA-CAGCACACAAAGGGGGATCGGGCCGATCCTCAGCTTATGCATTCTGGCTCTCCACCTTACT
* *
2039128 GAGCGCCCACACGCT-AGTTTCATGGGTTGAC-TTAGGCATACGTAGTGCATTCCCAGTCTCGAC
129 GAGCGCCCACACCCTCA-TTTCATGGGTTGACTTTAGGCATACGGAGTGCATTCCCAGTCTCGAC
* ** *
2039191 CAACTAAGGGCCAGAGGCTATCGACAGTGTTTGGGGCAACAACCGAGGGGGACCAGCAGTGGGAT
193 CAACTAAGAGCCAGAGGCTATCGACAGCATTTGGGGCAACAACCGAGGGGGACCAGCAGCGGGAT
* * * ** * *
2039256 CCTTGGTCAGCACACGCATCCTACCCCCAATGGTCGGTTC-AGTGCTCGTACGCTCGTTTCGGGG
258 CCTTGGTCAGCACACGCATCCTACCCCCAACGATCAGTTCGA-TGCTCACACGCTCATTTC-GAG
** * * * *
2039320 GCCGACTTTGGCTCGACATGTGCCGATGGTGGTCGACGCAACCGCCCATACCACGGCCCAGTATG
321 GCCGACTGGGGCTCGACATGCGCCAATGGTGGTCGACGCAACCGCCCACACCACGGCCCAGCATG
* * * * *
2039385 TGTCGATGGTGTTCAATGCGACCGCTTGCACCAGGGACCATCTTGTGCTGATGGTGGTCGAGGCA
386 TGCCGATGGTGTTCAATGCAACCGCCTGCACCAGGGACCATCTTGTGCCGATAGTGGTCGAGGCA
* * * * * *
2039450 ACCGTCGACACCAGGGCCCAACTTGTGTCGATGGCAGTCGAGGCAACTG-CAGTACCAAAGGGTA
451 ACCGCCGACACCAGGGCCCAACTTGGGCCGATGGCAGTCAAGACAACTGCCAGTACCAAAGGGCA
* *
2039514 GCCTATGCCGATGATGGTCGATGCATCCTGCCTCTCTAGCCGGCTGAGTGCCCATACGCTCATTT
516 GCCTATGCCGATGATGGTCGATGCATCCTGCCTCTCTAGCCGGCTGAGTGCCCACACGCCCATTT
* *
2039579 CGTGGGTTGACTTGGGCATACGGAGTTCATCCCCAATCTATGCATACAGAGTTCATTCCCAGTCT
581 CGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCT
** *
2039644 AAGATCGGACCGGACCAAGGGTTGCGACAGCAGGA
646 AAGATCAAACCAGACCAAGGGTTGCGACAGCAGGA
2039679 TCGATAGCAT
Statistics
Matches: 574, Mismatches: 100, Indels: 11
0.84 0.15 0.02
Matches are distributed among these distances:
783 1 0.00
784 294 0.51
785 279 0.49
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (785 bp):
CTTAGGCATACGAAGTTCATTCCTGGTCTAACCCCAGACTGGACCGAGGGACCCGAAGCGGGATC
GACAGCACACAAAGGGGGATCGGGCCGATCCTCAGCTTATGCATTCTGGCTCTCCACCTTACTGA
GCGCCCACACCCTCATTTCATGGGTTGACTTTAGGCATACGGAGTGCATTCCCAGTCTCGACCAA
CTAAGAGCCAGAGGCTATCGACAGCATTTGGGGCAACAACCGAGGGGGACCAGCAGCGGGATCCT
TGGTCAGCACACGCATCCTACCCCCAACGATCAGTTCGATGCTCACACGCTCATTTCGAGGCCGA
CTGGGGCTCGACATGCGCCAATGGTGGTCGACGCAACCGCCCACACCACGGCCCAGCATGTGCCG
ATGGTGTTCAATGCAACCGCCTGCACCAGGGACCATCTTGTGCCGATAGTGGTCGAGGCAACCGC
CGACACCAGGGCCCAACTTGGGCCGATGGCAGTCAAGACAACTGCCAGTACCAAAGGGCAGCCTA
TGCCGATGATGGTCGATGCATCCTGCCTCTCTAGCCGGCTGAGTGCCCACACGCCCATTTCGTGG
GTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
CAAACCAGACCAAGGGTTGCGACAGCAGGACCAGCAGCAGGATCGGCAGTACGCAGGGGGGATCT
GGCCGATCCTCGGCTTGCGATTCTGCCTCTCCAGCCGGTTGGATGACCACACACTCGTTTCAGGG
GTTGG
Found at i:2039967 original size:26 final size:26
Alignment explanation
Indices: 2039937--2039989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2039927 GTTGACTTAG
* *
2039937 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAATTCATTCCCAGTCTAA
*
2039963 GCATATGAAATTTATTCCCAGTCTAA
1 GCATATGAAATTCATTCCCAGTCTAA
2039989 G
1 G
2039990 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATATGAAATTCATTCCCAGTCTAA
Found at i:2040500 original size:45 final size:45
Alignment explanation
Indices: 2040430--2040588 Score: 183
Period size: 45 Copynumber: 3.5 Consensus size: 45
2040420 CGGGGCTCGA
* *
2040430 CATGTGCCGATGGTGGTCGAGGCAACCGCCCATACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCAG
* * * * * * *
2040475 CATGTGCCGATGGTGTTTGATGCAACTGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCAG
* * * *
2040520 CTTGTGCCTATAGTGGTCGAGGCAACCACCCGTACCAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCAG
* *
2040565 CTTGTGTCGATGGTGGTCGAGGCA
1 CATGTGCCGATGGTGGTCGAGGCA
2040589 GGTGCCCATA
Statistics
Matches: 91, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCAG
Found at i:2040650 original size:13 final size:13
Alignment explanation
Indices: 2040632--2040656 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2040622 ATGGTCGATG
2040632 CATGTGCCATCAC
1 CATGTGCCATCAC
2040645 CATGTGCCATCA
1 CATGTGCCATCA
2040657 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2041925 original size:26 final size:26
Alignment explanation
Indices: 2041887--2041937 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2041877 TTGACTTAAG
2041887 CATACGAAATTCATTCCCAGTCTAAA
1 CATACGAAATTCATTCCCAGTCTAAA
* * *
2041913 CATACGGAGTTCATTCCCCGTCTAA
1 CATACGAAATTCATTCCCAGTCTAA
2041938 GATCCGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACGAAATTCATTCCCAGTCTAAA
Found at i:2043647 original size:45 final size:43
Alignment explanation
Indices: 2043598--2043728 Score: 113
Period size: 45 Copynumber: 2.9 Consensus size: 43
2043588 GCTGCTCGAG
* * *
2043598 GCAACCGTCCGTACCCCGGCCCAGCATGTGCCGATGGTGTTCAAC
1 GCAACCG-CCG-ACCCAGGGCCAGCATGTGCCGATGGTGGTCAAC
* * * *
2043643 GCAACCGCCCG-CACCAGGGGCCATCTTGTGCCAATGGTGGTCAAG
1 GCAACCG-CCGAC-CCA-GGGCCAGCATGTGCCGATGGTGGTCAAC
*
2043688 GCAACCGCAC-ACACCAGGGCCAGCATGTGCCGATGGCGGTC
1 GCAACCGC-CGAC-CCAGGGCCAGCATGTGCCGATGGTGGTC
2043729 TTGATTTTGA
Statistics
Matches: 70, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 24 0.34
45 45 0.64
ACGTcount: A:0.20, C:0.36, G:0.30, T:0.15
Consensus pattern (43 bp):
GCAACCGCCGACCCAGGGCCAGCATGTGCCGATGGTGGTCAAC
Found at i:2044601 original size:26 final size:26
Alignment explanation
Indices: 2044571--2044621 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2044561 GTTTACTTAG
2044571 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
2044597 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATCCCCAGTCTA
2044622 GGATTGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2045061 original size:44 final size:45
Alignment explanation
Indices: 2044929--2045064 Score: 132
Period size: 45 Copynumber: 3.0 Consensus size: 45
2044919 TCGAGGGTCG
* * * *
2044929 ACCAGGGCTCAACATGTGTTGATGGTGGTTC-AGGCAACCGCCCGC
1 ACCAGGGCCCAGCATGTGTCGATGGTGG-TCGAGGCAACCGCCCAC
* * * * * *
2044974 ACCATGGCCCAGCATGTGCCGATAGTGTTCGATGTAACCGCCCAC
1 ACCAGGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCAC
* * *
2045019 ACCAGGGGCCATCTTGTGTCGATGGTGGTCGA-GCAACCGCCCAC
1 ACCAGGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCAC
2045063 AC
1 AC
2045065 TGGAGCCCTA
Statistics
Matches: 72, Mismatches: 18, Indels: 3
0.77 0.19 0.03
Matches are distributed among these distances:
44 15 0.21
45 57 0.79
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.19
Consensus pattern (45 bp):
ACCAGGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCAC
Found at i:2045317 original size:26 final size:26
Alignment explanation
Indices: 2045287--2045339 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2045277 GTTGACTTAG
*
2045287 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2045313 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2045339 G
1 G
2045340 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2045613 original size:45 final size:44
Alignment explanation
Indices: 2045520--2045681 Score: 162
Period size: 45 Copynumber: 3.6 Consensus size: 44
2045510 TAAGCCCCAA
* * * * **
2045520 CAGCATGTGTCGATGCTGGTCGAGGCAACCGCCCGTACCCCGACC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CCAGGGC
* *
2045565 CAGCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGC
* * * * * *
2045610 CAGCTTGTGCCAATGGTGGTCAAGGCAACCGCACACACTAGGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGC
* *
2045654 CAGCATGTGTCGATGGCGGTCGAGGCAA
1 CAGCATGTGCCGATGGTGGTCGAGGCAA
2045682 GTGCCCATAC
Statistics
Matches: 95, Mismatches: 21, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
44 29 0.31
45 66 0.69
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.16
Consensus pattern (44 bp):
CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGC
Found at i:2046645 original size:26 final size:25
Alignment explanation
Indices: 2046609--2046660 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
2046599 GTTGACTTAG
2046609 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCT-AGTCTAA
*
2046635 GCATACGGAGTTTATTCTAGTCTAA
1 GCATACGGAGTTCATTCTAGTCTAA
2046660 G
1 G
2046661 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATACGGAGTTCATTCTAGTCTAA
Found at i:2047034 original size:45 final size:45
Alignment explanation
Indices: 2046978--2047137 Score: 124
Period size: 45 Copynumber: 3.6 Consensus size: 45
2046968 CGAGGCTCGA
* *
2046978 CATGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCCAG
1 CATGTGTCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAG
* * * * ** * * *
2047023 CATGTTTCGATGGTGTTCGATGTAACCGGCCACACCCGGGGCCAT
1 CATGTGTCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAG
* * ** * * *
2047068 CTTGTGTCGATGGTGGTTGAGGCAACCGTCCGCACCAGAGCTCAG
1 CATGTGTCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAG
* *
2047113 CTTGTG-CTGATAGTGGTCGAGGCAA
1 CATGTGTC-GATGGTGGTCGAGGCAA
2047138 GTGCCCGTAC
Statistics
Matches: 88, Mismatches: 26, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
44 1 0.01
45 87 0.99
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (45 bp):
CATGTGTCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAG
Found at i:2047915 original size:26 final size:26
Alignment explanation
Indices: 2047863--2047915 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2047853 GTTGACTTAG
** *
2047863 GCATACGGAGTTCATTCTTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2047889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2047915 G
1 G
2047916 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2050477 original size:26 final size:26
Alignment explanation
Indices: 2050448--2050500 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2050438 GTTCACTTAG
* *
2050448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2050474 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2050500 G
1 G
2050501 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2051017 original size:45 final size:45
Alignment explanation
Indices: 2050942--2051099 Score: 190
Period size: 45 Copynumber: 3.5 Consensus size: 45
2050932 GGGCTTGGTA
* * * * *
2050942 TGTGCCAATGATGGTTGAGGCAACCGCCCGCACCATGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* * * * * *
2050987 TGTCCCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* *
2051032 TGTGCCGATAGTGGTCGAGGCAACCGCTCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
*
2051077 TGTGCTGATGGTGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2051100 GTGCCCGTAC
Statistics
Matches: 92, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 92 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
Found at i:2053505 original size:169 final size:169
Alignment explanation
Indices: 2053226--2053559 Score: 659
Period size: 169 Copynumber: 2.0 Consensus size: 169
2053216 ACCATTGAGG
*
2053226 TAATACCCCTTAACGACTATGAGTTTGTGATTAGGTTGGATTTCCTTGTTTGGATTAAAGCCCTC
1 TAATACCCCTTAACGACTATGAGTTTGTGATCAGGTTGGATTTCCTTGTTTGGATTAAAGCCCTC
2053291 CTTGTGCCTTTTCTCGATTGTGTTTGCATCTTGGATGCACGGTGCCAATGCCTAGTGCCATTGAG
66 CTTGTGCCTTTTCTCGATTGTGTTTGCATCTTGGATGCACGGTGCCAATGCCTAGTGCCATTGAG
2053356 GAGAGGGTCTGGAGTTAGGTCACGGGTGGTGTCAGTCGT
131 GAGAGGGTCTGGAGTTAGGTCACGGGTGGTGTCAGTCGT
2053395 TAATACCCCTTAACGACTATGAGTTTGTGATCAGGTTGGATTTCCTTGTTTGGATTAAAGCCCTC
1 TAATACCCCTTAACGACTATGAGTTTGTGATCAGGTTGGATTTCCTTGTTTGGATTAAAGCCCTC
2053460 CTTGTGCCTTTTCTCGATTGTGTTTGCATCTTGGATGCACGGTGCCAATGCCTAGTGCCATTGAG
66 CTTGTGCCTTTTCTCGATTGTGTTTGCATCTTGGATGCACGGTGCCAATGCCTAGTGCCATTGAG
2053525 GAGAGGGTCTGGAGTTAGGTCACGGGTGGTGTCAG
131 GAGAGGGTCTGGAGTTAGGTCACGGGTGGTGTCAG
2053560 CCATCCAATT
Statistics
Matches: 164, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 164 1.00
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.34
Consensus pattern (169 bp):
TAATACCCCTTAACGACTATGAGTTTGTGATCAGGTTGGATTTCCTTGTTTGGATTAAAGCCCTC
CTTGTGCCTTTTCTCGATTGTGTTTGCATCTTGGATGCACGGTGCCAATGCCTAGTGCCATTGAG
GAGAGGGTCTGGAGTTAGGTCACGGGTGGTGTCAGTCGT
Found at i:2058865 original size:45 final size:45
Alignment explanation
Indices: 2058720--2058877 Score: 138
Period size: 45 Copynumber: 3.5 Consensus size: 45
2058710 AGGCTCGGCA
* * * * *
2058720 TGTGCCGATGGTGGTCAAGACAATCGCCCGCACCACGGCCCAACA
1 TGTGCCGATGGTGGTCAAGGCAACCGCACGCACCAGGGCCCAACT
* * * *
2058765 TGTGCCGATGGTGATCGATGCAACCGCACGCACCAGAGG-CCATCT
1 TGTGCCGATGGTGGTCAAGGCAACCGCACGCACCAG-GGCCCAACT
* * * * * * *
2058810 TGTACAGATGGTGGTCGAGGCAACCGCTCACACTAGGGCCCAGCT
1 TGTGCCGATGGTGGTCAAGGCAACCGCACGCACCAGGGCCCAACT
* *
2058855 TATGCCGATGGAGGTCAAGGCAA
1 TGTGCCGATGGTGGTCAAGGCAA
2058878 GTGCCCATGT
Statistics
Matches: 89, Mismatches: 22, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
44 2 0.02
45 85 0.96
46 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.30, T:0.16
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCAAGGCAACCGCACGCACCAGGGCCCAACT
Found at i:2066103 original size:26 final size:26
Alignment explanation
Indices: 2066074--2066126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2066064 ATTGACTTAG
2066074 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
*
2066100 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
2066126 G
1 G
2066127 ATCGGATCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:2066626 original size:45 final size:45
Alignment explanation
Indices: 2066575--2066782 Score: 177
Period size: 45 Copynumber: 4.6 Consensus size: 45
2066565 GACCGAGGCT
* *
2066575 CAGCATGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCATGGCC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC
* * * * * *
2066620 CAGCATGTGCCGATGGTGTTTGATGCAATCGCCCGTACCAGGGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC
* * ** * * * * *
2066665 CACCTTGTGCTAATGGTGGTCGAGGTAATCTCCTGAACCAAGGG-C
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCC
* * * * *
2066710 CGGCATGTGCCGATGGTGATCAAGGCAACTGCCCACACCAGGGCC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC
*
2066755 CAGC-TGGTGCCGATGGCGGTCGAGGCAA
1 CAGCAT-GTGCCGATGGTGGTCGAGGCAA
2066783 GTGCTCGTAC
Statistics
Matches: 123, Mismatches: 37, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
44 5 0.04
45 114 0.93
46 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (45 bp):
CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC
Found at i:2066820 original size:135 final size:135
Alignment explanation
Indices: 2066577--2066822 Score: 302
Period size: 135 Copynumber: 1.8 Consensus size: 135
2066567 CCGAGGCTCA
* * * * * *
2066577 GCATGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTTG
1 GCATGTGCCGATGGTGATCAAGGCAACCGCCCACACCAGGGCCCAGCATGTGCCGATGGCGGTCG
* * * * *
2066642 ATGCAATCGCCCGTACCAGGGGCCACCTTGTGCTAATGGTGGTCGAGGTAATCTCCTGAACCAAG
66 AGGCAATCGCCCGTACCAAGGGCCACCTTGTCCCAATGATGGTCGAGGTAATCTCCTGAACCAAG
2066707 GGCCG
131 GGCCG
*
2066712 GCATGTGCCGATGGTGATCAAGGCAACTGCCCACACCAGGGCCCAGC-TGGTGCCGATGGCGGTC
1 GCATGTGCCGATGGTGATCAAGGCAACCGCCCACACCAGGGCCCAGCAT-GTGCCGATGGCGGTC
* *
2066776 GAGGCAAGT-GCTCGTACCAAAGGG-CAGCC-TGTCCCGATGATGGTCGA
65 GAGGCAA-TCGCCCGTACC-AAGGGCCA-CCTTGTCCCAATGATGGTCGA
2066823 AGCATGTGCC
Statistics
Matches: 93, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
134 1 0.01
135 85 0.91
136 7 0.08
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (135 bp):
GCATGTGCCGATGGTGATCAAGGCAACCGCCCACACCAGGGCCCAGCATGTGCCGATGGCGGTCG
AGGCAATCGCCCGTACCAAGGGCCACCTTGTCCCAATGATGGTCGAGGTAATCTCCTGAACCAAG
GGCCG
Found at i:2069291 original size:25 final size:26
Alignment explanation
Indices: 2069263--2069314 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
2069253 GTTGACTTAG
* *
2069263 GCATACGGAGTTCA-TCCCAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2069288 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2069314 G
1 G
2069315 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2069642 original size:26 final size:26
Alignment explanation
Indices: 2069605--2069657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2069595 GTTAACTTAG
2069605 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2069631 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2069657 G
1 G
2069658 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2077711 original size:45 final size:44
Alignment explanation
Indices: 2077640--2077885 Score: 181
Period size: 45 Copynumber: 5.5 Consensus size: 44
2077630 CAAGGCTCAG
* * *
2077640 GCATGTTCCGATGGTGGTCGACGCAACCGCCCGCACCATGGTCCA
1 GCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCA-GGGCCA
* *
2077685 GCGTGTGCCGATGGTGTTCGAAGCAACCGCCCGCACCAGAGGCCA
1 GCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAG-GGCCA
* * ** * ***
2077730 TCTTGTGCCGATGGTGGTC-AAGGCAATTGCCCACACCAAGGGGTG
1 GCATGTGCCGATGGTGGTCGAA-GCAACCGCCCGCACC-AGGGCCA
* *
2077775 GCATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAGGG-CCA
* * * * * ** * *
2077820 ACTTTTGCTGATGGTGGTCGAGGCAAGTGCCCGTACCAAAGGG-TA
1 GCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACC--AGGGCCA
* *
2077865 GCCTGTGCCGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
2077886 TGCATGTGCC
Statistics
Matches: 156, Mismatches: 38, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
44 7 0.04
45 142 0.91
46 3 0.02
47 4 0.03
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAGGGCCA
Found at i:2077748 original size:90 final size:90
Alignment explanation
Indices: 2077647--2077845 Score: 238
Period size: 90 Copynumber: 2.2 Consensus size: 90
2077637 CAGGCATGTT
* * * * * *
2077647 CCGATGGTGGTCGACGCAACCGCCCGCACCATGGTCCAGCGTGTGCCGATGGTGTTCGAAGCAAC
1 CCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGCCGATGGTGATCGAAGCAAC
*
2077712 CGCCCGCACCAGAGG-CCATCTTGTG
66 CGCCCGCACCAG-GGCCCAACTTGTG
* ** *** *
2077737 CCGATGGTGGTCAAGGCAATTGCCCACACCAAGGGGTGGCATGTGCCGATGGTGATCGAGGCAAC
1 CCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGCCGATGGTGATCGAAGCAAC
*
2077802 CGCCCGCACCAGGGCCCAACTTTTG
66 CGCCCGCACCAGGGCCCAACTTGTG
*
2077827 CTGATGGTGGTCGAGGCAA
1 CCGATGGTGGTCGAGGCAA
2077846 GTGCCCGTAC
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 2 0.02
90 89 0.98
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.17
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAACCGCCCACACCAAGGGCCAGCATGTGCCGATGGTGATCGAAGCAAC
CGCCCGCACCAGGGCCCAACTTGTG
Found at i:2077851 original size:90 final size:90
Alignment explanation
Indices: 2077688--2077877 Score: 256
Period size: 90 Copynumber: 2.1 Consensus size: 90
2077678 TGGTCCAGCG
* *
2077688 TGTGCCGATGGTGTTCGAAGCAACCGCCCGCACCAGAGGCCATCTTGTGCCGATGGTGGTCAAGG
1 TGTGCCGATGGTGATCGAAGCAACCGCCCGCACCAGAGGCCAACTTGTGCCGATGGTGGTCAAGG
* * *
2077753 CAATTGCCCACACCAAGGGGTGGCA
66 CAAGTGCCCACACCAAAGGGTAGCA
* * * *
2077778 TGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAG-GGCCCAACTTTTGCTGATGGTGGTCGAG
1 TGTGCCGATGGTGATCGAAGCAACCGCCCGCACCAGAGG-CCAACTTGTGCCGATGGTGGTCAAG
** *
2077842 GCAAGTGCCCGTACCAAAGGGTAGCC
65 GCAAGTGCCCACACCAAAGGGTAGCA
2077868 TGTGCCGATG
1 TGTGCCGATG
2077878 ATGGTCGATG
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 2 0.02
90 85 0.98
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGGTGATCGAAGCAACCGCCCGCACCAGAGGCCAACTTGTGCCGATGGTGGTCAAGG
CAAGTGCCCACACCAAAGGGTAGCA
Found at i:2077883 original size:135 final size:135
Alignment explanation
Indices: 2077639--2077883 Score: 310
Period size: 135 Copynumber: 1.8 Consensus size: 135
2077629 CCAAGGCTCA
* * * * * *
2077639 GGCATGTTCCGATGGTGGTCGACGCAACCGCCCGCACCATGGTCCAGCGTGTGCCGATGGTGTTC
1 GGCATGTGCCGATGGTGATCGACGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGGTC
* * * *
2077704 GAAGCAACCGCCCGCACCAGAGGCCATCTTGTGCCGATGGTGGTCAAGGCAATTGCCCACACCAA
66 GAAGCAACCGCCCGCACCAAAGGCCAGCCTGTGCCGATGATGGTCAAGGCAATTGCCCACACCAA
2077769 GGGGT
131 GGGGT
* * * *
2077774 GGCATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAACTTTTGCTGATGGTGGTC
1 GGCATGTGCCGATGGTGATCGACGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGGTC
* ** * **
2077839 GAGGCAAGTGCCCGTACCAAAGGGTAGCCTGTGCCGATGATGGTC
66 GAAGCAACCGCCCGCACCAAAGGCCAGCCTGTGCCGATGATGGTC
2077884 GATGCATGTG
Statistics
Matches: 90, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
135 90 1.00
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.18
Consensus pattern (135 bp):
GGCATGTGCCGATGGTGATCGACGCAACCGCCCGCACCAGGGCCCAACGTGTGCCGATGGTGGTC
GAAGCAACCGCCCGCACCAAAGGCCAGCCTGTGCCGATGATGGTCAAGGCAATTGCCCACACCAA
GGGGT
Found at i:2078817 original size:26 final size:26
Alignment explanation
Indices: 2078777--2078832 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2078767 TGGGTTGACT
*
2078777 TAAGCATACGGAGTTCATCCCCAATC
1 TAAGCATACGAAGTTCATCCCCAATC
* *
2078803 TAAGCATATGAAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATCCCCAATC
2078829 TAAG
1 TAAG
2078833 ATTGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATCCCCAATC
Found at i:2079008 original size:25 final size:25
Alignment explanation
Indices: 2078974--2079051 Score: 111
Period size: 26 Copynumber: 3.0 Consensus size: 25
2078964 GGTAACTTAG
2078974 GCATATGGAGTTCATTCCAGTCTAA
1 GCATATGGAGTTCATTCCAGTCTAA
*
2078999 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCAT-TCCAGTCTAA
**
2079025 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCC-AGTCTAA
2079051 G
1 G
2079052 ATCGGACCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
25 17 0.36
26 30 0.64
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (25 bp):
GCATATGGAGTTCATTCCAGTCTAA
Found at i:2079102 original size:40 final size:40
Alignment explanation
Indices: 2079047--2079126 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
2079037 CATTCCTAGT
* *
2079047 CTAAGATCGGACCGACTGAGGTTTACGGTAGGAAGACCAG
1 CTAAGATCGGACCGACTGAGGGTTACGGTAGCAAGACCAG
*
2079087 CTAAGTTCGGACCGACTGAGGGTTACGGTAGCAAGACCAG
1 CTAAGATCGGACCGACTGAGGGTTACGGTAGCAAGACCAG
2079127 TAGCAGGATC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.29, C:0.21, G:0.33, T:0.17
Consensus pattern (40 bp):
CTAAGATCGGACCGACTGAGGGTTACGGTAGCAAGACCAG
Found at i:2079227 original size:26 final size:26
Alignment explanation
Indices: 2079198--2079250 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2079188 GTTGGCTTGG
2079198 GCATACGGAGTTCA-TCCTTAGTCTAA
1 GCATACGGAGTTCATTCC-TAGTCTAA
2079224 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
2079250 G
1 G
2079251 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:2079620 original size:25 final size:26
Alignment explanation
Indices: 2079553--2079630 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2079543 GTTGACTTAG
2079553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2079579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2079605 GCATAC-GAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2079630 G
1 G
2079631 ATCAGACCGA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 19 0.37
26 32 0.63
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2079769 original size:26 final size:26
Alignment explanation
Indices: 2079740--2079792 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2079730 GTTGACTTAG
*
2079740 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
2079766 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
2079792 G
1 G
2079793 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:2079967 original size:26 final size:25
Alignment explanation
Indices: 2079937--2080015 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
2079927 GTTGACTTAG
2079937 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
*
2079963 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
2079989 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATA-CGAGTTCATTCCCAGTCTAA
2080015 G
1 G
2080016 ATCAGACCTG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
26 47 0.96
27 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:2080603 original size:45 final size:45
Alignment explanation
Indices: 2080554--2080660 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
2080544 TCTTGTGACG
*
2080554 ATGGTGGTCGAAGCAATCACCCGCACCAAGGG-CCAGCATGTGCCA
1 ATGGTGGTCGAGGCAATCACCCGCA-CAAGGGCCCAGCATGTGCCA
* * * * *
2080599 ATGGTGATCGAGGCAACCGCCCGCACTAGGGCCCAGCTTGTGCCA
1 ATGGTGGTCGAGGCAATCACCCGCACAAGGGCCCAGCATGTGCCA
*
2080644 ATGGCGGTCGAGGCAAT
1 ATGGTGGTCGAGGCAAT
2080661 TGCCCATACC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 5 0.10
45 47 0.90
ACGTcount: A:0.23, C:0.30, G:0.32, T:0.15
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAATCACCCGCACAAGGGCCCAGCATGTGCCA
Found at i:2080639 original size:90 final size:90
Alignment explanation
Indices: 2080497--2080660 Score: 197
Period size: 90 Copynumber: 1.8 Consensus size: 90
2080487 CACTACGACT
* * * * * * * *
2080497 CAGCATGTGTCGATGTTGTTCGATGCAACCACCCGCACCTGGCACCATCTTGTGACGATGGTGGT
1 CAGCATGTGCCAATGGTGATCGAGGCAACCACCCGCACCTGGCACCAGCTTGTGACAATGGCGGT
2080562 CGAAGCAATCACCCGCACCAAGGGC
66 CGAAGCAATCACCCGCACCAAGGGC
* *
2080587 CAGCATGTGCCAATGGTGATCGAGGCAACCGCCCGCA-CTAGGGC-CCAGCTTGTGCCAATGGCG
1 CAGCATGTGCCAATGGTGATCGAGGCAACCACCCGCACCT--GGCACCAGCTTGTGACAATGGCG
*
2080650 GTCGAGGCAAT
64 GTCGAAGCAAT
2080661 TGCCCATACC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
89 2 0.03
90 56 0.92
91 3 0.05
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (90 bp):
CAGCATGTGCCAATGGTGATCGAGGCAACCACCCGCACCTGGCACCAGCTTGTGACAATGGCGGT
CGAAGCAATCACCCGCACCAAGGGC
Found at i:2081629 original size:26 final size:26
Alignment explanation
Indices: 2081600--2081652 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2081590 GTTGACTTAG
*
2081600 GCATATGAAGCTCA-TCCCTAGTCTAA
1 GCATACGAAGCTCATTCCC-AGTCTAA
*
2081626 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCATTCCCAGTCTAA
2081652 G
1 G
2081653 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGCTCATTCCCAGTCTAA
Found at i:2082384 original size:26 final size:26
Alignment explanation
Indices: 2082355--2082407 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2082345 GTTGACTTAG
2082355 GCATATGGAGCTCATCCCCAATCTAA
1 GCATATGGAGCTCATCCCCAATCTAA
* * *
2082381 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGCTCATCCCCAATCTAA
2082407 G
1 G
2082408 ATCGGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATATGGAGCTCATCCCCAATCTAA
Found at i:2083301 original size:45 final size:45
Alignment explanation
Indices: 2083200--2083315 Score: 146
Period size: 45 Copynumber: 2.6 Consensus size: 45
2083190 TCGAGGCTCG
*
2083200 GCATGTACCGATGGTGGTCGAGGCAACCGTCCGCACCATGGCCTA
1 GCATGTACCGATGGTGGTCGAGGCAACCGTCCGCACCAGGGCCTA
* * *
2083245 GCATGTGCCGATGGTGTTCGACGCAACC-TCCTGCACCAGGGGCC-A
1 GCATGTACCGATGGTGGTCGAGGCAACCGTCC-GCACCA-GGGCCTA
* *
2083290 TCTTGTACCGATGGTGGTCGAGGCAA
1 GCATGTACCGATGGTGGTCGAGGCAA
2083316 TCACTCACAC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
44 3 0.05
45 53 0.88
46 4 0.07
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (45 bp):
GCATGTACCGATGGTGGTCGAGGCAACCGTCCGCACCAGGGCCTA
Found at i:2083346 original size:45 final size:44
Alignment explanation
Indices: 2083200--2083356 Score: 135
Period size: 45 Copynumber: 3.5 Consensus size: 44
2083190 TCGAGGCTCG
* *
2083200 GCATGTACCGATGGTGGTCGAGGCAACCGTCC-GCACCA-TGGCCTA
1 GCATGTGCCGATGGTGGTCGAGGCAA-C-TCCTGCACCAGGGGCC-A
* *
2083245 GCATGTGCCGATGGTGTTCGACGCAACCTCCTGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAA-CTCCTGCACCAGGGGCCA
* * * *
2083290 TCTTGTACCGATGGTGGTCGAGGCAA-TCACT-CACACTAGGGGTCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTC-CTGCAC-C-AGGGGCCA
2083335 GCATGTGCCGATGG-GGATCGAG
1 GCATGTGCCGATGGTGG-TCGAG
2083357 TCGATCCCCG
Statistics
Matches: 93, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 8 0.09
45 76 0.82
46 4 0.04
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGGCAACTCCTGCACCAGGGGCCA
Found at i:2083460 original size:26 final size:26
Alignment explanation
Indices: 2083431--2083483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2083421 GTTGACTTAG
2083431 GCATATGGAGCTCATCCCCAGTCTAA
1 GCATATGGAGCTCATCCCCAGTCTAA
* *
2083457 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGCTCATCCCCAGTCTAA
2083483 G
1 G
2083484 ATCGGATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATATGGAGCTCATCCCCAGTCTAA
Found at i:2084320 original size:45 final size:44
Alignment explanation
Indices: 2084247--2084444 Score: 166
Period size: 45 Copynumber: 4.4 Consensus size: 44
2084237 CGACATATGT
** * *
2084247 CGATGGTGGTCGAGGCAACCATCTGCACCATGGCCCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCAGCATGTAC
* * *
2084292 CGATGGTGTTCGATGCAACCGCCCGCACCAGGCGCCATG-TTGTGA-
1 CGATGGTGGTCGAGGCAACCGCCCGCACCAGGC-CCA-GCATGT-AC
* * ** *
2084337 CGATGGTGGTCGAAGCAATCGCCCGCACCAAGGGTCGGCATGTAC
1 CGATGGTGGTCGAGGCAACCGCCCGCACC-AGGCCCAGCATGTAC
* * * *
2084382 CGATGGTGATCGAGGCAATCGCCCACACCAGGGCCCAGCTTGTAC
1 CGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCAGCATGTAC
* *
2084427 CGATGGCGGTCAAGGCAA
1 CGATGGTGGTCGAGGCAA
2084445 GTGCCCGTAC
Statistics
Matches: 122, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
44 6 0.05
45 112 0.92
46 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (44 bp):
CGATGGTGGTCGAGGCAACCGCCCGCACCAGGCCCAGCATGTAC
Found at i:2084475 original size:90 final size:90
Alignment explanation
Indices: 2084285--2084476 Score: 198
Period size: 90 Copynumber: 2.1 Consensus size: 90
2084275 CATGGCCCAG
* * * *
2084285 CATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGCGCCATGTTGTGACGATGGTGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGCGCCATGTTGTGACGATGGCGGTCGA
**
2084350 AGCAATCGCCCGCACCAAGGGTCGG
66 AGCAATCGCCCGCACCAAGGGTCAA
* *
2084375 CATGTACCGATGGTGATCGAGGCAATCGCCCACACCAGG-GCCCA-GCTTGT-ACCGATGGCGGT
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGCG-CCATG-TTGTGA-CGATGGCGGT
*
2084437 C-AAGGCAAGT-GCCCGTACCAAAGGG-CAA
63 CGAA-GCAA-TCGCCCGCACC-AAGGGTCAA
*
2084465 CCTGTGCCGATG
1 CATGTGCCGATG
2084477 ATGGTCGATG
Statistics
Matches: 85, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
89 5 0.06
90 74 0.87
91 6 0.07
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (90 bp):
CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGCGCCATGTTGTGACGATGGCGGTCGA
AGCAATCGCCCGCACCAAGGGTCAA
Found at i:2085415 original size:26 final size:26
Alignment explanation
Indices: 2085385--2085437 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2085375 GTTGACTTAG
2085385 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
*
2085411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2085437 G
1 G
2085438 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2085615 original size:45 final size:45
Alignment explanation
Indices: 2085555--2085764 Score: 161
Period size: 45 Copynumber: 4.7 Consensus size: 45
2085545 AGGCCGACCG
* * *
2085555 GGGCTCAGAATGTGCCGATGGTGGTCGAGGCACCCGCCCACACCA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
* *** * * * *
2085600 TGGCCCAGCATGTGCCGATGGCATTCAATGCAATCGCCCGCACCA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
* * * * * * *
2085645 GGGGCCATCTTATGCCGATGGTGGTCGAAGCAATCACCCACACCAA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACC-A
* * * * *
2085691 GGG-CCGGCATGTGCCGATGGTGATCAAGGTAACCGGCCACACCA
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
* * * *
2085735 GGGCCTAGCTTGTGCTGATGGCGGTCGAGG
1 GGGCCCAGCATGTGCCGATGGTGGTCGAGG
2085765 TAAGAGCCCG
Statistics
Matches: 122, Mismatches: 41, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
44 4 0.03
45 114 0.93
46 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (45 bp):
GGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
Found at i:2085755 original size:90 final size:90
Alignment explanation
Indices: 2085565--2085762 Score: 211
Period size: 90 Copynumber: 2.2 Consensus size: 90
2085555 GGGCTCAGAA
* * * * *
2085565 TGTGCCGATGGTGGTCGAGGCACCCGCCCACACCATGGCCCAGCATGTGCCGATGGCATTCAATG
1 TGTGCCGATGGTGGTCGAAGCAACCACCCACACCAAGGCCCAGCATGTGCCGATGGCATTCAAGG
* * *
2085630 CAATCGCCCGCACCAGGGGCCATCT
66 CAACCGCCCACACCAGGGGCCAGCT
* * * * *
2085655 TATGCCGATGGTGGTCGAAGCAATCACCCACACCAAGGGCCGGCATGTGCCGATGGTGA-TCAAG
1 TGTGCCGATGGTGGTCGAAGCAACCACCCACACCAAGGCCCAGCATGTGCCGATGG-CATTCAAG
* *
2085719 GTAACCGGCCACACCA-GGGCCTAGCT
65 GCAACCGCCCACACCAGGGGCC-AGCT
* *
2085745 TGTGCTGATGGCGGTCGA
1 TGTGCCGATGGTGGTCGA
2085763 GGTAAGAGCC
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
89 5 0.06
90 82 0.93
91 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAAGCAACCACCCACACCAAGGCCCAGCATGTGCCGATGGCATTCAAGG
CAACCGCCCACACCAGGGGCCAGCT
Found at i:2087045 original size:45 final size:44
Alignment explanation
Indices: 2086975--2087136 Score: 162
Period size: 45 Copynumber: 3.6 Consensus size: 44
2086965 TGGGGCTCGC
* * * * *
2086975 CATGTGCCAAAGGTGGTCGAGGCAACCGTCCGCACCATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCG-CCACACCAAGGGCCAG
* * * * *
2087020 CATGTGCTGATGGTGTTCGATGCAACCGCCTACACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCC-ACACCAAGGGCCAG
* * *
2087065 CTTGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAAGGGCCGG
1 CATGTGCCGATGGTGGTCGAGGCAACCG-CCACACCAAGGGCCAG
* *
2087110 CATGTGCCAATGGTGATCGAGGCAACC
1 CATGTGCCGATGGTGGTCGAGGCAACC
2087137 ACCTGCACTA
Statistics
Matches: 94, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
44 2 0.02
45 90 0.96
46 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.17
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCACACCAAGGGCCAG
Found at i:2087135 original size:90 final size:90
Alignment explanation
Indices: 2086977--2087192 Score: 227
Period size: 90 Copynumber: 2.4 Consensus size: 90
2086967 GGGCTCGCCA
* * * * * ** * *
2086977 TGTGCCAAAGGTGGTCGAGGCAACCGTCCGCACCATGGCCCAGCATGTGCTGATGGTGTTCGATG
1 TGTGCCGAAGGTGGTCGAGGCAATCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGG
* ** *
2087042 CAACCGCCTACACCAGGGGCCATCT
66 CAACCACCTACACCAGGACCCAGCT
* * *
2087067 TGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAAGGGCCGGCATGTGCCAATGGTGATCGAGG
1 TGTGCCGAAGGTGGTCGAGGCAATCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGG
* *
2087132 CAACCACCTGCACTAGGACCCAGCT
66 CAACCACCTACACCAGGACCCAGCT
* * *
2087157 TGTGTCGAAGGTGATCGAGGCAAGT-GCCCATACCAA
1 TGTGCCGAAGGTGGTCGAGGCAA-TCGCCCACACCAA
2087193 AAGGTAGCCT
Statistics
Matches: 103, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 102 0.99
91 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.18
Consensus pattern (90 bp):
TGTGCCGAAGGTGGTCGAGGCAATCGCCCACACCAAGGCCCAGCATGTGCCAATGGTGATCGAGG
CAACCACCTACACCAGGACCCAGCT
Found at i:2088151 original size:26 final size:26
Alignment explanation
Indices: 2088122--2088174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2088112 GTTGACTTAG
*
2088122 GCATACGAAGTTTATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2088148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2088174 G
1 G
2088175 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2088994 original size:45 final size:44
Alignment explanation
Indices: 2088938--2089095 Score: 120
Period size: 45 Copynumber: 3.5 Consensus size: 44
2088928 TCGGGGCTTG
* * *
2088938 GCATATGCCGATGGTGCTCGAGGCAACCGCCCGTACCACGGCCCA
1 GCATGTGCCGATGGTGCTCGAGGCAACCGCCCCTACCA-GGCACA
* * * * * *
2088983 GCATGTGCCGATGGTGTTCGATGTAATCGCCCCTACCAGGGACG
1 GCATGTGCCGATGGTGCTCGAGGCAACCGCCCCTACCAGGCACA
* * * *
2089027 GTCTTGTGCCGATGGTGGTCGAGGCAACTGCCCAC-ACCAGGTCTCA
1 G-CATGTGCCGATGGTGCTCGAGGCAACCGCCC-CTACCAGG-CACA
* * * *
2089073 GCTTGTGTCGATGGCGGTCGAGG
1 GCATGTGCCGATGGTGCTCGAGG
2089096 TAAGTGCCCG
Statistics
Matches: 90, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
44 4 0.04
45 83 0.92
46 3 0.03
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (44 bp):
GCATGTGCCGATGGTGCTCGAGGCAACCGCCCCTACCAGGCACA
Found at i:2091003 original size:45 final size:45
Alignment explanation
Indices: 2090858--2091015 Score: 145
Period size: 45 Copynumber: 3.5 Consensus size: 45
2090848 AGGCTCGACA
* * * * * * *
2090858 TGTGCCGATGGTGGTCGAGGAAACCGCCCGCACCACGACGCAGCA
1 TGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCT
* * * ** * *
2090903 TGTGCTGATGGTGTTCGATGCAACCGCCTACAGTAGGGGCCATCT
1 TGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCT
* *
2090948 TGTGCCGATGGTGGTCGAGGCAACCGCCCACTCCAGGGCCCAGCT
1 TGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCT
* **
2090993 TATGCTGATGGCAGTCGAGGCAA
1 TGTGCTGATGGTGGTCGAGGCAA
2091016 GTGCCCGTAC
Statistics
Matches: 86, Mismatches: 27, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 86 1.00
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (45 bp):
TGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCT
Found at i:2092622 original size:26 final size:26
Alignment explanation
Indices: 2092592--2092644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2092582 GTTGACTTTG
* *
2092592 GCATACAAAGTTCATTCCCAATCTAA
1 GCATACAAACTTCATCCCCAATCTAA
2092618 GCATACAAACTTCATCCCCAATCTAA
1 GCATACAAACTTCATCCCCAATCTAA
2092644 G
1 G
2092645 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.30, G:0.08, T:0.25
Consensus pattern (26 bp):
GCATACAAACTTCATCCCCAATCTAA
Found at i:2093135 original size:45 final size:44
Alignment explanation
Indices: 2093084--2093240 Score: 163
Period size: 45 Copynumber: 3.5 Consensus size: 44
2093074 CCAGGGCTCG
2093084 ACATGTGCCGATGGTGGTCGAGGCAACCG-CTCGCACCACGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGTC-CGCACCA-GGCCCA
* * * *
2093129 ACATGTGCCGATGGTGTTCGATGCAACCGTCCACACCAGAGGCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCAG-GCCCA
* * * * *
2093174 TCTTGTGCTGATGGTGGTCGAGGCAACTGTCCGCACCAGGGCCTA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCA-GGCCCA
* * *
2093219 GCTTGTGCCGATGGCGGTCGAG
1 ACATGTGCCGATGGTGGTCGAG
2093241 AAAAGTGCCC
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
44 1 0.01
45 90 0.97
46 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19
Consensus pattern (44 bp):
ACATGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCAGGCCCA
Found at i:2094138 original size:26 final size:26
Alignment explanation
Indices: 2094102--2094154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2094092 GTTGACTTAG
*
2094102 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
2094128 GCATACAGAGTTCATGCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2094154 G
1 G
2094155 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2094291 original size:196 final size:196
Alignment explanation
Indices: 2093948--2094312 Score: 468
Period size: 196 Copynumber: 1.9 Consensus size: 196
2093938 ATAGTGCGCT
* * * * ***
2093948 CCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGACCCGTCGTGGGATCGATAGCAT
1 CCCAGTCTAAGATCGAACCGGATCGAGGGTTACGATAGCAGGACCAGTCCCAGGATCGATAGCAT
* * * *
2094013 GCAGAGGGGACCAGGTCGATCCTCAGCTTACGCATCCTACCTCTCTGGCAGGTTGAGCGCCCGCA
66 GCAGAGGGGACCAGGTCGATCCCCAGCTTACGCATCCTACCTCTCCGACAGGCTGAGCGCCCGCA
* *
2094078 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
131 CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
2094143 G
196 G
*
2094144 CCCAGTCTAAGATCGAATCGGATCGAGGGTTACGATAGCAGGACCAG-CACCAGGATCGATAGCA
1 CCCAGTCTAAGATCGAACCGGATCGAGGGTTACGATAGCAGGACCAGTC-CCAGGATCGATAGCA
* * * * * *
2094208 CGTG-AG-GGGGATCGGGTCGATCCCCGGCTTACGCATTCTGCCTCTCCGACTGGCTGAGC-CCC
65 --TGCAGAGGGGACCAGGTCGATCCCCAGCTTACGCATCCTACCTCTCCGACAGGCTGAGCGCCC
* *
2094270 TGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCAT
128 -GCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCAT
2094313 TCCATGTCTA
Statistics
Matches: 143, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
195 4 0.03
196 135 0.94
197 2 0.01
198 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (196 bp):
CCCAGTCTAAGATCGAACCGGATCGAGGGTTACGATAGCAGGACCAGTCCCAGGATCGATAGCAT
GCAGAGGGGACCAGGTCGATCCCCAGCTTACGCATCCTACCTCTCCGACAGGCTGAGCGCCCGCA
CGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACAGAGTTCAT
G
Found at i:2094486 original size:26 final size:26
Alignment explanation
Indices: 2094457--2094509 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2094447 GTTGACATAG
*
2094457 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCACAATCTAA
* *
2094483 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGAAGTTCATTCACAATCTAA
2094509 G
1 G
2094510 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCACAATCTAA
Found at i:2095062 original size:45 final size:45
Alignment explanation
Indices: 2094968--2095064 Score: 106
Period size: 45 Copynumber: 2.2 Consensus size: 45
2094958 GATGATGGTC
* * * * *
2094968 GAGGCATCCATCCGCACCAGAGGCCATCTTGTGCCAATGGTGGTC
1 GAGGCAACCACCCGCACCAGAGGCCAGCTTGTGCCAATGGCGGTA
* **
2095013 GAGGCAACCACCCGCACTAG-GGCCCAGCTTGTGCCGTTGGCGGTA
1 GAGGCAACCACCCGCACCAGAGG-CCAGCTTGTGCCAATGGCGGTA
2095058 GAGGCAA
1 GAGGCAA
2095065 GTGCTCGTAC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 2 0.05
45 41 0.95
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.16
Consensus pattern (45 bp):
GAGGCAACCACCCGCACCAGAGGCCAGCTTGTGCCAATGGCGGTA
Found at i:2103873 original size:26 final size:26
Alignment explanation
Indices: 2103843--2103895 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2103833 ATTGACTTAG
*
2103843 GCATACGGA-GTTCATCCCCAGTCTAA
1 GCATA-GGAGGTTCATCCCCAATCTAA
* *
2103869 GCATATGAGGTTCATTCCCAATCTAA
1 GCATAGGAGGTTCATCCCCAATCTAA
2103895 G
1 G
2103896 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATAGGAGGTTCATCCCCAATCTAA
Found at i:2104237 original size:26 final size:26
Alignment explanation
Indices: 2104201--2104250 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2104191 GACTTAGGCA
*
2104201 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGAAGTTCATTCCCAGTCTAAGCT
2104227 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
2104251 ATTGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCT
Found at i:2105802 original size:26 final size:26
Alignment explanation
Indices: 2105751--2105803 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2105741 GTTGACTTAG
*
2105751 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
* *
2105777 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATCCCCAGCCTAA
2105803 G
1 G
2105804 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGCCTAA
Found at i:2107572 original size:26 final size:26
Alignment explanation
Indices: 2107529--2107581 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2107519 TTTGACTTAG
* *
2107529 GCATACGGTGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
2107555 GCATACGGAGTTTGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2107581 G
1 G
2107582 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2107608 original size:320 final size:320
Alignment explanation
Indices: 2107191--2107772 Score: 754
Period size: 320 Copynumber: 1.8 Consensus size: 320
2107181 TGCACGTTCG
*
2107191 TTTCGTGGGTTGACTTAGGCATACGGAGTTAATTTCCAGTCTAAGCATATGGAATTCATTCCCAG
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTAATTTCCAGTCTAAGCATACGGAATTCATTCCCAG
* ** **
2107256 TCTAAGATCGGACCGGTAGCAGCACACAGAGGGGGATCGGGCCGATCCTCGGCTTGTGCATCCTG
66 TCTAAGATCGGACCGGCAGCAGCACACAGAGGGGGATCGGGCCGATCCTCAACTTACGCATCCTG
* *** ** * * * * * *
2107321 CCTCTTCGGTCGGTTGAGCGCCCGTACGTTTGTTTCATGGGTTGACTTAGGTATACGAAGTTCAT
131 CCTCTCCAACCGACTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTACAT
*
2107386 TC-CTGGTCTAAGCCCCAACCAGACCGAGGGACCCGCAGCGGCATCAACAGCACGCAGAGGGAGA
196 TCTC-GGTCTAAGCCCCAACCAGACCGAGGGACCCACAGCGGCATCAACAGCACGCAGAGGGAGA
2107450 CCGGGCCGATCGCCGATTTACGCATTATTATTCTCTGATCGACTCAGCGCCCACACGCTCA
260 CCGGGCCGATCGCCGATTTACGCATTATTATTCTCTGATCGACTCAGCGCCCACACGCTCA
* * * * **
2107511 TTTCGTGGTTTGACTTAGGCATACGGTGTTCA-TTCCTAGTCTAAGCATACGGAGTTTGTTCCCA
1 TTTCGTGGGTTGACTTAGGCATACGGAGTTAATTTCC-AGTCTAAGCATACGGAATTCATTCCCA
* ** * *
2107575 GTCTAAGATCGGACTGGCAGCAGCATGCAGAGGGGGATTGGGCCGATCCTCAACTTACGTATCCT
65 GTCTAAGATCGGACCGGCAGCAGCACACAGAGGGGGATCGGGCCGATCCTCAACTTACGCATCCT
* * * *
2107640 GCCTCTCCAACCTACTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTAGA
130 GCCTCTCCAACCGACTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTACA
* * * * * * * *
2107705 TTCTCGGTCTAAGCCCCAATCGGATCGAGGGACCTACAGCGGGATCGACAGCACGTAGAGGGGGA
195 TTCTCGGTCTAAGCCCCAACCAGACCGAGGGACCCACAGCGGCATCAACAGCACGCAGAGGGAGA
2107770 CCG
260 CCG
2107773 AGTCGATCCT
Statistics
Matches: 218, Mismatches: 42, Indels: 4
0.83 0.16 0.02
Matches are distributed among these distances:
319 4 0.02
320 213 0.98
321 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (320 bp):
TTTCGTGGGTTGACTTAGGCATACGGAGTTAATTTCCAGTCTAAGCATACGGAATTCATTCCCAG
TCTAAGATCGGACCGGCAGCAGCACACAGAGGGGGATCGGGCCGATCCTCAACTTACGCATCCTG
CCTCTCCAACCGACTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGAAGTACAT
TCTCGGTCTAAGCCCCAACCAGACCGAGGGACCCACAGCGGCATCAACAGCACGCAGAGGGAGAC
CGGGCCGATCGCCGATTTACGCATTATTATTCTCTGATCGACTCAGCGCCCACACGCTCA
Found at i:2108050 original size:45 final size:45
Alignment explanation
Indices: 2107999--2108201 Score: 163
Period size: 45 Copynumber: 4.5 Consensus size: 45
2107989 TCGGGGCTCG
* ** *
2107999 GCATGTGCCAATGGTGGTCGAAGCAACCGCCCGTACCATGGCCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCA
* * * * * * *
2108044 GCATGTGTCGATGGTGTTCGATGTAACCGCCCACACCAGGGGCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCA
* * * ** * * *
2108089 TCTTGTGCCAATGGTGGTCGAGGTAATTGCTCGCACCAAGGGCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCA
* * * *
2108134 GCATGTGCCGATGGTGATCGAGGCAACTGTCCACACCAAGGCCCA
1 GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCA
* * * *
2108179 GCTTGTGTCAATGGCGGTTGAGG
1 GCATGTGCCAATGGTGGTCGAGG
2108202 GAAGTGCCCA
Statistics
Matches: 122, Mismatches: 36, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 122 1.00
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.20
Consensus pattern (45 bp):
GCATGTGCCAATGGTGGTCGAGGCAACCGCCCACACCAAGGCCCA
Found at i:2108168 original size:90 final size:90
Alignment explanation
Indices: 2108002--2108201 Score: 220
Period size: 90 Copynumber: 2.2 Consensus size: 90
2107992 GGGCTCGGCA
* * * * * *
2108002 TGTGCCAATGGTGGTCGAAGCAACCGCCCGTACCATGGCCCAGCATGTGTCGATGGTGTTCGATG
1 TGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
* * * *
2108067 TAACCGCCCACACCAGGGGCCATCT
66 CAACCGCCCACACCAAGGCCCAGCT
* ** * *
2108092 TGTGCCAATGGTGGTCGAGGTAATTGCTCGCACCAAGGGCCAGCATGTGCCGATGGTGATCGAGG
1 TGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
* *
2108157 CAACTGTCCACACCAAGGCCCAGCT
66 CAACCGCCCACACCAAGGCCCAGCT
* * *
2108182 TGTGTCAATGGCGGTTGAGG
1 TGTGCCAATGGTGGTCGAGG
2108202 GAAGTGCCCA
Statistics
Matches: 90, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (90 bp):
TGTGCCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
CAACCGCCCACACCAAGGCCCAGCT
Found at i:2108770 original size:26 final size:26
Alignment explanation
Indices: 2108733--2108785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2108723 GTTGAATTAG
2108733 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2108759 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2108785 G
1 G
2108786 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2109120 original size:26 final size:26
Alignment explanation
Indices: 2109090--2109142 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2109080 GTTGACTTAG
*
2109090 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
* *
2109116 GCATACGTAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAATCTAA
2109142 G
1 G
2109143 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:2109797 original size:45 final size:45
Alignment explanation
Indices: 2109594--2109799 Score: 169
Period size: 45 Copynumber: 4.6 Consensus size: 45
2109584 TCGGGGCTCG
* * ** * *
2109594 GCATGTGCCAATGTTAGTTAAGGCAACCGTCCGCACCACTGCCCA
1 GCATGTGCCGATGTTGGTCGAGGCAACCGCCCGCACCACGGCCCA
* * * * *
2109639 GCATGTGTCGATGTTAGTTGAGGTAACCGCCCGCACCACTGCCCA
1 GCATGTGCCGATGTTGGTCGAGGCAACCGCCCGCACCACGGCCCA
* * * * * * *
2109684 GCATGTGCTGATGTTGTTCGATGCAACTGCCCGTACCAGGGGCCA
1 GCATGTGCCGATGTTGGTCGAGGCAACCGCCCGCACCACGGCCCA
* * * * * * *
2109729 TCTTGTGCCAATGATGGTTGAGGCAACCGCTCGCACCAGGGCCCA
1 GCATGTGCCGATGTTGGTCGAGGCAACCGCCCGCACCACGGCCCA
* *
2109774 GCTTGTGCCGATGGTGGTCGAGGCAA
1 GCATGTGCCGATGTTGGTCGAGGCAA
2109800 GTGCCTGTAC
Statistics
Matches: 128, Mismatches: 33, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 128 1.00
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (45 bp):
GCATGTGCCGATGTTGGTCGAGGCAACCGCCCGCACCACGGCCCA
Found at i:2111129 original size:158 final size:158
Alignment explanation
Indices: 2110840--2111129 Score: 372
Period size: 158 Copynumber: 1.8 Consensus size: 158
2110830 GCAGGACCAA
* * * * * *
2110840 CAGCAGGATCGATAGCACGCAGGGGGGATCGGGCCGATCCCCGGCTTATGCATTCTACCTTTTCG
1 CAGCAGGATCGACAGCACGCAGGAGGGATCGAGCCGATCCCCGACTTATGCATTCTACCCTCTCG
* * **
2110905 ATCGGCTGAGTGCCCGCAAGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
66 ATCGGCTGAGCGCCCGCAAGCTCATTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATGTC
2110970 TACGCCCCAGTCGGATCAAGGGTTGTGG
131 TACGCCCCAGTCGGATCAAGGGTTGTGG
*
2110998 CAGCAGGATCGACAGCACGCAGAGAGGGATCGAGCC-AGTCCCCGACTTGTGCA-T-TACGCCTC
1 CAGCAGGATCGACAGCACGCAG-GAGGGATCGAGCCGA-TCCCCGACTTATGCATTCTAC-CCTC
* * * * *
2111060 TCGGTCGGCTTAGCGCCCGCAAGCTCATTTCGTGGTTTCACTTCGGCATACGGAGTTCATTTCCA
63 TCGATCGGCTGAGCGCCCGCAAGCTCATTTCATGGGTTCACTTAGGCATACGGAGTTCA-TTCCA
2111125 -GTCTA
127 TGTCTA
2111130 AGCATATAGA
Statistics
Matches: 112, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
157 3 0.03
158 80 0.71
159 29 0.26
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
CAGCAGGATCGACAGCACGCAGGAGGGATCGAGCCGATCCCCGACTTATGCATTCTACCCTCTCG
ATCGGCTGAGCGCCCGCAAGCTCATTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCATGTC
TACGCCCCAGTCGGATCAAGGGTTGTGG
Found at i:2111857 original size:26 final size:27
Alignment explanation
Indices: 2111817--2111867 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
2111807 CGTGGGTTGA
2111817 CTTAGGCATACGGAGTTCATCCCCAGT
1 CTTAGGCATACGGAGTTCATCCCCAGT
* *
2111844 CTTA-GCATATGGAGTTCATTCCCA
1 CTTAGGCATACGGAGTTCATCCCCA
2111868 TTCTAAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACGGAGTTCATCCCCAGT
Found at i:2112331 original size:45 final size:45
Alignment explanation
Indices: 2112194--2112391 Score: 170
Period size: 45 Copynumber: 4.4 Consensus size: 45
2112184 GGGCTCGACA
* * * *
2112194 TGTGCCGATAGTGGTCGAGGCAACCGCCCGTACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCTAGCT
* * * *
2112239 TGTGCCGATGGTGTTCGATGCAACCGCTCGTACCAGAGG--TGATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAG-GGCCT-AGCT
* * *
2112284 TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCTAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCTAGCT
** ** * *
2112329 TGTGCCGATGGCAGTCGAGGCAAGTGCCTGTACCAAAGGG-C-AGCC
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACC--AGGGCCTAGCT
*
2112374 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2112392 TGCATGTGCC
Statistics
Matches: 120, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
44 2 0.02
45 110 0.92
46 4 0.03
47 4 0.03
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCTAGCT
Found at i:2112389 original size:90 final size:90
Alignment explanation
Indices: 2112194--2112391 Score: 206
Period size: 90 Copynumber: 2.2 Consensus size: 90
2112184 GGGCTCGACA
* * *
2112194 TGTGCCGAT-AGTGGTCGAGGCAACCGCCCGTACCACGGCCCAGCATGTGCCGATGGTGTTCGAT
1 TGTGCCGATGA-TGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGAGTTCGAG
* * *
2112258 GCAACCGCTCGTACCAGAGGTGATCT
65 GCAACCGCTCGTACCAAAGGTGAGCC
* * * * * *
2112284 TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCTAGCTTGTGCCGATGGCAG-TCGAG
1 TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGG-AGTTCGAG
**
2112348 GCAAGTGC-CTGTACCAAAGG-GCAGCC
65 GCAACCGCTC-GTACCAAAGGTG-AGCC
2112374 TGTGCCGATGATGGTCGA
1 TGTGCCGATGATGGTCGA
2112392 TGCATGTGCC
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
89 2 0.02
90 84 0.97
91 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGAGTTCGAGG
CAACCGCTCGTACCAAAGGTGAGCC
Found at i:2114040 original size:45 final size:45
Alignment explanation
Indices: 2113969--2114116 Score: 165
Period size: 45 Copynumber: 3.3 Consensus size: 45
2113959 CCAGGGCTCG
* *
2113969 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCATGGCCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCACGGCCCA
* * *
2114014 GCATGTGCCGATGGTGTTCGATGCAACCGTCCGCGCCGACGG-CCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACC-ACGGCCCA
* * * *
2114059 TCTTGTGCCGATGGTGGTT-GAGGCAACCGCCCGCACTAGGGCCCA
1 GCATGTGCCGATGGT-GTTCGAGGCAACCGCCCGCACCACGGCCCA
* *
2114104 GCTTGTGTCGATG
1 GCATGTGCCGATG
2114117 ACGGTCGAGA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
44 3 0.03
45 77 0.90
46 6 0.07
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCACGGCCCA
Found at i:2114156 original size:90 final size:90
Alignment explanation
Indices: 2113972--2114169 Score: 209
Period size: 90 Copynumber: 2.2 Consensus size: 90
2113962 GGGCTCGGCA
* * ** *
2113972 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGACGGTCGATG
* * * * * *
2114037 CAACCGTCCGCGCCGACGGCCATCT
66 CAACCGCCCGCACCAAAGGCCAGCC
* * *
2114062 TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACTAGGGCCCAGCTTGTGTCGATGACGGTCGA-G
1 TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGACGGTCGATG
** * *
2114126 ACAAGTGCCCGTACCAAAGGGCAGCC
66 -CAACCGCCCGCACCAAAGGCCAGCC
*
2114152 TGTGCCGATGATGGTTGA
1 TGTGCCGATGGTGGTTGA
2114170 TGCATGTGCC
Statistics
Matches: 88, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
89 1 0.01
90 87 0.99
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCATGTGCCGATGACGGTCGATG
CAACCGCCCGCACCAAAGGCCAGCC
Found at i:2115015 original size:45 final size:45
Alignment explanation
Indices: 2114959--2115162 Score: 182
Period size: 45 Copynumber: 4.6 Consensus size: 45
2114949 CAAGGCTCGG
* *
2114959 CATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCACGGCCCAA
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAA
* * * * *
2115004 CATGTGTCGATGGT-GTACGATGCAACTGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGT-CGAGGCAACCGCCCGCACCAGGGCCCAA
* * * * * * *
2115049 CTTGTGCCGATGGTGGTTGAGGCAATCACTCAG-ACCAAGGG-TCGA
1 CATGTGCCGATGGTGGTCGAGGCAACCGC-CCGCACC-AGGGCCCAA
* * *
2115094 CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACTAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAA
* *
2115139 CTTGTGTCGATGGT-GTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2115163 GTGCCCATAT
Statistics
Matches: 122, Mismatches: 31, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
44 17 0.14
45 97 0.80
46 8 0.07
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAA
Found at i:2116480 original size:26 final size:26
Alignment explanation
Indices: 2116430--2116482 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2116420 GTTAACTTTG
* * *
2116430 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2116456 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2116482 G
1 G
2116483 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2123556 original size:26 final size:26
Alignment explanation
Indices: 2123526--2123604 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
2123516 GTTGACTTAG
2123526 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2123552 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2123578 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2123604 G
1 G
2123605 ATTGGACTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2124138 original size:44 final size:45
Alignment explanation
Indices: 2124045--2124147 Score: 113
Period size: 44 Copynumber: 2.3 Consensus size: 45
2124035 CCGAGGTTCG
**
2124045 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAAGGGCTG
1 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAAGGGCCA
* * *
2124090 GCATGTGCTGATGG-GGATTGAGG-AATCGCCCGCACC-AGGGCCCA
1 GCATGTGCCGATGGTGG-TCGAGGCAATCGCCCACACCAAGGG-CCA
*
2124134 GCATGTGCCCATGG
1 GCATGTGCCGATGG
2124148 CAGTCAAGGC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
43 4 0.08
44 27 0.55
45 18 0.37
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAAGGGCCA
Found at i:2125160 original size:26 final size:26
Alignment explanation
Indices: 2125121--2125173 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2125111 CCGATCTAAT
2125121 CTTAGACTGAGAATGAAC-TCTGTATG
1 CTTAGACTGAGAATGAACTTC-GTATG
*
2125147 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
2125173 C
1 C
2125174 CTAATTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:2126538 original size:90 final size:90
Alignment explanation
Indices: 2126432--2126629 Score: 211
Period size: 90 Copynumber: 2.2 Consensus size: 90
2126422 GGCACATGCA
* * * * * * * *
2126432 TCGACCATCATCGGCACAGGCT-ACCCTTTGGTATGGGCACTTGCCTCGACCGCCATCAG-CACA
1 TCGACCACCATCGGCACAAGATGACCC-CTGGTATGGGCAATTGCATCGAACACCAT-AGACACA
*
2126495 AGCTGGGCCCTGGTGCAGGCAGTTACC
64 AGCTGGGCCATGGTGCAGGCAGTTACC
* * * * *
2126522 TCGACCACCATTGGCACAAGATGGCCCCTGGTATGGGCAATTGCATCGAATACCATTGACACATG
1 TCGACCACCATCGGCACAAGATGACCCCTGGTATGGGCAATTGCATCGAACACCATAGACACAAG
* *
2126587 CTGGGCCATGGTGCAGGCGGTTGCC
66 CTGGGCCATGGTGCAGGCAGTTACC
*
2126612 TCGATCACCATCGGCACA
1 TCGACCACCATCGGCACA
2126630 TGCTGGGCCG
Statistics
Matches: 88, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
89 1 0.01
90 84 0.95
91 3 0.03
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (90 bp):
TCGACCACCATCGGCACAAGATGACCCCTGGTATGGGCAATTGCATCGAACACCATAGACACAAG
CTGGGCCATGGTGCAGGCAGTTACC
Found at i:2126622 original size:45 final size:45
Alignment explanation
Indices: 2126467--2126679 Score: 185
Period size: 45 Copynumber: 4.7 Consensus size: 45
2126457 CTTTGGTATG
* * *
2126467 GGCACTTGCCTCGACCGCCATC-AGCACAAGCTGGGCCCTGGTGCA
1 GGCAGTTGCCTCGACCACCATCGA-CACATGCTGGGCCCTGGTGCA
* * * * * * ***
2126512 GGCAGTTACCTCGACCACCATTGGCACAAGATGGCCCCTGGTATG
1 GGCAGTTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCA
* * ** * *
2126557 GGCAATTGCATCGAATACCATTGACACATGCTGGGCCATGGTGCA
1 GGCAGTTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCA
* * * * *
2126602 GGCGGTTGCCTCGATCACCATCGGCACATGCTGGGCCGTGGTGTA
1 GGCAGTTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCA
* *
2126647 GGCGGTTGCCTCAACCACCATCGACACATGCTG
1 GGCAGTTGCCTCGACCACCATCGACACATGCTG
2126680 AGTCCCGTTC
Statistics
Matches: 132, Mismatches: 35, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
45 132 1.00
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (45 bp):
GGCAGTTGCCTCGACCACCATCGACACATGCTGGGCCCTGGTGCA
Found at i:2126667 original size:90 final size:90
Alignment explanation
Indices: 2126460--2126679 Score: 210
Period size: 90 Copynumber: 2.4 Consensus size: 90
2126450 GGCTACCCTT
* * * * * * *
2126460 TGGTATGGGCACTTGCCTCGACCGCCATC-AGCACAAGCTGGGCCCTGGTGCAGGCAGTTACCTC
1 TGGTATAGGCAATTGCATCGAACACCATCGA-CACATGCTGGGCCATGGTGCAGGCAGTTACCTC
*
2126524 GACCACCATTGGCACAAGATGGCCCC
65 GACCACCATCGGCACAAGATGGCCCC
* * * * *
2126550 TGGTATGGGCAATTGCATCGAATACCATTGACACATGCTGGGCCATGGTGCAGGCGGTTGCCTCG
1 TGGTATAGGCAATTGCATCGAACACCATCGACACATGCTGGGCCATGGTGCAGGCAGTTACCTCG
* * * * *
2126615 ATCACCATCGGCACATGCTGGGCCG
66 ACCACCATCGGCACAAGATGGCCCC
* ** *
2126640 TGGTGTAGGCGGTTGCCTC-AACCACCATCGACACATGCTG
1 TGGTATAGGCAATTGCATCGAA-CACCATCGACACATGCTG
2126680 AGTCCCGTTC
Statistics
Matches: 105, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
89 2 0.02
90 102 0.97
91 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.20
Consensus pattern (90 bp):
TGGTATAGGCAATTGCATCGAACACCATCGACACATGCTGGGCCATGGTGCAGGCAGTTACCTCG
ACCACCATCGGCACAAGATGGCCCC
Found at i:2127304 original size:26 final size:26
Alignment explanation
Indices: 2127268--2127320 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2127258 CTAGTCTGAT
2127268 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2127294 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2127320 C
1 C
2127321 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2128126 original size:45 final size:45
Alignment explanation
Indices: 2128077--2128279 Score: 151
Period size: 45 Copynumber: 4.5 Consensus size: 45
2128067 GTACGGGCAT
** * * *
2128077 TTGCCTCGATTGCCATCAGCACAAGCTGGGCCCTGGTGTGGGCGG
1 TTGCCTCGATCACCATCAGCACAAGATGGGCCCTGGTGCGGGCGA
* * *
2128122 TTGCCTTGATCACCATCGGCACATGCA--GGCCCTTGGTGCGGGCGA
1 TTGCCTCGATCACCATCAGCACAAG-ATGGGCCC-TGGTGCGGGCGA
* * ** * * *
2128167 TTGCTTCGACCATTATCGGTACAAGATGGCCCCTGGTGCGGGCGA
1 TTGCCTCGATCACCATCAGCACAAGATGGGCCCTGGTGCGGGCGA
* * * * * *
2128212 TTGCATCGAACACCATCAACACATA-ATGGGCCGTGGTGTGGGCGG
1 TTGCCTCGATCACCATCAGCACA-AGATGGGCCCTGGTGCGGGCGA
* *
2128257 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGATCACCATCAGCACA
2128280 TGCCAAGCCC
Statistics
Matches: 122, Mismatches: 31, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
44 6 0.05
45 111 0.91
46 5 0.04
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.22
Consensus pattern (45 bp):
TTGCCTCGATCACCATCAGCACAAGATGGGCCCTGGTGCGGGCGA
Found at i:2128280 original size:45 final size:45
Alignment explanation
Indices: 2128107--2128280 Score: 154
Period size: 45 Copynumber: 3.9 Consensus size: 45
2128097 ACAAGCTGGG
* * * * *
2128107 CCCTGGTGTGGGCGGTTGCCTTGATCACCATCGGCACATGCA-GGC
1 CCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACAT-AATGGC
* * ** *
2128152 CCTTGGTGCGGGCGATTGCTTCGACCATTATCGGTACA-AGATGGC
1 CCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATA-ATGGC
* * ** *
2128197 CCCTGGTGCGGGCGATTGCATCGAACACCATCAACACATAATGGG
1 CCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATAATGGC
* * *
2128242 CCGTGGTGTGGGCGGTTGCCTCGACCACCATCGGCACAT
1 CCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACAT
2128281 GCCAAGCCCC
Statistics
Matches: 100, Mismatches: 26, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
44 1 0.01
45 98 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (45 bp):
CCCTGGTGCGGGCGATTGCCTCGACCACCATCGGCACATAATGGC
Found at i:2128764 original size:26 final size:26
Alignment explanation
Indices: 2128722--2128774 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2128712 TCGGTCCGAT
* *
2128722 CTTAGACTGGGAGTGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2128748 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2128774 C
1 C
2128775 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2129736 original size:13 final size:13
Alignment explanation
Indices: 2129718--2129742 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2129708 ATGGTCAATG
2129718 CATGTGCCATCAC
1 CATGTGCCATCAC
2129731 CATGTGCCATCA
1 CATGTGCCATCA
2129743 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2131010 original size:26 final size:26
Alignment explanation
Indices: 2130973--2131025 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2130963 GTTCACTTAG
2130973 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2130999 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
2131025 G
1 G
2131026 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2131135 original size:162 final size:158
Alignment explanation
Indices: 2130960--2131481 Score: 395
Period size: 162 Copynumber: 3.3 Consensus size: 158
2130950 CCTCGTTTAG
* *
2130960 TGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* *
2131025 GATCAGATCGATAGCAGCACGCAGAGGGGGACTGGGCCAATCCTCGACTTGCGCATCCTGCCTCT
66 GATCAGATCGA-AGCAGCACGCAGAGGGGGACAGGG-CAATCCTCGGCTTGCGCATCCTGCCT-T
*
2131090 T-CGACTGACTGAGCACCTGCACACTTGTTTCA
128 TCCGACTGACTGAGC-CC-GCACGCTTGTTTCA
* * ** **
2131122 TGGGTTGACTTAGGCATATGGAGTTCATTCCC-GATCTAAGCCCCA-ACCG-GACCAAGGGACCC
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAG---CATACAGAGTTC-A--TTCCC
* * * * * * *
2131184 -G--T-AG--CAGGATCG--GTAGCACGTAGAGGGGGACCGGGTAGATCCTTGGCTTACGCATTC
59 AGTCTAAGATCA-GATCGAAGCAGCACGCAGAGGGGGACAGGGCA-ATCCTCGGCTTGCGCATCC
* * * ** * * **
2131241 TGGCTTTTCCAGCCTGCTCTCTGCCCGTACGGTCATTTCA
122 T-GCCTTTCC-GACTG-ACTGAGCCCGCACGCTTGTTTCA
* *
2131281 TGGGTTGACTTAGG-ATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
2131345 GATCGGACCGACAGCAGCACGCAAAGGGGGACAGGGTCGATCCTCGGCTTGTGCATCCTACCTTT
66 GATCAGATCGA-AGCAGCACGCAGAGGGGGACAGGG-CAATCCTCGGCTTGCGCATCCTGCCTTT
* *
2131410 CCTACTGACTGAGCGCCCACACGCTTGTTTCA
129 CCGACTGACTGA--GCCCGCACGCTTGTTTCA
** * *
2131442 TGGGTTGACTTAGGCATACGTTGTTCATTCTCGGTCTAAG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
2131482 TCCCAACCAG
Statistics
Matches: 269, Mismatches: 62, Indels: 58
0.69 0.16 0.15
Matches are distributed among these distances:
154 3 0.01
155 3 0.01
156 4 0.01
157 4 0.01
158 61 0.23
159 34 0.13
160 12 0.04
161 43 0.16
162 92 0.34
163 3 0.01
164 4 0.01
165 3 0.01
166 3 0.01
ACGTcount: A:0.21, C:0.27, G:0.26, T:0.26
Consensus pattern (158 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAA
GATCAGATCGAAGCAGCACGCAGAGGGGGACAGGGCAATCCTCGGCTTGCGCATCCTGCCTTTCC
GACTGACTGAGCCCGCACGCTTGTTTCA
Found at i:2131325 original size:26 final size:26
Alignment explanation
Indices: 2131295--2131345 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2131285 TTGACTTAGG
*
2131295 ATACGGAGTTCTTTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
2131321 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2131346 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Done.