Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 2 of 120
Found at i:123690 original size:26 final size:26
Alignment explanation
Indices: 123654--123706 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
123644 GTTGACTTAG
*
123654 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
123680 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
123706 G
1 G
123707 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:124586 original size:26 final size:26
Alignment explanation
Indices: 124557--124609 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
124547 GTTGACTTAG
124557 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
124583 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
124609 G
1 G
124610 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:125486 original size:26 final size:26
Alignment explanation
Indices: 125456--125508 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
125446 GTTGACTTAG
*
125456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
125482 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
125508 G
1 G
125509 AACGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:126392 original size:26 final size:26
Alignment explanation
Indices: 126353--126403 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
126343 GTTGACTTAG
126353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
126379 GCATACAGGA-TTCATTCCCAGTCTA
1 GCATAC-GGAGTTCATTCCCAGTCTA
126404 TGATTGAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:127293 original size:26 final size:26
Alignment explanation
Indices: 127256--127308 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
127246 GTTGACTTAG
* *
127256 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTAATTCCCAATCTAA
*
127282 GCATACGAAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAATCTAA
127308 G
1 G
127309 ATCGGACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAATCTAA
Found at i:128192 original size:26 final size:26
Alignment explanation
Indices: 128156--128208 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
128146 GTTGACTTAG
* * *
128156 GCATACGAAGTTTATTCCTAGTTTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
128182 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
128208 G
1 G
128209 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:129553 original size:26 final size:26
Alignment explanation
Indices: 129517--129566 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
129507 GACTTAGGCT
129517 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
*
129543 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
129567 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:130460 original size:25 final size:26
Alignment explanation
Indices: 130413--130468 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
130403 GTTCACTTAG
130413 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
* *
130439 GCATACGG-GTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
130464 GCATA
1 GCATA
130469 TGAAGTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:130486 original size:26 final size:25
Alignment explanation
Indices: 130413--130490 Score: 75
Period size: 25 Copynumber: 3.0 Consensus size: 25
130403 GTTCACTTAG
* **
130413 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCAAAGTCTAA
* **
130439 GCATACGGGTTCATTCCTAGTCTAA
1 GCATACGAGTTCATTCAAAGTCTAA
*
130464 GCATATGAAGTTCATTCAAAGTCTAA
1 GCATACG-AGTTCATTCAAAGTCTAA
130490 G
1 G
130491 ATCGAAGTAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 22 0.50
26 22 0.50
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (25 bp):
GCATACGAGTTCATTCAAAGTCTAA
Found at i:131355 original size:924 final size:924
Alignment explanation
Indices: 129523--131363 Score: 2704
Period size: 924 Copynumber: 2.0 Consensus size: 924
129513 GGCTTACGAA
* ** *
129523 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTA
1 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCAAAGTCTAAGATCGAACCAGACCGAGGGTTA
* * ** *
129588 CGATAGCACATGTGGGCTCGGGGCATGTGCTAGTGTCGCATTTTTCTTCGTTGGGGCACCATCGT
66 CGACAGCACATGTGGGCTCGGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
* *
129653 CAGAGCATCGTCGGAGAACCTGACCGACGATATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
131 CAGAGCATCGCCGAAGAACCTGACCGACGATATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
* * *
129718 TGCGGACAAGATGTGCTATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
196 TGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
129783 ACCTTGAGAACTCACCCCCCTTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
261 ACCTCGAGAACTCACCCCCCTTTAAGGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCAA
129848 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTT
326 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
129913 ACCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTTGGGCCAAA
391 ACCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
129978 ACTCCTTCCAAAAATATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAG
456 AATCCTTCCAAAAATATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAA
* *
130043 AAAACGAGTCGTTTCGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
521 AAAACGAGTCATTTCGCCACGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAA
* *
130108 GCCATAAAAATGGCATTGGCATGCAGAATATATGAAGATCTGCCTAAACCCACCTACCACCCTAT
586 GCCATAAAAATGGCATTGGCACGCAGAATATATGAAGATCTGCCTAAACCCACCTACCAACCTAT
* * * *
130173 CGATCCACAGCTTGCACATCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCGTCCGCCCGCTCTTT
651 CGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCACCCGCTCTTT
* * *
130238 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGACTGGATCGGATCGAGGGTTGC
716 TCATCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGACTAGATCGGATCGAGGGTTGC
* * * * *
130303 GGCAGCAGGATCGGCAGCACGTAGCAAGGGACCCAGCTGATCCCTGGCTTGCATATCTCGCCCCT
781 GGCAACAGGATCAGCAGCACGTAGCAAGGGACCCAGCCGATCCCTGACTTGCATACCTCGCCCCT
* * *
130368 CTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGAGTTCACTTAGGCATACGGAGTCCATTCCCA
846 CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTCACTTAGGCATACAGAGTCCATTCCCA
*
130433 GTCTAAGCATACGG
911 ATCTAAGCATACGG
* * ** * *
130447 GTTCATTCCTAGTCTAAGCATATGAAGTTCATTCAAAGTCTAAGATCGAAGTAGACTGAGGGTTG
1 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCAAAGTCTAAGATCGAACCAGACCGAGGGTTA
* * *
130512 C-AGCAGCACATGCTGGGCTC-GGGCATGTGCTGGTGCCGGATTTTTCTTTGCCGGGGCACCATC
66 CGA-CAGCACATG-TGGGCTCGGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATC
* *
130575 GCCAGAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTTCCGACGATCGGGGGGCCGGGGGG
129 GCCAGAGCATCGCCGAAGAACCTGACCGACGATATTGGGGTTCCGACGATCGGGGGGCC-GGGGG
*
130640 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
193 GTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
130705 CAAACCTCGAGAACTCACACCCCC-TTGATGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAG
258 CAAACCTCGAGAACTCAC-CCCCCTTTAAGGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAG
* * *
130769 CCAATAAAGTGTCTGAAATGGGGGCTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
322 CCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGT
**
130834 TTTTGGCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
387 TTTTACCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
*
130899 CAAAAATCCTTCCGAAAAA-ATTTTAACAAATCTCGAACCGCAAAAAGTTTCAAAAATAATGAAA
452 CAAAAATCCTTCC-AAAAATATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATAATGAAA
* * *
130963 AATAAAAAATGAGTCATCTT-GCCATGAAACTTCATGTGAAGGCTCAAGGGACCATTGTATGAAT
516 AATAAAAAACGAGTCAT-TTCGCCACGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAAT
* *
131027 TTACAAGCCATAAAAATGGCATTGGCACGCAGAA-ATATGAAGATGTGTCTAAACCCACCTACCA
580 TTACAAGCCATAAAAATGGCATTGGCACGCAGAATATATGAAGATCTGCCTAAACCCACCTACCA
*
131091 ACCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG-CCTACCC
645 ACCTATCGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCC-ACCC
*
131155 GCTCGTTTT-GTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGA-CAGGAT
709 GCTC-TTTTCATCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGACT-AGATC-GGAT
* * * *
131217 TGAGGGTTGCGGCAACAGGATCATCAGCACGTAG-AGGGGGACCCGGCCGAT-CCTCGACTTGTG
771 CGAGGGTTGCGGCAACAGGATCAGCAGCACGTAGCA-AGGGACCCAGCCGATCCCT-GAC-T-TG
* * *
131280 CAT-CCT-GCCTCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGCA-TTGACTTAGGCATA
832 CATACCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTG-AGTTCACTTAGGCATA
*
131342 CAGAGTTCATTCCCAATCTAAG
896 CAGAGTCCATTCCCAATCTAAG
131364 ATTGGATCAG
Statistics
Matches: 820, Mismatches: 82, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
923 9 0.01
924 399 0.49
925 395 0.48
926 17 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (924 bp):
GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCAAAGTCTAAGATCGAACCAGACCGAGGGTTA
CGACAGCACATGTGGGCTCGGGGCATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGC
CAGAGCATCGCCGAAGAACCTGACCGACGATATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
TGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACCCCCCTTTAAGGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCAA
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTT
ACCTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
AATCCTTCCAAAAATATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAA
AAAACGAGTCATTTCGCCACGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACGCAGAATATATGAAGATCTGCCTAAACCCACCTACCAACCTAT
CGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGTCCACCCGCTCTTT
TCATCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGACTAGATCGGATCGAGGGTTGC
GGCAACAGGATCAGCAGCACGTAGCAAGGGACCCAGCCGATCCCTGACTTGCATACCTCGCCCCT
CTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTCACTTAGGCATACAGAGTCCATTCCCA
ATCTAAGCATACGG
Found at i:132009 original size:4 final size:4
Alignment explanation
Indices: 132000--132025 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
131990 CCGACGTAGT
132000 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
132026 TTCTTTCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:133355 original size:884 final size:879
Alignment explanation
Indices: 129540--135660 Score: 7332
Period size: 884 Copynumber: 6.9 Consensus size: 879
129530 CCCAGTCTAA
**
129540 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTACGATAGCACATG-TGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTACGGCAGCACATGCTGG
* * ** *
129603 GCTCGGGGCATGTGCTAGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCAGAGCATCGTCGGA
66 GCTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGA
** * *
129668 GAACCTGACCGACGATATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGGACAAGATGTG
130 GAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
129733 CTATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
129798 -CCCCCTTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 ACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
129862 TGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
129927 GTGCATGCCAACAAAAATACAGGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * *
129992 TATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT-T
453 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
130056 TCGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 T-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
130121 CATTGGCATGCAGAATATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
582 CATTGGCACGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
130186 GCACATCCCGTCTCTTTGGTCGACGTAGTGCCCGCCCG---TCCGCCCG--CTC-T-TTTCATCG
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCACCCGCCCGCCCGCTTGTTTCGTCG
* *
130244 GTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGA-CTGGATCGGA-TCGAGGGTTGCGGCA
711 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACT-GAGGGTTGCGGCA
* * * * * ** *
130307 GCAGGATCGGCAGCACGTAGCA-AGGGACCCAGCTGATCCCTGGCTTGCATATCTCGCCCCTCTG
774 GCAGGATCGACAGCACGCAG-AGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTG
* * *
130371 GCCGGTTGAGCGCCCGCACGCTCGTTTCGTGAGTTCACTTAG
838 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** *
130413 GCATACGGAGTCCATTCCCAGTCTAAGCATACGGGTTCATTCCTAGTCTAAGCATATGAAGTTCA
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GG---A--CCGAG----A-CCGA-G-GGTT-A
* * *
130478 TTCAAAGTCTAAG-ATCGAAGTAGACTGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGC
50 --C---GGC--AGCA-C--A-T-G-CT--GGGCT-C-G--G-GCATG-T--GCT-----------
* * * *
130542 TGGTGCCGGATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATCGCCGAAGAACCTGACCGGCGG
81 -GGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACC-GCGG
*
130607 TATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
144 CATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
130672 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGATGAG
208 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
130737 CATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCAATAAAGTGTCTGAAATGGGGGCTCTTTTTT
273 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
130802 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATACCAAAAAA
338 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
130867 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAACAAATCT
403 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT
* * * *
130932 CGAACCGCAAAAAGTTTCAAAAATAATGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCA
468 CGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
130997 TGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
533 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
131062 TATGAAGATGTGTCTAAACCCACCTACCAACCTATCGATCCACAGCTTGCGCATCCCGTCTCTCT
598 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
131127 GGCCGACGTAGTGCCCACCCGCCTA----CCCGCTCG--T-TTT-GTCGGTTGGATTAGGCATAC
663 GGCCGACGTAGTGCCCGCCCGCC-ACCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATAC
* * * *
131184 GGAGTTCATTCCCAGTCTAAGATCAGACAGGATTGAGGGTTGCGGCAACAGGATC-ATCAGCACG
727 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACG
* * * * * *
131248 TAGAGGGGGACCCGGCCGAT-CCTCGACTTGTGCATCCTGCCTCTCTGGTCGGCTGAGCGCCCGC
791 CAGAGGGGGACCCGGCCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* **
131312 ACGCTCATTTCGTGCATTGACTTAG
855 ACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
131337 GCATACAGAGTTCATTCCCAATCTAAGATTGGATC-AGAGCGATGGTTACGGCAGCACATGCTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTACGGCAGCACATGCTGG
* *
131401 GCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCA---T-----CA---CCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAG
* **
131455 AAGCTGATTGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGCGCACATGATGTG
131 AACCTGA-CCGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
131519 CGATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCACGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
131584 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
131649 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGCTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
131714 TGCACGCCAACAAAAATACAAGGATCACATCTACTAAGTTTAGGGCTAGAACTCCTTTCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* *
131779 ATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCT
131843 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
131908 ATTGGTATGCCGAAATATGAAGATGTGCCTAAACCCACCTATCACACTATCGATCCACGGCTTAC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
131973 GCAACCCGTCTTTGTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTTCTTTCGTCGG
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCACCCGCCCGCCCGCTTGTTTCGTCGG
* * * * * ** * *
132038 TTGGCTTAGGCATACGGAGTCCA-T-CCGGTCTAAGATCGAACTGAACAAAGGGTTGCGGTAGTA
712 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCA
* ** ** * * * *
132101 GGATCGGCAGCACAAAGAGGGGGACCCGATCGAGCCCCGGTTTACGCATCCCGCCCCTCTGGCCG
777 GGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
132166 GCTGAGCGCCAGCACGCTCGTTTCGTTGGTTGACTTAG
842 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * *
132204 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACCGAGGGTTGTGGCAGTAGATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
132268 ACTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCCGGGCACCATCGTCGGAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAG
* **
132333 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCATACATGATGTG
131 AACCTGACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * * * *
132398 CAAAGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
132463 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGCAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
132528 GGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
132593 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGG
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * ** ** *
132658 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGCAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
132723 GCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAAT-GCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
132787 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCAACATACCACCCTATCGATTCACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
132852 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCCCCTGCCCGCTTGTTTCGT
649 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCACCCG---CCC-GCCCGCTTGTTTCGT
*
132917 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGGCTGAGGGTTGCGGCA
709 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCA
* * * * *
132982 GCAGGATTGATAGCACGCATAGGGGGACCCGGCCTATCCCTGGCTTGCGCATCCCGCCCCTCTAG
774 GCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
* *
133047 CCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAG
839 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
133088 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGA-ACCGAGGGTTATGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTACGGCAGCACATGCTGG
* * * *
133152 GCTCGGGCATGTGCTGTTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCTTCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAG
* * * * * * * * *
133217 AACTTGACCTGCGACATTGGGGTTTCGGCGATTGGGGGGTCGAGGGTGTGTGTGCACATGATGTA
131 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
133282 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
133347 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
133412 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
133477 TGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGACAAAATTCCTTCCAAAATA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * ** * *
133542 ATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTG
454 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
133607 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * ** *
133672 TTGGTATGTAGAAATATGAAGATGTG-CTCAAAAACACCTACCACCCTATCGATCCACGGATTGC
584 TTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * * * * *
133736 GCATCCCGTCTCTGTGGTAGGCGTAGTGCCTG-CCG--GCCCGGCCGCCTGCTCGTTTCGTCGGT
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCACCCGCCCGCCCGCTTGTTTCGTCGGT
* * ** * * *
133798 TGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCAGACCAAACGGAGGGTTGCGGTAGCAA
713 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAG
* * * * * * *
133863 GATTGTCAGCACACAGAGGGGGACCCGGCCGATCCCTGGCTTGTGCATCCCACCCCTCTAGCCGA
778 GATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
133928 CTGAGAGCCCTCATGCTCGTTTCGTGAGTTGACTTAG
843 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
133965 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-G---AGAC
* * * *
134030 CGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCATATTTCTTCGCCGGGG
41 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * *
134095 CACCATCGTCGGAGCATCGCCAGAGAACTTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGC
106 CACCATCGTCAGAGCATCGCCGGAGAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGC
* **
134160 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCGTATATTATCCCCCTATC
170 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
134225 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTC
235 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
134290 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
300 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
134355 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTT
365 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTT
* ** * *
134420 TGGGGCCAAAATTCCTT-CAAAAAAATTTTAAAAAATCTCGAACCATAGAAAGTTTCAAAAATCG
429 TGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCA
* * * * *
134484 TGAAAAATACAAAACGAGTCATCTTGCCATGAAATTTCACGTGAAGGCTTAAGCGCCCATTGTAT
494 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * *
134549 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGCG-CTGAAACACACCT
559 GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCT
* * * *
134613 ACCACCCTATCGATCCACGGCTTGCGCATCCCATTTCTCCGGCCGACGTAGCGCCCG--C-CCAC
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAC
* * *
134675 CCGCCCGCCCGCTCGTTT-GTTCGGTTGGCTTAGGCCTACGGAGTTCATTCCCAGTCTAAGATCA
688 CCGCCCGCCCGCTTGTTTCG-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
** * * * * *** **
134739 GAATGGACCGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAGTGGGACCCAATCGA-CACCCA
752 GACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATC-CCTG
* * * * * *
134803 GCTTGTGCAT-----CCCTCTGGCCGGCTGAGCGCCTGCAAGCTTGTTTCGTGAGTTGACTTCG
816 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
134862 GCATAC-GACTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-GA---GAC
* *
134926 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGG
41 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
** * * * *
134991 CACCATCACCGGAGCATCACCGGAGAACCTGACCGCCGGCATTGGGGTTCTGGCGATCAGGGGGG
106 CACCATCGTCAGAGCATCGCCGGAGAACCTGACCG-CGGCATTGGGGTTCCGACGATC-GGGGGG
* * * * *
135056 CCGGGGGGTGTACGCACATGATGTGCGATGCGTTCTTGTACTTGGCCCTTATATTGGCCCCCTGT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
135121 CCCTCATCAAA-CTGTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 CCCTCATCAAACCT-CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
135185 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * * *
135250 TTCAAGTTCTTAGCTGAATTGTTTTATGCATGCCAACAAAAATAGAAGGATCGCGTCTACCATGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
135315 TTGGGGCCAAAATTACTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTAAAAAATC
428 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATC
*
135380 ATCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
493 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
135445 TGAATTTACAAGCCACAAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
135510 ACCACCCTATCAATCCATGGCCTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG---C
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAC
* * * * * *
135572 CCGCCCACTCGCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGG
688 CCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
*
135637 ACCGGACCGAGGGTTGCGGCAGCA
753 ACCGGACTGAGGGTTGCGGCAGCA
135661 CATGCTGGGC
Statistics
Matches: 4549, Mismatches: 550, Indels: 274
0.85 0.10 0.05
Matches are distributed among these distances:
860 1 0.00
861 458 0.10
862 41 0.01
863 8 0.00
865 9 0.00
867 201 0.04
868 6 0.00
869 26 0.01
870 1 0.00
873 52 0.01
874 2 0.00
875 3 0.00
876 2 0.00
877 189 0.04
878 151 0.03
879 364 0.08
880 1 0.00
881 10 0.00
882 41 0.01
883 9 0.00
884 630 0.14
885 86 0.02
886 1 0.00
887 3 0.00
888 5 0.00
889 4 0.00
890 2 0.00
891 1 0.00
892 3 0.00
893 4 0.00
895 4 0.00
896 210 0.05
897 551 0.12
898 5 0.00
899 3 0.00
900 4 0.00
901 5 0.00
902 532 0.12
903 163 0.04
905 5 0.00
906 2 0.00
907 1 0.00
908 4 0.00
909 4 0.00
910 2 0.00
911 1 0.00
912 3 0.00
915 2 0.00
916 1 0.00
918 1 0.00
921 2 0.00
923 6 0.00
924 325 0.07
925 391 0.09
926 8 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAGACCGAGGGTTACGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCGCCGGAG
AACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCACCCGCCCGCCCGCTTGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCAGGAT
CGACAGCACGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:134001 original size:26 final size:26
Alignment explanation
Indices: 133965--134017 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
133955 GTTGACTTAG
*
133965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
133991 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
134017 G
1 G
134018 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:136636 original size:438 final size:438
Alignment explanation
Indices: 135821--136699 Score: 1431
Period size: 438 Copynumber: 2.0 Consensus size: 438
135811 CCTCATATTA
135821 GCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAG
1 GCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAG
*
135886 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAAGGACACTTTTTTCAAATGGTCACAAAATC
66 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAAGGACACTTTTTTCAAATGGTCACAAAATC
* * *
135951 TTGTACACTTTGAGTTTTTAGCTAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
131 TTCTACACTTCGAGTTTTTAGCTAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
*
136016 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTT
196 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTA
* * * *
136081 GAAAATCGTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
261 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGAC
** * * *
136146 CATTGTATGAATTTGTAAGCCATAAAAATGGCTTTGGCATGCAGAAATATGAAGATGTACCTAAA
326 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTACCAAAA
* * *
136211 CCCACCTACTC-CACTATCGTTCCACAGT-TTGCATATCCTGTCTCTTTG
391 CCCACCTAC-CACACTATCGATCCAC-GTCTTGCACATCCTGTCTCTCTG
* *
136259 GCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
1 GCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAG
**
136324 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
66 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAAGGACACTTTTTTCAAATGGTCACAAAATC
*
136389 TTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
131 TTCTACACTTCGAGTTTTTAGCT-AAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
** *
136454 TACCAAGTTTGGGGTGAAAACTCCTTCCGAAAGAATTTT-AAAAATCCCGAACCCCAAAAAGTTT
195 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTT
*
136518 AAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGA
260 AAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGA
* *
136583 CCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCAGGCAGAAATATGAAGATGTGCCAAA
325 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTACCAAA
* * *
136648 ATCCACCTACCACCCTATCGATCCACGTCTTGCGCATCCTGTCTCTCTG
390 ACCCACCTACCACACTATCGATCCACGTCTTGCACATCCTGTCTCTCTG
136697 GCC
1 GCC
136700 AACATAGTGC
Statistics
Matches: 407, Mismatches: 31, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
437 3 0.01
438 329 0.81
439 75 0.18
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (438 bp):
GCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAAGGACACTTTTTTCAAATGGTCACAAAATC
TTCTACACTTCGAGTTTTTAGCTAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTA
AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAGATGTACCAAAA
CCCACCTACCACACTATCGATCCACGTCTTGCACATCCTGTCTCTCTG
Found at i:136934 original size:26 final size:26
Alignment explanation
Indices: 136904--136956 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
136894 GTTGACTTAG
* * *
136904 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
136930 GCATACGGATTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
136956 G
1 G
136957 ATTGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:137843 original size:26 final size:26
Alignment explanation
Indices: 137807--137856 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
137797 GACTTAGGCA
*
137807 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
137833 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
137857 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:137997 original size:898 final size:897
Alignment explanation
Indices: 136256--143955 Score: 10212
Period size: 898 Copynumber: 8.6 Consensus size: 897
136246 TCCTGTCTCT
*
136256 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
*
136321 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
136386 ATCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
130 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* ** * **
136451 ATCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAGAATTTT-AAAAATCCCGAACCCCAAAAAG
195 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
136515 TTTAAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
260 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
136580 AGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCAGGCAGAAATATGAAGATGTGCC
325 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * ** *
136645 AAAATCCACCTACCACCCTATCGATCCACGTCTTGCGCATCCTGTCTCTCTGGCCAACATAGTGC
390 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
136710 ACGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGA
455 CCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * * * * *
136775 TCAGACCAAACTGAGGGTTGTGGCAGCAGGATCGACAGCACGTAGAGGGGACCCGACCGATCCCC
520 TCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGACCCGGCCGATCCCT
*
136840 GGCTTGTGCATCCCGCCCCTC-GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
585 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
136904 GCATATGGAGTTCATTTCCAGTCTAAGCATACGGATTTCATTCCCAATCTAAGATTGGACCGGAC
650 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * *
136969 CGAGGGTTGCGGCACCATATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGA
715 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* **
137034 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGC-AGCATTGGGGTTCCGACGATCGGGGGG
780 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGA-CATTGGGGTTCCGACGATC-GGGGG
*
137098 GCCGGGGGTGGGTGTG-GCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
843 GCC-GGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
137154 TTGGCCCCCTATCCCTCATCAAACCTCGACAACTCACACCCCTTAAAGAGCATTTGAGATTTTAT
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
137219 AGGTTTGCTGCCAATAGCCATTAAATTGTCTGAAAAGGGGACACTTTTTTCAAATGGTCATAAAA
66 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
137284 TCTTCTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGTATGCCAACAAAAATACAAGGATCATG
131 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
* * * * *
137349 TCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAGAGTTTTAAAAAATCCCAAACCGCAAAAAGT
196 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* *
137414 TTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCTTAAGG
261 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
137479 GACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATGTGAAGATGTGCCT
326 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
*
137544 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCC
391 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
** * * * *
137609 CGCTTGCCCGCCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTAATT-CTCAGTCTAAGA
456 CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAGA
* * * *
137673 TCGGACCAGACTGAGGGTTGCAGCAGCATGATCGATAGCACGCAGAGGGGCACCCGACCGATCCC
520 TCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGG-ACCCGGCCGATCCC
* * * * * * *
137738 TGACTTGCGCGTCTCACCCCTCTGGCCGGTTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
584 TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* *
137803 GGCATACGGAGTTCATTCCCAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA
649 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * * *
137868 CAGAGGGTTG-GTCAGCTCATGCTGGGCTCGAGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGG
714 CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * * *
137932 GCACCATCGCCAGAGCATCACCGGAGAACCTGACCGACGACATTGAGTTTCCGACGATCGGGGGG
779 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGG
* * * * *
137997 CC-GGGGGGCGTGCCCACATGATGTGCGTTAGGTACTGGTACTTGGCCCTTATA
844 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
138050 TTGGCCCCCTGTCCCTCATCAAACATCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTA
*
138115 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
138180 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATTCATGCCAAAAAAAATACAAGGATCAT
130 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* *
138245 GTCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
195 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
** * *
138310 TTTTGAAAATAGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
260 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* **
138375 GGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
325 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * **
138440 TAAACCAACCTACCACCCTATCGATCCCCGGCTTGCGCATCCTGTCTCTCTGGCCGATGTAGTGC
390 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * *
138505 CCGCCCACCCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTACATTCCTAGTCT
455 CCG----CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCT
* * * * * *
138570 AAGATTGGACCAGA-TCGAGGGTTGCGACAGTAGGATCGACAGCATGTAGAGGAGGACCCGGTCG
516 AAGATCGGACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG-GGACCCGGCCG
* * *
138634 ATCCCCGGCTTGCGCATCCCG-CCCTCTAGCCGGCTGAGCGCCCGCAGGCTCGTTTCATGGGTTG
579 ATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
138698 ACTTAGGCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATT-CCAATCTAAGATTGGA
644 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
** * * * ** * *
138762 CTAGACTGAGGGTTGCGGCAGCAAATGCCAGGCTCGGGCATGTGCTGGAGCCGTATTTTTCTTCG
709 CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * ** * * *
138827 CCGAGGCACCATCACCGAAGCAGCGTCGGAGAACCTGACCGGTG-GATTGGGGTTCCCACGATCG
774 CCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC-
*
138891 GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
838 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
138951 TTGGCCCCCTATCCCTGATCAAACCTTGAGAACTCACACCCTCTTATAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTTTA
* *
139016 CAGGTTTGCTGCCAATAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
139081 ATCTTCTACACTTTGAGTTTTTAACTGAAATTTTTT-TGCATGCCAACAAAAATATAAGGATCAC
130 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-
* * * *
139145 T-TCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTTAAAAATCTCGAACCGCAAAAA
194 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * *
139209 GTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGGAACTTCAGGTGAAGGCTTA
259 G-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
139273 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATGCAGAAA-AGTGAAGATGT
323 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA-TGAAGATGT
* * *
139337 GCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAT
387 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG
* * * * *
139402 TGCCCGCCCGCTCGCCTGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
452 TGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
** * * * * ** ** *
139467 AGATCGGACCAGACCAAGGGTTGTGACAGCAGGA-CCAGTAGCACATAGAGGTGGACCCTACTGA
517 AGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGG-GGACCCGGCCGA
* * * * * *
139531 TCCTCAT--TTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCACTCGCACGCTCGTTTCGTGGGTT
580 TCC-C-TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* *
139594 GACTTAGGCATAC-GAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGG
643 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
** * * *
139658 ACCGGATTGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTT
708 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * *
139723 GCTGGGGCACCATTGCCGGAGCATCTCCGGAAAACCTGACCGGCGGCATTGGGGTTCCGGCGATT
773 GCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC
*
139788 GCGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATA
838 G-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
139849 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
* *
139914 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
139979 ATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACATAAAA-ACAAGGATAA
130 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCA
** * **
140043 TGTCTACCAAGTTT-GCACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACAATAAAAA
194 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* *
140107 GTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
259 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
140172 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGC
324 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * *
140237 CTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTA
389 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-
* * ** * *
140302 CCCGCCCGTCCGCCCGCCCGCTCATTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
453 ---GCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
* * * * * * *
140367 TCAA-ATCGAACCAGACCGAGGGTTGTGGCAGCAAGATCAACAGCACACAGAGGGGGACCTGGCC
515 T-AAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA-GGGGACCCGGCC
* * * * * * * *
140431 GATCCCTGGCTTTCGCGTCCCACCCCTCTGGCCGGTTGAGTGCCCGTACGCTCATTTCATAGGTT
578 GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
** * * *
140496 GACTTAGGCATACGGAGTTCATTCTAAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGA
643 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * ** * *
140561 ATCAGACCGAGGGTTGCGGTAGCACTTGCAGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
708 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * * * *
140626 GCCGAGGCACCATCGTCGGAGCATCACCGAAGAACCTAACCTGCGACATTGGTGTTCCGGCGATC
773 GCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC
* * * * *
140691 GGGGGGCCGGGGGGGTATGCGAACATGATGTGTGATGGGTGCTGATACTTGGCCCATATA
838 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* ** *
140751 ATATCCCCCTATCTCTCATCAAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTA
* * * * *
140816 CA-G---GCAGCTAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTAAAATGGTCACAAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
140877 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAATAATACAAGGATCAC
130 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* ** *
140942 GCCTACCAAGTTTTTGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
195 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
141007 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAC
260 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
141072 GGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCACT-TAGAAATATGAAGATGTGC
325 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGC
* *
141135 CTAAACGCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGT-
389 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
*
141199 ---GCCCGCCCGCCCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
454 CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
* * *
141261 ATC-G---A-ACTGA-GGTTGCGGTAGCAGGATC-AGCAGCACGTAGAAGGGGACCTGGCCGATC
519 ATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAG-AGGGGACCCGGCCGATC
*
141319 CCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
582 CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* * *
141384 TAGGCATAC-GAGTTCATTCCCAATCTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCAGACCG
647 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * *
141448 AACCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCG
712 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
* * * * * *
141513 GGGCACCATCGTCGGAGCATCACCGAAGAACCTGACCGACGGCATTAGGGTTTC-AGCGATCGGA
777 GGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGA-CGATCGG-
* * *
141577 GGGGCCTGGGGTGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATA
840 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
141635 CTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
* *
141700 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGAATGGGGACATTTTTTTCAAATGGTCACAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAA
*
141764 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
129 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
** * * * *
141829 TGTCTACCAAGTTTGGGGTGAAAGCTCCTTCCGAAAAAATTTTAAAAAATCCAGAACCATAATAA
194 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * * * *
141894 GTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTCCCATGAGACTTCACGTGAAGGCTTAA
259 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
141959 GGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGG
324 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* *
142024 CTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGGTGTAGTG
389 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * *
142089 CCCGCCCGCCCGCCTGCTTGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCGTAGTA
454 CCCGCCCGCCCGCC--C--GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
* ** ** * *
142154 TAAGATCAGACTGGACCAAGGGTTGCGGCAGTAGGATC-AGCAGCATGCAGAAGGGGACCCGGCC
515 TAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAG-AGGGGACCCGGCC
* * * *
142218 GATCTCC-GGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGCCCACACGTTCGTTTCATGGGT
578 GATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGT
* * * *
142282 TGACTTAGGCATACGGAGTTCATTCCCGGTCTAA-CAATACGGAGTTCTTTCCTAGTCCAAGATC
642 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
142346 GGAGCC---TCAAGTGTTACGACAGCACATCCTAGGCTCGGGCATGTGCTGCTGTCGCATTTTTC
706 GGA-CCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * * *** * * * **
142408 TTCACCGAGGCACCAACGTCGGAGCATCGTTGAAGAACCTGACAGGC-AGCATTAGGGTTCCGGT
770 TTCGCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGA-CATTGGGGTTCCGAC
* * * *
142472 GATCGTGGGGGCCGGGTGGGGTGTGCACCCATGATGTGCGATGGGTGCTGGTAATGGGCCCTTAT
834 GATCG-GGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
142537 A
897 A
* * *
142538 TTGGCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCGCCTTAATGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGAGATTTTA
** * * * * *
142603 TGGGTTTCCTACCAGTAGCCATTGAAGTGTCTGAAATGGAGACATTTTTTTCAAATGGTCACAAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
142668 ATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
130 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * * * * *
142733 GTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTGAGAAATCCCGAACCGCAAAAAG
195 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * *
142798 TTTCAAAAATCATGAAAAATAGAGAACTAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAG
260 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * * * *
142863 GCACCATCGTATGACTTTACAAGCCAT-AAAATGGCATTGGCACT-TAGAAATATGAAGGTGTGC
325 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGCAGAAATATGAAGATGTGC
** *
142926 CTAAAAGCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
389 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
*
142991 CCCACTCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCTAGTC
454 --C-C-CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
* * * *
143056 TAAGATC-G----GACTGA-GGTTGCGGTAGCACGATCGGCAGCACGCAGAGGGGGACCTGGCCG
515 TAAGATCGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA-GGGGACCCGGCCG
* * * * *
143115 ATCCCCAGG-TTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAGGCTCGTTTCATGTGTT
579 AT-CCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * *
143179 GACTTAGGCATAC-GAGTTCATTTCCAGTCTAAGCATACGGACTTCATTCGCAGTCTAAGATCAG
643 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
143243 ACCGGTCTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTC
708 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
143308 GTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATCGGGGTTTCGACGATC
773 GCCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC
* * * * * *
143373 GGGGGGGCCTGGGGGGTGTGTGCACATCATGTGCGATGGATTCTAGTACTTGGCCCTTATA
838 -GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
143434 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTA
1 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTA
* *
143499 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA-TTTTTTCCAAATGGTCAGAA
65 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAA
* * * *
143563 AATCTTGTACACTTCGACTTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
129 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
*
143628 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
194 TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
** ** *
143693 GTTTTGAACGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAA
259 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* ***
143758 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACATAGAAATATGAAGATGTGC
324 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * * * * *
143823 CTAAACCCAACTACGACCATATCGATCCACGGCTTGCG-ATCCCGTTTCTCTGGCCAGCTTAGTG
389 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * *
143887 CCCGCCCGCCCGTCCGCTCGCTCATTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
454 CCCGCCCGCCCG--C-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
143952 TAAG
515 TAAG
143956 CATACGGAGT
Statistics
Matches: 5972, Mismatches: 721, Indels: 220
0.86 0.10 0.03
Matches are distributed among these distances:
883 157 0.03
884 214 0.04
885 7 0.00
886 1 0.00
887 1 0.00
888 255 0.04
889 94 0.02
890 56 0.01
892 10 0.00
893 12 0.00
894 4 0.00
895 59 0.01
896 742 0.12
897 957 0.16
898 995 0.17
899 334 0.06
900 537 0.09
901 317 0.05
902 529 0.09
903 628 0.11
904 48 0.01
905 3 0.00
906 12 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
CGGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGACCCGGCCGATCCCTG
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC
GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGC
ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCC
GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
Found at i:139639 original size:26 final size:25
Alignment explanation
Indices: 139601--139652 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
139591 GTTGACTTAG
139601 GCATACGAGTTCATT-CTCAGTCTAA
1 GCATACGAGTTCATTCCT-AGTCTAA
139626 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAC-GAGTTCATTCCTAGTCTAA
139652 G
1 G
139653 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 6 0.24
26 17 0.68
27 2 0.08
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (25 bp):
GCATACGAGTTCATTCCTAGTCTAA
Found at i:140128 original size:26 final size:26
Alignment explanation
Indices: 140076--140133 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
140066 CTCCTTCCGA
* *
140076 AAAAATTTTAAAAAATCTCGAACAAT
1 AAAAAGTTTAAAAAATCTCGAAAAAT
140102 AAAAAGTTTAAAAAATCAT-GAAAAAT
1 AAAAAGTTTAAAAAATC-TCGAAAAAT
140128 AGAAAA
1 A-AAAA
140134 CGAGTCGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAT
Found at i:140555 original size:26 final size:26
Alignment explanation
Indices: 140503--140555 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
140493 GTTGACTTAG
*
140503 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
140529 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
140555 G
1 G
140556 ATTGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:143215 original size:25 final size:26
Alignment explanation
Indices: 143186--143237 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
143176 GTTGACTTAG
*
143186 GCATAC-GAGTTCATTTC-CAGTCTAA
1 GCATACGGACTTCA-TTCGCAGTCTAA
143211 GCATACGGACTTCATTCGCAGTCTAA
1 GCATACGGACTTCATTCGCAGTCTAA
143237 G
1 G
143238 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGACTTCATTCGCAGTCTAA
Found at i:143965 original size:26 final size:26
Alignment explanation
Indices: 143929--143981 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
143919 GTTGGCTTAG
143929 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
143955 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
143981 G
1 G
143982 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:144859 original size:26 final size:26
Alignment explanation
Indices: 144823--144874 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
144813 GTTGACTTAG
144823 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
144849 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
144875 AATCGGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:145764 original size:26 final size:26
Alignment explanation
Indices: 145728--145799 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
145718 TGACTTAGGC
*
145728 ATACGAAGTTCATTCCCAGTGTAAGT
1 ATACGGAGTTCATTCCCAGTGTAAGT
145754 ATACGGAGTTCATTCCCAGTGTAAGT
1 ATACGGAGTTCATTCCCAGTGTAAGT
*
145780 ATATGGAGTTCATTCCCAGT
1 ATACGGAGTTCATTCCCAGT
145800 CCAAGATCGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTGTAAGT
Found at i:146624 original size:26 final size:26
Alignment explanation
Indices: 146588--146640 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
146578 GTTGACTTAG
146588 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
146614 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
146640 G
1 G
146641 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:147559 original size:340 final size:340
Alignment explanation
Indices: 146939--147612 Score: 1233
Period size: 340 Copynumber: 2.0 Consensus size: 340
146929 GTCTAAAATG
*
146939 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTCTTTGT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTAAATTTCTTTGT
*
147004 ACATGCCAACAAAAATAAAAGGATCACGTCTACCAGGTTTAGGGCCAAAAATCCATCCGAAAAAA
66 ACATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCATCCGAAAAAA
*
147069 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAGAACGAGTCGTCTTG
131 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAGAACGAGTCGTCTTG
147134 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
196 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
147199 GCACGTAGAAATATGAAGATGTG-CATAAACCCACCAAACACCCTATCGATCCACGGCTTGCGCA
261 GCACGTAGAAATATGAAGATGTGCCA-AAACCCACCAAACACCCTATCGATCCACGGCTTGCGCA
147263 TCCCGTCTCTCCGGAT
325 TCCCGTCTCTCCGGAT
*
147279 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTCTTTGT
1 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTAAATTTCTTTGT
* * * *
147344 GCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
66 ACATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCATCCGAAAAAA
*
147409 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTG
131 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAGAACGAGTCGTCTTG
147474 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
196 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
* *
147539 GCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
261 GCACGTAGAAATATGAAGATGTGCCAAAACCCACCAAACACCCTATCGATCCACGGCTTGCGCAT
147604 CCCGTCTCT
326 CCCGTCTCT
147613 TTGGACGGCG
Statistics
Matches: 322, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
340 320 0.99
341 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (340 bp):
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTAAATTTCTTTGT
ACATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCATCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTAAAAAATAGAGAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAATTTACAAGCCATAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCAAAACCCACCAAACACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCCGGAT
Found at i:147854 original size:26 final size:26
Alignment explanation
Indices: 147825--147903 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
147815 GTTAACTTAG
*
147825 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
147851 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
147877 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
147903 G
1 G
147904 ATCGGACCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:150502 original size:26 final size:26
Alignment explanation
Indices: 150473--150525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
150463 GTTGACTTAG
*
150473 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
150499 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
150525 G
1 G
150526 ATAGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:151068 original size:845 final size:852
Alignment explanation
Indices: 147851--155503 Score: 7563
Period size: 845 Copynumber: 8.8 Consensus size: 852
147841 CCCAGTCTAA
* * * *
147851 GCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCAGAC
* * *
147916 CCAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTG-CTGCATTTTTCTTTGTCGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTCGGG
* ** * * * * *
147980 GCACCATCGTCGTAGCATCGTTGGAGAACTTTACCGGCGGCATTGGGGTTTCGGCAATCGGGGGG
129 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
148045 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
194 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
148109 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
148174 GTCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
148239 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAGCAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
148304 TTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAAT
454 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
148369 CGTGAAAAATAGAGAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
519 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
148433 ATGAATTTACAAGCCATAAAAAT-GAAGTTGGCATGCAGAAATATAAAGATGTGCCTAAACCCAC
584 ATGAATTTACAAGCCATAAAAATGGCA-TTGGCATGTAGAAATATGAAGATGTGCCTAAA--CAC
*
148497 CTACCACCGTATCGATCCACGCCTTGCGCATCCCGTCTCTCTGGCTGACGTAATGCCTGCCTGCC
646 CTACCACCCTATCG----A-------C-CA---CG---C-C---C-G-C----T--C-G--T---
* * **
148562 AACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA
675 ----------CTC---TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGA
* ** * * * * * *
148627 CCAGACCGAGGGTTGCAACAGTAGGATCGACAGCACACAGAGAGGGACCCGGTCGATCCCCGGCT
727 CCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCT
* * * * * * *
148692 TGCGCATCCCGCCCGTCTGGCCGGTTAAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAG
792 TACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
*
148753 GCATACGGAGTTCATTCCCAGTCT----AT-----G---------A-TC---G---GATCGGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGATCAGACC
* * * * * * *
148793 AAGGGTTACGGCAGCAAACGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTGGGGGC
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
* * * * *
148858 ACCATTG-CTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGAGGGGG
131 ACCATCGTC-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
148922 CC-GGGGGGTGTACGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
195 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
148986 TCCCTCATCAATCCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
149051 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAGATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
149116 TTTGAGGTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAACAATACAAGGATCATGTCTACCAAT
390 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAG
* * **
149180 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCG-CAAAA-TTTTGAAAAT
454 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
149243 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
519 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
149308 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
584 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA--CACC
*
149373 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGTGTACTGCCCGCCCACCC
647 TACCACCCTATCGA-CCAC-GC--CCGC-T--CG--TCTCT---C---G---T------------
* * *
149438 ACCCGCCCACTCATTTCGTCTCTTGGCTTAGGCATACGGAGTTCATTCTCAATCTAAGATCAGAC
682 ---CG------------G----TTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGAC
* * * * * * **
149503 CAGACTGAGGGTTACGGCAACAGGATTGGTAGCACGCAGAGGGGGACCCGGTCGATCCTTGGCTT
728 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTT
* * * *
149568 ACGCATCCCGCCCCTATGGTCGGCTGAGCGCCCGCATGCTCGCTTCGTGGGTTGACTTAG
793 ACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * * * *
149628 GCATATGAAATTCATTCCCACTCTAAGCATACAGAGTTCATTCCCAGTTTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCAGAC
* ** * **
149693 CGATGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGCCAAGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
* * * * * *
149758 CACCATTGTCGTACCATCGCCGGAGAACCTAATCGGCGGCATTGGGGATTCGGA-GATCGGGGGG
130 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG-TTCCGACGATCGGGGGG
*
149822 GCCGGGGGGCGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
194 GCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* **
149887 TATCTCTCATCAAACCTCGAGAACTCACACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGC
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
149952 TGCCAGTAGCCATTAAACTGTCTGAAATGGGGACGCTTTATTCAAATGGTCACAAAATCTTGTAC
323 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
150017 ACCTCGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAAGACAAGGATCACGTCTACCAA
388 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
150082 GTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAA
453 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
150147 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
518 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * * * *
150212 CATGAATTTAGATGCCATAAAAATGGCATTGGCATGTAGAAAAATCAATATCTGCCT-AA-ACC-
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACACCT
* * *
150274 AGC-CCGT-CCG-CC-CGCCCGCTCGT-T-TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
648 ACCACCCTATCGACCACGCCCGCTCGTCTCTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* *** * * * * ** **
150333 AGTTTAAGATCGGATTGGACTGAGGGTTGTGGCAGTAGGATCGGCAGCATGTAGAGGCAGACCCA
713 AGTTTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTG
* * * ** *
150398 GTCGATCCCCGACTTGCGCATCCTACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCATGG
778 GCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGG
150463 GTTGACTTAG
843 GTTGACTTAG
*
150473 GCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATA-GATCAGAC
* * * *
150538 CGAGGGTTACGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
* ** * * * *
150603 CACCATCGTCGAAGCATCGTTGGGGAACTTGACAGGCGGCATTGGGGTTCCGACGATCGGTGGGG
130 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
150668 CCGGGGGGCGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
195 CCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
150733 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
150798 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTATTCAAATGGTCACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
150863 CTTCAAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAAGACAAGGATCACGTCTACCAA
389 CTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
150927 GTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAA
453 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
150992 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
518 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * *
151057 TATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTAGAAATATCAATATCTGCCT-AA-ACC-
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACACCT
* * * * * *
151119 AGC-CCGT-TCG-CC-CGCCCGTTCAT-T-TCGTCGGTTGCCTTAGGCATATGGAGTTCATTCCC
648 ACCACCCTATCGACCACGCCCGCTCGTCTCTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * ** *
151178 AGTTTAAGATCGGACCAGACTGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGCAGACCTA
713 AGTTTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTG
* * * * *
151243 GCCGATCCCCGGCTTACGTATCCTGTCCCACTGGTCGGCTGAGCGCCTGCACGCTCGTTTCATGG
778 GCCGATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGG
151308 GTTGACTTAG
843 GTTGACTTAG
151318 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC------AGATCAGACC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGATCAGACC
* * *
151358 GAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGTCGCAATTTTCTTCGTCGGGGC
66 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
** *
151423 ACCATCCCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
131 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
*
151488 C-GGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTA-------C-----TTGG--CCCTAT
196 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
151538 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
261 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
151603 CAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACT
326 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
151668 TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACATAAAA-ACAAGGATAATGTCTACCAAGT
391 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGT
* * ** *
151732 TT-GTGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACAATAAAAAGTTTAAAAAATC
455 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
151796 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
520 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * **
151861 TGAATTTACAAGCCATAAAAATGGTATTCGCATGCAGAAATATGACGATGCACCTAAACCCACCT
585 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA--CACCT
151926 ACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGTCGGCATAGTACCCGCCCGCCCG
648 ACCACCCTATCGA-CCA-------CGC--C-CG---CTC--GT---C----T-------------
* * *
151991 CCGCCCGCTCATTTTGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTCAA-ATC-GAAC
677 -------CTC-----GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG-TTTAAGATCAG-AC
* * * ** * *
152054 CAGACCGAGGGTTGTGGCAGCAAGATCAACAGCACACAGAGGGGGACCTGGCCGATCCCTGGCCT
728 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGG-CT
* * * * * * *
152119 T-CGCGTCCCACCCCTCTGGTCGGTTGAGTGCCCGCACACTCGTTTCGTAGGTTGACTTAG
792 TACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
** * *
152179 GCATACGGAGTTCATTCTAAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATTGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA-TAGATCAGAC
* * * * *
152244 CGAGGGTTGCGGTAGCACTTGCAGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
* * * * * * *
152309 CACCATCGTCGGAGCATCACCGAAGAACCTAACCTGCGACATTGGTGTTCCGGCGATC--GGGGG
130 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * * * * * **
152372 TCGGGGGGGTGTGCGAACATGATGTGTGATGGGTGCTGATACTTGGCCCATATAATATCCCCCTA
195 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
152437 TCCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAGAGCATTTGAGATTTTACA-G---GCAG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
152498 CTAGTAGCCATTAAAGTGTCTAAAATGGGGACAATTTTTTAAAATGGTCACAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
152563 TTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAATAATACAAGGATCACGCCTACCAAGT
390 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
**
152628 TTTTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
455 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
152693 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTA
520 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
152758 TGAATTTACAAGCCA-AAAAATGGCATTGGCACT-TAGAAATATGAAGATGTGCCTAAACGCACC
585 TGAATTTACAAGCCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAA--CACC
152821 TACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCC
647 TACCACCCTATCGA-CCA---C--G-----CCCG-----CT------C---GT-------C-T--
* *
152886 GCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT-----CAGACTGA
677 -CTCG-----TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGACCAGACTGA
* * **
152946 -GGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCC
736 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCTTACGCATCC
* *
153010 CACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
801 CGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* *
153062 GCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCAGAC
* *
153126 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
* * * *
153191 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTC-AGCGATCGGAGGG
130 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGG
** * *
153255 GCCTAGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATACTGGCCCCCT
194 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
153320 ATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
259 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
153385 GCCAGTAGCCATTAAAGTGTCTGGAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
324 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
153450 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
389 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* ** * * * *
153515 GTTGGGGTGAAAACTCCTTCTGAAAAAATTTTAAAAAATCCAGAACCATAATAAGTTTCAAAAAT
454 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
153580 CATGAAAAATAGAAAATGAGTCGTCTTCCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGT
519 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * * *
153645 ATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACT
584 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA--CACC
153710 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCC
647 TACCACCCTATCG----AC--C--ACG---CCCG-----CT---C------GT------------
** *
153775 GCCAGCTTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATCAGA-
675 -----C-T-CTCG--TCG--G-TTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAGAC
* ** ** * * * * *
153839 CTGAACCAAGGGTTGCGGCAGCAGGATCAACAGCATGCAGAAGGGGACCCGACCGATCTCCGGCT
728 CAG-ACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCCCCGGCT
* * * * * * * *
153904 TACGCATCCTGCCCCTCTGGCCGACTGAGCACTCGCACGTTCGTTTCATGGGTTGACATGG
792 TACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * * *
153965 GCATACGGAGTTCATTCCCGGTCTAAGAATACGGAGTTCTTTCCCAGTCCAAGATCGA--AGCCT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGATCAGAC-
* * * * * ** *
154028 CAAGTGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGCTGTCGCATTTTTCTTCACCGAGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
* * * * * * * ** ** *
154093 CACCAACATCGGAGCATCGCTGAAGAACCTGACAGGCAGCATTAGGGTTTAGGTGATCGTGGGGG
130 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
154158 CCGGAGGGGGTGTGC-AACCATGATGTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCC
195 CCGG-GGGGGTGTGCGCA-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
154222 TATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAATGAGCATTTGAGATTTTATAGGTTTCC
258 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
154287 TGCCAATAGCCATTGAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
323 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
154352 ACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
388 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * *
154417 GTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAGAAATCCCAAACCGCAAAGAGTTTCAAAAA
453 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * * *
154482 TCATGAAAAATATAGAACTAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAGGCACCATTG
518 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
154547 TATGAATTTACAAGCCAT-AAAATGGCATTGGCACT-TAGATATATGAAGGTGTGCCTAAAAGCA
583 TATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCT-AAA-CA
154610 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTACTCGC
645 CCTACCACCCTATCGA-CCA-------CG---CCCG-----CT------C-----G-----T---
* *
154675 CCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATC-G
675 -C-T-------CTCG-----TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCAG
* * *
154739 ----GATTGA-GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATCTCCAGG
726 ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCCGATC-CCCGG
** * * * *
154799 -TTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAGGCTCGTTTCATGTGTTGACTTAG
790 CTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
154861 GCATAC-GAGTTCATTCCCAGTCTAAGCATACGAACTTCATTCGCAGTCTAAGATCAGATCGGTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCAGAC
* * * *
154925 TGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGG
65 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
** * ** * * * *
154990 CACCATCACCGGAGCATCACCAAAGAACTTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGG
130 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
155055 CCTGGGGGGTGTGCGCACATGATGTGCGATGGATTCTAGTACTTGGCCCTTATATTGGCCCCCTA
195 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
155120 TCCCTCACCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
260 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
155185 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATGGTCAGAAAATCTTGTACAC
325 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
155250 TTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
390 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** **
155315 TTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAACGTC
455 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
155380 GTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
520 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
155445 TGAATTTACAACCCATAAAAATGGCAATGGCACGTAGAAATATGAAGATGTGCCTAAAC
585 TGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
155504 CCAACTACGA
Statistics
Matches: 5763, Mismatches: 691, Indels: 601
0.82 0.10 0.09
Matches are distributed among these distances:
802 169 0.03
803 184 0.03
804 4 0.00
805 4 0.00
806 3 0.00
807 2 0.00
808 3 0.00
809 3 0.00
810 1 0.00
811 2 0.00
817 32 0.01
818 5 0.00
819 128 0.02
820 1 0.00
821 1 0.00
822 2 0.00
825 2 0.00
826 2 0.00
827 2 0.00
835 2 0.00
836 2 0.00
838 4 0.00
839 2 0.00
840 1 0.00
841 1 0.00
843 1 0.00
844 7 0.00
845 928 0.16
846 4 0.00
849 1 0.00
851 3 0.00
852 4 0.00
855 1 0.00
856 3 0.00
857 1 0.00
859 3 0.00
860 2 0.00
861 157 0.03
862 7 0.00
863 1 0.00
864 2 0.00
865 1 0.00
866 1 0.00
867 2 0.00
870 2 0.00
871 2 0.00
874 27 0.00
875 284 0.05
876 398 0.07
877 1 0.00
879 4 0.00
880 2 0.00
881 1 0.00
882 163 0.03
883 104 0.02
884 122 0.02
885 8 0.00
886 38 0.01
887 116 0.02
888 257 0.04
889 115 0.02
891 2 0.00
892 6 0.00
893 5 0.00
894 8 0.00
895 47 0.01
896 649 0.11
897 327 0.06
898 14 0.00
899 10 0.00
900 61 0.01
901 118 0.02
902 249 0.04
903 743 0.13
904 57 0.01
905 128 0.02
906 2 0.00
909 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (852 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGATCAGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGC
ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACACCTACC
ACCCTATCGACCACGCCCGCTCGTCTCTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
TTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCTGGCC
GATCCCCGGCTTACGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAG
Found at i:151805 original size:26 final size:26
Alignment explanation
Indices: 151753--151810 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
151743 CTCCTTCCGA
* *
151753 AAAAATTTTAAAAAATCTCGAACAAT
1 AAAAAGTTTAAAAAATCTCGAAAAAT
151779 AAAAAGTTTAAAAAATCAT-GAAAAAT
1 AAAAAGTTTAAAAAATC-TCGAAAAAT
151805 AGAAAA
1 A-AAAA
151811 CGAGTCGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.22
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAT
Found at i:152231 original size:26 final size:26
Alignment explanation
Indices: 152179--152231 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
152169 GTTGACTTAG
*
152179 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
152205 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
152231 G
1 G
152232 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:153091 original size:25 final size:26
Alignment explanation
Indices: 153062--153113 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
153052 GTTGACTTAG
153062 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
153087 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
153113 G
1 G
153114 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:153997 original size:26 final size:26
Alignment explanation
Indices: 153967--154018 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
153957 TGACATGGGC
* *
153967 ATACGGAGTTCATTCCCGGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCCAAGA
*
153993 ATACGGAGTTCTTTCCCAGTCCAAGA
1 ATACGGAGTTCATTCCCAGTCCAAGA
154019 TCGAAGCCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCCAAGA
Found at i:154890 original size:25 final size:26
Alignment explanation
Indices: 154861--154912 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
154851 GTTGACTTAG
*
154861 GCATACG-AGTTCATTCCCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
*
154886 GCATACGAACTTCATTCGCAGTCTAA
1 GCATACGAACTTCATTCCCAGTCTAA
154912 G
1 G
154913 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTAA
Found at i:155222 original size:896 final size:897
Alignment explanation
Indices: 151318--155630 Score: 5727
Period size: 896 Copynumber: 4.8 Consensus size: 897
151308 GTTGACTTAG
* *
151318 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
151383 CTCGGGCATGTGCTGGTGTCGCAATTTTCTTCGTCGGGGCACCATCCCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAGA
*
151448 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
151512 GGAT-GG-G-TG--C-TGG----TA-CTTGG--CCCTATCCCTCATCAAACCTTGAGAACTCACA
196 CGATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
151564 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
151629 GGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
151694 GCATGCCAACATAAAA-ACAAGGATAATGTCTACCAAGTTT-GTGCCAAAACTCCTTCCGAAAAA
391 GCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
151757 ATTTTAAAAAATCTCGAACAATAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
151822 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
151887 TTCGCA-TGCAGAAATATGACGATGCACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 TTGGCACT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * ** *
151951 GCATCTCGTCTCTCTAGTCGGCATAGTACCCGCCCGCCCG-CCGCCCGCTCATTTTGTCAGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTAATCGGTTGG
* * * * *
152015 CTTAGGCATACGGAGTTCATTCCCAGACTCAAATCGAACCAGACCGAGGGTTGTGGCAGCAAGAT
714 CTTAGGCATACGGAGTTCATTCCCAG--TCTAA--G-ATCAGACTGAGGGTTGCGGCAGCAGGAT
* * * **
152080 CAACAGCACACAGAGGGGGACCTGGCCGATCCCTGGCCTT-CGCGTCCCACCCCTCTGGTCGGTT
774 CAACAGCACGCAGAGGGGGACCTGGCCGATCCC-GG-CTTGCGCATCCCACCCCTCTGGCCGACT
* * * * **
152144 GAGTGCCCGCACACTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCTAAGTCTAA
837 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
152205 GCATACGGAGTTCATTCCCAGTGTAAGATTGGATCAGACCGAGGGTTGCGGTAGCACTTGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
152270 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAGA
* * * * * * *
152335 ACCTAACCTG-CGACATTGGTGTTCCGGCGATC--GGGGGTCGGGGGGGTGTGCGAACATGATGT
131 ACCTGACC-GACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * **
152397 GTGATGGGTGCTGATACTTGGCCCATATAATATCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
152462 CACGCCCTTAAAGAGCATTTGAGATTTTACA-G---GCAGCTAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
152523 TGGGGACAATTTTTTAAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
152588 GTGCATGCCAACAATAATACAAGGATCACGCCTACCAAGTTTTTGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
152653 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
152718 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCA-AAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
152782 ATTGGCACTTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
152847 ACATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCCGT----CCGCTCGTTTAATCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTAATCGGTTGG
* * **
152904 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGA-GGTTGCGGTAGCAGGATCGGCA
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGGGTTGCGGCAGCAGGATCAACA
* * *
152968 GCACGTAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCGC
779 GCACGCAGAGGGGGACCTGGCCGAT-CCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGC
153033 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
843 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
153087 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
153152 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAGA
* **
153217 ACCTGACCGACGGCATTGGGGTTTC-AGCGATCGGAGGGGCCTAGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTTCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
153281 GCGATGGGTTCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
153346 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
153411 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
153476 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGGTTGGGGTGAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
153541 AATTTTAAAAAATCCAGAACCATAATAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
153606 TCCCATGAGACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
153671 ATTGGCA-TGCAGAAATATGAAGATGTGGCTAAACCCACTTACCACCCTATCGATCCACGGCTTA
584 ATTGGCACT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** ** *
153735 CGCATCCCGTCTCTCTGGCCAGTGTAGTGCCCGCCCGCCCG-CCAGCTTGCTCGTTTCGTCGATT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCC-GCCCGCTCGTTTAATCGGTT
**
153799 GGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGATCAGACTGAACCAAGGGTTGCGGCAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG-----AGGGTTGCGGCAGCAGG
* * * * * **
153864 ATCAACAGCATGCAGAAGGGGACCCGACCGATCTCCGGCTTACGCATCCTGCCCCTCTGGCCGAC
772 ATCAACAGCACGCAGAGGGGGACCTGGCCGATC-CCGGCTTGCGCATCCCACCCCTCTGGCCGAC
* * * * * *
153929 TGAGCACTCGCACGTTCGTTTCATGGGTTGACATGGGCATACGGAGTTCATTCCCGGTCTAA
836 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
153991 GAATACGGAGTTCTTTCCCAGTCCAAGATC-GA--AGCCTCAAGTGTTACGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC-CGAGGGTTGCGGCAGCACATGCTGG
* * ** * * * *
154053 GCTCGGGCATGTGCTGCTGTCGCATTTTTCTTCACCGAGGCACCAACATCGGAGCATCGCTGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAG
* * * * * ** * *
154118 AACCTGACAGGCAGCATTAGGGTTTAGGTGATCGTGGGGGCCGGAGGGGGTGTGC-AACCATGAT
130 AACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCA-CATGAT
*
154182 GTGCGATGGGTGCTGGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * * *
154247 CACACCGCCTTAATGAGCATTTGAGATTTTATAGGTTTCCTGCCAATAGCCATTGAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
154312 AATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
154377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * * *
154442 AAAATTTTAAGAAATCCCAAACCGCAAAGAGTTTCAAAAATCATGAAAAATATAGAACTAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
154507 CTTGCCATGAAATTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCAT-AAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * ** *
154571 GCATTGGCACTTAGATATATGAAGGTGTGCCTAAAAGCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * *
154636 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTACTCGCCCGTCCGCCCGCTCGTTTCATCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTAATCGGTT
* * * * **
154701 GGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGGATTGA-GGTTGCGGTAGCAGGATCGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGGGTTGCGGCAGCAGGATCAA
* *
154765 CAGCACGCAGAGGGGGACCTGGCCGATCTCCAGG-TTGTGCATCCCGCCCCTCTGGCCGACTGAG
777 CAGCACGCAGAGGGGGACCTGGCCGATC-CC-GGCTTGCGCATCCCACCCCTCTGGCCGACTGAG
* *
154829 CGCCCGCAGGCTCGTTTCATGTGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
840 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
154886 GCATACGAACTTCATTCGCAGTCTAAGATCAGATCGGTCTGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
154951 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCACCAAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAGA
* * *
155016 ACTTGATCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
155081 CGATGGATTCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCAC
196 CGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
155146 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
155211 GGGGACACTTTTTCCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
155276 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** ** *
155341 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAACGTCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
155406 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
155471 ATGGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACGACCATATCGATCCACGGCTTGTG
585 TTGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
155536 -ATCCCGTTTCTCTGGCCAGCTTAGTGCCCGCCCACCCGTCCGCTCGCTCATTTAATCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTAATCGGTTGGC
155600 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAG
155631 CATACGGAGT
Statistics
Matches: 2985, Mismatches: 379, Indels: 115
0.86 0.11 0.03
Matches are distributed among these distances:
881 1 0.00
882 163 0.05
883 99 0.03
884 122 0.04
885 9 0.00
886 25 0.01
887 149 0.05
888 257 0.09
889 133 0.04
892 10 0.00
893 12 0.00
895 45 0.02
896 754 0.25
897 367 0.12
898 3 0.00
899 1 0.00
900 59 0.02
901 2 0.00
902 260 0.09
903 469 0.16
904 45 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGAAGA
ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTAATCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGGGTTGCGGCAGCAGGATCAACAGC
ACGCAGAGGGGGACCTGGCCGATCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:155640 original size:26 final size:26
Alignment explanation
Indices: 155604--155656 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
155594 GTTGGCTTAG
155604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
155630 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
155656 G
1 G
155657 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:156292 original size:741 final size:744
Alignment explanation
Indices: 154851--156371 Score: 2252
Period size: 741 Copynumber: 2.0 Consensus size: 744
154841 CGTTTCATGT
* *
154851 GTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGAACTTCATTCGCAGTCTAAGAT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGAT
* * * * * * *
154915 CAGATCGGTCTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
66 CAGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATATGCTGGTGCCGCATTTTTC
* * * * *
154980 TTTGTCGGGGCACCATCACCGGAGCATCACCAAAGAACTTGATCGACGGCATTGGGGTTTCGACG
131 TTTGCCGGGGCACCATCAACGGAGCATCACCAAAGAACCTGACCAACGGCATTGGGGTTTCGACG
* * *
155045 ATCGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGATTCTAGTACTTGGCCCTTATAT
196 ATCGGGGGCGCCTGGGGGGTGCGCGCACATGATGTGCGATGGATGCTAGTACTTGGCCCTTATAT
155110 TGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTAC
261 TGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTAC
* *
155175 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATGGTCAGAAAA
326 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATGGACACAAAA
* *
155240 TCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
391 TCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCAAAAAAAACACAAGGATCACG
* * **
155305 TCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
456 TCTACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTAAAAAAATCCCGAACCACAAAAAGT
**
155370 TTTGAACGTCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGG
521 TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGG
* *
155435 GACCATTGTATGAATTTACAACCCATAAAAATGGCAATGGCACGTAGAAATATGAAGATGTGCCT
586 GACCATTGTATGAATTTACAACCCATAAAAATGGCAATGGCACGCAGAAATATGAAGATCTGCCT
* * * * *
155500 AAACCCAACTACGACCATATCGATCCACGGCTTGTGATCCCGTTTCTCTGGCCAGCTTAGTGCCC
651 AAACCCAACTACCACCATATCGATCCACGGCTTGCGATCCCATCTCTCTGGCCAGCGTAGTGCCC
*
155565 GCCCACCCG-TCCGCTCGCTCATTTAATCG
716 GCCCACCAGCTCCGC-CGCTCATTTAATCG
* * *
155594 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGAT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGAT
155659 CAGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATATGCTGGTGCCGCATTTTT-
66 CAGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATATGCTGGTGCCGCATTTTTC
**
155723 TTTCGCCGGGGCACCATCAACGGAGCATCACCGGAGAACCTGACCAACGGCATTGGGGTTTCGAC
131 TTT-GCCGGGGCACCATCAACGGAGCATCACCAAAGAACCTGACCAACGGCATTGGGGTTTCGAC
*
155788 GATC-GGGGCGCC-GGGGGGTGCGCGCACATGATGTGCGATGGGTGCT-GATACTTGGCCCTTAT
195 GATCGGGGGCGCCTGGGGGGTGCGCGCACATGATGTGCGATGGATGCTAG-TACTTGGCCCTTAT
* * * *
155850 ATTGG-CCCCTATCCCTTATCAAACCTCGAGAACTCACAC-CGGCTTAAAGAGCATTTGAGATTT
259 ATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACTC-CCTTAAAGAGCATTTGAGATTT
* * * * *
155913 TACAGGTTTGCTGCTAGTAGCCATTGAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGACACA
323 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATGGACACA
* * *
155978 AAATCTTGTACACTTTGAGTTTTTAGCTGAAT-TGTTTTATGCATGCCAACAAAAACACAAGGAT
388 AAATCTTGTACACTTCGAGTTTTTAGCTAAATGT-TTTTATGCATGCCAAAAAAAACACAAGGAT
* * * * *
156042 CACGTCTGCCAGGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCTCGAACCACAAA
452 CACGTCTACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTAAAAAAATCCCGAACCACAAA
* * *
156107 AAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTT
517 AAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTT
* * *
156172 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGCACGCAGAAATATGAAGGTCT
582 AAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCAATGGCACGCAGAAATATGAAGATCT
* * *
156236 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAG
647 GCCTAAACCCAACTACCACCATATCGATCCACGGCTTGCG-ATCCCATCTCTCTGGCCAGCGTAG
* * * ** *
156301 TGCCCGCCCGCTAGCTCGGCCGCTTGTTTTATCG
711 TGCCCGCCCACCAGCTCCGCCGCTCATTTAATCG
*
156335 GTTGGCCTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
156372 ATCAGACCAG
Statistics
Matches: 697, Mismatches: 74, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
740 59 0.08
741 400 0.57
742 54 0.08
743 25 0.04
744 159 0.23
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (744 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATATGCTGGTGCCGCATTTTTC
TTTGCCGGGGCACCATCAACGGAGCATCACCAAAGAACCTGACCAACGGCATTGGGGTTTCGACG
ATCGGGGGCGCCTGGGGGGTGCGCGCACATGATGTGCGATGGATGCTAGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATGGACACAAAA
TCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTATGCATGCCAAAAAAAACACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTACTTCCAAAAAAATTTAAAAAAATCCCGAACCACAAAAAGT
TTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAACCCATAAAAATGGCAATGGCACGCAGAAATATGAAGATCTGCCT
AAACCCAACTACCACCATATCGATCCACGGCTTGCGATCCCATCTCTCTGGCCAGCGTAGTGCCC
GCCCACCAGCTCCGCCGCTCATTTAATCG
Found at i:157429 original size:25 final size:26
Alignment explanation
Indices: 157400--157451 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
157390 GTTGACTTAG
*
157400 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
157425 GCATACGGACTTCATTCGCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
157451 G
1 G
157452 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:157732 original size:895 final size:895
Alignment explanation
Indices: 155575--157803 Score: 3159
Period size: 895 Copynumber: 2.5 Consensus size: 895
155565 GCCCACCCGT
* * * * *
155575 CCGCTCGCTCATTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
1 CCGCACGCTCGTTTCATTGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * * * *
155640 TTCATTCCCAGTTTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTAGGCTCGAGCATA
65 TTCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
155705 TGCTGGTGCCGCATTTTTTTTCGCCGGGGCACCATCAACGGAGCATCACCGGAGAACCTGACCAA
130 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGATCGA
* * *
155770 CGGCATTGGGGTTTCGACGA-TCGGGGCGCCGGGGGGTGCGCGCACATGATGTGCGATGGGTGCT
195 CGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
155834 GATACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAACCTCGAGAACTCACACCGGCTTAAA
260 G-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAA
* * *
155898 GAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTGAAGTGTCTGAAATGGGGACATTTT
323 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
155963 TTTCAAATGGACACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAC
388 TTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAA
* * *
156028 AAAAACACAAGGATCACGTCTGCCAGGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAA
453 AAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTAAAAAAA
* * *
156093 TCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACT
518 TCTCGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
*
156158 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACGCAGA
583 TCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACGCAGA
* *
156223 AATATGAAGGTCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCT
648 AATATGAAGGTCTGCCTAAAACCACCTACCACCATATCGATCCACGGCTTGCGCATCCCATCTCT
* * * *
156288 CTGGCCGGCGTAGTGCCCGCCCGCTAGCTCGGCCGCTTGTTTTATCGGTTGGCCTAGGCATACGG
713 CTGGCCGGCGTAGTGCCCGCCCGCCAGCCCGGCCGCTCGTTTCATCGGTTGGCCTAGGCATACGG
* *
156353 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCAGCAGCACGTAG
778 AGTTCATTCCCAATCTAAGATCAG---AGACCGAGGGTTGCGGCAGCAGGATCAGCAG-ACGCAG
* * *
156418 AGGGTGACCCGACCGATCCTCGGCTTGCGCATCTCGCCCCTCTGGCCGACTGAGCGC
839 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* * * * * * *
156475 CCGCACGTTCGTTTCGTTGGGTGACTTAGGCATATGGAGTTCATTCCCAGTGTAAGTATGCGGAG
1 CCGCACGCTCGTTTCATTGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
156540 TTCATTCCCAGTCCAAGATCAGATCGGTCTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATG
65 TTCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
156605 TGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCACAGGAGCATCGCCGGAGAACCTGATCGA
130 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGATCGA
* *** * * *
156670 CGGCATTAGGGTTTCGGTAATCGGGGGGGTCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCT
195 CGGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
156735 GGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAGACCTCGAGAACTTACACCCCCTTTAA
260 -GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC-TTAA
*
156800 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTT
322 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
156865 TTTTCAAATGGTCAAAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCTAA
387 TTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAA
* * * *
156930 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAGAA
452 AAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTAAAAAA
** *
156995 ATC-CTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAGAACT-AGTCGTCTTGCCATGAA
517 ATCTC-GAACCACAAAAAGTTTTAAAAATCATGAAAAATAGA-AAATGAGTCGTCTTGCCATGAA
* * *
157058 ATTTCACGTGAAGGCCTTAAGGCACCGTTGTATGAATTTGCAAGCCAT-AAAATGGCATTGGCAC
580 ACTTCACGTGAAGG-CTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCAC
** * * *
157122 TTAGAAATATGAAGGTGTGCCTAAAAGCACCTACCACCATATCGATCCACGGCTTGCGCATCCCG
643 GCAGAAATATGAAGGTCTGCCTAAAACCACCTACCACCATATCGATCCACGGCTTGCGCATCCCA
* * *
157187 TCTCTCTGGCCGGCGTAGTG-CCGACTCGCCCGCCCGGCCGCTCGTTTCATCGGTTGGCTTAGGC
708 TCTCTCTGGCCGGCGTAGTGCCCG-CCCGCCAGCCCGGCCGCTCGTTTCATCGGTTGGCCTAGGC
* * * * *
157251 ATACGGAGTTTATTCCCAATCTAAGATC-G-GACTGA-GGTTGCGGTAGCAGGATCGGTAG-CGC
772 ATACGGAGTTCATTCCCAATCTAAGATCAGAGACCGAGGGTTGCGGCAGCAGGATCAGCAGACGC
* * * * *
157312 AGAGGGGGACCTGGCCGATCCCCAGG-TTGTGCATCCCGCCCCTTTGGCCGACTGAGTGC
837 AGAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* *
157371 CCGCAGGCTCGTTTCA-TGTGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAC
1 CCGCACGCTCGTTTCATTG-GTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAG
*
157435 TTCATTCGCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
65 TTCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
*
157500 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGATCGA
130 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGATCGA
* *
157565 CGGCATTGGGGTTTCGACGATTGGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGATTC
195 CGGCATTGGGGTTTCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
157630 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACTCCCTTAA
259 T-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAA
*
157695 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
322 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
157760 TTTCCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCT
387 TTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCT
157804 AAATGTGGGA
Statistics
Matches: 1173, Mismatches: 141, Indels: 35
0.87 0.10 0.03
Matches are distributed among these distances:
895 283 0.24
896 161 0.14
897 2 0.00
898 20 0.02
899 5 0.00
900 178 0.15
901 56 0.05
902 33 0.03
903 261 0.22
904 174 0.15
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
CCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGTCTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGATCGAC
GGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAA
AACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTAAAAAAATCT
CGAACCACAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCACGCAGAAAT
ATGAAGGTCTGCCTAAAACCACCTACCACCATATCGATCCACGGCTTGCGCATCCCATCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCAGCCCGGCCGCTCGTTTCATCGGTTGGCCTAGGCATACGGAGT
TCATTCCCAATCTAAGATCAGAGACCGAGGGTTGCGGCAGCAGGATCAGCAGACGCAGAGGGGGA
CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
Found at i:157958 original size:177 final size:177
Alignment explanation
Indices: 157657--157976 Score: 532
Period size: 177 Copynumber: 1.8 Consensus size: 177
157647 ATTGGCCCCC
* * ***
157657 TATCCCTCGTCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAAAGTACAGGTTTGC
*
157722 TGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATGGTCAAAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTAAAAGGGGGACACTTTTTCCAAATGGTCAAAAAATCTTGTAC
157787 ACTTCGAGTTTTTAGCTAAATGTGGGATGGGTGCTGGTACTTGGCCT
131 ACTTCGAGTTTTTAGCTAAATGTGGGATGGGTGCTGGTACTTGGCCT
*
157834 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAAAGTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAAAGTACAGGTTTGC
* * * * *
157899 TGCCAGTAGCCATTAAAGTGTTTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGC
66 TGCCAGTAGCCATTAAAGTGTCTAAAAGGGGGACACTTTTTCCAAATGGTCAAAAAATCTTGTAC
157964 ACTTCGAGTTTTT
131 ACTTCGAGTTTTT
157977 GGCTGAATTT
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
177 131 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (177 bp):
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAAAGTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTAAAAGGGGGACACTTTTTCCAAATGGTCAAAAAATCTTGTAC
ACTTCGAGTTTTTAGCTAAATGTGGGATGGGTGCTGGTACTTGGCCT
Found at i:158516 original size:26 final size:26
Alignment explanation
Indices: 158480--158532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
158470 GTTGACTTAG
158480 GCATACGGAGTTCACTCCCAGCCTAA
1 GCATACGGAGTTCACTCCCAGCCTAA
* *
158506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGCCTAA
158532 G
1 G
158533 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGCCTAA
Found at i:160293 original size:26 final size:26
Alignment explanation
Indices: 160263--160314 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
160253 GTTGACTTAC
160263 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
160289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
160315 CATCCGACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:160687 original size:903 final size:902
Alignment explanation
Indices: 157834--161672 Score: 5137
Period size: 904 Copynumber: 4.3 Consensus size: 902
157824 TACTTGGCCT
* ***
157834 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAAAGTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
157899 TGCCAGTAGCCATTAAAGTGTTTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
157964 ACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGTCAAAAAAAATACAAGGATCATGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA
* *
158029 GTTTGAGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA
*
158094 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
158159 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
158224 CTACCACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGAG-CGGCGTAGTGCCCGCCTGC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG-GCCAGCGTAGTGCCCACCCGC
** * * * * * *
158288 CCGCCTTCCTGCACGTTTCATCGGTTGGGTTAGGCATATGAAGTTCATTCCCAGTCTAAGATTGG
455 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA-TCG
* * * * * *
158353 ACCAAATTGAGGGTTGCAGCAGTAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCCC-GA
519 ACCAAACTGAGGGTTACGGCAGCAGGATCGGCAGCACATAGAAGGGGACCCGGTCGATCCCCGGA
* * * **
158417 CTTGCGCATCCCGCCCGTCTAGCCGGCTGAGCGCTTGCACGCTCGTTTCGTGGGTTGACTTAGGC
584 -TTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
158482 ATACGGAGTTCACTCCCAGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCG
648 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
* ** * ** *
158547 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCTCATTTTTCTTCACCGGGGC
713 AGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCCT-ATTTTTCTTCGTCGGAGC
158611 ACCA---TC---G---C--CGGAGAACCTGACCGG-CGGCATTGGGGTTCCGACGATCGGGGGGG
777 ACCATCGTCGGAGCATCATCGGAGAACCTGACCGGAC-GCATTGGGGTTCCGACGATC-GGGGGG
* *
158664 CCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
840 CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
158727 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGT
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
158792 TACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * ** * *
158857 ACTTCAAGTTTTTTGCTGAATTTTTTTTTGCATGGTAACAAAAATACAAGGATCGTGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA
* * * ** *
158922 GTTTGAGGCCAAAACTCTTTCCCAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTTGAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA
* * *
158987 TCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAAC-TCACGTGAAGGCTTAAGGGACAATTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * **** **
159051 TAGGAATTTACAAGCAAGACCGGTGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
159116 CTACCACCCTATCGATCCACGGCTTGCCCATCCCGTCACTCT-GCCCGATGTAGTGCCCA-----
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAG-CGTAGTGCCCACCCGC
* * * *
159175 ---CCCGTCCGCTCGTTTCCTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
455 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGA
** ** * * * *
159237 CCAAACTGAGGGTTGTGGCAGCAGGATCGATAGCACATAGAGGGGGACCCGGTCGAACCTCGGCT
520 CCAAACTGAGGGTTACGGCAGCAGGATCGGCAGCACATAGAAGGGGACCCGGTCGATCCCCGGAT
* * *
159302 T-ACGCATCCCACCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTA
585 TGA-GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *** *
159366 TATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCAA
649 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
**
159431 GGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACT-TTTTTCTTCGTC-GAGGC
714 GGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCC-CTATTTTTCTTCGTCGGA-GC
* * * * *
159494 ACCATCGTCGGAGCATCACCGGAGAACCTGATC-GACGCATTGGGGTTTCAATGATC-GGGGGCC
777 ACCATCGTCGGAGCATCATCGGAGAACCTGACCGGACGCATTGGGGTTCCGACGATCGGGGGGCC
* *
159557 CGAGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
842 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
159618 TATCCCTCATCAAACCTCAAGAACTCACAACTCCTTAAAGAGCATTGGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
159683 TGCCAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTAGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
159748 ATTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAA
131 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA
* * * * * *
159813 CTTTGGGGCGAAAACTACTTCTGAAAAAATTTTAAAAAATCCCGAATCGTAACAAGTTTCGAAAA
196 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA
159878 TCATGAAAAATAGAAAA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
159942 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
*
160007 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCTACCCGCC
391 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCC
160072 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAG
456 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATC-G
** * * * * ** *
160136 ACCGGACAGAGGGTTACGGTAGCAGGATCAGCAGCACATAGAATGGGACCCGACCGATCCCCAGA
519 ACCAAACTGAGGGTTACGGCAGCAGGATCGGCAGCACATAGAAGGGGACCCGGTCGATCCCCGGA
* * * * *
160201 TTGAGCATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTACGCA
584 TTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
160266 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCCGACCAGACCGA
649 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * *
160331 GGGTTACAGCAGCACATACTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGAGCAC
714 GGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCCTATTTTTCTTCGTCGGAGCAC
* * * *
160396 CATCTTCGAAGCATCATCAGTGAACCTGACCGGTA-GCATTGGGGTTCCGACGATCGGGGGGCCC
779 CATCGTCGGAGCATCATCGGAGAACCTGACCGG-ACGCATTGGGGTTCCGACGATCGGGGGGCCC
*
160460 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATCTTGGCCCCC
843 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
160521 TATCCCTCATCAAACCTTGAG-ACGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTG
1 TATCCCTCATCAAACCTCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
160585 CTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
65 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
160650 CACTTTGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAAAAAAAATAAAAGGATCACGTCTACCA
130 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCA
* * * * ** *
160715 ACTTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAA
195 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAA
* *
160780 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
260 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
160845 GTATG-ATCTTACAAGCCATAAAAAAGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
325 GTATGAAT-TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * *
160909 ACCTACCACCCTATCGATCCATGACTTGCGCATCCTGTGTCTCTGGCCAGCATAGTGCCCGCCCT
389 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCG
* * *
160974 CCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCGTACGAAGTTCATTCCCAGTCTAAGATTG
454 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCG
* ** * * * *
161039 AACCAAA-TCGAGGGTTATGGTTGCAAGATCGGTAGCACGTAG-AGAGGGACCCGGTCGATCCCT
519 -ACCAAACT-GAGGGTTACGGCAGCAGGATCGGCAGCACATAGAAG-GGGACCCGGTCGATCCCC
* * * ** * * * *
161102 GGCTTGCGCATCCCGCCCTTCTGGCCGATTAAGGGCCTGCACGCTCGTTTCGTGGGTTCACTTAG
581 GGATTGAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
161167 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAA
646 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-A
** * * * * *
161231 TTGAGGGTTACGGTAGGACATGCTGGGCTCAAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
710 CCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCCTATTTTTCTTCGTCGGA
* * * * * *
161296 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGAGGCATTGAGGTTCTGGCGATCGGGGGG
775 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGACGCATTGGGGTTCCGACGATCGGGGGG
* ** *
161361 GCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCCAGTACTTGGCCCTTATATTGGCCCGC
840 CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
161423 TATCCCTCATGAAACCTCAAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
161488 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
** * *
161553 ACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATAACAACAAAAATACAAGCATCATGTCTACCA
131 ACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCA
* * * *
161618 AGTTTGGGGCCAAAAATTCTTCCGAAAAAATTTTACAAAATCTCGAACCGTAAAA
195 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA
161673 TTTTACAAAA
Statistics
Matches: 2588, Mismatches: 309, Indels: 88
0.87 0.10 0.03
Matches are distributed among these distances:
882 1 0.00
883 220 0.09
884 50 0.02
885 2 0.00
886 2 0.00
889 1 0.00
890 21 0.01
891 440 0.17
892 134 0.05
893 293 0.11
894 14 0.01
899 56 0.02
900 240 0.09
901 21 0.01
902 206 0.08
903 398 0.15
904 488 0.19
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (902 bp):
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCC
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGAC
CAAACTGAGGGTTACGGCAGCAGGATCGGCAGCACATAGAAGGGGACCCGGTCGATCCCCGGATT
GAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
GTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCCTATTTTTCTTCGTCGGAGCACCA
TCGTCGGAGCATCATCGGAGAACCTGACCGGACGCATTGGGGTTCCGACGATCGGGGGGCCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
Found at i:161203 original size:26 final size:26
Alignment explanation
Indices: 161167--161219 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
161157 GTTCACTTAG
*
161167 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
161193 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
161219 G
1 G
161220 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:161672 original size:25 final size:25
Alignment explanation
Indices: 161644--161691 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
161634 TTCTTCCGAA
161644 AAAATTTTACAAAATCTCGAACCGT
1 AAAATTTTACAAAATCTCGAACCGT
161669 AAAATTTTACAAAATCTCGAACC
1 AAAATTTTACAAAATCTCGAACC
161692 CACCTACCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.21, G:0.06, T:0.27
Consensus pattern (25 bp):
AAAATTTTACAAAATCTCGAACCGT
Found at i:162464 original size:26 final size:26
Alignment explanation
Indices: 162428--162480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
162418 GTTGACTTAG
162428 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
162454 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
162480 G
1 G
162481 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:163361 original size:26 final size:26
Alignment explanation
Indices: 163332--163384 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
163322 GTTGACTTAG
*
163332 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
163358 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
163384 G
1 G
163385 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:163861 original size:885 final size:879
Alignment explanation
Indices: 161999--164656 Score: 3246
Period size: 885 Copynumber: 3.0 Consensus size: 879
161989 CTTGGCTCTT
** * * *
161999 GAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGT
* * * * *
162064 CATCTTGCCATGAAACTTTACGTGACGGCTTAAGGGACCATTGTATGAGTTTACAGGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
162129 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
131 ATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-
* * * * * *
162194 CTTGCGCATCCCGTCTCTCTGGTCGGCGTGGTGCCCGCCCGCCCGTCCGTCCGTTCATTTCATTG
195 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATTG
* * * * ** *
162259 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCAAGGGTTACGATAGT
260 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGC
* * * * ** * * *
162324 AGGATCGGCAACACGTAGAGGGGGACCTGGCCGATCCCTGGTTTACGCATCTC-GCCTCTCTTGT
325 AGGATCGGCAGCACGTAGAGGGGGACC-CGCCGAACCCTGGCTTGTGCATCCCGGCC-CTCTGGC
* *
162388 C-AGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
388 CGA-CTGAGCACCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
162452 AAGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGAATCGAGGGTTGCGACAGCACATGCTG
452 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACT-GAGGGTTTCG-CTG-----GGTC
* * ** **
162517 GGCTTGGGCATGTGCTGGTGCAGCATTTTTCTTTGTCGGGGCACCATCACCGGAGCATCGTTGGA
510 GACTTGGGCA--TAC--G-G-AG-----TTCTTCATCGGGGCACCATCACCGGAGCATCACTGGA
* * * * *
162582 GAACCTGACCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCATATGATG
564 GAACCTGACCCGCGGCATT-GGGTTCCGACGATC-GGGGGGCC--GGGGGTGTGTGCACATGATG
162647 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTC
625 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTC
* * * * **
162712 ACACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGTCGTTAAATTGTCAAAA
690 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
162777 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-AAGTTTTTAGCTGAATGTTT
755 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA-TTTCGAGTTTTTAGCTGAAT-TTT
* * * *
162841 TTGTGCATACCAAAAAAAATACAAGGATCATGTCTGCCAAGTTTGGGGCCAAAACTCTTTCC
818 TTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCTTTCC
* * * * * * * *
162903 AAAAAAATTTTAAAAAATCCTGAACCGCATAAAGGTTCAGAAATTGTGAAAAATAAAAAATGAGT
1 GAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGT
162968 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
163033 ATGGAATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG
131 ATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-G
* * * ** *
163098 CTTGCGCATCCTGTCTCTCTGGCCGGCATAGTGCCCACCCATCCACCCGCCCGCTCGTTTCATTG
195 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATTG
* * * *
163163 GTTGGCTTAGGCATACGAAGTTCATTCATAGTCTAAGATC-GAACCACACCGAGGGTTGCGGCAG
260 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ATCAGACCGAGGGTTGCGGCAG
* * * * *
163227 CAGGATTGGCAGCACGTAGAGGGGGACCCGATCGACCCCCGGCTTGTGCTTCCCGGCCCTCTGGC
324 CAGGATCGGCAGCACGTAGAGGGGGACCCG-CCGAACCCTGGCTTGTGCATCCCGGCCCTCTGGC
*
163292 CGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
388 CGACTGAGCACCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * *
163357 AGCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGGACTGAGGGTTTCG-TGGGTTGACTTAG
453 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTGAGGGTTTCGCTGGGTCGACTTGG
* *
163421 GCATACGGAGTTCATTCATCGGGGCACCATCATCGGAGCATCACTGGAGAACCTGACCCGCGACA
517 GCATACGGAGTTC-TTCATCGGGGCACCATCACCGGAGCATCACTGGAGAACCTGACCCGCGGCA
* * * *
163486 TTAGGGTTCCGATGATCGGAGGGGCTGGGGGTGTGTGCTCATGATGTGCGATGGCTGCTGGTACT
581 TT-GGGTTCCGACGATCGG-GGGGCCGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACT
* *
163551 TGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
644 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCAT
* *
163616 TTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTGTTCAA
709 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
163681 ATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGATGAAATTTTTTGTGCATGCCAACAAAAAT
774 ATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTG-AATTTTTTGTGCATGCCAACAAAAAT
163746 ACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTGC-TTCC
838 ACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACT-CTTTCC
* *
163788 GAAAGAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGT
1 GAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGT
*
163853 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAA
66 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
163918 ATGGTATTGGCACGCAGAAATAT-ATAGATGTGCCCAATCCCACCTACCACCCTATCTATCCACG
131 ATGGAATTGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-
* * * * * * * *
163982 GCTTGCGCATCCCGTCTCTCTAGCCGGGGTAGAGCCCGCCCGCCCGCCCTCCTGCTTGTTTCGTC
194 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATT
* * * * *
164047 AGTTGGCTTAGGCATATGGAGCTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAG
259 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAG
* * * * * *
164112 CAGGATCGACAGCATGCAGAGGGGGACCCGGCTGAACCTTGGCTTGTGCATCCCGCCCCTCTGGC
324 CAGGATCGGCAGCACGTAGAGGGGGACCC-GCCGAACCCTGGCTTGTGCATCCCGGCCCTCTGGC
* * * * *
164177 CGGCTGAGCACCCGTATGCTTGTTTTGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAATCTA
388 CGACTGAGCACCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
164242 AGCATACGGAGTTTATTCCCAGTCTAAGATCGGACCCAACCGAGGGTTGTGACAGCACATGCTGG
453 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGACTGAGGGTT-T-------C--GCTGG
* **** * * * *
164307 GCTCGAGCATGTGCTGGTGC-CACATTTTTCTTCATCGAGGAATCATCACCGGAGCATCACCGGA
507 G-TCGA-C---T--TGG-GCATACGGAGTTCTTCATCGGGGCACCATCACCGGAGCATCACTGGA
* * *
164371 GAACCTGA-CTGACGGCATTGGGCTTCCGACGATTGGGGGGACCAGGGGGGTGTGCGCACATGAT
564 GAACCTGACCCG-CGGCATTGGG-TTCCGACGATCGGGGGG-CC--GGGGGTGTGTGCACATGAT
* * *
164435 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACG
624 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACT
164500 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
689 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
164565 AATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
754 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATT-TT
164630 TTGTGCATGCCAACAAAAATACAAGGA
818 TTGTGCATGCCAACAAAAATACAAGGA
164657 CCACGTCTCA
Statistics
Matches: 1517, Mismatches: 198, Indels: 78
0.85 0.11 0.04
Matches are distributed among these distances:
884 4 0.00
885 676 0.45
886 12 0.01
887 62 0.04
891 2 0.00
892 1 0.00
893 2 0.00
895 3 0.00
896 4 0.00
897 13 0.01
898 1 0.00
901 10 0.01
902 56 0.04
903 13 0.01
904 650 0.43
905 8 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (879 bp):
GAAAAAATTTTAAAAAATCCTGAACTGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGC
TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATTGG
TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCA
GGATCGGCAGCACGTAGAGGGGGACCCGCCGAACCCTGGCTTGTGCATCCCGGCCCTCTGGCCGA
CTGAGCACCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGACTGAGGGTTTCGCTGGGTCGACTTGGGCAT
ACGGAGTTCTTCATCGGGGCACCATCACCGGAGCATCACTGGAGAACCTGACCCGCGGCATTGGG
TTCCGACGATCGGGGGGCCGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
TATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGAT
CAGGTCTACCAAGTTTGGGGCCAAAACTCTTTCC
Found at i:164253 original size:26 final size:26
Alignment explanation
Indices: 164217--164269 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
164207 GTAGACTTAG
164217 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
164243 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
164269 G
1 G
164270 ATCGGACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:165400 original size:793 final size:799
Alignment explanation
Indices: 163860--165461 Score: 2368
Period size: 793 Copynumber: 2.0 Consensus size: 799
163850 AGTCGTCTTG
* * *
163860 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGTAT
1 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * **
163925 TGGCACGCAGAAATATATAGATGTGCCCAATCCCACCTACCACCCTATCTATCCACGGCTTGCGC
66 GGGCACGCAGAAATATATAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTAAGC
* * * *
163990 ATCCCGTCTCTCTAGCCGGGGTAGAGCCCGCCCGCCCGCCCTCCTGCTTGTTTCGTCAGTTGGCT
131 ATCCCATCTCTCTAGCCGAGGTA-AG-CCGCCAGCCCG----CCTGC-TGTTTCGTCAGTTGGAT
* * * * * * *
164055 TAGGCATATGGAGCTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCG
189 TAGGCATACGGAACTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTATGGCACCAGGATCA
* * *
164120 ACAGCATGCAGAGGGGGACCCGGCTGAACCTTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAG
254 ACAGCACGCAGAGGGGGACCCGGCTGAACCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
164185 CACCCGTATGCTTGTTTTGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACG
319 CACCCGTACGATCGTTTTGTGGGTAGACTTAGGCAAACGGAGTTCATTCCCAATCTAAGCATACG
* *
164250 GAGTTTATTCCCAGTCTAAGATCGGACCCAACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGC
384 GAGTTCATTCCCAGTCTAAGATCGGACCCAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* * *
164315 ATGTGCTGGTGCCACATTTTTCTTCATCGAGGAATCATCACCGGAGCATCACCGGAGAACCTGAC
449 AAGTGCTGGTGCCACATTTGTCTTCATCGAGGAACCATCACCGGAGCATCACCGGAGAACCTGAC
* * * *
164380 TGACGGCATTGGGCTTCCGACGATTGGGGGGACCAGGGGGGTGTGCGCACATGATGTGTGATGGG
514 CGACGGCATTGCGCTTCCGACGATCGGGGGGACCAGGGGGGTGTGCGCACATGATGTGCGATGGG
164445 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCT
579 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCT
*
164510 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCA
644 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
164575 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
709 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTGTTTTGTGCATGC
164640 CAACAAAAATACAAGGACCACGTCTCA
774 CAACAAAAATACAAGGACCACGTCT-A
164667 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
1 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
164732 GGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAAG
66 GGGCACGCAGAAATAT-ATAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTAAG
* * * *
164796 CATCCCATCTCTCT-GTCGATGT-AG-TGCCAGCCCG-CT-C-GTTT-GTCGGTTGGATTAGGCA
130 CATCCCATCTCTCTAGCCGAGGTAAGCCGCCAGCCCGCCTGCTGTTTCGTCAGTTGGATTAGGCA
* * * *
164854 TACGGAATTCATTCCCAGTTTAAGAT-TGAACTGGACCGAGGGTTATGGTACCAGGATCAACAGC
195 TACGGAACTCATTCCCAGTCTAAGATCAGAAC-GGACCGAGGGTTATGGCACCAGGATCAACAGC
* * *
164918 ACGTAGCA-GGGGACCCGG-TCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
259 ACGCAG-AGGGGGACCCGGCT-GAACCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * *
164981 CCGTACGATCGTTTCT-TGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTCTAAGCATATGGA
322 CCGTACGATCGTTT-TGTGGGTAGACTTAGGCAAACGGAGTTCATTCCCAATCTAAGCATACGGA
* *
165045 GTTCATTCCCAGTCTAAGATCGGA-CCACACTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
386 GTTCATTCCCAGTCTAAGATCGGACCCA-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
* * * ** *
165109 AGTGCTGGTGCCACATTTGTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
450 AGTGCTGGTGCCACATTTGTCTTCATCGAGGAACCATCACCGGAGCATCACCGGAGAACCTGACC
*
165174 GACGGCATTTGCG-TTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGG
515 GACGGCA-TTGCGCTTCCGACGATCGGGGGGACCAGGGGGGTGTGCGCACATGATGTGCGATGGG
*
165238 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
579 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCT
165303 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
644 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
165368 CTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGGGTTTTTACCTGAATTTTTTTGTGCATGC
709 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTGTTTTGTGCATGC
*
165433 CAACAAAAATACAAGGATCACGTCTA
774 CAACAAAAATACAAGGACCACGTCTA
165459 CCA
1 CCA
165462 AGTTTGGGGC
Statistics
Matches: 721, Mismatches: 67, Indels: 29
0.88 0.08 0.04
Matches are distributed among these distances:
792 11 0.02
793 551 0.76
794 10 0.01
796 1 0.00
797 2 0.00
802 8 0.01
804 2 0.00
806 5 0.01
807 130 0.18
808 1 0.00
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.25
Consensus pattern (799 bp):
CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
GGGCACGCAGAAATATATAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTAAGC
ATCCCATCTCTCTAGCCGAGGTAAGCCGCCAGCCCGCCTGCTGTTTCGTCAGTTGGATTAGGCAT
ACGGAACTCATTCCCAGTCTAAGATCAGAACGGACCGAGGGTTATGGCACCAGGATCAACAGCAC
GCAGAGGGGGACCCGGCTGAACCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGT
ACGATCGTTTTGTGGGTAGACTTAGGCAAACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCCAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCAAGTGCT
GGTGCCACATTTGTCTTCATCGAGGAACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGC
ATTGCGCTTCCGACGATCGGGGGGACCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTGTTTTGTGCATGCCAACAAA
AATACAAGGACCACGTCTA
Found at i:165777 original size:26 final size:26
Alignment explanation
Indices: 165739--165794 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
165729 TGAGTTGACT
165739 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
* * *
165765 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
165791 TAAG
1 TAAG
165795 ATTGGATAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:167427 original size:904 final size:896
Alignment explanation
Indices: 165670--167970 Score: 3218
Period size: 904 Copynumber: 2.6 Consensus size: 896
165660 CCACCCTATC
*
165670 GATCCACGGCTTGCGCATCCCG-CCGCTCTGGCCGGCTGAACGCCCGAACGCTCGTTTCG-TGAG
1 GATCCCCGGCTTGCGCATCCCGCCCG-TCTGGCCGGCTGAACGCCCGAACGCTCGTTTCGTTG-G
* * * *
165733 TTGACTTA-AGCATACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCTAGTCTAAGAT
64 TTGACTTAGA-CATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGAT
* * * * * * * *
165797 TGGAT-AGGACCCAAGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTTGTGCCACATTTTT
128 CGAATCA-GACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
165861 CTTCGTCGGGGCACCATCGTCGGAGAACCTGA-AA-TG-CGAC-ATA-AGGGTTTCGGA-GATCG
192 CTTCGTCGGGGCACCATCGT-GGAGAACCGGAGAACTGACGACGATATTGGG-TTCCGACGATCG
*
165920 GGGGGGCCGAGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
255 GGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
165985 CCCCCTATCCATCATCAAACCTCAAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGG
319 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
166050 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCT
384 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * * *
166115 TGTACACTTCGGGTTTTTACCTGAATTTTTTTGCGCATTCCAACAAAAATACAAGGATCACGTCT
449 TGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * * *
166180 ACCAAGTTTGGGGCAAAAACTCCTTTCGAAAAAATATTAAAAAATCTCGAACCGTAAAAAGTTTT
513 AACAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATATTAAAAAATCCCAAACAGCAAAAAGTTTC
*
166245 GAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGAC
578 AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
166310 CATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCAGGCAAAAATATGAATATGTGCCTAAA
643 CATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCAGGCAAAAATATGAAGATATGCCTAAA
* * *
166375 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTTGTGCTCGC
708 CCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGC
166440 CCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
773 CCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * * * *
166505 TCAGATCGGACTGAGGGTTGTAGCAGTAGGATCGGTAGCACACAGAGGGGGACCCGACA
838 TCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGGAAGCACACAAAGGGGGACCCGACA
* * * * *
166564 GATCCCCGGCTTGCGCATCCGGCCCGTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCGTTGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAACGCCCGAACGCTCGTTTCGTTGGTT
* *
166629 GGCTTAGACATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA
66 GACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA
*
166694 ATCAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
131 ATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
*
166759 GTCGGGACACCATCGTTGGAGCATCACCGGAGAACCTGACCGACGATATTGTGGTTCCGACGATC
196 GTCGGGGCACCATCG-TGGAG-A--ACCGGAGAA-CTGA-CGACGATATTG-GGTTCCGACGATC
** *
166824 GGGGTTGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
254 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
166889 CCCCCTATCCCGT-ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
319 CCCCCTATCCC-TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
166953 GTTTACTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
383 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
167018 TTGTACACTTCATGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCACGTC
448 TTGTACACTTCA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
167083 TAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCCAAACAGCAAAAAGTTT
512 TAACAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATATTAAAAAATCCCAAACAGCAAAAAGTTT
* * *
167148 CAAAAATCGTGAAAAATAGAGAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
577 CAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGA
* * *
167213 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATATGCCTAA
642 CCATTGTATGAATTTACAAGCCATAAAAATCGCATTGGCAGGCAAAAATATGAAGATATGCCTAA
* *
167278 ACCCACCTACCACACTATCGATCCACTGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGC-CT
707 ACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTC-
* * *
167342 GCCCGCCCGCCC-CGTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
771 GCCCGCCCGCCCGCCT-GCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * * * * * *
167406 AGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATCGGAAGTACGCAAAGGGGGACCTGGCC
835 AGATCAGACCGGACCGAGGGTTGTAGCAGCAGGATCGGAAGCACACAAAGGGGGACCCGACA
* * * ** * * *
167468 GATCCCTGGCTTGCGCATCCCACCCCTCTACCCGGTTGAACGCCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAACGCCCGAACGCTCGTTTCGTTGGTT
* *
167533 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCGCAGTCTAAGATC-A
66 GACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA
* * * * *
167597 GATCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGGGTCGTATTTTTCTT
131 -ATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * ** * * *
167662 CATCGGGGCACCATCGCCGGAGAA-C-TTGAAC-GATGGC-AT-TGGGGTTCCGACGATCGGGGG
195 CGTCGGGGCACCATCG-TGGAGAACCGGAGAACTGACGACGATATTGGGTTCCGACGATCGGGGG
* * * * * *
167722 GGCCGGGGGGTTATGCGCACATCATGTGCAATGGGTGCTGGTACTTGGCCCTCAAATTGGCCCCC
259 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
167787 TATCCCTCATCAAACCTCGAGAACTGACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGC
324 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
167852 TACCAGTAGCCATTAAAGTGTCTTAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTAC
389 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
167917 ACTTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGAT
454 ACTTC-AGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGAT
167971 TACCTCTACC
Statistics
Matches: 1249, Mismatches: 133, Indels: 50
0.87 0.09 0.03
Matches are distributed among these distances:
892 1 0.00
893 211 0.17
894 215 0.17
895 11 0.01
896 2 0.00
897 7 0.01
898 3 0.00
899 3 0.00
900 3 0.00
901 1 0.00
902 4 0.00
903 8 0.01
904 766 0.61
905 14 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (896 bp):
GATCCCCGGCTTGCGCATCCCGCCCGTCTGGCCGGCTGAACGCCCGAACGCTCGTTTCGTTGGTT
GACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGA
ATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCGTGGAGAACCGGAGAACTGACGACGATATTGGGTTCCGACGATCGGGGGGG
CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTT
TGGGGCAAAAACTCCTTCCGAAAAAATATTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATCGCATTGGCAGGCAAAAATATGAAGATATGCCTAAACCCACCTA
CCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGC
CCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCG
GACCGAGGGTTGTAGCAGCAGGATCGGAAGCACACAAAGGGGGACCCGACA
Found at i:167577 original size:26 final size:26
Alignment explanation
Indices: 167540--167592 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
167530 GTTGACTTAG
*
167540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
167566 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
167592 G
1 G
167593 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:168338 original size:26 final size:26
Alignment explanation
Indices: 168301--168353 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
168291 GTTGACTTAG
168301 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
168327 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAATCTAA
168353 G
1 G
168354 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:169066 original size:26 final size:26
Alignment explanation
Indices: 169028--169083 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
169018 TGAGTTGACT
169028 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
* * *
169054 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
169080 TAAG
1 TAAG
169084 ATTGGATAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:169922 original size:26 final size:26
Alignment explanation
Indices: 169893--169942 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
169883 TGACTTAGGC
169893 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
169919 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
169943 TATCGGGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:170794 original size:26 final size:26
Alignment explanation
Indices: 170764--170814 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
170754 GATGACTTAG
*
170764 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
170790 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
170815 TGATTTGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:172255 original size:901 final size:901
Alignment explanation
Indices: 170367--174470 Score: 5741
Period size: 901 Copynumber: 4.6 Consensus size: 901
170357 ACTCCTTCCG
* * *
170367 AAAAGTGTCAAAAATCTTGACAAATAGAAATATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAA-ATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * * * *
170432 CTTAAGGGATCGTTGTATGAATTTACAGGCCATAAAGATAGCATTGGCACACAAAAATATGAAGA
65 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * * * *
170497 TTTGCCTAAACCAACATACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTTTGGCCGACG
130 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * *
170562 TAGTTCCCGCCCGCCCG---CCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
195 TAGTGCCCGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * *
170624 AGACTAAGATTGGACCGGACTGAAGGTTGCGGCAGTAGGATCGGCAGCACAG-AGAGGGGGACCC
260 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC-GCAGAGGGGGACCC
* * * * *
170688 AGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCT-TATTTCAT
324 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGA-TTCGT
* * *
170752 GGGATGACTTAGGCATACGGAGTTCATTCCGAGTCTAAGCATACGGAGTTCATTCCCAGTCTATG
388 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * * * *
170817 ATTTGACCGGACCGAGGGATACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTT
453 ATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
170882 TCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGTGTTCCG
518 TCTTCATCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGG-GTTCCG
* *
170947 ACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTAT
582 ACGATCGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
171012 ATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTT
646 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
171077 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAA
711 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
171142 AATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAGGGATCA
776 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCA
* * **
171206 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAATCACA
841 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
** *
171267 AAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
171332 TTAAGGTACTATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
*
171397 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
131 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* *
171462 AGTGCCCGCCCGCCCGCCCTCCTGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
196 AGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * *
171527 AGTCTAAGATCAGATCAGACCGAGGGTTACGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCG
260 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
** * * *** *
171592 GCCGATCCTTGGCTTGCACATCCTGCCCCTCTGGCCCATTGAGCGCCCGGACGCTCGATTCGTGG
325 GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGATTCGTGG
* *
171657 GTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTAT-ATTCCCAGTCTAAGA
390 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT-TCATTCCCAGTCTAAGA
**
171721 TCAGACCCAACCGAGGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTT
454 TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * *
171785 CTTCATCGAGGCATCATCACCGGAGCATCGCCAGAGAACCTGACTGACGGCATTGGGGTTCCGAT
519 CTTCATCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGAC
171850 GATCGGGGGGACCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-TATAT
584 GATCGGGGGG-CCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
171914 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
648 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
171979 AGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
713 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
172044 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACG
778 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACG
* *
172109 TCTACCAAGTTTGGGGCCAAAAGTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTA
843 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
* ** * * *
172168 AAAAGATTGGAAAATCATGAAAAATAGAAAATGATTCGACTTGCCATGAAACTTCACGTGAAGGC
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* ** **
172233 TGAAGGGACCATTGTATGAATTTACAAGCCATAAATTTGGCATTGGCATGCAGAAATATGAAGAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
*
172298 GTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
131 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
172363 AGTGCCCACCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCC
196 AGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * ** * ** *
172428 AATCTAAGATCAGACTGGATCGAGGGTTGCGATAGCAAGATCAACAGCACGCAGAGGGGGACCCT
260 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG
* * * * * *
172493 ACCGATCCCCAGCTTGCGCATCCCG-CCCTATTGGTCGGCTGAGCGCCCGCACGCTGGTTTCGTG
325 GCCGATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCACGCTCGATTCGTG
* * * *
172557 GGTTGACTTAGGCATACAGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCATTCTAATA
389 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * ** * *
172622 TCGGGCTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCCAGCATTTGCTGGTGTCGCATTTTT
454 TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * **
172687 CTTCACCCG-GTCACCATCACCGGAGCATCGCCGGACAACCTGAC-CCCGGCATTGGGGTTCCGA
519 CTTCA-TCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGA
* ** *
172750 C-AGTCGAAGGGGCTGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTAT
583 CGA-TCG-GGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
172814 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
646 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
172879 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
711 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
172944 AATCTTGTACAC-TCTGACTTTTTAGCTGAATTTTTTT-TGCAAGCCAACAAAAATACAAGGATC
776 AATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATC
* * * ** *
173007 ACGTCTACCAAGTTTGGGACAAAAACTCCCTCTGAAAAAATTTTAAAAAATCCCGAATCGTA
840 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
* * *
173069 AAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTTGTCTTGCCATGAAACTTCAGGTGAAGGC
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * * ***
173133 TTAAGGGACAATTGTATGAATTTACAAGGCATAAAAATAGCATTGGCATGTAGAAATATGAAGAT
66 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * * * * *
173198 GTGCCTAAACCTACCTACCACCCTATCAATCCACAGCTTCCGCATCCCGTCTCTCTTGCC-AGGG
131 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CG
* * * * ** *
173262 TAGTGCCCACCCGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTGGGTGTACGAAGTTCATTCC
195 TAGTGCCCGCCCGCCCGCC-CCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * ** * * * * ** *
173327 TAGTCTAAGATTAGATCGAACTAAGTGTTGCAGCAGCAGGATTGCCATTACGCAGAGGGGGACCT
259 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC
** * * * *
173392 GATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCTTG
324 GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGATTCGTG
*
173457 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGA
389 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * **
173522 TCGGACTGGACCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
454 TCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *
173587 CTTCATCGAGGCATCATCATCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGAC
519 CTTCATCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGAC
* *
173652 GATCGGGGGGACTAGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
584 GATCGGGGGG-CCA-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
173717 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTA
647 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
173782 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCGCAAA
712 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
173847 ATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAAAAAAAATACAAGGATCAC
777 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCAC
* * * * * *
173911 GTCTACCAAGTTTAGGGCCAAAACTCCCTCCGAAAAAATTTTAAAAAATCTCAAACCCTA
842 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
*
173971 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTTACGTGAAGGC
1 AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
174036 TTAAGGGACCATTGTACGAATTTGA-AAGCCATGAAAATGGCATTGGCACATAGAAAATATGAAG
66 TTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCACACAG-AAATATGAAG
* * *
174100 ATGTGCCTAAACCCACCTACCATCTTATCGATCCACGGCTTGGGCATCCCGTCTCTCTGGCCGAC
129 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* *
174165 GTAGTGCCCGCCCGTCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
194 GTAGTGCCCGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** *
174230 CCAGTCTAAGACCAGACCGGACCAAGGGCTGCGGCAATAGGATCGGCAAG-ATGCAGAGGGGGAC
258 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC-AGCACGCAGAGGGGGAC
* * *
174294 CGGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCG-TTTG
322 CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGATTCG
* * *
174358 ATGGGTTGACTCAGGCATA-GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGACTA
387 -TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
174422 AGATCAGACCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCAT
451 AGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
174471 TTTTCTGCTA
Statistics
Matches: 2835, Mismatches: 335, Indels: 65
0.88 0.10 0.02
Matches are distributed among these distances:
899 167 0.06
900 658 0.23
901 754 0.27
902 614 0.22
903 400 0.14
904 240 0.08
905 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTGCCCGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGATTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
TCATCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGA
TCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTA
Found at i:172604 original size:26 final size:26
Alignment explanation
Indices: 172568--172619 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
172558 GTTGACTTAG
*
172568 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
172594 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
172620 TATCGGGCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:173507 original size:26 final size:26
Alignment explanation
Indices: 173471--173520 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
173461 GACTTAGGCA
173471 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
173497 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
173521 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:174400 original size:25 final size:26
Alignment explanation
Indices: 174372--174423 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
174362 GTTGACTCAG
*
174372 GCATA-GGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGACTAA
*
174397 GCATACGGAGTTCATTCCTAGACTAA
1 GCATACGGAGTTCATTCCCAGACTAA
174423 G
1 G
174424 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGACTAA
Found at i:175085 original size:26 final size:26
Alignment explanation
Indices: 175049--175101 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
175039 GTTGACTTAG
175049 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
175075 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
175101 G
1 G
175102 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:175977 original size:26 final size:26
Alignment explanation
Indices: 175948--176003 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
175938 TGGGTTGACG
*
175948 TAAGCATACGGATTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
175974 TAAGCATACGGAGTTCATTCTCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
176000 TAAG
1 TAAG
176004 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:176892 original size:26 final size:26
Alignment explanation
Indices: 176841--176893 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
176831 GTTGACTTAG
* *
176841 GCATACGGAGTTCATTCCTAGCCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
*
176867 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
176893 G
1 G
176894 ATTGGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:177196 original size:890 final size:893
Alignment explanation
Indices: 174475--177966 Score: 4780
Period size: 890 Copynumber: 3.9 Consensus size: 893
174465 GGGCATTTTT
* *
174475 CTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTA
1 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
174540 CACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCGAAAAAAAATACAAGGATCACGTCTACCA
66 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * *
174605 AGTTTGGGACCACAACTCCTTCCATAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAA
131 AGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
174670 ATCATGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATT
196 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
174735 GTATGAATTTACAAGCCATAAAAATGGTGTTGGCACGCAAAAATATGAAGATGTGCCTAAACCCA
261 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCA
* * * * * *
174800 CCAACCACCTTATCGATCCATGACTTGCGCATCCTGTCTCTCTGGCCGCCGTAGTGCCCGCCTGC
326 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCC-GC
* * * *
174865 CCACGCGTTTCGA-CGGTTGGCTTAGGCATACGGAGCTCATTCCTAGTCTAAGATC-GAATCAGA
389 CCGCTCGTTTC-ATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG-ACCAGA
* *** * *
174928 CCGAGGGTTATGGTAGCAGGATCGGTGGCACGTA-AAGAGGGACCCGACCGATCCCCGGCTTGTG
452 CCGAGGGTTATGGCAGCAGGATCGCCAGCACGCAGAAG-GGGACCCGACCGATCCCCGGCTTGCG
174992 CATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
516 CATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* *
175057 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTT
581 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
** * *
175122 GCGGCAGCACATGCTAGGCTCTGGCATGTGCTGGTGTCGCATTTTTCTTCG-CTGGGGC-ACAAT
646 GCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCAAC-AT
* * *
175185 CGTCGAAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGG
709 CGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGG
175250 GGGTGTGCGC-C-CTAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
773 GGGTGTGCGCACAC-A-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
175313 TCATCAAACC-CTGAGAACTCAC-CCCCCTTAAAGAGCATTAGAGATTTTATAGGTTTG
836 TCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
175370 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTA
1 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
175435 CACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCA
66 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** * * *
175500 AGTTTTAGGCCAAAA-ATCCTTCCAAAAATATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAA
131 AGTTTGGGGCCAAAACA-CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * *
175564 AATCATGAAAAATAAAAAACAAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
195 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
175629 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCC
260 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCC
* * *
175694 ACCTACCACCCTATCGATCGACGGCTTGTGAATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG
325 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCC-G
** * *
175759 CTCGCCCGCCCTCTCGTTTTGTCGGTTGGCTTAGGGATAC-GAGTTTATTTCC-AGTCTAAGATC
385 C-CGCCCG----CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA-TTCCTAGTCTAAGATC
* * * * * * *
175822 ATACCGGGCTGAGGGTTGTGGCAGCAGGATCGCCAGCATGCAGAGGGGGACCCGACCGATCCCCG
444 AGACCAGACCGAGGGTTATGGCAGCAGGATCGCCAGCACGCAGAAGGGGACCCGACCGATCCCCG
* * *
175887 GCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACGTAAG
509 GCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
175952 CATACGGATTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGATC
574 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* *
176017 GAGGGTTGCGATAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGCATTTTTCTTCGTCGGGG-
639 GAGGGTTGCGATAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * *
176081 AACCATCGCCGGAGCATCGCCGTAGAACCTGACCGACGACATTGGGGTTTCGGTGATCGGGGGGG
704 AA-CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG
* * * ** *
176146 CCGGGGGATGTGTGTACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
768 CCGGGGGGTGTGCGCACACAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
176211 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATGTAACAGGTTTG
833 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* **
176272 CTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATCATCACAAAATCTTGTA
1 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
176337 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTATGTCTACCA
66 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * **
176402 AGTTTGGGGCCAAAACACCTTCTAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAA
131 AGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
* *
176467 ATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATT
196 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
176532 GTATGAATTTACAACCCATAAAAATTGTATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCA
261 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCA
*
176597 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C-CCACCC
326 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCGCCC
* * *
176660 GCTCGTTTCATCGGTTCGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACCAA
391 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA
* * * * * * *
176725 GGGCTATGGTAGCAGGATTGGCAGCACGCAGAAGGGGA-CCGACTGATCCCCGGCTTGTGGATCC
456 GGGTTATGGCAGCAGGATCGCCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * *
176789 CACCCTTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTC
521 CGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * *
176854 ATTCCTAGCCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGA-CTGAACCGAGGGTTGCGA
586 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGA
* * * * * *
176918 TAGCACATACTATGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGGCAACTTCGTCGG
650 TAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAACATCGCCGG
* * * *
176983 AGCATCACCGGAGAACCTGATCGACGGCTTTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTG
715 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
* * *
177048 CGCACACAATGTGTGATGGGTGCCGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAAC
780 CGCACACAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
177113 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
845 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
** * *
177162 CTATCGGTAGCGATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
1 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
177227 CACTTCGAGTTTTTAGCTGAATTGTTTTGTCCATGCCAACAATAATACAAGGATCACGTCTACCA
66 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* ** * * * *
177292 ACTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAATAAATCCTGAACCACAAAAAGTTTCAAAA
131 AGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
*
177357 ATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
196 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * *
177422 GTATGAATTTACAAGCCATAAAAATGGCATCGGCACA-CAGAAATATAAAGATGTGCCTAAACCC
261 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAAAAATATGAAGATGTGCCTAAACCC
* * *
177486 ACCTACCACCCTTTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-C-CTGCC
325 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCGCC
* * * * * * *
177549 CTCTCGTTTCATCGGTTGGCTTAGGGATGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCTG
390 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCG
* * *
177614 AGGGTTGTGGCAGCAGGATCGCCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATC
455 AGGGTTATGGCAGCAGGATCGCCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * * *
177679 TCGCCCCTCTGGTCGGCTGAGCACCCGCATGCTCGTTTCATGGGTTGA-TGTAGGCATATGGATT
520 CCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT-TAGGCATACGGAGT
* *
177743 TCATTCCCAGTCTAAGCATATGGAGTTCATT-CCAGTCTAAGATCGGACCAGACCGAAGGTTGC-
584 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCG
* * * * * * *
177806 CTCAGCACATGCTGGGCTCGGGCATGTGCTGGCGTCGCATTTTTCTTCATTGGGGCACCATCGCC
649 AT-AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAACATCGCC
* * * *
177871 GGAGCATCGCCGGAGAACCTGACCAACGGCATTGGGGTTCCGGTGATCCGGGGGGTCGAGGGGGT
713 GGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGT
* ** *
177936 GTGCGTACATGATGTGTGATGGGTGCTGGTA
777 GTGCGCACACAATGTGCGATGGGTGCTGGTA
177967 TGTGCTCGCC
Statistics
Matches: 2270, Mismatches: 294, Indels: 70
0.86 0.11 0.03
Matches are distributed among these distances:
889 3 0.00
890 934 0.41
891 192 0.08
894 5 0.00
895 341 0.15
897 1 0.00
898 3 0.00
899 7 0.00
900 1 0.00
901 77 0.03
902 674 0.30
903 32 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (893 bp):
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCGCCC
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGA
GGGTTATGGCAGCAGGATCGCCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGAT
AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAACATCGCCGGA
GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGC
GCACACAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
Found at i:177783 original size:25 final size:26
Alignment explanation
Indices: 177732--177783 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
177722 GTTGATGTAG
*
177732 GCATATGGATTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
177758 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
177783 G
1 G
177784 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:178218 original size:26 final size:26
Alignment explanation
Indices: 178168--178220 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
178158 GTTGACTTAG
* *
178168 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACACTCTAA
*
178194 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCACACTCTAA
178220 G
1 G
178221 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACACTCTAA
Found at i:178372 original size:436 final size:436
Alignment explanation
Indices: 177578--178401 Score: 1125
Period size: 436 Copynumber: 1.9 Consensus size: 436
177568 CTTAGGGATG
* * *
177578 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGGCTGAGGGTTGTGGCAGCAGGATCGCCAGCACG
1 CGGAGTTCATCCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGCCAGCACG
* * ** * * *
177643 CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCACCCGCA
66 CAGAGGGGAACCCGACCGATCCCCAACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCACCCGCA
* * * * * *
177708 TGCTCGTTTCATGGGTTGATGTAGGCATATGGATTTCATTCCCAGTCTAAGCATATGGAGTTCAT
131 CGCTCATTTCATGGGTTGATGTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCAT
* * *
177773 TCCAGTCTAAGATCGGACCAGACCGAAGGTTGCCTCAGCACATGCTGGGCTCGGGCATGTGCTGG
196 TCCACTCTAAGATCAGACCAGACCGAAGGTTGCCTCAGCACATGCTAGGCTCGGGCATGTGCTGG
* * * * *
177838 CGTCGCATTTTTCTTCATTGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAACGGCAT
261 CGCCGCATTTTTCCTCATCGGGGCACCATCGCCGGAACATCGCCGGAGAACCTAACCAACGGCAT
** *
177903 TGGGGTTCCGGTGATCCGGGGGGTCGAGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTAT
326 TGGGGTTCCGACGATCCGGGGGGTCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAT
177968 GTGCTCGCCCGTCCGCCCTCTTGTTTTGTCTGTTGGCTTAAACATA
391 GTGCTCGCCCGTCCGCCCTCTTGTTTTGTCTGTTGGCTTAAACATA
* * *
178014 CGGAGTTCATCCCCAGTCTAAGATCAGACTGGACTGAGTGTTGTGACAGCAGGATCGGCAGCACG
1 CGGAGTTCATCCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGCCAGCACG
* * * *
178079 GAGAGGGGAACCCGGCCGATCCCCAACTTGCGCATCCCGACCGTCTGGCCGGCTGAGCGCCCGCA
66 CAGAGGGGAACCCGACCGATCCCCAACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCACCCGCA
* *
178144 CGCTCATTTCGTGGGTTGACT-TAGGCATACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCA
131 CGCTCATTTCATGGGTTGA-TGTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCA
* ** *
178208 TTCCCACTCTAAGATCAGACCAGACCGAGGGTTGTGGT-AGCACATGCTAGGCTCGGGCATGTGT
195 TT-CCACTCTAAGATCAGACCAGACCGAAGGTTG-CCTCAGCACATGCTAGGCTCGGGCATGTGC
* * * * ***
178272 TGGTGCCGCATTTTTCCTCGTCGGGGCACCATCGTC-GAACGTCGCCGGAGAACCTAACCGGTGG
258 TGGCGCCGCATTTTTCCTCATCGGGGCACCATCGCCGGAACATCGCCGGAGAACCTAACCAACGG
* * * *
178336 CATTGGGGTTCCGACGAT-CGAGGGGGTTGGGGGGGTGTGCGCACATGATGTTTGATTGGTGCTG
323 CATTGGGGTTCCGACGATCCG-GGGGGTCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
178400 GT
387 GT
178402 GCTTGGCCCT
Statistics
Matches: 333, Mismatches: 51, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
435 2 0.01
436 247 0.74
437 83 0.25
438 1 0.00
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (436 bp):
CGGAGTTCATCCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGACAGCAGGATCGCCAGCACG
CAGAGGGGAACCCGACCGATCCCCAACTTGCGCATCCCGACCCTCTGGCCGGCTGAGCACCCGCA
CGCTCATTTCATGGGTTGATGTAGGCATACGGAGTTCATTCACAGTCTAAGCATACGGAGTTCAT
TCCACTCTAAGATCAGACCAGACCGAAGGTTGCCTCAGCACATGCTAGGCTCGGGCATGTGCTGG
CGCCGCATTTTTCCTCATCGGGGCACCATCGCCGGAACATCGCCGGAGAACCTAACCAACGGCAT
TGGGGTTCCGACGATCCGGGGGGTCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTAT
GTGCTCGCCCGTCCGCCCTCTTGTTTTGTCTGTTGGCTTAAACATA
Found at i:179977 original size:26 final size:26
Alignment explanation
Indices: 179932--179982 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
179922 TTGACTTAGG
*
179932 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGCCTAAC
*
179958 CATATGGAGTTCAATT-CCAGCCTAA
1 CATACGGAGTTC-ATTCCCAGCCTAA
179983 GATCGGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGCCTAAC
Found at i:180847 original size:892 final size:895
Alignment explanation
Indices: 177974--186993 Score: 6798
Period size: 890 Copynumber: 9.9 Consensus size: 895
177964 GTATGTGCTC
* * * * * ** *
177974 GCCCGTCCGCCCTCTTGTTTTGTCTGTTGGCTTAAACATACGGAGTTCATCCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
178039 AGACTGGACTGAGTGTTG-TGACAGCAGGATCGGCAGCACGGAGAGGGGAACCCGGCCGATCCCC
66 AGAATGAACTGAGGGTTGCAG-CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
** * * * *
178103 AACTTGCGCATCCCGACCGTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
130 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** *
178168 GCATACGGAGTTCATTCATAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGAC
195 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * * *
178233 CGAGGGTTGTGGTAGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTCCTCGTCGGGG
260 CGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-C--TTTTCTTCGTCGGGG
* * * ** *
178298 CACCATCGTC-GAACGTCGCCGGAGAACCTAACCGGTGGCATTGGGGTTCCGACGA-TCGAGGGG
321 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTCG-GGGG
** ** * *
178361 GTTGGGGGGGTGTGCGCACATGATGTTTGATTGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCT
385 G-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* ** * * *
178426 ATACCTCATCAAACCTTAAGAACTCACACCCCTTTAAAGAGCAATTGAGATTTTATAGGTTTGCT
449 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
178491 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
514 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
178556 CTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAG
579 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * * *
178621 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAGAATCTCGGACCGCTAAAA-TTTTGAAAAT
644 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAAT
* * * *
178685 CTTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTCCATGTGAAGGCTTAAGGGACCATTGT
709 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
178750 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
774 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
178815 TACCACCCTATCGATCTATGGCTTGCGCATCCTGTCTCTCTGGTCGGCGTAGTGCCC
839 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA
* * * * **
178872 GCCCGCCCG-CCGGTCGTTTCGTTGGTTGGCCTAGGCATACAGAGTTCATTCATAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * ** * * *
178936 AG-ATCGGA-TCGAGGGTTACGGTGGTAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCC
66 AGAAT-GAACT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
* * * ** *
178999 CGGCTTGTGTATCCCGCCCCTCTGGCC-AGCTGAGCACCCGCACGCTCGTTTTATGGTTTGACTT
129 CGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
179063 AGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C--AGAT--------
193 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
** * * *
179104 --CGAGGGTTGTC-CTAGCACATGCTGGGCTCAGGCATGTGCTGGTCCCGTATTTTTCTTTGTCG
258 ACCGAGGGTTG-CGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC----TTTTCTTCGTCG
* * * * * *
179166 GGGCACCATCATCGGAGCATCGCCGGAGAACCTGACCGACGGCCCTT-GGGTTCAGGC-AAT---
318 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGAC-GACATTGGGGTTCCGACGATTCGG
*
179226 -----CGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
382 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
179286 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTGAGAATTTTACA-GTT
447 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAG-ATTTTACAGGTT
*
179350 T-CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
510 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* ** * * *
179414 TACACTTCGAGTTTTTGGCTGAA-TTTTTTGTGCATGTGAACAAATATACAAGGATCACTTCTAC
575 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
* * * *
179478 CAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTGGA
640 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGA
* *
179543 AAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
705 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
179608 TTGTGTGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
770 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
** * * * *
179673 CACCTACCACCCTATCGATCCATAGCTTGCGCATCCCATCTTTCTGGCTGGCGTAGCGCCCA
835 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCA
* * *
179735 -CCCGCCTGTCCGCCCGCTTGTTTCGTCAGTAGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 GCCCG-C---CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * **
179799 GATCAGACT-AGACCGAAGGCTGTGGCAGTAGGATCGACAGCACGCAGAGAGGGACCCGGTCGAT
62 GATCAGAATGA-ACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * * * *
179863 CCCTTGG-TTGCGCATCTCGCCCCTC-GGCCGACTGAGCGCCCGCAAGCTCGTTCCATGTGTTGA
126 CCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
* * * *
179926 CTTAGGCATACGGAGTTCATTCCCAGTCTAACCATATGGAGTTCAATT-CCAGCCTAAGATCGGA
190 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC-ATTCCCAGTCTAAGATCAGA
* **
179990 CCAGACCGAGGGTTGCGGAAGCACATACTGGGCTCGACCATGTGCTGGTG-C-TTTCTTCGTCGG
254 CCAGACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTTTTCTTCGTCGG
** * * * *
180053 GGCACCATCACCGGAGCATCGTCGGAGAACCGGACCGACGATATTGGGGTTCCGACGATTGGGGG
319 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTCGGGG
* * *
180118 GGCCTGGGGGTGTGCGCACATGATGTGCGCTGGG-GCTGGTACTTGGCCCTTATGTTGGCCCCCT
384 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
180182 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
449 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * *
180247 ACCAGTAGCCACTAAAGTGTCTAAAATGGGGACACTTTATTCAAATGGTCA-AAAACCCTTGTAC
514 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA-TCTTGTAC
* * **
180311 ACTCCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTAAAAA
578 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * *
180376 GTTTGGGGCCAAAAGACCTTCCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCCAAAA
643 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAA
* * *
180441 TCGTGAAAAATAGAAAACGGGTCTTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
708 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * * *
180506 TATGAATTTAGAAGCCAAAAAAATGGAATTTGCACGTAGAAATATAAATGATGTGCCTAAACCCA
773 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA-GATGTGCCTAAACCCA
* * *
180571 CCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCTA
837 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA
* * *
180630 GCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCCTAGGTATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * *
180695 AGAATGAACTGAGGGTTGCAGTAGCAATACCAGCAGCACGCAAAGGGGGACCCGACCGAT-CCCG
66 AGAATGAACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * * *
180759 ACTTACGTATCCTGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAAG
131 GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
180824 CATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACC
196 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
** *
180889 GAGGGTTGCGGCCGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGACGGGGC
261 GAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-C--TTTTCTTCGTCGGGGC
* *
180954 ACCATCGTCGGAGCATCGTC-GAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TC-----G-
322 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTCGGGGGGC
181011 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
387 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
181075 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCC
452 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
181140 AGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
517 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
181205 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
582 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * *
181270 GGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAATAGTTTCAAAAATCAT
647 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCAT
* *
181335 GAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATG
712 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *** *
181400 AATGTACAAGCCA-AAAGAATGGCTTTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCTA
777 AATTTACAAGCCATAAA-AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * *
181464 CCACCCTATCGATCCACAGCTTGCGCAACCTGTCTCTCTGGTCGACGCT-GT----
841 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG-TAGTGCCA
* *
181515 ----GCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * ** *
181576 -GGATCGAATTGAGGGTTACCGTAGTAGGATCGGCAGCACATAGAGGGGGACCCGGCCGATCCCC
66 AGAAT-GAACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * *
181640 GGCTTGTGCATCCCGCCCCTC-GGCCGA-TGAGTGCCCGCACGCTTC-TTCCGTAGGTTGACTTG
130 GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTA
* * * *
181702 GGCATACGAAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGA
194 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * *
181767 CCGCGGGTTAC-GATAGCACATGCTCGGCTAGGGCATGTGCTAGTGCTGCTTTTTTCTTTGTCGA
259 CCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGCT-G-G-TGC-CTTTTCTTCGTCGG
* * * * * *
181831 GCCACCATCGCCGGAGCAT-GCCGGAGAACCTGATCGACGGCATTGGGGTTCTGGCGA-TCGAGG
319 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTCG-GG
* * *
181894 GGGCCGGGGTGGGTGTGTGCACATGTTGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGCCC
383 GGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
181959 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTT
446 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* ** **
182024 GCTGCCTGTAGCTTTTAAAGTGTCTGAAATGGGGACACTTTTTTTGAATGGTCACAAAATCTTGT
511 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * * *
182089 AAACTTCGAGTTTTTAGCTGAATTTTTTTTTACGTGCCAACAAAAATACAAGGATCATGTCTTCC
576 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* ** * * *
182154 AAGTTTGAGGCCAAAACTTATTCC-AAAAAAGTTTTAAAAAATCTCAAACCGCAAAGAGTTTCGA
641 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGA
* *
182218 AAATCATGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCA
705 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
182283 TTGTATGAATTTACAAGCCATAAAAATGGCAATGGCAAGCAGAAATATAAAGATGTGCCTAAACC
770 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACC
* * *
182348 CACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGC-T-GAG-CA
835 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA
** *** ** * * * ** * * ***
182406 -CCCGAAAC-TTAGAAAACGAGTT-GTC--TTGCCATGAAACTTCACGTGAATGCTTAAGGGACC
1 GCCCG-CCCGCCCG--CTCG-TTTCGTCGGTTGGC-TTAGGCAT-ACG-G-A-G-TTCA-TTCCC
* ** * * * ** * ** *
182466 ATTGTATGAATTTACAAGCCATAAAAATG-GCATTGGCATGCAGAAATATGAAGATGTCCCCA-A
55 A--GTCT-AAGAT-C-AG-AAT-GAACTGAGGGTT-GCA-GCAG---CA-G--GA--TCGGCAGC
* ****** * * * * * * * *
182529 ACCCA-CCTACCACCCTATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
103 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC-T-GAG--C
* * * * * *
182593 GCCCGCCCGCTCGCTTGTTTTGTCGCTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT
164 GCCCGCACGCT--C--GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA-
* * * * * **
182657 TGGAC-CAGACTGAGGGTT-GCAGTAGC-AGGATC-GA-CAGGA-CGCAGAGG--G-GGACCCGA
224 T--ACGGAG-TTCA---TTCCCAGT--CTAAGATCAGACCA-GACCG-AG-GGTTGCGGAAGC-A
* * * * ** ** *
182713 CCGATCCCT-GGCTTGCGCA--T-CTCGCCCCTCTGGC--CGACTGAGCGGCCACACGCTCATTT
277 -C-AT-GCTGGGCTCGGGCATGTGCTGGTGCCT-TTTCTTCGTC-G-G-GG---CA--C-CA--T
* * * * * * ** * *
182772 CATGGGTTGACTTAGGCATACGGAG-TCCTTTCTCGATCTAAGCATATGGAGTTCATTCCCAGTC
327 CGTCGG-AG-CAT-CGC---CGGAGAACCTGAC-CGA-C-GA-CAT-TGG-G---GTT-CC-G--
* *** * * * * * * * *
182836 TAAGA-TCAGACCAGACTGAGGGTTGTGCAGCACATGTTGGGCTCA-GGCATGTGCTGGTGC-T-
373 -ACGATTC-G-GGGGGCCGGGGGGTGTGC-GCACATGATGTGC-GATGG---GTGCTGGTACTTG
** * * * * * * * * * *
182897 GCATTTTTTTTCGTCGGGGCACC-AT-CGTCGGAGC-ATCGTCGGAGAACCTGAC-CCGCGGCAT
430 GC-CCTTATAT--T--GGCCCCCTATCCCTC--ATCAAACCTC-GAGAA-CTCACACC-C--CCT
*** * ** * ******** * * * ****
182958 TGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGTACTT
483 TAAAG----AGC-ATTTGAGATTTTACAGGTTTGCTGC-CA-G-T-AGCCATTAAAG-TGT-C-T
* * ** * * **** ** *
183022 GGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
536 -G-----AAATGGGGACACT-T---TTTTCAAA--T-G-G---TCACAAAATCTTGTACA-C-TT
* * ** ** ** * **** * ** * *
183087 TGAGATTTTA-C--AGGTTTGCT-ACCAGTAACCATTAAAGTGTCTAAAATGGGGA-CATTTTTT
582 CGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCA--AAA-AAAATACAA---GGATCACGTCTA
* * * * **** ** *** ******** *
183147 TCAA--AT-GGTCACAAAA-TCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGC---ATG
639 CCAAGTTTGGGGC-CAAAACTCCT-T-C-CGAAAAAATTTTA-AAAAATCCCGAACCGCAAAAAG
*** * * ** * *** * * * ** ** **
183205 CCCACAAAAATACAAGAATCACATCTACCAAGT-TTGGTGCCA--AAACTCCTTC-CGAACAAAT
699 -TTTCGAAAAT-CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA---CTTCACG-TGAAGG
* *** ** ** * ** ** **
183266 TTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
758 CTTAAGGGA--CC--ATTGTATGAA--TTTACAAGCCAT-AAAAAT-GGCATTG-G-CA---TG-
* * * * ** ** *** * ** *
183331 CATGAAACT-TGACG-TGAAGGCTTAAGGGA-CCATTGTATGAATTTATAAGCCATAAAAATGGC
809 TA-GAAA-TATGAAGATG--TGCCTAA---ACCCA-CCTACCACCCTAT---CGAT--CCACGGC
*** *** * ** ***
183393 ATTGC-CATGTAG-AAATATGAAGATGTG-GATAAACCCA
861 -TTGCGCATCCCGTCTCTCTG--GCCG-GCG-TAGTGCCA
* * ** ** * *** * *
183430 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
1 GC--CC-GCC---CG--CC-C-GC-T-CG--TTTCGTCGGT-T-G--G-CTTAG-G-CATACGGA
* * *** ** * * * ** * *
183495 CTGCCCGCCC-GCTCGTTTCG-TC-GGATG-GCTTAGGCATACAG-AGTTCA--TTC--CTAGTC
45 GTTCATTCCCAG-TC--TAAGATCAGAATGAACTGAGGGTTGCAGCAG--CAGGATCGGC-AG-C
*
183551 TAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGGACGCAGAGGGGGACCCGGCCG
103 -ACG--CAG---------A-------GG--G--GGA----C----C-C-------GA-----CCG
* ** * * *
183616 ATCCTCAACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTGGTTTCGTGGGTTG
124 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * *
183681 ACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCCTTCCCAGTCTAAGATCAAA
189 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * *
183746 TCGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTC
254 CCAGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGCTGGTG-C---CTTTTCTTC
* * ** * * * * *
183810 GTCGGGGCACCATCGCCGAAAAATCACCGGATAACTTGACCGGCGACATTAGGGATT-CGACGA-
314 GTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGGTTCCGACGAT
* *
183873 TCGGGGGGCCGGGGGGGCTGTGGGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATT
378 TCGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
183938 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACA
441 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
184003 GGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
506 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
184068 CCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
571 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGT
* * * * *
184133 CTACCAAGTTTGGGGCAAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCAAACCACAAAATA-T
636 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA-AGT
*
184197 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
700 TTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
** *
184262 GACCATTGTATGAATTTACAAGCTGTAAAAATGGCGTTGGCATGTAGAAATATGAAGATGTGCCT
765 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
* ** * *
184327 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCTTGTCTCTCTGGCCGACG-CG-G--
830 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
184388 A
895 A
184389 GCCCGCCCG---G-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
184450 AGACCA-G-ACTGAGGGTTGCAACAACAGGATCGGTAGCATGCAGAGGGTGACCCAATCGATCCC
66 AGA--ATGAACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
* * *
184513 CGGCTTGTGCATCCCGCCCCTTTGGCC-AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
129 CGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * * *
184577 AGGCATACGGAGTTCACTCCCAGTCTAAGCCTACGGAGCTCATTCCCAGTCTCAGATCGGACTAG
193 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * *
184642 ACCGAGGGTTGTGGCAGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTATCTTCGTCGG
258 ACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-C-TTT-TCTTCGTCGG
** * * *
184707 GGCACCATCGTCGGAGCATCTTCGGACAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGG
319 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTCGGGG
* *
184771 GGCCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCC
384 GGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
184836 CTATCCCTCATTAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
447 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
184901 CTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTG
512 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
184966 CACTTCAATTTTTTAGCTGAATTTTTTTGTGCACGCCCAAAAAAATACAAGGATCACGTCTACCA
577 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * **
185031 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAA
642 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCGAA
* * *
185096 AATCATGAAAAATAGAAAACAAGTCGTCCTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCAT
706 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* **
185161 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGGATAAACCC
771 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
* *
185226 ACCTACCACCCTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
836 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA
* * *
185286 GCCCGCCTAGCCGCCCGCTAGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAA
1 GCCCG-C---CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
185351 GATCAGACCGGACCGAGGGTTG-AGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAAT
62 GATCAGAATGAACTGAGGGTTGCA-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT
* * * *
185415 CCCCGACTTGCGCATCCCGCCCCTCTGGCCAACTGAGCTCCCGCACGCTAGTTTCGTGGGTTGAC
126 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
185480 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCCTTCCCAGTCTAAGATCATACC
191 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
185545 AGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCCTTTTTCTTCGT
256 AGACCGAGGGTTGCGGA-AGCACATGCTGGGCTCGGGCATGTGCTGGT---GCC-TTTTCTTCGT
* * ** * * * *
185609 CGGGGCACCATCGCCGAAAAATCACCGGATAACTTGACCGGCGACATTGGGGATT-CGACGA-TC
316 CGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGG-TTCCGACGATTC
* *
185672 GGGGGGCCGGGGGGGCTGTGGGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
380 GGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
185737 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGG
443 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
185802 TTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
508 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* *
185867 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
573 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
** ** * ** *
185932 ACCAAGTTTGGGGTGAAAACTCCCGCCGAAAAAATTTTAAAAAATCCCAAACTACAAAATGTTTC
638 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTC
* *
185997 -AGAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGA
703 GA-AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** * *
186061 CCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCT-A
767 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* * ** *
186125 ACCCACCTACCACCCTATCGATCCACGGCTTACACATCTTGTCTCTCTGGCCGACGTAGT----
832 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA
* * *
186185 GCCCGCCTG---G-TCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGACTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * **
186246 AGACCA-G-ACCGAGGGTTGCGGCAACAGGATTGGTAGCACACAGATGGGGACCCGGTCGATCCC
66 AGA--ATGAACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
* * * *
186309 CGGCTTGCGCATCCCACCCCTTTGGCC-AGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTT
129 CGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * **
186373 AGGCATACGGAGTTCATTCCCGGTCTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCGGACTGG
193 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * *
186438 ACCGAGGGTTGTGGCAGCAAATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTATGTTCGTCGG
258 ACCGAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC---TTT-TCTTCGTCGG
* * *
186503 GGCACCA---TC---G--T---CGGAGAACCTGACCGGCGACATTGGGGTTCTGGA-GA-TCAAG
319 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTC-CGACGATTC-GG
* * *
186555 GGGGCCAGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCC
382 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
186620 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
447 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
186685 CTGCCGGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
512 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * * *
186750 GACTTTGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATA-AGTGGATCACGTCTATC
577 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA-AGGATCACGTCTACC
* * * *
186814 AAGTTTGGGACCAAAAATCCTTCCGAAAAAGTTTTAAAAAATCCCGAACCGCAAAACA-TTTGGA
641 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA-AGTTTCGA
* *
186878 AAATCGTGAAAAATAGAAAACG-GTTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
705 AAATCATGAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
***
186942 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCATAGAAATATGAA
769 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
186994 TTTACCCGCC
Statistics
Matches: 6413, Mismatches: 1220, Indels: 997
0.74 0.14 0.12
Matches are distributed among these distances:
861 86 0.01
862 362 0.06
863 12 0.00
864 7 0.00
866 64 0.01
867 110 0.02
868 3 0.00
869 2 0.00
870 2 0.00
871 62 0.01
872 30 0.00
873 4 0.00
874 1 0.00
877 1 0.00
878 2 0.00
879 389 0.06
880 218 0.03
881 120 0.02
882 25 0.00
883 4 0.00
885 3 0.00
886 57 0.01
887 2 0.00
888 6 0.00
889 101 0.02
890 805 0.13
891 298 0.05
892 752 0.12
893 215 0.03
894 154 0.02
895 238 0.04
896 79 0.01
897 205 0.03
898 44 0.01
899 6 0.00
900 3 0.00
901 6 0.00
903 59 0.01
904 148 0.02
905 575 0.09
906 7 0.00
907 5 0.00
908 8 0.00
909 4 0.00
912 2 0.00
913 3 0.00
915 31 0.00
916 8 0.00
917 6 0.00
918 1 0.00
919 2 0.00
920 1 0.00
921 9 0.00
922 3 0.00
923 2 0.00
924 5 0.00
925 39 0.01
926 2 0.00
927 7 0.00
928 9 0.00
929 10 0.00
930 19 0.00
931 5 0.00
932 2 0.00
933 9 0.00
934 14 0.00
935 15 0.00
936 9 0.00
937 5 0.00
939 4 0.00
940 9 0.00
941 7 0.00
943 5 0.00
944 4 0.00
945 1 0.00
946 1 0.00
948 2 0.00
949 1 0.00
950 1 0.00
952 6 0.00
953 22 0.00
954 7 0.00
955 5 0.00
956 10 0.00
957 6 0.00
958 6 0.00
959 16 0.00
960 5 0.00
962 4 0.00
964 6 0.00
965 9 0.00
966 7 0.00
967 13 0.00
968 1 0.00
969 1 0.00
970 11 0.00
971 6 0.00
972 1 0.00
973 7 0.00
974 9 0.00
975 3 0.00
976 2 0.00
979 10 0.00
980 2 0.00
981 2 0.00
982 6 0.00
983 12 0.00
985 7 0.00
986 1 0.00
987 3 0.00
988 8 0.00
989 43 0.01
990 28 0.00
991 13 0.00
992 42 0.01
993 14 0.00
994 27 0.00
995 44 0.01
996 12 0.00
997 3 0.00
998 1 0.00
999 7 0.00
1001 16 0.00
1002 6 0.00
1003 4 0.00
1004 2 0.00
1005 10 0.00
1008 1 0.00
1009 4 0.00
1010 8 0.00
1011 7 0.00
1012 1 0.00
1013 6 0.00
1014 12 0.00
1015 1 0.00
1016 1 0.00
1017 14 0.00
1018 7 0.00
1019 9 0.00
1020 7 0.00
1021 3 0.00
1022 5 0.00
1023 2 0.00
1024 7 0.00
1025 17 0.00
1026 6 0.00
1027 6 0.00
1028 10 0.00
1029 7 0.00
1030 7 0.00
1031 20 0.00
1032 11 0.00
1033 2 0.00
1034 1 0.00
1035 4 0.00
1036 4 0.00
1037 5 0.00
1038 3 0.00
1039 5 0.00
1040 2 0.00
1041 3 0.00
1042 5 0.00
1043 3 0.00
1044 3 0.00
1045 7 0.00
1046 4 0.00
1048 1 0.00
1049 1 0.00
1050 1 0.00
1051 3 0.00
1053 5 0.00
1054 21 0.00
1055 11 0.00
1056 10 0.00
1057 7 0.00
1058 3 0.00
1059 43 0.01
1060 4 0.00
1061 2 0.00
1062 4 0.00
1063 10 0.00
1065 2 0.00
1066 1 0.00
1067 31 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGAATGAACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
GAGGGTTGCGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCTTTTCTTCGTCGGGGCACCA
TCGTCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTCGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA
Found at i:180860 original size:26 final size:26
Alignment explanation
Indices: 180820--180875 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
180810 TGGGTTGACT
*
180820 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
180846 TAAGCATACGAAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
180872 TAAG
1 TAAG
180876 ATCAGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:182540 original size:184 final size:184
Alignment explanation
Indices: 182231--182583 Score: 609
Period size: 184 Copynumber: 1.9 Consensus size: 184
182221 TCATGAAAAA
*
182231 TAGAAAACGAGTAGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
182296 CAAGCCATAAAAATGGCAATGGCAAGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCAATGGCAAGCAGAAATATAAAGATGTCCCCAAACCCACCTACCACCCT
182361 ATC-AATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCACCCGAAACT
131 ATCGAA-CCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCACCCGAAACT
* *
182415 TAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
182480 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCCAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCAATGGCAAGCAGAAATATAAAGATGTCCCCAAACCCACCTACCACCCT
*
182545 ATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
131 ATCGAACCACGGCTTGCGCATCCCGTCCCTCTGGCCGGC
182584 GTAGTGCCCG
Statistics
Matches: 159, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
184 157 0.99
185 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (184 bp):
TAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCAATGGCAAGCAGAAATATAAAGATGTCCCCAAACCCACCTACCACCCT
ATCGAACCACGGCTTGCGCATCCCGTCCCTCTGGCCGGCTGAGCACCCGAAACT
Found at i:183716 original size:26 final size:26
Alignment explanation
Indices: 183687--183739 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
183677 GTTGACTTAG
*
183687 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
* *
183713 GCATACGAAGTTCCTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
183739 G
1 G
183740 ATCAAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:184172 original size:904 final size:903
Alignment explanation
Indices: 182415--192343 Score: 12253
Period size: 892 Copynumber: 11.2 Consensus size: 903
182405 ACCCGAAACT
* *
182415 TAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
182480 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCCAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
182545 ATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCTCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * * ** * *
182606 CTTGTTTTGTCGCTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAG
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * * *
182671 GGTTGCAGTAGCAGGATCGACAGGACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCTC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * * * *
182736 GCCCCTCTGGCCGACTGAGCGGCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTCCT
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
182801 TTCTC-GATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTG-C
391 TTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* * * * *
182864 AGCACATGTTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGTCGGA
455 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
** * *
182929 GCATCGTCGGAGAACCTGACCCGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGC
520 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGC
*
182993 GCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACC
585 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
183057 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATTAA
650 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
183122 AGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGC
715 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
183187 TGAATTTTTTTGTGCATGCCCACAAAAATACAAGAATCACATCTACCAAGTTTGGTGCCAAAACT
780 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * *
183252 CCTTCCGAACAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAA
845 CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* *
183311 TAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * **
183376 TAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGGATAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
183441 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* *
183506 CTCGTTTCGTCGGATGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAG
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * **
183571 GGTTGCGGCAGCAGGATTGGCAGGACGCAGAGGGGGACCCGGCCGATCCTCAACTTGCGCATCCC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* *
183636 GCCCCTCTGGCCGGCTGAGCGCCCGTACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * *
183701 TTCCCAGCCTAAGCATACGAAGTTCCTTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGACA
391 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* ** * *
183766 GCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGCCGAAA
456 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* * * * *
183831 AATCACCGGATAACTTGACCGGCGACATTAGGGATT-CGACGATCGGGGGGCCGGGGGGGCTGTG
521 CATCACCGGAGAACCTGACCGGCGGCATT-GGGGTTCCGACGATCGGGGGGCCGGGGGGG-TGTG
* *
183895 GGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
584 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
183960 CTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTA
649 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
184025 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAG
714 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
184090 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAA
779 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
184155 TCCTTTCGAAAAAATTTTAAAAAATCCCAAACCACAAAATA-TTTCAAAAATCATGAAAAA
844 TCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA-AGTTTCAAAAATCATGAAAAA
184215 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * *
184280 CAAGCTGTAAAAATGGCGTTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** *
184345 ATCGATCCACGGCTTACGCATCTTGTCTCTCTGGCCGAC-----G--CG---G--AGCCCGCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * * *
184398 GTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
** * * * * * * *
184463 GGTTGCAACAACAGGATCGGTAGCATGCAGAGGGTGACCCAATCGATCCCCGGCTTGTGCATCCC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
184528 GCCCCTTTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * * *
184593 CTCCCAGTCTAAGCCTACGGAGCTCATTCCCAGTCTCAGATCGGACTAGACCGAGGGTTGTGGCA
391 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* * *
184658 GCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTATCTTCGTCGGGGCACCATCGTCGGAG
456 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
** *
184723 CATCTTCGGACAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGC
521 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGGGGTGTGC
* * *
184788 GCACATGATGTGCAATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACC
585 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
184853 TCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
650 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
184918 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCAATTTTTTAGC
715 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
184983 TGAATTTTTTTGTGCACGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
780 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
** * *
185048 CCTTCCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAA
845 CCTTCCGAAAAAATTTT-AAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* * *
185108 TAGAAAACAAGTCGTCCTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * **
185173 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGGATAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
185238 ATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTAG-CCGCCC
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCT-GCCCGCCC
* * * *
185302 GCTAGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGA
195 GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * *
185367 GGGTTGAGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCC
260 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
** * *
185432 CGCCCCTCTGGCCAACTGAGCTCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
325 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
185497 ATTCCCAGTCTAAGCATACAGAGTTCCTTCCCAGTCTAAGATCATACCAGACCGAGGGTTGCGAC
390 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAC
* *
185562 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCCTTTTTCTTCGTCGGGGCACCATCGCCGAA
455 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
** * * *
185627 AAATCACCGGATAACTTGACCGGCGACATTGGGGATT-CGACGATCGGGGGGCCGGGGGGGCTGT
520 GCATCACCGGAGAACCTGACCGGCGGCATTGGGG-TTCCGACGATCGGGGGGCCGGGGGGG-TGT
* *
185691 GGGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
583 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
185756 CCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
648 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
185821 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
713 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* **
185886 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAA
778 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
** ** * *
185951 CTCCCGCCGAAAAAATTTTAAAAAATCCCAAACTACAAAATGTTTCAGAAATCATGAAAAA
843 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* *
186012 TACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * *
186077 CAAGCTGTAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCT-AACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * **
186141 ATCGATCCACGGCTTACACATCTTGTCTCTCTGGCCGACGTAGT----GCCCGCCT----G---G
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * * *
186195 -TCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAG
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * * **
186259 GGTTGCGGCAACAGGATTGGTAGCACACAGATGGGGACCCGGTCGATCCCCGGCTTGCGCATCCC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * *
186324 ACCCCTTTGGCCAGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * ** * *
186389 TTCCCGGTCTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCA
391 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* * * * *
186454 GCAAATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTATGTTCGTCGGGGCACCAT---C---G
456 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* * * *
186513 --T---CGGAGAACCTGACCGGCGACATTGGGGTTCTGGA-GATCAAGGGGGCC-AGGGGGTGTG
521 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC-CGACGATC-GGGGGGCCGGGGGGGTGTG
* *
186571 CGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAAC
584 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
186636 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTA
649 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
186701 AAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAGACTTTGAGTTTTTAG
714 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * *
186766 CTGAACTTTTTTGTGCATGCCAACAAAAATA-AGTGGATCACGTCTATCAAGTTTGGGACCAAAA
779 CTGAATTTTTTTGTGCATGCCAAAAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** *
186830 ATCCTTCCGAAAAAGTTTTAAAAAATCCCGAACCGCAAAACA-TTTGGAAAATCGTGAAAAA
843 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA-AGTTTCAAAAATCATGAAAAA
*
186891 TAGAAAACG-GTTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
1 TAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* **
186955 ACAAGCCATAAAAATGGCATTGGC--GCATAGAAATATG-A-AT-T---T--ACCCGCCCGCC-C
65 ACAAGCCATAAAAATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* ** * * * * ** * * *** **
187009 GCC---CG---CTCGTTTTGTCG-GT--TGGCT-T-AGGCATACGGAGTTCATTCCCAGTCC-AA
128 -CCTATCGATCCACGGCTTG-CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC-G-CCTGC
** *** ** * * * ** * ***
187062 CATCAAAC-CGAATCG--AG--GG-TTACG-ATAGCAG-GATCGA-TAGCA-T-GAAGAGGGGGA
189 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA-CAGAGTTC-ATTCCCAGTCTAAGA-TCAGA
* * ** * **
187116 CCCGACCGA----T-C--C--CCGG-TTTGCA-CATC-C-------CACCC--CTC--TGGCCGG
251 CCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA-CGCAGAGGGGGACCCGAC-CGATCCCCGG
* * * ** * *** * ** * ***** *
187158 -TTGAGCA-CCCGCACGCTCGTTTCGTGGGTTGA-CGTAGGCATGCGAAG-TTCATTCCCAGTC-
314 CTTGCGCATCCCGC-C-C-C-TCTGGCCGGCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACT
* *
187218 TAAGCGTACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------C-G----
374 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * *
187257 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCCTCG
439 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* *
187322 GGGCACCAT---C---G--T---CGGAGAACCTGACCGGTGGCATTGGGGTTTCGACGATCGGGG
504 GGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGG
* *
187376 GGGCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCC
568 GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
187441 CTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
633 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * * *
187505 CCGCCAGTAGCTAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAGTCTTATA
698 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
187570 CACTTTGAGTTTTTAGCTGAATTTTTATGTGCGTGCC-AAAAAAATACAAGGATCACGTCTACCA
763 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* ** * * *
187634 AGTTGGGGGCCAAAACTCCCCCCGAAAAACTTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAA
828 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
187699 ATCATGAAAAA
893 ATCATGAAAAA
*
187710 TAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *
187775 CAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCTT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
187840 ATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCAGCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * **
187905 CTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCGGATTGAG
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * ** * * * * * *
187970 TGTGGCGATAGCAGGATGGGCAGCATGCAGAGGGTGACTCGGCCGACCCCCGGCTTGCGCATCCC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * *
188035 ACCCATCTGGCCGGCTGAGTGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * ***
188100 TTCGCAGTCTAAGCATACGGAGTTCTTTACCAGGCTAAGATCAGATTGGACCGAGGGTTGCGACA
391 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* ** *
188165 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGTTACCATCGTCGGAG
456 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
* * * * *
188230 CATCGCCGGAGAACCTGACTGGAGGCATTGGGGTTCCAACGATTGGGGGGCCGGGGAGGGGCTTG
521 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC-GGG-GGGG--TG
*
188295 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAA
582 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
188360 ACCTCGAGAACTCACACCCCCTTGAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
647 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
188425 TAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACGTCGAGTTTTT
712 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
188490 AGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
777 AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * * *
188555 ACTCATTCCGAAAAAAGTTTAAAAAATCCCAAACCACAAAAAGTTTTAAAAATCGTGAAAAA
842 ACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
188617 TAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
188682 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * *
188747 ATTGATCCACGGCTTGCACATCCCGTCTCTTTGGCCG--GTA-T---CG--TGCCCGCCCGCTCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * * * ** **
188804 CTCGTTTTGTAGGTTGGCTTAGGCATATAGAGTTCGTTCCCAGTCTAAGATTGGACAAGACCGAG
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* ** * * * *
188869 GGTTGCGGCAGCATGATCAACAGCACGCACAGGGTGACCCGACCGATCCCCGACTTGTGCATCCC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* *
188934 GCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCA
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * *
188999 TTCCCAGTCTAGGCATATGGAGTTCATTCCTAGTCTCAGATCGGACCAGACCAAGGGTTAC-AGC
391 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-C
* * * ** *
189063 AGCACATGTTGGGCACGGGCATGTGCTGGTGCCGCCTTTTTCTTCGTCGGGGTGCCATCGTCGGA
455 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * * * * * * * *
189128 GCATCGCCGAAGAACGTAACCGACGGCATTGGGGTTCCGACGATCGAAGTGGTCGGGGGGGTGAG
520 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTG
*
189193 CGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
584 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
189258 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTA
649 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
189323 AAGTGTCTGAAATGGGGACAATTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAG
714 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** * *
189388 CTGAATTTTTTTGTGTGTCCCAAAAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAAC
779 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
189453 TCCTTCCAAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAAAATCGTGAAAAA
844 TCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* * *
189513 TAGAAAACGAGTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
189578 CAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
189642 ATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGGCGACGTAGTGCTCGCCCGCCCGCCCGCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * * * ** * * *
189707 CTCATTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCTTAGTCTAAGATCACATCGGACTGAG
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * ** * * *
189772 CGTTGCGGCAGCAGGATCGACAGCATGTAGAACGGGACCCAACCGATCCCCGGTTTGTGCATCCC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * *
189837 GCCCCTTTAGCCGGCTGAGCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCA
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
189902 TTCCCAGGCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCCGAGGGTTACGAC
391 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CCGAGGGTTGCGAC
* * *
189967 AGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGA
455 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * * *
190032 G-A--ACC--AG-A--T---TGGTGGCATTGGGGTTCCGATGATCGGGGGGGCC-AGGGGGTGTG
520 GCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTG
* *
190085 CACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
584 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * * *
190150 CTTGAGAACTCAGACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCTTTA
649 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
190215 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAG
714 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** * * *
190280 CTGAATTTTTTTGTGTGTCCCAAAAAAAATACAAGGATCATGACTACCAAGTTTGGGGCCAAAAC
779 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * ** *
190345 GCCTTCTGAAAAAATGTTAAAAAATCCCAAATTGCAAAAAGTTTCAAAAATCGTGAAAAA
844 TCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
190405 TAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
190470 CAAGCCATAAATATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
190535 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTGCCCGCCCGCCT----GCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * * *
190596 CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAGATCAGACCGGACCGAA
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * * ** *
190661 TGTTACAGCAGCAGGATCGGCAGTACGCAGAGGGGGACTCGTTCGATCCCCGGCTTGCGCATCTC
261 GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * ** **
190726 GCCCTTCTGGTCGTTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCA
326 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
190791 TTCCCAGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGACCAGACCGAGGGTTGCGACA
391 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
* * *
190856 GCACATGGTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGAAG
456 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
** * * *
190921 CATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCC-AGCGATCGAGCGGGCCAGGGGGGGTGG
521 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCG-GGGGGCC-GGGGGGGTGT
* * * *
190985 GCGCACAAGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAA
583 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
191050 CCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
648 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
191115 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTA
713 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
191180 GCTGAATTTTTTTGTGCATACCAAAAAAAATACGAGGATCACGTCTACCATGTTTGGGGCCAAAA
778 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *** * * *
191245 CACCTTCCAAAAAAATTTTAAAAAATCTTGAGCTGCAAAAAGTTTTAAAAATCATGAAAAA
843 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* * * *
191306 TAAAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * * *
191371 GAAGCCATAAAAATGGCATTGGCACGCAGGAATATGAAGATGTGCCTAAACCCACCTACCACGCT
66 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
191436 ATCGATCCACGGCTTGTGCATCCCGTCTCTCCGGCCGGCGTAGAGCCCG--C-CC-GCCCGCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
* * * * * * *
191497 CTCATTTCATCGATTGGCTTAGGCATAC-GAAATTCATTCTCATTCTAAGATCACACCGGACCGA
196 CTCGTTTCGTCGGTTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
* * * * * * * * ** * *
191561 GTGTTGTGGCAGCTGGAGCGACAGCATGTAGAAGAGGG-CTGGGCCGATCCCCAGCTTGCGCATC
260 GGGTTGCGGCAGCAGGATCGGCAGCACGCAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * *
191625 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTTGGTTGACTTAAGCATACGGAGTT
324 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
191690 CATTCCCAGTCTAAG-AT-C-G-G---A---CCAGACT--G---AG----G--C-----TTGTGG
389 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
* *
191729 CAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGG
454 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* ** * * * *
191794 AGCATCATCAAAGAACCTAACTGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTA
519 AGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTG
191859 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
584 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
191924 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
649 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
191989 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
714 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** * *
192054 CTGAATTTTTTTGTGCATGCCACCAAAAATACAA-GATCACATCTACTAAGTTTGGAGG-CAGAA
779 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCA-AA
* * * ** *
192117 A-TCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTGGAAAATCGTGAAAAA
842 ACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
*
192178 TAGAAAACGAGTCGTCTTGCCATGAAACTTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTT
1 TAGAAAACGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
192243 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
65 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * *
192308 TATCGGTCCCCGGCTTGTGCATCCCGCCCCTCTGGC
130 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
192344 TGGCTGAGCA
Statistics
Matches: 7817, Mismatches: 1003, Indels: 449
0.84 0.11 0.05
Matches are distributed among these distances:
818 1 0.00
819 178 0.02
820 234 0.03
821 89 0.01
822 1 0.00
824 1 0.00
825 2 0.00
827 9 0.00
828 1 0.00
830 2 0.00
831 1 0.00
832 2 0.00
833 7 0.00
835 5 0.00
836 6 0.00
837 17 0.00
839 1 0.00
841 2 0.00
842 9 0.00
843 10 0.00
844 15 0.00
845 12 0.00
846 33 0.00
847 14 0.00
848 10 0.00
849 5 0.00
853 3 0.00
854 4 0.00
855 3 0.00
856 3 0.00
857 5 0.00
858 3 0.00
860 1 0.00
862 13 0.00
863 11 0.00
864 17 0.00
865 32 0.00
866 22 0.00
867 17 0.00
868 12 0.00
869 9 0.00
870 2 0.00
871 1 0.00
872 105 0.01
873 359 0.05
874 11 0.00
875 104 0.01
876 2 0.00
877 3 0.00
878 4 0.00
879 384 0.05
880 36 0.00
881 9 0.00
882 1 0.00
883 1 0.00
886 2 0.00
887 1 0.00
888 74 0.01
889 213 0.03
891 352 0.05
892 966 0.12
893 329 0.04
894 5 0.00
895 88 0.01
896 535 0.07
897 7 0.00
898 14 0.00
899 365 0.05
900 234 0.03
901 741 0.09
902 52 0.01
903 305 0.04
904 638 0.08
905 680 0.09
906 124 0.02
907 248 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (903 bp):
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
GGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAG
CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
Found at i:185513 original size:26 final size:26
Alignment explanation
Indices: 185484--185536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
185474 GTTGACTTAG
*
185484 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
185510 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
185536 G
1 G
185537 ATCATACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:185621 original size:905 final size:901
Alignment explanation
Indices: 182415--186993 Score: 6370
Period size: 905 Copynumber: 5.1 Consensus size: 901
182405 ACCCGAAACT
* *
182415 TAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * *
182480 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTCCCCAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
182545 ATCGAACCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-C-CCGCTCGCT
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTCCGC-CGCT
* * * * ** *
182608 TGTTTTGTCGCTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGG
195 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
* * * * *
182673 TTGCA-GTAGCAGGATCGACAGGACGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCTCG
260 TTG-AGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * *
182737 CCCCTCTGGCC-GACTGAGCGGCCACACGCTCA-TTTCATGGGTTGACTTAGGCATACGGAGTCC
324 CCCCTCTGGCCAG-CTGAGCGCCCGCACGCT-AGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
182800 TTTCTC-GATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTG-
387 ATTCCCAG-TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGA
* * * *
182863 CAGCACATGTTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTTTTCGTCGGGGCACCATCGTCGG
451 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
* ** * * * *
182928 AGCATCGTCGGAGAACCTGACCCGCGGCATTGGGGTTCCGGCGATCGGGGGGCC--GGGGGGTGT
516 AGAATCACCGGATAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGT
*
182991 GCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAA
581 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
183055 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAACCATT
646 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
183120 AAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTA
711 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTA
* * * *
183185 GCTGAATTTTTTTGTGCATGCCCACAAAAATACAAGAATCACATCTACCAAGTTTGGTGCCAAAA
776 GCTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
183250 CTCCTTCCGAACAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCATGAAAAA
841 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* *
183311 TAGAAAACGAGTCATCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* * **
183376 TAAGCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGGATAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
183441 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCT--CCG-CCG
* * * *
183506 CTCGTTTCGTCGGATGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAG
193 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * **
183571 GGTTGCGGCAGCAGGATTGGCAGGACGCAGAGGGGGACCCGGCCGATCCTCAACTTGCGCATCCC
258 GGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * *
183636 GCCCCTCTGGCCGGCTGAGCGCCCGTACGCTGGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
323 GCCCCTCTGGCCAGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * * * * *
183701 TTCCCAGCCTAAGCATACGAAGTTCCTTCCCAGTCTAAGATCAAATCGGACCGAGGGTTGCGACA
388 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACA
* ** * * *
183766 GCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCACCATCGCCGAAA
453 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * *
183831 AATCACCGGATAACTTGACCGGCGACATTAGGGATT-CGACGATCGGGGGGCCGGGGGGGCTGTG
518 AATCACCGGATAACCTGACCGGCGACATT-GGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTG
* *
183895 GGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
582 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
183960 CTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTA
647 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
184025 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAG
712 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAG
* * *
184090 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAA
777 CTGAATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* **
184155 TCCTTTCGAAAAAATTTTAAAAAATCCCAAACCACAAAATA-TTTCAAAAATCATGAAAAA
842 TCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAA-AGTTTCAAAAATCATGAAAAA
184215 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** *
184280 CAAGCTGTAAAAATGGCGTTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * *
184345 ATCGATCCACGGCTTACGCATCTTGTCTCTCTGGCCGACG-CG-G--AGCCCG-C-CCG--G-TC
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTCCGCCGCTC
*
184401 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
196 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * * * *
184466 TGCA-ACAACAGGATCGGTAGCATGCAGAGGGTGACCCAATCGATCCCCGGCTTGTGCATCCCGC
261 TG-AGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * *
184530 CCCTTTGGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCACT
325 CCCTCTGGCCAGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * *
184595 CCCAGTCTAAGCCTACGGAGCTCATTCCCAGTCTCAGATCGGACTAGACCGAGGGTTGTGGCAGC
390 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGC
* * *
184660 AAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTATCTTCGTCGGGGCACCATCGTCGGAGCA
455 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAA
** * *
184725 TCTTCGGACAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGC
520 TCACCGGATAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGC
* * *
184790 ACATGATGTGCAATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTC
585 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
184855 AAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
650 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* ** *
184920 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCAATTTTTTAGCTG
715 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTG
*
184985 AATTTTTTTGTGCACGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
780 AATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
** *
185050 TTCCGAAAAAATTTTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAA
845 TTCCGAAAAAATTTT-AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * *
185108 TAGAAAACAAGTCGTCCTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* **
185173 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTGGATAAACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
185238 ATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTAGCCGCCCG
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCT--CCG-CCG
* * * *
185303 CTAGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAG
193 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * *
185368 GGTTGAGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCCC
258 GGTTGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
185433 GCCCCTCTGGCCAACTGAGCTCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
323 GCCCCTCTGGCCAGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * * *
185498 TTCCCAGTCTAAGCATACAGAGTTCCTTCCCAGTCTAAGATCATACCAGACCGAGGGTTGCGACA
388 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACA
* * * *
185563 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCCTTTTTCTTCGTCGGGGCACCATCGCCGAAA
453 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* *
185628 AATCACCGGATAACTTGACCGGCGACATTGGGGATT-CGACGATCGGGGGGCCGGGGGGGCTGTG
518 AATCACCGGATAACCTGACCGGCGACATTGGGG-TTCCGACGATCGGGGGGCCGGGGGGGGTGTG
* *
185692 GGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
582 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
185757 CTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTA
647 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
185822 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAG
712 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAG
**
185887 CTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAA
777 CTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
** *
185951 CTCCCGCCGAAAAAATTTTAAAAAATCCCAAA-C-TACAAAATGTTTCAGAAATCATGAAAAA
841 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTA-AAAA-GTTTCAAAAATCATGAAAAA
* *
186012 TACAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTA
1 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
** * *
186077 CAAGCTGTAAAAATGGCATTGGCATGAAGAAATATGAAGATGTACCT-AACCCACCTACCACCCT
66 CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * **
186141 ATCGATCCACGGCTTACACATCTTGTCTCTCTGGCCGACGTAGT----GCCCGCCT--G--G-TC
131 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTCCGCCGCTC
* *
186197 GTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGACTAAGATCAGACCAGACCGAGGGT
196 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
* * * * * * ** *
186262 TGCGGCAACAGGATTGGTAGCACACAGATGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACC
261 TGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* * *
186327 CCTTTGGCCAGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
326 CCTCTGGCCAGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * ** *
186392 CCGGTCTAAGCCTACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCA
391 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCA
* * * * *
186457 AATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTATGTTCGTCGGGGCACCATCGTC-G-G---
456 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAAT
* * *
186517 -A---G--AACCTGACCGGCGACATTGGGGTTCTGGA-GATCAAGGGGGCC--AGGGGGTGTGCG
521 CACCGGATAACCTGACCGGCGACATTGGGGTTC-CGACGATC-GGGGGGCCGGGGGGGGTGTGCG
* *
186573 CAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCT
584 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
186638 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCGGTAGCCATTAAA
649 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
*
186703 GTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAG-ACTTTGAGTTTTTAGC
714 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-GCACTTTGAGTTTTTAGC
* * * *
186767 TGAACTTTTTTGTGCATG-CCAACAAAAATA-AGTGGATCACGTCTATCAAGTTTGGGACCAAAA
778 TGAATTTTTTTGTGCATGCCCAA-AAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * ** *
186830 ATCCTTCCGAAAAAGTTTTAAAAAATCCCGAACCGCAAAACA-TTTGGAAAATCGTGAAAAA
841 CTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAA-AGTTTCAAAAATCATGAAAAA
*
186891 TAGAAAACG-GTTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
1 TAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
***
186955 ACAAGCCATAAAAATGGCATTGGCGCATAGAAATATGAA
65 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
186994 TTTACCCGCC
Statistics
Matches: 3264, Mismatches: 374, Indels: 107
0.87 0.10 0.03
Matches are distributed among these distances:
878 2 0.00
879 383 0.12
880 29 0.01
881 11 0.00
882 1 0.00
885 1 0.00
891 284 0.09
892 586 0.18
893 192 0.06
894 1 0.00
895 2 0.00
896 173 0.05
897 6 0.00
898 1 0.00
899 9 0.00
900 225 0.07
901 100 0.03
902 8 0.00
903 92 0.03
904 564 0.17
905 592 0.18
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTCCGCCGCTC
GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
TGAGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
CCTCTGGCCAGCTGAGCGCCCGCACGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCA
CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGAAT
CACCGGATAACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGGTGTGCGCA
CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTTGAGTTTTTAGCTGA
ATTTTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
TCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
Found at i:186408 original size:26 final size:26
Alignment explanation
Indices: 186378--186427 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
186368 GACTTAGGCA
*
186378 TACGGAGTTCATTCCCGGTCTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
186404 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
186428 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:188137 original size:26 final size:26
Alignment explanation
Indices: 188086--188138 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
188076 GTTGACTTAG
*
188086 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCGCAGGCTAA
*
188112 GCATACGGAGTTCTTTAC-CAGGCTAA
1 GCATACGGAGTTCATT-CGCAGGCTAA
188138 G
1 G
188139 ATCAGATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCGCAGGCTAA
Found at i:189020 original size:26 final size:26
Alignment explanation
Indices: 188982--189034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
188972 TTGGTTGACT
188982 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
* *
189008 TAGGCATATGGAGTTCATTCCTAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
189034 T
1 T
189035 CAGATCGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:189917 original size:26 final size:26
Alignment explanation
Indices: 189888--189940 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
189878 GTTGACTTAG
189888 GCATACGGAGTTCATTCCCAGGCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
*
189914 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGGCTAA
189940 G
1 G
189941 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGGCTAA
Found at i:191206 original size:901 final size:900
Alignment explanation
Indices: 186998--192343 Score: 7145
Period size: 901 Copynumber: 6.0 Consensus size: 900
186988 TATGAATTTA
** * *
186998 CCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAC
1 CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * ** * *
187063 ATCAAACCGAATCGAGGGTTACGATAGCAGGATCGATAGCATGAAGAGGGGGACCCGACCGATCC
66 ATCAGACCGGACCGAGTGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC
* * * * * *
187128 CCGGTTTGCACATCCCACCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGACGT
131 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
187193 AGGCATGCGAAGTTCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
196 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * *
187258 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGTATTTTTCTTCCTCGG
261 ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * *
187323 GG---CA---C----CATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTTCGACGATCG-GGGG
326 GGCACCATCGCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGGGG
* *
187377 GGCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCC
391 GCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
187442 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
456 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * * * *
187506 CGCCAGTAGCTAGTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAAAGTCTTATAC
521 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
187571 ACTTTGAGTTTTTAGCTGAATTTTTATGTGCGTGCC-AAAAAAATACAAGGATCACGTCTACCAA
586 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTACCAA
* ** * * *
187635 GTTGGGGGCCAAAACTCCCCCCGAAAAACTTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAA
651 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
* *
187700 TCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTG
716 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
187765 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCAC
781 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
187830 CTACCACCTTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
846 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * *
187885 CCCGCCCGCCTGCCAGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
1 CCCGCCCG-C--CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* ** * ** * * * * *
187950 TAAGATGAGACCGGATTGAGTGTGGCGATAGCAGGATGGGCAGCATGCAGAGGGTGACTCGGCCG
62 TAAGATCAGACCGGACCGAGTGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCG
* * * * *
188015 ACCCCCGGCTTGCGCATCCCACCCATCTGGCCGGCTGAGTGCCCGCACGCTCTTTTCGTGGGTTG
127 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * * * *
188080 ACTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCTTTACCAGGCTAAGATCAGA
192 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*** *
188145 TTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTG
257 CCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
** * * * *
188210 TCGGGTTACCATCGTCGGAGCATCGCCGGAGAACCTGACTGGAGGCATTGGGGTTCCAACGATTG
322 TCGGGGCACCATCG-CGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCG
*
188275 -GGGGGCCGGGGAGGGGCTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
386 AGGGGGCCAGGG-GGGG--TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
188339 TCGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTGAATAGCATTTGAGATTTTAC
448 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
188404 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGCCACAAAA
513 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
188469 TCTTGTACACGTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
578 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACG
* * * *
188534 TCTACCAAGTTTGGGGCCAAAACTCATTCCGAAAAAAGTTTAAAAAATCCCAAACCACAAAAAGT
643 ACTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGT
* *
188599 TTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGG
708 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
188664 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCT
773 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * *
188729 AAACCCACCTACCACCCTATTGATCCACGGCTTGCACATCCCGTCTCTTTGGCC-G-GTA-T-
838 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
** * ** * ** *
188788 CGTGCCCGCCCGCTCGCTCGTTTTGTAGGTTGGCTTAGGCATATAGAGTTCGTTCCCAGTCTAAG
1 CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** ** * * * * * *
188853 ATTGGACAAGACCGAGGGTTGCGGCAGCATGATCAACAGCACGCACAGGGTGACCCGACCGATCC
66 ATCAGACCGGACCGAGTGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC
* * * *
188918 CCGACTTGTGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTT
131 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
188983 AGGCATACGGAGTTCATTCCCAGTCTAGGCATATGGAGTTCATTCCTAGTCTCAGATCGGACCAG
196 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * * *
189048 ACCAAGGGTTAC-AGCAGCACATGTTGGGCACGGGCATGTGCTGGTGCCGCCTTTTTCTTCGTCG
261 ACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** * * * * * * *
189112 GGGTGCCATCGTCGGAGCATCGCCGAAGAACGTAACCGACGGCATTGGGGTTCCGACGATCGAAG
325 GGGCACCATCG-CGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGG
* * * *
189177 TGGTC-GGGGGGGTGAGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCC
389 GGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
189241 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
454 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
189306 GCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATTGTCACAAAATCTTGT
519 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** *
189371 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTGTCCCAAAAAAAATACAAGGATCACGACTACC
584 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTACC
* * * *
189436 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTTCAAA
649 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAA
* *
189501 AATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCAT
714 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
189566 TGTGTGAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
779 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
189630 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGGCGACGTAGTGCTCG
844 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G
* * **
189691 CCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATGCGGAGTTCATTCTTAGTCTAAG
1 CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * ** *
189756 ATCACATCGGACTGAGCGTTGCGGCAGCAGGATCGACAGCATGTAGAACGGGACCCAACCGATCC
66 ATCAGACCGGACCGAGTGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC
* * * * * *
189821 CCGGTTTGTGCATCCCGCCCCTTTAGCCGGCTGAGCGCCCGTACGCTCGTTTCGTTGGTTGACTT
131 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
189886 AGGCATACGGAGTTCATTCCCAGGCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
196 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* * * *
189951 ACCCGAGGGTTACGACAGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
261 A-CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * * *
190016 GGGCACCAT--C---G---C--CGGAGAACCAGATTGGTGGCATTGGGGTTCCGATGATCGGGGG
325 GGGCACCATCGCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGGG
* *
190071 GGCCA--GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCC
390 GGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
190134 CTATCCCTCATCAAACCTTGAGAACTCAGACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTG
455 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
190199 CTGCCAATAGCCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
520 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* ** * *
190264 CACTTCGAGGTTTTAGCTGAATTTTTTTGTGTGTCCCAAAAAAAATACAAGGATCATGACTACCA
585 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTACCA
* * * **
190329 AGTTTGGGGCCAAAACGCCTTCTGAAAAAATGTTAAAAAATCCCAAATTGCAAAAAGTTTCAAAA
650 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
*
190394 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATT
715 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
190459 GTATGAATTTACAAGCCATAAATATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
780 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
*
190524 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCAGGCGTAGTG
845 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
190580 CCCGCCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTAG
1 CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * **
190645 ATCAGACCGGACCGAATGTTACAGCAGCAGGATCGGCAGTACGCAGAGGGGGACTCGTTCGATCC
66 ATCAGACCGGACCGAGTGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC
* * * **
190710 CCGGCTTGCGCATCTCGCCCTTCTGGTCGTTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
131 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
** * *
190775 AGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGACCAG
196 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
* *
190840 ACCGAGGGTTGCGACAGCACATGGTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGG
261 ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* *
190905 GGCACCATCGCCGAAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCC-AGCGATCGAGC
326 GGCACCATCG-CGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGA-CGATCGAGG
* * * * *
190969 GGGCCAGGGGGGGTGGGCGCACAAGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCC
389 GGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
191034 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
454 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
191099 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
519 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
191164 ACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATACCAAAAAAAATACGAGGATCACGTCTACC
584 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTACC
* * * *** * * *
191229 ATGTTTGGGGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCTTGAGCTGCAAAAAGTTTTAAA
649 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAA
* * * * *
191294 AATCATGAAAAATAAAAAATGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAAGGACCAT
714 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
191359 TGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGCAGGAATATGAAGATGTGCCTAAACCC
779 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
191424 ACCTACCACGCTATCGATCCACGGCTTGTGCATCCCGTCTCTCCGGCCGGCGTAGAG
844 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * * *
191481 CCCGCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGAAATTCATTCTCATTCTAAG
1 CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * ** *
191546 ATCACACCGGACCGAGTGTTGTGGCAGCTGGAGCGACAGCATGTAGAAGAGGG-CTGGGCCGATC
66 ATCAGACCGGACCGAGTGTTGCGGCAGCAGGATCGACAGCATGCAG-AGGGGGACCCGACCGATC
* * *
191610 CCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTC-------G---
130 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
*
191665 T-----T---G-GTTGA----C--T-TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
195 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCA
* * * * *
191714 GACTGAGGCTTGTGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
260 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * ** *
191779 AGGCACCATCGCCGGAGCATCATCAAAGAACCTAACTGGCGGCATTGGGGTTCCGACGATC-AGG
325 GGGCACCATCG-CGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGG
*
191843 GGGCC-GGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
389 GGGCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
191907 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
454 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
191972 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
519 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
**
192037 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACCAAAAATACAA-GATCAC-ATCTAC
584 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGA-CTAC
* * * * *
192100 TAAGTTTGGAGG-CAGAAA-TCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTG
648 CAAGTTTGG-GGCCA-AAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTC
* *
192163 GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTGACGTGAAGGCTTAAGGGA
711 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC-TTCACGTGAAGGCTTAAGGGA
192228 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
775 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
* * * * *
192293 ACCCACCTACCACCCTATCGGTCCCCGGCTTGTGCATCCCGCCCCTCTGGC
840 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
192344 TGGCTGAGCA
Statistics
Matches: 3929, Mismatches: 476, Indels: 122
0.87 0.11 0.03
Matches are distributed among these distances:
872 93 0.02
873 358 0.09
874 7 0.00
875 148 0.04
876 2 0.00
878 1 0.00
882 4 0.00
883 1 0.00
886 1 0.00
887 8 0.00
888 67 0.02
889 222 0.06
890 3 0.00
891 274 0.07
892 377 0.10
893 127 0.03
894 4 0.00
895 87 0.02
896 367 0.09
897 4 0.00
898 8 0.00
899 356 0.09
900 6 0.00
901 605 0.15
902 54 0.01
903 229 0.06
904 62 0.02
905 85 0.02
906 122 0.03
907 247 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
CCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
ATCAGACCGGACCGAGTGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC
CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG
ACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCGCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGGGG
GCCAGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGACTACCAA
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
Found at i:192420 original size:26 final size:26
Alignment explanation
Indices: 192384--192462 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
192374 GTTGACTTAG
192384 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
192410 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
192436 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
192462 G
1 G
192463 ATCGGACCAG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:194155 original size:901 final size:897
Alignment explanation
Indices: 192410--209472 Score: 9703
Period size: 901 Copynumber: 18.9 Consensus size: 897
192400 CCCAGTCTAA
* * * *
192410 GCATATGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
* * * * * *
192475 CGAGGGTTGCGGCAGCACATTCTGGGCTCAGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGGGC
66 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
192540 CACCATCGTCGAAGCATC-ATCGAAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
131 CA-GATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* * * *
192604 GCTGGGAGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
193 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATA
* *
192669 TCCCTCATCAAACCTCGAGAACTCACA-CACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
192733 CCAGTAGCCATTAAAGTGTCGGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
323 CCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* ** *
192798 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCTGGTTTACCAAG
387 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * *
192863 TTTTGGGCCAAAACTCCATCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAAT
452 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
192928 CATGAAAAATGAAAAACAAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
517 CATGAAAAATGAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** * *
192993 ATGAATTTACAAGTGACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
*
193058 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTC
647 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* *
193123 GCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
712 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * **
193188 CCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAAAGGTGGACCC-AGCCAATCTCCAACTTGCG
777 CCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCG
** *
193252 CATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACATTTGTTTCGTGGGTTGACTTAG
841 CATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
193309 GCATACAGAGTTCAATT-CCAGTCTAAGCGTACGGAGTTCATTCCAAGTCTAAGATCGGATCAGA
1 GCATACGGAGTTC-ATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGA
* * * * *
193373 TCGAGGGTTATGACAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGG
65 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * **
193438 GCAAGATCATCGGAGCATCGCTGGAGAACCTGACTGGCGGTTTTGGGGTTCCGACGATCGGGAGG
130 GC-AGATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GG
* * *
193503 GCCGGGGGGATGTGCACACATGATCTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCAT
193 GCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCAT
* *
193568 ATCCTTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
257 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
193633 GCCAGTAACCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
322 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
193698 CGTCGAGTTTTTAGCAGAAGTTTTTTGTGCATGCCAAGAAAAAATACAGGGATCACGTTTACCAA
387 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAA
* *
193763 GTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
451 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * *
193828 TCATGAAAAATGAAAAACAAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
516 TCATGAAAAATGAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
193893 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA-GAAAGATGTGCCTAAACCCA
581 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG-AAGATGTGCCTAAACCCA
* *
193957 CCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCCGC
645 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
** * * * *
194022 CCGCCCTTTCATTTCATCGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGGACCG
710 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * **
194087 GACCGAGGGTTACGATAGCAGGATCGGCAGCACGCAAAGGGGGACCC-AGCCAATCTCCAACTTG
775 GACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTG
* * *
194151 CGCATCCCACCCCTCTGGCCAGTTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
839 CGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * **
194210 GCATACTGAGTTCAATT-CCAGTCTAAGCATATGGAGTTCATTTGAAGTCTAAGATCGGATCAGA
1 GCATACGGAGTTC-ATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGA
* * *
194274 CCGAGGGTTACGACAGCACATGCTAGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGG
65 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * ** *
194339 GAAAGATCGTCGGAGCATCGCTGGAGAACCTGACTGGCAGTTTTGGGGTTCCGATGATCGGGAGG
130 G-CAGATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GG
* **
194404 GCCGGGGGGGATGTGCACACATGATGTGCGATGGGTGCAAGTACTTGGCCCTTATATTGGCCCCA
193 GCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCA
* **
194469 TATCCTTCATCAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
256 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * * * *
194534 TGCCAATAACCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAAAGATCACAAAATCTTGTAC
321 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * * *
194599 ACGTCGAGTTTTTAGCAGAATTGTTTTGTGCATGCCAAGAAAAATACAAGGACCACGTCTACCAA
386 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * * * * ** **
194664 GTTTGGGGCCAAAACTTCTTTCGATAAAATTTTTAAAAATCTTGAACCGTAAAAAGTTTTGAAAA
451 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
194729 TCATGAAAAAT-AGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATT
516 TCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
194793 GTATGAATTTACAAGCCATAAAAATGGCAATGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * *
194858 CCTACCACCCTATTGATCGACGGCTTGCGCATCCCATCTTTCTGGCAGGCCTAGTGCCCGCCCGC
645 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * *
194923 CCGCTCGCTCGCTCGTTTCAGCGGTTGGCCTAGGCATACGGAGTTCATTCCAAGTCTAAGATTAG
710 CCG--C-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
194988 ACCGGACCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGAACTCGATCGATCCTCGGC
771 ACCGGACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * * * *
195053 TTGCACATCCCGCCCCTCTGGCCGGCTAAGTGCCTGCACGCTCGTTTTGTGGGTTGACTTAG
836 TTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
195115 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--CT--G---GG--C--A-
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
* ** * ** *
195155 -GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGCGCCATATTTTTGTGT-GTCGGG
66 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT-TCGTCGGG
* *
195218 GC--A-C--C---G--TCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
130 GCAGATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* *
195273 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTAT
194 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATAT
*
195338 CCCTCATCAAACCTCGAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
259 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
**
195403 CAGTAGCCATTAAAGTGTCAAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
195468 TTGAGTTTTTAGCTGAATTTCTTTGTACATGCCAACAAAAATAAAAAGGGTCACGTCTACCAAGT
389 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT-ACAAGGATCACGTCTACCAAGT
* * * * * *
195533 TTGGGGCCAAAACACCTTCCGAAAAAATTTCAAAAAATCTCGAACTGTAAAAATTTTCAAAAATC
453 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * * *
195598 GTAAAAAAT-AGAAAACGAGTCAACTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGT
518 ATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** *
195662 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTTTCTAATCCCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * * *
195727 TACCACTCTATCGATTCACGGCTTGCGTATCACGTCTCTCTGGCCGGAGTAGT-CCTCGCCAGCC
647 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-CGCCCGCC
* * * *
195791 CGCCCGCTCGTTTCGTCAGTTGG-TTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGACTGG
711 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* *
195855 ACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGATGGGGACCCGACCGATCCCCGGCTTGCG
776 ACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCG
** *
195920 CATCCCGTACCTCTGGCC-GACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAG
841 CATCCCGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
195977 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
* * * *
196042 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATC---G
66 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * **
196104 -AG---G-C-G-CCATCG-TCGGAGAACCTGACCGGCGGTATTGGGGTTCCGGTGATCGGGGCGG
131 CAGATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GG
* * **
196161 CCAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTAT
194 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATAT
*
196226 CCCTCA-CTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTG
259 CCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
196290 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGACACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
196355 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATA-AGAGCATCACGTGTACCAAG
388 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA-AGGATCACGTCTACCAAG
* * * * **
196418 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAATCCCGAACCGCAAAAATTTTTGAAAAT
452 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
196483 CATGAAAAATAGAAAAACGAGTCATCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
517 CATGAAAAAT-GAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
196548 TATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTATACCCAC
581 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * ** *
196613 CTACCACCCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGTTGGCATAGT----GCCCGCC
646 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * *
196674 CGCCCG-TACGTTTCGTCCGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCTAAGATCAGACCA
711 CGCCCGCT-CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * * *
196738 GATCGAGGGTTATGGTAGTAGGATCGGTAGCACGTAGAGTGGGTCCCGACTGTTCCCCGGCTTGC
775 GACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * * * * *
196803 GCATCCTGCCCTTCTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTAACTTAG
840 GCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
196861 GCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAA-TCTACGATC-GTTGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAAGTCTAAGATCGGAT-CAG
* * *
196924 ACCGAGGGTTATGACAGCACATG-TGGGCTCGGGCACGTGCTGGTGCCGCATTTTTCTTCATCGG
64 ACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * *
196988 GGCACCATCGTTGGAGCATCGCTGGAGAACCTGACCGGCGGCACTGGGGTTCCGACGATC-GGGG
129 GGCA-GATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
**
197052 GCTCGGGGGTGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTT
193 GC-CGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCA
197117 TATCCCTCA-CTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
256 TATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
***
197181 CTGCCAGTAGCCATTAAAGTGTCTGAAAACAGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
320 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
197246 CACTTTGAGTTTTTGGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACTA
385 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * * * * ** **
197311 AGTTTGAGGCCAAAACTCCTTTCAAAAATATTTAAAAAAATCCTGAACCACAAAAAGTTTTGAAA
450 AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
197376 ATCATGAAAAATAGAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
515 ATCATGAAAAAT-G-AAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
197441 TTTTATGAATTTACAAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACC
578 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * *
197506 CACCTACTACCCTATCGACCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCTC
643 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C
** * * * *
197571 GCCTGCCCAACCGCTCATTTCATTGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--C
706 -CC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** ** * ** * * **
197634 ATA-C-G---TA--GTTCAT--TCCCA-G-TC-TAAG-A-TCAGA-CCGGA-CCGA-TGGT-TGC
769 AGACCGGACCGAGGGTT-ATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * ** * * * ** *
197681 GG-TAGCACATGCTG-GGCTCAT-G-CATGTGCTG-GTG-CCGTA--TTTTTCTTCATCGGG--G
833 GGCTTGCGCATCCCGCCCCTC-TGGCCA---GCTGAGCGCCCGCACGCTCGT-TTCGT-GGGTTG
197736 -C--A-
892 ACTTAG
* * * *** * *
197738 GCATCACCGGAG--CA---CC-GTCGGAGAACCTGACCGGTAG--CATT-GGGGTTCCGACGATC
1 GCAT-A-CGGAGTTCATTCCCAGTC-TA-AGCAT-A-CGG-AGTTCATTCCAAG-T-CTAAGAT-
** * * * ** * * *** * **
197794 CGG--GGGGCCGGGGGGGTGTG-C-GCACATGATGTGCAATGG---GTGCTGGTACTTCGCCCTT
56 CGGATCAGACC-GAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC--CGCATTT
* * * ** ** * * * * ** ** *** *** ** *
197852 ATATTAG-C--CCCCTATCCCTC--ATCAAAC-CTCGAGAACTCACACCCCCTTAAAAAGATTTG
118 TTCTTCGTCGGGGCAGAT-CGTCGGAGC-ATCGCTGGAGAAC-CTGACCGGCGGCATTGGGGTTC
* ** * *** * *** * * * * **
197911 AGATTTTATAGGTTTG-CTGCCAGT-AGC-CA-TTAAAGTGTCTGAAATGGG-GACACTTTTTCA
180 CGA--CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTG-C-G--ATGGGTG---C-TGGT-A
** *** * ** * * ** * * *** *** * ** ** **
197971 AATGGTCACAAAATCTTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTG--CGCATGCCAACAA
234 CTTGG-C-CCTTATATTGGCCCCAT--A-TCCCTCA--TCAAACCTCGAGAACTCACACCCCCTT
* ** * * * * ** ** * * * *
198033 AAATA-CA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAT-TTTGAAAAA
292 AAAGAGCATTTGA-GA-TTTTA-CAGGTTTGCTGCCAGTA-GCCATT---AAAGTGTCTG--AAA
*** ** * * * * * *** * *
198095 TCTCGA-A---TCGTAAAAAGTTGCA-AAAATCATGAAAAATAGAAAACGGGTCCTCTT-GCCAT
348 TGGGGACACTTTTTTCAAATGGT-CACAAAATCTTG-----TACACTTCGAGT--TTTTAG-C-T
** *** * * * * * * ** ***
198154 GAAACTTCACGTG-AAGGC--------T-TAAGGCAGCA-TTGTATGAA-TTTATAAGCCATAAA
403 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGG-ATCACGTCTACCAAGTTT-GGGGCC--AAA
* * * * * * * * ** * * * * *** * **
198207 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATC---GCTCC
464 ACT--CCTT-CCA--AAAAAATTTTAAAAAATCCCGAA---C-CGTA-AAAAGTTTCAAAAAT-C
* ** *** * ** ** * **
198269 ACG--GCATGCGTATCCCGTC-TCTCTGGCTGACGTAGTG-CCCGTCCACCCGCTCGCCCGCCCG
518 ATGAAAAATGAAAAACGAGTCATCT-T-GC---C--A-TGAAAC-TTCA--CG-T-G-AAG---G
** * * ** * * *** * ** **
198330 CTCGTCCGCCCG-CTCATT-TCATCG-GTTGGCTTAGGCATACGGA-GTTCATTCCCATTCTAAG
566 CT--TAAG--GGAC-CATTGT-AT-GAATTTAC-AAGCCATAAAAATG-GCATTGGCA--CGCAG
* * * * **
198391 ATCAGACTA-GACCGAGGGTTGCAGTAGCAAGATCGCCAGC-ACGCAGAGGGGGACCCGGTCGAT
620 A--A-A-TATGA-AGA-TG-TGC-CT---AA-A-C-CCACCTAC-C--------ACCCTATCGAT
* * * * * * **** * * * *
198454 CCTCGACTTGTGCATCCCGCCCCTCTTGCTAATGTAGTGCCCGCTCGCCCGCCTGCTCATTTCGT
662 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCAT
* * ** * * * *** *
198519 AGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCGAACTGAGGGTTGCAGCA
727 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTA
* * *
198584 ACAGGATCGACAGCACGCAGAGGGGGA--C--CCG------GGCTTGCGTATCCCGCCCCTCTGG
792 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
198639 CCTGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAG
857 CCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
198680 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAA-TCTAAGATCAGATCAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAAGTCTAAGATCGGATCAGA
** * * *
198744 CCGAGGGTTTTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTCTCTTCGTCGGG
65 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * **
198809 GC--A-C--C--ATCA-C-C-GGAGAACTTGACCGGCGGCATTAGGGTTTTGGA-GATCGGGGGG
130 GCAGATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATT-GGGGTTCCGACGATCGGGGGG
* * ** * * * *
198863 CTTGGGGGCTACGCGCACATGATGTGCAATGGGTGCTGGTACTTGGGCCTAATATTGGCCCCCTA
194 C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATA
* * *
198928 TCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTG
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * **
198993 CCAGTAGCAATTAAAGTCTTTGAAATGGGGACGTTTTTTTCAAATGGTCACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
199058 TTTGAGTTTTTAGCTGAATTGTTTTGTGCGTGCCAACAAAAATACAACGATCACGTCTACCAAGT
388 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
199123 TTGGAGCCAAAACTCCTTCCGAAAAATTTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
453 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
*
199188 ATGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
518 ATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
199252 ATGAAATTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAAGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
199317 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGTCGGCGTAGTGCCCGCCAGCCC
647 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
199382 ACCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
712 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
** ** * ** ** *
199447 CCGAGGGTTGCGACAGCAGGATCGACATAACGCAGAGGGGGA-CCGAGCCGATCCTTGGCTTACG
777 CCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCG
*** * * *
199511 CATCGTACCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAG
841 CATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
199568 GCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
* ** ** * * * *
199633 TGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATGTGCTGGAGCCACATTTTTCTTTGCCGGGG
66 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * *
199698 CACCATTGTCGGAGCATCACCGGAGAACCTTACCGACGGCATTGGGGTTCCGGCGATCGGGGTGG
131 CA-GATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GG
*
199763 TCGGGGGGGTTGTGCGCACAT-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGC-
194 -CCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CA
* *
199826 TATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
256 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
199891 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTAC
321 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
199956 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
386 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * * * * *
200021 GTTTGGTTCCAAAACTCCTTTCGAAAAAATTTTACAAAATCTCGAACTGCAAAAAGTTTCAAAAA
451 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
200086 TCATGAAAAAT-AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
516 TCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * * * * ** *
200150 TTATGAATTTACTAGCCACAAAAACGGCATTGGTATC-TAGAAATATGAAGATGTGAGTAAACTC
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGCCTAAACCC
** *
200214 ACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCTG
644 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--
* * ** * *
200279 CCCACCTGCCCGCTCTTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAATATCA
707 CGC-CC-GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * ** ** *
200344 -AGCCAGATCGAGGGTTGCGACAGCAGGATCAGCAGCACGCAGAGGGGGA--C--CCGA----C-
770 GA-CCGGACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* ** * * * *
200399 -CTTACGCATCCCGCCCCTCTGATCGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAA
834 GCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
200462 GCATAAGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---C----C--A-A----A-C--A-
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
* * * * * * * *
200502 -GAGGGTTGCGGCAGAACATGATGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTTTCGTCAGGG
66 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * ** * * *
200566 CACCATCGCCGGAGCATCGGGGGAGAACCTGACCGACGGCATTAGGGTTCCGACGAT-----TG-
131 CA-GATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
* * * ** ** * **
200625 -AGGGGGTGTGCGCACATTATGTGTGATGGGTTGC-GGTAGCAGGAGGGGCAGCACGCAGAAGGG
195 CGGGGGGTGTGCGCACATGATGTGCGATGGG-TGCTGGTA-C----TTGGC--C-CTTA-TATTG
** ** ** * * * ** ****
200688 GACCCGACCGATCCC-CGGC---TTTC--GCA-TCCCGCCCCTCTGGTTGACTGAGCGCCCGCAC
250 G-CCC--CATATCCCTCATCAAACCTCGAGAACTCACACCCC-C---TT-AAAGAGCATTTG-A-
* * * * ** * ** * * **
200746 GATCATTT-CGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-
305 GAT--TTTAC-AGGTTTG-C-T--GC-CA-GTAG-CCATT-AAAGTGTCTG-AAATGG-GGACAC
*** * * *** * * * ** ** * *
200809 TTCCCAGTCTAATATCG-AACCAGACCGAGGGTTGTGGCAGTAC-A-TGCTGGGCTCGGGCATGT
357 TT--TTTTC-AA-ATGGTCA-CA-A---AATCTTGT-ACACTTCGAGTTTTTAGCT---GAATTT
** * ****** * * * * * * * * * *
200871 ACTGGTG-ATG-C-ATTTTTCTTCATCGGAGCACCATC-GCCGGAGCATCGTCGG--AGAACCTG
409 TTTTGTGCATGCCAAAAAAAATACA-AGGATCA-CGTCTACC-AAG-TTTG-GGGCCA-AAACT-
* ****** ****** ** ** *** * ** * * ****
200930 ACCGTTGGC-ATTGGGGTTCCGGCGATCGGGGGGGCC--AGAGGGGTGTGCGCACATGATGTGCG
467 -CC-TT-CCAAAAAAATTTTAAAAAATC--CCGAACCGTA-AAAAGT-TTCAAAAATCATGAAAA
** * * * * * ** * * *** * *
200992 ATG-AGTACTG-GT-A-CTTGGCCCTTATA-TTGGCCCCCT--ATCCCTCATCAAACTTTG-A-G
525 ATGAAAAAC-GAGTCATCTT-GCCATGAAACTT---CACGTGAAGGCTTAAGGGACCATTGTATG
* * ** * * * *** * * * * *
201048 AACTCACACCCCTTAAAGA--GCATTTG-A-G-A-TTTTAT-AGGTTTGTTGCC-AGTAGCCA-T
585 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAG-ATG-TGCCTA-AACCCACC
** * * * * * * ** * * *
201104 TA--A-AGTATCTGA--AATGG---G-G-A-CACTTTTTTCAAATGGTCACAAAATC-TTGTACA
647 TACCACCCTATC-GATCCACGGCTTGCGCATCCCGTCTCTC---TGG-C-C---GGCGTAGTGCC
** * ******* ** * ** * ** *** * * *
201157 CTTCGGGTTTTTAGCT-GAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCGCGTC-TACCA
703 CGCCCGCCCGCCCGCTCG----TTTCATCGGTTGGC-TTAGGCATAC--GGA--G-TTCATTCCC
* ** ** * * *** * ** * * * **
201220 AGTTTGGGGCCAAAAAACC--ATCCAAAAAAATT-T-TTA--AAAATC--CTGAACCGCAAAAAG
758 AGTCT-AAG--ATCAGACCGGA-CC--GAGGGTTATGGTAGCAGGATCGGCAGCA-CGCAGAGGG
*** *** * ****** * ** * ** * * * * * * * *
201277 TTTCAAAAATC-AT-GAAAAATAG-AAAACGAG-TCATCTTGCCA--TGAAACTTCACGTGAAG-
816 GGAC-CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTG-AGC-GCCCG-CACGC
** *
201335 TC-TTAAG-GGACCATTGTATGAATTTACAAG
877 TCGTTTCGTGG------GT-TG-ACTT---AG
* ** * * ** ** * * * * * * ** * **
201365 CCATA-AAAATGGCATTGGCACGTAGAA--ATATGAAGATGTGCATAAACCCA-CCCACCACCCT
1 GCATACGGAGT-TCATTCCCA-GTCTAAGCATACG--GA-GTTCAT--TCCAAGTCTAAGATCGG
* * * * * * * **
201426 ATC-GATCCAAGGCTTGCAGATCCCGTCTC-T-CTGGG--C-GACGTAGTGCCTGCCCGCCCGCT
59 ATCAGA-CCGAGGGTTAC-GA--CAG-CACATGCTGGGCTCGGGCAT-GTG-CTG-GTG-CCG--
* ** * * * ** * *
201485 CATTTTGTCAGTTAG-CTTAGGC--AT--ACAGAGTTCATTCCCAATCTAAGATCAGACTAGATC
113 CATTTT-TC--TTCGTC-GGGGCAGATCGTCGGAG--CA-TCGC--T-GGAGA--A-CCT-GACC
* * ** * ** * * *
201545 GAG-GGTCATGGTAGCAGGAATGATAGCACGTA-GAGC-GGGACCCAGCTGATCCCTAGCTTGCG
164 G-GCGG-CAT--T-G--GG---G-T-TC-CG-ACGATCGGGGGGCCGGGGGGT--GT-GC--GCA
*** ** ** * ** * * * *
201607 CATCCCGCCCCTCTGGCCG-GCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTACGCATACG
210 CATGATG-TGCGATGG--GTGCTG-GTACTTG---GC-C--CTTAT--ATTGGC---C-C---C-
* * * ** ** ** * ***
201671 GAGTTCATTCC-CAGTCTAAGCATACG-GAGTTCATTCCCAGTCT-AAGATCA---GACCGAACC
255 -A--T-ATCCCTCA-TC-AAACCT-CGAGAACTCACACCCCCT-TAAAGAGCATTTGA--GATTT
* * * * * * ** * ** *
201730 GA-GGGTTACCGCAGCACATGCTGGGC--TCGAGCATGTGCTG--GTGCCG-CATTTTTCTTCGT
310 TACAGGTT--TGCTGC-CA-G-TAGCCATTAAAG--TGT-CTGAAATGGGGACA-CTTT-TT--T
* * * * ** * ** *
201789 CGGGGCACTATCGCCAGAGCAACATCGGAGAAC-CTGATCG-GTGGCATTAGGGTTCCGACGATC
363 -----CA-AATGGTC--A-CAAAATC-TTGTACACT--TCGAGT--TTTTA--G--CTGA--AT-
****** * ** * ** ** * ** * *
201852 GGGGGGCCGGGGGGGTTGTACGCACATGATGTA-AGATGGGTGCTGGTACTTGGCCCTTA-TATT
407 -----TTTTTTGTGCATG--C-CAAAAAAAATACA-A-GGAT-CACGT-C-T--ACC-AAGT-TT
* *** * ** ** ** * * ** * * **
201915 -GGCCCTCTA-TCCCT-C-ATCAAACCTCGAGAACTCACAC-CCCCTTAAAAAGCATTTGAGATT
455 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATC-C-CGAACCGTAAAAAG--TTTCA-AAA
* * ***** ** * * * * * * *
201975 TTACAGGTTTGCTGCCAGTAGCCATTAAT-GTGTCCGAAATGGGGACACTTTTTTCAAATGGTCA
515 AT-CATGAAAAATG--AAAAACGAGTCATCTTG-CC---AT---GAAAC----TTC--A-CGT--
* ** ** *** ** * * * * *
202039 CAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTGTGCATGCCAACAAAAAT-ACA-AGG
561 -GAAGGC-T-TA-A--GGGA-CCATTGTATGAA----TT-TACAAGCC-ATAAAAATGGCATTGG
* * * * * * ** * *** ** *** *
202102 ATCACGTCTACCAAGTTTG--G--G-GTCGAAACTCATTTTGA-AAAAATATTAAAAAATC-CCA
613 --CACG-C-A-GAAATATGAAGATGTGCCTAAACCCA-CCT-ACCACCCTATCGATCCA-CGGC-
*** * **** * ***** ***** ** ** * **
202160 AACCGTAAAAAGTTTCAAAAATCAT-G-AAAAATAGAAAATGATTCGTCTTGCCATGAAAC--TT
669 TTGCGCATCCCGTCTC-----TC-TGGCCGGCGTAGTGCCCG-CCCG-CCCGCC-CG-CTCGTTT
** * * * ** * * * * ** *
202221 CA-CGTGAAGGCTTAAGG--GAC-CA-TT-GTT-TGAATTTACAAGCCATAAAAATGG--C-ATT
724 CATCG-GTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCT--AAG--ATCAGACCGGACCGA-G
* * * * **** * * * **
202276 GG-CATGCAGAAATAAG-AAGAT-GTGCCTA-AACCCA-CCTAGCACCCTATCGATCTACGGCTT
782 GGTTATG--G---T-AGCAGGATCG-G-C-AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * * * * * **** **** *** **
202336 GCGCATCTCGTCTCTCTAGTCGGC-GTAGTGCCCGCCCGC-CCACCCACCCGCCCAC-CCG
838 GCGCATCCCGCCCCTCTGGCCAGCTG-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *** * * * * *
202394 CCCACT-C-G-TTTCA-TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-C
1 -GCA-TACGGAGTTCATTC-CCAGTC-TAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATC
* * * * * * * *
202454 TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTAGTGTCGTATTTTTCTTCGC
62 -AGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* *
202519 CGGGGC--A----C----CATCG-TCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGG
126 CGGGGCAGATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-G
202573 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
189 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
202638 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATCTGAGTTTTTATAGGTTT
254 CATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
202703 GATACCAATAGCCATTAAAGTGTCT--AA-----A-A------T--GA-GG--AC---A-C-T-T
319 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
202743 ---C--C-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACC
384 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
* * *
202802 AAGTTTAGGGCCAAAACTCTTTCCAAAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
449 AAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
**
202867 AAATCATGAAAAAT-AGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAAC
513 AAATCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-AC
* * *
202931 AATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCTTAAA
576 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * *
202996 CCCACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCAGCGTAGT----GC
641 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * **
203057 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATGGG
706 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** ** * * * * *
203122 ACCGGATTGAGGGTTGCGGTAGTAGGATCGACAGCACGTAG-GGGGGACCCGGCCGATCCCCGAC
771 ACCGGACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
** * * * * *
203186 TTGCTTATCGCGCCCCTCTGGTC-GACTGTGCGCCCGTACGCTCGTTACGTGGGTTGACTTAG
836 TTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
203248 GCAAAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATACCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
* * * * *
203312 TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCCT-GGGA
66 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* ** * ** * * *
203376 CACCATCACCGGAGTATCGCCAGAGAACCTGACCGACGGTATTGGGGTTCCGGCGATC-GGGGGC
131 CA-GATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
* * ** *
203440 CGGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGCACTTCACCCTTATATTGGCCCCCTAT
195 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATAT
203505 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
259 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
203570 CAGTAGTAGCCATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATCGTTACAAAATCTTGTAC
324 C---AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
203635 ACTTCAATTTTTTTGCTGAATTTTTTTGGGCATGCC-AAAAAAATACAAGGATCACGTCTACCAA
386 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
** * * * * * * * **
203699 GTTTGGGGCCAAAACTATTTTCGAAAAATTTTTAAAAAATCTCAAACGGCAAAAAGTTTTGAAAA
451 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
203764 TCGTGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
516 TCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
203828 GTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
580 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * ** *
203893 CCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGCCAACGTAGT----GCCCAC
645 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * * * * *
203954 CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCTTACAGAGTTCATTCCTAATCTAAGATCGGACTG
710 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * *
204019 GACTGAGGGTTACGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCAATCCCCGACTTGC
775 GACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGC
** * * * * *
204084 TTATCCTGCCCCTCTGGCC-GACTGTGCGCGCGCACGCTAGTTACGTGGGTTGACTTAG
840 GCATCCCGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * *
204142 GCAAATGGAGTTCAATCCCAGTCTAAGCATTCGGAGTTCATACCCAGTCTAAGATCCGA-CCGAA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAG-A
* * * * * * *
204206 CCAAGGGTTACGGCAGCAGATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCCT-AGG
65 CCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * * * *
204270 GCACCATCGCCGGAGCATCG-TCGGAGAACCTGACCGGCGGTATTGGGGTTTCGATGATCGGGGG
130 GCA-GATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGG
* * * * ** *
204334 GGCCGGAGGGGTCTACGCACATGATGTGCGATGGGTGCTGGCACTTCGCCCTTATATTCACCCCC
192 GGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCA
*
204399 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTAACAGGTTTGC
256 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
204464 TGCCAGTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
321 TGCC---AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
204529 TACACTTC-AATTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTA
383 TACACTTCGAGTTTT-TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * ** * **
204593 CCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTAAAAAAATCTTGAACCGCAAAAAGTTTTG
447 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* * * * *
204658 AAAATCGTGAAAAAT-AGAAAACTAGTCGTCTCGCCATGAAACTTCACGTGAAAGCTTAAGGGAC
512 AAAATCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** * *
204722 CATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAA
576 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* ** * * *
204787 CCTACCTACCACCCTATCGATCCGTGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCAC
641 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * * *
204852 CCACTCGCCCGTTCGTTTCGTCGGTTGGCTTAGGCTTATGGAGTTCATTCCCAGTCTAAGATCGG
706 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
204917 ACC-GAGCTGAGGGTTGTGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGG
771 ACCGGA-CCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* * * *
204981 CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTCACTTAG
835 CTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
205044 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTTCC-AGTCTAAGCATATGGAGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCAAG--T---C-TA---AG--
* * *
205108 TATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCCCGGGCATGTG
54 -A-T--C-G-----GATC--A---GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTG
* * ** * * * * ** * *
205173 TTGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGAAGAACCCAATCGGTG
104 CTGGTGCCGCATTTTTCTTCGTCGGGGCA-GATCGTCGGAGCATCGCTGGAGAACCTGACCGGCG
* * *
205238 GCTTTAGGGTTCCGACGATCGGGGGGCCGGGGAGGGTGTGCGCACGTGATGTGCGATGGGTGCTG
168 GCATTGGGGTTCCGACGATCGGGGGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * **
205303 GTACTTGGCCCTTATATTGGCCTTC-TATCCCTCACCAAACCTAGAGAACAAACACCCCCTTAAA
231 GTACTTGGCCCTTATATTGGCC-CCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
205367 GAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGCGGACACTTT
295 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
205432 TTTCAATTGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTAAATTTTTTTGTGCATGTCAAC
360 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * *** *
205497 AAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTTTGAAAAAATTTTACAAAA
425 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
* * **
205562 TCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAACGAGTTGTCTTGCCATGAAAC
490 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAAC
*
205626 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
554 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
205691 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACAGCTTCCGCATCCCATCT
619 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
205756 CTCTGGCCGACATAGTGCTTGCCCGCCCGCCCGCCCGCCCGTTCGTTTCATCAGTTGGCTTACGC
684 CTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCG--C--TCGTTTCATCGGTTGGCTTAGGC
* ** * ** * * *
205821 ATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGTGTTGCGGCAGCCGGATCGGTAGC
741 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATCGGCAGC
* ** * *
205886 ACGTC-GAGGTGGACTTGACTGATCCCCGGCTTGCGCATCCCGCCCCTCAGGCC-GACTGAGCGC
806 ACG-CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGC
* * * *
205949 CCACACGTTCTTTTCATGGGTTGACTTAG
869 CCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * **
205978 GCATACGAAGTTGATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
** *
206043 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
66 CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * * * *
206108 CACCATCGTCGGAGCATCGTTGAAGAACCTGATCGACGGCATTAGGGTTTCGACGACCGGGGGGG
131 CA-GATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* * * * *
206173 TCGGGGGGGGTGTAGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATT-GCCCCCTA
194 CCGGGGGGTGTG-CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATA
* * * *
206237 TCCCTCATCAAACCTCGAGAACTCATAGCCCCTTCAAGAGCATTTCAGATTTTACAGGTTTGCTG
258 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
206302 CCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACAC
323 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
206367 TTCGAGTTTATAGCTGAATTGTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGT
388 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
206432 TTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
453 TTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
206497 ATGAAAAAT-AGAAAATGAGTCATCTCGCCATGAAACTTGACGTGAAGGCTT-AGGGACCATTGT
518 ATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
206560 ATGAATTTACAAGCCCTAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
582 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
206625 TACCACCCTATCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGT----GCCCGCCC
647 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * *
206686 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGA
712 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * ** * * *
206751 CCGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGA-GGGGACTCGGTCGATCCCTGGCATGCGA
777 CCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * * * *
206815 ATCCCGCCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAA
842 ATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
206871 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAG-AT-C---G---
** * * *
206936 ATTCCTAATCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGATGCTGGGCTCGAGCATGTGC
58 -------------GATCAGA-C----CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * ** *
207001 TGGTGCCGCATTTTTCTTTGCCGGGGAACCATCACCGGAGCATCG-TCGGAGAACCTGACCAGCG
105 TGGTGCCGCATTTTTCTTCGTCGGGGCA-GATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCG
* *
207065 GCATTGGGGTTCCGACGATC----AG--GGGGGGTGTGCGCACATGATGTGCGACGGGTGCTGGT
168 GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
207124 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
207189 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
207254 CAAATGGTCACAAAATCCTGTACATTTCGATTTTTTAGCTGAAATTTTTTGTGCATGCC-AAAAA
363 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* **
207318 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCCCCAAAAAAATTTTAAAAAATCC
428 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * * *
207383 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAATGAGTCGTCTTGCCATGAAACTTC
493 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTC
* *
207447 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAA
557 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * * *
207512 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTCCGCATCCCGTCTCCC
622 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * * *
207577 TGGAAGACGTAGT----GCCCGCCCGCCCGCACGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
687 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * * * **
207638 ATTCCCAGTCTAAGATCGGACCAGACCAACGGTTGTGGTAGAAGGATCGATAGCACGTCA-AGGG
752 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGTAGCAGGATCGGCAGCACG-CAGAGGG
* * * * * *
207702 GGACCCAACCGATCCCTGGCTTGCTCATCCTGCCCCTCTGGCCGGCTGAGCGCTCGCACGCTCGT
816 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGT
*
207767 TTCATGGGTTGACTTAG
881 TTCGTGGGTTGACTTAG
* * * * * * *
207784 GCAGACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
* * * *
207849 CGAGGGTT-CCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCATCGGG
66 CGAGGGTTACGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* ** * * *
207913 GCACCATCACCGGAGCTTCG-TCGGAGAACCTGACCGTCGGCATTGGGGTT-CTAGCGATCGGGG
130 GCA-GATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGG
* *
207976 GGGCCGGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCC
191 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
208041 CTATCCCTCATCAAACCTTGAGAACTCACACCCCCATAAAGAGAATTTGAGATTTTACAGGTTTG
255 ATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
208106 CTGCCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
320 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
208171 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACCA
385 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* * ** * * *
208236 AGTTTGAGACC-AAACTTCCTTCTGAAAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTCAAA
450 AGTTTGGGGCCAAAAC-TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* * * *
208300 AATCGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCAT
514 AATCATGAAAAATGAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * *
208365 TATACGAATTTACAAGCCATAGAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACC
579 TGTATGAATTTACAAGCCATA-AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
208430 TACCTACCATCCTATGGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAATGCCCGCCC
643 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * *
208495 GCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
708 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * ** * *
208560 CAGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGA-GGGGACTCGGTCGATCCCTGGCAT
773 CGGACCGAGGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * * * * *
208624 GCGAATCCTGCCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAA
838 GCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
208684 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAG-AT-C---G---
** * * *
208749 ATTCCTAATCTAAGATCAGACCAGATCGAGGGTTGTGGCAGCAGATGCTGGGCTCGAGCATGTGC
58 -------------GATCAGA-C----CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * ** * *
208814 TGGTGCCGCATTTTTCTTTGCCGGGGAACCATCACCAGAGCATCG-TCGGAGAACCTGACCAGCG
105 TGGTGCCGCATTTTTCTTCGTCGGGGCA-GATCGTCGGAGCATCGCT-GGAGAACCTGACCGGCG
* *
208878 GCATTGGGGTTCCGACGATC----AG--GGGGGGTGTGCGCACATGATGTGCGACGGGTGCTGGT
168 GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
208937 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
209002 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
209067 CAAATGGTCACAAAATCCTGTACATTTCGATTTTTTAGCTGAAATTTTTTGTGCATGCC-AAAAA
363 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
* **
209131 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCCCCCAAAAAAATTTTAAAAAATCC
428 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCC
* * * *
209196 CAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT-AGAAAATGAGTCGTCTTGCCATGAAACTTC
493 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATGA-AAAACGAGTCATCTTGCCATGAAACTTC
* *
209260 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAA
557 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* *
209325 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCGACGGCTTGCGCATCCCGTCTCTC
622 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
209390 TGGCTGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTC
687 TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
*
209451 ATTCCCAGTCTAAGATGAGACC
752 ATTCCCAGTCTAAGATCAGACC
209473 AAACCGACGG
Statistics
Matches: 12606, Mismatches: 2527, Indels: 2049
0.73 0.15 0.12
Matches are distributed among these distances:
851 2 0.00
852 51 0.00
853 105 0.01
854 22 0.00
855 14 0.00
856 3 0.00
857 7 0.00
858 16 0.00
859 28 0.00
860 8 0.00
861 13 0.00
862 291 0.02
863 57 0.00
864 30 0.00
865 39 0.00
866 221 0.02
867 254 0.02
868 151 0.01
869 14 0.00
870 27 0.00
871 27 0.00
872 14 0.00
873 27 0.00
874 9 0.00
875 26 0.00
876 21 0.00
877 31 0.00
878 156 0.01
879 74 0.01
880 43 0.00
881 30 0.00
882 46 0.00
883 91 0.01
884 245 0.02
885 35 0.00
886 117 0.01
887 316 0.03
888 499 0.04
889 27 0.00
890 37 0.00
891 38 0.00
892 43 0.00
893 372 0.03
894 612 0.05
895 565 0.04
896 370 0.03
897 335 0.03
898 286 0.02
899 201 0.02
900 746 0.06
901 1072 0.09
902 440 0.03
903 32 0.00
904 157 0.01
905 186 0.01
906 135 0.01
907 291 0.02
908 156 0.01
909 11 0.00
910 2 0.00
911 185 0.01
912 464 0.04
913 125 0.01
914 15 0.00
915 8 0.00
916 87 0.01
917 164 0.01
918 224 0.02
919 121 0.01
920 13 0.00
921 21 0.00
922 22 0.00
923 9 0.00
924 6 0.00
925 59 0.00
926 437 0.03
927 39 0.00
928 85 0.01
929 232 0.02
930 23 0.00
931 15 0.00
932 13 0.00
933 13 0.00
934 199 0.02
935 26 0.00
936 19 0.00
937 21 0.00
938 15 0.00
939 18 0.00
940 21 0.00
941 18 0.00
942 24 0.00
943 11 0.00
944 19 0.00
945 18 0.00
946 8 0.00
947 9 0.00
948 2 0.00
951 2 0.00
954 2 0.00
955 1 0.00
956 1 0.00
957 4 0.00
958 1 0.00
959 2 0.00
960 6 0.00
962 8 0.00
963 24 0.00
964 8 0.00
965 8 0.00
966 5 0.00
968 7 0.00
969 11 0.00
970 3 0.00
971 9 0.00
972 4 0.00
973 4 0.00
974 10 0.00
975 3 0.00
976 14 0.00
977 3 0.00
978 6 0.00
979 13 0.00
980 3 0.00
981 3 0.00
982 5 0.00
983 2 0.00
984 7 0.00
985 5 0.00
986 5 0.00
987 11 0.00
988 4 0.00
989 4 0.00
990 7 0.00
991 11 0.00
992 11 0.00
993 6 0.00
994 14 0.00
995 2 0.00
996 4 0.00
997 3 0.00
998 6 0.00
999 4 0.00
1001 5 0.00
1002 6 0.00
1003 2 0.00
1004 3 0.00
1006 6 0.00
1009 5 0.00
1010 2 0.00
1014 2 0.00
1016 2 0.00
1017 1 0.00
1018 7 0.00
1019 4 0.00
1020 6 0.00
1021 5 0.00
1022 5 0.00
1023 5 0.00
1024 20 0.00
1025 42 0.00
1026 31 0.00
1027 30 0.00
1028 33 0.00
1029 20 0.00
1030 28 0.00
1031 66 0.01
1032 21 0.00
1033 12 0.00
1034 14 0.00
1035 21 0.00
1036 24 0.00
1037 24 0.00
1038 14 0.00
1039 25 0.00
1040 23 0.00
1041 13 0.00
1042 12 0.00
1043 11 0.00
1044 13 0.00
1045 10 0.00
1046 7 0.00
1047 5 0.00
1048 2 0.00
1049 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGATCAGAC
CGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CAGATCGTCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
AAAAATGAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
GGGTTATGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
CGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:196013 original size:26 final size:26
Alignment explanation
Indices: 195977--196029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
195967 GTTGACTTAG
*
195977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
196003 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
196029 G
1 G
196030 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:196346 original size:888 final size:882
Alignment explanation
Indices: 195115--197632 Score: 3423
Period size: 888 Copynumber: 2.8 Consensus size: 882
195105 GTTGACTTAG
* * * *
195115 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGGCAGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * *
195180 CTCGGGCATGTGCTGGCGCCATATTTTTGTGT-GTCGGGGCACCGTCGCCGGAGAACCTGACCGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCT-TCATCGGGGCACCATCGTCGGAGAACCTGACCGG
* *
195244 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCG
129 CGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGTGTGTGCACATGATGTGCGATGGGTGCT
** *
195309 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACCCGCTTAA
192 GGTACTTGGCCCTTATATTGGCCCTTTATCCCTCACT-AAACCTCGAGAACTCACACCCCCTTAA
**
195373 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAAAAATGGGGACACTT
256 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
195438 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTCTTTGTACATGCCAA
321 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
195503 CAAAAATAAAAAGGGTCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTCAAAA
386 CAAAAAT-AAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAA
* * * * * *
195568 AATCTCGAACTGTAAAAATTTTCAAAAATCGTAAAAAATAG-AAAACGAGTCAACTTGCCATGAA
450 AATC-CGAACCGCAAAAATTTT-GAAAATCATGAAAAATAGAAAAACGAGTCATCTTGCCATGAA
* **
195632 ACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
513 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
** * * * *
195697 CAGAAATATGAAGATGTTTCTAATCCCACCTACCACTCTATCGATTCACGGCTTGCGTATCACGT
578 CAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
*
195762 CTCTCTGGCCGGAGTAGTCCTCGCCAGCCCGCCCGCTCGTTTCGTCAGTTGGTTAGGCATACTGA
643 CTCTCTGGCTGGAGTAGTCCTCGCCAGCCCGCCCGCTCGTTTCGTCAGTTGGTTAGGCATAC-GA
**
195827 GTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGA
707 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGA
* *
195892 -TGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGTACC-TCTGGCCGACTGAGCGCCTGCACG
772 GT-GGGACCCGACCGATCCCCGGCTTGCGCATCCCG-ACCTTCTGGCCGACTGAGCACCCGCACG
*
195955 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
196003 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
196068 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGAGGCGCCATCGTCGGAGAACCTGACCGGC
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGC
* **
196133 GGTATTGGGGTTCCGGTGATCGGGGCGGCCAGGGGGTGTGTGCACATGATGTGCGATGGGTGCTG
130 GGCATTGGGGTTCCGACGATCGGGG-GGCC-GGGGGTGTGTGCACATGATGTGCGATGGGTGCTG
196198 GTACTTGGCCCTTATATTGGCCCTTTATCCCTCACTAAACCTCGAGAACTCACACCCCCTTAAAG
193 GTACTTGGCCCTTATATTGGCCCTTTATCCCTCACTAAACCTCGAGAACTCACACCCCCTTAAAG
*
196263 AGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
258 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * **
196328 TTGAAATGGACACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-A
323 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
196392 AAAATAAGAGCATCACGTGTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAACAAAT
388 AAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT
* *
196457 CCCGAACCGCAAAAATTTTTGAAAATCATGAAAAATAGAAAAACGAGTCATCCTACCATGAAACT
453 -CCGAACCGCAAAAA-TTTTGAAAATCATGAAAAATAGAAAAACGAGTCATCTTGCCATGAAACT
*
196522 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* *
196587 AAATATGAAGATGTGCCT-ATACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCATCT
581 AAATATGAAGATGTGCCTAAT-CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
196651 CTCTGGTTGGCA-TAG---T-GCCCGCCCGCCCG-TACGTTTCGTCCGTTGGCTTAGGCATACGT
645 CTCTGGCTGG-AGTAGTCCTCGCCAGCCCGCCCGCT-CGTTTCGTCAGTTGG-TTAGGCATACG-
* * * * *
196710 AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTATGGTAGTAGGATCGGTAGCACGTAG
706 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAG
* * * * * ** *
196775 AGTGGGTCCCGACTGTTCCCCGGCTTGCGCATCCTGCCCTTCTGGCCGGTTGAGCACCCGTACGC
771 AGTGGGACCCGACCGATCCCCGGCTTGCGCATCCCGACCTTCTGGCCGACTGAGCACCCGCACGC
196840 TCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * ** *
196887 GCATATGAAGTTCATTCCCAATCTACGATCGTTGCAGACCGAGGGTTATGACAGCACATG-TGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
196951 CTCGGGCACGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGCTGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC------G--T--C-GGAGA
*
197016 ACCTGACCGGCGGCACTGGGGTTCCGACGATC-GGGGGCTCGGGGGTGTGTGCGCACATGATGTG
119 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC-CGGGGGTGTGT--GCACATGATGTG
197080 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCACTAAACCTCGAGAACTCAC
181 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCACTAAACCTCGAGAACTCAC
*
197145 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAA
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
197210 CAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
* * * * *
197275 TGCAAGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGAGGCCAAAACTCCTTTC-AAAAA
376 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
197339 TATTTAAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAAAACGAGTCGT
441 -ATTTAAAAAAATCC-GAACCGCAAAAA-TTTTGAAAATCATGAAAAATAG-AAAAACGAGTCAT
*
197404 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATG
502 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
197469 GCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGACCCACGGCTT
567 GCATTGGCATGCAGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTT
* * ** * * *
197534 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCTCGCCTGCCCAACCGCTCATTTCAT-TGAT
632 GCGCATCCCGTCTCTCTGGCTGGAGTAGT---C-CTCGCCAGCCCGCCCGCTCGTTTCGTCAG-T
*
197598 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
692 TG-GTTAGGCATAC-GAGTTCATTCCCAGTCTAAG
197633 CATACGTAGT
Statistics
Matches: 1440, Mismatches: 144, Indels: 76
0.87 0.09 0.05
Matches are distributed among these distances:
882 1 0.00
883 76 0.05
884 212 0.15
885 1 0.00
886 81 0.06
887 164 0.11
888 345 0.24
889 2 0.00
891 1 0.00
892 13 0.01
893 5 0.00
894 247 0.17
895 84 0.06
896 155 0.11
897 1 0.00
903 2 0.00
904 48 0.03
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (882 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGACGATCGGGGGGCCGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCTTTATCCCTCACTAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCG
AACCGCAAAAATTTTGAAAATCATGAAAAATAGAAAAACGAGTCATCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CTGGAGTAGTCCTCGCCAGCCCGCCCGCTCGTTTCGTCAGTTGGTTAGGCATACGAGTTCATTCC
CAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGCAGAGTGGGACCC
GACCGATCCCCGGCTTGCGCATCCCGACCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTG
GGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:196890 original size:26 final size:26
Alignment explanation
Indices: 196861--196911 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
196851 GTTAACTTAG
* *
196861 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
196887 GCATATGAAGTTCATTCCCAATCTA
1 GCATACGAAGTTCATTCCCAATCTA
196912 CGATCGTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:197637 original size:26 final size:26
Alignment explanation
Indices: 197606--197658 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
197596 ATTGACTTAG
197606 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
197632 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
197658 G
1 G
197659 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:198331 original size:12 final size:12
Alignment explanation
Indices: 198314--198344 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
198304 TGCCCGTCCA
198314 CCCGCTCGCCCG
1 CCCGCTCGCCCG
*
198326 CCCGCTCGTCCG
1 CCCGCTCGCCCG
198338 CCCGCTC
1 CCCGCTC
198345 ATTTCATCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.65, G:0.23, T:0.13
Consensus pattern (12 bp):
CCCGCTCGCCCG
Found at i:198717 original size:26 final size:26
Alignment explanation
Indices: 198680--198732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
198670 GTTAACTTAG
* *
198680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
198706 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
198732 G
1 G
198733 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:199598 original size:26 final size:26
Alignment explanation
Indices: 199568--199620 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
199558 GTTGACTTAG
199568 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
199594 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
199620 G
1 G
199621 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:200806 original size:26 final size:26
Alignment explanation
Indices: 200769--200820 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
200759 GTTGACTTAG
*
200769 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
200795 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
200821 TATCGAACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:201700 original size:26 final size:26
Alignment explanation
Indices: 201664--201716 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
201654 GTTGACTTAC
201664 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
201690 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
201716 G
1 G
201717 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:205080 original size:26 final size:26
Alignment explanation
Indices: 205044--205122 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
205034 GTTCACTTAG
*
205044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTTATTCCCAGTCTAA
*
205070 GCATACGGAGTTTATTTCCAGTCTAA
1 GCATACGGAGTTTATTCCCAGTCTAA
*
205096 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATTCCCAGTCTAA
205122 G
1 G
205123 ATCGGACCGG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTTATTCCCAGTCTAA
Found at i:206907 original size:26 final size:26
Alignment explanation
Indices: 206867--206949 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
206857 GTGGGTTGAC
*
206867 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
206893 CTAAGCATACAGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
* *
206919 CTAAGCATACAGAGTTCATTCCTAAT
1 CTAAGCATACAGAGTTCATTCCCAGT
206945 CTAAG
1 CTAAG
206950 ATCAGACCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGT
Found at i:207295 original size:912 final size:912
Alignment explanation
Indices: 205978--209505 Score: 5213
Period size: 912 Copynumber: 3.9 Consensus size: 912
205968 GTTGACTTAG
* * ** * * ***
205978 GCATAC-GAAGTTGATTCCCATTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATTGGA
1 GCATACAG-AGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGA
* * *
206042 CCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
65 TCGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* ** * * * * * *
206107 GCACCATCGTCGGAGCATCGTTGAAGAACCTGATCGACGGCATTAGGGTTTCGACGA-CCGGGGG
130 GAACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGG
* * *
206171 GGTCGGGGGGGGTGTAGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATT-GCCCCC
195 GGT--------GTG-CGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
206235 TATCCCTCATCAAACCTCGAGAACTCATAGCCCCTTCAAGAGCATTTCAGATTTTACAGGTTTGC
251 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
206300 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTAC
316 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* *
206365 ACTTCGAGTTTATAGCTG-AATTGTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCA
381 ACTTCGAGTTTTTAGCTGAAATT-TTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCA
* ** * * *
206429 AGTTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
444 AGTTTGGGGCCAAAACTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAA
* * *
206494 ATCATGAAAAATAGAAAATGAGTCATCTCGCCATGAAACTTGACGTGAAGGCTT-AGGGACCATT
509 ATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
206558 GTATGAATTTACAAGCCCTAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
574 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
206623 CCTACCACCCTATCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGC
639 CCTACCACCCTATCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGC
206688 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
704 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
*
206753 GAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGAATC
769 GACGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGAATC
*
206818 CCGCCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTT
834 CTGCCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTT
206883 CATTCCCAGTCTAA
899 CATTCCCAGTCTAA
206897 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGAT
* *
206962 CGAGGGTTGTGGCAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGG
66 CGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
207027 AACCATCACCGGAGCATCGTCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCAGGGGG
131 AACCATCACCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCAGGGGG
207091 GGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
195 GGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
207156 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
207221 CCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGATT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
207286 TTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
390 TTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
207351 AAAACTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
455 AAAACTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
207416 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
520 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
207481 CAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
585 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * * ** *
207546 ATCGATCTATGGCTTCCGCATCCCGTCTCCCTGGAAGACGTAGTGCCCGCCCGCCCGCACGTTTC
650 ATCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCGTTTC
* *
207611 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAACGGTTGTGG
715 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTGTGG
* * ** * *** * **
207676 TAGAAGGATCGATAGCACGTCA-AGGGGGACCCAACCGATCCCTGGCTTGCTCATCCTGCCCCTC
780 CAGTAGGATCGGCAGCACGT-AGA-GGGGACTCGGTCGATCCCTGGCATGCGAATCCTGCCCCTC
* * * * * *
207740 TGGCCGGCTGAGC-GCTCGCACGCTCGTTTCATGGGTTGACTTAGGCAGACGGAGTTCATTCCCA
843 TAGCCGGCTGAGCACCT-GCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCATTCCCA
207804 GTCTAA
907 GTCTAA
* *
207810 GCATACGGAGTTCA-T-----TC----C---C--AG-----T-CT-A---AA-ATCAGACCGGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGAT
*** * * * **
207849 CGAGGGTTCCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCATCGGGG
66 CGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * **
207914 CACCATCACCGGAGCTTCGTCGGAGAACCTGACCGTCGGCATTGGGGTTCTAGCGATCGGGGGGG
131 AACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC---CGA-C----GAT
* * * *
207979 CCGGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTA
188 CAGGGGGGGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
208044 TCCCTCATCAAACCTTGAGAACTCACACCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTG
253 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
208109 CCAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
318 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
208174 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGT
383 TTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGT
* * ** ** * **
208239 TTGAGACC-AAACTTCCTTCTGAAAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAAT
447 TTGGGGCCAAAAC-TCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAAT
* * * * *
208303 CGTGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTAT
511 CATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* ** * *
208368 ACGAATTTACAAGCCATAGAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCTAC
576 ATGAATTTACAAGCCATA-AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* ** * * * * *
208433 CTACCATCCTATGGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAATGCCCGCCCGCC
640 CTACCACCCTATCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCC
208498 CGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG
705 CG----CTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAG
*
208563 ACCGAGGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGA
766 ACCGACGGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGA
208628 ATCCTGCCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGA
831 ATCCTGCCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGA
208693 GTTCATTCCCAGTCTAA
896 GTTCATTCCCAGTCTAA
208710 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGAT
1 GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGAT
* *
208775 CGAGGGTTGTGGCAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGG
66 CGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
*
208840 AACCATCACCAGAGCATCGTCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCAGGGGG
131 AACCATCACCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATCAGGGGG
208904 GGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
195 GGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
208969 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
260 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
* * *
209034 CCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGATT
325 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
209099 TTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
390 TTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC
209164 AAAACTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
455 AAAACTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAA
209229 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
520 TAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
209294 CAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
585 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
209359 ATCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCGTTTC
650 ATCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCGTTTC
* *
209424 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-GAGACCAAACCGACGGTTGCG
715 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG-GACCAGACCGACGGTTGTG
* * *
209488 GCAGCAAGATCAGCAGCA
779 GCAGTAGGATCGGCAGCA
209506 TGATGTGCAA
Statistics
Matches: 2327, Mismatches: 226, Indels: 119
0.87 0.08 0.04
Matches are distributed among these distances:
887 112 0.05
888 2 0.00
890 3 0.00
891 2 0.00
892 2 0.00
893 1 0.00
895 223 0.10
896 154 0.07
897 97 0.04
898 2 0.00
900 109 0.05
901 89 0.04
903 1 0.00
906 2 0.00
907 2 0.00
910 1 0.00
911 175 0.08
912 467 0.20
913 112 0.05
915 2 0.00
916 100 0.04
917 154 0.07
918 224 0.10
919 160 0.07
920 11 0.00
921 2 0.00
922 2 0.00
923 3 0.00
925 2 0.00
926 111 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (912 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGAT
CGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
AACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCAGGGGGG
GTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
TTTAGCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCA
AAACTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCAATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGACGGTTGTGGC
AGTAGGATCGGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGAATCCTGCCCCTCTAG
CCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCATTCCCAGTCT
AA
Found at i:208720 original size:26 final size:26
Alignment explanation
Indices: 208680--208762 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
208670 GTGGGTTGAC
*
208680 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
208706 CTAAGCATACAGAGTTCATTCCCAGT
1 CTAAGCATACAGAGTTCATTCCCAGT
* *
208732 CTAAGCATACAGAGTTCATTCCTAAT
1 CTAAGCATACAGAGTTCATTCCCAGT
208758 CTAAG
1 CTAAG
208763 ATCAGACCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAGT
Found at i:209068 original size:918 final size:915
Alignment explanation
Indices: 207791--209505 Score: 2650
Period size: 918 Copynumber: 1.9 Consensus size: 915
207781 TAGGCAGACG
* * *
207791 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGATCGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAAATCAGACCAGATCGAGGGT
* * * *
207856 TCCAGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCCTCATCGGGGCACCATC
66 TCCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCCTCACCGGGGAACCATC
* * * *
207921 ACCGGAGCTTCGTCGGAGAACCTGACCGTCGGCATTGGGGTTCTAGCGATCGGGGGGGCCGGGGG
131 ACCAGAGCATCGTCGGAGAACCTGACCGTCGGCATTGGGGTTC-A-CGATC---GGAGCAGGGGG
* *
207986 GGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCA
191 GGTGTGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCA
*
208051 TCAAACCTTGAGAACTCACACCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAG
256 TCAAACCTCGAGAACTCACACCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
208116 CCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
321 CCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGT
* *
208181 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGTTTGAGAC
386 TTTTAGCTGAAATTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGAGAC
** ** * * *
208246 C-AAACTTCCTTCTGAAAAAATTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCGTGAAA
450 CAAAAC-TCCCCCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAA
*
208310 AATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTATACGAATT
514 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTATACGAATT
** * *
208375 TACAAGCCATAGAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCTACCTACCAT
579 TACAAGCCATA-AAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
** *
208440 CCTATGGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAATGCCCGCCCGCCCGCCCAC
643 CCTATCAATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAATGCCCGCCCGCCCG----C
* *
208505 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG-GACCAGACCGAG
704 TCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-GAGACCAAACCGAC
* * * *
208569 GGTTGTGGCAGTAGGATCGGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGAATCCTG
768 GGTTGCGGCAGCAAGATCAGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGAATCCTG
208634 CCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCAT
833 CCCCTCTAGCCGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCAT
208699 TCCCAGTCTAAGCATACA
898 TCCCAGTCTAAGCATACA
* *
208717 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGATCGAGGGT
1 GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAAATCAGACCAGATCGAGGGT
*** * * **
208782 TGTGGCAGCAGATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGAACCATC
66 TCCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCCTCACCGGGGAACCATC
*
208847 ACCAGAGCATCGTCGGAGAACCTGACCAG-CGGCATTGGGGTTC-CGA-C-GATCAGGGGGGGTG
131 ACCAGAGCATCGTCGGAGAACCTGACC-GTCGGCATTGGGGTTCACGATCGGAGCAGGGGGGGTG
*
208908 TGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
195 TGCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAA
* * *
208973 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGT
260 ACCTCGAGAACTCACACCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
209038 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGATTTTTT
325 TAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* *
209103 AGCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
390 AGCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGAGACCAAAA
*
209168 CTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
455 CTCCCCCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGA
* * * *
209233 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
520 AAACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTATACGAATTTACAAG
* *
209298 CCATAAAAATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCA
585 CCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCA
* * * *
209363 ATCGACGGCTTGCGCATCCCGTCTCTCTGGCTGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCG
650 ATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCGTCG
209428 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCAAACCGACGGTTGCGGCAGC
715 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCAAACCGACGGTTGCGGCAGC
209493 AAGATCAGCAGCA
780 AAGATCAGCAGCA
209506 TGATGTGCAA
Statistics
Matches: 718, Mismatches: 68, Indels: 20
0.89 0.08 0.02
Matches are distributed among these distances:
911 1 0.00
912 82 0.11
916 100 0.14
917 154 0.21
918 223 0.31
922 1 0.00
923 3 0.00
926 153 0.21
927 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (915 bp):
GAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAAATCAGACCAGATCGAGGGT
TCCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCCTCACCGGGGAACCATC
ACCAGAGCATCGTCGGAGAACCTGACCGTCGGCATTGGGGTTCACGATCGGAGCAGGGGGGGTGT
GCGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACCCCCATAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
GCTGAAATTTTTTGTGCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGAGACCAAAAC
TCCCCCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGAGAAGGCTTAAGGGACCATTATACGAATTTACAAGC
CATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAA
TCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAATGCCCGCCCGCCCGCTCGTTTCGTCGG
TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATGAGACCAAACCGACGGTTGCGGCAGCA
AGATCAGCAGCACGTAGAGGGGACTCGGTCGATCCCTGGCATGCGAATCCTGCCCCTCTAGCCGG
CTGAGCACCTGCACGCTCGTTTCGTGGGTTGACCTAAGCATACGGAGTTCATTCCCAGTCTAAGC
ATACA
Found at i:210237 original size:25 final size:26
Alignment explanation
Indices: 210191--210241 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
210181 TGACTTAGGC
210191 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
*
210217 ATACGGAGTTC-TTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
210242 TCGGACCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:211972 original size:26 final size:26
Alignment explanation
Indices: 211942--211991 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
211932 GACTTAGGCC
*
211942 TACGGAGTTCATTCCTAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
211968 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
211992 ATCGGACAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:212878 original size:26 final size:26
Alignment explanation
Indices: 212842--212920 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
212832 GTTGACTTAG
212842 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
212868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
212894 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
212920 G
1 G
212921 ATCGGATCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:216112 original size:26 final size:26
Alignment explanation
Indices: 216082--216134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
216072 GTTGACTTAG
*
216082 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
216108 GCATACGGAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
216134 G
1 G
216135 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:216122 original size:898 final size:898
Alignment explanation
Indices: 214363--220767 Score: 6048
Period size: 904 Copynumber: 6.9 Consensus size: 898
214353 GGGTTACAGC
* * **
214363 AGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* *
214428 GCATAGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGC
66 GCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGC
* *
214493 GCACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACC
130 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
214558 TCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAA
195 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
**
214623 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTTTTTAGC
260 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
214688 TGAATTTTTTTATGCATGCCGACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACT
325 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* ** * *
214753 CCTTCC-AAAGAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATAGTGAAAAATAGAA
390 CCTTCCGAAA-AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGAA
*
214817 AACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
454 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
214882 CATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGA
519 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
214947 TCCACGGCTTGCGCATCTCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCG
584 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * *
215012 TCGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGAGCGAGGGTTACGGT
649 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGT
* ** * * * *
215077 AGTAGGATCGGTAGCACATAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTG
714 AGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTG
** * ** * * *
215142 GCCTACTGAACGCTTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGCTCATTCCCAGTC
779 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * **
215207 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTC-GACCGAGGGTTGCAAT
844 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCAGACCGAGGGTTGCGGT
* * * *
215262 AGCACATGCTGGG-TTGGGCATCTGCTGGTGTCGCATTTTTGTTCGTCGGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * *
215326 GCATCGCAAGAGAACCCGACCGACGGCATTGAGGTTCTGGCGATCGGGGGGGTCGGGGGGTGTGC
66 GCATCGC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGC
* ** * *
215391 ACACATGATGTGCGATGGGTGCTTATACTTGGCCCTTTTATTGGCCCTCTATCCCTCATCAAACC
130 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
215456 TTGAGAACTCACACCTCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTAA
195 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
215521 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATGCATTTCGGGTTTTTGGC
260 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * *
215586 TAAATTTTTTTGTGAATGCCAACAAAAATACAAGGAACACGGCTACCAAGTTTGGGGCCAAAACT
325 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
** * *
215651 CCTTTTGAAAAAATTTAAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAAAA
390 CCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGAA
* * *
215715 AATGAGTCGTCTTGCCATGAAGCTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGC
454 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
215780 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCAA
519 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* ** *
215845 TCCACAGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTCGCTTCG
584 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * *
215910 TCGGTTGGCTTAGGCATACGAAGTTCATTCCTC-GTATAAGATCAGACCGGACCAAGGGTTATGG
649 TCGGTTGGCTTAGGCATACGAAGTTCATTCC-CAGTCTAAGATCAGACCGGACCGAGGGTTACGG
* * * *
215974 CAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGCTGATCCCCAGCTTGCGCATCCCGCCACTCT
713 TAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCT
** *
216039 GGCCAACTGACCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
778 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * **
216104 GTAAGCATACGGAGTTCATTCCGAGTCTAAGATCAGACCAGACTGAGGGTTGTGAC
843 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGT
* * * *
216160 AGGACATGCTGGGTTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* *
216225 GCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGGGG
66 GCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC----G-GGGGG
** * ** *
216290 TGTGCGCACATGATGTGCGATGCATGCTGGTATTTCACCCTGATATTGGCCCCCCTATCCCTCAT
125 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCAT
* ** * *
216355 CAAACCTCGACAACTCACATGCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGC
189 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
216420 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTT
254 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
216485 TTTAGCTGAATATTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCC
319 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
216550 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA-TCATGAAAA
384 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGA-GAAAA
*
216614 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
448 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
216679 ACAAGCCATAAAAA-GGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTGCCAAC
513 ACAAGCCATAAAAATGG-CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
216743 CTATCGATCCAGGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
577 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
* * *
216808 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGG
642 CGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * ** * *
216872 TTGCGGCAACAGGATTGGTATTACGCAGAGGGGGACCCGGTTGATCCCTGGCTTGCGCATCCCGC
707 TTACGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGC
* * * *
216937 CCCTCTGGCTGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGGATACGGAGTTCATT
772 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
** * *
217002 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACAAAGGTTTACGGT
837 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGT
* * *
217064 AGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * *
217129 GCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATC-GGGGGACCGGGGGGGTGTG
66 GCATC-GCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTG
* * *
217193 CTCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAC
129 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
217258 CTCAAGAACTC-CACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTCGCCATTA
194 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
217322 AAGTATCTTAAATAGGGACACTTATTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
259 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
217386 CTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTATC-AGTTTGGGACCAAAAC
324 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
217450 TCCTTCCGAAAAAATTTTAAAAAATCCCGCAA-TGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
389 TCCTTCCGAAAAAATTTTAAAAAATCTCG-AACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGA
* * * *
217514 AAACGAGTCGCCTTGCCAGGAAACTT-ATTGTGAAGGCTTAAGGGTCCATTGTATGAATTTACAA
453 AAACGAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
217578 GCCATAAAAATGGCATCGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
517 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
** *
217643 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTCCTTT
582 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTT
* *
217708 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTTAC
647 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTAC
* * * * * * *
217772 GGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGCGCATCCCACCCCT
711 GGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
217837 CTGGCCGGCTGAGCGCCCGCACGCTTGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCCCC
776 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
217902 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGGTTGTGACAGCAGT
841 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGA-GGGT-TG-C-G--GT
* * * * * * ***
217966 ATCGACAGCACGCAGAGGGGGAC-CCGGC-TGATCCCCGGCTTGCGCATCCCGCCTCTTTGGCCG
1 A--G-CA-CATGC----TGGG-CTCGGGCATG-T-----GC-TG-G--TGCCGCATTTTTCTTCG
* * ** * ** *
218029 GCTGAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCAT-ACGGAGTTCATTCCCAGTCTA
47 TC-G-G-G---GCAC-CATCG--TC----G--G----A-GCATCGCGGAGAACCTGACC-GAC--
* * ** * *** *** * * * * *
218092 AGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCACATGCTGG
89 GGCAT--TG-G--GGTTCC--GGC---GATC-GGGGGGGCCGGGGGGTG-TGC-GCACATGATGT
* * * ** * * * * * * * *
218157 GC-TTGGGCATATGCTGGTGC--CGCATTTTTCTTCGTCGGGGCACC-AT-CGTCGGAGC-ATCA
141 GCGATGGG----TGCTGGTACTTGGCCCTTAT-AT--T--GGCCCCCTATCCCTC--ATCAAACC
* * * *** ** * ***** * **
218216 TCGGATAACCTGAC-CGGCGGCATTGCTGTTCCGA-CGATCGGGGGGGCCAGGAGGGGGTG-TAC
195 TC-GAGAA-CTCACAC--C--C---CCT-TAAAGAGC-ATTTGAGATTTTA-CA-GGTTTGCT--
* * ** * * * * * * * **
218278 GCACATGATGTGCGA-T-GGGTG-CTGGTACT-TGG-CCCTTATATTGGCCCCCTATTCCTCATC
245 GC-CA-G-T-AGCCATTAAAGTGTCT-GAAATGGGGACACTT-T-TT-----TCAAATGGTCA-C
* * ** *
218338 -AAACCTTGAGAACTCACACCCCCTCAAAGAGCATTT-G-AG-ATTTTACAGGTTTGCTGCCAGT
297 AAAATCTT--G---T-ACA---CTTC---GAGTTTTTAGCTGAATTTT-----TTTG-TG-CA-T
** ** * * * ** * *
218399 AGCCATTAAAGTGTCTGCAATGGGGA-CACTTTTTTCAA--AT-GGTCGCAAAATCTTGTACACT
342 -GCCAACAAA---AATACAA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CT
* ** ** * **
218460 T-TGATTTTTTAGCTGAATTTTTTTTTTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAG
393 TCCGA------A----AA------AATT---T---TA-AAAAAT-C-TCGAAC-CG--TAAAAAG
* * *
218524 TTTGGGACCAAAAATCCTTCAAAAAAAATTTTAAAAAATCTCGAATCGTAAAATTTTTTGAAATT
430 TTT-----CAAAAA---TT-GAGAAAAA---TAGAAAA---CG-A--------------------
*
218589 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGT
459 -------------------GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
218654 ATGAATTTACAAGCCATAAAAATGGCATTGGAATGTAGAAATATGAAGATGTGCCTAAACCCACC
505 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
218719 TACCACCCCATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTTGTGCCCGCCCTCCC
570 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCC
* * * * *
218784 GTCCGCCCGCTCGTTTCGTCGGTTTGCTTATGCATAC-AGAGTTCATTCCCAGTCTATGATCTGA
631 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * *
218848 CCGGATCGAGGGTTGCAGTAGTAGGATCGGTAGCATGCCGAGAGGTACCCGACCGATCCTCC-GC
695 CCGGACCGAGGGTTACGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGATCC-CCGGC
* * *
218912 TTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCA
759 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
218977 TACGGAGTTCATTCCCAGTCTGAGCATACGGAGTTCATTCCCAGTTTAAGATCGGAT-TGAACCG
824 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCG
* **
219041 CGGGTTGCGAC
888 AGGGTTGCGGT
* * * * * ** *
219052 AGCACATGCTGGGCTCAGGCAAGTGCTGGTACCACATTTTTCTTCATCGGGTTACCATCTTCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* *
219117 GCATCACCGGAGAACCTGACTC-ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGT
66 GCATC-GCGGAGAACCTGAC-CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGT
* * *
219181 GCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAA
128 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
219246 CCTTGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
193 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
219311 AATGTGTCTGAAATGGTGACACCTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTA
258 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * *
219376 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGTCTGGGGCTAAAA
323 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
219441 ATCCTTCCGAAAAAATTTTAAAAAATCTCGAAACGTAAAAGGTTTCAAAAATCGTGAAAAATAAA
388 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGA
219506 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
453 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
219571 CCATAAACATGGCATTGGCATGCGGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCG
518 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
219636 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTTCCGCCCGCTCG
583 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCG
* * * * * * * *
219701 TTTCTTCGGTTGGCTTAGGTATACGGAGTACATTCCTAGTCTAAGATCGGATCGGACTGAGGGTT
644 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
* * * * * * * * * * * *
219766 CCGGTAGAAGTATCAGCAGCACGTAGAGGGGGACTCGACCGGTCCTCGGCTTGCGCATCCCGCCT
709 ACGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCC
* * * * * *
219831 CTTTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACTGAGTTCATTCC
774 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
219896 CAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAATCGGATCGAGGGTTGCGGT
839 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGT
* * * * *
219956 AGCACATGCTAGGATTGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGA
1 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * *
220021 GCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGAGGGGGTCGAGGGGGTGTA
66 GCATC-GCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTG
* *
220086 CGCACATGATGTGCGATGGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAAC
129 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
220151 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
194 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * * *
220216 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATATTTTACAGTTCAAGCTTTTAG
259 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* *
220281 CTGAATGTTTTTGTGCCTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAAC
324 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* *
220345 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAA
389 TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGAA
* * *
220410 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGC
454 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * *
220475 CAGAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
519 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
220540 TCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTACTGCCCGCCTGCCCGCCCACTCGTTTCG
584 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * ** * * * * * *
220605 TCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCTGC
649 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGT
* ** * * *
220670 AGCAAGATCGACAGCACGCAGAGGGGGACCC-GATCGATCCCCGGCTTGTGCATCCCGCCCCACT
714 AGCAGGATCGGTAGCACGCAGAGGGGGACCCGGCT-GATCCCCGGCTTGCGCATCCCGCCCCTCT
*
220734 GGCCGGCTGAGCGCCCGCACGCTTGTTTCATGGG
778 GGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
220768 AGTTCATTCC
Statistics
Matches: 4479, Mismatches: 732, Indels: 590
0.77 0.13 0.10
Matches are distributed among these distances:
894 2 0.00
895 291 0.06
896 244 0.05
897 78 0.02
898 812 0.18
899 299 0.07
900 8 0.00
901 1 0.00
902 3 0.00
903 244 0.05
904 1023 0.23
905 473 0.11
906 5 0.00
909 2 0.00
910 7 0.00
911 1 0.00
915 2 0.00
916 2 0.00
917 1 0.00
919 11 0.00
920 1 0.00
921 1 0.00
922 1 0.00
925 7 0.00
926 1 0.00
927 1 0.00
931 1 0.00
933 1 0.00
936 9 0.00
937 3 0.00
938 4 0.00
939 4 0.00
941 1 0.00
943 1 0.00
944 6 0.00
946 2 0.00
947 7 0.00
949 4 0.00
950 11 0.00
951 10 0.00
952 9 0.00
953 5 0.00
954 7 0.00
955 8 0.00
956 4 0.00
957 6 0.00
958 9 0.00
959 10 0.00
960 1 0.00
961 3 0.00
962 2 0.00
963 2 0.00
964 6 0.00
965 2 0.00
966 3 0.00
967 7 0.00
968 3 0.00
969 4 0.00
970 6 0.00
971 8 0.00
972 7 0.00
973 2 0.00
974 3 0.00
977 2 0.00
978 11 0.00
979 1 0.00
980 1 0.00
981 1 0.00
983 1 0.00
984 3 0.00
986 3 0.00
987 11 0.00
988 2 0.00
989 4 0.00
990 13 0.00
992 12 0.00
993 5 0.00
994 2 0.00
995 8 0.00
996 8 0.00
997 2 0.00
998 2 0.00
999 11 0.00
1000 6 0.00
1001 14 0.00
1002 5 0.00
1003 1 0.00
1004 9 0.00
1005 3 0.00
1006 3 0.00
1007 3 0.00
1008 1 0.00
1011 2 0.00
1012 1 0.00
1013 11 0.00
1015 2 0.00
1016 3 0.00
1017 2 0.00
1018 9 0.00
1019 6 0.00
1020 5 0.00
1021 6 0.00
1022 2 0.00
1023 8 0.00
1024 24 0.01
1025 42 0.01
1026 31 0.01
1027 33 0.01
1028 39 0.01
1029 23 0.01
1030 33 0.01
1031 79 0.02
1032 25 0.01
1033 23 0.01
1034 21 0.00
1035 22 0.00
1036 29 0.01
1037 34 0.01
1038 29 0.01
1039 35 0.01
1040 23 0.01
1041 14 0.00
1042 19 0.00
1043 11 0.00
1044 17 0.00
1045 16 0.00
1046 8 0.00
1047 6 0.00
1048 4 0.00
1049 12 0.00
1050 9 0.00
1051 5 0.00
1052 9 0.00
1053 6 0.00
1054 22 0.00
1055 14 0.00
1056 11 0.00
1057 9 0.00
1058 3 0.00
1059 84 0.02
1060 5 0.00
1061 4 0.00
1062 6 0.00
1063 24 0.01
1065 4 0.00
1066 3 0.00
1067 63 0.01
1068 1 0.00
1069 10 0.00
1071 1 0.00
1072 2 0.00
1073 2 0.00
1077 1 0.00
1078 8 0.00
1079 1 0.00
1082 4 0.00
1083 2 0.00
1084 1 0.00
1086 1 0.00
1088 156 0.03
1089 2 0.00
1090 2 0.00
1091 5 0.00
1092 221 0.05
1093 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
GCATCGCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCG
CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC
GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAG
CAGGATCGGTAGCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGT
Found at i:216692 original size:905 final size:899
Alignment explanation
Indices: 214362--217963 Score: 5051
Period size: 898 Copynumber: 4.0 Consensus size: 899
214352 AGGGTTACAG
* * *
214362 CAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * *
214427 AGCATAGCCGGAGAACCTGACCGACGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
66 AGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
* *
214492 CGCACATGATGTGCGATGGGTCCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAAC
131 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
214557 CTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTA
196 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
**
214622 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTTTTTAG
261 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* * *
214687 CTGAATTTTTTTATGCATGCCGACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAAC
326 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAC
* * **
214752 TCCTTCC-AAAGAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAAT-AGTGAAAAATAG
391 TCCTTCCGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAG
*
214815 AAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
454 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
214880 GCCATAAAAATGGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATC
519 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *** * *
214945 GATCCACGGCTTGCGCATCTCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTT
584 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTCGCTT
* * * * *
215010 CGTCGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGAGCGAGGGTTACG
649 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACG
* * ** * *
215075 GTAGTAGGATCGGTAGCACATAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTC
714 GCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTC
* * ** * * *
215140 TGGCCTACTGAACGCTTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGCTCATTCCCAG
779 TGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
215205 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATTC-GACCGAGGGTTGCAA
844 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCGA
* * * * * *
215261 TAGCACATGCTGGG-TTGGGCATCTGCTGGTGTCGCATTTTTGTTCGTCGGGGCACCATCGTCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
** * * *
215325 AGCATCGCAAGAGAACCCGACCGACGGCATTGAGGTTCTGGCGATCGGGGGGGTCGGGGGGTGTG
66 AGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
* ** * *
215390 CACACATGATGTGCGATGGGTGCTTATACTTGGCCCTTTTATTGGCCCTCTATCCCTCATCAAAC
131 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
215455 CTTGAGAACTCACACCTCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTACCAGTAGCCATTA
196 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
215520 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATGCA-TTTCGGGTTTTTG
261 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT-GAGTTTTTA
* * * * *
215584 GCTAAATTTTTTTGTGAATGCCAACAAAAATACAAGGAACACGGCTACCAAGTTTGGGGCCAAAA
325 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAA
** * * * *
215649 CTCCTTTTGAAAAAATTTAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGA-GAAAAATAA
390 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA-TCATGAAAAATAG
* * *
215713 AAAATGAGTCGTCTTGCCATGAAGCTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAA
454 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
215778 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATC
519 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
215843 AATCCACAGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTCGCTT
584 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTCGCTT
* * *
215908 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTC-GTATAAGATCAGACCGGACCAAGGGTTAT
649 CGTCGGTTGGCTTAGGCATACGAAGTTCATTCC-CAGTCTAAGATCAGACCAGACCAAGGGTTAC
* * * * *
215972 GGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGGCTGATCCCCAGCTTGCGCATCCCGCCACT
713 GGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* *
216037 CTGGCCAACTGACCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
778 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * * *
216102 GTGTAAGCATACGGAGTTCATTCCGAGTCTAAGATCAGACCAGACTGAGGGTTGTGA
843 GTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
* * * * *
216159 CAGGACATGCTGGGTTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGTCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* * * *
216224 AGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGGG
66 AGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGCC----G-GGGG
** * ** *
216289 GTGTGCGCACATGATGTGCGATGCATGCTGGTATTTCACCCTGATATTGGCCCCCCTATCCCTCA
126 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCA
* ** * *
216354 TCAAACCTCGACAACTCACATGCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAG
190 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
*
216419 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACT
255 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
* *
216484 TTTTAGCTGAATATTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGC
320 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGC
*
216549 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAA
385 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
216614 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
450 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
216679 ACAAGCCATAAAAA-GGACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTGCCAAC
515 ACAAGCCATAAAAATGG-CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* **
216743 CTATCGATCCAGGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
579 CTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCT
* *
216808 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA-GG
644 CGCTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGG
* * * ** *** *
216872 TTGCGGCAACAGGATTGGTATTACGCAGAGGGGGACCCGGTTGATCCCTGGCTTGCGCATCCCGC
709 TTACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGC
* * * * *
216937 CCCTCTGGCTGGCTGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGGATACGGAGTTCATT
774 CCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
* * ** * * *
217002 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACAAAGGTTTACGG
839 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
* * *
217063 TAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
* *
217128 AGCATCACCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATC-GGGGGACCGGGGGGGTGT
66 AGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGT
* * *
217192 GCTCTCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAA
130 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
217257 CCTCAAGAACTC-CACCCCCTTAAAGAGCAATTGAGATTTTATAGGTTTGCTGCCAGTCGCCATT
195 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * * *
217321 AAAGTATCTTAAATAGGGACACTTATTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
260 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
* * * *
217385 GCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACATCTATCA-GTTTGGGACCAAAA
325 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAA
* * *
217449 CTCCTTCCGAAAAAATTTTAAAAAATCCCGCAA-TGCAAAAAGTTTCAAAAATCGTGAAAAATAG
390 CTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * *
217513 AAAACGAGTCGCCTTGCCAGGAAACTT-ATTGTGAAGGCTTAAGGGTCCATTGTATGAATTTACA
454 AAAACGAGTCGTCTTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
217577 AGCCATAAAAATGGCATCGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
518 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
*
217642 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTC-CT
583 CGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTCGC-
** **
217706 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTT
647 TTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCAAGGGTT
* * * *
217770 ACGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGCGCATCCCACCC
711 ACGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
217835 CTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCC
776 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * *
217900 CCGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGGTTGTGA
841 CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
217959 CAGCA
1 CAGCA
217964 GTATCGACAG
Statistics
Matches: 2380, Mismatches: 300, Indels: 49
0.87 0.11 0.02
Matches are distributed among these distances:
894 2 0.00
895 294 0.12
896 252 0.11
897 74 0.03
898 808 0.34
899 153 0.06
900 3 0.00
903 8 0.00
904 312 0.13
905 471 0.20
906 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
AGCATCGCCGGAGAACCTGACCGACGGCATTGAGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCTCGCTTCG
TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGC
AGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA
Found at i:217018 original size:26 final size:26
Alignment explanation
Indices: 216988--217038 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
216978 TGACTTAGGG
216988 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
217014 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
217039 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:217918 original size:26 final size:26
Alignment explanation
Indices: 217882--217934 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
217872 GTTAACTTAG
*
217882 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
217908 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
217934 G
1 G
217935 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:218035 original size:185 final size:185
Alignment explanation
Indices: 217723--218130 Score: 600
Period size: 185 Copynumber: 2.2 Consensus size: 185
217713 GTTGGCTTAG
* * * * * * *
217723 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACTGGACTGAGGGTTACGGCAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGGTTACGACAGCAGGATCGACA
*
217788 GCACGCAGAGGGGGACCCGACCGATCCCTGGCTCGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTCGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* *
217853 CCGCACGCTTGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCCCCGTCTAA
131 CCGCACGCTCGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
217908 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGGTTGTGACAGCAGTATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGGTTACGACAGCAGGATCGACA
* * * * * *
217973 GCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCTCTTTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTCGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* *
218038 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
218093 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
218131 TTGAGGGTTG
Statistics
Matches: 199, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
185 199 1.00
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGGTTACGACAGCAGGATCGACA
GCACGCAGAGGGGGACCCGACCGATCCCCGGCTCGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCCTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:218103 original size:26 final size:26
Alignment explanation
Indices: 218067--218119 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
218057 GTTGACTTAG
*
218067 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
218093 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
218119 G
1 G
218120 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:219665 original size:904 final size:895
Alignment explanation
Indices: 217908--224924 Score: 8799
Period size: 904 Copynumber: 7.9 Consensus size: 895
217898 CCCCGTCTAA
* * * ** * *
217908 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGACGGTTGTGACAGCAGTATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * *
217973 GCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCCCGCCTCTTTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
218038 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAG
* * * ** * *
218103 TTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATA
195 TTCATTCCCAGTCTAAGATCGGA-CGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * *
218168 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGATAACCTGACCGG
259 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGA
** * *
218233 CGGCATTGCTGTTCCGACGATCGGGGGGGCCAGGAGGGGGTGTACGCACATGATGTGCGATGGGT
324 CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-GGGGGTGTGCGCACATGATGTGTGATGGGT
* *
218298 GCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACACCCCCTC
387 GCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
*
218363 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGCAATGGGGACAC
451 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
218428 TTTTTTCAAATGGTCGCAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTTTTGCATGC
516 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGC
* * **
218493 CTACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCAAAAAAAATTTTAA
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* ** ** * *
218558 AAAATCTCGAATCGTAAAATTTTTTGAAATTCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
645 AAAATCTCGAAACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
218623 AACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAT
710 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
218688 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGCATCCCA
775 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
218753 TCTCTCTGGCCGGCGTTGTGCCCGCCCTCCCGTCCGCCCGCTCGTTTCGTCGGTTTGCTTAT
840 TCTCTCTGGCCGGCGTAGTGCCCG----CCC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
218815 GCATACAGAGTTCATTCCCAGTCTATGATCTGACCGGATCGAGGGTTGCAGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * *
218880 GCATGCCGAGAGGTACCCGACCGATCCTCCGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCC-CCGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
218945 CCGCACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAG
* * * * * *
219010 TTCATTCCCAGTTTAAGATCGGATTGAACCGCGGGTTGCGACAGCACATGCTGGGCTCAGGCAAG
195 TTCATTCCCAGTCTAAGATCGGA-CGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * ** * *
219075 TGCTGGTACCACATTTTTCTTCATCGGGTTACCATCTTCGGAGCATCACCGGAGAACCTGACTC-
259 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAC-CG
219139 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
323 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
*
219204 CTAGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
388 CT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
* * * *
219269 AGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGTGACACC
452 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
219334 TTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
517 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
219399 AAAAAAATACAAGGATCACGTCTACAAAGTCTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAAA
582 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* *
219464 AATCTCGAAACGTAAAAGGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
647 AATCTCGAAACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
219529 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCATTGGCATGC
712 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
219594 GGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
777 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
219659 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCTTCCGCCCGCTCGTTTCTTCGGTTGGCTTAG
842 TCTCTGGCCGGCGTAGT----GCCCGCCC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * * * *
219719 GTATACGGAGTACATTCCTAGTCTAAGATCGGATCGGACTGAGGGTTCCGGTAGAAGTATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * *
219784 GCACGTAGAGGGGGACTCGACCGGTCCTCGGCTTGCGCATCCCGCCTCTTTGGTCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCC-CCGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * *
219849 CCGCACGCTCATTTCGTGAGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGCATACAGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAG
* * * * * * * *
219914 TTCATTCCTAGTCTAAGATCGAATCGGATCGAGGGTTGCGGTAGCACATGCTAGGATTGGGCATG
195 TTCATTCCCAGTCTAAGATCGGA-CGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
219979 TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGG
259 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGA
* * * * * *
220044 CGGCATTGGGGTTCCGGCGATCGAGGGGGTCGAGGGGGTGTACGCACATGATGTGCGATGGGTGC
324 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGC
*
220109 TGTTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAA
389 TG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
*
220174 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
453 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * * * * *
220239 TTTTCAAATGGTAACAAAATATTTTACAGTTCAAGCTTTTAGCTGAATGTTTTTGTGCCTGCCAA
518 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
220304 CAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
583 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAA
* * * *
220368 ATCTCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
648 ATCTCGAAACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
220433 TTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCAGAAAAATGGCATTGGCACGTA
713 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
*
220498 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
778 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
220563 CTCTGGTCGGCGTACTGCCCGCCTGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
843 CTCTGGCCGGCGTAGTGCCCGCC--CCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * * * * *
220618 GCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCTGCAGCAAGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* *
220683 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCACTGGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCGACCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
220748 CCGCACG--C---T--T--G-T---TT---CAT-GGGAGTTCATTCCCAA--T---C-TA---AG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAG
* * * *
220787 ---A-T--C-G-----GATC-G--G-ACTGAGGTTTACGACAGCACATGCTGGGCTCGGGCATGT
195 TTCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * **
220836 GCTGGTGCCACATTTTTGTTCATCGGGGCACCA---TC---GC--CA---GAGAATTTGACCGAC
260 GCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGAC
* * * * * * *
220890 GACATTGGGGTTCCGGCGATCGGGGGGCCCGGGGGGGTGTACGCGCATAATGTGTGATGAGTGCT
325 GGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* * * ** *
220955 GGTACTTGGCCCTCATATTGGGCCCCTATCCCTTATCAAACCACGAGAACTCACACCCTCTTAAA
390 -GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* *
221020 GAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
454 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
221085 TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCTTGCCAAA
519 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** * * * *
221150 AAAAATACAAGGATCTTGCCTACCAAGGTTGGGGCCAAAACTCCTTCCGAAGAAATTTTAAAAAA
584 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* * *
221215 T-TCCG-AACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATTAAA
649 TCT-CGAAAC-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
221278 CTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAAATGGCATGGGTATG
712 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATG
* *
221343 TAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGCATCCCGT
776 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
221408 CTC-CTTGGCCGACGTAGT----G--CCAGCCCGCTCGTTTCGTCGGATGGCTTAG
841 CTCTC-TGGCCGGCGTAGTGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * ** * *
221457 GCATGCGAAATTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTATGGTAGTAGGATTGAG-
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG-GC
* * * *
221521 AGCACGCA-ATGGGGGACCCGATCGATCCTCGACTTGTGCATCCCGCCCCTCTAGCCGGTTGAGC
65 AGCACGCAGA-GGGGGACCCGACCGATCCCCG-CTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
221585 GCCCAG-ACGCTCATTTCATGGGTTCACTTAGGCATACGGAGTTCACTCCCAATCTAAGCATACG
128 GCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACG
* *
221649 GAGTACATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
192 GAGTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
221714 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
256 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAC
* * * *
221779 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGCAGTATGCACACAAGATGTGTGATGA
321 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGTGATG-
*
221844 GG-GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
384 GGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* *
221908 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTCTAAAATGGGGA
448 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
221973 CACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTCTAGCTGAATTTTTTTTTGCTT
513 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
222038 GCCAACAAAAATACAAGGATTACGCCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAGAAATTTT
578 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT
* * * * *
222103 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCG
643 AAAAAATCTCGAAACGTAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
222168 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
707 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
222233 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGTGCATC
772 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
222298 CCGTCTCTCTGGTCAGCGTAGT----G--CCAGCCCGCTCGTTTCGTCGATTGGCTTAG
837 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * ** **
222351 GCATACGAAATTCATTCCCAGTGTAAGATTAGACCGAACTGAGGGTTACCATAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * * * * * *
222416 GCATGCA-ACAGCGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGGCAGCTGAACG
66 GCACGCAGA-GGGGGACCCGACCGATCC-CCGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * **
222480 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAGCATACGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGA
* * * * * * * *
222545 ATTCATTCCCTGTCTAAGATTGGGCCAGACCGAGGGTTGTGGCAGAACATGCTGGGCTCAGGCAT
194 GTTCATTCCCAGTCTAAGATCGGACGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * * * *
222610 TTGCTGGTACCGCATTTTTCTTCGTCGGGGCAGCATCGCCGGAACATCGTCGGAGAACCTGACTG
258 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCG
* * * *
222675 ACGGCATTTGGGTTCCGGA-TATCGGGGGGGTC-GGGGGGTGTCCGCAC---A----TGAT--GT
323 ACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGT
* *
222729 G--GTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACATTGAGAACTCACACCCCCTTA
387 GCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
*
222792 AAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
452 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
222857 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTGTATGCATGCCA
517 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
222922 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTCCCGAAAAAATTTTAAAA
582 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAA
* * * *
222987 AATCCCG-AACGGTAAAAAGTTTCAAAAATCATAAAAAATAGAGAACGAGTCGTCTTGCCATGAA
647 AATCTCGAAAC-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
223051 ACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATG
711 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
223116 CAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATGCACGGCTTGCGCATCCCAT
776 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
223181 CTCTCTCGCCGGCGTAGTGCCCGCCCGCCCGCCCGGCCGTTCGATTCATCGGTTGGCTTAG
841 CTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGCCC-G-C--TCGTTTCGTCGGTTGGCTTAG
* * * *
223242 GCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * *
223307 GCACGTAGAGGGGGACCCGGCTGATCCCCGACTTGTGCAT-CCGACCCCTCTGGCCGGCTGAGCG
66 GCACGCAGAGGGGGACCCGACCGATCCCCG-CTTGTGCATCCCG-CCCCTCTGGCCGGCTGAGCG
** * * *
223371 CCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCTTACGAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGA
* * *
223436 GTTCATTCCCAGTCTAAGATCAGG-CTAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCA
194 GTTCATTCCCAGTCTAAGATC-GGACGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *** * * *
223500 TTTGCTGGTGTCATTTTTTTCTTCACCGGGGCACCATCG-CGGGTGCATCGTCGGAGAACCTGAC
257 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCATCGGAGAACCTGAC
* ** * *
223564 CGACAGCATTGGGGTTCCAGGGGATC-GGGGGG-C-AGGGGGTGTCCGCAC---A----TGAT--
321 CGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGG
* * *
223617 GTG--GTACTTGGCCTTTATATTGGCCCCCTATCCCACATCAAACCTGGAGAACTCACACCCCCT
385 GTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* *
223680 TAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
223745 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTGTGTGCATGC
515 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
223810 CAA-AAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAAA
580 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAA
* * * *
223874 AAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAGAACGAGTCGTCTTGCCATGA
645 AAAATCTCGAAACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
223939 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCAT
710 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
224004 GCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATACATGGCTTGCGCATCCCA
775 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
224069 TCTCTCTGGCCGGCGTAGTGCCCG--CCCGCCCGTTCGTTTCGTCGGTTGGCTTAG
840 TCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * *
224123 GCATACAGAGTTGATTCTTAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * *
224188 GCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAACGC
66 GCACGCAGAGGGGGACCCGACCGATCCCC-GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * **
224253 CCGCACGCTCGTTTCGTGGGTCT-ACTTAGGCATATGGAGTTCATTCCCAGTCGAAGCATACAAA
130 CCGCACGCTCGTTTCGTGGGT-TGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGA
* * * * *
224317 GTTCATTCCCAATCTAGGATCAGATC-AGACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
194 GTTCATTCCCAGTCTAAGATCGGA-CGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * *** * *
224381 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGGGAACATGACC
257 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACC
* * * * *
224446 -AGTGGAATTGGGGTTCCGACGATCGAGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGG
322 GA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
* * *
224510 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCCGT
386 TGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* *
224575 TAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACA
450 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
224640 CTTTTTTCAAATGGTCACAAAATCCTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCACG
515 CTTTTTTCAAATGGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
224705 CTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACTCCTTCCAAAAAAATTTTA
579 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
*
224770 AAAAATCTCG-AAC-TACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCA
644 AAAAATCTCGAAACGT--AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
224833 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
707 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
224898 CATGCAGAAATATGAAGATGTGCCTAA
772 CATGCAGAAATATGAAGATGTGCCTAA
224925 GATCAGACCG
Statistics
Matches: 5345, Mismatches: 633, Indels: 274
0.85 0.10 0.04
Matches are distributed among these distances:
838 2 0.00
839 137 0.03
840 1 0.00
841 1 0.00
843 1 0.00
844 1 0.00
845 273 0.05
846 129 0.02
847 91 0.02
848 3 0.00
849 1 0.00
850 2 0.00
852 2 0.00
853 1 0.00
855 3 0.00
856 73 0.01
857 1 0.00
858 1 0.00
861 5 0.00
862 2 0.00
865 2 0.00
866 1 0.00
868 1 0.00
869 2 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
876 2 0.00
877 5 0.00
878 1 0.00
879 176 0.03
880 267 0.05
881 307 0.06
882 87 0.02
883 18 0.00
884 1 0.00
885 13 0.00
886 3 0.00
887 6 0.00
888 3 0.00
889 267 0.05
890 221 0.04
891 294 0.06
892 17 0.00
893 49 0.01
894 693 0.13
895 228 0.04
896 42 0.01
897 198 0.04
898 1 0.00
899 145 0.03
901 1 0.00
903 227 0.04
904 828 0.15
905 195 0.04
906 2 0.00
907 299 0.06
908 8 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCCGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACG
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
TCGAAACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:219914 original size:26 final size:26
Alignment explanation
Indices: 219878--219930 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
219868 GTTGACTTAG
*
219878 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
219904 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
219930 G
1 G
219931 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:221645 original size:26 final size:26
Alignment explanation
Indices: 221616--221668 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
221606 GTTCACTTAG
*
221616 GCATACGGAGTTCACTCCCAATCTAA
1 GCATACGGAGTACACTCCCAATCTAA
* *
221642 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACACTCCCAATCTAA
221668 G
1 G
221669 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTACACTCCCAATCTAA
Found at i:225094 original size:26 final size:25
Alignment explanation
Indices: 225058--225109 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
225048 GTTGACTTAG
225058 GCATACAGAGTTCATTCCAAGTCTAA
1 GCATACAGAGTTCATTCC-AGTCTAA
* *
225084 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACAGAGTTCATTCCAGTCTAA
225109 G
1 G
225110 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAGTCTAA
Found at i:226004 original size:26 final size:26
Alignment explanation
Indices: 225968--226020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
225958 GTTGACTTCG
*
225968 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
225994 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
226020 G
1 G
226021 ATCTGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:226723 original size:26 final size:25
Alignment explanation
Indices: 226694--226745 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
226684 GTTGACTTGG
226694 GCATACGGAGATCATTCCAAGTCTAA
1 GCATACGG-GATCATTCCAAGTCTAA
* * *
226720 GCATATGGGTTCATTCCCAGTCTAA
1 GCATACGGGATCATTCCAAGTCTAA
226745 G
1 G
226746 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGGATCATTCCAAGTCTAA
Found at i:227625 original size:26 final size:26
Alignment explanation
Indices: 227595--227647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
227585 GTTGACTTAG
* *
227595 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
227621 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
227647 G
1 G
227648 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:228531 original size:26 final size:26
Alignment explanation
Indices: 228495--228547 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
228485 GTTCACTTAG
*
228495 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
228521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
228547 G
1 G
228548 TTCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:229413 original size:26 final size:26
Alignment explanation
Indices: 229384--229436 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
229374 GTTGACTTAG
*
229384 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
*
229410 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
229436 G
1 G
229437 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:230812 original size:902 final size:902
Alignment explanation
Indices: 226147--235178 Score: 10361
Period size: 902 Copynumber: 10.0 Consensus size: 902
226137 TCGTGGGTTG
* * *
226147 ACTTTTTTCAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTACATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * * *
226212 CCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGGGATAACACACCATCCAAAAAAATTTTA
66 CCAACAAAAATACAAGGATCACGTCTAC-AAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * **
226277 AAAAATCCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAATTAGTCGTCTTGCCATG
130 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
226342 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCGTTGGCA
195 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* **
226407 TGCAAAAATATGAAGATGTGCCTAAAATCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
260 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
226472 GTCTCCCTGGCTGGCGTAGTGCCTAC-CCGCCCGCCCACCTGCTCATTTCGTCGGTTGGCTTAGG
325 GTCTCTCTGGCCGGCGTAGTGCC--CGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
226536 CATAC-GAAATTCATTCCCAATCTAAGATCGGACCGGA-CAGAGGTTTGTGGCAGCAAGATCGGC
388 CATACGGAGA-TCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGC
* * *
226599 AGGACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCG
452 AGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
226664 CCCGCACGCTCGTTTCATGGGTTGACTTGGGCATACGGAGATCATTCCAAGTCTAAGCATATGG-
517 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* *** * *
226728 GTTCATTCCCAGTCTAAGATCGGATTGGACTGA-GGTTGCGGTAGCACATGCTGGGCTCAGGCAT
582 GTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
* * * *
226792 GTGCTGGTGCCGCATTTTTATTCATCGGGGCACCATCGTCGGAGCATCGTCAGG-GAACCTGACC
647 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CCGGAGAACCTGACC
* * *
226856 GACGGCATTGGGGTTCCGACGATCAGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGT
711 GACGGCATTGGGGTTCCGACGATC-GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
226921 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCAT
775 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
** * * *
226986 AAAGAGCATTTGAGATTTTACAGGTTTGCTGATAGTAGCCACTAAAGTGTATTAAATGGGGAC
840 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
227049 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** * *
227114 CCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTTATTCCGAAAAAAGTTTA
66 CCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* ** *
227179 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAATTCAAGTCGTCTTGCCATG
130 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
**
227244 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCA
195 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
227309 TGCAAAAATATGAAGATGTACCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCACATCCC
260 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
227374 GTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGTCCACCCGCTCGTTTCGTCGGTCGGCTTAGGC
325 GTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
227439 ATAC-GA-ATTCATTCCCAGTCTAAGATCAGACCGGA-TAGAGGTTTGTGGCAGCAGGATCGGTA
389 ATACGGAGA-TCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGCA
* * * * * *
227501 GGACGTAGAGGGGGACCC-AGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCG
453 GCACGCAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
227565 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTGTAAGCATACGGA
517 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
227630 GTTCATTCCCAGTCTAAGATCGGACCGGACAGAGGGTTGCGGTAGCACATGCTAGGCTCAGGCAT
582 GTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
* *
227695 GTGTTGGTGCCGCATTTTTCTTCGTCGGGG-ACCATCACCGGAGCATCGCCGGAGAACCTGACCG
647 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* * * *
227759 ACGGGATTGGGGTTTCGATGATC-GGGGGG--AGGGGGTGTGCGCACATGATGTGCGATGGGTGC
712 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
227821 TGGTA-TCTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCAAGAACTCACACCCCCTTA
777 TGGTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
227885 AAGAGCAATTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGAC
841 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * * * * *
227947 ACTTTTTTCAAATGGCCATAAAATATTGTACACTTCGGGTTTTTAGCTTAATTTTTTTTTGCGTG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
228012 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCATCCGAAAAAATTTTA
66 CCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT-
** * * *
228077 AAAAAATCTTGAACCGCAAGAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
129 AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
228142 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATGAAAATGGCATTGGC
194 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** *
228207 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
259 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
228272 CGTCTCTCTGGCCGGCGTAGTGCCTGCCCTCCCGCCCACCCGCTCGTTTAGTCGGTTGGCTCAGG
324 CGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
228337 CATACAGA-ATTCATTCCCAGTCTAAGATCTGACCGGA-CAGAAGG-TTGTGGCAGCAGGATCGA
388 CATACGGAGA-TCATTCCCAGTCTAAGATCAGACCGGACCAG-AGGATTGTGGCAGCAGGATCGG
* * * ** * *
228399 CAGGATGGAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
451 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
228464 GCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGG
516 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
228529 AGTTCATTCCCAGTCTAAGTTCGGACCAGACTGAGGGTTACGGTAGCACATACTGGGCTCGGGCA
581 AGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* * *
228594 TGTGCTGGTGCCACATTTTTCTTCGTCAGGGCACCAT---C---G--T---CGGAGAACTTGACC
646 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * * *
228648 GACGGGATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGGTGTGCGCACATGATGTGTGATGGGT
711 GACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
228713 GCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
775 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
228778 AAAGAGCATTTGAGATTTTACCGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
840 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
228841 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
228906 CCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACGCCTTCCGAAAAGAA-TGT
66 CCAACAAAAATACAAGGATCACGTCTAC-AAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTT
* * *
228970 AAAAAAT-CCGAAACCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
129 AAAAAATCCCG-AACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
229034 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
193 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* ** * *
229099 CATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACTGTATCAATCCACGGCTTGCCCATC
258 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
229164 CCGTCTCTCTGGCCGGCGTGGTG--C-CCGCCCGTCCGCCCGCTCGTTTCGCCGGTTGGCTTAGG
323 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
229226 CATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACC-GAGGGTTGTGGTAGCAGGATCGGCA
388 CATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGCA
* * * * * *
229290 GCACGCAGAGGGGGACCCAACCGATCCCC-AGCTAGCGCATCCCACCCCTCTGGCTGGCTTAGTG
453 GCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
229354 CCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGA
517 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** * *
229419 GTTCATTCCCAATCTAAGATCAAACTGGATC-GAGGGTTGCAGTAGCACATGTTGGGCTCGGGCA
582 GTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* * * * *
229483 TGTGCTGGTGCCGCATTATTCTTTGTC-GAG-A-CA----C----CATCACCGGAGAACCTGACT
646 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
** * * * *
229537 GGTGGTATTAGGGTTCCGACGATC-GGGGGGCTGGGGGGTGTGC-C-CAGGATGTGCGATGGGTG
711 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
229599 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTA
776 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
229664 AAGAGCATTTGAGATTTTACAGATTTACTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
841 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
229726 ACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGTGCTTTTAGCTGAATTTTTTTGTGCATC
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-
* ** * *
229791 CCCAA-AAAAATTGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-CAGAAAAATTTT
65 GCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
* * * *
229854 TAAAAATCCAGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
129 AAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
229919 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
194 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
229984 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
259 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
230049 CGTCTCTCTGGCCGGTGTAGTGCCCTGTCGCCCGACCGCCCGCTCGTTTTGTCGGTTGGCTAAGG
324 CGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** ***
230114 CATACGGAGATCATTCCTAGTCTAAGATCAGACCGGACCGGAGG-TTGCAGCAGCAGGATCTATA
388 CATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGCA
* * * *
230178 GCACGTAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
453 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
230243 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
518 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
230308 TTCATTCCCAGTCGAAGATCAGACCAGACAGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATG
583 TTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATG
* * * * *
230373 TGCTGTTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGTATCACCGGAGAACCTGACCGG
648 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGA
* * * * * * *
230438 CGGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGGGCACACATGACGTGCGATAGGTGCC
713 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
230503 AGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAA
778 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * *
230568 AAGCATTTGAGATTTTACAGGTTTACCGCCAGTAGCCGTTAAAGTGTTTGAAATGGGGAC
843 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
230628 ACTTTTTTCAAATTGTCACAAAATCTTCTACACTTCGAGTTTTTAGCAGAAGTTTTTTGTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
230693 CCAACAAAAATACAAGGATCACATCTA-ATAGTCTGGGGCCAAAACTCCTTCCAAAAAAATTTTG
66 CCAACAAAAATACAAGGATCACGTCTACA-AGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* *
230757 AAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
130 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* **
230822 AAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAAATTGGCA
195 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*** *
230887 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
260 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
230952 GTCTCTCTGGCTGGCGTAGTG--C-CCG-CTGCCCA----TTCGTTTCGTCGGTTGGCTTAGGCA
325 GTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* *
231009 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAATGAGGGTCGTAACAGTAGGATCAAACCGA
390 TACGGAGATCATTCCCAGTCTAAGATCAGACC-G---GA----C----CAG-AGGAT--------
* * * * * * * *
231074 GGATTACGACAGCAGGATCGACAGCATGCAGAAGGGGACCCGGCCGATCCACGACATGCGCATCC
434 TG--T--GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCC
* * * *
231139 TGCCCCTCTGGCCGGCTGAGCGCCCGTAAGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
495 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
231204 ATTCCCAGTCTAAG-AT-C-G-G---------A--CT--G----GA-C---C-GAGGGTTGCGGT
560 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGT
* * *
231243 ATCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCAGA
625 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGA
* * **
231308 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTTCGGTGAT--GGGGGGCCGGGGGGTGTGC
690 GCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGC
231371 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
755 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * * *
231436 TTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCCGCTAGTAGCCGTTAA
820 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
231501 AGTGTCTCAAATGGGGAC
885 AGTGTCTGAAATGGGGAC
* * *
231519 ACTTTTTTCAAATTGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
231584 CCAACAAAAATACAAGGATCACGTCTAGCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTT
66 CCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * * *
231649 AAAAATCCC-AGACCGTAAAAAGTTTTGAAAATCGTAAAAAATAGAATACGAGTCGTCTTGCCAT
130 AAAAATCCCGA-ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
231713 GAAACTTCACGTGAGGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAGC
194 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
231778 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCT
259 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
231843 TGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAAG
324 CGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
** * * * ** * *
231908 CATATAGAGTTCATTCCCAGTCTAAGATCAGATC-AAATAGAGGATTGTGACAGTAGGATCGGCA
388 CATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGCA
* * * * * * * *
231972 GCATGCAGAGGTGGACTCGATCGATCCTCGACTTGCGTATCCTGCCTCTCTGGCCGGCTGAGCGC
453 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
232037 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAACTTCATTCCCAGTCTAAGCATACAGAG
518 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
232102 TTCATTCCCAGTCTAAGATCAAACCAGACCA-AGGGTTGCAGCAGCACATGCTAGGCTTGGGCAT
583 TTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
** * * * *
232166 GTGCTGGCACTGAAGTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCG
647 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* * ** ** *
232231 GCGGCATTGGGATTCCGGGGATCGGGGGGGCTTTGGGGGTGTGCGCACATGATGTGCGATGGGTT
712 ACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
232296 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTA
776 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
232361 AAGAGCAGTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGAC
841 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
** * *
232423 ACCATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
232488 CCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
66 CCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
* * * * * *
232553 AAAAATCTCAAACAGCAAAAAGCTTCAACAA-CTGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
130 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGCCAT
232617 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
194 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** ** * ** * **
232682 ATGCAGAAATATGAAGATCCCCGCCTTGTGCATCCCGCCCCT-CTGGCCGGCTGAGCGCCCGCAC
259 ATGCAGAAATATGAAGAT--GTGCC---T--AAACC-CACCTAC-CACC--CT-ATCGATC-CAC
** * ** * * * * * *** ** *
232746 -GCTTGTTTCGT-GGGT-TCACTTAGGCATATGGAGTTCA-TTCCCAGTC-TAAGATCAAACCAG
311 GGCTTG-CGCATCCCGTCTCTC-T-GGC---CGGCG-T-AGTGCCC-GCCGCCCG--CCCACCCG
* * * * * * * ** *
232806 ACTGAGGGTTGCGGTAGCACATGCTGGGC-TCGAGCATGTGCTGGTGCGGCATTTTTCTTCGTCG
365 -CT---CGTTTC-GT----C--GGTTGGCTTAG-GCA--TAC--G-G-AG-ATCATTC--C--CA
* **** ** * *
232870 GTTGGCTTAGGCATACAGAGTTCACTCTTAGTATAAGAT--CAGACCAGATCGAGGGTTGCGGCA
407 G-T--C-TAAG-AT-CAGACCGGAC-CAGAGGAT-TG-TGGCAG--CAG---GA----T-CGGC-
* * * * **
232933 ATAGGATGGACAACACGGAGAGGGGGACCCGGCTGATCCCCGGCTTGCGCATCTAGCCCCTCTGG
452 -----A--G----CACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGG
** * * *
232998 CCGATTGAGTGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCT
506 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * **
233063 AAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACTGAGGGTGTTG-GCCA-CACATGC
571 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACAGA-GG-GTTGCGGTAGCACATGC
* * * * *
233126 TGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGAAGCATCGTCG
634 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
* * * * *
233191 GAGAACCTGACTGGCGGCATTGGTGTTCCGACGATCGGGGGGGTCGGGGGGTGTGCGCATATGAT
699 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
* * *
233256 GTGTGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
764 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
233321 CACACCCCCTTAAAGTGCATTTCAGATCTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
829 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
233386 AATGGGGAC
894 AATGGGGAC
233395 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** * * * **
233460 CCAAAAAAAAAATACAAGGATCACAACTTCCAAGGTTGGGGCCAAAACTCTTTCTGAAAAAATTT
66 CC--AACAAAAATACAAGGATCACGTC-TACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * * * * * *
233525 AAAAAAATCCTGAACCACAAAAAGTTTCAAAAATCGTCAAAAATAGAAAACGAGTCATTTTGCCA
128 TAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
233590 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
193 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
233655 CATGAAGGAATATGAAGATGTGCCTAAACCCACCAACCACCTTATCGATCCACGGCTTGCGCATC
258 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
233720 CCGTCTTTCTGGTCGGCGTAGTGCCCGCCCGCCCGGCCGCTCGCTCATTTCGTCGGTTGGATTAG
323 CCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* *** * * * * ** *
233785 GCATACGGAGTTCATTTTGAGTCTAAGATCGGACTGGACC-GAGGGTTGTGGTAATAGGATCGAC
387 GCATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGC
* ** * *
233849 AGAACGCAGAGGGGGACCCGGTCGATCCCCGCCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
452 AGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** *
233914 CCCGCACGCTCGTTTCGTGCATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGA
517 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
** * * * * *
233979 GTTCATTCCCAGTCTAAGATTGGATCGGACCA-AGGGTTACGGCAGCACATGCTGGGCTCAGGCA
582 GTTCATTCCCAGTCTAAGATCAGACCAGA-CAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
* * * ** *
234043 TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATTGTCGGAGCATCATCGGATAACCTGACC
646 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* * * *
234108 GACGACTTTGGGGTTCCGACGATC-TGGGGGCCGGAGGGGTGTGCGATGGGTGCTCATATGATGT
711 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGC-------G--CACATGATGT
* * * * *
234172 GCGGTGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCATCATCAAACCTCAATAACTCA
766 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
234237 CACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAA
831 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
234302 TGGGGAC
896 TGGGGAC
* *
234309 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATA
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** *
234374 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTTGCTAAAACTCCTTCCAAAAAAATTTTA
66 CCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
** * * * * ** * *
234439 AAAAATCTAGAACCGTAAAAAGTTTCAAAAATTGTTAAAAATAGAAAATTAGTCATCTTGCCATA
130 AAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
234504 AAACTTCACGTGAAGGCTTAAGGGACC-TCTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
195 AAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
234568 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGGATCC
259 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
234633 CGTCTCTTTGGCCGGTGTAGTGCTCGCCAACCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGG
324 CGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
234698 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGTAGCAGGATCGGTA
388 CATACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGCA
* * *
234762 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GCCGGCTAAGCAC
453 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
234826 CCGCACGCTCGTTTCGTGGGTTAACTTAGGGATACGGAGTTCATTCCCAGTCCAAG-AT-C-G-G
518 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
234887 ---A-----A--C---G----GA-C---C-GAGGGTTACGGCT-GTAAATGCTTGGCTCGGGCAT
583 TTCATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGG-TAGCACATGCTGGGCTCGGGCAT
* * ** * * * *
234929 GTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCAAAGCATCACTGAAGAACCTGATCG
647 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG
* *
234994 ACGGCATTGGGGTTCCGACGTTCGGGGGGACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
712 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
235059 TGGTACTTGGCCCTTATATTTGCCCCC-ATCCCTCATCAAACCTCGAGAACTCAGACCCCCTTAA
777 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
235123 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTGAAATG
842 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
235179 CCAACAAAAA
Statistics
Matches: 6994, Mismatches: 892, Indels: 515
0.83 0.11 0.06
Matches are distributed among these distances:
875 206 0.03
876 46 0.01
877 2 0.00
878 2 0.00
879 2 0.00
883 5 0.00
884 202 0.03
885 351 0.05
886 18 0.00
887 18 0.00
888 290 0.04
889 305 0.04
890 42 0.01
891 250 0.04
892 232 0.03
893 355 0.05
894 259 0.04
895 9 0.00
896 3 0.00
897 15 0.00
898 265 0.04
899 277 0.04
900 277 0.04
901 356 0.05
902 860 0.12
903 69 0.01
904 413 0.06
905 244 0.03
906 8 0.00
907 2 0.00
908 1 0.00
909 3 0.00
910 1 0.00
911 71 0.01
912 376 0.05
914 203 0.03
915 14 0.00
916 9 0.00
917 4 0.00
918 3 0.00
919 123 0.02
920 5 0.00
921 7 0.00
922 4 0.00
925 7 0.00
926 2 0.00
927 4 0.00
928 1 0.00
929 6 0.00
930 3 0.00
931 4 0.00
932 9 0.00
934 2 0.00
935 1 0.00
937 1 0.00
938 1 0.00
939 7 0.00
940 1 0.00
941 2 0.00
942 1 0.00
943 2 0.00
944 3 0.00
946 8 0.00
947 5 0.00
948 3 0.00
949 4 0.00
950 1 0.00
951 7 0.00
952 3 0.00
953 6 0.00
956 4 0.00
957 4 0.00
958 6 0.00
959 4 0.00
960 1 0.00
961 4 0.00
962 7 0.00
963 12 0.00
964 3 0.00
966 5 0.00
967 5 0.00
969 2 0.00
972 212 0.03
973 231 0.03
974 187 0.03
975 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (902 bp):
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
AAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGATCATTCCCAGTCTAAGATCAGACCGGACCAGAGGATTGTGGCAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCAGACAGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
Found at i:233077 original size:26 final size:26
Alignment explanation
Indices: 233041--233091 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
233031 TGACTTAGGA
233041 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
233067 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
233092 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:233976 original size:26 final size:26
Alignment explanation
Indices: 233947--233996 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
233937 GACTTAGGCA
233947 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
233973 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
233997 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:235983 original size:180 final size:179
Alignment explanation
Indices: 235681--236082 Score: 707
Period size: 180 Copynumber: 2.2 Consensus size: 179
235671 TCTTGTGTAG
*
235681 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAGTCCTTTTTTTGAAAATTTACTTTTAAGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TCTTTTTTTTGAAAATTTACTTTTAAGAAAA
235746 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAAGGAAAATT
65 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAAGGAAAATT
*
235811 GATAATTTCAACTTTTCCCTAAAATATTTTTTGGAAATTTTGATTTTTAA
130 GATAATCTCAACTTTTCCCTAAAATATTTTTTGGAAATTTTGATTTTTAA
*
235861 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTCTTTTTTTTGAAAATTTACTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TCTTTTTTTTGAAAATTTACTTTTAAGAAAA
* *
235926 ATTGATACTTTCAACTTTTCCCCACAAATATTTTTTGGAAATTTATTTTTGTTTTAAGGAAAATT
65 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAAGGAAAATT
*
235991 GATACTCTCAACTTTTCCCTAAAATATTTTTTGGAAATTTTGATTTTTAA
130 GATAATCTCAACTTTTCCCTAAAATATTTTTTGGAAATTTTGATTTTTAA
*
236041 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATCTTTTTTT
236083 GGAATTTTTG
Statistics
Matches: 213, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
179 9 0.04
180 204 0.96
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (179 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTTGAAAATTTACTTTTAAGAAAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTCTTTTAAGGAAAATTG
ATAATCTCAACTTTTCCCTAAAATATTTTTTGGAAATTTTGATTTTTAA
Done.