Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 20 of 120
Found at i:2250615 original size:26 final size:26
Alignment explanation
Indices: 2250585--2250637 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2250575 GTTGACTTAG
2250585 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2250611 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2250637 G
1 G
2250638 ATTGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2250616 original size:332 final size:318
Alignment explanation
Indices: 2250005--2250928 Score: 1007
Period size: 320 Copynumber: 2.9 Consensus size: 318
2249995 TCGGCATCAT
* * * * * ** *
2250005 GCAG-GAGGGATCGGGCCGATCCCCGGCTTGCGCATTCTACCTCTCCAACCTG-CTGAGTGCCGG
1 GCAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATCCTGCCTCTTCGGCC-GACTGAGTGCCCG
* ** * * *
2250068 AACATTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATG-TCTAAGCCCCAACCGAA
65 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CGATCTAAGCCCCAACCGAA
**** * * *
2250132 CTGAGGGTTGTGGCAGTGGGACCGACAGCACACAGAGGGGGATCGGGCCGATCCCCGGCTTATGC
129 CTGAGGG-ACCCGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTATGC
* * * * *
2250197 ATTATGCCTCTCCGGTCGGCTCAGTGCCCGTACACTTGTTTCGTGGGTTGACTTAGGCATATGAA
193 ATT-TG-CTCTCCGATCGGCTCAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAA
* *
2250262 GTTCATT-CCTGTTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGATCAGGCAGCGAGATC
256 GTTCATTCCCAG-TCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT---T--GG-A-C-----C
*
2250326 GACAATAGCAC
308 GACAACAGCAC
*
2250337 GTAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATCCTGCCTCTTCGGCCGACTGAGTGCCCGC
1 GCAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATCCTGCCTCTTCGGCCGACTGAGTGCCCGC
* * *
2250402 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCGATCTAAGCCCCAACCAAACT
66 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCCAACCGAACT
* * *
2250467 GAGGGACCCGTAGTGGGATCGACAACACGCAGAGGGGGACCGGGCCGATCCTCGGCTTATGCATT
131 GAGGGACCCGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTATGCATT
*
2250532 CTAGCTCTCCGATCGGCTCAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATAC-AGAGT
196 -T-GCTCTCCGATCGGCTCAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGA-AGT
*
2250596 TCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGACAGCAGCAC
258 TCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGACAACAGCAC
* * * * * *
2250657 GCAGAGGGGGACCGGGTTGATCCTCGGCTTGCGTATCCTGTCTCTTCGGCC-AGCTGAGCGCCCG
1 GCAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATCCTGCCTCTTCGGCCGA-CTGAGTGCCCG
* * * *
2250721 CACGCTCATTTCGTGGATTGACTTAGGCATATGGAGTTCATTCTCGATCTAAGCCCCAACCGGAC
65 CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCCAACCGAAC
* * * * * * ***
2250786 TGAGGGACCCACAGCGAGATCGGCAGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTGCACAT
130 TGAGGGACCCGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTATGCA-
* * * * * *
2250851 TTTGGTCACC-AGGCGGCTGAGTGCCCGGACGCTTGTTTCATGGGTTGACTTAGGCATACGTAGT
194 TTTGCTCTCCGA-TCGGCTCAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGT
*
2250915 GCATTCCCAGTCTA
258 TCATTCCCAGTCTA
2250929 GACCAACCAA
Statistics
Matches: 509, Mismatches: 73, Indels: 33
0.83 0.12 0.05
Matches are distributed among these distances:
318 1 0.00
319 65 0.13
320 176 0.35
321 2 0.00
325 1 0.00
326 1 0.00
327 2 0.00
329 1 0.00
331 1 0.00
332 146 0.29
333 113 0.22
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (318 bp):
GCAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATCCTGCCTCTTCGGCCGACTGAGTGCCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGATCTAAGCCCCAACCGAACT
GAGGGACCCGCAGTGGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTCGGCTTATGCATT
TGCTCTCCGATCGGCTCAGTGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGACAACAGCAC
Found at i:2250744 original size:162 final size:153
Alignment explanation
Indices: 2250332--2250938 Score: 429
Period size: 158 Copynumber: 3.8 Consensus size: 153
2250322 GATCGACAAT
* * * *
2250332 AGCACGTAGAGAGGGATCGGGTCGATCCTCGGCTTGCGCATCCTGCCTCTTCGGCCGACTGAGTG
1 AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCTG-CTCTTCGGCCG-CTGAGCG
2250397 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCGATCTAAGCCCCAACC
64 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCGATCTAAG--CCAACC
* *
2250462 AAACTGAGGGACCCGTAGTGGGATCGACA
126 AAACTCA-GGACCCGTAGTGGGACCGACA
* ** * * * * *
2250491 A-CACGCAGAGGGGGACCGGGCCGATCCTCGGCTTATGCATTCTAGCTCTCCGATCGGCTCAGCG
1 AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCT-GCTCTTCG-GCCGCTGAGCG
* *
2250555 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCC-AGTCTAAG-CATA-C
64 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCGA-TCTAAGCCA-ACC
** ** *
2250617 AGAGTTCA-TTCCCAGTCTAAGATTGGACCGACA
126 A-AACTCAGGACCC-G--T-AG-TGGGACCGACA
* *
2250650 GCAGCACGCAGAGGGGGACCGGGTTGATCCTCGGCTTGCGTATCCTGTCTCTTCGGCCAGCTGAG
1 --AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCTG-CTCTTCGGCC-GCTGAG
* * * *
2250715 CGCCCGCACGCTCATTTCGTGGATTGACTTAGGCATATGGAGTTCATTCTCGATCTAAGCCCCAA
62 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCGATCTAAG--CCAA
** * ** * * * *
2250780 CCGGACTGAGGGACCCACAGCGAGATCGGC-
124 CCAAACTCA-GGACCCGTAGTGGGACCGACA
* * * * * ** * ** * *
2250810 AGCACGTAGAGGGGGATCGGGCCGATCCTCAGCTTGCACATTTTGGTCACCAGGCGGCTGAGTGC
1 AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCTGCTCTTC-GGCCGCTGAGCGC
* * * *
2250875 CCGGACGCTTGTTTCATGGGTTGACTTAGGCATACGTAGTGCATTCCC-AGTCT-AGACCAACCA
65 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCGA-TCTAAG-CCAACCA
2250938 A
127 A
2250939 GGGCCAGAGG
Statistics
Matches: 345, Mismatches: 76, Indels: 58
0.72 0.16 0.12
Matches are distributed among these distances:
154 3 0.01
155 11 0.03
156 8 0.02
157 54 0.16
158 138 0.40
159 14 0.04
161 8 0.02
162 99 0.29
163 1 0.00
164 3 0.01
165 3 0.01
166 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.22
Consensus pattern (153 bp):
AGCACGCAGAGGGGGACCGGGTCGATCCTCGGCTTGCGCATCCTGCTCTTCGGCCGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCGATCTAAGCCAACCAAACT
CAGGACCCGTAGTGGGACCGACA
Found at i:2251196 original size:45 final size:45
Alignment explanation
Indices: 2251077--2251196 Score: 111
Period size: 44 Copynumber: 2.7 Consensus size: 45
2251067 CGGGGCTCGA
* *
2251077 CATGTGCCGATGGTGGTCGAGGCAACCG-CCAGCACCACGGCCCAG
1 CATGTGTC-ATGGTGGTCGAGTCAACCGCCCAGCACCACGGCCCAG
* * * *
2251122 CATGTGTCATGGTGTTCGA-TGCAACCGCCCA-CACCAGGGGCCAT
1 CATGTGTCATGGTGGTCGAGT-CAACCGCCCAGCACCACGGCCCAG
* * *
2251166 CTTGTGCTTATGGTGGTCGAGTCAATCGCCC
1 CATGTG-TCATGGTGGTCGAGTCAACCGCCC
2251197 GCAGCAAGGG
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
44 31 0.51
45 29 0.48
46 1 0.02
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
CATGTGTCATGGTGGTCGAGTCAACCGCCCAGCACCACGGCCCAG
Found at i:2252162 original size:26 final size:26
Alignment explanation
Indices: 2252132--2252184 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2252122 GTTGACTTAG
*
2252132 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
2252158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2252184 G
1 G
2252185 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2252501 original size:26 final size:26
Alignment explanation
Indices: 2252472--2252525 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
2252462 TGGGTTGACT
*
2252472 TAGGCATACGGAGTTCAGTCCCAGTC
1 TAGGCATACGAAGTTCAGTCCCAGTC
*
2252498 TAGGCATACGAAGTTCATTCCCAGTC
1 TAGGCATACGAAGTTCAGTCCCAGTC
2252524 TA
1 TA
2252526 AGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGAAGTTCAGTCCCAGTC
Found at i:2253126 original size:45 final size:45
Alignment explanation
Indices: 2252981--2253138 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
2252971 GGGCTCGGCA
* * * * * *
2252981 TGTGCCGATGCTGGTCGAGGCAACCGTCCGCACCATGTCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* * * *
2253026 TGTGCCGATGGTGTTCGATGCAACCACCCGCACCAAGGG-CCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAGCT
* * * *
2253071 TGTACGGATGGTGGTCGAGGCGACCGCCCTCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* * *
2253116 TGGGCCGATGGAGGTCAAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2253139 GTGCCCGTAC
Statistics
Matches: 87, Mismatches: 24, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
44 4 0.05
45 81 0.93
46 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
Found at i:2254108 original size:26 final size:26
Alignment explanation
Indices: 2254079--2254131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2254069 GTTGACTTAG
*
2254079 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
2254105 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2254131 G
1 G
2254132 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2254875 original size:26 final size:26
Alignment explanation
Indices: 2254840--2254917 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
2254830 TTTGACTTAG
**
2254840 GCATA-GGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
2254865 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
2254891 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
2254917 G
1 G
2254918 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 5 0.10
26 45 0.90
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:2255063 original size:222 final size:223
Alignment explanation
Indices: 2254684--2255089 Score: 552
Period size: 223 Copynumber: 1.8 Consensus size: 223
2254674 CGTAGTACGC
* *
2254684 TTCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGACCCACAGCAGGATCGGTAGCA
1 TTCCAGTCTAAGATCAGACCAGACTGAGGGCTGCGATAGCAAGACCCACAGCAGGATCGGTAGCA
* * * * **
2254749 CACAGAGGGGACCAGATCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGTGCCCGC
66 CACAGAGGGGACCAGATCGATCCCCGACTTGTGCATCCTACCTCTCCGGCCAGCTGAGCACCCGC
*
2254814 ATGCTCGTTTCGTGGGTTTGACTTAGGCATA-GGAGTTCATCCCCA-GTCTAAGCATACGGAGTT
131 ATGCTCGTTTCGTGGGTTAGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGCATACGGAGTT
2254877 CATTTCCAGTCTAAGCATACGGAGTTCAT
195 CATTTCCAGTCTAAGCATACGGAGTTCAT
* ** *
2254906 TTCCAGTCTAAGATCAGACCGGA-TCGAGGGCTGCGATAGCCGGA-CCAGCAGCAGGATTGGTAG
1 TTCCAGTCTAAGATCAGACCAGACT-GAGGGCTGCGATAGCAAGACCCA-CAGCAGGATCGGTAG
* * * * * *
2254969 CACACAGGGGGGGATCGGGTCGATCCCTGACTTGTGCATTCTACCTCTCCGGCCAGCTGAGCACC
64 CACACA-GAGGGGACCAGATCGATCCCCGACTTGTGCATCCTACCTCTCCGGCCAGCTGAGCACC
* *
2255034 TGCATGCTCGTTTCGTGGGTTAG-CTTAGGCATACGGAGTTCATTCCATGTCTAAGC
128 CGCATGCTCGTTTCGTGGGTTAGACTTAGGCATACGGAGTTCATCCCATGTCTAAGC
2255090 CCCAACCAGA
Statistics
Matches: 158, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
221 4 0.03
222 70 0.44
223 84 0.53
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (223 bp):
TTCCAGTCTAAGATCAGACCAGACTGAGGGCTGCGATAGCAAGACCCACAGCAGGATCGGTAGCA
CACAGAGGGGACCAGATCGATCCCCGACTTGTGCATCCTACCTCTCCGGCCAGCTGAGCACCCGC
ATGCTCGTTTCGTGGGTTAGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCATACGGAGTTC
ATTTCCAGTCTAAGCATACGGAGTTCAT
Found at i:2255252 original size:26 final size:26
Alignment explanation
Indices: 2255221--2255273 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2255211 GTTGACTTAG
2255221 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2255247 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2255273 G
1 G
2255274 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2255421 original size:45 final size:45
Alignment explanation
Indices: 2255314--2255441 Score: 123
Period size: 45 Copynumber: 2.8 Consensus size: 45
2255304 CGTAGAGGGG
* * * * *
2255314 CACCACGGCCCAGCATGTGCCGATGGTGTTCG-GTGCAACCGCCCG
1 CACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAG-GCAACCGCCCA
* *
2255359 CACCTGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAACCGCCCA
1 CACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCA
** * * **
2255404 CACCAGGTTCTAGCTTGTACCGATGGCAGTCGAGGCAA
1 CACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAA
2255442 GTGCCTGTAC
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 66 0.99
46 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.18
Consensus pattern (45 bp):
CACCAGGGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCGCCCA
Found at i:2258317 original size:138 final size:138
Alignment explanation
Indices: 2258175--2258456 Score: 348
Period size: 138 Copynumber: 2.0 Consensus size: 138
2258165 CGGTAGAGGG
* * * * * * * * *
2258175 GATCGGGTCAATCCCTGGCTTGTGCATCCTGCCTCTCTGCCCGGTTGAGCGCCCGTACGCTCGTT
1 GATCGGGCCAATCCCTAGCTTGCGCATCATGCCTCTCCGCCCGGCTCAGCGCCCGCACGCTCATT
** *
2258240 TCATGGGTTAACTTAGGCATACGGAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCCTAGTC
66 TCATGGGTTAACTTAGGCATACAAAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCCCAGTC
2258305 TAAGATCA
131 TAAGATCA
* * * * * * *
2258313 GATCGGGCCGATCCGTAGCTTGCGCATTATGCCTCTCCGGCCTGCTCAGTGCCTGCACGCTCATT
1 GATCGGGCCAATCCCTAGCTTGCGCATCATGCCTCTCCGCCCGGCTCAGCGCCCGCACGCTCATT
** * *
2258378 TTGTGGGTTGACTTAGGCATACAAAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTC
66 TCATGGGTTAACTTAGGCATACAAAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCCCAGTC
*
2258443 TAAGATCG
131 TAAGATCA
2258451 GATCGG
1 GATCGG
2258457 CAGCAGCATG
Statistics
Matches: 120, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
138 120 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (138 bp):
GATCGGGCCAATCCCTAGCTTGCGCATCATGCCTCTCCGCCCGGCTCAGCGCCCGCACGCTCATT
TCATGGGTTAACTTAGGCATACAAAGTTCATCACCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCA
Found at i:2259161 original size:23 final size:23
Alignment explanation
Indices: 2259134--2259189 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
2259124 ATGGTTGATG
*
2259134 CATGTGCCATCACCATGCGCCAT
1 CATGTGCCATCACCATGCACCAT
*
2259157 CATGTGCCATCACCATGCATCAT
1 CATGTGCCATCACCATGCACCAT
2259180 CATGTGCCAT
1 CATGTGCCAT
2259190 TGATGGTCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.23, C:0.36, G:0.16, T:0.25
Consensus pattern (23 bp):
CATGTGCCATCACCATGCACCAT
Found at i:2259746 original size:45 final size:45
Alignment explanation
Indices: 2259637--2259790 Score: 132
Period size: 45 Copynumber: 3.4 Consensus size: 45
2259627 TCGACATGTA
* * * * ** *
2259637 CCGATGGTGGTCAAGGCAACCA-CCTATACCACGACCCAGCATGTG
1 CCGATGGTGGTCGAGGCAACCACCCT-CACAAGGGGCCAGCTTGTG
* * * * * * *
2259682 CCGATGGTGTTCAATGCAACC-GCTTGCACAAGGGTCCATCTTGTG
1 CCGATGGTGGTCGAGGCAACCACCCT-CACAAGGGGCCAGCTTGTG
*
2259727 CCGATGGTGGTCGAGGCAACCACCCTCACCAGGGGCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACCACCCTCACAAGGGGCCAGCTTGTG
*
2259772 CCGATGATGGTCGAGGCAA
1 CCGATGGTGGTCGAGGCAA
2259791 GTGCCCGTAC
Statistics
Matches: 87, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
45 85 0.98
46 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACCACCCTCACAAGGGGCCAGCTTGTG
Found at i:2259817 original size:45 final size:45
Alignment explanation
Indices: 2259723--2259878 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
2259713 GGGTCCATCT
* *** *
2259723 TGTGCCGATGGTGGTCGAGGCAACCACCCTCACCAGGGGCCAGCT
1 TGTGCCGATGATGGTCGAGGCAAGTGCCCTCACCAGGGGCCAGCC
*
2259768 TGTGCCGATGATGGTCGAGGCAAGTGCCCGT-ACCAATGGG-CAGCC
1 TGTGCCGATGATGGTCGAGGCAAGTGCCC-TCACC-AGGGGCCAGCC
* * * * * * *
2259813 TGTGCCGATGATGGTCGATGCATGTGCCATCACCATGCGCCATCA
1 TGTGCCGATGATGGTCGAGGCAAGTGCCCTCACCAGGGGCCAGCC
2259858 TGTGCC-ATTGATGGTCGAGGC
1 TGTGCCGA-TGATGGTCGAGGC
2259879 CTTGGTCGAA
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
44 6 0.06
45 82 0.88
46 5 0.05
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.21
Consensus pattern (45 bp):
TGTGCCGATGATGGTCGAGGCAAGTGCCCTCACCAGGGGCCAGCC
Found at i:2260778 original size:25 final size:26
Alignment explanation
Indices: 2260727--2260778 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2260717 GTTAACTTAG
2260727 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2260753 GCATACGGAGTTCGT-TCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2260778 G
1 G
2260779 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2261118 original size:26 final size:26
Alignment explanation
Indices: 2261082--2261133 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
2261072 TTGATTTAGA
2261082 CATACAGAGTTCATCCCCAATCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
* * * *
2261108 CATACGGAGTTCGTTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
2261134 ATCAGGACCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAG
Found at i:2261196 original size:356 final size:353
Alignment explanation
Indices: 2260702--2262195 Score: 1563
Period size: 356 Copynumber: 4.2 Consensus size: 353
2260692 GAGCTCTCGG
* * * *
2260702 ACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCG
1 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* **
2260767 TT-CCAGTCTAAGATC-GGATCGGATCGAGGGTTATGATAGCAGGACCAGTCGTAGGATCGGCAG
66 TTCCCAGTCTAAGATCAGGACCGGATCGAGGGTTATGATAGCAGGACCAGTCACA-GATCGGCAG
* * * *
2260830 CATACAGGGGGGAATCGGGCTGATCCCTGGCTTACGCATTCTGCCTCTCCAGCCGGATGAGCCCC
130 CATACAGGGGGG-ACCGGGCCGAT-CCTGACTTACGCATTCTGCCTCTCCAGCCAGATGAGCCCC
* *
2260895 CGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCTGTGTCTAAGCCCCAGTCAG
193 CGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCTATGTCTAAGCCCCAATCAG
* * * *
2260960 ACCGAGGGTTGTGGTAGTGGGACTGACAGCACACAGAGGGGGATCGATCGATCCTCGGCTTGCGT
258 ACCGAGGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGGGGATCGATCGATCCTCGGCTTACGC
** *
2261025 ATTATGTGTCTCCAGCCTGCTCAATGCCCGC
323 ATTATGCCTCTCCAGCCTGCTCAACGCCCGC
* * * * * * * *
2261056 ATGCTCATTTTGTGTGTTGATTTAGACATACAGAGTTCATCCCCAATCTAAGCATACGGAGTTCG
1 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
2261121 TTCCCAGTCTAAGATCAGGACCGGATCGAGGGTTATGATAGTAGGACCAGTCATAGGATCGGCAG
66 TTCCCAGTCTAAGATCAGGACCGGATCGAGGGTTATGATAGCAGGACCAGTCACA-GATCGGCAG
* * * *
2261186 CATACAGGGGGGAATCGGGCTGATCCCT-AGCTTACGCATTCTGCCTCTCCAGCCAGAAGAGGCC
130 CATACAGGGGGG-ACCGGGCCGAT-CCTGA-CTTACGCATTCTGCCTCTCCAGCCAGATGAGCCC
* *
2261250 CCGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCTGTGTCTAAGCCCCAGTCA
192 CCGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCTATGTCTAAGCCCCAATCA
* * *
2261315 GACCGAGGGTTGTGGTAGCGGGACTGGCAGCACACAGTGGGGGATCGATTGATCCCCGGCTTACG
257 GACCGAGGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGGGGATCGATCGATCCTCGGCTTACG
** * *
2261380 CATTATGTGTCTCCAGCCTACTCAACGCTCGC
322 CATTATGCCTCTCCAGCCTGCTCAACGCCCGC
* *
2261412 ACGCTCATTTTGTGTGTTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
1 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
**** * * *
2261477 TTCCCAGTCTAAGCAT-ACGGAGTTCATTCCCA--GTCTAAGAT--C-GGACC-G--ACAG--CA
66 TTCCCAGTCTAAG-ATCA-GGACCGGA-T-CGAGGGT-TATGATAGCAGGACCAGTCACAGATCG
* * * ** * * *
2261531 GCA-CGTAGA-GAGGGACCGAACCGATCCTCGACTTACG-AATCTTGCCTCTCC-GACAGGCTGA
126 GCAGCATACAGGGGGGACCGGGCCGATCCT-GACTTACGCATTC-TGCCTCTCCAGCCA-GATGA
** * * *
2261592 GTGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCA
188 GCCCCCGCACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCTATGTCTAAGCCCCA
* * * * * ** * * * * *
2261657 ATCAGACCAAAGGCTGTGGCT-GTGGGACCGGCAGCACGTAGAGGGGGATCGGTTTGTTTCTCAG
253 ATCAGACCGAGGGTTGTGG-TAGCGGGACTGGCAGCACACAGAGGGGGATC-GATCGATCCTCGG
* * **
2261721 CTTACGCATTATGCCTCACCGGCCTGCTCAGTGCCCGC
316 CTTACGCATTATGCCTCTCCAGCCTGCTCAACGCCCGC
* * * *
2261759 ACACTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATATGGAGTTCA
1 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * * ** * * *
2261824 TTCCAATTCTAAGATC-GGACCAGACCGAAGGTTGCGATAGCAAGACCAGTAACAGATCGGCTGC
66 TTCCCAGTCTAAGATCAGGACCGGATCGAGGGTTATGATAGCAGGACCAGTCACAGATCGGCAGC
* * * * * * **
2261888 ACACAGGGGCGACCGGGCCAATCCTGAACTTACACATTCTGCCTCTCCAGGCAGTTGAGCCCCTA
131 ATACAGGGGGGACCGGGCCGATCCTG-ACTTACGCATTCTGCCTCTCCAGCCAGATGAGCCCCCG
* * * *
2261953 CACGCTCGTTTCATGGGTTGGATTAGGCATACGAAGTTCATTCTATGTCTAAGCCCCAACCAGAC
195 CACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCTATGTCTAAGCCCCAATCAGAC
* * * * * * * *
2262018 TGAGGGTTGTGGTAGCGGAACTGGCAGCACGCAGAGAGGGACCGAGCCGATCCTTGGCTTGCGCA
260 CGAGGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGGGGATCGA-TCGATCCTCGGCTTACGCA
* *
2262083 TTATGCCTCTAC-GACCTGCTCAACGCCTGC
324 TTATGCCTCTCCAG-CCTGCTCAACGCCCGC
* * * * *
2262113 ACGCTCATTTTATGGGTTAACGTAGGCATACAGAGTTCATTCCCAGTCTAAGAATACGGAGTTCA
1 ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
2262178 TTCCCAGTCTAAGATCAG
66 TTCCCAGTCTAAGATCAG
2262196 ACCAGTAGCA
Statistics
Matches: 955, Mismatches: 151, Indels: 67
0.81 0.13 0.06
Matches are distributed among these distances:
343 2 0.00
344 4 0.00
345 15 0.02
346 126 0.13
347 118 0.12
348 5 0.01
349 4 0.00
350 4 0.00
351 1 0.00
352 5 0.01
353 7 0.01
354 294 0.31
355 25 0.03
356 329 0.34
357 8 0.01
358 6 0.01
359 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.24
Consensus pattern (353 bp):
ACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGGACCGGATCGAGGGTTATGATAGCAGGACCAGTCACAGATCGGCAGC
ATACAGGGGGGACCGGGCCGATCCTGACTTACGCATTCTGCCTCTCCAGCCAGATGAGCCCCCGC
ACGCTCGTTTCATGGGTTGGCTTAGGAATACGGAGTTCATTCTATGTCTAAGCCCCAATCAGACC
GAGGGTTGTGGTAGCGGGACTGGCAGCACACAGAGGGGGATCGATCGATCCTCGGCTTACGCATT
ATGCCTCTCCAGCCTGCTCAACGCCCGC
Found at i:2261473 original size:26 final size:26
Alignment explanation
Indices: 2261437--2261515 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
2261427 GTTGATTTAG
2261437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2261463 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2261489 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2261515 G
1 G
2261516 ATCGGACCGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2261820 original size:26 final size:26
Alignment explanation
Indices: 2261784--2261836 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2261774 GTTGACTTAG
*
2261784 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCAACTCTAA
* *
2261810 GCATATGGAGTTCATTCCAATTCTAA
1 GCATACGGAGTTCATTCCAACTCTAA
2261836 G
1 G
2261837 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAACTCTAA
Found at i:2262176 original size:26 final size:26
Alignment explanation
Indices: 2262140--2262191 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2262130 TAACGTAGGC
2262140 ATACAGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
*
2262166 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACAGAGTTCATTCCCAGTCTAAGA
2262192 TCAGACCAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGA
Found at i:2262815 original size:45 final size:45
Alignment explanation
Indices: 2262629--2262965 Score: 189
Period size: 45 Copynumber: 7.5 Consensus size: 45
2262619 TCGGGGCTCG
* * * * *
2262629 GCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCA
1 GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACCAGGGCCCA
* * * * * * *
2262674 GCATATGCCGATGCTGTTCAATGCAACCACCTGCACCAAGGG-CCA
1 GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACC-AGGGCCCA
* * * * ** * * * * *
2262719 TCTTGTGCTGATGGTGGTCGAGCCAATCACCCGTACCA-AGCATCG
1 GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACCAGGGC-CCA
* * *
2262764 GTATGTGCCGATGGTGATCGAGGTAACCGCCCGCATC-GAGGCCCA
1 GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACCAG-GGCCCA
* * * * * *
2262809 GCATGTGTCGATGGTGTTCGATGTAACTACCTGCACCAGGGGCCA
1 GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACCAGGGCCCA
* * * ** * * * **
2262854 TCTTGTGCCGATGGTGGTTAAGGCAATCACCCGCACCAAGTG-CTG
1 GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACC-AGGGCCCA
* *
2262899 GCATGTACCGATGGTGATCGAGGTAACCGCCC-CACCAGGGCCCA
1 GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACCAGGGCCCA
* *
2262943 GCTTGTGCCGATGGCGATCGAGG
1 GCATGTGCCGATGGTGATCGAGG
2262966 CAAGTGCCCG
Statistics
Matches: 208, Mismatches: 76, Indels: 17
0.69 0.25 0.06
Matches are distributed among these distances:
43 4 0.02
44 26 0.12
45 169 0.81
46 9 0.04
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (45 bp):
GCATGTGCCGATGGTGATCGAGGTAACCACCCGCACCAGGGCCCA
Found at i:2262881 original size:135 final size:133
Alignment explanation
Indices: 2262626--2262956 Score: 423
Period size: 135 Copynumber: 2.5 Consensus size: 133
2262616 CGATCGGGGC
* * * * *
2262626 TCGGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATATGCCGATGCTGT
1 TCGGCATGTGCCGATGGTGATCGAGGTAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGT
* * *
2262691 TCAATGCAACCACCTGCACCAAGGGCCATCTTGTGCTGATGGTGGTCGAGCCAATCACCCGTACC
66 TCAATGCAACCACCTGCACCAAGGGCCATCTTGTGCCGATGGTGGTCAAGCCAATCACCCGCACC
2262756 AAG
131 AAG
* * *
2262759 CATCGGTATGTGCCGATGGTGATCGAGGTAACCGCCCGCATCGA-GGCCCAGCATGTGTCGATGG
1 --TCGGCATGTGCCGATGGTGATCGAGGTAACCGCCCGCA-CCACGGCCCAGCATGTGCCGATGG
* * * * * *
2262823 TGTTCGATGTAACTACCTGCACCAGGGGCCATCTTGTGCCGATGGTGGTTAAGGCAATCACCCGC
63 TGTTCAATGCAACCACCTGCACCAAGGGCCATCTTGTGCCGATGGTGGTCAAGCCAATCACCCGC
2262888 ACCAAG
128 ACCAAG
* * *
2262894 TGCTGGCATGTACCGATGGTGATCGAGGTAACCGCCC-CACCAGGGCCCAGCTTGTGCCGATGG
1 T-C-GGCATGTGCCGATGGTGATCGAGGTAACCGCCCGCACCACGGCCCAGCATGTGCCGATGG
2262957 CGATCGAGGC
Statistics
Matches: 170, Mismatches: 22, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
133 3 0.02
134 21 0.12
135 144 0.85
136 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (133 bp):
TCGGCATGTGCCGATGGTGATCGAGGTAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGT
TCAATGCAACCACCTGCACCAAGGGCCATCTTGTGCCGATGGTGGTCAAGCCAATCACCCGCACC
AAG
Found at i:2263029 original size:13 final size:13
Alignment explanation
Indices: 2263011--2263035 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2263001 ATGGTTGATG
2263011 CATGTGCCATCAC
1 CATGTGCCATCAC
2263024 CATGTGCCATCA
1 CATGTGCCATCA
2263036 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2264087 original size:196 final size:196
Alignment explanation
Indices: 2263753--2264131 Score: 473
Period size: 196 Copynumber: 1.9 Consensus size: 196
2263743 CGTAGTGCGC
* *
2263753 TCCCAGTCTAAGATCAGGCCGGATCGAGGGTTGCAGTAGCAGGACTCGCAGCGGGATCGATAGCA
1 TCCCAGTCTAAGATCAGGCCGGATCGAGGGTTACAGTAGCAGGACTCGCAGCAGGATCGATAGCA
* **
2263818 CGCAGAGGGGATCGGGTCAATCCCTGACTTGCGCATCCTGCCTCTCTAGCTGGCTGAGTGCCCGC
66 CGCAGAGGGGATCGAGTCAATCCCTGACTTGCGCATCCTGCCTCTCTAGCTGGCTGAGCCCCCGC
* * *
2263883 ATGCTCATTTTATGGGGTGACTTAGGCATACGAAGTTCATCTCCA-GTCTAAGCAGACAAAGTTC
131 ACGCTCATTTCATGGGGTGACTTAAGCATACGAAGTTCAT-TCCATGTCTAAGCAGACAAAGTTC
2263947 AT
195 AT
* *
2263949 TCCCAGTCTAAGATC-GGACCGGA-CTGAGGGTTACGGTAGTAGGAC-CAGCAGCAGGATCGATA
1 TCCCAGTCTAAGATCAGG-CCGGATC-GAGGGTTACAGTAGCAGGACTC-GCAGCAGGATCGATA
* * * * * * *
2264011 GCACGTAGGGGGGA-CTGAGTCGATCCCTGGCTTGGGCATTCTGCCTCT-TCGGCTGGCTGAGCC
63 GCACGCAGAGGGGATC-GAGTCAATCCCTGACTTGCGCATCCTGCCTCTCT-AGCTGGCTGAGCC
* * * *
2264074 CCCGCACGCTCATTTCGTGGGTTGGCTTAAGCATACGGAGTTCATTCCATGTCTAAGC
126 CCCGCACGCTCATTTCATGGGGTGACTTAAGCATACGAAGTTCATTCCATGTCTAAGC
2264132 CCCAACCGGA
Statistics
Matches: 156, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
195 10 0.06
196 146 0.94
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (196 bp):
TCCCAGTCTAAGATCAGGCCGGATCGAGGGTTACAGTAGCAGGACTCGCAGCAGGATCGATAGCA
CGCAGAGGGGATCGAGTCAATCCCTGACTTGCGCATCCTGCCTCTCTAGCTGGCTGAGCCCCCGC
ACGCTCATTTCATGGGGTGACTTAAGCATACGAAGTTCATTCCATGTCTAAGCAGACAAAGTTCA
T
Found at i:2264292 original size:26 final size:26
Alignment explanation
Indices: 2264263--2264315 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2264253 GTTCACTTAG
* ** *
2264263 GCATATGGAGTTTGTTCCTAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
2264289 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
2264315 G
1 G
2264316 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:2264972 original size:45 final size:44
Alignment explanation
Indices: 2264850--2264972 Score: 120
Period size: 45 Copynumber: 2.7 Consensus size: 44
2264840 GCCATCTTAC
* **
2264850 ACCGATGGTGGTCGAGGCAATAGCCTGTACCAAGGCCTGGCATGT
1 ACCGATGGTGGTCGAGGCAAT-GCCCGTACCAAGGCCCAGCATGT
* * * * * ** *
2264895 GCTGATGGTGATCGAGGCAACCGCTCACACCAAGGCCCAGCTTGT
1 ACCGATGGTGGTCGAGGCAA-TGCCCGTACCAAGGCCCAGCATGT
2264940 ACCGATGGTGGTCGAGGCAAGTGCCCGTACCAA
1 ACCGATGGTGGTCGAGGCAA-TGCCCGTACCAA
2264973 AGGGCAGGCT
Statistics
Matches: 58, Mismatches: 19, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.23, C:0.28, G:0.32, T:0.18
Consensus pattern (44 bp):
ACCGATGGTGGTCGAGGCAATGCCCGTACCAAGGCCCAGCATGT
Found at i:2267827 original size:26 final size:26
Alignment explanation
Indices: 2267791--2267843 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2267781 GTTGACTTAG
2267791 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
*
2267817 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
2267843 G
1 G
2267844 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:2268781 original size:91 final size:90
Alignment explanation
Indices: 2268619--2268786 Score: 207
Period size: 91 Copynumber: 1.9 Consensus size: 90
2268609 TCGACATGTG
* * * *
2268619 CCGATGGTGGTCGAGGCAACCGCTCACACCACGGCCCAGTATGTGCTGATGGTGTTCGATGCAAT
1 CCGATGGTGGTCGAGGCAACCGCTCACACCACGGCCCAGTATGTGCCGATGGCGGTCGAGGCAAT
2268684 CACCCGTACCAAGGGCCATCTTGTT
66 CACCCGTACCAAGGGCCATCTTGTT
* * *
2268709 CCGATTGTGGTCGAGGCAACCGC-CATTCACTAGGGCCCAGCT-TGTGCCGATGGCGGTCGAGGC
1 CCGATGGTGGTCGAGGCAACCGCTCA--CACCACGGCCCAG-TATGTGCCGATGGCGGTCGAGGC
*
2268772 AAGT-GCCCGTACCAA
63 AA-TCACCCGTACCAA
2268787 AGGGTAGCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
89 2 0.03
90 22 0.33
91 40 0.61
92 2 0.03
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAACCGCTCACACCACGGCCCAGTATGTGCCGATGGCGGTCGAGGCAAT
CACCCGTACCAAGGGCCATCTTGTT
Found at i:2268804 original size:91 final size:90
Alignment explanation
Indices: 2268615--2268813 Score: 201
Period size: 91 Copynumber: 2.2 Consensus size: 90
2268605 AGGCTCGACA
* * * * *
2268615 TGTGCCGATGGTGGTCGAGGCAACCGCTCACACCACGGCCCAGTATGTGCTGATGGTGTTCGATG
1 TGTGCCGATTGTGGTCGAGGCAACCGCTCACACCACGGCCCAGTATGTGCCGATGGCGGTCGAGG
* *
2268680 CAATCACCCGTACCAAGGGCCATCT
66 CAATCACCCGTACCAAGGGCCAGCC
* * *
2268705 TGTTCCGATTGTGGTCGAGGCAACCGC-CATTCACTAGGGCCCAGCT-TGTGCCGATGGCGGTCG
1 TGTGCCGATTGTGGTCGAGGCAACCGCTCA--CACCACGGCCCAG-TATGTGCCGATGGCGGTCG
* *
2268768 AGGCAAGT-GCCCGTACCAAAGGG-TAGCC
63 AGGCAA-TCACCCGTACC-AAGGGCCAGCC
2268796 TGTGCCGA-TGATGGTCGA
1 TGTGCCGATTG-TGGTCGA
2268814 TGCATGTGCC
Statistics
Matches: 90, Mismatches: 13, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
89 2 0.02
90 27 0.30
91 54 0.60
92 7 0.08
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (90 bp):
TGTGCCGATTGTGGTCGAGGCAACCGCTCACACCACGGCCCAGTATGTGCCGATGGCGGTCGAGG
CAATCACCCGTACCAAGGGCCAGCC
Found at i:2270666 original size:13 final size:13
Alignment explanation
Indices: 2270648--2270672 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2270638 ATGGTCGATG
2270648 CATGTGCCATCAC
1 CATGTGCCATCAC
2270661 CATGTGCCATCA
1 CATGTGCCATCA
2270673 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2273436 original size:45 final size:45
Alignment explanation
Indices: 2273387--2273483 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 45
2273377 CATCTCGTGC
* * *
2273387 CGATGGCAATCGAGGCAATCACCCGTACCAAGGG-CCGGCATT-TGT
1 CGATGGCAATCGAGGCAACCACCCGCACC-AGGGCCCAGC-TTGTGT
** *
2273432 CGATGGTGATCGAGGCAACCTCCCGCACCAGGGCCCAGCTTGTGT
1 CGATGGCAATCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTGT
2273477 CGATGGC
1 CGATGGC
2273484 GGTTGAGGCA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
44 6 0.14
45 37 0.86
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (45 bp):
CGATGGCAATCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTGT
Found at i:2273944 original size:45 final size:45
Alignment explanation
Indices: 2273893--2274020 Score: 132
Period size: 45 Copynumber: 2.8 Consensus size: 45
2273883 CACACGCTCG
*
2273893 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCATACCACGG-CCTA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGTCC-A
* * * ** *
2273938 GCATGTGCCGATGGTGTTCAATGCAACCGCCTGCACCAGGGTCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGTCCA
* * * * *
2273983 TCTTGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCA
2274021 AGGATTGGTA
Statistics
Matches: 67, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 65 0.97
46 2 0.03
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGTCCA
Found at i:2276635 original size:26 final size:26
Alignment explanation
Indices: 2276606--2276658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2276596 GTTGACTTAG
2276606 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
* *
2276632 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTTATCCCCAGTCTAA
2276658 G
1 G
2276659 AGCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTTATCCCCAGTCTAA
Found at i:2277483 original size:45 final size:45
Alignment explanation
Indices: 2277405--2277607 Score: 131
Period size: 45 Copynumber: 4.5 Consensus size: 45
2277395 GGGCTCAGCC
* * * *
2277405 TGTGTCGATGGTGGTCGAGGCAGCCGCCTGCACCATGACCCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACCCAACA
* * * ** * *
2277450 TGTGCCGATGGTGTTCGATGCAACTGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACCCAACA
* * *** * **
2277495 TGTGCCGATGGTGGTCGAGGGAATCGCCTTTACCAATGG--TCGGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-A-GGACCCAACA
* * * * *
2277540 TGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACCCAACA
* **
2277585 TGTGTCGATGGCAGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2277608 GTGCCCGTAC
Statistics
Matches: 117, Mismatches: 37, Indels: 8
0.72 0.23 0.05
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 111 0.95
46 1 0.01
47 2 0.02
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.20
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGACCCAACA
Found at i:2277619 original size:90 final size:90
Alignment explanation
Indices: 2277448--2277620 Score: 222
Period size: 90 Copynumber: 1.9 Consensus size: 90
2277438 CATGACCCAA
* * * * * **
2277448 CATGTGCCGATGGTGTTCGATGCAACTGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCAGTCGA
* **
2277513 GGGAATCGCCTTTACCAATGGTCGG
66 GGCAATCGCCCGTACCAATGGTCGG
* *
2277538 CATGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAGGGCCCAGCTTGTGTCGATGGCAGTCGA
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCAGTCGA
2277603 GGCAAGT-GCCCGTACCAA
66 GGCAA-TCGCCCGTACCAA
2277621 AGGGTAGCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
90 69 0.99
91 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.20
Consensus pattern (90 bp):
CATGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCAGTCGA
GGCAATCGCCCGTACCAATGGTCGG
Found at i:2278584 original size:26 final size:26
Alignment explanation
Indices: 2278548--2278598 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
2278538 TTGACTTAGG
2278548 CATACAGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
2278574 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
2278599 TATCAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:2280571 original size:26 final size:26
Alignment explanation
Indices: 2280535--2280587 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2280525 GTTGACTTAG
*
2280535 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
2280561 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2280587 G
1 G
2280588 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2280920 original size:26 final size:26
Alignment explanation
Indices: 2280890--2280942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2280880 GTTGACTTAG
2280890 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2280916 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2280942 G
1 G
2280943 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2288802 original size:45 final size:45
Alignment explanation
Indices: 2288690--2288858 Score: 167
Period size: 45 Copynumber: 3.7 Consensus size: 45
2288680 GGGGGGGTTT
* * *
2288690 GGGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCA
1 GGGGC-CAGCTTGTGCCGATGGTGGTCAAGGCAACCGCCCACACCA
* * * * * * * * **
2288736 TGGCCCAGCATGTGTCGATGGTGTTCGATGCAACCGCTCGTACCA
1 GGGGCCAGCTTGTGCCGATGGTGGTCAAGGCAACCGCCCACACCA
* *
2288781 GGGGCCATCTTGTGCCTATGGTGGTCAAGGCAACCGCCCACACCA
1 GGGGCCAGCTTGTGCCGATGGTGGTCAAGGCAACCGCCCACACCA
* * *
2288826 GGGTCCAGCTTGTGCCGATGGCGGTCGAGGCAA
1 GGGGCCAGCTTGTGCCGATGGTGGTCAAGGCAA
2288859 GTGCCCGTAC
Statistics
Matches: 97, Mismatches: 26, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
45 94 0.97
46 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
GGGGCCAGCTTGTGCCGATGGTGGTCAAGGCAACCGCCCACACCA
Found at i:2288868 original size:90 final size:90
Alignment explanation
Indices: 2288701--2288870 Score: 223
Period size: 90 Copynumber: 1.9 Consensus size: 90
2288691 GGGCTCAGCA
* * * * * *
2288701 TGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCCAGCATGTGTCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCATGTGCCGATGGCGGTCGAGG
*
2288766 CAACCGCTCGTACCAGGGGCCATCT
66 CAACCGCCCGTACCAGGGGCCATCT
* * * *
2288791 TGTGCCTATGGTGGTCAAGGCAACCGCCCACACCAGGGTCCAGCTTGTGCCGATGGCGGTCGAGG
1 TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCATGTGCCGATGGCGGTCGAGG
**
2288856 CAAGTGCCCGTACCA
66 CAACCGCCCGTACCA
2288871 AAGGGTAGCC
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
90 67 1.00
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCATGTGCCGATGGCGGTCGAGG
CAACCGCCCGTACCAGGGGCCATCT
Found at i:2288885 original size:90 final size:90
Alignment explanation
Indices: 2288691--2288886 Score: 205
Period size: 90 Copynumber: 2.2 Consensus size: 90
2288681 GGGGGGTTTG
* * * *
2288691 GGGCTCAGCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCATGGCCCAGCATGTGTCGATG
1 GGGC-CAGCCTGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCATGTGCCGATG
* * * * *
2288756 GTGTTCGATGCAACCGCTCGTACCAG
65 GCGGTCGAGGCAACCGCCCGTACCAA
* * * * * *
2288782 GGGCCATCTTGTGCCTATGGTGGTCAAGGCAACCGCCCACACCAGGGTCCAGCTTGTGCCGATGG
1 GGGCCAGCCTGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCATGTGCCGATGG
**
2288847 CGGTCGAGGCAAGTGCCCGTACCAAA
66 CGGTCGAGGCAACCGCCCGTACC-AA
*
2288873 GGG-TAGCCTGTGCC
1 GGGCCAGCCTGTGCC
2288887 ACTGATGGTC
Statistics
Matches: 85, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
90 77 0.91
91 8 0.09
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (90 bp):
GGGCCAGCCTGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCATGTGCCGATGG
CGGTCGAGGCAACCGCCCGTACCAA
Found at i:2289833 original size:26 final size:26
Alignment explanation
Indices: 2289796--2289853 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
2289786 CGTGGGTTGA
*
2289796 CTAAGGCATACGGAGTTCATCCCCAGT
1 CTAA-GCATACGGAGTTCATCCCCAAT
*
2289823 CTAAGCATACGGAGTTCATTCCCAAT
1 CTAAGCATACGGAGTTCATCCCCAAT
2289849 CTAAG
1 CTAAG
2289854 ATCGAACCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATCCCCAAT
Found at i:2290186 original size:26 final size:26
Alignment explanation
Indices: 2290157--2290209 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2290147 TTTCACTCAG
* *
2290157 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGCTCATTCACAGTCTAA
* *
2290183 GCATACGGTGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCACAGTCTAA
2290209 G
1 G
2290210 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCACAGTCTAA
Found at i:2291735 original size:26 final size:26
Alignment explanation
Indices: 2291705--2291757 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2291695 GTTGACTTAG
*
2291705 GCATATAAAGTTCATCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
** *
2291731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
2291757 G
1 G
2291758 ATCAAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:2292097 original size:26 final size:26
Alignment explanation
Indices: 2292061--2292113 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2292051 GTTGACTTAG
2292061 GCATATGGAGTTCAGTCCCAGTCTAA
1 GCATATGGAGTTCAGTCCCAGTCTAA
*
2292087 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCAGTCCCAGTCTAA
2292113 G
1 G
2292114 ATTGGACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCAGTCCCAGTCTAA
Found at i:2292612 original size:26 final size:26
Alignment explanation
Indices: 2292576--2292654 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2292566 TGTGGTCGAG
2292576 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2292602 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2292628 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2292654 G
1 G
2292655 ATCAGACTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2293785 original size:44 final size:44
Alignment explanation
Indices: 2293648--2293801 Score: 148
Period size: 45 Copynumber: 3.5 Consensus size: 44
2293638 GGGCTCGACA
* *
2293648 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCG-CCGCACCAGGGCCCAACT
* * * * * * *
2293693 TATGTCGATGGTGTTCGATGCAACTGCCTGCACCATGTG-CCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCC-GCACCA-GGGCCCAACT
* * *
2293738 TGTGCTGATGGTGGTCGAGGCAACCGTCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCGCACCAGGGCCCAACT
* *
2293782 TGTGCCGATGGCGATCGAGG
1 TGTGCCGATGGTGGTCGAGG
2293802 TAAGTGCCCG
Statistics
Matches: 85, Mismatches: 21, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
43 2 0.02
44 30 0.35
45 52 0.61
46 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCGCACCAGGGCCCAACT
Found at i:2295669 original size:45 final size:45
Alignment explanation
Indices: 2295566--2295758 Score: 190
Period size: 45 Copynumber: 4.3 Consensus size: 45
2295556 CGGGGCTCGA
* * *
2295566 CATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * * ** *
2295611 CATGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGTCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * * ** * *
2295656 CTTGTGCCTATGGTGGTCGAGGCAATCGCCAACACCAAGGGGCGA-
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAG
* * *
2295701 CATGTGCCAATGGTGATCGAGGCAACTGCCCGCACCAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
*
2295746 CTTGTGCCGATGG
1 CATGTGCCGATGG
2295759 CGGTTAAGGC
Statistics
Matches: 118, Mismatches: 28, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
44 6 0.05
45 106 0.90
46 6 0.05
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
Found at i:2297108 original size:26 final size:26
Alignment explanation
Indices: 2297078--2297130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2297068 GTTGACTTAG
*
2297078 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2297104 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2297130 G
1 G
2297131 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2306082 original size:26 final size:26
Alignment explanation
Indices: 2306053--2306105 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2306043 GTTGACTTAG
*
2306053 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2306079 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2306105 G
1 G
2306106 GTCAAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2306949 original size:45 final size:45
Alignment explanation
Indices: 2306877--2307036 Score: 176
Period size: 45 Copynumber: 3.6 Consensus size: 45
2306867 CGGGGCTCGA
* *
2306877 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCATCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
* ** * * * *
2306922 CATGTGCCGATGGTGTTCGTTGTAACCGCCCGCACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
* * *
2306967 CTTGTGCCGATAGTGGTCGAGGCAACCGCTCGCACCAAGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
* * * *
2307012 CTTGTGCCAATGGCGGTCGCGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2307037 GTGCCCATAC
Statistics
Matches: 93, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
Found at i:2308004 original size:26 final size:26
Alignment explanation
Indices: 2307968--2308020 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2307958 GTTGACTTAG
2307968 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2307994 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2308020 G
1 G
2308021 ATTGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2308375 original size:26 final size:26
Alignment explanation
Indices: 2308323--2308375 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2308313 GTTGACTTAG
* *
2308323 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2308349 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2308375 G
1 G
2308376 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2308921 original size:45 final size:45
Alignment explanation
Indices: 2308810--2308965 Score: 123
Period size: 45 Copynumber: 3.5 Consensus size: 45
2308800 GGGCCGACTG
* * * * * * *
2308810 GGGCTCAGCATGTGCTAATGGTGGTCAAGGTAACCGCTCGCACCA
1 GGGCCCAGCTTGTGCCAATGGTGGTCGAGGCAACCGCCCACACCA
** * * * * * *
2308855 CAGCCCTGCATGTGTCGATGGTGTTCGATGCAACCGCCCACACCA
1 GGGCCCAGCTTGTGCCAATGGTGGTCGAGGCAACCGCCCACACCA
* * * * *
2308900 GGGGCCATCTTGTGCCAATGGTGGTCGAGGCAATCGCTCGCACCA
1 GGGCCCAGCTTGTGCCAATGGTGGTCGAGGCAACCGCCCACACCA
*
2308945 GGGCCCAGCTTGTGCCGATGG
1 GGGCCCAGCTTGTGCCAATGG
2308966 CGATCGAAGC
Statistics
Matches: 82, Mismatches: 29, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (45 bp):
GGGCCCAGCTTGTGCCAATGGTGGTCGAGGCAACCGCCCACACCA
Found at i:2309967 original size:26 final size:26
Alignment explanation
Indices: 2309930--2309982 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2309920 GTTGACTTAG
* *
2309930 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
*
2309956 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATCCCCAGCCTAA
2309982 G
1 G
2309983 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGCCTAA
Found at i:2310302 original size:26 final size:26
Alignment explanation
Indices: 2310273--2310325 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2310263 GTTGAGTTAG
*
2310273 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
2310299 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2310325 G
1 G
2310326 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2310858 original size:13 final size:13
Alignment explanation
Indices: 2310840--2310864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2310830 ATGGTTGATG
2310840 CATGTGCCATCAC
1 CATGTGCCATCAC
2310853 CATGTGCCATCA
1 CATGTGCCATCA
2310865 TATGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2311770 original size:26 final size:26
Alignment explanation
Indices: 2311740--2311792 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2311730 GTTGACTTAG
*
2311740 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
2311766 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2311792 G
1 G
2311793 GTCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2312322 original size:45 final size:45
Alignment explanation
Indices: 2312271--2312475 Score: 194
Period size: 45 Copynumber: 4.6 Consensus size: 45
2312261 TCTTGCTCGA
* * *
2312271 CATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAG
* * * * *
2312316 CATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAG
* * * * * *
2312361 CTTATGCCGATGGTGGTCGAGGCAATCACTCACACCAAGGGCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAG
* * * * * *
2312406 CATGTGCCAATGGTGATCAAGGCAACCACCCGTACCAGGGCCTAG
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAG
* * * *
2312451 CTTATGCCCATGGCGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2312476 GTGCCCGTAC
Statistics
Matches: 127, Mismatches: 33, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 127 1.00
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAG
Found at i:2312431 original size:90 final size:90
Alignment explanation
Indices: 2312275--2312475 Score: 260
Period size: 90 Copynumber: 2.2 Consensus size: 90
2312265 GCTCGACATG
* * * * * * *
2312275 TGCCGATGGTGGTCGAGGCAATCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCA
1 TGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGCCCAGCATGTGCCAATGGTGATCAAGGCA
* *
2312340 ACCGCCCGCACCAAGGGCC-ATCTTA
66 ACCACCCGCACC-AGGGCCTAGCTTA
* *
2312365 TGCCGATGGTGGTCGAGGCAATCACTCACACCAAGGGCCAGCATGTGCCAATGGTGATCAAGGCA
1 TGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGCCCAGCATGTGCCAATGGTGATCAAGGCA
*
2312430 ACCACCCGTACCAGGGCCTAGCTTA
66 ACCACCCGCACCAGGGCCTAGCTTA
* *
2312455 TGCCCATGGCGGTCGAGGCAA
1 TGCCGATGGTGGTCGAGGCAA
2312476 GTGCCCGTAC
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
89 6 0.06
90 90 0.94
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.16
Consensus pattern (90 bp):
TGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGCCCAGCATGTGCCAATGGTGATCAAGGCA
ACCACCCGCACCAGGGCCTAGCTTA
Found at i:2314432 original size:44 final size:44
Alignment explanation
Indices: 2314280--2314436 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 44
2314270 GGGCTCGGCA
* * * *
2314280 TGTGTCGATGGTGGTCGAAGCAACCGCCCGCACCACGGCTCAGCA
1 TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCAGGGC-CAGCT
* * * * *
2314325 TGTGCCAATGGTGTTCGATGCAACTGCCCGCACCAGGGGCCATCT
1 TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCAGCT
*
2314370 TGTG-CTGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCAGCT
1 TGTGTC-AATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCAGCT
* *
2314414 TGTGTCAATGGCGATCGAGGCAA
1 TGTGTCAATGGTGGTCGAGGCAA
2314437 GTGCCTGTAC
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
44 27 0.29
45 63 0.68
46 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (44 bp):
TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCAGCT
Found at i:2315408 original size:26 final size:26
Alignment explanation
Indices: 2315379--2315431 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2315369 GTTGAGTTAG
* *
2315379 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
* *
2315405 GCATACGGAGTGCATTCCTAGTCTAA
1 GCATACGGAGTGCATCCCCAGTCTAA
2315431 G
1 G
2315432 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTGCATCCCCAGTCTAA
Found at i:2315765 original size:25 final size:26
Alignment explanation
Indices: 2315731--2315786 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
2315721 TGGGTTGACT
2315731 TAAGAATATGGAGTTCA-TACCAGTC
1 TAAGAATATGGAGTTCATTACCAGTC
* *
2315756 TAAGCATATGGAGTTCATTCCCAGTC
1 TAAGAATATGGAGTTCATTACCAGTC
2315782 TAAGA
1 TAAGA
2315787 TCGGACTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGAATATGGAGTTCATTACCAGTC
Found at i:2316086 original size:26 final size:26
Alignment explanation
Indices: 2316056--2316105 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
2316046 GACTTAGGCG
2316056 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
2316082 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
2316106 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:2316133 original size:319 final size:319
Alignment explanation
Indices: 2315538--2316139 Score: 800
Period size: 319 Copynumber: 1.9 Consensus size: 319
2315528 CTCTGACCGA
*
2315538 CTGAGCGACCGCACGCTCGTTTCGTGGGTTGGCTTAGGCAAACAGAGTTCATTCCATATTTAAGC
1 CTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCATATTTAAGC
* * * * *
2315603 CCTAGCCAGACCGAGGGTTGTGGCAGCAGGACCGGCAGCATGGAGAGGGGGACCGGGCTGATCCT
66 CCCAGCCAGAACGAGGGTTGTGGCAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCCGATCCT
* * * *
2315668 CGGTTTACGCATTATGCCTCTCCGGTCGGCTCAACGCCCGCACACTCGTTTCGTGGGTTGACTTA
131 CGGCTTACGCATTATGCCTCTCCGATCGGCTCAACGCCCGCACACTCGTTTCATAGGTTGACTTA
* * * * * *
2315733 AGAATATGGAGTTCATACCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGCA
196 AGAATACGAAGTTCATACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGCA
2315798 GCAGCACAGTGAGGGGGACCGGGCAGAACCTCAGTTGCGTATCCTGCCTCTTCGGTCAG
261 GCAGCACAGTGAGGGGGACCGGGCAGAACCTCAGTTGCGTATCCTGCCTCTTCGGTCAG
* * * *
2315857 CTGAGC-ACCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCATGTTTAAG
1 CTGAGCGA-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCATATTTAAG
* * * * *
2315921 CCCCAGCC-GAAATGAGGGTTGTGGCAGCGGGACCGACAGCACGTAGAGGGGGATCGGGCCGGTC
65 CCCCAGCCAG-AACGAGGGTTGTGGCAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCCGATC
* * * ** **
2315985 CTTGGCTTGCGCATTATGCCTCTCTGATCGGCTCAGTGCCCGCACGTTCGTTTCATAGGTTGACT
129 CTCGGCTTACGCATTATGCCTCTCCGATCGGCTCAACGCCCGCACACTCGTTTCATAGGTTGACT
* ** *
2316050 TAGGCGTACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACC-
194 TAAGAATACGAAGTTCA-TACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCG
2316114 G-AG-AGCACACGTAGAGGGGGACCGGG
258 GCAGCAGCACA-GT-GAGGGGGACCGGG
2316140 TCGATCTTCG
Statistics
Matches: 242, Mismatches: 36, Indels: 10
0.84 0.12 0.03
Matches are distributed among these distances:
317 6 0.02
318 6 0.02
319 189 0.78
320 41 0.17
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (319 bp):
CTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCATATTTAAGC
CCCAGCCAGAACGAGGGTTGTGGCAGCAGGACCGACAGCACGGAGAGGGGGACCGGGCCGATCCT
CGGCTTACGCATTATGCCTCTCCGATCGGCTCAACGCCCGCACACTCGTTTCATAGGTTGACTTA
AGAATACGAAGTTCATACCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGCA
GCAGCACAGTGAGGGGGACCGGGCAGAACCTCAGTTGCGTATCCTGCCTCTTCGGTCAG
Found at i:2317586 original size:26 final size:26
Alignment explanation
Indices: 2317534--2317586 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2317524 GTTGACTTAG
* *
2317534 GCATACGGAGTTCATCCCTAGTTTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
2317560 GCATACAGAGTTCATTCCC-AGTCTAA
1 GCATACAGAGTTCA-TCCCTAGTCTAA
2317586 G
1 G
2317587 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:2318467 original size:45 final size:44
Alignment explanation
Indices: 2318395--2318554 Score: 167
Period size: 45 Copynumber: 3.6 Consensus size: 44
2318385 CGAGGCTCGA
* *
2318395 CATGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCAG
* * * * * * *
2318440 CATGTGCCGATGGTGTTCGATGTAACCGCCCACACTAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCAG
* * *
2318485 CTTGTGCCGATGGTGGTAGAGGCAACCGCTCGCACCAGAGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAG-GCCCAG
* *
2318530 CTTGTGCCGATGGCGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2318555 GTGCCCGTAC
Statistics
Matches: 92, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 1 0.01
45 91 0.99
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGCCCAG
Found at i:2318581 original size:90 final size:90
Alignment explanation
Indices: 2318404--2318591 Score: 193
Period size: 90 Copynumber: 2.1 Consensus size: 90
2318394 ACATGTGTCA
* * * * *
2318404 ATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGTAACCGC
1 ATGGTGGTAGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGCGGTCGAGGCAACCGC
* * * *
2318469 CCACACTAGGGGCCATCTTGTGCCG
66 CCACACAAAGGGCCAGCCTGTGCCG
* * **
2318494 ATGGTGGTAGAGGCAACCGCTCGCACCA-GAGCCCAGCTTGTGCCGATGGCGGTCGAGGCAAGTG
1 ATGGTGGTAGAGGCAACCGCCCGCACCACG-GCCCAGCATGTGCCGATGGCGGTCGAGGCAACCG
*
2318558 CCCGTAC-CAAAGGG-CAGCCTGTGCTG
65 CCC--ACACAAAGGGCCAGCCTGTGCCG
*
2318584 ATGATGGT
1 ATGGTGGT
2318592 CGATGCATGT
Statistics
Matches: 80, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
89 1 0.01
90 72 0.90
91 5 0.06
92 2 0.03
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.18
Consensus pattern (90 bp):
ATGGTGGTAGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGCGGTCGAGGCAACCGC
CCACACAAAGGGCCAGCCTGTGCCG
Found at i:2319705 original size:336 final size:336
Alignment explanation
Indices: 2319090--2319762 Score: 1193
Period size: 336 Copynumber: 2.0 Consensus size: 336
2319080 AAAAATCTCA
2319090 AACCGGAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACA
1 AACCGGAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACA
*
2319155 TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTGGCAGAAAT
66 TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* ** * *
2319220 ATGAAGATGTGCCTGAACCCACCTACCACTCGATCGATCCACGGCTTGTGCATCCCGCCTCTCTG
131 ATGAAGATGTGCCTGAACCCACCTACCACTCAAAAGATCCACGGCTTGCGCATCCCGCCTCTCCG
**
2319285 GTCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTC
196 ACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTC
*
2319350 TAAGATTAGATCGGACCAAAGGTTGCGGTAGTAGGACCCGTAGCGGGATCGACAGCACGCAGAAG
261 TAAGATTAGATCAGACCAAAGGTTGCGGTAGTAGGACCCGTAGCGGGATCGACAGCACGCAGAAG
2319415 GGACTGGGTCG
326 GGACTGGGTCG
2319426 AACCGGAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACA
1 AACCGGAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACA
*
2319491 TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
66 TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * * * *
2319556 ATGCAGATGTGCCTTAACCCACCTACCACTCAAAATATCCACGGCTTGCGCATCTCGTCTCTCCG
131 ATGAAGATGTGCCTGAACCCACCTACCACTCAAAAGATCCACGGCTTGCGCATCCCGCCTCTCCG
* *
2319621 ACCGGCTAAGTGCCGGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTC
196 ACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTC
2319686 TAAGATTAGATCAGACCAAAGGTTGCGGTAGTAGGACCCGTAGCGGGATCGACAGCACGCAGAAG
261 TAAGATTAGATCAGACCAAAGGTTGCGGTAGTAGGACCCGTAGCGGGATCGACAGCACGCAGAAG
2319751 GGACTGGGTCG
326 GGACTGGGTCG
2319762 A
1 A
2319763 TCCCCGACTT
Statistics
Matches: 320, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
336 320 1.00
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (336 bp):
AACCGGAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACA
TGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
ATGAAGATGTGCCTGAACCCACCTACCACTCAAAAGATCCACGGCTTGCGCATCCCGCCTCTCCG
ACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTC
TAAGATTAGATCAGACCAAAGGTTGCGGTAGTAGGACCCGTAGCGGGATCGACAGCACGCAGAAG
GGACTGGGTCG
Found at i:2320464 original size:45 final size:45
Alignment explanation
Indices: 2320415--2320519 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
2320405 GCATTTGCAG
* * * * * * *
2320415 ATGGTGTTCGATGCAACCACTCGCACCAGGGGCCATCTTGTGCCA
1 ATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAACTTGTGCCA
*
2320460 ATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAACTTGTGCCG
1 ATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAACTTGTGCCA
*
2320505 ATGGCGGTCGAGGCA
1 ATGGTGGTCGAGGCA
2320520 GGTTCTCGTA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACCACCCACACCAAGGCCCAACTTGTGCCA
Found at i:2320806 original size:26 final size:26
Alignment explanation
Indices: 2320770--2320822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2320760 GTTGACTTAG
2320770 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2320796 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2320822 G
1 G
2320823 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2321382 original size:45 final size:45
Alignment explanation
Indices: 2321279--2321387 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
2321269 AATGATGGTT
* * **
2321279 GAGGCAACTGCCCCCACCATGGCCCAGCTTGTGCCGATGGTGTTC
1 GAGGCAACTGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCATTC
* * * **
2321324 GAGGTAACCGCCCGCACCAGGGCCTAGCTTGTGTTGATGGCATTC
1 GAGGCAACTGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCATTC
* *
2321369 GAGGCAAGTGCCCGTACCA
1 GAGGCAACTGCCCGCACCA
2321388 AAGGGTAGCC
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
GAGGCAACTGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCATTC
Found at i:2324707 original size:26 final size:26
Alignment explanation
Indices: 2324677--2324729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2324667 GTTGACTTAG
*
2324677 GCATATGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
*
2324703 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
2324729 G
1 G
2324730 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:2325056 original size:26 final size:26
Alignment explanation
Indices: 2325019--2325071 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2325009 GTTGACTTAG
2325019 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
2325045 GCATAC-GAAGTTCATTCTTAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
2325071 G
1 G
2325072 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2326635 original size:26 final size:26
Alignment explanation
Indices: 2326605--2326657 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2326595 GTTGACTTAT
*
2326605 GCATACAGAGTTCA-TCCACAGTCTAA
1 GCATACAAAGTTCATTCC-CAGTCTAA
2326631 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
2326657 G
1 G
2326658 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:2327596 original size:45 final size:45
Alignment explanation
Indices: 2327472--2327596 Score: 108
Period size: 45 Copynumber: 2.8 Consensus size: 45
2327462 AACATGTGTC
** * * * *
2327472 GATGGTGGTCGAGGGGATCGCCCACACCACGGCCCAACATGTGCT
1 GATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAACATATGCT
* * * * * * * *
2327517 GATGGCGTTCGATGCAACCACCCGTACCAGGGGCCATA-TTATGCT
1 GATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCA-ACATATGCT
2327562 GATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCC
1 GATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCC
2327597 GGCATGTACC
Statistics
Matches: 59, Mismatches: 20, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAACATATGCT
Found at i:2328647 original size:26 final size:26
Alignment explanation
Indices: 2328611--2328663 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2328601 GTTGACTTAG
2328611 GCATACAGAGTTCA-TCCTCAGTCTAA
1 GCATACAGAGTTCATTCC-CAGTCTAA
*
2328637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2328663 G
1 G
2328664 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2329209 original size:45 final size:45
Alignment explanation
Indices: 2329138--2329343 Score: 198
Period size: 45 Copynumber: 4.6 Consensus size: 45
2329128 TCGAGGCTCG
* * *
2329138 GCATATGCCGATGGTGGTCGAGGCAACCGCCCGCACCACAACCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
* * * * * *
2329183 GCATGTGCCGATGGTGCTCGATGCAACTGCCCGTACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
* * * * *
2329228 TCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCA-AGGGCCG
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGA-GCCCA
* * * * *
2329273 GCATGTGTCGATGGTGATCGAGGCAACCGTCCACACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
* * *
2329318 GCTTGTGCCGATGGCGATCGAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
2329344 GTGCCCGTAC
Statistics
Matches: 128, Mismatches: 31, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
45 128 1.00
ACGTcount: A:0.20, C:0.32, G:0.33, T:0.16
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCA
Found at i:2329299 original size:90 final size:89
Alignment explanation
Indices: 2329143--2329357 Score: 252
Period size: 90 Copynumber: 2.4 Consensus size: 89
2329133 GCTCGGCATA
* * *
2329143 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCACAACCCAGCATGTGCCGATGGTGCTCGATGCA
1 TGCCGATGGTGGTCGAGGCAATCGCCCGCACCA-AACCCAGCATGTGCCGATGGTGATCGAGGCA
* ** * *
2329208 ACTGCCCGTACCAGGGGCCATCTTG
65 ACCGCCCACACCAGGGCCCAGCTTG
** * *
2329233 TGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCGGCATGTGTCGATGGTGATCGAGGCA
1 TGCCGATGGTGGTCGAGGCAATCGCCCGCACCAA-ACCCAGCATGTGCCGATGGTGATCGAGGCA
*
2329298 ACCGTCCACACCAGGGCCCAGCTTG
65 ACCGCCCACACCAGGGCCCAGCTTG
* * *
2329323 TGCCGATGGCGATCGAGGCAAGT-GCCCGTACCAAA
1 TGCCGATGGTGGTCGAGGCAA-TCGCCCGCACCAAA
2329358 GGGTAGCCTA
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
89 1 0.01
90 104 0.98
91 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (89 bp):
TGCCGATGGTGGTCGAGGCAATCGCCCGCACCAAACCCAGCATGTGCCGATGGTGATCGAGGCAA
CCGCCCACACCAGGGCCCAGCTTG
Found at i:2329381 original size:135 final size:135
Alignment explanation
Indices: 2329136--2329383 Score: 300
Period size: 135 Copynumber: 1.8 Consensus size: 135
2329126 GATCGAGGCT
* * * *
2329136 CGGCATATGCCGATGGTGGTCGAGGCAACCGCCCGCACCACAACCCAGCATGTGCCGATGGTGCT
1 CGGCATATGCCGATGGTGATCGAGGCAACCGCCCACACCACAACCCAGCATGTGCCGATGGCGAT
* * * * * **
2329201 CGATGCAACTGCCCGTACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCA
66 CGAGGCAACTGCCCGTACCAAGGGCCAGCCTATGCCGATCATGGTCGAGGCAATCGCCCGCACCA
2329266 AGGGC
131 AGGGC
* * * *** *
2329271 CGGCATGTGTCGATGGTGATCGAGGCAACCGTCCACACCAGGGCCCAGCTTGTGCCGATGGCGAT
1 CGGCATATGCCGATGGTGATCGAGGCAACCGCCCACACCACAACCCAGCATGTGCCGATGGCGAT
* *
2329336 CGAGGCAAGTGCCCGTACCAAAGGG-TAGCCTATGCCGATCATGGTCGA
66 CGAGGCAACTGCCCGTACC-AAGGGCCAGCCTATGCCGATCATGGTCGA
2329384 TGCATATGCC
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
135 88 0.96
136 4 0.04
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (135 bp):
CGGCATATGCCGATGGTGATCGAGGCAACCGCCCACACCACAACCCAGCATGTGCCGATGGCGAT
CGAGGCAACTGCCCGTACCAAGGGCCAGCCTATGCCGATCATGGTCGAGGCAATCGCCCGCACCA
AGGGC
Found at i:2330638 original size:45 final size:46
Alignment explanation
Indices: 2330551--2330645 Score: 115
Period size: 45 Copynumber: 2.1 Consensus size: 46
2330541 AGGGGGACCG
* *
2330551 GGCCCAGCATGTGCCGATGGTGGTCGAGACAATTGTCCGCACCA-T
1 GGCCCAGCATATGCCGATGGTGGTCGAGACAATCGTCCGCACCAGT
* *
2330596 GGCCCAGCATATGCCGATGGTGTTCTATG-CAATCG-CCTGCACCAGT
1 GGCCCAGCATATGCCGATGGTGGTCGA-GACAATCGTCC-GCACCAGT
2330642 GGCC
1 GGCC
2330646 ATCTTGTGCC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
44 2 0.05
45 35 0.81
46 6 0.14
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (46 bp):
GGCCCAGCATATGCCGATGGTGGTCGAGACAATCGTCCGCACCAGT
Found at i:2332042 original size:26 final size:26
Alignment explanation
Indices: 2332005--2332057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2331995 GTTGACTTAG
*
2332005 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2332031 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2332057 G
1 G
2332058 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2332669 original size:45 final size:45
Alignment explanation
Indices: 2332564--2332657 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
2332554 GGTGTTCAAT
** * * *
2332564 GCAACCACCCACACCAGGGGCCATCTTGTGCCAATGGTGGTCGAG
1 GCAACCACCCGTACCAGGGCCCAGCTTGTGCCAATGGCGGTCGAG
* *
2332609 GCAACCACCCGTACCAGGGCCCAGCTTTTGCCGATGGCGGTCGAG
1 GCAACCACCCGTACCAGGGCCCAGCTTGTGCCAATGGCGGTCGAG
2332654 GCAA
1 GCAA
2332658 GTGCCCGTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (45 bp):
GCAACCACCCGTACCAGGGCCCAGCTTGTGCCAATGGCGGTCGAG
Found at i:2333632 original size:26 final size:26
Alignment explanation
Indices: 2333596--2333648 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2333586 GTTGACTTTG
2333596 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2333622 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2333648 G
1 G
2333649 ATAGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2334509 original size:45 final size:45
Alignment explanation
Indices: 2334413--2334636 Score: 182
Period size: 45 Copynumber: 5.0 Consensus size: 45
2334403 CAGAATATGT
* * * * * *
2334413 CGATGGTGGTCAAGGCAATCGTCCGCACC-ACGACTCAGCATGTGC
1 CGATGGTGGTCGAGGCAAGCGCCCGCACCAAGGGC-CAGCTTGTGC
** * * * * *
2334458 TAATGGTGTTCGATGCAAGCGCCCGTACCAGGGGCCATCTTGTGC
1 CGATGGTGGTCGAGGCAAGCGCCCGCACCAAGGGCCAGCTTGTGC
* * * * *
2334503 CGATGGTGGTCAAGGAAAACGCCCGCACCAAGGGCCGGCATGTGC
1 CGATGGTGGTCGAGGCAAGCGCCCGCACCAAGGGCCAGCTTGTGC
* * * *
2334548 CGATGGTGATCGAAGCAACCGCCCGCACCAAGGCCCAGCTTGTGC
1 CGATGGTGGTCGAGGCAAGCGCCCGCACCAAGGGCCAGCTTGTGC
* * **
2334593 CGATGGCGGTCGAGGCAAGTGCCCATACCAAAGGG-CAGCTTGTG
1 CGATGGTGGTCGAGGCAAGCGCCCGCACC-AAGGGCCAGCTTGTG
2334637 TGCATTTTGG
Statistics
Matches: 136, Mismatches: 41, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
45 130 0.96
46 6 0.04
ACGTcount: A:0.22, C:0.29, G:0.32, T:0.17
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAAGCGCCCGCACCAAGGGCCAGCTTGTGC
Found at i:2334571 original size:90 final size:90
Alignment explanation
Indices: 2334413--2334603 Score: 222
Period size: 90 Copynumber: 2.1 Consensus size: 90
2334403 CAGAATATGT
* * * * * * *
2334413 CGATGGTGGTCAAGGCAATCGTCCGCACCACGACTCAGCATGTGCTAATGGTGTTCGATGCAAGC
1 CGATGGTGGTCAAGGAAAACGCCCGCACCACGACTCAGCATGTGCCAATGGTGATCGAAGCAACC
* * * *
2334478 GCCCGTACCAGGGGCCATCTTGTGC
66 GCCCGCACCAAGGCCCAGCTTGTGC
* * * *
2334503 CGATGGTGGTCAAGGAAAACGCCCGCACCAAGGGC-CGGCATGTGCCGATGGTGATCGAAGCAAC
1 CGATGGTGGTCAAGGAAAACGCCCGCACC-ACGACTCAGCATGTGCCAATGGTGATCGAAGCAAC
2334567 CGCCCGCACCAAGGCCCAGCTTGTGC
65 CGCCCGCACCAAGGCCCAGCTTGTGC
*
2334593 CGATGGCGGTC
1 CGATGGTGGTC
2334604 GAGGCAAGTG
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 81 0.96
91 3 0.04
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (90 bp):
CGATGGTGGTCAAGGAAAACGCCCGCACCACGACTCAGCATGTGCCAATGGTGATCGAAGCAACC
GCCCGCACCAAGGCCCAGCTTGTGC
Found at i:2334623 original size:90 final size:91
Alignment explanation
Indices: 2334450--2334628 Score: 207
Period size: 90 Copynumber: 2.0 Consensus size: 91
2334440 CCACGACTCA
* * * * * * * * *
2334450 GCATGTGCTAATGGTGTTCGATGCAAGCGCCCGTACCAGGGGCCATCTTGTGCCGATGGTGGTCA
1 GCATGTGCCAATGGTGATCGAAGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGCGGTCA
*
2334515 AGGAAAACGCCCGCACC-AAGGGCCG
66 AGGAAAACGCCCACACCAAAGGGCCG
* *
2334540 GCATGTGCCGATGGTGATCGAAGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGCGGTCG
1 GCATGTGCCAATGGTGATCGAAGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGCGGTCA
* ** *
2334605 AGGCAAGTGCCCATACCAAAGGGC
66 AGGAAAACGCCCACACCAAAGGGC
2334629 AGCTTGTGTG
Statistics
Matches: 72, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
90 66 0.92
91 6 0.08
ACGTcount: A:0.22, C:0.30, G:0.33, T:0.16
Consensus pattern (91 bp):
GCATGTGCCAATGGTGATCGAAGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATGGCGGTCA
AGGAAAACGCCCACACCAAAGGGCCG
Found at i:2334901 original size:26 final size:26
Alignment explanation
Indices: 2334865--2334917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2334855 GTTGACTTAG
*
2334865 GCATACTGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
2334891 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
2334917 G
1 G
2334918 ATTAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:2336296 original size:26 final size:26
Alignment explanation
Indices: 2336266--2336317 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
2336256 GTTGACTTAG
2336266 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
2336292 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
2336318 AATCAGACCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:2337914 original size:45 final size:45
Alignment explanation
Indices: 2337711--2337916 Score: 146
Period size: 45 Copynumber: 4.6 Consensus size: 45
2337701 CCGGGGCTCG
* ** * * *
2337711 GCATGTGCCGATGGTGGTCGAGGCAACCGCTTGCACCACGGCCTA
1 GCATGTGCCGATGGTGATCGAGGCAACCGCCCGCACAAGGGCCCA
* * * *
2337756 GCATGTGCCGATGGTGTTCGATGCAACCGCCCGTACGAAGAG-CCA
1 GCATGTGCCGATGGTGATCGAGGCAACCGCCCGCAC-AAGGGCCCA
* * * ** *** *
2337801 TCTTGTGCCAATGGTGGCCGAGGCAATTTCCCGCACCAAGGGCCGA
1 GCATGTGCCGATGGTGATCGAGGCAACCGCCCGCA-CAAGGGCCCA
* * * * *
2337847 -CATGTGTCGATGCTCATTGAGGCAACCGCCCGCACTAGGGCCCA
1 GCATGTGCCGATGGTGATCGAGGCAACCGCCCGCACAAGGGCCCA
* *
2337891 GCTTGTGCCGATGGCGATCGAGGCAA
1 GCATGTGCCGATGGTGATCGAGGCAA
2337917 GTGTCCGTAC
Statistics
Matches: 117, Mismatches: 40, Indels: 8
0.71 0.24 0.05
Matches are distributed among these distances:
44 8 0.07
45 104 0.89
46 5 0.04
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (45 bp):
GCATGTGCCGATGGTGATCGAGGCAACCGCCCGCACAAGGGCCCA
Found at i:2339243 original size:26 final size:26
Alignment explanation
Indices: 2339213--2339265 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2339203 GTTGACTTAG
*
2339213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2339239 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2339265 G
1 G
2339266 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2340162 original size:171 final size:170
Alignment explanation
Indices: 2339868--2340196 Score: 383
Period size: 171 Copynumber: 1.9 Consensus size: 170
2339858 CGGATCAGAC
* * * * *
2339868 CGAGGGTTACGGTAGCAGGACCAGCAGCAGGATCGATAGCATGCAGGGGGGATCGGGTCGATCCC
1 CGAGGGTTACGGTAGCAGGACCAGCAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCC
* * * * * * *
2339933 CGGCTTGCGAATTTTGCCTCTACGGTCGACTGAGCACCCGCACGCTCTTTTTGTGGGTTGGCTTA
66 CGGCTTACGAATTATGCCTCTACGATCGACTCAGCACCCACACGCTCTTTTCGTGGGTTGACTTA
*
2339998 GCCATACGGAGCTCATT-CCATGTCTAAGGCCCAGCCGGAT
131 GCCATACAGAGCTCATTCCCAT-TCTAAGGCCCAGCCGGAT
** * * *
2340038 CGAGGGTTGTGGTAGCGGGACCGGCAGCGGGACCGACAGCACGCAGAGGGGGATCAGGCCGATCC
1 CGAGGGTTACGGTAGCAGGACCAGCAGCAGGACCGACAGCACGCAG-GGGGGATCAGGCCGATCC
* * * * * *
2340103 CCGGGTTACGCATTATGCCTCTCCGATCGGCTCAGCGCCCATACGCT-TGTTTCGTGGGTTGACT
65 CCGGCTTACGAATTATGCCTCTACGATCGACTCAGCACCCACACGCTCT-TTTCGTGGGTTGACT
* *
2340167 TAGGCATACAGAGTTCATTCCCATTCTAAG
129 TAGCCATACAGAGCTCATTCCCATTCTAAG
2340197 CATACAGAGT
Statistics
Matches: 130, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
170 39 0.30
171 87 0.67
172 4 0.03
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (170 bp):
CGAGGGTTACGGTAGCAGGACCAGCAGCAGGACCGACAGCACGCAGGGGGGATCAGGCCGATCCC
CGGCTTACGAATTATGCCTCTACGATCGACTCAGCACCCACACGCTCTTTTCGTGGGTTGACTTA
GCCATACAGAGCTCATTCCCATTCTAAGGCCCAGCCGGAT
Found at i:2340200 original size:26 final size:26
Alignment explanation
Indices: 2340170--2340222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2340160 GTTGACTTAG
*
2340170 GCATACAGAGTTCATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2340196 GCATACAGAGTTCATTCGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2340222 G
1 G
2340223 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2340716 original size:45 final size:45
Alignment explanation
Indices: 2340667--2340857 Score: 177
Period size: 45 Copynumber: 4.2 Consensus size: 45
2340657 GCTCGACATG
* *
2340667 TGCCGATGGTGTTCGATGCAATCGCCCGCACCAGGGGCCATCTTA
1 TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTA
* * * * * * *
2340712 TGCCGATAGTGGTCTAGGCAATCGCCCGCACCAAGGGTCGA-CATA
1 TGCCGATGGTGTTCGAGGCAACCGCCCGCACC-AGGGGCCATCTTA
* * ** * * *
2340757 TGCCGATGGTGATCGAGGCAACCGGCTACACCAGGGCCCAGCTTG
1 TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTA
* * * *
2340802 TGCCGATGGTGTTCGATGCAGCCACCCGCACCAGGGGCCATCTTG
1 TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTA
*
2340847 TGCCAATGGTG
1 TGCCGATGGTG
2340858 GTCAAGGTAA
Statistics
Matches: 116, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
44 6 0.05
45 104 0.90
46 6 0.05
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCATCTTA
Found at i:2340830 original size:90 final size:90
Alignment explanation
Indices: 2340659--2340834 Score: 199
Period size: 90 Copynumber: 2.0 Consensus size: 90
2340649 TGACCGGGGC
* * * * * * *
2340659 TCGACATGTGCCGATGGTGTTCGATGCAATCGCCCGCACCAGGGGCCATCTTATGCCGATAGTGG
1 TCGACATATGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTATGCCGATAGTGG
* * *
2340724 TCTAGGCAATCGCCCGCACCAAGGG
66 TCGAGGCAACCACCCGCACCAAGGG
* * * * *
2340749 TCGACATATGCCGATGGTGATCGAGGCAACCGGCTACACCAGGGCCCAGCTTGTGCCGATGGTGT
1 TCGACATATGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTATGCCGATAGTGG
* *
2340814 TCGATGCAGCCACCCGCACCA
66 TCGAGGCAACCACCCGCACCA
2340835 GGGGCCATCT
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
90 69 1.00
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (90 bp):
TCGACATATGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCCAGCTTATGCCGATAGTGG
TCGAGGCAACCACCCGCACCAAGGG
Found at i:2341805 original size:26 final size:26
Alignment explanation
Indices: 2341775--2341853 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
2341765 GTTGACTTAG
* *
2341775 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2341801 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2341827 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2341853 G
1 G
2341854 ATTAGACCAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2342644 original size:45 final size:45
Alignment explanation
Indices: 2342593--2342786 Score: 158
Period size: 45 Copynumber: 4.3 Consensus size: 45
2342583 CGGGGGCTTG
* * *
2342593 GCATGTGCCGATGATGGTTGAGGCAACCACCCGCACCAAGGTCCA
1 GCATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCCA
* * * * *
2342638 GCATGTGCTGATGGT-GTTCGATGCAACCGCCCACACTAGGGGCCA
1 GCATGTGCCGATGGTGGTT-GAGGCAACCGCCCGCACCAAGGGCCA
* * * * * *
2342683 TCTTGTGCCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCTA
1 GCATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCCA
* * * * * *
2342728 GCATGTGTCGATGGTGATCGAAGCAATCGCCCGCACC-GGGGCCCA
1 GCATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGG-CCA
* *
2342773 GCTTATGCCGATGG
1 GCATGTGCCGATGG
2342787 CGGTCGAAGC
Statistics
Matches: 116, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
44 6 0.05
45 108 0.93
46 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAAGGGCCA
Found at i:2342708 original size:90 final size:90
Alignment explanation
Indices: 2342596--2342798 Score: 230
Period size: 90 Copynumber: 2.3 Consensus size: 90
2342586 GGGCTTGGCA
* * * * *
2342596 TGTGCCGATGATGGTTGAGGCAACCACCCGCACCAAGGTCCAGCATGTG-CTGATGGTGTTCGAT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGGCCAGCATGTGTC-GATGGTGATCGAA
*
2342660 GCAACCGCCCACACTAGGGG-CCATCT
65 GCAACCGCCCACAC-AGGGGCCCAGCT
* * * *
2342686 TGTGCCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCTAGCATGTGTCGATGGTGATCGAAG
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGGCCAGCATGTGTCGATGGTGATCGAAG
* * *
2342751 CAATCGCCCGCACCGGGGCCCAGCT
66 CAACCGCCCACACAGGGGCCCAGCT
* * *
2342776 TATGCCGATGGCGGTCGAAGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2342799 GTGCCCGTAC
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
89 4 0.04
90 90 0.95
91 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGGCCAGCATGTGTCGATGGTGATCGAAG
CAACCGCCCACACAGGGGCCCAGCT
Found at i:2342794 original size:45 final size:45
Alignment explanation
Indices: 2342593--2342816 Score: 155
Period size: 45 Copynumber: 5.0 Consensus size: 45
2342583 CGGGGGCTTG
* * * * * * *
2342593 GCATGTGCCGATGATGGTTGAGGCAACCACCCGCACCAAGGTCCA
1 GCATATGCCGATGGTGGTCGAAGCAATCGCCCGCACCAAGGGCCA
* * * * * * * *
2342638 GCATGTGCTGATGGTGTTCGATGCAACCGCCCACACTAGGGGCCA
1 GCATATGCCGATGGTGGTCGAAGCAATCGCCCGCACCAAGGGCCA
* * * * * *
2342683 TCTTGTGCCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCTA
1 GCATATGCCGATGGTGGTCGAAGCAATCGCCCGCACCAAGGGCCA
* * * *
2342728 GCATGTGTCGATGGTGATCGAAGCAATCGCCCGCACC-GGGGCCCA
1 GCATATGCCGATGGTGGTCGAAGCAATCGCCCGCACCAAGGG-CCA
* * *
2342773 GCTTATGCCGATGGCGGTCGAAGCAAGT-GCCCGTACCAAAGGGC
1 GCATATGCCGATGGTGGTCGAAGCAA-TCGCCCGCACC-AAGGGC
2342817 AACCTGTGCT
Statistics
Matches: 139, Mismatches: 36, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
44 3 0.02
45 131 0.94
46 2 0.01
47 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.32, T:0.18
Consensus pattern (45 bp):
GCATATGCCGATGGTGGTCGAAGCAATCGCCCGCACCAAGGGCCA
Found at i:2342811 original size:90 final size:90
Alignment explanation
Indices: 2342622--2342830 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 90
2342612 GAGGCAACCA
* * * *
2342622 CCCGCACCAAGGTCCAGCATGTGCTGATGGTGTTCGATGCAACCGCCCACACTAGGGGCCATCTT
1 CCCGCACCAAGGGCCAGCATGTGCTGATGGTGATCGAAGCAACCGCCCACACTAGGGGCCAGCTT
* * *
2342687 GTGCCGATGGTGGTCGAGGCAATCG
66 ATGCCGATGGCGGTCGAAGCAATCG
* * * * *
2342712 CCTGCACCAAGGGCTAGCATGTG-TCGATGGTGATCGAAGCAATCGCCCGCAC-CGGGGCCCAGC
1 CCCGCACCAAGGGCCAGCATGTGCT-GATGGTGATCGAAGCAACCGCCCACACTAGGGG-CCAGC
2342775 TTATGCCGATGGCGGTCGAAGCAAGT-G
64 TTATGCCGATGGCGGTCGAAGCAA-TCG
* * *
2342802 CCCGTACCAAAGGG-CAACCTGTGCTGATG
1 CCCGCACC-AAGGGCCAGCATGTGCTGATG
2342831 ATGGTCAATG
Statistics
Matches: 97, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
89 5 0.05
90 85 0.88
91 7 0.07
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.18
Consensus pattern (90 bp):
CCCGCACCAAGGGCCAGCATGTGCTGATGGTGATCGAAGCAACCGCCCACACTAGGGGCCAGCTT
ATGCCGATGGCGGTCGAAGCAATCG
Found at i:2343616 original size:26 final size:26
Alignment explanation
Indices: 2343567--2343619 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2343557 GTTGACTTAG
*
2343567 GCATACGGAGTTCATCCCTCGTCTAA
1 GCATACGGAGTTCATCCCTAGTCTAA
2343593 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCA-TCCCTAGTCTAA
2343619 G
1 G
2343620 ATCAGGCCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAGTCTAA
Found at i:2343956 original size:26 final size:26
Alignment explanation
Indices: 2343920--2343972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2343910 GTTGACTTAG
*
2343920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2343946 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2343972 G
1 G
2343973 ATTGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2344492 original size:45 final size:45
Alignment explanation
Indices: 2344419--2344533 Score: 142
Period size: 45 Copynumber: 2.6 Consensus size: 45
2344409 GACCGAGGCT
*
2344419 CAGCATGTGCTGATGGTGGTCGAGGCAACCGTCC-ACACCACGACC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCG-CCTACACCACGACC
* * * * * *
2344464 CAGCATGTGCCGATGGTGTTTGATGCAACCGCCTGCACCAGGGCC
1 CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTACACCACGACC
*
2344509 CAGCTTGTGCCGATGGTGGTCGAGG
1 CAGCATGTGCCGATGGTGGTCGAGG
2344534 TAAGTGCCCG
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 2 0.03
45 56 0.97
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
CAGCATGTGCCGATGGTGGTCGAGGCAACCGCCTACACCACGACC
Found at i:2345994 original size:158 final size:160
Alignment explanation
Indices: 2345653--2346017 Score: 398
Period size: 158 Copynumber: 2.3 Consensus size: 160
2345643 TGACTGAGCA
* * *
2345653 CCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCCGAC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCATGTCTAAGCCCCAAC
* * * * * * **
2345717 CAAACCAAGGGTTGTGGCAGCAGGACCGGCAGCACGCAGAGGGGGATCGGGTTGATCCTTGGCTT
66 CAAACCAAGGGTCGTAGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCTGATCCTCAGCTT
2345782 GCGCATCCTACCTCTCCAACCCGCTGAACG
131 GCGCATCCTACCTCTCCAACCCGCTGAACG
* **
2345812 CCCGCATGCTCGTTTTGTGGGTTGACTTAGGCATACGTAGTTCATTCCCA-GTCTAAGCCCCAAC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCATGTCTAAGCCCCAAC
** * * *
2345876 TGAACCAAGGGACTCGTAGC-G-A-GATCGATAGCACACAGATGGGGACCGGGCTGATCCTCAGC
66 CAAACCAAGGG--TCGTAGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCTGATCCTCAGC
* * ** ** * *
2345938 TTGCGTATTCTGGCTCTCTGATCGGCTGAACG
129 TTGCGCATCCTACCTCTCCAACCCGCTGAACG
* * * *
2345970 CCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGTAGTGCATTCC
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCC
2346018 TGGTCTCAAC
Statistics
Matches: 169, Mismatches: 34, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
158 96 0.57
159 64 0.38
160 4 0.02
161 5 0.03
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.24
Consensus pattern (160 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTTCATTCCCATGTCTAAGCCCCAAC
CAAACCAAGGGTCGTAGCAGCAGGACCGACAGCACACAGAGGGGGACCGGGCTGATCCTCAGCTT
GCGCATCCTACCTCTCCAACCCGCTGAACG
Found at i:2346320 original size:45 final size:45
Alignment explanation
Indices: 2346271--2346383 Score: 111
Period size: 45 Copynumber: 2.5 Consensus size: 45
2346261 ATCTTATGCT
* ** *
2346271 GATGGTGGTCGAGGCAATTGCCTGCACCAAGGGCC-GGCATGTGCC
1 GATGGTGGTCGAGGCAACTGCCCACACCAA-GGCCTAGCATGTGCC
* * * *
2346316 GATGGTGATCAAGGCAACCGCCCACACCAAGGCCTAGCTTGTGCC
1 GATGGTGGTCGAGGCAACTGCCCACACCAAGGCCTAGCATGTGCC
* * *
2346361 GATGGCGGCCGAGGCAAGTGCCC
1 GATGGTGGTCGAGGCAACTGCCC
2346384 GTACCAAAGG
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
44 4 0.08
45 49 0.92
ACGTcount: A:0.20, C:0.30, G:0.35, T:0.15
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACTGCCCACACCAAGGCCTAGCATGTGCC
Found at i:2349571 original size:45 final size:45
Alignment explanation
Indices: 2349502--2349657 Score: 150
Period size: 45 Copynumber: 3.5 Consensus size: 45
2349492 AGGGCTCGGT
* * * * *
2349502 ATGTGCCGATGATGGTCGAGGCAACCGCCCTCACTATGGCCCAGC
1 ATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGCCCAGC
* * * *
2349547 ATGTGCCGATGGTGTTCGATGCAACAGCCCGCACCAGGGGCCATC
1 ATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGCCCAGC
* * * ** * *
2349592 TTGTGCCGATGGTGGTTGAGGCAACTGCCCATACCAGGGCCTAGT
1 ATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGCCCAGC
* *
2349637 TTGTGCCGATGGCGGTCGAGG
1 ATGTGCCGATGGTGGTCGAGG
2349658 TAAGTGCCCG
Statistics
Matches: 89, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (45 bp):
ATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAGGGCCCAGC
Found at i:2358329 original size:26 final size:26
Alignment explanation
Indices: 2358299--2358369 Score: 124
Period size: 26 Copynumber: 2.7 Consensus size: 26
2358289 AGGCGTACGA
*
2358299 AGTTCATCCCCAGTCTAAGCATATGG
1 AGTTCATTCCCAGTCTAAGCATATGG
*
2358325 AGTTCATTCCTAGTCTAAGCATATGG
1 AGTTCATTCCCAGTCTAAGCATATGG
2358351 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
2358370 ATTGGACTGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATATGG
Found at i:2358527 original size:223 final size:222
Alignment explanation
Indices: 2358136--2358540 Score: 474
Period size: 223 Copynumber: 1.8 Consensus size: 222
2358126 CCTAGTGTGC
* * * *
2358136 TCCCAGTCTAAGATTGAGCCAGACCGAGGGTTACGGTAGCAAGACCTGCAGCGGGATCGACAGCA
1 TCCCAGTCTAAGATTGAGCCAGACCGAAGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAGCA
* * * * *
2358201 CACAGAGGGGACCAGGTCGATCTCCGGCTTGCGCATCCTACCTCTCTGGACGGCTGAGCACCCGC
66 CAAAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATCATACCTCTCTGGACGGCTCAGCACCCGC
* * * * *
2358266 ACGGTAGTTTCATGGGATGACTTAGGCGTACGAAGTTCATCCCCAGTCTAAGCATATGGAGTTCA
131 ACGCTAGTTTCATGGGATAACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATATGGAGTTCA
2358331 TTCCTAGTCTAAGCATATGGAGTTCAT
196 TTCCTAGTCTAAGCATATGGAGTTCAT
** * * * **
2358358 TCCCAGTCTAAGATTG-GACTGGATCGAAGGTTACGGCAGCAGGACCAGCAGTAGGATCGGTAGC
1 TCCCAGTCTAAGATTGAG-CCAGACCGAAGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAGC
* * * * * **
2358422 ACATAAGGGGGGACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTCTGG-CTTGCTCAGTGCC
65 ACA-AAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATCATACCTCTCTGGAC-GGCTCAGCACC
* * *
2358486 CGCACGCTCA-TTTCGTGGGTTAACTTAGGCATACAAAGTTCATTCCCAATCTAAG
128 CGCACGCT-AGTTTCATGGGATAACTTAGGCATACAAAGTTCATCCCCAATCTAAG
2358541 ATCGGACAGG
Statistics
Matches: 148, Mismatches: 31, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
221 1 0.01
222 55 0.37
223 91 0.61
224 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (222 bp):
TCCCAGTCTAAGATTGAGCCAGACCGAAGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAGCA
CAAAGAGGGGACCAGGCCGATCCCCGGCTTGCGCATCATACCTCTCTGGACGGCTCAGCACCCGC
ACGCTAGTTTCATGGGATAACTTAGGCATACAAAGTTCATCCCCAATCTAAGCATATGGAGTTCA
TTCCTAGTCTAAGCATATGGAGTTCAT
Found at i:2366146 original size:26 final size:26
Alignment explanation
Indices: 2366116--2366168 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2366106 GTTGACTTAG
*
2366116 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * *
2366142 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
2366168 G
1 G
2366169 ATCGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:2367995 original size:26 final size:26
Alignment explanation
Indices: 2367959--2368008 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2367949 TGACTTAGAC
2367959 ATACGGAGTTCATCCCCAGTCTAATG
1 ATACGGAGTTCATCCCCAGTCTAATG
* *
2367985 ATACGGAGTTCATTCTCAGTCTAA
1 ATACGGAGTTCATCCCCAGTCTAA
2368009 GATCGAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAATG
Found at i:2368362 original size:26 final size:26
Alignment explanation
Indices: 2368326--2368378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2368316 GTGGACTTAG
2368326 GCATACAGAGTTCAGTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
* *
2368352 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAGTCCCAGTCTAA
2368378 G
1 G
2368379 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAA
Found at i:2368961 original size:45 final size:45
Alignment explanation
Indices: 2368812--2369025 Score: 162
Period size: 45 Copynumber: 4.8 Consensus size: 45
2368802 TACCGAGGCT
* *
2368812 CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCC
1 CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC
** * * *
2368857 CATTATGTGTCGATGGTGTTCGATGCAACCGCCTGCACC-AGAGGC
1 CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAG-GGC
* * * ** * * *
2368902 CATCTTTTACCGATGGTGGTCGAGGCAATCACCCGTACCAAGGGC
1 CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC
* * * * *
2368947 CGGCATGTGTCGATGGTGATCGGGGCAACCACTCGCACC-AGGGC
1 CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC
* * * * * *
2368991 ACAGCTTGTGCCGATGGCGATTGAGGCAACTGCCC
1 -CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCC
2369026 ATACCAAAGG
Statistics
Matches: 128, Mismatches: 38, Indels: 6
0.74 0.22 0.03
Matches are distributed among these distances:
44 6 0.05
45 120 0.94
46 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
CAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGC
Found at i:2369005 original size:90 final size:90
Alignment explanation
Indices: 2368806--2369007 Score: 210
Period size: 90 Copynumber: 2.2 Consensus size: 90
2368796 AGGGCCTACC
* * * * **
2368806 GAGGCTCAGCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCATTATGTGTCGAT
1 GAGGC-CAGCTTGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGTCGAT
* * *
2368871 GGTGTTCGATGCAACCGCCTGCACCA
65 GGTGATCGAGGCAACCACCTGCACCA
* * * * * * *
2368897 GAGGCCATCTTTTACCGATGGTGGTCGAGGCAATCACCCGTACCAAGGGCCGGCATGTGTCGATG
1 GAGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGTCGATG
*
2368962 GTGATCGGGGCAACCA-CTCGCACCA
66 GTGATCGAGGCAACCACCT-GCACCA
2368987 G-GGCACAGCTTGTGCCGATGG
1 GAGGC-CAGCTTGTGCCGATGG
2369008 CGATTGAGGC
Statistics
Matches: 89, Mismatches: 20, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
89 5 0.06
90 79 0.89
91 5 0.06
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (90 bp):
GAGGCCAGCTTGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGTCGATG
GTGATCGAGGCAACCACCTGCACCA
Found at i:2369996 original size:26 final size:26
Alignment explanation
Indices: 2369960--2370013 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
2369950 TGGGTTGATT
2369960 TAGGCATACGGAGTTCATCCCAAGTC
1 TAGGCATACGGAGTTCATCCCAAGTC
*
2369986 TAGGCATACGGAGTTCATCCCTAGTC
1 TAGGCATACGGAGTTCATCCCAAGTC
2370012 TA
1 TA
2370014 AGATCGGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATCCCAAGTC
Found at i:2370315 original size:147 final size:147
Alignment explanation
Indices: 2370048--2370334 Score: 369
Period size: 147 Copynumber: 2.0 Consensus size: 147
2370038 GACAGTAGGA
* * * * *
2370048 CCAGTAGCAGGATCGGTAGCACGCAGGGAGGGACCGGGCCGATCCCCGACTTGCACATTTTGCCT
1 CCAGTAGCAGGATCGGTAGCACGCAGAGACGGACCAGGCCGATCCCCAACTTGCACATTATGCCT
* * * *
2370113 CTCCGACCGGCTGAGCCCCCGCACACTCATTTCGTGGTTTGGCTTAGGCATACGGAGTTCATTCC
66 CTCCGACCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
*
2370178 ATGTCTAAGCCCCAGCC
131 ACGTCTAAGCCCCAGCC
* * **
2370195 CCAGTAGC-GGTATCGGTAGCATGCAGAGACGGACCAGGCCGATCCTCAACTTGTGCATTATGCC
1 CCAGTAGCAGG-ATCGGTAGCACGCAGAGACGGACCAGGCCGATCCCCAACTTGCACATTATGCC
* * ** **
2370259 TCTCCGACCGGCTCTGCACCTGCATGCTTTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
65 TCTCCGACCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
2370324 CCCGTCTAAGC
130 CACGTCTAAGC
2370335 ATATGGAGTT
Statistics
Matches: 118, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
146 2 0.02
147 116 0.98
ACGTcount: A:0.18, C:0.31, G:0.26, T:0.24
Consensus pattern (147 bp):
CCAGTAGCAGGATCGGTAGCACGCAGAGACGGACCAGGCCGATCCCCAACTTGCACATTATGCCT
CTCCGACCGGCTCAGCACCCGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
ACGTCTAAGCCCCAGCC
Found at i:2370336 original size:26 final size:26
Alignment explanation
Indices: 2370307--2370359 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2370297 GTTGACTTAG
*
2370307 GCATACGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2370333 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2370359 G
1 G
2370360 ATCGGACCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2371504 original size:45 final size:44
Alignment explanation
Indices: 2371402--2371579 Score: 160
Period size: 45 Copynumber: 4.0 Consensus size: 44
2371392 CGGGGCTCGA
*
2371402 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACAGGGCCCAG
* * * * * *
2371446 CATGTGCCGATGGTGTTCGATGCAACCGGCCTCAACAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGC-ACAGGGCCCAG
* * * * * * *
2371491 CTTGTGCCAATGGTGGTTGAGGCAATCACCCACACCAAGGG-CCGG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-C-AGGGCCCAG
* * *
2371536 CATGTGCCGATGGTGATTGAGGCAACCGCCTGCACCAGGGCCCA
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCA-CAGGGCCCA
2371580 ACTTATGTCG
Statistics
Matches: 104, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
44 34 0.33
45 66 0.63
46 4 0.04
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACAGGGCCCAG
Found at i:2372578 original size:26 final size:26
Alignment explanation
Indices: 2372548--2372600 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2372538 GTTGACTTAG
2372548 GCATATGAAGTTCATCCCCAATCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
* * *
2372574 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATCCCCAATCTAA
2372600 G
1 G
2372601 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATATGAAGTTCATCCCCAATCTAA
Done.