Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 19 of 120
Found at i:2131403 original size:320 final size:320
Alignment explanation
Indices: 2130881--2131489 Score: 821
Period size: 320 Copynumber: 1.9 Consensus size: 320
2130871 GACCGACAGG
* * **
2130881 ACGTAGAGGGGGATCGGGTTGATCCTCGGCTTACGCATTATGCCTCTCTGGCCTGCTCAACGCCC
1 ACGTAGAGGGGGACCGGGTAGATCCTCGGCTTACGCATTATGCCTCTCCAGCCTGCTCAACGCCC
*
2130946 GTACCCTCGTTTAGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTT
66 GTACCCTCATTTAGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * *
2131011 CATTCCCAGTCTAAGATCAGATCGATAGCAGCACGCAGAGGGGGACTGGGCCAATCCTCGACTTG
131 CATTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAAAGGGGGACAGGGCCAATCCTCGACTTG
* **
2131076 CGCATCCTGCCTCTT-CGACTGACTGAGCACCTGCACACTTGTTTCATGGGTTGACTTAGGCATA
196 CGCATCCTACCT-TTCCGACTGACTGAGCACCCACACACTTGTTTCATGGGTTGACTTAGGCATA
*
2131140 TGGAGTTCATTCCCGATCTAAGCCCCAACCGGACCAAGGGACCCGTAGCAGGATCGGTAGC
260 CGGAGTTCATTCCCGATCTAAGCCCCAACCGGACCAAGGGACCCGTAGCAGGATCGGTAGC
* * * * *
2131201 ACGTAGAGGGGGACCGGGTAGATCCTTGGCTTACGCATTCTGGCTTTTCCAGCCTGCTC-TCTGC
1 ACGTAGAGGGGGACCGGGTAGATCCTCGGCTTACGCATTAT-GCCTCTCCAGCCTGCTCAAC-GC
** * * * *
2131265 CCGTACGGTCATTTCA-TGGGTTGACTTAGG-ATACGGAGTTCTTTCCCAGTCTAAGCATACGGA
64 CCGTACCCTCATTT-AGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGA
* * * *
2131328 GTTCATTCCCAGTCTAAGATCGGACCGACAGCAGCACGCAAAGGGGGACAGGGTCGATCCTCGGC
128 GTTCATTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAAAGGGGGACAGGGCCAATCCTCGAC
* * * *
2131393 TTGTGCATCCTACCTTTCCTACTGACTGAGCGCCCACACGCTTGTTTCATGGGTTGACTTAGGCA
193 TTGCGCATCCTACCTTTCCGACTGACTGAGCACCCACACACTTGTTTCATGGGTTGACTTAGGCA
** * * *
2131458 TACGTTGTTCATTCTCGGTCTAAGTCCCAACC
258 TACGGAGTTCATTCCCGATCTAAGCCCCAACC
2131490 AGACTGAAGG
Statistics
Matches: 248, Mismatches: 37, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
319 2 0.01
320 206 0.83
321 39 0.16
322 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.26
Consensus pattern (320 bp):
ACGTAGAGGGGGACCGGGTAGATCCTCGGCTTACGCATTATGCCTCTCCAGCCTGCTCAACGCCC
GTACCCTCATTTAGTGGGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTT
CATTCCCAGTCTAAGATCAGACCGACAGCAGCACGCAAAGGGGGACAGGGCCAATCCTCGACTTG
CGCATCCTACCTTTCCGACTGACTGAGCACCCACACACTTGTTTCATGGGTTGACTTAGGCATAC
GGAGTTCATTCCCGATCTAAGCCCCAACCGGACCAAGGGACCCGTAGCAGGATCGGTAGC
Found at i:2131633 original size:320 final size:320
Alignment explanation
Indices: 2130901--2131636 Score: 820
Period size: 320 Copynumber: 2.3 Consensus size: 320
2130891 GGATCGGGTT
* * * ** * *
2130901 GATCCTCGGCTTACGCATTATGCCTC-TCTGGCCTGCTCAACGCCCGTACCCTCGTTT-AGTGGG
1 GATCCTCGACTTACGCATTCTGGCTCTTCCAGCCAGCT-AACGCCCGTACACTCGTTTCA-TGGG
*
2130964 TTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
64 TTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATC
* * * * *
2131029 AGATCGATAGCAGCACGCAGAGGGGGACTGGGCCAATCCTCGACTTGCGCATCCTGCCTCTTCGA
129 AGACCGACAGCAGCACGCAAAGGGGGACAGGGCCAATCCTCGACTTGCGCATCCTACCTCTTCGA
** *
2131094 CTGACTGAGCACCTGCACACTTGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCGATCT
194 CTGACTGAGCACCCACACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCT
* * * * * * *
2131159 AAGCCCCAACCGGACCAAGGGACCCGTAGCAGGATCGGTAGCACGTAGAGGGGGACCGGGTA
259 AAGCCCCAACCAGACCAAGGGACCCGTAGCAGGATCGGCAACACGCAGAGAGGGACCGAGCA
* * * * ** ** *
2131221 GATCCTTGGCTTACGCATTCTGGCTTTTCCAGCCTGCTCTCTGCCCGTACGGTCATTTCATGGGT
1 GATCCTCGACTTACGCATTCTGGCTCTTCCAGCCAGCTAAC-GCCCGTACACTCGTTTCATGGGT
* * * *
2131286 TGACTTAGG-ATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCA
* * * * *
2131350 GACCGACAGCAGCACGCAAAGGGGGACAGGGTCGATCCTCGGCTTGTGCATCCTACCT-TTCCTA
130 GACCGACAGCAGCACGCAAAGGGGGACAGGGCCAATCCTCGACTTGCGCATCCTACCTCTT-CGA
* * ** * *
2131414 CTGACTGAGCGCCCACACGCTTGTTTCATGGGTTGACTTAGGCATACGTTGTTCATTCTCGGTCT
194 CTGACTGAGCACCCACACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCT
* * * * * *
2131479 AAGTCCCAACCAGACTGAA-GGACCTGTAGC-GAGATTGGCAACACGCAGAGAGGGATCGAGCC
259 AAGCCCCAACCAGAC-CAAGGGACCCGTAGCAG-GATCGGCAACACGCAGAGAGGGACCGAGCA
** * * *
2131541 GATCCTCGACTTGTGCATTCTGGCTCTTCGA-CCAGTTGAACGCCCGCACACTCGTTTCATGGGT
1 GATCCTCGACTTACGCATTCTGGCTCTTCCAGCCAGCT-AACGCCCGTACACTCGTTTCATGGGT
* *
2131605 TGACTTAGGCATACGTAGTGCATTCCCAGTCT
65 TGACTTAGGCATACGAAGTTCATTCCCAGTCT
2131637 CGACCAATCA
Statistics
Matches: 343, Mismatches: 65, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
319 35 0.10
320 270 0.79
321 37 0.11
322 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.25
Consensus pattern (320 bp):
GATCCTCGACTTACGCATTCTGGCTCTTCCAGCCAGCTAACGCCCGTACACTCGTTTCATGGGTT
GACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAG
ACCGACAGCAGCACGCAAAGGGGGACAGGGCCAATCCTCGACTTGCGCATCCTACCTCTTCGACT
GACTGAGCACCCACACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAA
GCCCCAACCAGACCAAGGGACCCGTAGCAGGATCGGCAACACGCAGAGAGGGACCGAGCA
Found at i:2131932 original size:45 final size:45
Alignment explanation
Indices: 2131883--2131989 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
2131873 ATCTTTTACT
* * *
2131883 GATGGTGGTCGAGGCAATCGT-CCGCACCAAGGG-CCGGCATGTGTC
1 GATGGTGATCGAGGCAA-CCTCCCGCACC-AGGGCCCAGCATGTGTC
*
2131928 GATGGTGATCGAGGCAACCTCCCGCACCAGGGCCCAGCTTGTGTC
1 GATGGTGATCGAGGCAACCTCCCGCACCAGGGCCCAGCATGTGTC
*
2131973 GATGGCGATCGAGGCAA
1 GATGGTGATCGAGGCAA
2131990 GTGCCTGTAC
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 6 0.11
45 49 0.89
ACGTcount: A:0.20, C:0.28, G:0.36, T:0.17
Consensus pattern (45 bp):
GATGGTGATCGAGGCAACCTCCCGCACCAGGGCCCAGCATGTGTC
Found at i:2133842 original size:158 final size:157
Alignment explanation
Indices: 2133293--2133882 Score: 591
Period size: 157 Copynumber: 3.7 Consensus size: 157
2133283 TAGTAGGACC
* * * * * *
2133293 AGCATGCAG-GGGGGATCAGGCGGATCCCCGGCTTACGCATTTTGCTCTCCGACCGACTGAGTGC
1 AGCACGCAGAGGGGGA-CGGGCTGATCCTCGGCTTGCGCATTTGGCTCTCCGACCGACTGAGTGC
* ** * *
2133357 CCGCACGCTCGTTTCGTGGGTTGGTTTAGGCATACAGAGTTCATTCCATATCTAAGCCCCAGTTG
65 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAGATCTAAGCCCCAGCTG
*
2133422 TACCGAAGGTTGTGGCAGTGAAACCGGT
130 GACCGAAGGTTGTGGCAGTGAAACCGGT
* * * * *
2133450 AGCACGCAG-GCGGGATCGGACGGATCCTCGGCTTGCGCATTTTGCTCTCCGACCGACTGAGCGC
1 AGCACGCAGAGGGGGA-CGGGCTGATCCTCGGCTTGCGCATTTGGCTCTCCGACCGACTGAGTGC
* *
2133514 CCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATATCTAAGCCCCAGCTG
65 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAGATCTAAGCCCCAGCTG
2133579 GACCGAAGGTTGTGGCAGTGAAACCGGT
130 GACCGAAGGTTGTGGCAGTGAAACCGGT
* * * ** * * *
2133607 AGCACGCAGAGGTGGACTGGG-TCGATCCTTGGCTTGCGCATTATGCCTCT-CGGTCGGCTCAAT
1 AGCACGCAGAGGGGGAC-GGGCT-GATCCTCGGCTTGCGCATT-TGGCTCTCCGACCGACTGAGT
* * * * * * *
2133670 GCTCGTACGATCGTTTCGTGGGTTGACTTTGGCATACAGAGTTCATTCTC-GATCTAAGCCCTAA
63 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC-CAGATCTAAGCCCCAG
* * *** * * ** *
2133734 CCGGACTG-AGGGACTCGCAGCGGGATCGGT
127 CTGGACCGAAGGTTGTGGCAGTGAAACCGGT
* * * * *
2133764 AGCACGCAGAGGGGGACAGGGCTGTTCCTCAGTTTGCGCATTCTGGCTCTCCGACCAATTGAGTG
1 AGCACGCAGAGGGGGAC-GGGCTGATCCTCGGCTTGCGCATT-TGGCTCTCCGACCGACTGAGTG
* *
2133829 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GTAGTGCATTCCCGATCT
64 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAG-AGTTCATTCCAGATCT
2133883 TGACAAACCA
Statistics
Matches: 360, Mismatches: 64, Indels: 17
0.82 0.15 0.04
Matches are distributed among these distances:
157 212 0.59
158 142 0.39
159 6 0.02
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (157 bp):
AGCACGCAGAGGGGGACGGGCTGATCCTCGGCTTGCGCATTTGGCTCTCCGACCGACTGAGTGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAGATCTAAGCCCCAGCTGG
ACCGAAGGTTGTGGCAGTGAAACCGGT
Found at i:2134171 original size:45 final size:44
Alignment explanation
Indices: 2134036--2134191 Score: 150
Period size: 45 Copynumber: 3.5 Consensus size: 44
2134026 GCATGGCATA
* * * * *
2134036 TGCCGTTGGTGGTCGAGGCAACCGCTCACACCATGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCACTCGCACCA-GGGCCAGCTTG
* * * * * *
2134081 TGCCGAAGGTGTTCGATGCAACCACTGGTACCAAGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACCACTCGCACC-AGGGCCAGCTTG
* *
2134126 TGTCGATGGTGGTCGAGGCAACCACCCGCACCAGGGTCCAGCTTG
1 TGCCGATGGTGGTCGAGGCAACCACTCGCACCAGGG-CCAGCTTG
* *
2134171 TGCCGATGGCGGTCGACGCAA
1 TGCCGATGGTGGTCGAGGCAA
2134192 GTACCTGTAC
Statistics
Matches: 87, Mismatches: 22, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
44 4 0.05
45 82 0.94
46 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (44 bp):
TGCCGATGGTGGTCGAGGCAACCACTCGCACCAGGGCCAGCTTG
Found at i:2135563 original size:26 final size:26
Alignment explanation
Indices: 2135485--2135552 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
2135475 GTTGACTTAG
2135485 GCATACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
*
2135511 GCAAACAGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
2135537 GCATACAGAGTTCATT
1 GCATACAGAGTTCATT
2135553 TCCAGTCTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:2136056 original size:45 final size:45
Alignment explanation
Indices: 2135991--2136103 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
2135981 AGGCTCGGCA
* * * *
2135991 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCT
* * *
2136036 TGTGCTGATGGTGGTTGAGGCAACCATCCACACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCT
**
2136081 TGTGCCGATGGCAGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2136104 GTGCCCATAC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.19, C:0.29, G:0.35, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCT
Found at i:2137259 original size:26 final size:26
Alignment explanation
Indices: 2137230--2137282 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2137220 GTTGACTTAG
2137230 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* * *
2137256 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2137282 G
1 G
2137283 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2137771 original size:45 final size:45
Alignment explanation
Indices: 2137721--2137926 Score: 169
Period size: 45 Copynumber: 4.6 Consensus size: 45
2137711 ATGGGGCTCG
*
2137721 ACATGTGTCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
* * * * * * *
2137766 ACATGTGCCAATGGTGTTTGATGCAACCGCCCCCACCAAGGGCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
* * * * * * *
2137811 TCTTGTACCGATGGTGGTAGAGGCAATCGCCCGCACCACGGGCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
* * * * * * *
2137856 GCATGTGTCGATGGTGATCGGGGCAACTGCCCACACCAGGGCCCG
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
* * * **
2137901 GCTTGTGCCTATGGCAGTCGAGGCAA
1 ACATGTGCCGATGGTGGTCGAGGCAA
2137927 GTGCCCATAC
Statistics
Matches: 123, Mismatches: 38, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 123 1.00
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.17
Consensus pattern (45 bp):
ACATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
Found at i:2137882 original size:90 final size:89
Alignment explanation
Indices: 2137729--2137898 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 89
2137719 CGACATGTGT
* * * *
2137729 CGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAACATGTGCCAATGGTGTTTGATGCAACC
1 CGATGGTGGTAGAGGCAACCGCCCACACCACGGCCCAACATGTGCCAATGGTGATCGAGGCAACC
*
2137794 GCCCCCACCAAGGGCCATCTTGTAC
66 GCCCACACC-AGGGCCATCTTGTAC
* * * * * * * *
2137819 CGATGGTGGTAGAGGCAATCGCCCGCACCACGGGCCAGCATGTGTCGATGGTGATCGGGGCAACT
1 CGATGGTGGTAGAGGCAACCGCCCACACCACGGCCCAACATGTGCCAATGGTGATCGAGGCAACC
2137884 GCCCACACCAGGGCC
66 GCCCACACCAGGGCC
2137899 CGGCTTGTGC
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
89 6 0.09
90 61 0.91
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (89 bp):
CGATGGTGGTAGAGGCAACCGCCCACACCACGGCCCAACATGTGCCAATGGTGATCGAGGCAACC
GCCCACACCAGGGCCATCTTGTAC
Found at i:2138905 original size:26 final size:26
Alignment explanation
Indices: 2138868--2138920 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2138858 GTTGACTTAG
*
2138868 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
*
2138894 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATCCCCAATCTAA
2138920 G
1 G
2138921 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:2139489 original size:162 final size:161
Alignment explanation
Indices: 2139201--2139563 Score: 430
Period size: 162 Copynumber: 2.2 Consensus size: 161
2139191 TGCCTGTATG
* * *
2139201 CTCATTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCTTGTCTAAGCATATAGAGTTCATTC
1 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTC
* * * *
2139266 TCAGTCTAAGATCGGACCGGCAGCAACAAGCAGAGGGGACTGGGCTGATCCCCAGCTTGTGCAT-
66 CCAGTCTAAGATCAGACCGACAGCAACAAGCAGAGGGGACTGGACTGATCCCCAGCTTGTGCATC
*
2139330 TATGCCTCTCCGACCTGCTCAACACTCACACA
131 T-TGCCTCTCCGACCAGCTCAACACTCACACA
* *
2139362 CTCATTTCGTGGGTTTGACTTAGCCATACAGAGTTCATT-CTCAGTCTAAGCATATGGAGTTCAT
1 CTCATTTCGTGGG-TTGACTTAGGCATACAGAGTTCATTCCT-AGTCTAAGCATATAGAGTTCAT
* **
2139426 TCCCAGTCTAAGATCAGACCGACAGCAACACGCA-AGGGGGA-TCGGACTGATCTTC-GACTTGT
64 TCCCAGTCTAAGATCAGACCGACAGCAACAAGCAGA-GGGGACT-GGACTGATCCCCAG-CTTGT
* * * * * * **
2139488 GCATCTTGCCTTTCTGGCCAGCTGAGCACTCCCATG
126 GCATCTTGCCTCTCCGACCAGCTCAACACTCACACA
* *
2139524 CTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCC
1 CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCC
2139564 CGATCTTAGC
Statistics
Matches: 171, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
161 42 0.25
162 128 0.75
163 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (161 bp):
CTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATATAGAGTTCATTC
CCAGTCTAAGATCAGACCGACAGCAACAAGCAGAGGGGACTGGACTGATCCCCAGCTTGTGCATC
TTGCCTCTCCGACCAGCTCAACACTCACACA
Found at i:2139882 original size:45 final size:45
Alignment explanation
Indices: 2139831--2139991 Score: 119
Period size: 45 Copynumber: 3.6 Consensus size: 45
2139821 CCAGTAGTTG
* *
2139831 GCATGTGCCGATGGTGGTCAAGGCAACCACC-CACACCATGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACC-CCTCACACCAAGGCCCA
* * * * * * *
2139876 GCATGTGTCGATAGTGTTTGATGCAACCCCTCGCACCAAGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCCCTCACACCAAGGCCCA
* * * * ** *
2139921 TCTTGTGCCGATGGTGGTCGAGGCAATCGCTCGTACCACAGG-CCG
1 GCATGTGCCGATGGTGGTCGAGGCAACCCCTCACACCA-AGGCCCA
* * *
2139966 GCATGTGTCGATGGTGATCGGGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
2139992 TCGCTTGCGC
Statistics
Matches: 89, Mismatches: 25, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
44 2 0.02
45 84 0.94
46 3 0.03
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCCCTCACACCAAGGCCCA
Found at i:2140804 original size:26 final size:26
Alignment explanation
Indices: 2140768--2140818 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2140758 TGACTTAGGT
*
2140768 ATACGGAGTTCATCCCTAGTCTAAGC
1 ATACAGAGTTCATCCCTAGTCTAAGC
*
2140794 ATACAGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATCCCTAGTCTAAG
2140819 ATTGGATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATCCCTAGTCTAAGC
Found at i:2141754 original size:26 final size:26
Alignment explanation
Indices: 2141717--2141769 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2141707 GTTGACATAG
2141717 GCATACGAAGTTCATTC-CTAGTCTAA
1 GCATACGAAGTTCATTCTC-AGTCTAA
*
2141743 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCTCAGTCTAA
2141769 G
1 G
2141770 ATTAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCTCAGTCTAA
Found at i:2142546 original size:11 final size:11
Alignment explanation
Indices: 2142530--2142559 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
2142520 CCCGAGGCAC
2142530 CATCACCGAAG
1 CATCACCGAAG
2142541 CATCACCGAAG
1 CATCACCGAAG
2142552 CATCACCG
1 CATCACCG
2142560 GAGAACTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.33, C:0.40, G:0.17, T:0.10
Consensus pattern (11 bp):
CATCACCGAAG
Found at i:2143707 original size:26 final size:26
Alignment explanation
Indices: 2143677--2143726 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2143667 GTTGACTTAG
2143677 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2143703 GCATACGGAGTTCATTTCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
2143727 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2144152 original size:320 final size:322
Alignment explanation
Indices: 2143487--2144193 Score: 838
Period size: 320 Copynumber: 2.2 Consensus size: 322
2143477 CCGACGGAGT
* * * * *
2143487 GCCCGCACGCTCGTTTCGTTGGTTGGCTTAGACATACGAAGTTCATTCCATG-TCTAAGCCCTAA
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CGATCTAAGCCCTAA
* * * **** * * *
2143551 CTGGACCGAGGGTTGTGGCAGTGGGACTGACAGCATGTAGAGGGGGACCGGGCCGATCTCCGGCT
65 CCGGACCAAGAGTACCCGCAGTGGGACTGACAGCACGCAGAGGAGGACCGGGCCGATCTCCGGCT
** ** * *
2143616 TGCGCATTATGCCTCTTCGGTTGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCAT
130 TGCGCATTATGCCTCTTCGCCTGGCTCAACGACCGCACCCTCATTTCATGGGTTGACTTAGGCAT
** * * *
2143681 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTGAGATCGGACCAGTAGCAG
195 ACAAAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTTCCAGTCTAAGATCGGACCAGCAGCAG
* * * * * *
2143746 CACGTAGAGGGGGACCGGGTCGATCCTCGACTCGTGCGTCCTACCTTTTCGGCCTGTTGAGTC
260 CACGCAGAGGGGGACCGGGTCGATCCTCGACTCGCGCATCCTACCTTCTCAGCCTGTTCAGTC
* *
2143809 -CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCCAAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCTAAC
* * *
2143873 CGGGCCAAGAG-ACCCGCAGTGGGA-TCGACAGCACGCAGAGGAGGACTGGGCCGATCTCTGGCT
66 CGGACCAAGAGTACCCGCAGTGGGACT-GACAGCACGCAGAGGAGGACCGGGCCGATCTCCGGCT
* * * *
2143936 TGCGGATTATGCCTTTTCAGCCT-GCTCAACGACCGTACCCTCATTTCGTGGGTTGACTTAGGCA
130 TGCGCATTATGCCTCTTC-GCCTGGCTCAACGACCGCACCCTCATTTCATGGGTTGACTTAGGCA
* * * *
2144000 TACAAAGTTCATTCCCAGTCTAAGCCCATGGAGTTCA-TTCCTATTCTAAGATCGGACCGGCAGC
194 TACAAAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTTCC-AGTCTAAGATCGGACCAGCAGC
* * * *
2144064 AGCACGCAGAGGGGGACCGGG-CTGATCTTCGGCTTGCGCATCCTGCC-TCTCTAGCCTGTTCAG
258 AGCACGCAGAGGGGGACCGGGTC-GATCCTCGACTCGCGCATCCTACCTTCTC-AGCCTGTTCAG
2144127 -C
321 TC
* *
2144128 GCCCGCACGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCGATCTAAGCCCTAAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCTAAC
2144193 C
66 C
2144194 AAACCAAGGG
Statistics
Matches: 325, Mismatches: 53, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
319 10 0.03
320 251 0.77
321 64 0.20
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (322 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCTAAC
CGGACCAAGAGTACCCGCAGTGGGACTGACAGCACGCAGAGGAGGACCGGGCCGATCTCCGGCTT
GCGCATTATGCCTCTTCGCCTGGCTCAACGACCGCACCCTCATTTCATGGGTTGACTTAGGCATA
CAAAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTTCCAGTCTAAGATCGGACCAGCAGCAGC
ACGCAGAGGGGGACCGGGTCGATCCTCGACTCGCGCATCCTACCTTCTCAGCCTGTTCAGTC
Found at i:2144159 original size:162 final size:159
Alignment explanation
Indices: 2143589--2144188 Score: 509
Period size: 162 Copynumber: 3.7 Consensus size: 159
2143579 GACAGCATGT
* * * ** *
2143589 AGAGGGGGACCGGGCCGATCTCCGGCTTGCGCATTATGCCTCTTC-GGTTGGCTCAGTGCCCGCA
1 AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTCAGCCT-GCTCAGCGCCCGCA
**
2143653 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCA
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGA-TCTAAGCCCACGGAGTTCA
* * *
2143717 TTTCCAGTCTGAGATCGGACCAGTAGCAGCACGT
129 -TTCCACTCTAAGATCGGACC-G-AGCAGCACGC
* * * * * * * * * * *
2143751 AGAGGGGGACCGGGTCGATCCTCGACTCGTGCGTCCTACCTTTTCGGCCTGTTGAGTC-CCCGCA
1 AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTCAGCCTGCTCAG-CGCCCGCA
* *
2143815 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCCAACCGG-G-C
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAG-CCC-A-CGGAGTT
**** * ** * *
2143878 CAAGAGACCCGCAG-TGGGATCGA-CAGCACGC
127 CATTCCACTCTAAGATCGGACCGAGCAGCACGC
* * * * * * *
2143909 AGAGGAGGACTGGGCCGATC-TCTGGCTTGCGGATTATGCCTTTTCAGCCTGCTCAACGACCGTA
1 AGAGGGGGACCGGGCCGATCTTC-GGCTTGCGCATCATGCCTTTTCAGCCTGCTCAGCGCCCGCA
* * ** *
2143973 CCCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCC-AGTCTAAGCCCATGGAGTTCA
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGA-TCTAAGCCCACGGAGTTCA
*
2144037 TTCCTATTCTAAGATCGGACCGGCAGCAGCACGC
129 TTCC-ACTCTAAGATCGGACC-G-AGCAGCACGC
* * * *
2144071 AGAGGGGGACCGGGCTGATCTTCGGCTTGCGCATCCTGCC-TCTCTAGCCTGTTCAGCGCCCGCA
1 AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTC-AGCCTGCTCAGCGCCCGCA
** * *
2144135 CGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCGATCTAAGCCC
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCC
2144189 TAACCAAACC
Statistics
Matches: 337, Mismatches: 82, Indels: 38
0.74 0.18 0.08
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 9 0.03
158 97 0.29
159 6 0.02
160 2 0.01
161 9 0.03
162 196 0.58
163 9 0.03
164 2 0.01
165 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (159 bp):
AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTCAGCCTGCTCAGCGCCCGCAC
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCACGGAGTTCATT
CCACTCTAAGATCGGACCGAGCAGCACGC
Found at i:2145421 original size:26 final size:26
Alignment explanation
Indices: 2145391--2145440 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2145381 GTTGACTTAG
2145391 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2145417 GCATACGGAGTTCATTTCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
2145441 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2145866 original size:320 final size:322
Alignment explanation
Indices: 2145201--2145907 Score: 831
Period size: 320 Copynumber: 2.2 Consensus size: 322
2145191 CCGACGGAGT
* * * * *
2145201 GCCCGCACGCTCGTTTCGTTGGTTGGCTTAGACATACGAAGTTCATTCCATG-TCTAAGCCCTAA
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CGATCTAAGCCCTAA
* * * **** * *
2145265 CTGGACCGAGGGTTGTGGCAGTGGGACTGACAGCATGTAGAGAGGGACCGGGCCGATCTCCGGCT
65 CCGGACCAAGAGTACCCGCAGTGGGACTGACAGCACGCAGAGAGGGACCGGGCCGATCTCCGGCT
** ** * *
2145330 TGCGCATTATGCCTCTTCGGTTGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCAT
130 TGCGCATTATGCCTCTTCGCCTGGCTCAACGACCGCACCCTCATTTCATGGGTTGACTTAGGCAT
** * * *
2145395 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTGAGATCGGACCAGTAGCAG
195 ACAAAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTTCCAGTCTAAGATCGGACCAGCAGCAG
* * * * * *
2145460 CACGTAGAGGGGGACCGGGTCGATCCTCGACTCGTGCGTCCTACCTTTTCGGCCTGTTGAGTC
260 CACGCAGAGGGGGACCGGGTCGATCCTCGACTCGCGCATCCTACCTTCTCAGCCTGTTCAGTC
* *
2145523 -CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCCAAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCTAAC
* * *
2145587 CGGGCCAAGAG-ACCCGCAGTGGGA-TCGACAGCACGCAGAG-GAGGACTGGGCCGATCTCTGGC
66 CGGACCAAGAGTACCCGCAGTGGGACT-GACAGCACGCAGAGAG-GGACCGGGCCGATCTCCGGC
* * * *
2145649 TTGCGGATTATGCCTTTTCAGCCT-GCTCAACGACCGTACCCTCATTTCGTGGGTTGACTTAGGC
129 TTGCGCATTATGCCTCTTC-GCCTGGCTCAACGACCGCACCCTCATTTCATGGGTTGACTTAGGC
* * * *
2145713 ATACAAAGTTCATTCCCAGTCTAAGCCCATGGAGTTCA-TTCCTATTCTAAGATCGGACCGGCAG
193 ATACAAAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTTCC-AGTCTAAGATCGGACCAGCAG
* * * *
2145777 CAGCACGCAGAGGGGGACCGGG-CTGATCTTCGGCTTGCGCATCCTGCC-TCTCTAGCCTGTTCA
257 CAGCACGCAGAGGGGGACCGGGTC-GATCCTCGACTCGCGCATCCTACCTTCTC-AGCCTGTTCA
2145840 G-C
320 GTC
* *
2145842 GCCCGCACGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCGATCTAAGCCCTAAC
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCTAAC
2145907 C
66 C
2145908 AAACCAAGGG
Statistics
Matches: 325, Mismatches: 52, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
319 11 0.03
320 250 0.77
321 64 0.20
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (322 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCTAAC
CGGACCAAGAGTACCCGCAGTGGGACTGACAGCACGCAGAGAGGGACCGGGCCGATCTCCGGCTT
GCGCATTATGCCTCTTCGCCTGGCTCAACGACCGCACCCTCATTTCATGGGTTGACTTAGGCATA
CAAAGTTCATTCCCAGTCTAAGCACACGGAGTTCATTTCCAGTCTAAGATCGGACCAGCAGCAGC
ACGCAGAGGGGGACCGGGTCGATCCTCGACTCGCGCATCCTACCTTCTCAGCCTGTTCAGTC
Found at i:2145873 original size:162 final size:159
Alignment explanation
Indices: 2145303--2145902 Score: 500
Period size: 162 Copynumber: 3.7 Consensus size: 159
2145293 GACAGCATGT
* * * * ** *
2145303 AGAGAGGGACCGGGCCGATCTCCGGCTTGCGCATTATGCCTCTTC-GGTTGGCTCAGTGCCCGCA
1 AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTCAGCCT-GCTCAGCGCCCGCA
**
2145367 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCA
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGA-TCTAAGCCCACGGAGTTCA
* * *
2145431 TTTCCAGTCTGAGATCGGACCAGTAGCAGCACGT
129 -TTCCACTCTAAGATCGGACC-G-AGCAGCACGC
* * * * * * * * * * *
2145465 AGAGGGGGACCGGGTCGATCCTCGACTCGTGCGTCCTACCTTTTCGGCCTGTTGAGTC-CCCGCA
1 AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTCAGCCTGCTCAG-CGCCCGCA
* *
2145529 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCCAACCGG-G-C
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAG-CCC-A-CGGAGTT
**** * ** * *
2145592 CAAGAGACCCGCAG-TGGGATCGA-CAGCACGC
127 CATTCCACTCTAAGATCGGACCGAGCAGCACGC
* * * * * * *
2145623 AGAGGAGGACTGGGCCGATC-TCTGGCTTGCGGATTATGCCTTTTCAGCCTGCTCAACGACCGTA
1 AGAGGGGGACCGGGCCGATCTTC-GGCTTGCGCATCATGCCTTTTCAGCCTGCTCAGCGCCCGCA
* * ** *
2145687 CCCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCC-AGTCTAAGCCCATGGAGTTCA
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGA-TCTAAGCCCACGGAGTTCA
*
2145751 TTCCTATTCTAAGATCGGACCGGCAGCAGCACGC
129 TTCC-ACTCTAAGATCGGACC-G-AGCAGCACGC
* * * *
2145785 AGAGGGGGACCGGGCTGATCTTCGGCTTGCGCATCCTGCC-TCTCTAGCCTGTTCAGCGCCCGCA
1 AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTC-AGCCTGCTCAGCGCCCGCA
** * *
2145849 CGCTCGGTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCGATCTAAGCCC
65 CGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCC
2145903 TAACCAAACC
Statistics
Matches: 336, Mismatches: 83, Indels: 38
0.74 0.18 0.08
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 9 0.03
158 97 0.29
159 6 0.02
160 2 0.01
161 9 0.03
162 195 0.58
163 9 0.03
164 2 0.01
165 3 0.01
ACGTcount: A:0.19, C:0.29, G:0.28, T:0.24
Consensus pattern (159 bp):
AGAGGGGGACCGGGCCGATCTTCGGCTTGCGCATCATGCCTTTTCAGCCTGCTCAGCGCCCGCAC
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCACGGAGTTCATT
CCACTCTAAGATCGGACCGAGCAGCACGC
Found at i:2147097 original size:45 final size:45
Alignment explanation
Indices: 2147039--2147208 Score: 128
Period size: 45 Copynumber: 3.8 Consensus size: 45
2147029 TGGTCGACGT
* * * *
2147039 AACCGCCCACACCATGACCCAGCATGTGCCGATGGTGTTCGAAGC
1 AACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAAGC
* * * * * * * *
2147084 AACCGCTCGCACCAAGGGCCATCTTCTGCTGATGGTGGTCGAGGC
1 AACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAAGC
* * * *
2147129 AATCGCTCGCACCAAGGGCC-GACATGTGCTGATGGTGATC-AAGGC
1 AACCGCCCGCACCAAGGCCCAG-CATGTGCCGATGGTGATCGAA-GC
* * * *
2147174 AACCACCCGCACCAGGGCCCAGCTTGTTCCGATGG
1 AACCGCCCGCACCAAGGCCCAGCATGTGCCGATGG
2147209 CGGTCGAGGC
Statistics
Matches: 97, Mismatches: 25, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
44 1 0.01
45 95 0.98
46 1 0.01
ACGTcount: A:0.22, C:0.33, G:0.28, T:0.17
Consensus pattern (45 bp):
AACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAAGC
Found at i:2147233 original size:90 final size:90
Alignment explanation
Indices: 2147061--2147233 Score: 199
Period size: 90 Copynumber: 1.9 Consensus size: 90
2147051 CATGACCCAG
* * * * * *
2147061 CATGTGCCGATGGTGTTCGAAGCAACCGCTCGCACCAAGGGCCATCTTCTGCTGATGGTGGTCGA
1 CATGTGCCGATGGTGATCGAAGCAACCACCCGCACCAAGGGCCAGCTTCTGCCGATGGCGGTCGA
*
2147126 GGCAATCGCTCGCACCAAGGGCCGA
66 GGCAATCGCTCACACCAAGGGCCGA
* * *
2147151 CATGTGCTGATGGTGATC-AAGGCAACCACCCGCACC-AGGGCCCAGCTTGTTCCGATGGCGGTC
1 CATGTGCCGATGGTGATCGAA-GCAACCACCCGCACCAAGGG-CCAGCTTCTGCCGATGGCGGTC
*
2147214 GAGGCAAGT-GCTCATACCAA
64 GAGGCAA-TCGCTCACACCAA
2147234 AGGGTAGCCT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
89 6 0.09
90 62 0.90
91 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.18
Consensus pattern (90 bp):
CATGTGCCGATGGTGATCGAAGCAACCACCCGCACCAAGGGCCAGCTTCTGCCGATGGCGGTCGA
GGCAATCGCTCACACCAAGGGCCGA
Found at i:2148388 original size:26 final size:26
Alignment explanation
Indices: 2148358--2148410 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2148348 GTTGACTTAG
*
2148358 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2148384 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2148410 G
1 G
2148411 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2151097 original size:25 final size:26
Alignment explanation
Indices: 2151069--2151120 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2151059 GTTGACTTAT
2151069 GCATACA-AGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
2151094 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2151120 G
1 G
2151121 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2157851 original size:45 final size:45
Alignment explanation
Indices: 2157781--2157973 Score: 215
Period size: 45 Copynumber: 4.3 Consensus size: 45
2157771 CGAGGCTCGA
*
2157781 CATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
* * * * *
2157826 CATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
* * * * * * * *
2157871 CTTGTGCCAATGGTGGTCAAGGCAATCGCCCGCACAAAGGGCCGG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
* * * *
2157916 CATGTGCCGATGGTGGTCGAGGTAGCCGCCTGCACCACCGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
*
2157961 CTTGTGCCGATGG
1 CATGTGCCGATGG
2157974 CGATCAAGGC
Statistics
Matches: 119, Mismatches: 29, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 119 1.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
Found at i:2157945 original size:90 final size:90
Alignment explanation
Indices: 2157790--2158025 Score: 251
Period size: 90 Copynumber: 2.6 Consensus size: 90
2157780 ACATGTACCG
* * * * * * *
2157790 ATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAACCGC
1 ATGGTGGTCAAGGCAATCGCCCGCACAAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGC
** * *
2157855 CCGCACCAGGGGCCATCTTGTGCCA
66 CCGCACCACCGCCCAGCTTGTGCCA
* * *
2157880 ATGGTGGTCAAGGCAATCGCCCGCACAAAGGGCCGGCATGTGCCGATGGTGGTCGAGGTAGCCGC
1 ATGGTGGTCAAGGCAATCGCCCGCACAAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGC
* *
2157945 CTGCACCACCGCCCAGCTTGTGCCG
66 CCGCACCACCGCCCAGCTTGTGCCA
* * * * *
2157970 ATGGCGATCAAGGCAAGT-GCCCGTACCAAAGGG-CAGCCTGTGCCGATGTTGGTCGA
1 ATGGTGGTCAAGGCAA-TCGCCCGCA-CAAAGGGCCAGCATGTGCCGATGGTGGTCGA
2158026 TGCATATGCC
Statistics
Matches: 122, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
90 114 0.93
91 8 0.07
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.16
Consensus pattern (90 bp):
ATGGTGGTCAAGGCAATCGCCCGCACAAAGGGCCAGCATGTGCCGATGGTGGTCGAGGCAACCGC
CCGCACCACCGCCCAGCTTGTGCCA
Found at i:2158023 original size:135 final size:135
Alignment explanation
Indices: 2157781--2158023 Score: 308
Period size: 135 Copynumber: 1.8 Consensus size: 135
2157771 CGAGGCTCGA
* * * *
2157781 CATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGA
1 CATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCACCGCCCAGCATGTGCCGATGGCGATCAA
* * * *
2157846 TGCAACCGCCCGCACCAGGGGCCATCTTGTGCCAATGGTGGTCAAGGCAATCGCCCGCACAAAGG
66 GGCAACCGCCCGCACCAAGGGCCAGCCTGTGCCAATGGTGGTCAAGGCAATCGCCCGCACAAAGG
2157911 GCCGG
131 GCCGG
* * * * *
2157916 CATGTGCCGATGGTGGTCGAGGTAGCCGCCTGCACCACCGCCCAGCTTGTGCCGATGGCGATCAA
1 CATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCACCGCCCAGCATGTGCCGATGGCGATCAA
** * * *
2157981 GGCAAGTGCCCGTACCAAAGGG-CAGCCTGTGCCGATGTTGGTC
66 GGCAACCGCCCGCACC-AAGGGCCAGCCTGTGCCAATGGTGGTC
2158024 GATGCATATG
Statistics
Matches: 89, Mismatches: 18, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
135 85 0.96
136 4 0.04
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.16
Consensus pattern (135 bp):
CATGTACCGATGGTGGTCGAGGCAACCGCCCGCACCACCGCCCAGCATGTGCCGATGGCGATCAA
GGCAACCGCCCGCACCAAGGGCCAGCCTGTGCCAATGGTGGTCAAGGCAATCGCCCGCACAAAGG
GCCGG
Found at i:2158961 original size:26 final size:26
Alignment explanation
Indices: 2158925--2158976 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2158915 TTGACTTAGT
2158925 TATACGGAGTTCATCCCCAGTCTAAG
1 TATACGGAGTTCATCCCCAGTCTAAG
*
2158951 TATACGGAGTTCATTCCCAGTCTAAG
1 TATACGGAGTTCATCCCCAGTCTAAG
2158977 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
TATACGGAGTTCATCCCCAGTCTAAG
Found at i:2162200 original size:9 final size:9
Alignment explanation
Indices: 2162186--2162211 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
2162176 GTCACCCTTT
2162186 AAGGTGCTA
1 AAGGTGCTA
2162195 AAGGTGCTA
1 AAGGTGCTA
2162204 AAGGTGCT
1 AAGGTGCT
2162212 GTAGACCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.12, G:0.35, T:0.23
Consensus pattern (9 bp):
AAGGTGCTA
Found at i:2164493 original size:45 final size:45
Alignment explanation
Indices: 2164352--2164553 Score: 165
Period size: 45 Copynumber: 4.5 Consensus size: 45
2164342 CGAGGCTCGA
* * ** *
2164352 CATGTGTCGATGGTGGTCGAGGTAA-CTGCCCGCACCACAGCCCAA
1 CATGTGCCGATGGTGGTCGAGGCAATC-GCCCGCACCAGGGCCCAG
* * * * * * * * *
2164397 CATGTACCGATGGTGTTCGATGCAACCGCCCGTATCGGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCCAG
* * * *
2164442 CTTGTGCCGATGGTGGTCGAGGCAATCGCTCGCACCAAGGG-TCGG
1 CATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACC-AGGGCCCAG
* **
2164487 CATGTGCCAATGGTCATCGAGGCAATCGCCCGCACCAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCCAG
* *
2164532 CTTGTGCCGATGGCGGTCGAGG
1 CATGTGCCGATGGTGGTCGAGG
2164554 TAAGTGCCCG
Statistics
Matches: 118, Mismatches: 36, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
44 4 0.03
45 110 0.93
46 4 0.03
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCCAG
Found at i:2164583 original size:90 final size:89
Alignment explanation
Indices: 2164354--2164588 Score: 229
Period size: 90 Copynumber: 2.6 Consensus size: 89
2164344 AGGCTCGACA
* * ** * * ** *
2164354 TGTGTCGATGGTGGTCGAGGTAACTGCCCGCACCACAGCCCAACATGTACCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGTAA-TGCCCGCACCAAAGGGCAACATGTGCCAATGGTCATCGAGG
* * * * *
2164419 CAACCGCCCGTATCGGGGGCCATCT
65 CAACCGCCCGCACCAGGGCCCAGCT
* * **
2164444 TGTGCCGATGGTGGTCGAGGCAATCGCTCGCACC-AAGGGTCGGCATGTGCCAATGGTCATCGAG
1 TGTGCCGATGGTGGTCGAGGTAAT-GCCCGCACCAAAGGG-CAACATGTGCCAATGGTCATCGAG
*
2164508 GCAATCGCCCGCACCAGGGCCCAGCT
64 GCAACCGCCCGCACCAGGGCCCAGCT
* * *
2164534 TGTGCCGATGGCGGTCGAGGTAAGTGCCCGTACCAAAGGGCAACCTGTGCCAATG
1 TGTGCCGATGGTGGTCGAGGTAA-TGCCCGCACCAAAGGGCAACATGTGCCAATG
2164589 ATGCTCGATG
Statistics
Matches: 115, Mismatches: 26, Indels: 8
0.77 0.17 0.05
Matches are distributed among these distances:
89 3 0.03
90 106 0.92
91 6 0.05
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (89 bp):
TGTGCCGATGGTGGTCGAGGTAATGCCCGCACCAAAGGGCAACATGTGCCAATGGTCATCGAGGC
AACCGCCCGCACCAGGGCCCAGCT
Found at i:2166242 original size:45 final size:45
Alignment explanation
Indices: 2166169--2166412 Score: 192
Period size: 45 Copynumber: 5.4 Consensus size: 45
2166159 GATCGGGGCT
*
2166169 CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGTACCACA-GCC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCA-AGGCC
* * *
2166214 CAGCATGTGCCGATGGTGTTCGATGCAACCGCCCGTACCAAGGGC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGCC
* * * ** **
2166259 CATCTTGTGCCGATGGTGGTCGAGGTAATTGCCCGTACCAAGGGT
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGCC
* * * * * * *
2166304 C-GACATGTGCTGATGGTGATCGAGGCAACCACCCGCACTAGGGTC
1 CAG-CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGCC
* * * * *
2166349 CAGCTTGTGCCGATGGCGATCAAGGCAA--GTCCCGTACCAAAGG-G
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCG-CCCGTACC-AAGGCC
* *
2166393 CAGCCTGTGCCGATGATGGT
1 CAGCATGTGCCGATGGTGGT
2166413 TGATGCATGT
Statistics
Matches: 156, Mismatches: 38, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
44 23 0.15
45 132 0.85
46 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.19
Consensus pattern (45 bp):
CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAAGGCC
Found at i:2166332 original size:90 final size:90
Alignment explanation
Indices: 2166169--2166407 Score: 218
Period size: 90 Copynumber: 2.7 Consensus size: 90
2166159 GATCGGGGCT
* * *
2166169 CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGTACCACAGCCCAGCATGTGCCGATGGTGTT
1 CAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACAGCCCAGCATGTGCCGATGGTGAT
* * *
2166234 CGATGCAACCGCCCGTACCAAGGG-C
66 CGAGGCAACCACCCGCA-CAAGGGTC
* * ** ** *
2166259 CATCTTGTGCCGATGGTGGTCGAGGTAATTGCCCGTACCA-AGGGTC-GACATGTGCTGATGGTG
1 CAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACA-GCCCAG-CATGTGCCGATGGTG
*
2166322 ATCGAGGCAACCACCCGCACTAGGGTC
64 ATCGAGGCAACCACCCGCACAAGGGTC
* * * * ** *
2166349 CAGCTTGTGCCGATGGCGATCAAGGCAA--GTCCCGTACCAAAGGGCAGCCTGTGCCGATG
1 CAGCTTGTGCCGATGGTGGTCGAGGCAACCG-CCCGTACCACAGCCCAGCATGTGCCGATG
2166408 ATGGTTGATG
Statistics
Matches: 121, Mismatches: 22, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
88 1 0.01
89 29 0.24
90 91 0.75
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.19
Consensus pattern (90 bp):
CAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACAGCCCAGCATGTGCCGATGGTGAT
CGAGGCAACCACCCGCACAAGGGTC
Found at i:2168059 original size:26 final size:26
Alignment explanation
Indices: 2168030--2168080 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2168020 GTTGACTTAG
2168030 GCATACGGAGCTCATTCCCAGTCTAC
1 GCATACGGAGCTCATTCCCAGTCTAC
* *
2168056 GCATACGGAGTTTATTCCCAGTCTA
1 GCATACGGAGCTCATTCCCAGTCTA
2168081 AGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAC
Found at i:2168668 original size:45 final size:44
Alignment explanation
Indices: 2168525--2168720 Score: 139
Period size: 45 Copynumber: 4.4 Consensus size: 44
2168515 GGGCTCGGCA
* * * * *
2168525 TGTGCCGATAGTGGTCGAGACAACTGCCCGCACCAAGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACTGCCC-TACCAGGGCCCAGCT
* * * * * * *
2168570 TGTGCCAATGGTGTTTGATGCAACCG-CCTGCACAGGGCCCA-TT
1 TGTGCCGATGGTGGTCGAGGCAACTGCCCTAC-CAGGGCCCAGCT
2168613 TGTGCCGATGGTGGTCGAGGCAACTGCCCATACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACTGCCC-TACCAGGGCCCAGCT
* * * * * *
2168658 TGTGTCGATGGCGGTCGAGGTAAGTGCTCGTACCAAAGGG--CAGCC
1 TGTGCCGATGGTGGTCGAGGCAACTGC-CCTACC--AGGGCCCAGCT
*
2168703 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2168721 TGCATGTGCC
Statistics
Matches: 116, Mismatches: 28, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
43 22 0.19
44 21 0.18
45 68 0.59
46 1 0.01
47 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACTGCCCTACCAGGGCCCAGCT
Found at i:2169848 original size:45 final size:45
Alignment explanation
Indices: 2169775--2169968 Score: 178
Period size: 45 Copynumber: 4.3 Consensus size: 45
2169765 CCGGGGCTCG
* *
2169775 GCATGTGTCGATGGTAG-TCGAAGG-AACCACCCGCACCACGGCCCA
1 GCATGTGCCGATGGT-GTTCG-AGGCAACCACCCGCACCAAGGCCCA
* * *
2169820 GCATGTGCTGATGGTGTTCGATGCAACCACCCGCACCAAGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCA
* * * * * * ** *
2169865 TCTTGTGCCGATGGTGGTCAAGGCAATCGCCCGCACCAAGGGTCG
1 GCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCA
* *
2169910 GCATGTGCCGATGGTGATT-GAGGCAACCACCTGCACCAGGGCCCA
1 GCATGTGCCGATGGTG-TTCGAGGCAACCACCCGCACCAAGGCCCA
* *
2169955 GCTTGTCCCGATGG
1 GCATGTGCCGATGG
2169969 CAGTCAAAGG
Statistics
Matches: 118, Mismatches: 28, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
44 3 0.03
45 114 0.97
46 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (45 bp):
GCATGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCA
Found at i:2170632 original size:26 final size:26
Alignment explanation
Indices: 2170595--2170699 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
2170585 GTTGACTTAG
*
2170595 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2170621 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2170647 GTATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2170673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2170699 G
1 G
2170700 ATCAGACCGA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2171915 original size:26 final size:26
Alignment explanation
Indices: 2171865--2171917 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2171855 GTTGACTTAG
*
2171865 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
2171891 GCATATGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
2171917 G
1 G
2171918 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:2172256 original size:26 final size:25
Alignment explanation
Indices: 2172222--2172271 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
2172212 TTGACTTAGG
2172222 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATT-CCAGTCTAAA
*
2172248 CATATGGAGTTCATTCCAGTCTAA
1 CATACGGAGTTCATTCCAGTCTAA
2172272 GATCAGACAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (25 bp):
CATACGGAGTTCATTCCAGTCTAAA
Found at i:2172815 original size:45 final size:45
Alignment explanation
Indices: 2172712--2172917 Score: 164
Period size: 45 Copynumber: 4.6 Consensus size: 45
2172702 TTGGGGTGCG
* * * *
2172712 ACATGTGCCGTTGGTGGTCGAGGCAACCACCCGCAGCATGGCCCA
1 ACATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * *
2172757 ACATGTG-CTGATGGTGCTCGATGCAACCACCCGCACCAGGGGCCA
1 ACATGTGTC-GATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * * ** * * *
2172802 TCTTGTGTCGATGGTGGTTGAGGCAATCACCCATACCAAAGG-TCG
1 ACATGTGTCGATGGTGGTCGAGGCAACCACCCGCACC-AGGGCCCA
* * * *
2172847 TCATGTGTCGATGGTGATCGAGGCAACCGCCCGCACTAGGGCCCA
1 ACATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
* * * *
2172892 ACTTGTGCCGATGGCGATCGAGGCAA
1 ACATGTGTCGATGGTGGTCGAGGCAA
2172918 GTGCCCGTAC
Statistics
Matches: 125, Mismatches: 32, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
44 4 0.03
45 117 0.94
46 4 0.03
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
ACATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCA
Found at i:2174789 original size:45 final size:45
Alignment explanation
Indices: 2174665--2174822 Score: 156
Period size: 45 Copynumber: 3.5 Consensus size: 45
2174655 GGGCTCGACA
* * * *
2174665 TGTGCTGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCTAGGCAACCGCCCACACCAGGGCCCAGCT
* * * * * * * *
2174710 TGTGTCGATGGT-TTTTGATGCAATCGGCCACACCAGGGGCAAGCT
1 TGTGCCGATGGTGGTCT-AGGCAACCGCCCACACCAGGGCCCAGCT
*
2174755 TGTGCCGATGGTGGTCTAGGCAACCGCCCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCTAGGCAACCGCCCACACCAGGGCCCAGCT
* * *
2174800 TGTGTCGATGGCGGTCAAGGCAA
1 TGTGCCGATGGTGGTCTAGGCAA
2174823 GTGCCTGTAC
Statistics
Matches: 87, Mismatches: 24, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
44 1 0.01
45 84 0.97
46 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCTAGGCAACCGCCCACACCAGGGCCCAGCT
Found at i:2176620 original size:45 final size:45
Alignment explanation
Indices: 2176556--2176728 Score: 222
Period size: 45 Copynumber: 3.8 Consensus size: 45
2176546 TTCGGGGGCC
* *
2176556 CACCAGGGCTC-GACATGTGCCGATGATGGTCGAGGCAACCGCCTG
1 CACCAGGGCCCAG-CATGTGCCGATGGTGGTCGAGGCAACCGCCTG
* * * *
2176601 CACCACGGCCCAGCATGTGCCGATGGTGTTTGATGCAACCGCCTG
1 CACCAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTG
* * * *
2176646 CACCAGGGGCCATCTTGTGCCGATGGTGGTCAAGGCAACCGCCTG
1 CACCAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTG
* *
2176691 CACCAGGGCCCAACTTGTGCCGATGGTGGTCGAGGCAA
1 CACCAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAA
2176729 GTGCCCGTAC
Statistics
Matches: 110, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 109 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
CACCAGGGCCCAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTG
Found at i:2176755 original size:90 final size:90
Alignment explanation
Indices: 2176571--2176766 Score: 241
Period size: 90 Copynumber: 2.2 Consensus size: 90
2176561 GGGCTCGACA
* * * * *
2176571 TGTGCCGATGATGGTCGAGGCAACCGCCTGCACCACGGCCCAGCATGTGCCGATGGTGTTTGATG
1 TGTGCCGATGATGGTCAAGGCAACCGCCTGCACCACGGCCCAACATGTGCCGATGGTGGTCGAGG
* * * *
2176636 CAACCGCCTGCACCAGGGGCCATCT
66 CAACCGCCCGCACCAAGGGCCAGCC
* * *
2176661 TGTGCCGATGGTGGTCAAGGCAACCGCCTGCACCAGGGCCCAACTTGTGCCGATGGTGGTCGAGG
1 TGTGCCGATGATGGTCAAGGCAACCGCCTGCACCACGGCCCAACATGTGCCGATGGTGGTCGAGG
** *
2176726 CAAGTGCCCGTACCAAAGGG-CAGCC
66 CAACCGCCCGCACC-AAGGGCCAGCC
2176751 TGTGCCGATGATGGTC
1 TGTGCCGATGATGGTC
2176767 GATGCATGTG
Statistics
Matches: 89, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
90 85 0.96
91 4 0.04
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGATGGTCAAGGCAACCGCCTGCACCACGGCCCAACATGTGCCGATGGTGGTCGAGG
CAACCGCCCGCACCAAGGGCCAGCC
Found at i:2177705 original size:26 final size:26
Alignment explanation
Indices: 2177669--2177720 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2177659 GTTGACTTAG
2177669 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
2177695 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2177721 AATGGGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2178185 original size:136 final size:136
Alignment explanation
Indices: 2177931--2178186 Score: 343
Period size: 136 Copynumber: 1.9 Consensus size: 136
2177921 AGACTAATAG
* * *
2177931 CACGCAGAGGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACCGGTTCAACGCC
1 CACGCAGAGAGGGATCAGGCCGATCCTCGACTTACGCATCATGCCTCTCCGACCGGTTCAACGCC
* * *
2177996 TGCACGCTCATTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGAACTGA
66 TGCACACTCATTTCATAGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGATCGAACTGA
2178061 CAGCGA
131 CAGCGA
* * * * * * **
2178067 CACGCAGAGAGGGATCAGGCTGATCCTTGACTTACGCATCCTGCCTCTCTGGCCGGTTGAGTG-C
1 CACGCAGAGAGGGATCAGGCCGATCCTCGACTTACGCATCATGCCTCTCCGACCGGTTCAACGCC
* * *
2178131 TCGTACACTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATCCCCATTCTAAG
66 T-GCACACTCATTTCATAGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAG
2178187 CATACAAAGT
Statistics
Matches: 102, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
135 2 0.02
136 100 0.98
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (136 bp):
CACGCAGAGAGGGATCAGGCCGATCCTCGACTTACGCATCATGCCTCTCCGACCGGTTCAACGCC
TGCACACTCATTTCATAGGTTGACTTAGGCATATGGAGTTCATCCCCAGTCTAAGATCGAACTGA
CAGCGA
Found at i:2178581 original size:491 final size:491
Alignment explanation
Indices: 2177598--2178678 Score: 1384
Period size: 491 Copynumber: 2.2 Consensus size: 491
2177588 AGACTGGGTC
* ** * * *
2177598 GATCCTTGACTTGCGCATCCTACCTCT-TGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTT
1 GATCCTTGACTTACGCATCCTACCTCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTT
* * **
2177662 GACTTAGGCATACGGAGTTCATCCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATGGG
66 GACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATGGG
* * * *
2177727 ATCGGATCGAGGGTTACGACTGCAGGACCAGCAGTAGGATCGACAGCACACAGGGGGGACCGGGT
131 ATCGGATCGAGGGTTACAACAGCAGGACCAGCAGTAGGATCGACAGCACACAGGGGGGACCAGGC
* * * * *
2177792 CGATCCTCAACTTACGCATTCTACCTCTCCGGTTGGCTGAGTGCCCGCACGCTCTTTTCGTGGGT
196 CGATCCCCAACTTACGCATTCTACCTCCCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
*
2177857 TGGCTTAGGCATACGGAGTTCATTCCATTTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGGGA
261 TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGGGA
* * * * *
2177922 GACTAATAGCACGCAGAGGGGGATCGGGCCGATCCTCGACTTACGCATTATGCCTCTCCGACCGG
326 GACTAATAGCACACAGAGGGGGATCGAGCCGATCCCCAACTTACGCATTATGCCTCTACGACCGG
* * * *
2177987 TTCAACGCCTGCACGCTCATTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGA
391 CTCAACGCCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* *
2178052 TCGAACTGACAGCGACACGCAGAGAGGGATCAGGCT
456 TCGAACCGACAGCGACACGCAGAGAGGGACCAGGCT
* * * * *
2178088 GATCCTTGACTTACGCATCCTGCCTCTCTGGCCGGTTGAGTGCTCGTACACTCATTTCATGGGTT
1 GATCCTTGACTTACGCATCCTACCTCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTT
* *
2178153 GACTTAGGCATATGGAGTTCATCCCCATTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATGGG
66 GACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATGGG
* * * **
2178218 A-CAGGATCGAGGGTTGCAACAGTAGGACCAGCTGTAGGATCGACAGCACGTAGGGGGGACCAGG
131 ATC-GGATCGAGGGTTACAACAGCAGGACCAGCAGTAGGATCGACAGCACACAGGGGGGACCAGG
** ** * *
2178282 CCGATCCCCCGGCTTGTGCATTCTGCCTCCCCGATCGGCTGAGTGCCTGCACGCTCATTTCGTGG
195 CCGAT-CCCCAACTTACGCATTCTACCTCCCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGG
* * * *
2178347 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCTAGTTGGGCCGAGGGTTGTGGCAGT
259 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAG-
* * * * *
2178412 GG-GA-TCGATAGCACACAGAGGGGGATCGAGTCGATCCCCAACTTGCGCATTATTCCTCTACGC
323 GGAGACT-AATAGCACACAGAGGGGGATCGAGCCGATCCCCAACTTACGCATTATGCCTCTACGA
* * * *
2178475 CCGGCTCAGCGCCCGCACACT-TTTTCGTTGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
387 CCGGCTCAACGCCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** * * *
2178539 AAGATCGAACCGGTAGC-AGCATGCAGAGGGGGACCGGGCT
452 AAGATCGAACCGACAGCGA-CACGCAGAGAGGGACCAGGCT
* * * * * *
2178579 GATCCTCGGCTTATGCATCCTACCTCTCCGGTCGGTTGAGTGCCCGCACACTTGTTTCGTGGGTT
1 GATCCTTGACTTACGCATCCTACCTCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTT
* *
2178644 GACTTAGGCATACAGAGTTCATTCCC-TATCTAAGC
66 GACTTAGGCATACGGAGTTCATCCCCAT-TCTAAGC
2178679 CCCAACCAGA
Statistics
Matches: 503, Mismatches: 81, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
490 28 0.06
491 300 0.60
492 173 0.34
493 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (491 bp):
GATCCTTGACTTACGCATCCTACCTCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATCCCCATTCTAAGCATACAAAGTTCATTCCCAGTCTAAAATGGG
ATCGGATCGAGGGTTACAACAGCAGGACCAGCAGTAGGATCGACAGCACACAGGGGGGACCAGGC
CGATCCCCAACTTACGCATTCTACCTCCCCGATCGGCTGAGTGCCCGCACGCTCATTTCGTGGGT
TGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCAGGGA
GACTAATAGCACACAGAGGGGGATCGAGCCGATCCCCAACTTACGCATTATGCCTCTACGACCGG
CTCAACGCCCGCACACTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TCGAACCGACAGCGACACGCAGAGAGGGACCAGGCT
Found at i:2179882 original size:25 final size:26
Alignment explanation
Indices: 2179853--2179904 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
2179843 CTTGACTTAG
*
2179853 GCATACGGAGTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
2179878 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
2179904 G
1 G
2179905 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:2180257 original size:26 final size:26
Alignment explanation
Indices: 2180208--2180258 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2180198 TTGACTTAGG
* *
2180208 CATACAGAGTTCATTCCTAGTCTAAA
1 CATACAGAGTTCATTCCCAATCTAAA
*
2180234 CATACGGAGTTCATTCCCAATCTAA
1 CATACAGAGTTCATTCCCAATCTAA
2180259 GATCGGACCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAA
Found at i:2182219 original size:26 final size:26
Alignment explanation
Indices: 2182180--2182230 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2182170 GTTGACTTAG
* *
2182180 GCATATGGACTTCATTCCCAGTCTAA
1 GCATATAGACTTCATTCCCAATCTAA
*
2182206 GCATATAGAGTTCATTCCCAATCTA
1 GCATATAGACTTCATTCCCAATCTA
2182231 TGATCAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
GCATATAGACTTCATTCCCAATCTAA
Found at i:2186661 original size:45 final size:45
Alignment explanation
Indices: 2186520--2186661 Score: 135
Period size: 45 Copynumber: 3.2 Consensus size: 45
2186510 TCGACGTGTG
* * * ** *
2186520 CCGATTGTGGTCGAGGCAACTGCCCGCACCATTGCCCAGCATGTA
1 CCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTA
* * * *
2186565 CCGATGGT-GTTCGATGCAATCGCCCACACCTAGGG-CCAGCTTGTG
1 CCGATGGTGGTT-GAGGCAACCGCCCGCACC-AGGGCCCAGCTTGTA
* *
2186610 CTGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTTTA
1 CCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTA
*
2186655 TCGATGG
1 CCGATGG
2186662 CGGTCGGGGC
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
44 6 0.08
45 64 0.85
46 5 0.07
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
CCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTA
Found at i:2187640 original size:26 final size:26
Alignment explanation
Indices: 2187604--2187656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2187594 GTTAACTTAG
2187604 GCATACGGAGTTC-GTCCCTAGTCTAA
1 GCATACGGAGTTCAGTCCC-AGTCTAA
*
2187630 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAGTCCCAGTCTAA
2187656 G
1 G
2187657 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAGTCCCAGTCTAA
Found at i:2187984 original size:26 final size:26
Alignment explanation
Indices: 2187954--2188009 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
2187944 TGGGTTGACT
*
2187954 TAAGCATACAGAGTTCATTCCCGGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
*
2187980 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
2188006 TAAG
1 TAAG
2188010 ATCAGACCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:2189152 original size:26 final size:26
Alignment explanation
Indices: 2189113--2189165 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2189103 GCTGACTTAG
2189113 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* *
2189139 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
2189165 G
1 G
2189166 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:2189764 original size:45 final size:45
Alignment explanation
Indices: 2189715--2189801 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
2189705 ACCTTGTGTC
* *
2189715 GATGGTGGTCGAGGCAATCGCTCGTACCAAGGGCCAACATGTGCT
1 GATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAACATGTGCT
*
2189760 GATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAGCATGT
1 GATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAACATGT
2189802 ATCGATGGTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.23, C:0.24, G:0.34, T:0.18
Consensus pattern (45 bp):
GATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAACATGTGCT
Found at i:2189809 original size:45 final size:44
Alignment explanation
Indices: 2189713--2189811 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 44
2189703 CCACCTTGTG
* *
2189713 TCGATGGTGGTCGAGGCAATCGCTCGTACCAAGGGCCAACATGT
1 TCGATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAACATGT
* *
2189757 GCTGATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAGCATGT
1 TC-GATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAACATGT
2189802 ATCGATGGTG
1 -TCGATGGTG
2189812 ACTGAGGTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
44 1 0.02
45 46 0.96
46 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.34, T:0.20
Consensus pattern (44 bp):
TCGATGGTGGTAGAGGCAATCGCTCGCACCAAGGGCCAACATGT
Found at i:2190858 original size:26 final size:26
Alignment explanation
Indices: 2190808--2190858 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2190798 TTGACTTAGG
*
2190808 CATACAGAGTTCATCCCTAGTCTAAC
1 CATACAGAGTTCATCCCTAGCCTAAC
2190834 CATACAGAGTTCATTCCC-AGCCTAA
1 CATACAGAGTTCA-TCCCTAGCCTAA
2190859 GATCGAATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCTAGCCTAAC
Found at i:2191816 original size:45 final size:44
Alignment explanation
Indices: 2191670--2191818 Score: 113
Period size: 45 Copynumber: 3.3 Consensus size: 44
2191660 GGGTTCGACA
* * * ** **
2191670 TGTGCCGATGGTGGTCGAGGTAACCGCCCACACCACGGCCCAGCA
1 TGTGCCGATGGTGGTTGAGTTAATCGCCTGCACCA-GGCCCAGTT
* * * * *
2191715 TGTGCCGATGGTGTTTGA-TGCAATCGCTTGTACCAGGGGCCA-TCT
1 TGTGCCGATGGTGGTTGAGT-TAATCGCCTGCACCA-GGCCCAGT-T
* *
2191760 TGTACCAATGGTGGTTGAGTTAATCGCCTGCACCAGGACCCAGTT
1 TGTGCCGATGGTGGTTGAGTTAATCGCCTGCACCAGG-CCCAGTT
2191805 TGTGCCGATGGTGG
1 TGTGCCGATGGTGG
2191819 GCGAGGCTGG
Statistics
Matches: 77, Mismatches: 22, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
44 2 0.03
45 73 0.95
46 2 0.03
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (44 bp):
TGTGCCGATGGTGGTTGAGTTAATCGCCTGCACCAGGCCCAGTT
Found at i:2192367 original size:26 final size:26
Alignment explanation
Indices: 2192317--2192367 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
2192307 AAAACTCCTT
* * **
2192317 CTAAAAAATTTTTAAAAATTTTGAAC
1 CTAAAAAAGTTTCAAAAATCGTGAAC
2192343 CTAAAAAAGTTTCAAAAATCGTGAA
1 CTAAAAAAGTTTCAAAAATCGTGAA
2192368 AAATAGAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.31
Consensus pattern (26 bp):
CTAAAAAAGTTTCAAAAATCGTGAAC
Found at i:2192932 original size:196 final size:196
Alignment explanation
Indices: 2192592--2192957 Score: 441
Period size: 196 Copynumber: 1.9 Consensus size: 196
2192582 CGTAGTGCAC
* * ** * * **
2192592 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGTAGCAGGACTCACTGTGGGATCGACAGCA
1 TCCCAATCTAAGATCAAACCAGACCAAGGGTTGCAATAGCAGGACTCACAGCAGGATCGACAGCA
* * *
2192657 CGTAGAGGCAATCGGGTCAATCCTTGACTTGCACATCCTGCCTCTCTGGTCGGCTGAGCACCCAC
66 CGTAGAGGCAATCGGCTCAATCCCTGACTTGCACATCCTACCTCTCTGGTCGGCTGAGCACCCAC
* ** *
2192722 ATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCTAGTATAAGCATACAGAGTTCA
131 ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTATAAGCATACAGAGTTCA
2192787 T
196 T
*
2192788 TCCCAATCTAAGATCAAACCAGACCAAGGGTTGCAATAGCAGGAC-CAGCAGCAGGTTCGACAGC
1 TCCCAATCTAAGATCAAACCAGACCAAGGGTTGCAATAGCAGGACTCA-CAGCAGGATCGACAGC
* ** * * * * * *
2192852 ACGTAGGGGGGATCGAGCT-GATCCCTGACTTGCGCATTCTACCT-TTTCGGTCGGTTGAGCGCC
65 ACGTAGAGGCAATCG-GCTCAATCCCTGACTTGCACATCCTACCTCTCT-GGTCGGCTGAGCACC
* *
2192915 CGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCAT
128 CACACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
2192958 TCCATGTCTA
Statistics
Matches: 140, Mismatches: 27, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
195 4 0.03
196 134 0.96
197 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (196 bp):
TCCCAATCTAAGATCAAACCAGACCAAGGGTTGCAATAGCAGGACTCACAGCAGGATCGACAGCA
CGTAGAGGCAATCGGCTCAATCCCTGACTTGCACATCCTACCTCTCTGGTCGGCTGAGCACCCAC
ACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTATAAGCATACAGAGTTCA
T
Found at i:2198766 original size:26 final size:26
Alignment explanation
Indices: 2198730--2198782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2198720 GTTGACTTAG
* *
2198730 GCATGCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2198756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2198782 G
1 G
2198783 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2199227 original size:159 final size:159
Alignment explanation
Indices: 2198930--2199275 Score: 430
Period size: 159 Copynumber: 2.2 Consensus size: 159
2198920 CCCAGTCTAA
* * ** * *
2198930 GCATACAAAGTTCATTCCCAGTCAAAG-ATCAGACTGGACCGAGGGTTACGGCAGTAGGATCGAC
1 GCATACAGAGTTCATTCCCAGTCTAAGCCCCAG-CCGGACAGAGGGTTACGGCAGTAGGATCGAC
* * * * * * *
2198994 AGCACGCAAGGGGGGATCGGGTCGATCCCCGGCTTGCGCATTCTTCCTCTCCGATCGGCTGAGCA
65 AGCACGCAAGGGGGGATCAGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAGCA
* *
2199059 CCCGCACGCTCGTTTCGTGGGTTGGCTTAG
130 CCCGCACGCTCATTTCGTGGGTTGACTTAG
** *
2199089 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGCAGTGGGA-CTGA
1 GCATACAGAGTTCATTCCCA-GTCTAAGCCCCAGCCGGACAGAGGGTTACGGCAGTAGGATC-GA
* *
2199152 CAGCACGC-AGAGGGGGATCAGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGACCGACTCAG
64 CAGCACGCAAG-GGGGGATCAGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAG
* *
2199216 CGCCCGTACGCTCATTTCGTGGGTTGACTTAG
128 CACCCGCACGCTCATTTCGTGGGTTGACTTAG
2199248 GCATACAGAGTTCATTCCCAGTCTAAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGC
2199276 ATACGAAATT
Statistics
Matches: 160, Mismatches: 22, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
158 6 0.04
159 148 0.93
160 6 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCCCCAGCCGGACAGAGGGTTACGGCAGTAGGATCGACA
GCACGCAAGGGGGGATCAGGTCGATCCCCGGCTTACGCATTATGCCTCTCCGACCGACTCAGCAC
CCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:2199811 original size:45 final size:45
Alignment explanation
Indices: 2199755--2199953 Score: 173
Period size: 45 Copynumber: 4.4 Consensus size: 45
2199745 GGGCTCGGCG
* * ** *
2199755 TGTGTCGATGGTGGTGGAGGCAACCGCCCGTACCACTGCCCAGCA
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGCCCAGCT
* * * ** * * *
2199800 TGTGCCGATGGTGTTTGATACAACCGCCCACACCAAAAGGCCATCT
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACC-AAAGCCCAGCT
* **
2199846 TGTGGCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGCCCAGCT
** * ** *
2199891 TGTGTCGATGGTGGTCGAGGCAAGTGCCCGTACCAAAGGGCAGCC
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGCCCAGCT
* *
2199936 TGTGCCGATGATGGTCGA
1 TGTGTCGATGGTGGTCGA
2199954 TGCATGTGCC
Statistics
Matches: 120, Mismatches: 33, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
45 86 0.72
46 34 0.28
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAAGCCCAGCT
Found at i:2199926 original size:91 final size:90
Alignment explanation
Indices: 2199755--2199953 Score: 209
Period size: 91 Copynumber: 2.2 Consensus size: 90
2199745 GGGCTCGGCG
* * * * * * *
2199755 TGTGTCGATGGTGGTGGAGGCAACCGCCCGTACCACTGCCCAGCATGTGCCGATGGTGTTTGATA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGGTCGAGA
* *
2199820 CAACCGCCCACACCAAAAGGCCATCT
66 CAACCGCCCACACC-AAAGGCCAGCC
* * * * *
2199846 TGTGGCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGTCGATGGTGGTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGGTCGAGA
** ** *
2199911 CAAGTGCCCGTACCAAAGGGCAGCC
66 CAACCGCCCACACCAAAGGCCAGCC
*
2199936 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2199954 TGCATGTGCC
Statistics
Matches: 88, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
90 24 0.27
91 64 0.73
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGGTCGAGA
CAACCGCCCACACCAAAGGCCAGCC
Found at i:2200101 original size:11 final size:11
Alignment explanation
Indices: 2200085--2200117 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
2200075 GCCCGGGCAC
2200085 CATCGTCGGAG
1 CATCGTCGGAG
2200096 CATCGTCGGAG
1 CATCGTCGGAG
*
2200107 CATCATCGGAG
1 CATCGTCGGAG
2200118 AACCTACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:2200897 original size:26 final size:26
Alignment explanation
Indices: 2200867--2200919 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2200857 GTTGACTTAG
*
2200867 GCATACGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2200893 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2200919 G
1 G
2200920 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2201215 original size:26 final size:26
Alignment explanation
Indices: 2201186--2201238 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2201176 GTTGACTTAG
*
2201186 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
*
2201212 GCATACAGAGTTCGTTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2201238 G
1 G
2201239 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2202845 original size:26 final size:26
Alignment explanation
Indices: 2202816--2202866 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2202806 GTTGACTTAG
* *
2202816 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
2202842 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATCCCCAATCTA
2202867 GGATCGGATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:2203619 original size:45 final size:44
Alignment explanation
Indices: 2203486--2203619 Score: 130
Period size: 45 Copynumber: 3.0 Consensus size: 44
2203476 ATTTCGGGTG
* * *
2203486 CTGATAGTGGTTGAGGCAACTGCCCGCACCACGGCCCAGCATGTGT
1 CTGATAGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGC-T-TAT
* * *
2203532 C-GATAGT-GTTCGATGCAACCGCTCGCACCAGAGG-CCATCTTAT
1 CTGATAGTGGTT-GAGGCAACCGCCCGCACCAG-GGCCCAGCTTAT
* *
2203575 ACTGATGGTGGTTGAGGCAACCGCCCACACCAGGGCCCAGCTTAT
1 -CTGATAGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTAT
2203620 GCCATTTGTG
Statistics
Matches: 71, Mismatches: 11, Indels: 13
0.75 0.12 0.14
Matches are distributed among these distances:
43 2 0.03
44 7 0.10
45 56 0.79
46 6 0.08
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.20
Consensus pattern (44 bp):
CTGATAGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTAT
Found at i:2204608 original size:25 final size:26
Alignment explanation
Indices: 2204579--2204630 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
2204569 GTTGACTTAG
*
2204579 GCATATGGAGTTCA-TCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
2204604 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
2204630 G
1 G
2204631 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:2204970 original size:26 final size:26
Alignment explanation
Indices: 2204934--2204986 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2204924 GTTGACTTAG
2204934 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2204960 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2204986 G
1 G
2204987 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2205564 original size:45 final size:45
Alignment explanation
Indices: 2205427--2205584 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
2205417 GGGCTTGGCA
* * * *
2205427 TGTGTCGATGGTGGTCGAGGTAACCACCCACACTACGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACTAGGGCCCAGCT
* * * *** * * *
2205472 TGTGCTGATGGTGTTTGATTTAACCG-CTAGCACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCA-CACTAGGGCCCAGCT
* *
2205517 TGTGCCGATGGTGGTCGAGGCAACTGCCCACACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACTAGGGCCCAGCT
* *
2205562 TGTGCCGATGGCGGTCAAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2205585 GTGCCCGTAC
Statistics
Matches: 87, Mismatches: 24, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
44 2 0.02
45 83 0.95
46 2 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCACACTAGGGCCCAGCT
Found at i:2205611 original size:45 final size:44
Alignment explanation
Indices: 2205508--2205612 Score: 104
Period size: 45 Copynumber: 2.3 Consensus size: 44
2205498 CTAGCACTAG
* * * *
2205508 GGGCCATCTTGTGCCGATGGTGGTCGAGGCAACTGCCCACACCA
1 GGGCCAGCCTGTGCCGATGGCGGTCAAGGCAACTGCCCACACCA
* * **
2205552 GGGCCCAGCTTGTGCCGATGGCGGTCAAGGCAAGTGCCCGTACCAAA
1 GGG-CCAGCCTGTGCCGATGGCGGTCAAGGCAACTGCCCACACC--A
2205599 GGG-CAGCCTGTGCC
1 GGGCCAGCCTGTGCC
2205613 AATGATGGTC
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
44 3 0.06
45 44 0.86
47 4 0.08
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.16
Consensus pattern (44 bp):
GGGCCAGCCTGTGCCGATGGCGGTCAAGGCAACTGCCCACACCA
Found at i:2206552 original size:26 final size:26
Alignment explanation
Indices: 2206516--2206568 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2206506 GTTGACTTAG
*
2206516 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2206542 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2206568 G
1 G
2206569 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2207334 original size:45 final size:46
Alignment explanation
Indices: 2207188--2207336 Score: 151
Period size: 45 Copynumber: 3.3 Consensus size: 46
2207178 TTTTGGGTGT
* * * * * *
2207188 CGATAGTGGTTGAGCCAACCACCCGCACCA-TGGCCCAGCATGTGT
1 CGATGGTGGTCGAGGCAACCACCCGCACTAGGGGCCCAGCATGTGC
* * * * *
2207233 CGATGGTGTTCAATGCAACCACCTGCACTAGGGG-CCATCATGTGC
1 CGATGGTGGTCGAGGCAACCACCCGCACTAGGGGCCCAGCATGTGC
* * *
2207278 TGATGGTGGTCGAGGCAACCGCCCGCACT-GGGGCCCAGCTTGTGC
1 CGATGGTGGTCGAGGCAACCACCCGCACTAGGGGCCCAGCATGTGC
2207323 CGATGGTGGTCGAG
1 CGATGGTGGTCGAG
2207337 ACAAGTGCTC
Statistics
Matches: 82, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
44 4 0.05
45 76 0.93
46 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (46 bp):
CGATGGTGGTCGAGGCAACCACCCGCACTAGGGGCCCAGCATGTGC
Found at i:2208649 original size:26 final size:26
Alignment explanation
Indices: 2208613--2208665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2208603 GTTGACTTAG
2208613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2208639 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2208665 G
1 G
2208666 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2209229 original size:45 final size:45
Alignment explanation
Indices: 2209112--2209263 Score: 162
Period size: 45 Copynumber: 3.4 Consensus size: 45
2209102 GGCATATGCC
* * * *
2209112 GATGGTGGTCGAGGTAACCACCCACACCATGGCCCAGCATGTGCT
1 GATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTGCT
* * * * ** * *
2209157 AATGGTGTTCGATGCAACCGCTAGCACCAGGGGCCATCTTGTGCT
1 GATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTGCT
*
2209202 GATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGGTTGTG-T
1 GATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTGCT
*
2209246 GATTGGCGGTCGAGGCAA
1 GA-TGGTGGTCGAGGCAA
2209264 GTGCCCGTAC
Statistics
Matches: 84, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 3 0.04
45 81 0.96
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTGCT
Found at i:2209913 original size:26 final size:26
Alignment explanation
Indices: 2209877--2209929 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2209867 GTTGACTTAG
*
2209877 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
2209903 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
2209929 G
1 G
2209930 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:2212335 original size:24 final size:24
Alignment explanation
Indices: 2212283--2212342 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
2212273 CACAAGTGGA
* *
2212283 ATGGTCAGTGGACCATGAGCTGCG
1 ATGGTCAGTGGACCATGAACTACG
* *
2212307 ATGGTCAGTGGACCGTGAACTATG
1 ATGGTCAGTGGACCATGAACTACG
*
2212331 TTGGTCAGTGGA
1 ATGGTCAGTGGA
2212343 GCAGGAGTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.22, C:0.17, G:0.37, T:0.25
Consensus pattern (24 bp):
ATGGTCAGTGGACCATGAACTACG
Found at i:2214511 original size:84 final size:83
Alignment explanation
Indices: 2214347--2214512 Score: 210
Period size: 84 Copynumber: 2.0 Consensus size: 83
2214337 AGTCGGGAGA
* ** * * *
2214347 GGTGTGCTGCAGTTGGGGTAGTCCACCCAAGTCCCTTGTGGGACTAGCATAATGGTTGGTGTCAA
1 GGTGTGCTACAGCAGGGGCAGTCCACCCAAGTCCCTTGCGGGACTAGCATAATAGTTGGTGTCAA
*
2214412 CCATACGAGCGGGCGACT
66 CCATACGAGCAGGCGACT
2214430 GGTGTGCTACAGCAGGGGCAGTCCACCCAAGTCCCCTTGCGGGACTAGCATAA-AGTTGGGTGTC
1 GGTGTGCTACAGCAGGGGCAGTCCACCCAAGT-CCCTTGCGGGACTAGCATAATAGTT-GGTGTC
* *
2214494 AATCATGC-ATGCAGGCGAC
64 AACCATACGA-GCAGGCGAC
2214513 CGATATTGAT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
83 32 0.45
84 39 0.55
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.22
Consensus pattern (83 bp):
GGTGTGCTACAGCAGGGGCAGTCCACCCAAGTCCCTTGCGGGACTAGCATAATAGTTGGTGTCAA
CCATACGAGCAGGCGACT
Found at i:2215374 original size:26 final size:26
Alignment explanation
Indices: 2215345--2215397 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2215335 TTTCACTTAG
2215345 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2215371 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2215397 G
1 G
2215398 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2215932 original size:45 final size:45
Alignment explanation
Indices: 2215849--2216006 Score: 163
Period size: 45 Copynumber: 3.5 Consensus size: 45
2215839 TCGGTGCTTG
* ** *
2215849 GCATGTGTTGATGGTGGGTTAAGGCAACCGCCCGCACCATGGCCCA
1 GCATGTGCTGATGGT-GGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * *
2215895 GCATGTGCTGATGGTGTTCGATGCAACCGCCCTCACCAGGGGCCA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * * * *
2215940 TCTTGTGCTGATGGTGGTCGAGGCAACCACCCGAACTAGGGCCTA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* *
2215985 GCTTGTGCTGATGGCGGTCGAG
1 GCATGTGCTGATGGTGGTCGAG
2216007 ACAAGTGCCC
Statistics
Matches: 92, Mismatches: 20, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 78 0.85
46 14 0.15
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.22
Consensus pattern (45 bp):
GCATGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
Found at i:2217129 original size:196 final size:196
Alignment explanation
Indices: 2216801--2217162 Score: 458
Period size: 196 Copynumber: 1.8 Consensus size: 196
2216791 GTGCGCTCCT
* * ** **
2216801 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGAACCCGTAATGGGATCGATAGCACACA
1 AGTCTAAGATCGGACAAAACCGAGGGTTGCGACAGCAGAACCCGTAACAGGATCGATAGCACACA
* * * * * *
2216866 GAGGGGACCGCATCGATCCCCAGCTTGTGAGTCCTCCCTCTCTGGCCGGCTAAGCGATCGTACGC
66 GAGGGGACCGCACCGATCCCCAGCTTGCGAGTCCTCCCTCTCCGACCGGCTAAGCGACCGCACGC
2216931 TCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCACAATCTAAGCATACGAAGTTCATTCG
131 TCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCACAATCTAAGCATACGAAGTTCATTCG
2216996 C
196 C
* * * * **
2216997 AGTCTAAGATCGGACAAAACCGAGGGTTGCGACAGCAGGACCTGTAGCAGGATCGGTAGCACGTA
1 AGTCTAAGATCGGACAAAACCGAGGGTTGCGACAGCAGAACCCGTAACAGGATCGATAGCACACA
* * * * *
2217062 GAGGGGATCG-AGCCGATCCCCAGCTTGCGCA-TTCTGCCTCTCCGACCGGCTGAGCGCCCGCAC
66 GAGGGGACCGCA-CCGATCCCCAGCTTGCG-AGTCCTCCCTCTCCGACCGGCTAAGCGACCGCAC
* **
2217125 GCTCGTTTCGTGGGTTGGCTTCTGCATACGGAGTTCAT
129 GCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCAT
2217163 TCCTTGTCTA
Statistics
Matches: 138, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
195 1 0.01
196 136 0.99
197 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (196 bp):
AGTCTAAGATCGGACAAAACCGAGGGTTGCGACAGCAGAACCCGTAACAGGATCGATAGCACACA
GAGGGGACCGCACCGATCCCCAGCTTGCGAGTCCTCCCTCTCCGACCGGCTAAGCGACCGCACGC
TCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCACAATCTAAGCATACGAAGTTCATTCG
C
Found at i:2217331 original size:159 final size:158
Alignment explanation
Indices: 2217040--2217332 Score: 397
Period size: 159 Copynumber: 1.8 Consensus size: 158
2217030 AGCAGGACCT
* * * * * *
2217040 GTAGCAGGATCGGTAGCACGTAGAGGGGATCGAGCCGATCCCCAGCTTGCGCATTCTGCCTCTCC
1 GTAGCAAGATCGGCAGCACGCAGAGGGGAACGAGCCGATCCCCAGCTTACGCATTATGCCTCTCC
* * * ** ** **
2217105 GACCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTCTGCATACGGAGTTCATTCCTTGT
66 GACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGT
2217170 CTAACCCCTAGTTGGACCAAAGGTTGTG
131 CTAACCCCTAGTTGGACCAAAGGTTGTG
*
2217198 GTAGCAAGATCGGCAGCACGCAGAGGGGAAACGAGCCGATCCCCGGCTTACGCATTATGCCTCTC
1 GTAGCAAGATCGGCAGCACGCAGAGGGG-AACGAGCCGATCCCCAGCTTACGCATTATGCCTCTC
* * * *
2217263 CGGCCAGCTCAGTGCCTGCACGCTCGTTTCATGGTTTCACTTAGGCATACGGAGTTCATTCCCAG
65 CGACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAG
2217328 TCTAA
130 TCTAA
2217333 GCAGATGGAG
Statistics
Matches: 114, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
158 25 0.22
159 89 0.78
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.24
Consensus pattern (158 bp):
GTAGCAAGATCGGCAGCACGCAGAGGGGAACGAGCCGATCCCCAGCTTACGCATTATGCCTCTCC
GACCAGCTCAGCGCCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTCCCAGT
CTAACCCCTAGTTGGACCAAAGGTTGTG
Found at i:2217936 original size:45 final size:45
Alignment explanation
Indices: 2217816--2217971 Score: 127
Period size: 45 Copynumber: 3.5 Consensus size: 45
2217806 GCTCGACATG
** * * * ***
2217816 TACCGATGGTGGTCGAGGCAACCGCCCGCACCATGGCCTAGCACG
1 TACCGATGGTGGTCGAGGCAACCATCCGCACAAGGGCCCAGCTTA
* * * *
2217861 TGCCGATGGTGTTCGATGCAACCATCCGCACAAAGGG-CCATCTTA
1 TACCGATGGTGGTCGAGGCAACCATCCGCAC-AAGGGCCCAGCTTA
* *
2217906 TACCGATGGTGGTCTAGGCAACCA-CTCGCACCAGGGCCCAGCTTA
1 TACCGATGGTGGTCGAGGCAACCATC-CGCACAAGGGCCCAGCTTA
* * *
2217951 TGCCGGTGGCGGTCGAGGCAA
1 TACCGATGGTGGTCGAGGCAA
2217972 GTGCCTGTAC
Statistics
Matches: 86, Mismatches: 22, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
44 5 0.06
45 78 0.91
46 3 0.03
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.17
Consensus pattern (45 bp):
TACCGATGGTGGTCGAGGCAACCATCCGCACAAGGGCCCAGCTTA
Found at i:2218950 original size:26 final size:25
Alignment explanation
Indices: 2218899--2218976 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 25
2218889 GTTAACTTAG
2218899 GCATACAGAGTTCATCCCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
2218924 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCAT-CCCAGTCTAA
*
2218950 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCA-TCCCAGTCTAA
2218976 G
1 G
2218977 ATCAAATCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
25 15 0.30
26 34 0.68
27 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:2219317 original size:26 final size:26
Alignment explanation
Indices: 2219280--2219332 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2219270 GTTGACTTAG
2219280 GCATACGAAGTTCAGTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
*
2219306 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCAGTCCCAGTCTAA
2219332 G
1 G
2219333 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:2219830 original size:26 final size:26
Alignment explanation
Indices: 2219794--2219846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2219784 GGTGGTCGAG
*
2219794 GCATACGGAGTTCATCCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
*
2219820 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCTCAGTCTAA
2219846 G
1 G
2219847 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCTCAGTCTAA
Found at i:2220675 original size:13 final size:13
Alignment explanation
Indices: 2220657--2220681 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2220647 ATGGTCGATG
2220657 CATGTGCCATCAC
1 CATGTGCCATCAC
2220670 CATGTGCCATCA
1 CATGTGCCATCA
2220682 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2221577 original size:26 final size:26
Alignment explanation
Indices: 2221541--2221593 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2221531 GTTGACTTAG
2221541 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
2221567 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2221593 G
1 G
2221594 ATTGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2227256 original size:26 final size:26
Alignment explanation
Indices: 2227227--2227303 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
2227217 TTAGCTTAGG
2227227 CATACGGAGTTCATCCCCAACCTAAA
1 CATACGGAGTTCATCCCCAACCTAAA
*
2227253 CATACGGAGTTCATCCCCAACCTAAG
1 CATACGGAGTTCATCCCCAACCTAAA
** * *
2227279 CATACAAAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATCCCCAACCTAA
2227304 GATCGGACGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.35, C:0.32, G:0.10, T:0.22
Consensus pattern (26 bp):
CATACGGAGTTCATCCCCAACCTAAA
Found at i:2228279 original size:90 final size:90
Alignment explanation
Indices: 2228116--2228311 Score: 207
Period size: 90 Copynumber: 2.2 Consensus size: 90
2228106 GGGCTCGGCA
* * * * * * *
2228116 TGTGTCGATGATGGTCGAGGCAATCGCCCGCCCCACGGCCCAGCATGTGCTGATGGAGTTCGATG
1 TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAACATGTGCCGATGAAGTTCGAGG
*
2228181 CAATTGCCCGCACAAGGGGCCATCT
66 CAAATGCCCGCACAAGGGGCCATCT
* * * * *
2228206 TGTGCCGATGGTGGTTGAGGCAACCGCCTGCACCAGGGCCCAACTTGTGCCGATGAAGATT-GAG
1 TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAACATGTGCCGATGAAG-TTCGAG
* * * *
2228270 GCAAATGCCCGTACCAAAGGG-CAGCC
65 GCAAATGCCCGCA-CAAGGGGCCATCT
2228296 TGTGCCGATGATGGTC
1 TGTGCCGATGATGGTC
2228312 AATGCATGTA
Statistics
Matches: 85, Mismatches: 19, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
90 77 0.91
91 8 0.09
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAACATGTGCCGATGAAGTTCGAGG
CAAATGCCCGCACAAGGGGCCATCT
Found at i:2229562 original size:26 final size:26
Alignment explanation
Indices: 2229513--2229565 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2229503 GTTGACTTAG
*
2229513 GCATACGGAGTTCATTCTCGGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
2229539 GCATACGGAGTTCATT-TCTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
2229565 G
1 G
2229566 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:2230127 original size:45 final size:45
Alignment explanation
Indices: 2230010--2230215 Score: 142
Period size: 45 Copynumber: 4.6 Consensus size: 45
2230000 GCTCGACATG
*
2230010 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATA
* ** * * * * * * * *
2230055 TGCCGATGGTGTTTTATGCAACCGCCCGTACTAGGGGCCATCTTA
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATA
* * * ** *
2230100 TGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGCTGGCATG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATA
** * * * * *
2230145 TGTAGATGGTGATCAAGGCAACCGCCCGCACCAGGGCCCAGCTTA
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATA
** ** *
2230190 TGCTAATGGCAGTCGAGGCAAGTGCC
1 TGCCGATGGTGGTCGAGGCAACTGCC
2230216 TGTACCAAAG
Statistics
Matches: 114, Mismatches: 47, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
45 114 1.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATA
Found at i:2230166 original size:90 final size:90
Alignment explanation
Indices: 2230010--2230215 Score: 232
Period size: 90 Copynumber: 2.3 Consensus size: 90
2230000 GCTCGACATG
* * * ** *
2230010 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTTTATGCA
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGCAGATGGTGATCAAGGCA
* * * *
2230075 ACCGCCCGTACTAGGGGCCATCTTA
66 ACCGCCCGCACCAGGGCCCAGCTTA
* * ** *
2230100 TGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGCTGGCATGTGTAGATGGTGATCAAGGCA
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGCAGATGGTGATCAAGGCA
2230165 ACCGCCCGCACCAGGGCCCAGCTTA
66 ACCGCCCGCACCAGGGCCCAGCTTA
** ** *
2230190 TGCTAATGGCAGTCGAGGCAAGTGCC
1 TGCCGATGGTGGTCGAGGCAACTGCC
2230216 TGTACCAAAG
Statistics
Matches: 96, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 96 1.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (90 bp):
TGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCAGCATGTGCAGATGGTGATCAAGGCA
ACCGCCCGCACCAGGGCCCAGCTTA
Found at i:2231193 original size:26 final size:26
Alignment explanation
Indices: 2231141--2231193 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2231131 GTTTACTTAG
* *
2231141 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCAAGTCTAA
* *
2231167 GCATACAAAGTTCATTCCAAGTGTAA
1 GCATACAAAGTTCATCCCAAGTCTAA
2231193 G
1 G
2231194 ATTAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCAAGTCTAA
Found at i:2232138 original size:45 final size:44
Alignment explanation
Indices: 2232001--2232145 Score: 121
Period size: 45 Copynumber: 3.2 Consensus size: 44
2231991 GGGCTCGACA
* * * * *
2232001 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCACGGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACC-GCCGCATCAAGGCCCAGCT
* * * ** *
2232046 TGTGCCGATGGTGTTCGATGCAACCGCC-CATACCAGGGTACATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCGCAT--CAAGGCCCAGCT
* *
2232091 TGTGCTGATGTTGGTCGAGGCAACCGCCTGCATCAAGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCC-GCATCAAGGCCCAGCT
*
2232136 TGTGTCGATG
1 TGTGCCGATG
2232146 ACAGTCGAGG
Statistics
Matches: 76, Mismatches: 20, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 69 0.91
47 3 0.04
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCGCATCAAGGCCCAGCT
Found at i:2232218 original size:13 final size:13
Alignment explanation
Indices: 2232200--2232225 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2232190 GATGGTCGAT
2232200 GCATGTGCCATCA
1 GCATGTGCCATCA
2232213 GCATGTGCCATCA
1 GCATGTGCCATCA
2232226 TGTGCCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
GCATGTGCCATCA
Found at i:2233137 original size:26 final size:26
Alignment explanation
Indices: 2233101--2233153 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2233091 GCTGACTTAG
2233101 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2233127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2233153 G
1 G
2233154 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2233808 original size:45 final size:45
Alignment explanation
Indices: 2233712--2233808 Score: 131
Period size: 45 Copynumber: 2.2 Consensus size: 45
2233702 CCTACACCAG
* * * *
2233712 GTGCCAGCACCAGGGCCCAGCCTGTGCCAATGGTGGTCGAGGTAA
1 GTGCCCGCACCAGGGCCCAGCCTATGCCAATGGCGGTCGAGGCAA
** *
2233757 CCGCCCGCACCAGGGCCCAGCCTATGCCGATGGCGGTCGAGGCAA
1 GTGCCCGCACCAGGGCCCAGCCTATGCCAATGGCGGTCGAGGCAA
2233802 GTGCCCG
1 GTGCCCG
2233809 TACCGAAGGG
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.18, C:0.35, G:0.35, T:0.12
Consensus pattern (45 bp):
GTGCCCGCACCAGGGCCCAGCCTATGCCAATGGCGGTCGAGGCAA
Found at i:2233859 original size:13 final size:13
Alignment explanation
Indices: 2233843--2233868 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2233833 GTGGTCTATG
2233843 CATGTGCCATCAA
1 CATGTGCCATCAA
2233856 CATGTGCCATCAA
1 CATGTGCCATCAA
2233869 GTGCCATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (13 bp):
CATGTGCCATCAA
Found at i:2234565 original size:26 final size:26
Alignment explanation
Indices: 2234535--2234587 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2234525 GTTGACTTAG
*
2234535 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATAAGGAGTTCACT-CCCAGTCTAA
2234561 GCATAAGGAGTTCACTCCCAGTCTAA
1 GCATAAGGAGTTCACTCCCAGTCTAA
2234587 G
1 G
2234588 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATAAGGAGTTCACTCCCAGTCTAA
Found at i:2234919 original size:26 final size:26
Alignment explanation
Indices: 2234890--2234942 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2234880 GTTGACTTAG
*
2234890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2234916 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2234942 G
1 G
2234943 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2235548 original size:45 final size:45
Alignment explanation
Indices: 2235394--2235549 Score: 161
Period size: 45 Copynumber: 3.5 Consensus size: 45
2235384 TCGGGGCTCG
* * ** * *
2235394 GCATGTGTCAATGGTGGTCGAGGCAACCGCCCGTACCACGACCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTACCCGTACCAAGGCCCA
* *
2235439 GCATGTGCCGATGGTGTTCGATGCAACTACCCGTACCAAGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTACCCGTACCAAGGCCCA
* * * *
2235484 GCTTGTGCCGATGGCGGTCGAGGCAAGTACCCGTACCAAAGG-GCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTACCCGTACC-AAGGCCCA
* * *
2235529 GCCTGTGTCGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
2235550 TGCATGTGCC
Statistics
Matches: 92, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 88 0.96
46 4 0.04
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACTACCCGTACCAAGGCCCA
Found at i:2235578 original size:23 final size:23
Alignment explanation
Indices: 2235552--2235607 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
2235542 ATGGTCGATG
* *
2235552 CATGTGCCATCACCATGCGCCAT
1 CATGTGCCATCACCATGCACCAC
2235575 CATGTGCCATCACCATGCACCAC
1 CATGTGCCATCACCATGCACCAC
2235598 CATGTGCCAT
1 CATGTGCCAT
2235608 TGATGGTCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.23, C:0.39, G:0.16, T:0.21
Consensus pattern (23 bp):
CATGTGCCATCACCATGCACCAC
Found at i:2236512 original size:26 final size:26
Alignment explanation
Indices: 2236476--2236527 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2236466 TGACGTAGGC
2236476 ATACGGAGTTCATCCCCAATCTAAGA
1 ATACGGAGTTCATCCCCAATCTAAGA
* *
2236502 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATCCCCAATCTAAGA
2236528 TCGAACCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAATCTAAGA
Found at i:2236859 original size:26 final size:26
Alignment explanation
Indices: 2236829--2236881 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2236819 ATTGACTTAG
2236829 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2236855 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
2236881 G
1 G
2236882 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:2237156 original size:159 final size:159
Alignment explanation
Indices: 2236575--2237167 Score: 477
Period size: 159 Copynumber: 3.7 Consensus size: 159
2236565 GCAGGATTAG
* * * * *
2236575 CAGCACGTAG-GGGGGATCGAGTCGATCCTCGGCTTGCACATTCTGCCTCTCCGGCC-GACTGAA
1 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAG-CTGAA
* * * *
2236638 CGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAG
65 CACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAG
* * * *
2236703 CCGGACTGAGGGTTGTGGCAACGGAACCGG
130 CCTGACCGAGGGTTGTGGCAACGGGACCGA
* * * * * * *
2236733 TAGCACGCAGAGGGGGATCTGGCTGATCCTCAGCTTACGCATTATGCCTCTCCGGTCAGCTCAAC
1 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTGAAC
* ** * * * **
2236798 ACCCGCACGCTTGTTTCATGGATTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGCATATG
66 ACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CCATGTTTAAGC---CC
* * * * ** *
2236862 GAGTTCAT-TCCCA--GTCT-AAG-ATC-GGACCGATA
127 CAG--CCTGACCGAGGGT-TGTGGCAACGGGACCG--A
* * * * * * ** * * *
2236894 GCAGCACGGAGAGGGGGA-CTGGGTCGACCCTCGACTTTCGTATCCTACCTCTTCGGCCAACTGA
1 -CAGCACGCAGAGGGGGATC-GGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTGA
* * * * * *
2236958 GCACCCGCACTCTCATTTCGTGGGTTAACTCAGGCATACGGAGTTCATTCCATGTTTAAGCCCCA
64 ACACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCA
*
2237023 GCCTGACCGAGGGTTGTGGCAACGGGACTGA
129 GCCTGACCGAGGGTTGTGGCAACGGGACCGA
* * * * *
2237054 CAGCACGCAGAGGGGGATCGGGCCAATCCTTGGCTTGCGCATTATGCCTCTCCGACCAGTTGAGC
1 CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTGAAC
*
2237119 ACCCACACGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCC
66 ACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
2237168 CAGTCTAAGC
Statistics
Matches: 323, Mismatches: 91, Indels: 41
0.71 0.20 0.09
Matches are distributed among these distances:
157 2 0.01
158 11 0.03
159 188 0.58
160 11 0.03
161 9 0.03
162 99 0.31
163 2 0.01
164 1 0.00
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (159 bp):
CAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTGCGCATTATGCCTCTCCGGCCAGCTGAAC
ACCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCCAGC
CTGACCGAGGGTTGTGGCAACGGGACCGA
Found at i:2237241 original size:321 final size:321
Alignment explanation
Indices: 2236620--2237241 Score: 857
Period size: 321 Copynumber: 1.9 Consensus size: 321
2236610 GCACATTCTG
* * * ** *
2236620 CCTCTCCGGCCGACTGAACGCCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1 CCTCTCCGGCCAACTGAACACCCACACGCTCATTTCGTGGGTTAACTCAGGCATACGGAGTTCAT
* **
2236685 TCCATGTTTAAGCCCCAGCCGGACTGAGGGTTGTGGCAACGGAACCGGTAGCACGCAGAGGGGGA
66 TCCATGTTTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGAACCGACAGCACGCAGAGGGGGA
* ** ** * **
2236750 TCTGGCTGATCCTCAGCTTACGCATTATGCCTCTCCGGTCAGCTCAACACCCGCACGCTTGTTTC
131 TCGGGCCAATCCTCAGCTTACGCATTATGCCTCTCCGACCAGCTCAACACCCACACGCTCATTTC
* * **
2236815 ATGGATTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
196 ATGGATTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * *
2236880 AGATCGGACCGATAGCAGCACGGAGAGGGGGACTGGGTCGACCCTCGACTTTCGTATCCTA
261 AGATCGAACCGATAGCAGCACGCAGAGGGGGACCGGGTCGACCCTCGACTTTCGTATCCTA
* * * *
2236941 CCTCTTCGGCCAACTGAGCACCCGCACTCTCATTTCGTGGGTTAACTCAGGCATACGGAGTTCAT
1 CCTCTCCGGCCAACTGAACACCCACACGCTCATTTCGTGGGTTAACTCAGGCATACGGAGTTCAT
* * *
2237006 TCCATGTTTAAGCCCCAGCCTGACCGAGGGTTGTGGCAACGGGACTGACAGCACGCAGAGGGGGA
66 TCCATGTTTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGAACCGACAGCACGCAGAGGGGGA
** * * * *
2237071 TCGGGCCAATCCTTGGCTTGCGCATTATGCCTCTCCGACCAGTTGAGCACCCACACGCTCATTTC
131 TCGGGCCAATCCTCAGCTTACGCATTATGCCTCTCCGACCAGCTCAACACCCACACGCTCATTTC
* *
2237136 ATGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTA
196 ATGGATTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
* * * *
2237201 AGATCGAACTGGTAGTAGCATGCAGAGGGGGACCGGGTCGA
261 AGATCGAACCGATAGCAGCACGCAGAGGGGGACCGGGTCGA
2237242 TCGTTGGCTT
Statistics
Matches: 258, Mismatches: 43, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
321 258 1.00
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.23
Consensus pattern (321 bp):
CCTCTCCGGCCAACTGAACACCCACACGCTCATTTCGTGGGTTAACTCAGGCATACGGAGTTCAT
TCCATGTTTAAGCCCCAGCCGGACCGAGGGTTGTGGCAACGGAACCGACAGCACGCAGAGGGGGA
TCGGGCCAATCCTCAGCTTACGCATTATGCCTCTCCGACCAGCTCAACACCCACACGCTCATTTC
ATGGATTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTA
AGATCGAACCGATAGCAGCACGCAGAGGGGGACCGGGTCGACCCTCGACTTTCGTATCCTA
Found at i:2237318 original size:321 final size:321
Alignment explanation
Indices: 2236572--2237318 Score: 829
Period size: 321 Copynumber: 2.3 Consensus size: 321
2236562 GTAGCAGGAT
* * * * * * * * * * *
2236572 TAGCAGCACGTAG-GGGGGATCGAGTCGATCCTCGGCTTGCACATTCTGCCTCTCCGGCCGACTG
1 TAGCAGCACGCAGAGGGGGACCGGGTCGACCCTCGACTTGCGCATCCTACCTCTTCGACCAACTG
* *
2236636 AACGCCCACA-CGCTCGTTTCGTGGGTTG-GCTTAGGCATACGGAGTTCATTCCATGTTTAAGCC
66 AGCGCCCACACCG-TCATTTCGTGGGTTGAG-TTAGGCATACGGAGTTCATTCCATGTTTAAGCC
* ** * **
2236699 CCAGCCGGACTGAGGGTTGTGGCAACGGAACCGGTAGCACGCAGAGGGGGATCTGGCTGATCCTC
129 CCAGCCGGACCGAGGGTTGTGGCAACGGAACCGACAGCACGCAGAGGGGGATCGGGCCAATCCTC
** * **
2236764 AGCTTACGCATTATGCCTCTCCGGTCAGCTCAACACCCGCACGCTTGTTTCATGGATTGACTTAG
194 AGCTTACGCATTATGCCTCTCCGACCAGCTCAACACCCACACGCTCATTTCATGGATTGACTTAG
* * ** *
2236829 GCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGA
259 CCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGA
* * * * *
2236892 TAGCAGCACGGAGAGGGGGACTGGGTCGACCCTCGACTTTCGTATCCTACCTCTTCGGCCAACTG
1 TAGCAGCACGCAGAGGGGGACCGGGTCGACCCTCGACTTGCGCATCCTACCTCTTCGACCAACTG
* * * * *
2236957 AGCACCCGCACTC-TCATTTCGTGGGTTAACTCAGGCATACGGAGTTCATTCCATGTTTAAGCCC
66 AGCGCCCACAC-CGTCATTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCATGTTTAAGCCC
* * * **
2237021 CAGCCTGACCGAGGGTTGTGGCAACGGGACTGACAGCACGCAGAGGGGGATCGGGCCAATCCTTG
130 CAGCCGGACCGAGGGTTGTGGCAACGGAACCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCA
* * * * *
2237086 GCTTGCGCATTATGCCTCTCCGACCAGTTGAGCACCCACACGCTCATTTCATGGGTTGACTTAGC
195 GCTTACGCATTATGCCTCTCCGACCAGCTCAACACCCACACGCTCATTTCATGGATTGACTTAGC
* * *
2237151 CATACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGAACTGG
260 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGA
* * * * * * * ** **
2237213 TAGTAGCATGCAGAGGGGGACCGGGTCGATCGTTGGCTTGCGCATTCTGGCTC-TCTGACCAGTT
1 TAGCAGCACGCAGAGGGGGACCGGGTCGACCCTCGACTTGCGCATCCTACCTCTTC-GACCAACT
* * *
2237277 GAGTGCCCACACCGTCATTTCATGGGTTGAGTTAAGCATACG
65 GAGCGCCCACACCGTCATTTCGTGGGTTGAGTTAGGCATACG
2237319 TAGTGCTTTC
Statistics
Matches: 348, Mismatches: 73, Indels: 11
0.81 0.17 0.03
Matches are distributed among these distances:
320 15 0.04
321 332 0.95
323 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (321 bp):
TAGCAGCACGCAGAGGGGGACCGGGTCGACCCTCGACTTGCGCATCCTACCTCTTCGACCAACTG
AGCGCCCACACCGTCATTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCATGTTTAAGCCCC
AGCCGGACCGAGGGTTGTGGCAACGGAACCGACAGCACGCAGAGGGGGATCGGGCCAATCCTCAG
CTTACGCATTATGCCTCTCCGACCAGCTCAACACCCACACGCTCATTTCATGGATTGACTTAGCC
ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGA
Found at i:2238527 original size:26 final size:26
Alignment explanation
Indices: 2238496--2238548 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2238486 GTTTACTTTG
2238496 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCACTC-CCAGTCTAA
2238522 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
2238548 G
1 G
2238549 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:2239468 original size:45 final size:44
Alignment explanation
Indices: 2239331--2239488 Score: 154
Period size: 45 Copynumber: 3.5 Consensus size: 44
2239321 GGGCTCGGCA
* * * * * *
2239331 TGTGCCGATGGTGGTTGAGGCAACCGCCTACACCACGACCCAGCA
1 TGTGCCAATGGTGGTCGAGGCAACCGCC-GCACCAAGGCCCAGCT
* * * * * *
2239376 TGTGCCGATGGTGTTCGATGCAACCGGCCGCACCAGGGGCCATCT
1 TGTGCCAATGGTGGTCGAGGCAACC-GCCGCACCAAGGCCCAGCT
2239421 TGTGCCAATGGTGGTCGAGGCAACCGCTCGCACCAAGGCCCAGCT
1 TGTGCCAATGGTGGTCGAGGCAACCGC-CGCACCAAGGCCCAGCT
* * *
2239466 TGTACGAATGGCGGTCGAGGCAA
1 TGTGCCAATGGTGGTCGAGGCAA
2239489 GTGCCCGTAC
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
44 2 0.02
45 88 0.95
46 3 0.03
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.17
Consensus pattern (44 bp):
TGTGCCAATGGTGGTCGAGGCAACCGCCGCACCAAGGCCCAGCT
Found at i:2240460 original size:26 final size:26
Alignment explanation
Indices: 2240431--2240483 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2240421 GTTGACTTAG
2240431 GCATACGGAGTTCATCCCCAGTATAA
1 GCATACGGAGTTCATCCCCAGTATAA
* * *
2240457 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTATAA
2240483 G
1 G
2240484 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTATAA
Found at i:2240745 original size:26 final size:26
Alignment explanation
Indices: 2240707--2240757 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2240697 GTAGAGGGGG
2240707 ATACGGAGATCATTCCCTGTCTAAGC
1 ATACGGAGATCATTCCCTGTCTAAGC
*
2240733 ATACGGAGTTCATTCCCTGTCTAAG
1 ATACGGAGATCATTCCCTGTCTAAG
2240758 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGATCATTCCCTGTCTAAGC
Found at i:2241256 original size:45 final size:45
Alignment explanation
Indices: 2241198--2241328 Score: 172
Period size: 45 Copynumber: 2.9 Consensus size: 45
2241188 CCGGGGCTTG
2241198 GCATGTGCCGATGGTGGTCGATGCAACCGCCCGCACTAGGGGCCA
1 GCATGTGCCGATGGTGGTCGATGCAACCGCCCGCACTAGGGGCCA
* * * * * * *
2241243 TCTTGTGCTGATGGTGGTCGATGCAATCGCCCGCACCAAGGGTCA
1 GCATGTGCCGATGGTGGTCGATGCAACCGCCCGCACTAGGGGCCA
* * *
2241288 GCATGTGCCAATGGTGATCGAGGCAACCGCCCGCACTAGGG
1 GCATGTGCCGATGGTGGTCGATGCAACCGCCCGCACTAGGG
2241329 CCGAGCTTGT
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.19, C:0.29, G:0.34, T:0.18
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGATGCAACCGCCCGCACTAGGGGCCA
Found at i:2241365 original size:90 final size:90
Alignment explanation
Indices: 2241198--2241379 Score: 203
Period size: 90 Copynumber: 2.0 Consensus size: 90
2241188 CCGGGGCTTG
* * * * * * **
2241198 GCATGTGCCGATGGTGGTCGATGCAACCGCCCGCACTAGGGGCCATCTTGTGCTGATGGTGGTCG
1 GCATGTGCCAATGGTGATCGAGGCAACCGCCCGCACTAGGGGCCAGCTTGTGCTAACGGCAGTCG
2241263 ATGCAATCGCCCGCACC-AAGGGTCA
66 ATGCAATCGCCCGCACCAAAGGG-CA
2241288 GCATGTGCCAATGGTGATCGAGGCAACCGCCCGCACTA-GGGCCGAGCTTGTG-TCAACGGCAGT
1 GCATGTGCCAATGGTGATCGAGGCAACCGCCCGCACTAGGGGCC-AGCTTGTGCT-AACGGCAGT
*
2241351 CGA-GACAAGT-GCCCGTACCAAAGGGCA
64 CGATG-CAA-TCGCCCGCACCAAAGGGCA
2241378 GC
1 GC
2241380 CTATACTGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
89 7 0.09
90 65 0.83
91 6 0.08
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (90 bp):
GCATGTGCCAATGGTGATCGAGGCAACCGCCCGCACTAGGGGCCAGCTTGTGCTAACGGCAGTCG
ATGCAATCGCCCGCACCAAAGGGCA
Found at i:2242694 original size:26 final size:26
Alignment explanation
Indices: 2242653--2242703 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2242643 GTTGACTTAG
2242653 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
* * *
2242679 GCATACGGTGTTCATTCCCGGTCTA
1 GCATACGGAGTCCATTCCCAGTCTA
2242704 CGCCCTAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:2243105 original size:45 final size:45
Alignment explanation
Indices: 2243009--2243123 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 45
2242999 TGGGGCTCAA
* *
2243009 CATGTGCTGATAGTGGTCGAGGCAATCGCCCGCACCACAGCCCAG
1 CATGTGCTGATGGTGGTCGAGGCAATCGCCCCCACCACAGCCCAG
* * * ** * *
2243054 CATGTGCCGATGGTGTTCGATGCAATCGCCCCCACCAGGGGCCAT
1 CATGTGCTGATGGTGGTCGAGGCAATCGCCCCCACCACAGCCCAG
* *
2243099 CTTGTGCTGATGGTGGTTGAGGCAA
1 CATGTGCTGATGGTGGTCGAGGCAA
2243124 CCGTTCACAC
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (45 bp):
CATGTGCTGATGGTGGTCGAGGCAATCGCCCCCACCACAGCCCAG
Found at i:2249927 original size:26 final size:26
Alignment explanation
Indices: 2249898--2249950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2249888 GTTGACTTAG
2249898 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
2249924 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2249950 G
1 G
2249951 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Done.