Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 21 of 120
Found at i:2373977 original size:26 final size:26
Alignment explanation
Indices: 2373941--2373992 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2373931 GTTGACTTAG
*
2373941 GCATACGGAGTTCATTTACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
2373967 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
2373993 CATCAGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:2374327 original size:26 final size:26
Alignment explanation
Indices: 2374297--2374349 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2374287 GTTGACTTAG
*
2374297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2374323 GCATACAGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2374349 G
1 G
2374350 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2375065 original size:26 final size:26
Alignment explanation
Indices: 2375036--2375088 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2375026 GTTGACTTAG
* *
2375036 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGAAGTACATTCCCAGTCTAA
*
2375062 GCATATGGAGTACATTCCCAGTCTAA
1 GCATATGAAGTACATTCCCAGTCTAA
2375088 G
1 G
2375089 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTACATTCCCAGTCTAA
Found at i:2375689 original size:90 final size:90
Alignment explanation
Indices: 2375531--2375700 Score: 218
Period size: 90 Copynumber: 1.9 Consensus size: 90
2375521 GGGCTTGACA
* * * *
2375531 TGTGTCGATGGTGGTCGAGGCAACCACCTGCACCACGGCCCGGCATGTGTCGATGGTGTTCGATG
1 TGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCGGCATGTGTCAATGGTGTTCGAGG
* *
2375596 CAACTGCCCGTACTAAAGGCCATCT
66 CAACCGCCCATACTAAAGGCCATCT
* * * *
2375621 TGTGTCGATGGTGGTTGAGGCAATCGCCCGCACCAAGGGCCGGCATGTG-CTAATGGTGATT-GA
1 TGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCGGCATGTGTC-AATGGTG-TTCGA
2375684 GGCAACCGCCCATACTA
64 GGCAACCGCCCATACTA
2375701 GGGCCTAGCT
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
89 1 0.01
90 65 0.96
91 2 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (90 bp):
TGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCGGCATGTGTCAATGGTGTTCGAGG
CAACCGCCCATACTAAAGGCCATCT
Found at i:2377515 original size:12 final size:12
Alignment explanation
Indices: 2377482--2377516 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2377472 TGTAGGCAAC
* *
2377482 CTTGCCTACCCT
1 CTTGACTACTCT
2377494 CTTGACTACTCT
1 CTTGACTACTCT
2377506 CTTGACTACTC
1 CTTGACTACTC
2377517 GGAAAGGTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.14, C:0.40, G:0.09, T:0.37
Consensus pattern (12 bp):
CTTGACTACTCT
Found at i:2382590 original size:26 final size:26
Alignment explanation
Indices: 2382553--2382605 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2382543 CTTGACTTGG
*
2382553 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
*
2382579 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATCCCCAGTCTAA
2382605 G
1 G
2382606 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGCAGTTCATCCCCAGTCTAA
Found at i:2383559 original size:90 final size:90
Alignment explanation
Indices: 2383401--2383603 Score: 237
Period size: 90 Copynumber: 2.3 Consensus size: 90
2383391 GGGCTCGACA
* * * * *
2383401 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATAGTGTTTGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTCCCGATAGTGATCGAGG
* * *
2383466 CAACCGCCCGCAATAGAGG-CCATCT
66 CAACAGCCCGCAACAG-GGCCCAACT
* * * * *
2383491 TGTGCCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCCGGCATGTCCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTCCCGATAGTGATCGAGG
*
2383556 CAACAGCCCGCACCAGGGCCCAACT
66 CAACAGCCCGCAACAGGGCCCAACT
* * *
2383581 TGTGTCGATGGCGATCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2383604 GTGCTCGTAC
Statistics
Matches: 95, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 2 0.02
90 93 0.98
ACGTcount: A:0.20, C:0.31, G:0.33, T:0.17
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTCCCGATAGTGATCGAGG
CAACAGCCCGCAACAGGGCCCAACT
Found at i:2383569 original size:45 final size:45
Alignment explanation
Indices: 2383399--2383603 Score: 191
Period size: 45 Copynumber: 4.6 Consensus size: 45
2383389 CGGGGCTCGA
* *
2383399 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
* * * * *
2383444 CATGTGCCGATAGTGTTTGATGCAACCGCCCGCA--ATAGAGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-AG-GGCCAG
* * * *
2383489 CTTGTGCCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCCGG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
* * * *
2383534 CATGTCCCGATGGTGATCGAGGCAACAGCCCGCACC-AGGGCCCAA
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGG-CCAG
* * * *
2383579 CTTGTGTCGATGGCGATCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2383604 GTGCTCGTAC
Statistics
Matches: 127, Mismatches: 28, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
43 1 0.01
44 5 0.04
45 118 0.93
46 2 0.02
47 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.32, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGGCCAG
Found at i:2384583 original size:26 final size:26
Alignment explanation
Indices: 2384554--2384624 Score: 133
Period size: 26 Copynumber: 2.7 Consensus size: 26
2384544 AGGCATACAA
*
2384554 AGTTCATTCCCAGTCTAAGCATACGG
1 AGTTCATTCCTAGTCTAAGCATACGG
2384580 AGTTCATTCCTAGTCTAAGCATACGG
1 AGTTCATTCCTAGTCTAAGCATACGG
2384606 AGTTCATTCCTAGTCTAAG
1 AGTTCATTCCTAGTCTAAG
2384625 ATCGAACCGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (26 bp):
AGTTCATTCCTAGTCTAAGCATACGG
Found at i:2385158 original size:45 final size:45
Alignment explanation
Indices: 2385079--2385191 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
2385069 GGGCTCGACA
* * * *
2385079 TGTGCCGATGCTGGTCGAGGTAACCGCCCACACCAAGGG-CCATCT
1 TGTGCTGATGGTGGTCGAGGCAACCGCCCACACC-AGGGCCCAACT
* * *
2385124 TGTGTTGATGGTGGTCAAGGCAACCGCCCGCACCAGGGCCCAACT
1 TGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAACT
*
2385169 TGTGCTGATGGTAGTCGAGGCAA
1 TGTGCTGATGGTGGTCGAGGCAA
2385192 GTGCCTGTAC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 4 0.07
45 53 0.93
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.19
Consensus pattern (45 bp):
TGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAACT
Found at i:2388071 original size:26 final size:26
Alignment explanation
Indices: 2388042--2388092 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2388032 TTGTCTTAGG
*
2388042 CATACATAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
* *
2388068 CATACGGAGTTTATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
2388093 GATCGGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.31
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:2389256 original size:26 final size:26
Alignment explanation
Indices: 2389227--2389279 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2389217 GTTGACTTAG
2389227 GCATAC-GGAGTTCATCCCCAGTCTAA
1 GCATACGGGA-TTCATCCCCAGTCTAA
*
2389253 GCATACGGGATTCATTCCCAGTCTAA
1 GCATACGGGATTCATCCCCAGTCTAA
2389279 G
1 G
2389280 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGGATTCATCCCCAGTCTAA
Found at i:2389999 original size:45 final size:45
Alignment explanation
Indices: 2389898--2390012 Score: 140
Period size: 45 Copynumber: 2.6 Consensus size: 45
2389888 CAGACCTTGC
*
2389898 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
* * * * * * *
2389943 CATGTGCCGATGTTGTTCGATGCAACCGCCTGCTCCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
* *
2389988 CTTGTGTCGATGGTGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2390013 TCATCGGCAT
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAG
Found at i:2391059 original size:26 final size:26
Alignment explanation
Indices: 2391029--2391081 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2391019 GTTGACTTAG
2391029 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2391055 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2391081 G
1 G
2391082 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2391940 original size:45 final size:45
Alignment explanation
Indices: 2391891--2392041 Score: 149
Period size: 45 Copynumber: 3.4 Consensus size: 45
2391881 ACATGTGCCG
* ** * *
2391891 ATGGTGGTCGAGGCAACTACCCACACCTCGGCCCAGCATGTGTTA
1 ATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGTCA
* * * ** * **
2391936 ATGGTGTTCGATGCAACCGCCCGTACCAGGGGCCATTTTGTGTCA
1 ATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGTCA
* *
2391981 ATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCG
1 ATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGTCA
**
2392026 ATGGCAGTCGAGGCAA
1 ATGGTGGTCGAGGCAA
2392042 GTGCCCGTAC
Statistics
Matches: 81, Mismatches: 25, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 81 1.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
ATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGTCA
Found at i:2392079 original size:90 final size:90
Alignment explanation
Indices: 2391882--2392081 Score: 206
Period size: 90 Copynumber: 2.2 Consensus size: 90
2391872 CAGGGCTCGA
* * ** *
2391882 CATGTGCCGATGGTGGTCGAGGCAACTACCCACACCTCGGCCCAGCATGTGTTAATGGTGTTCGA
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCACACCACGGCCCAGCATGTGCCAATGGAGTTCGA
* * *
2391947 TGCAACCGCCCGTACCAGGGGCCAT
66 GGCAACCGCCCGTACCAAGGGCCAG
** * * * * *
2391972 TTTGTGTCAATGGTGGTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCAG-TCG
1 CATGTGCCGATGGTGGTCGAGGCAACCACCCACACCACGGCCCAGCATGTGCCAATGG-AGTTCG
**
2392036 AGGCAAGTGCCCGTACCAAAGGG-CAG
65 AGGCAACCGCCCGTACC-AAGGGCCAG
*
2392062 CATGTGCCGATGATGGTCGA
1 CATGTGCCGATGGTGGTCGA
2392082 TGCGTGTACC
Statistics
Matches: 86, Mismatches: 22, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
90 81 0.94
91 5 0.06
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (90 bp):
CATGTGCCGATGGTGGTCGAGGCAACCACCCACACCACGGCCCAGCATGTGCCAATGGAGTTCGA
GGCAACCGCCCGTACCAAGGGCCAG
Found at i:2393015 original size:25 final size:26
Alignment explanation
Indices: 2392981--2393030 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2392971 TGACTTAGGC
*
2392981 ATACGGAGTTCA-TCCCAGTCTAAGT
1 ATACGGAGTTAATTCCCAGTCTAAGT
2393006 ATACGGAGTTAATTCCCAGTCTAAG
1 ATACGGAGTTAATTCCCAGTCTAAG
2393031 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTAATTCCCAGTCTAAGT
Found at i:2394598 original size:159 final size:159
Alignment explanation
Indices: 2394290--2394635 Score: 385
Period size: 159 Copynumber: 2.2 Consensus size: 159
2394280 TCCAGTCTAC
* * ** * * * *
2394290 GCATACGGAGTTCATTCCCAGTCCAAGATCAAACCAGATCAAGGGTTGTGGCAGCAGGATCGACA
1 GCATACAGAGTTCATTCCCAGTCTAAGCCCCAGCCTGATCAAGGGTTGTGGCAGCAGGACCGACA
* * * * * * * * * *
2394355 GCACACAGGTGGGGACCGGGTCGATCCCTGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGCGT
66 GCACACAGGTCGGGACCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCGACCAGCTCAGCGT
*
2394420 CCGCACGCTCGTTTCGTGGGTT-AGCTTAG
131 CCGCACGCTCATTTCGTGGGTTGA-CTTAG
* * *
2394449 GCATACAGAGTTCATT-CCATGTCTAAGCCCCAGCCTGATCGAGGGTTGTGGCAGCGGGACCGGC
1 GCATACAGAGTTCATTCCCA-GTCTAAGCCCCAGCCTGATCAAGGGTTGTGGCAGCAGGACCGAC
** *
2394513 AGCATGCAGAG-CGGGACCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCTACCAGCTCAGC
65 AGCACACAG-GTCGGGACCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCGACCAGCTCAGC
* *
2394577 G-CCAGCACGTTCATTTTGTGGGTTGACTTAG
129 GTCC-GCACGCTCATTTCGTGGGTTGACTTAG
2394608 GCATACAGAGTTCATTCCCAGTCTAAGC
1 GCATACAGAGTTCATTCCCAGTCTAAGC
2394636 ATACGGAGTT
Statistics
Matches: 155, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
158 5 0.03
159 145 0.94
160 5 0.03
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (159 bp):
GCATACAGAGTTCATTCCCAGTCTAAGCCCCAGCCTGATCAAGGGTTGTGGCAGCAGGACCGACA
GCACACAGGTCGGGACCGAGCCGATCCCCGGCTTACACATTATGCCTCTCCGACCAGCTCAGCGT
CCGCACGCTCATTTCGTGGGTTGACTTAG
Found at i:2394644 original size:26 final size:26
Alignment explanation
Indices: 2394608--2394660 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2394598 GTTGACTTAG
2394608 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2394634 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2394660 G
1 G
2394661 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2395209 original size:45 final size:45
Alignment explanation
Indices: 2395144--2395280 Score: 130
Period size: 45 Copynumber: 3.0 Consensus size: 45
2395134 CGCACCTAAG
* * * *
2395144 GCCAAACAGTGTGCCGATGGTGTTCGATGCAACCGCCCACACCAGGG
1 GCCAAA-A-TGTGTCGATGGTGATCGAGGCAACCGCCCACACCAGGA
*** * * * * *
2395191 GCCATCTTGTGTCGATGGTGGTCGAGGTAATCACCCACACCAAGA
1 GCCAAAATGTGTCGATGGTGATCGAGGCAACCGCCCACACCAGGA
* *
2395236 GCCAAAATGTGTCGATGGTGATCGAGGCAACTGCCCGCACCAGGA
1 GCCAAAATGTGTCGATGGTGATCGAGGCAACCGCCCACACCAGGA
2395281 TCTAGCTTGT
Statistics
Matches: 69, Mismatches: 21, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
45 65 0.94
47 4 0.06
ACGTcount: A:0.25, C:0.28, G:0.29, T:0.18
Consensus pattern (45 bp):
GCCAAAATGTGTCGATGGTGATCGAGGCAACCGCCCACACCAGGA
Found at i:2395277 original size:90 final size:91
Alignment explanation
Indices: 2395105--2395279 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 91
2395095 CCGGGCTCGC
* * *
2395105 CTTGTGCGATGTGTGGTCGAGGCAACCAACGCACCTAAGGCCAAACAGTGTGCCGATGGTGTTCG
1 CTTGTGCGATGTGTGGTCGAGGCAACCAACCCACCCAAGGCCAAACAGTGTGCCGATGGTGATCG
*
2395170 ATGCAACCGCCCACACCAGGGGCCAT
66 AGGCAACCGCCCACACCAGGGGCCAT
* * *
2395196 CTTGTGTCGATG-GTGGTCGAGGTAATC-ACCCACACCAAGAGCCAAA-A-TGTGTCGATGGTGA
1 CTTGTG-CGATGTGTGGTCGAGGCAACCAACCCAC-CCAAG-GCCAAACAGTGTGCCGATGGTGA
* *
2395257 TCGAGGCAACTGCCCGCACCAGG
63 TCGAGGCAACCGCCCACACCAGG
2395280 ATCTAGCTTG
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
90 37 0.51
91 24 0.33
92 11 0.15
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.18
Consensus pattern (91 bp):
CTTGTGCGATGTGTGGTCGAGGCAACCAACCCACCCAAGGCCAAACAGTGTGCCGATGGTGATCG
AGGCAACCGCCCACACCAGGGGCCAT
Found at i:2395290 original size:90 final size:90
Alignment explanation
Indices: 2395105--2395310 Score: 211
Period size: 90 Copynumber: 2.3 Consensus size: 90
2395095 CCGGGCTCGC
* * *
2395105 CTTGTGCGATGTGTGGTCGAGGCAACCAACGCACCTAAGGCCAAACAGTGTGCCGATGGTGTTCG
1 CTTGTGCGATG-GTGGTCGAGGCAACCAACCCACCCAAGGCCAAACAGTGTGCCGATGGTGATCG
* * *
2395170 ATGCAACCGCCCACACCAGGGGCCAT
65 AGGCAACCGCCCACACCAGGAGCCAG
* * *
2395196 CTTGTGTCGATGGTGGTCGAGGTAATC-ACCCACACCAAGAGCCAAA-A-TGTGTCGATGGTGAT
1 CTTGTG-CGATGGTGGTCGAGGCAACCAACCCAC-CCAAG-GCCAAACAGTGTGCCGATGGTGAT
* * * *
2395258 CGAGGCAACTGCCCGCACCAGGATCTAG
63 CGAGGCAACCGCCCACACCAGGAGCCAG
* *
2395286 CTTGTGCCTATGGTGGTTGAGGCAA
1 CTTGTG-CGATGGTGGTCGAGGCAA
2395311 GTGCTCGTAC
Statistics
Matches: 95, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
90 60 0.63
91 24 0.25
92 11 0.12
ACGTcount: A:0.23, C:0.26, G:0.30, T:0.20
Consensus pattern (90 bp):
CTTGTGCGATGGTGGTCGAGGCAACCAACCCACCCAAGGCCAAACAGTGTGCCGATGGTGATCGA
GGCAACCGCCCACACCAGGAGCCAG
Found at i:2396939 original size:25 final size:26
Alignment explanation
Indices: 2396911--2396962 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
2396901 GTTGACTTAG
2396911 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2396936 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2396962 G
1 G
2396963 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2397524 original size:45 final size:45
Alignment explanation
Indices: 2397402--2397528 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
2397392 TGGGGCTCGA
* *
2397402 CATGTGCCGATGGTGGTTGAGGCAACCGCCCGCACCAGGGCCCAG
1 CATGTGCCGATGGTGGTTAAGGCAACCGCCCGTACCAGGGCCCAG
* * * *
2397447 CATGTGCTGATGGTGTTTAATGCAACCACCCGTACCAGGGCCCAG
1 CATGTGCCGATGGTGGTTAAGGCAACCGCCCGTACCAGGGCCCAG
* * * **
2397492 CTTGTGCCGATGGCGGTCAAGGCAAGTGCCCGTACCA
1 CATGTGCCGATGGTGGTTAAGGCAACCGCCCGTACCA
2397529 AAGGGCAGCC
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 67 1.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTTAAGGCAACCGCCCGTACCAGGGCCCAG
Found at i:2398509 original size:25 final size:26
Alignment explanation
Indices: 2398460--2398509 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2398450 TAACTTAGGA
2398460 ATACGGAGTTCATCCCCAGTCTAAGC
1 ATACGGAGTTCATCCCCAGTCTAAGC
*
2398486 ATACGGAGTTCAT-TCCAGTCTAAG
1 ATACGGAGTTCATCCCCAGTCTAAG
2398510 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTCTAAGC
Found at i:2398679 original size:196 final size:195
Alignment explanation
Indices: 2398305--2398681 Score: 422
Period size: 196 Copynumber: 1.9 Consensus size: 195
2398295 TAGTGCAGCC
* * * *
2398305 CCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCAAGGCCCACAGCGAGATCGACAACATG
1 CCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAAGGCCAACAGCGAGATCGACAACACG
* * * *
2398370 CAGAGGGGACCGAGTCAATCCCCGGCTTGCGTATCCTACCTCTCTGGTCGGTTGAGCGCCCGCAC
66 CAGAGGGGACCGAGTCAATCCCCGGCTTGCGCATCCTACCTCTCCGATCAGTTGAGCGCCCGCAC
* * * *
2398435 GCTCGTTTCGTGCGTTAACTTAGGAATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATT
131 GCTCATTTCATGCGTTAACTTAGGAATACGAAGTTCATCCCAAGTCTAAGCATACGGAGTTCATT
* * * *
2398500 CCAGTCTAAGATCGGATC-GAACCGAGGGTTGCGATAG-TAGGACCAACAGC-AGGATCGATAGC
1 CCAGTCTAAGATCGGATCAG-ACCGAGGGTTGCGACAGCAAGG-CCAACAGCGA-GATCGACAAC
* * * * * *
2398562 ACGCAGAGGGGGACCG-GGCTGATCCTCGGCTTGCGCATTCTACCTTTCCGATCAGTTGAGTGCC
63 ACGCAGA-GGGGACCGAGTC-AATCCCCGGCTTGCGCATCCTACCTCTCCGATCAGTTGAGCGCC
* * ** *
2398626 CGTACGCTCATTTCATGGGTTGGCTTA-GACATACGAAGTTCATTCCAAGTCTAAGC
126 CGCACGCTCATTTCATGCGTTAACTTAGGA-ATACGAAGTTCATCCCAAGTCTAAGC
2398682 CCTAGCCAGA
Statistics
Matches: 149, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
194 5 0.03
195 57 0.38
196 87 0.58
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (195 bp):
CCAGTCTAAGATCGGATCAGACCGAGGGTTGCGACAGCAAGGCCAACAGCGAGATCGACAACACG
CAGAGGGGACCGAGTCAATCCCCGGCTTGCGCATCCTACCTCTCCGATCAGTTGAGCGCCCGCAC
GCTCATTTCATGCGTTAACTTAGGAATACGAAGTTCATCCCAAGTCTAAGCATACGGAGTTCATT
Found at i:2398843 original size:26 final size:26
Alignment explanation
Indices: 2398813--2398865 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2398803 GTTGACTTTG
* *
2398813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
2398839 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
2398865 G
1 G
2398866 ATCGAAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:2399596 original size:171 final size:169
Alignment explanation
Indices: 2399263--2399612 Score: 436
Period size: 171 Copynumber: 2.1 Consensus size: 169
2399253 AGTGCGCTCT
* * *
2399263 CAGTCTAAGATCAGACCGAACTGAGGGTTACGGTAGCAAGACCCGCAGCAGGATCGACAGCACAT
1 CAGTCTAAGATCAGACCGAACTGAGGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAACACAT
* * * * * * * *
2399328 AGAGGGGATCGGGTCGATCCTCGGCTTGTGCCTCCTGCCTCTCTGGCCGGCTGAGCGCCCGTACA
66 AGAAGGGACCAGGTCGATCCCCGGCTTGTGCATCCTGCCTCTCCGGCCAGCTGAGCACCCGTACA
*
2399393 CTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCC
131 CTCGTTTCGTGGGTTGAGTTAGGCAGACGGAGTTCATT-C
* * * *
2399433 CAGTCTAAGATCAGACCGGA-TCGAGGGTTACGGCAGTAGGACCAGCAGCAGGATCGTCAACAC-
1 CAGTCTAAGATCAGACCGAACT-GAGGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAACACA
* *
2399496 TCAGGAAGGGACCAGGTCGATCCCCGGCTTGTGCATTCTGCCTCTCCGGCCAGCTTAGCACCCGT
65 T-A-GAAGGGACCAGGTCGATCCCCGGCTTGTGCATCCTGCCTCTCCGGCCAGCTGAGCACCCGT
* * *
2399561 ACGCTTGTTTCGTGGGTTG-GCTTAGGTAGACGGAGTTCATTC
128 ACACTCGTTTCGTGGGTTGAG-TTAGGCAGACGGAGTTCATTC
2399603 CATGTCTAAG
1 CA-GTCTAAG
2399613 CTCGAGCCGG
Statistics
Matches: 154, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
169 2 0.01
170 59 0.38
171 93 0.60
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.22
Consensus pattern (169 bp):
CAGTCTAAGATCAGACCGAACTGAGGGTTACGGCAGCAAGACCAGCAGCAGGATCGACAACACAT
AGAAGGGACCAGGTCGATCCCCGGCTTGTGCATCCTGCCTCTCCGGCCAGCTGAGCACCCGTACA
CTCGTTTCGTGGGTTGAGTTAGGCAGACGGAGTTCATTC
Found at i:2399777 original size:26 final size:26
Alignment explanation
Indices: 2399747--2399797 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2399737 TGACTTAGGT
*
2399747 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
2399773 ATACGGAGTTGATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2399798 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2401362 original size:26 final size:26
Alignment explanation
Indices: 2401326--2401403 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
2401316 TTGACTTAGA
* * *
2401326 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGAAGTTCATTCCTAGTCTAAG
2401352 CATACGAAGTTCATTCCTAGTCTAAG
1 CATACGAAGTTCATTCCTAGTCTAAG
2401378 CATACGAAGTTCATTCCTAGTCTAAG
1 CATACGAAGTTCATTCCTAGTCTAAG
2401404 ATCAGATCGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
CATACGAAGTTCATTCCTAGTCTAAG
Found at i:2403156 original size:26 final size:26
Alignment explanation
Indices: 2403120--2403171 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2403110 TAGACTTAGA
*
2403120 CATACGGAGTTCATCCCCAATCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
* *
2403146 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATCCCCAATCTAAG
2403172 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAATCTAAG
Found at i:2404248 original size:45 final size:45
Alignment explanation
Indices: 2404101--2404305 Score: 168
Period size: 45 Copynumber: 4.6 Consensus size: 45
2404091 CAGAGCTCGA
* *
2404101 CATGTGCCCATGGTGGTCGAGGCAA-ATGCCCGCACCACA-GCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACA-GCCCACACCA-AGGCCCAG
* * * * * * * *
2404146 CATGTGCCCATGGTGTTCGATGTAACCA-CCCATACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAA-CAGCCCACACCAAGGCCCAG
* * ** **
2404191 CTTGTGTCGATGGTGGTCGAGGCAATC-GCCTGCACCAAAGG-CTGG
1 CATGTGCCGATGGTGGTCGAGGCAA-CAGCCCACACC-AAGGCCCAG
*
2404236 CATGTGCCGATGGTGGTTGAGGCAACAGCCCACACCAAGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACAGCCCACACCAAGGCCCAG
*
2404281 CTTGTGCCGATGGTGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2404306 GTGCCAGTAC
Statistics
Matches: 122, Mismatches: 31, Indels: 14
0.73 0.19 0.08
Matches are distributed among these distances:
44 5 0.04
45 113 0.93
46 3 0.02
47 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACAGCCCACACCAAGGCCCAG
Found at i:2404285 original size:90 final size:89
Alignment explanation
Indices: 2404103--2404310 Score: 231
Period size: 90 Copynumber: 2.3 Consensus size: 89
2404093 GAGCTCGACA
* * *
2404103 TGTGCCCATGGTGGTCGAGGCAAATGCCCGCACCACAGCCCAGCATGTGCCCATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGC-AATGCCCGCACCAAAGCCCAGCATGTGCCCATGGTGTTCGAGG
* * * * *
2404168 TAACCACCCATACCAGGGGCCATCT
65 CAACCACCCACACCAAGGCCCAGCT
* * * ** *
2404193 TGTGTCGATGGTGGTCGAGGCAATCGCCTGCACCAAAGGCTGGCATGTGCCGATGGTGGTT-GAG
1 TGTGCCGATGGTGGTCGAGGCAAT-GCCCGCACCAAAGCCCAGCATGTGCCCATGGT-GTTCGAG
2404257 GCAA-CAGCCCACACCAAGGCCCAGCT
64 GCAACCA-CCCACACCAAGGCCCAGCT
2404283 TGTGCCGATGGTGGTCGAGGCAAGTGCC
1 TGTGCCGATGGTGGTCGAGGCAA-TGCC
2404311 AGTACCAATG
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
89 5 0.05
90 90 0.91
91 4 0.04
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (89 bp):
TGTGCCGATGGTGGTCGAGGCAATGCCCGCACCAAAGCCCAGCATGTGCCCATGGTGTTCGAGGC
AACCACCCACACCAAGGCCCAGCT
Found at i:2404337 original size:45 final size:44
Alignment explanation
Indices: 2404101--2404362 Score: 134
Period size: 45 Copynumber: 5.8 Consensus size: 44
2404091 CAGAGCTCGA
* * * **
2404101 CATGTGCCCATGGTGGTCGAGGCAAATGCCCGCACCACAGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAAGTGCCAGCACCA-AGGGCAG
* * * * *** * * *
2404146 CATGTGCCCATGGTGTTCGATGTAACCACCCA-TACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAA-GTGCCAGCACCAAGGG-CAG
* * * * *
2404191 CTTGTGTCGATGGTGGTCGAGGCAA-TCGCCTGCACCAAAGGCTGG
1 CATGTGCCGATGGTGGTCGAGGCAAGT-GCCAGCACCAAGGGC-AG
* ** *
2404236 CATGTGCCGATGGTGGTTGAGGCAACAGCCCA-CACCAAGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAAGTG-CCAGCACCAAGG-GCAG
* *
2404281 CTTGTGCCGATGGTGGTCGAGGCAAGTGCCAGTACCAATGGGCAG
1 CATGTGCCGATGGTGGTCGAGGCAAGTGCCAGCACCAA-GGGCAG
* * * * * * *
2404326 CCTGTGTCGATGATGATCGATGCATGTGCCATCACCA
1 CATGTGCCGATGGTGGTCGAGGCAAGTGCCAGCACCA
2404363 TGCACCATCA
Statistics
Matches: 159, Mismatches: 48, Indels: 20
0.70 0.21 0.09
Matches are distributed among these distances:
44 7 0.04
45 145 0.91
46 7 0.04
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAAGTGCCAGCACCAAGGGCAG
Found at i:2405622 original size:26 final size:26
Alignment explanation
Indices: 2405592--2405644 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2405582 GTTAACTTAG
* *
2405592 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
2405618 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
2405644 G
1 G
2405645 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:2406174 original size:45 final size:45
Alignment explanation
Indices: 2406097--2406329 Score: 216
Period size: 45 Copynumber: 5.2 Consensus size: 45
2406087 TTTACTGATT
* * *
2406097 GTGGTCGAGGCAACCGCCCGCAGCACGACCCAGCATGTGCCGATG
1 GTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATG
* *
2406142 GTGGTCGAGGCAACCGCCTGCACCATGGCCCAGCATGTGCCGATG
1 GTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATG
* * * * * * *
2406187 GTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGCTGATG
1 GTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATG
* * * * * *
2406232 GTGGTCAAGGCAATCGCCCGCACTAAGGCCCAGCTTATGTCGATG
1 GTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATG
* * ** * * *
2406277 GCGATCGAGGCAAGTGCCCGTACCAAAGG-GCAGCTTGTGCCGATG
1 GTGGTCGAGGCAACCGCCCGCACC-AAGGCCCAGCATGTGCCGATG
*
2406322 ATGGTCGA
1 GTGGTCGA
2406330 TGCATGTGCC
Statistics
Matches: 151, Mismatches: 36, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
45 147 0.97
46 4 0.03
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.17
Consensus pattern (45 bp):
GTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATG
Found at i:2407281 original size:26 final size:26
Alignment explanation
Indices: 2407231--2407283 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2407221 GTTGACTTAG
**
2407231 GCATACGGAGTTCACCCCCGGTCTAA
1 GCATACGGAGTTCACCCCCAATCTAA
**
2407257 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCACCCCCAATCTAA
2407283 G
1 G
2407284 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCACCCCCAATCTAA
Found at i:2408924 original size:45 final size:45
Alignment explanation
Indices: 2408869--2408978 Score: 157
Period size: 45 Copynumber: 2.4 Consensus size: 45
2408859 AGGCTCGGCA
* ** **
2408869 TGTGTCGATGGTGGTCGAGGCAATCGCCCACACCAGGGGTCATCT
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAGGGCCCAGAT
* *
2408914 TGTGCCGATGGTGGTCGAGGCAATTGCCCACACTAGGGCCCAGAT
1 TGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAGGGCCCAGAT
2408959 TGTGCCGATGGTGGTCGAGG
1 TGTGCCGATGGTGGTCGAGG
2408979 TAAGTGCTCG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.17, C:0.25, G:0.36, T:0.22
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAATCGCCCACACCAGGGCCCAGAT
Found at i:2409042 original size:13 final size:13
Alignment explanation
Indices: 2409024--2409048 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2409014 ATGGTCGAGG
2409024 CATGTGCCATCAC
1 CATGTGCCATCAC
2409037 CATGTGCCATCA
1 CATGTGCCATCA
2409049 TATGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2410123 original size:45 final size:45
Alignment explanation
Indices: 2410053--2410224 Score: 148
Period size: 45 Copynumber: 3.8 Consensus size: 45
2410043 CGGGGCTCGA
*
2410053 CATGTGCCGGTGGTGGTCGAGGCAACCGCCCGTACCACGACCCAGT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCCA-T
* * * * * * **
2410099 -ATGTGCTGATGGTGTTCGATGCAACCACCCATACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCCAT
* * * **
2410143 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCCG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCCAT
* * * * **
2410188 CTTGTGTCGATGGCGGTCGAGGGAAGTGCCCGTACCA
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCA
2410225 AAGGGTAGCT
Statistics
Matches: 102, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
44 1 0.01
45 101 0.99
ACGTcount: A:0.17, C:0.31, G:0.33, T:0.19
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCCAT
Found at i:2410224 original size:90 final size:90
Alignment explanation
Indices: 2410055--2410250 Score: 200
Period size: 90 Copynumber: 2.2 Consensus size: 90
2410045 GGGCTCGACA
* * * *
2410055 TGTGCCGGTGGTGGTCGAGGCAACCGCCCGTACCACGACCCAGTATGTGCTGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCCAGTATGTGCTGATGGCGGTCGAGG
* *
2410120 CAACCACCCATACC-AGGGGCCATCT
66 CAACCACCCATACCAAAGGG-CAGCT
* * *
2410145 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCAGGGCCCCGCT-TGTG-TCGATGGCGGTCGA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCCAG-TATGTGCT-GATGGCGGTCGA
* *** * *
2410208 GGGAAGTGCCCGTACCAAAGGGTAGCT
64 GGCAACCACCCATACCAAAGGGCAGCT
*
2410235 TGTGCCGATGATGGTC
1 TGTGCCGATGGTGGTC
2410251 AATGCATTTG
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
89 1 0.01
90 81 0.93
91 5 0.06
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.20
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCCAGTATGTGCTGATGGCGGTCGAGG
CAACCACCCATACCAAAGGGCAGCT
Found at i:2411193 original size:26 final size:26
Alignment explanation
Indices: 2411156--2411208 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2411146 GTTGACTTAG
2411156 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2411182 GCATAC-AGAGTTCATTCCCAGTGTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
2411208 G
1 G
2411209 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2411899 original size:726 final size:728
Alignment explanation
Indices: 2410504--2411944 Score: 2173
Period size: 726 Copynumber: 2.0 Consensus size: 728
2410494 CCTTATATTG
2410504 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
1 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
*
2410569 GTTTGCTCCTAGTAGCCATTAAAGTGTCTGAAATGGGGATATTTTTTTCAAACGGTCACAAAATC
66 GTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGA-ATTTTTTTCAAACGGTCACAAAATC
*
2410634 TTCTCCACTTCGAGTTTTTAGCTGAATTTGTTTGTGCGTGCCAACAAAAGTACAAGGATCACGTC
130 TTCTCCACTTCGAGTTTTTAGCTGAATTTGTTTGTGCGTGCCAACAAAAATACAAGGATCACGTC
* *
2410699 TACCAAATTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTCGAACAGCAAAAAGTTT
195 TACCAAATTTAGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTT
* * * *
2410764 CGACAATCGTGAAAAAAAGAAAACAAGTCATCTTGCCACGAAACTTCACATGAAAGATTAGGGGA
260 CAAAAATCGGGAAAAAAAGAAAACAAGTCATCCTGCCACGAAACTTCACATGAAAGATTAGGGGA
* *
2410829 CCACTGCATGAATTTACAAGCCATAAAAATGGCATTGTCACGACAGAAATATGAAGATGTGCCTG
325 CCACTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACCACAGAAATATGAAGATGTGCCTG
* * ** *
2410894 AACCCACCTACCACTCGATCGATCCACGGCTTATGCGTCCCACCTCTTCGGTCAACTATGTGCCC
390 AACCCACCTACCACTCGATCGATCCACGGCTTACGCATCCCACCTCGCCGGTCAACTAAGTGCCC
* * * *
2410959 ACACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAAATCGGATCGGA
455 ACACACTCGTTTCATGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAAATCAGACCAGA
* * ** * *
2411024 CCACGGGTTGCGGTAGCAGGACCCGTAATGGGATCAGCAGCACGTAGAGGGGACCAGGTCGATCC
520 CCACGAGTTACGACAGCAGGACCCGCAACGGGATCAGCAGCACGTAGAGGGGACCAGGTCGATCC
* * * ** * * * * *
2411089 TCGGCTTGCGCATCCTGCCTCTCTGGCCGGTTGAGTGCCCGTATGCTCGTTTCGTGGGTTGACTT
585 CCGACTTACGCATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
*
2411154 AGGCATACGAAGTTCATCCCCAGTCTAAGCATAC-AGAGTTCATTCCCAGTGTAAGATCAGACTG
650 AGGCATACGAAGTTCATCCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACTG
2411218 GTGGTCGAAGTGGTT
714 GTGGTCGAAGTGGTT
2411233 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
1 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
2411298 GTTTGCTCCCAGTAGCCATTAAAGTGTCT-AAGATGGGG-A-TTTTTTCAAACGGTCACAAAATC
66 GTTTGCTCCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGAATTTTTTTCAAACGGTCACAAAATC
*
2411360 TTCTCCACTT-GAAGTTTTTAGCTGAATTTGTTTGTGCGTGCCAATAAAAATACAAGGATCACGT
130 TTCTCCACTTCG-AGTTTTTAGCTGAATTTGTTTGTGCGTGCCAACAAAAATACAAGGATCACGT
*
2411424 CTACCAAATTTAGGGCCAAAACTCCTTCTAAAAAATTTTTAAAAAATCCCGAATC-GCAAAAAGT
194 CTACCAAATTTAGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAA-CAGCAAAAAGT
* ** * * * * *
2411488 TTCAAAAATCGGGAAAAATAGAAAACGGGTCGTCCTGGCACGAAACTTCACATTAAGGCTTAGGG
258 TTCAAAAATCGGGAAAAAAAGAAAACAAGTCATCCTGCCACGAAACTTCACATGAAAGATTAGGG
* * * *
2411553 GACCATTGTATGATTTTACAAGCCATAAAAATTGCATTGGCACCACAGAAATATGAAGATGTGCC
323 GACCACTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACCACAGAAATATGAAGATGTGCC
* * * **
2411618 TGAACCCACCTACCACAT-GATCGATCCATGGCTTGCGCATCCCGCCTCGCCGG-CTGGCTAAGT
388 TGAACCCACCTACCAC-TCGATCGATCCACGGCTTACGCATCCCACCTCGCCGGTC-AACTAAGT
* * *
2411681 GCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAGATCAGAC
451 GCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAAATCAGAC
* * **
2411746 CAGACCGA-GAGTTACGACAGCAGGACCCGCACCGGGATC-GATAGCACGTAGAGGGGACTGGGT
516 CAGACC-ACGAGTTACGACAGCAGGACCCGCAACGGGATCAG-CAGCACGTAGAGGGGACCAGGT
2411809 CGATCCCCGACTTACGCATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGT
579 CGATCCCCGACTTACGCATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGT
2411874 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
644 TGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
2411939 GACTGG
709 GACTGG
2411945 ACCGAGGGTT
Statistics
Matches: 642, Mismatches: 62, Indels: 19
0.89 0.09 0.03
Matches are distributed among these distances:
725 3 0.00
726 533 0.83
727 5 0.01
728 2 0.00
729 99 0.15
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (728 bp):
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAG
GTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGGGAATTTTTTTCAAACGGTCACAAAATCT
TCTCCACTTCGAGTTTTTAGCTGAATTTGTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCT
ACCAAATTTAGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTC
AAAAATCGGGAAAAAAAGAAAACAAGTCATCCTGCCACGAAACTTCACATGAAAGATTAGGGGAC
CACTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACCACAGAAATATGAAGATGTGCCTGA
ACCCACCTACCACTCGATCGATCCACGGCTTACGCATCCCACCTCGCCGGTCAACTAAGTGCCCA
CACACTCGTTTCATGGGTTGACTTAGGCATACGTAGTGCGCTCCCAGTCTAAAATCAGACCAGAC
CACGAGTTACGACAGCAGGACCCGCAACGGGATCAGCAGCACGTAGAGGGGACCAGGTCGATCCC
CGACTTACGCATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTA
GGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGT
GGTCGAAGTGGTT
Found at i:2411912 original size:26 final size:26
Alignment explanation
Indices: 2411882--2411934 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2411872 GTTGACTTAG
2411882 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
2411908 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2411934 G
1 G
2411935 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2412063 original size:197 final size:196
Alignment explanation
Indices: 2411727--2412092 Score: 502
Period size: 197 Copynumber: 1.9 Consensus size: 196
2411717 CGTAGTGCGC
* * *
2411727 TCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGACAGCAGGACCCGCACCGGGATCGATAGCA
1 TCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGACAGCAGGACCAGCACCAGGATCGACAGCA
* * * *
2411792 CGTAGAGGGGACTGGGTCGATCCCCGACTTACGCATCCTGCCTCTCTGGCCGACTGAGCGCCCGC
66 CGCAGAGGGGACTGGGCCGATCCCCGACTTACACATCCTGCCTCTCCGGCCGACTGAGCGCCCGC
2411857 ACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
131 ACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
2411922 T
196 T
** * * *
2411923 TCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGGCAAG-AGGACCAGCAGCAGGATCGACAGC
1 TCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGAC-AGCAGGACCAGCACCAGGATCGACAGC
* * ** * *
2411987 ACGCAGGGGGGA-TGGGGCCGATTCCCCGACTTGCACATTTTGCCTCTCCGGCTGGCTGAGCGCC
65 ACGCAGAGGGGACT-GGGCCGA-TCCCCGACTTACACATCCTGCCTCTCCGGCCGACTGAGCGCC
* * *
2412051 CGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
128 CGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCA
2412093 ATCCATGTCT
Statistics
Matches: 146, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
195 1 0.01
196 69 0.47
197 76 0.52
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.20
Consensus pattern (196 bp):
TCCCAGTCTAAGATCAGACCAGACCGAGAGTTACGACAGCAGGACCAGCACCAGGATCGACAGCA
CGCAGAGGGGACTGGGCCGATCCCCGACTTACACATCCTGCCTCTCCGGCCGACTGAGCGCCCGC
ACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGAAGTTCA
T
Found at i:2412275 original size:26 final size:26
Alignment explanation
Indices: 2412238--2412290 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2412228 GTTGACTTAG
2412238 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2412264 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2412290 G
1 G
2412291 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2412869 original size:45 final size:44
Alignment explanation
Indices: 2412732--2412889 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 44
2412722 AGGCTCGGCA
* * * * *
2412732 TGTGCAGATGGTGGTCGAGGCAACCGTCTGCACCACGGCCTAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCAGCT
** * * * * *
2412777 TGTGCTAATGGTGTTCGATGCAACCACCCGCACCAGGGACCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGCCCAGCT
*
2412822 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGTCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGG-CCCAGCT
2412867 TGTGCCGATGGTGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2412890 GTGCCCGTAC
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
44 2 0.02
45 90 0.98
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.19
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGCCCAGCT
Found at i:2413848 original size:26 final size:26
Alignment explanation
Indices: 2413818--2413870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2413808 GTTGACTTAG
2413818 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2413844 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2413870 G
1 G
2413871 ATTGGACCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2414717 original size:45 final size:45
Alignment explanation
Indices: 2414646--2414787 Score: 151
Period size: 45 Copynumber: 3.2 Consensus size: 45
2414636 CCGGGGCTTG
* *
2414646 GCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCA
1 GCATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
* * * * *
2414691 GCATGTGTCGATGGTGTTCGATGCAACCTCCCGTACCAAGGGCCA
1 GCATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
* * * * *
2414736 TCTTGTG-CTGATGGTGGTCAAGGCAACCATCCGCACCAGGGCCCA
1 GCATGTGTC-GATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
*
2414781 GCTTGTG
1 GCATGTG
2414788 CCATTGGTGA
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 1 0.01
45 78 0.99
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
GCATGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCA
Found at i:2415784 original size:26 final size:26
Alignment explanation
Indices: 2415746--2415801 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2415736 TGGGTTGACT
*
2415746 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCAAACGGAGTTCATCCCCAGTC
* *
2415772 TAAGCAAATGGAGTTCATTCCCAGTC
1 TAAGCAAACGGAGTTCATCCCCAGTC
2415798 TAAG
1 TAAG
2415802 ATCAAACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCAAACGGAGTTCATCCCCAGTC
Found at i:2416140 original size:26 final size:26
Alignment explanation
Indices: 2416104--2416156 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2416094 GTTGACTTAG
*
2416104 GCATACGGAGTTC-TATCCTAGTCTAA
1 GCATACGGAGTTCAT-TCCCAGTCTAA
2416130 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2416156 G
1 G
2416157 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2416846 original size:14 final size:14
Alignment explanation
Indices: 2416824--2416866 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 14
2416814 TGGGTCGATG
2416824 CATGATGCCATCA-C
1 CATG-TGCCATCATC
2416838 CATGCTGCCGATCATC
1 CATG-TGCC-ATCATC
2416854 CATGTGCCATCAT
1 CATGTGCCATCAT
2416867 TTGCCATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 13 0.50
15 8 0.31
16 5 0.19
ACGTcount: A:0.23, C:0.35, G:0.16, T:0.26
Consensus pattern (14 bp):
CATGTGCCATCATC
Found at i:2417740 original size:26 final size:26
Alignment explanation
Indices: 2417708--2417763 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
2417698 TGGGTTGACT
2417708 TAAGCATACGGAGTTCA-TCCCTAGTC
1 TAAGCATACGGAGTTCATTCCC-AGTC
2417734 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
2417760 TAAG
1 TAAG
2417764 ATCAGATCGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:2418115 original size:26 final size:26
Alignment explanation
Indices: 2418066--2418118 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2418056 GTTGACTTAG
*
2418066 GCATACAGAGTTCATTCTCGGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
*
2418092 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGTTCATTCTC-AGTCTAA
2418118 G
1 G
2418119 TTCGGATTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:2418700 original size:45 final size:45
Alignment explanation
Indices: 2418561--2418852 Score: 173
Period size: 45 Copynumber: 6.5 Consensus size: 45
2418551 GGGCTCGACA
* * ** * *
2418561 TGTGCCGATGGTGGTCGA-GCAACCGCCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGGCCAGCT
* * * * * *
2418605 TGTGCC-ATTGGTGGTCGAGGCAATCACTCACTCCAAGGGTC-GAT
1 TGTGCCGA-TGGTGATCGAGGCAACCACCCACACCAAGGGCCAGCT
* * * *
2418649 AAGTGCCGATGGTGATCGAGGCAACCCCCCACACC-GGGGCCCAACT
1 -TGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGG-CCAGCT
* * * * * *
2418695 TGTGCCGATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGGCCAGCT
* * * * * * * *
2418740 TATG-CTATTGGTGGTCGAGGCAATCACCCGCTCCAAGGGCCGGCA
1 TGTGCCGA-TGGTGATCGAGGCAACCACCCACACCAAGGGCCAGCT
* * *
2418785 TGTGCTGATGGTGATCGAGGCAACCGCCCACA-CTAGGGCCCAGCT
1 TGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGG-CCAGCT
* * *
2418830 TGTGTCGATGGCGGTCGAGGCAA
1 TGTGCCGATGGTGATCGAGGCAA
2418853 GTGCCCGTAC
Statistics
Matches: 185, Mismatches: 53, Indels: 19
0.72 0.21 0.07
Matches are distributed among these distances:
43 1 0.01
44 27 0.15
45 150 0.81
46 7 0.04
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGATCGAGGCAACCACCCACACCAAGGGCCAGCT
Found at i:2418750 original size:135 final size:134
Alignment explanation
Indices: 2418547--2418848 Score: 397
Period size: 135 Copynumber: 2.2 Consensus size: 134
2418537 TCGAGGGCCG
* * * * * *
2418547 ACCGGGGCTCGACATGTGCCGATGGTGGTCGAGCAACCGCCTGCACCAGGGGCCATCTTGTGCCA
1 ACCGGGGCCCAACTTGTGCCGATGGTGGTCGAGCAACCACCCGCACCAGGGGCCATCTTATGCCA
* * *
2418612 TTGGTGGTCGAGGCAATCACTCACTCCAAGGGTCGATAAGTGCCGATGGTGATCGAGGCAACCCC
66 TTGGTGGTCGAGGCAATCACCCACTCCAAGGGCCGACAAGTGCCGATGGTGATCGAGGCAACCCC
2418677 CCAC
131 CCAC
* * *
2418681 ACCGGGGCCCAACTTGTGCCGATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCTTATGCT
1 ACCGGGGCCCAACTTGTGCCGATGGTGGTCGA-GCAACCACCCGCACCAGGGGCCATCTTATGCC
* * * * *
2418746 ATTGGTGGTCGAGGCAATCACCCGCTCCAAGGGCCGGCATGTGCTGATGGTGATCGAGGCAACCG
65 ATTGGTGGTCGAGGCAATCACCCACTCCAAGGGCCGACAAGTGCCGATGGTGATCGAGGCAACCC
2418811 CCCAC
130 CCCAC
** * * *
2418816 ACTAGGGCCCAGCTTGTGTCGATGGCGGTCGAG
1 ACCGGGGCCCAACTTGTGCCGATGGTGGTCGAG
2418849 GCAAGTGCCC
Statistics
Matches: 144, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
134 29 0.20
135 115 0.80
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (134 bp):
ACCGGGGCCCAACTTGTGCCGATGGTGGTCGAGCAACCACCCGCACCAGGGGCCATCTTATGCCA
TTGGTGGTCGAGGCAATCACCCACTCCAAGGGCCGACAAGTGCCGATGGTGATCGAGGCAACCCC
CCAC
Found at i:2418890 original size:135 final size:135
Alignment explanation
Indices: 2418561--2418892 Score: 319
Period size: 135 Copynumber: 2.5 Consensus size: 135
2418551 GGGCTCGACA
* ** * * * * * * *
2418561 TGTGCCGATGGTGGTCGA-GCAACCGCCTGCACCAGGGGCCATCTTGTGCCATTGGTGGTCGAGG
1 TGTGCCGATGGCGGTCGAGGCAACTACCCGCACCAAGGGCCAGCATATGCGATTGATGGTCGAGG
* * * *
2418625 CAATCACTCACTCCAAGGGTCGATAAGTGCCGATGGTGATCGAGGCAACCCCCCACACCGGGGCC
66 CAATCACCCACTCCAAGGGCCGACAAGTGCCGATGGTGATCGAGGCAACCCCCCACACCAGGGCC
2418690 CAACT
131 CAACT
* * * * * * * *
2418695 TGTGCCGATGGTGTTCGATGCAACTACCCGCACCAGGGGCCATCTTATGCTATTGGTGGTCGAGG
1 TGTGCCGATGGCGGTCGAGGCAACTACCCGCACCAAGGGCCAGCATATGCGATTGATGGTCGAGG
* * * * * *
2418760 CAATCACCCGCTCCAAGGGCCGGCATGTGCTGATGGTGATCGAGGCAACCGCCCACACTAGGGCC
66 CAATCACCCACTCCAAGGGCCGACAAGTGCCGATGGTGATCGAGGCAACCCCCCACACCAGGGCC
*
2418825 CAGCT
131 CAACT
* * * * *
2418830 TGTGTCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGG-CAGCATGTGCCGA-TGATGGTCGA
1 TGTGCCGATGGCGGTCGAGGCAACTACCCGCACC-AAGGGCCAGCATATG-CGATTGATGGTCGA
2418893 TGCATGTACC
Statistics
Matches: 165, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
134 17 0.10
135 142 0.86
136 6 0.04
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (135 bp):
TGTGCCGATGGCGGTCGAGGCAACTACCCGCACCAAGGGCCAGCATATGCGATTGATGGTCGAGG
CAATCACCCACTCCAAGGGCCGACAAGTGCCGATGGTGATCGAGGCAACCCCCCACACCAGGGCC
CAACT
Found at i:2419824 original size:26 final size:26
Alignment explanation
Indices: 2419795--2419847 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2419785 GTTGACTTAG
*
2419795 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2419821 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2419847 G
1 G
2419848 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2420181 original size:26 final size:26
Alignment explanation
Indices: 2420151--2420229 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
2420141 TTTGACTTAG
2420151 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCGTTCCCAGTCTAA
2420177 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCGTTCCCAGTCTAA
*
2420203 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCGTTCCCAGTCTAA
2420229 G
1 G
2420230 ATCGGACCGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCGTTCCCAGTCTAA
Found at i:2422192 original size:26 final size:26
Alignment explanation
Indices: 2422158--2422210 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2422148 GTTGACTTAG
2422158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2422184 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2422210 G
1 G
2422211 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2422741 original size:45 final size:45
Alignment explanation
Indices: 2422669--2422775 Score: 142
Period size: 45 Copynumber: 2.4 Consensus size: 45
2422659 GGCATCTGTT
* * *
2422669 GATGGTGGTCAAGGCAACCGCCAGCACCATGGCCCAGCATGTGCC
1 GATGGTGGTCGAGGCAACCACCAGCACCAAGGCCCAGCATGTGCC
* * *
2422714 GATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCTTTTGCC
1 GATGGTGGTCGAGGCAACCACCAGCACCAAGGCCCAGCATGTGCC
* *
2422759 GATGGTGATTGAGGCAA
1 GATGGTGGTCGAGGCAA
2422776 GTGCCCATAC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.22, C:0.30, G:0.32, T:0.16
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACCACCAGCACCAAGGCCCAGCATGTGCC
Found at i:2423561 original size:26 final size:26
Alignment explanation
Indices: 2423532--2423584 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2423522 GTTGACTTCG
2423532 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* * * *
2423558 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
2423584 G
1 G
2423585 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:2424491 original size:45 final size:45
Alignment explanation
Indices: 2424369--2424524 Score: 141
Period size: 45 Copynumber: 3.5 Consensus size: 45
2424359 GCTCGGCATG
* * * * * * *
2424369 TGCCGATGGTGATCGAGGCAACCGCTCACACTACGGTCCAGCATC
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTA
* * * *
2424414 TGCCGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCTTA
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTA
* * ** *
2424459 TGCCGATGGTGGTCGAGGTAACCGTCTGCACCAGGGCCCAGCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTA
* **
2424504 TGCCAATGGCAGTCGAGGCAA
1 TGCCGATGGTGGTCGAGGCAA
2424525 GTGCCCGTAC
Statistics
Matches: 89, Mismatches: 22, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.19
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTA
Found at i:2425909 original size:45 final size:45
Alignment explanation
Indices: 2425845--2425996 Score: 187
Period size: 45 Copynumber: 3.4 Consensus size: 45
2425835 AGCACAAGCT
* * *
2425845 GATGGTGGTCGAGGCAACCGCTCGCACCATGGCCCAACATGTGCC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAACTTGTGCC
* * * * * *
2425890 GATGGTGTTCGATGCAACCGCCCACAGCAGGGGCCATCTTGTGCC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAACTTGTGCC
* * * *
2425935 AATGGTGGTGGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGTC
1 GATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAACTTGTGCC
2425980 GATGGTGGTCGAGGCAA
1 GATGGTGGTCGAGGCAA
2425997 GTGCCATTGC
Statistics
Matches: 87, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 87 1.00
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAACTTGTGCC
Found at i:2426971 original size:26 final size:26
Alignment explanation
Indices: 2426934--2426985 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2426924 GTTGACTTAG
*
2426934 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
2426960 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2426986 CATCGGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2427856 original size:18 final size:18
Alignment explanation
Indices: 2427833--2427870 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
2427823 CTCGCACCAA
2427833 GGGCCATCTTGTGTCGAT
1 GGGCCATCTTGTGTCGAT
2427851 GGGCCATCTTGTGTCGAT
1 GGGCCATCTTGTGTCGAT
2427869 GG
1 GG
2427871 TGGTCGAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.11, C:0.21, G:0.37, T:0.32
Consensus pattern (18 bp):
GGGCCATCTTGTGTCGAT
Found at i:2429304 original size:26 final size:26
Alignment explanation
Indices: 2429274--2429326 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2429264 GTTGACTTAG
2429274 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2429300 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2429326 G
1 G
2429327 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2429849 original size:45 final size:45
Alignment explanation
Indices: 2429779--2430023 Score: 190
Period size: 45 Copynumber: 5.4 Consensus size: 45
2429769 CGGGGCTCGA
* * *
2429779 CATGTACCAATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * * * * * *
2429824 CATGTGCCGATGGTGTTCGATGCAACTGCTCACACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * * *
2429869 CTTGTGCCGATGGTGGTCGAGGCAATCGCTCGCACCGAGGG-CTAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCCAG
* ** ** * *
2429914 TATGTGCTAATGGTTATCGAGGCAACTGCCCGCACTAGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
* * ** *
2429959 CTTGTGCCGATGGTGGTCGAGGTAAGTGCCCGTACCAAAGGG--CAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC--AGGGCCCAG
* *
2430004 CCTGTGCCGATGATGGTCGA
1 CATGTGCCGATGGTGGTCGA
2430024 TGAATGTGCC
Statistics
Matches: 155, Mismatches: 41, Indels: 8
0.76 0.20 0.04
Matches are distributed among these distances:
44 4 0.03
45 143 0.92
46 4 0.03
47 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG
Found at i:2429941 original size:90 final size:90
Alignment explanation
Indices: 2429788--2429980 Score: 237
Period size: 90 Copynumber: 2.1 Consensus size: 90
2429778 ACATGTACCA
* *
2429788 ATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAACTGC
1 ATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCAATGGTGTTCGAGGCAACTGC
* * *
2429853 TCACACCAGGGGCCATCTTGTGCCG
66 CCACACCAGGGCCCAGCTTGTGCCG
* * * * * *
2429878 ATGGTGGTCGAGGCAATCGCTCGCACCGA-GGGCTAGTATGTGCTAATGGT-TATCGAGGCAACT
1 ATGGTGGTCGAGGCAACCGCCCGCACC-ACGGCCCAGCATGTGCCAATGGTGT-TCGAGGCAACT
* *
2429941 GCCCGCACTAGGGCCCAGCTTGTGCCG
64 GCCCACACCAGGGCCCAGCTTGTGCCG
2429968 ATGGTGGTCGAGG
1 ATGGTGGTCGAGG
2429981 TAAGTGCCCG
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
89 1 0.01
90 86 0.98
91 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.34, T:0.20
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCAATGGTGTTCGAGGCAACTGC
CCACACCAGGGCCCAGCTTGTGCCG
Found at i:2430010 original size:90 final size:90
Alignment explanation
Indices: 2429788--2430010 Score: 236
Period size: 90 Copynumber: 2.5 Consensus size: 90
2429778 ACATGTACCA
* * * * ** *
2429788 ATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGT-TCGATGCAACTG
1 ATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCTAGCATGTGCTAATGGT-TATCGAGGCAACTG
* * *
2429852 CTCACACCAGGGGCCATCTTGTGCCG
65 CCCACACCAGGGCCCAGCTTGTGCCG
* * *
2429878 ATGGTGGTCGAGGCAATCGCTCGCACCGAGGGCTAGTATGTGCTAATGGTTATCGAGGCAACTGC
1 ATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCTAGCATGTGCTAATGGTTATCGAGGCAACTGC
* *
2429943 CCGCACTAGGGCCCAGCTTGTGCCG
66 CCACACCAGGGCCCAGCTTGTGCCG
* * *
2429968 ATGGTGGTCGAGGTAAGT-GCCCGTACCAAAGGGC-AGCCTGTGC
1 ATGGTGGTCGAGGCAA-TCGCCCGCACC-AAGGGCTAGCATGTGC
2430011 CGATGATGGT
Statistics
Matches: 109, Mismatches: 21, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
89 1 0.01
90 102 0.94
91 6 0.06
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCTAGCATGTGCTAATGGTTATCGAGGCAACTGC
CCACACCAGGGCCCAGCTTGTGCCG
Found at i:2431685 original size:45 final size:45
Alignment explanation
Indices: 2431607--2431748 Score: 169
Period size: 45 Copynumber: 3.2 Consensus size: 45
2431597 GATAGTGGCC
* * * *
2431607 GAGGCAACCACCCACACCATGGCCCAGCATGTGCCAATGGT-GTT
1 GAGGCAACCACCCACACCAGGGCCCAACTTGTGCCGATGGTGGTT
* * * *
2431651 CGATGCAAGCACCCACACTAGGGTCCAACTTGTGCCGATGGTGGTT
1 -GAGGCAACCACCCACACCAGGGCCCAACTTGTGCCGATGGTGGTT
* * *
2431697 GAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTC
1 GAGGCAACCACCCACACCAGGGCCCAACTTGTGCCGATGGTGGTT
2431742 GAGGCAA
1 GAGGCAA
2431749 GTGCCCGTAC
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 78 0.96
46 3 0.04
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.15
Consensus pattern (45 bp):
GAGGCAACCACCCACACCAGGGCCCAACTTGTGCCGATGGTGGTT
Found at i:2431780 original size:90 final size:90
Alignment explanation
Indices: 2431607--2431785 Score: 200
Period size: 90 Copynumber: 2.0 Consensus size: 90
2431597 GATAGTGGCC
* * * * * *
2431607 GAGGCAACCACCCACACCATGGCCCAGCATGTGCCAATGGTGTTCGATGCAAGCACCCACACTAG
1 GAGGCAACCACCCACACCAGGGCCCAGCATGTGCCAATGGCGGTCGAGGCAAGCACCCACACAAA
* *
2431672 GGTCCAACTTGTGCCGATGGTGGTT
66 GGTCCAACCTGTGCCGATGATGGTT
* * **
2431697 GAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGCAAGTGCCCGTAC-CA
1 GAGGCAACCACCCACACCAGGGCCCAGCATGTGCCAATGGCGGTCGAGGCAAGCACCC--ACACA
* *
2431761 AAGG-CCAGCCTGTGTCGATGATGGT
64 AAGGTCCAACCTGTGCCGATGATGGT
2431786 CGATGCATGT
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
90 67 0.92
91 4 0.05
92 2 0.03
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (90 bp):
GAGGCAACCACCCACACCAGGGCCCAGCATGTGCCAATGGCGGTCGAGGCAAGCACCCACACAAA
GGTCCAACCTGTGCCGATGATGGTT
Found at i:2433605 original size:20 final size:20
Alignment explanation
Indices: 2433568--2433647 Score: 137
Period size: 20 Copynumber: 4.1 Consensus size: 20
2433558 CCGCACCAAG
2433568 GGCCATCTTGT-G-GATGGT
1 GGCCATCTTGTGGCGATGGT
2433586 GGCCATCTTGTGGCGATGGT
1 GGCCATCTTGTGGCGATGGT
2433606 GGCCATCTTGTGGCGATGGT
1 GGCCATCTTGTGGCGATGGT
*
2433626 GGCCATCTTGTGTCGATGGT
1 GGCCATCTTGTGGCGATGGT
2433646 GG
1 GG
2433648 TCGAGGTAAT
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
18 11 0.19
19 1 0.02
20 47 0.80
ACGTcount: A:0.10, C:0.19, G:0.40, T:0.31
Consensus pattern (20 bp):
GGCCATCTTGTGGCGATGGT
Found at i:2438868 original size:26 final size:26
Alignment explanation
Indices: 2438839--2438888 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
2438829 GTTGACTTAG
* * *
2438839 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATACCAGTCTAA
*
2438865 GCATACAGATTTCAATACCAGTCT
1 GCATACAGAGTTCAATACCAGTCT
2438889 GAGATCAGAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCAATACCAGTCTAA
Found at i:2439048 original size:26 final size:26
Alignment explanation
Indices: 2439012--2439064 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2439002 GTTAACTTAG
2439012 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2439038 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2439064 G
1 G
2439065 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2439397 original size:26 final size:26
Alignment explanation
Indices: 2439367--2439419 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2439357 GTTGACTTAG
*
2439367 GCATACGAAGTTCATTCCTAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
* * *
2439393 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
2439419 G
1 G
2439420 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:2440769 original size:26 final size:26
Alignment explanation
Indices: 2440739--2440791 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2440729 GTTGACTTAG
2440739 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
2440765 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2440791 G
1 G
2440792 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2441638 original size:45 final size:45
Alignment explanation
Indices: 2441582--2441742 Score: 189
Period size: 45 Copynumber: 3.6 Consensus size: 45
2441572 TCGGGGCTTG
* *
2441582 GCATGTACCGATGGTGGTCGAGGCAACCACCCACACCACGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCA
* * * *
2441627 GCATGTGCCGATGGTGTTCGATGG-AACCGCTCACACCAGGGACCA
1 GCATGTGCCGATGGTGGTCGA-GGCAACCACCCACACCAGGGCCCA
* * *
2441672 TCTTGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCA
* * * *
2441717 GCTTGTGCCGTTGGCGGTGGAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
2441743 GTGCCCGTAC
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
44 2 0.02
45 92 0.96
46 2 0.02
ACGTcount: A:0.21, C:0.32, G:0.31, T:0.16
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCACCCACACCAGGGCCCA
Found at i:2443621 original size:45 final size:45
Alignment explanation
Indices: 2443520--2443679 Score: 151
Period size: 45 Copynumber: 3.6 Consensus size: 45
2443510 CGGGGCTCGA
*
2443520 CATATGCCGATGGTGGTCTAGGCAACCGCCCACACCACGGCCCAG
1 CATATGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAG
* * * * *
2443565 CATATGCCGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCAT
1 CATATGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAG
* * * * ** * *
2443610 CTTGTGTCGATGGTGGTCGAGGGAACCGCTTGA-ACCAGGGCCTAG
1 CATATGCCGATGGTGGTCGAGGCAACCGC-CCACACCACGGCCCAG
* * *
2443655 CTTGTGCCGATGGCGGTCGAGGCAA
1 CATATGCCGATGGTGGTCGAGGCAA
2443680 GTGCCCGTAC
Statistics
Matches: 94, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
45 93 0.99
46 1 0.01
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (45 bp):
CATATGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAG
Found at i:2445001 original size:26 final size:26
Alignment explanation
Indices: 2444965--2445014 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
2444955 GTTGACTTAG
2444965 GCATACAAAGTTCAGTCCCAGTCTAA
1 GCATACAAAGTTCAGTCCCAGTCTAA
* *
2444991 GCATACGAAGTTCATTCCCAGTCT
1 GCATACAAAGTTCAGTCCCAGTCT
2445015 TAGATTGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCAGTCCCAGTCTAA
Found at i:2445515 original size:26 final size:26
Alignment explanation
Indices: 2445479--2445531 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2445469 GGTGGTCGAG
2445479 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2445505 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2445531 G
1 G
2445532 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2445705 original size:26 final size:26
Alignment explanation
Indices: 2445675--2445727 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2445665 GTTGACTTAG
*
2445675 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* *
2445701 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
2445727 G
1 G
2445728 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:2446345 original size:45 final size:45
Alignment explanation
Indices: 2446181--2446338 Score: 199
Period size: 45 Copynumber: 3.5 Consensus size: 45
2446171 GGGCTCGACA
* ** *
2446181 TGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCACAGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* * * * * *
2446226 TGTGTCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* *
2446271 TGTGCCGATGGTGGTCAAGGCAACTGCCCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
*
2446316 TGTGCCGATGATGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2446339 GTGCCCGTAC
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
Found at i:2446365 original size:90 final size:90
Alignment explanation
Indices: 2446181--2446376 Score: 214
Period size: 90 Copynumber: 2.2 Consensus size: 90
2446171 GGGCTCGACA
* * * * * *
2446181 TGTGCCGATGGTGGTCGAGGCAACCGTCCGCACCACAGCCCAGCATGTGTCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCACAGCCCAGCATGTGCCGATGATGGTCGAGG
** *
2446246 CAACCACCCGCACCAGGGGCCATCT
66 CAACCACCCGCACCAAAGGCCATCC
* ** *
2446271 TGTGCCGATGGTGGTCAAGGCAACTGCCCGCACCAGGGCCCAGCTTGTGCCGATGATGGTCGAGG
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCACAGCCCAGCATGTGCCGATGATGGTCGAGG
*** *
2446336 CAAGTGCCCGTACCAAAAGG-CATCC
66 CAACCACCCGCACC-AAAGGCCATCC
*
2446361 TGTGCCGATGATGGTC
1 TGTGCCGATGGTGGTC
2446377 GATGCATGTG
Statistics
Matches: 87, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 84 0.97
91 3 0.03
ACGTcount: A:0.19, C:0.31, G:0.32, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCAAGGCAACCGCCCGCACCACAGCCCAGCATGTGCCGATGATGGTCGAGG
CAACCACCCGCACCAAAGGCCATCC
Found at i:2446410 original size:45 final size:45
Alignment explanation
Indices: 2446316--2446426 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 45
2446306 GGGCCCAGCT
* * *
2446316 TGTGCCGATGATGGTCGAGGCAAGTGCCCGTACCAAAAGGCATCC
1 TGTGCCGATGATGGTCGAGGCAAGTGCCCATACCAAAAGCCATCA
* * ***
2446361 TGTGCCGATGATGGTCGATGCATGTG-CCATCACCATGCGCCATCA
1 TGTGCCGATGATGGTCGAGGCAAGTGCCCAT-ACCAAAAGCCATCA
2446406 TGTGCC-ATTGATGGTCGAGGC
1 TGTGCCGA-TGATGGTCGAGGC
2446427 CTTGACCAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 4 0.07
45 51 0.93
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.23
Consensus pattern (45 bp):
TGTGCCGATGATGGTCGAGGCAAGTGCCCATACCAAAAGCCATCA
Found at i:2447318 original size:26 final size:26
Alignment explanation
Indices: 2447284--2447335 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
2447274 TTGACTTAGT
* *
2447284 CATACGGAGTTCATCCCCATTCTAAG
1 CATAAGGAGTTCATCCCCAGTCTAAG
* *
2447310 CATAAGGAGTTCTTTCCCAGTCTAAG
1 CATAAGGAGTTCATCCCCAGTCTAAG
2447336 ATCGGATCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (26 bp):
CATAAGGAGTTCATCCCCAGTCTAAG
Found at i:2448182 original size:45 final size:44
Alignment explanation
Indices: 2448131--2448291 Score: 150
Period size: 45 Copynumber: 3.6 Consensus size: 44
2448121 TCGGGGCTGG
2448131 GCATGTGCCGATGGTGGTCGAGGCAACCGTCCGTAC-CACA-GCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCG-CC-TACAC-CAGGCCCA
* *
2448176 GCATGTGCCGATGGTGTTCG-GTGCAACCGCCTACACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAG-GCAACCGCCTACACCA-GGCCCA
* * * * *
2448221 TCTTGTGTCGATGGTGGTCGAGGCAACCGCTTGCACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCTACACCA-GGCCCA
* *
2448266 GC-TCATGCCGATGGCGGTCGAGGCAA
1 GCAT-GTGCCGATGGTGGTCGAGGCAA
2448292 GTGCCCGTAC
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 5 0.05
45 86 0.89
46 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCTACACCAGGCCCA
Found at i:2448798 original size:26 final size:26
Alignment explanation
Indices: 2448760--2448809 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
2448750 TTGTGGTCGA
* *
2448760 AGCATATGGAGTTCATCCCCAGTCCT
1 AGCATACGAAGTTCATCCCCAGTCCT
*
2448786 AGCATACGAAGTTCATTCCCAGTC
1 AGCATACGAAGTTCATCCCCAGTC
2448810 TAAGATCGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (26 bp):
AGCATACGAAGTTCATCCCCAGTCCT
Found at i:2449616 original size:44 final size:44
Alignment explanation
Indices: 2449465--2449616 Score: 151
Period size: 44 Copynumber: 3.4 Consensus size: 44
2449455 GGGCTCAGTA
* * * * *
2449465 TGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCATGGCCCAGCA
1 TGTGTCGATGGTGGTCGA-GCAACCGCCCGCACCACGGCCCAGCT
* * * * * * *
2449510 TGTGTCGATGGTGTTTGAACAACCGCCTGCACCAGGGGCCATCT
1 TGTGTCGATGGTGGTCGAGCAACCGCCCGCACCACGGCCCAGCT
* *
2449554 TGTGCCGATGGTGGTCGAGCAACCGCCGGCACCACGGCCCAGCT
1 TGTGTCGATGGTGGTCGAGCAACCGCCCGCACCACGGCCCAGCT
* *
2449598 TGTGTTGATGGCGGTCGAG
1 TGTGTCGATGGTGGTCGAG
2449617 GCAAGTGCCC
Statistics
Matches: 85, Mismatches: 22, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
44 71 0.84
45 14 0.16
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.20
Consensus pattern (44 bp):
TGTGTCGATGGTGGTCGAGCAACCGCCCGCACCACGGCCCAGCT
Found at i:2449760 original size:26 final size:26
Alignment explanation
Indices: 2449721--2449776 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2449711 TGGGTTGACT
*
2449721 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
* *
2449747 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATCCCCAGTC
2449773 TAAG
1 TAAG
2449777 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATCCCCAGTC
Found at i:2450317 original size:45 final size:44
Alignment explanation
Indices: 2450246--2450406 Score: 187
Period size: 45 Copynumber: 3.6 Consensus size: 44
2450236 CGAAGGCTCG
* *
2450246 GCATGTACCGATGGTGGTCGAGGCAACCGCCAGCACCACGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCC-GCACCAGGGCCCA
* * *
2450291 GCATGTGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCC-GCACCAGGGCCCA
* * * *
2450336 TCTTGTGCCGATGGTGGTCGAGGCAACTGTCGACACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCG-CACCAGGGCCCA
* * *
2450381 CCTTGTGCCGATGGCGGTCGAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
2450407 GTGCCCGTAC
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
44 1 0.01
45 99 0.99
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.17
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCGCACCAGGGCCCA
Found at i:2450433 original size:90 final size:90
Alignment explanation
Indices: 2450253--2450446 Score: 203
Period size: 90 Copynumber: 2.2 Consensus size: 90
2450243 TCGGCATGTA
* * * *
2450253 CCGATGGTGGTCGAGGCAACCGCCAGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAAC
1 CCGATGGTGGTCGAGGCAACCGCCAGCACCACGGCCCACCATGTGCCGATGGCGGTCGAGGCAAC
* * * *
2450318 CGCCTGCACCAGGGGCCATCTTGTG
66 CGCCCGCACCAAGGGCCAGCCTGTG
* * * *
2450343 CCGATGGTGGTCGAGGCAACTGTC-GACACCAGGGCCCACCTTGTGCCGATGGCGGTCGAGGCAA
1 CCGATGGTGGTCGAGGCAACCGCCAG-CACCACGGCCCACCATGTGCCGATGGCGGTCGAGGCAA
** *
2450407 GTGCCCGTACCAAAGGG-CAGCCTGTG
65 CCGCCCGCACC-AAGGGCCAGCCTGTG
* *
2450433 CCAATGATGGTCGA
1 CCGATGGTGGTCGA
2450447 TGCATCTTGC
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
89 1 0.01
90 80 0.94
91 4 0.05
ACGTcount: A:0.19, C:0.31, G:0.34, T:0.16
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAACCGCCAGCACCACGGCCCACCATGTGCCGATGGCGGTCGAGGCAAC
CGCCCGCACCAAGGGCCAGCCTGTG
Found at i:2450729 original size:784 final size:784
Alignment explanation
Indices: 2449107--2450730 Score: 2154
Period size: 785 Copynumber: 2.1 Consensus size: 784
2449097 GACCACTCGT
*
2449107 ACGCTCGTTTCATGCGTTGACTTAGGCATACGAAGTTCATTCTCGGTCTAAGCTCAAACTGGATC
1 ACGCTCGTTTCATG-GTTGACTTAGGCATACGAAGTTCATTCTCGGTCTAAGCCCAAACTGGATC
* * * ** *
2449172 GAGGGACCTGCAGCGGGATCGATAGCACGTAGAGGAGGACCGGGTTGATCCTTGGCTTACGCATT
65 GAGAGACCTGCAACGGGATCGATAGCACGCAGAGGAGGACCGGGCCGATCCTCGGCTTACGCATT
* *
2449237 CTGGCTCTCCGACTTGCTGAGCACCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACATAGAG
130 CTGGCTCTCCGACTTGCTGAGCACCCACACGCTAGTTTCATGGGTTAACTTAGGCATACATAGAG
* * **
2449302 CATTCCCAGTCTCGACCAACCATGGGCCAGAAGCTATCGACGGTGTTTGGGGTAACAACCGAGGG
195 CATTCCCAGTCTCGACCAACCAAGGGCCAGAAGCTATCGACGGCGTTTGGGACAACAACCGAGGG
** * * *
2449367 GGACCAGTAGCGGGATCCTTGGTCGACTTATGCATCCCGCCCCCAACGGTCGGTTCAGTGCTCGC
260 GGACCAACAGCGGGATCCTTGGTCGACTCATGCATCCCACCCCCAACAGTCGGTTCAGTGCTCGC
* * * * *
2449432 ACGCTCGTTTCAAGGGTCGACTGGGGCTCAGTATGTGCCGATGGTGGTCAAGGCAACCGCCCGTA
325 ACGCTCGTTTCAAGGGTCGACTGAGGCTCAGCATGTACCGATGGTGGTCAAGGCAACCGCCAGCA
* * *
2449497 CCATGGCCCAGCATGTGTCGATGGTGTTTGAACAACCGCCTGCACCAGGGGCCATCTTGTGCCGA
390 CCACGGCCCAGCATGTGCCGATGGTGTTCGAACAACCGCCTGCACCAGGGGCCATCTTGTGCCGA
* * **
2449562 TGGTGGTCGAGCAACCGCCGGCACCACGGCCCAGCTTGTGTTGATGGCGGTCGAGGCAAGTGCCC
455 TGGTGGTCGAGCAACCGCCGACACCACGGCCCACCTTGTGCCGATGGCGGTCGAGGCAAGTGCCC
* * * * *
2449627 ATACCAAAGGGTAGCCTGTGCCGATGATGGTCGATGTATCCTACCTCTCTGGTCGACTGAGCGCC
520 ATACCAAAGGGCAGCCTGTGCCAATGATGGTCGATGCATCCTACCTCTCTGGCCAACTGAGCGCC
* *
2449692 CGCACGCACGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAAGCATATA
585 CGCAC-CAC-CTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAACCATACA
* * * **
2449757 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTATGATAGTAAGACCAGCAGTAGGAT
648 AAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTATGACAGCAAGACCAGCAACAGGAT
* * * * * **
2449822 CGACAGTACGCAGGAGGGATAGGTCGATCGTCGGCTTGCGTACTCTACCTCTTTGACCGGCTGAG
713 CGACAGCACGCAGGAGGGATAGGCCGATCCTCAGCTTGCGCACTCTACCTCTCCGACCGGCTGAG
*
2449887 TGCCCAC
778 CGCCCAC
* *
2449894 ACGCTCATTTCGT-GTTGACTTAGGCATACGAAGTTCATTCTCGGTCTAAGCCCAAACTGGATCG
1 ACGCTCGTTTCATGGTTGACTTAGGCATACGAAGTTCATTCTCGGTCTAAGCCCAAACTGGATCG
* * * * *
2449958 AGAGATCC-GTAATGGGATCGGTAGCACGCAGA-GAGGGATCGGGCCGATCCTCGGCTTGCGCAT
66 AGAGA-CCTGCAACGGGATCGATAGCACGCAGAGGA-GGACCGGGCCGATCCTCGGCTTACGCAT
* * * * *
2450021 TCTGGCTCTCCGGCTTGCTGAGCACCCACACGTTAGTTTCATGGGTTGACTTAGGCATACGTAGT
129 TCTGGCTCTCCGACTTGCTGAGCACCCACACGCTAGTTTCATGGGTTAACTTAGGCATACATAGA
* *
2450086 GCATTCCC-GATCTCGACCAACCAAGGGCCA-AGGCTATCGATGGCGTTTGGGACAACAACCGAG
194 GCATTCCCAG-TCTCGACCAACCAAGGGCCAGAAGCTATCGACGGCGTTTGGGACAACAACCGAG
* * * *
2450149 GGGGACCAACAGTGGGATCCTTGGTCGGCTCACT-TATCCCACCCCCAACAGTTGGTTCAGTGCT
258 GGGGACCAACAGCGGGATCCTTGGTCGACTCA-TGCATCCCACCCCCAACAGTCGGTTCAGTGCT
** * *
2450213 CGCACGCTCGTTTCGGGGGTCGAC-GAAGGCTCGGCATGTACCGATGGTGGTCGAGGCAACCGCC
322 CGCACGCTCGTTTCAAGGGTCGACTG-AGGCTCAGCATGTACCGATGGTGGTCAAGGCAACCGCC
*
2450277 AGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAACCGCCTGCACCAGGGGCCATCTTGT
386 AGCACCACGGCCCAGCATGTGCCGATGGTGTTCGA-ACAACCGCCTGCACCAGGGGCCATCTTGT
* * *
2450342 GCCGATGGTGGTCGAGGCAACTGTCGACACCAGGGCCCACCTTGTGCCGATGGCGGTCGAGGCAA
450 GCCGATGGTGGTCGA-GCAACCGCCGACACCACGGCCCACCTTGTGCCGATGGCGGTCGAGGCAA
* * *
2450407 GTGCCCGTACCAAAGGGCAGCCTGTGCCAATGATGGTCGATGCATCTTGCCTCTCTGGCCAACTG
514 GTGCCCATACCAAAGGGCAGCCTGTGCCAATGATGGTCGATGCATCCTACCTCTCTGGCCAACTG
* *
2450472 AGCGCCCGCA-CA-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAACCA
579 AGCGCCCGCACCACCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAACCA
* * *
2450535 TACAAAGTTCATTCCCAGTCTAAGATC-GATCGGACCAAGGGTTGTGACAGCAGGACCAGCAACA
644 TACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTATGACAGCAAGACCAGCAACA
* * * * ** * ***
2450599 GGATCGGCAGCACGTAGGGGGGATCGGGCCTTTCCTCAGCTTGCGCATTCTACCTCTCCGGTTGG
709 GGATCGACAGCACGCAGGAGGGAT-AGGCCGATCCTCAGCTTGCGCACTCTACCTCTCCGACCGG
*
2450664 CTGAGCGCCCGC
773 CTGAGCGCCCAC
* * * * *
2450676 ATGCTCGTTTCCTAGGTTGGCTTAGGCATACGGAGTTCATTC-CATGTCTAAGCCC
1 ACGCTCGTTTCAT-GGTTGACTTAGGCATACGAAGTTCATTCTC-GGTCTAAGCCC
2450731 CAGCCAGACC
Statistics
Matches: 725, Mismatches: 101, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
781 50 0.07
782 120 0.17
783 2 0.00
784 206 0.28
785 225 0.31
786 111 0.15
787 11 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.22
Consensus pattern (784 bp):
ACGCTCGTTTCATGGTTGACTTAGGCATACGAAGTTCATTCTCGGTCTAAGCCCAAACTGGATCG
AGAGACCTGCAACGGGATCGATAGCACGCAGAGGAGGACCGGGCCGATCCTCGGCTTACGCATTC
TGGCTCTCCGACTTGCTGAGCACCCACACGCTAGTTTCATGGGTTAACTTAGGCATACATAGAGC
ATTCCCAGTCTCGACCAACCAAGGGCCAGAAGCTATCGACGGCGTTTGGGACAACAACCGAGGGG
GACCAACAGCGGGATCCTTGGTCGACTCATGCATCCCACCCCCAACAGTCGGTTCAGTGCTCGCA
CGCTCGTTTCAAGGGTCGACTGAGGCTCAGCATGTACCGATGGTGGTCAAGGCAACCGCCAGCAC
CACGGCCCAGCATGTGCCGATGGTGTTCGAACAACCGCCTGCACCAGGGGCCATCTTGTGCCGAT
GGTGGTCGAGCAACCGCCGACACCACGGCCCACCTTGTGCCGATGGCGGTCGAGGCAAGTGCCCA
TACCAAAGGGCAGCCTGTGCCAATGATGGTCGATGCATCCTACCTCTCTGGCCAACTGAGCGCCC
GCACCACCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATCCCCAGTCTAACCATACAAAG
TTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTATGACAGCAAGACCAGCAACAGGATCGA
CAGCACGCAGGAGGGATAGGCCGATCCTCAGCTTGCGCACTCTACCTCTCCGACCGGCTGAGCGC
CCAC
Found at i:2450896 original size:26 final size:26
Alignment explanation
Indices: 2450860--2450912 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2450850 GTTGACTTAG
2450860 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
2450886 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2450912 G
1 G
2450913 ATTGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2451503 original size:45 final size:45
Alignment explanation
Indices: 2451368--2451535 Score: 160
Period size: 45 Copynumber: 3.7 Consensus size: 45
2451358 GCTCGACATA
* * * * * *
2451368 TGCCGATAGTGGTCGAGACAACCGCCTACACCACGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCATACCAGGGCCCAGCTTG
* * * * * *
2451413 TGTCGATGGTGTTCGATGCAACCGGCCACAT-CGAGAG-CCATCTTG
1 TGCCGATGGTGGTCGAGGCAACC-GCC-CATACCAGGGCCCAGCTTG
2451458 TGCCGATGGTGGTCGAGGCAACCGCCCATACCAGGGCCCAGCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCATACCAGGGCCCAGCTTG
* * **
2451503 TGTCGATGGCGGTCGAGGCAAGTGCCCATACCA
1 TGCCGATGGTGGTCGAGGCAACCGCCCATACCA
2451536 AAAGGTAGCC
Statistics
Matches: 97, Mismatches: 22, Indels: 8
0.76 0.17 0.06
Matches are distributed among these distances:
43 3 0.03
44 7 0.07
45 80 0.82
46 6 0.06
47 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCATACCAGGGCCCAGCTTG
Found at i:2452699 original size:26 final size:26
Alignment explanation
Indices: 2452663--2452715 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2452653 GTTAACTTAG
2452663 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2452689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2452715 G
1 G
2452716 ATCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2453264 original size:45 final size:45
Alignment explanation
Indices: 2453215--2453339 Score: 121
Period size: 45 Copynumber: 2.8 Consensus size: 45
2453205 CAGCCCGGCA
* * *
2453215 TGTACCGATGGTGTTCGATGCAATCGCCCGTACCTGGGGC-CATCT
1 TGTACCGATGGTGTTCGAGGCAATCGCCCGTACC-AGGGCTCAACT
* * * * *
2453260 TGTACTGATGGTGGTCGAGGTAACCGCCCGCACCAGGGCTCAACT
1 TGTACCGATGGTGTTCGAGGCAATCGCCCGTACCAGGGCTCAACT
*
2453305 TGTGCCGATGGTGGTT-GAGGCAAGT-GCCCGTACCA
1 TGTACCGATGGT-GTTCGAGGCAA-TCGCCCGTACCA
2453340 AAAGGCAGCC
Statistics
Matches: 63, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
44 4 0.06
45 57 0.90
46 2 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (45 bp):
TGTACCGATGGTGTTCGAGGCAATCGCCCGTACCAGGGCTCAACT
Found at i:2453388 original size:13 final size:13
Alignment explanation
Indices: 2453370--2453394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2453360 ATGGTCGATA
2453370 CATGTGCCATCAC
1 CATGTGCCATCAC
2453383 CATGTGCCATCA
1 CATGTGCCATCA
2453395 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2454979 original size:45 final size:45
Alignment explanation
Indices: 2454878--2455082 Score: 200
Period size: 45 Copynumber: 4.6 Consensus size: 45
2454868 CGAGACTCGA
* * * *
2454878 CTTGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCACGACCTAG
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCGAG
* * * * *
2454923 CATGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGTGCC-AT
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGG-GCCGAG
* * *
2454968 CTTGTGCCGATGGTGGTCGAGGCAATCGTCAGCACCAAGGGCCG-G
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCGAG
* ** *
2455013 -TATGTGTCGATGGTGAACGAGGCAACCGCCCGCACCAGGGCCCAG
1 CT-TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCGAG
* *
2455058 CTTGTGCCTATGGCGGTCGAGGCAA
1 CTTGTGCCGATGGTGGTCGAGGCAA
2455083 GTGCCCGTAC
Statistics
Matches: 126, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
44 7 0.06
45 113 0.90
46 6 0.05
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCGAG
Found at i:2455038 original size:90 final size:90
Alignment explanation
Indices: 2454878--2455082 Score: 263
Period size: 90 Copynumber: 2.3 Consensus size: 90
2454868 CGAGACTCGA
**
2454878 CTTGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCACGACCTAGCATGTGTCGATGGTGTTCGA
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCACGACCTAGCATGTGTCGATGGTGAACGA
* *
2454943 TGCAACCGCCCGCACCAGGTG-CCAT
66 GGCAACCGCCCGCACCAGG-GCCCAG
* * * * *
2454968 CTTGTGCCGATGGTGGTCGAGGCAATCG-TCAGCACCAAGGGCC-GGTATGTGTCGATGGTGAAC
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCTC-GCACC-ACGACCTAGCATGTGTCGATGGTGAAC
2455031 GAGGCAACCGCCCGCACCAGGGCCCAG
64 GAGGCAACCGCCCGCACCAGGGCCCAG
* *
2455058 CTTGTGCCTATGGCGGTCGAGGCAA
1 CTTGTGCCGATGGTGGTCGAGGCAA
2455083 GTGCCCGTAC
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
89 3 0.03
90 94 0.93
91 4 0.04
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (90 bp):
CTTGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCACGACCTAGCATGTGTCGATGGTGAACGA
GGCAACCGCCCGCACCAGGGCCCAG
Found at i:2455109 original size:90 final size:90
Alignment explanation
Indices: 2454878--2455114 Score: 250
Period size: 90 Copynumber: 2.6 Consensus size: 90
2454868 CGAGACTCGA
* * * * **
2454878 CTTGTGCCGATGGTGGTCGAGGCAACCGCTC-GCACC-ACGACCTAGCATGTGTCGATGGTGTTC
1 CTTGTGCCGATGGCGGTCGAGGCAATCGC-CAGCACCAAGGGCC-AGCATGTGTCGATGGTGAAC
* *
2454941 GATGCAACCGCCCGCACCAGGTGCCAT
64 GAGGCAACCGCCCGCACCAGGTGCCAG
* * * *
2454968 CTTGTGCCGATGGTGGTCGAGGCAATCGTCAGCACCAAGGGCCGGTATGTGTCGATGGTGAACGA
1 CTTGTGCCGATGGCGGTCGAGGCAATCGCCAGCACCAAGGGCCAGCATGTGTCGATGGTGAACGA
2455033 GGCAACCGCCCGCACCAGG-GCCCAG
66 GGCAACCGCCCGCACCAGGTG-CCAG
* * * *
2455058 CTTGTGCCTATGGCGGTCGAGGCAAGT-GCCCGTACCAAAGGG-CAGCCTGTGTCGATG
1 CTTGTGCCGATGGCGGTCGAGGCAA-TCGCCAGCACC-AAGGGCCAGCATGTGTCGATG
2455115 ATGGTCGATG
Statistics
Matches: 124, Mismatches: 18, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
89 2 0.02
90 112 0.90
91 10 0.08
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.19
Consensus pattern (90 bp):
CTTGTGCCGATGGCGGTCGAGGCAATCGCCAGCACCAAGGGCCAGCATGTGTCGATGGTGAACGA
GGCAACCGCCCGCACCAGGTGCCAG
Found at i:2465228 original size:26 final size:26
Alignment explanation
Indices: 2465176--2465228 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
2465166 GTTGACTTTG
* *
2465176 GCATACGGAGTTCATCCCCGGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* * *
2465202 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2465228 G
1 G
2465229 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2466701 original size:137 final size:139
Alignment explanation
Indices: 2466517--2466841 Score: 345
Period size: 135 Copynumber: 2.4 Consensus size: 139
2466507 GCGCTCGCTT
* *
2466517 GCTCATTTCATGGGTTGGCTTAGGCATATGGAGTTCATT-CCATGTCTAAGCCCTAGCGGGACC-
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGCCC-AGC-GGACCG
* * * *
2466580 A-A-CAGCACGCAGAGGGGGACCG-AGCTGATC-CCGGGCTTGCGTAA-TATGCCTCTCCGCT-G
63 ATAGCAGCACACAGAGGGGGACAGTA-CCGATCTCC-GGCTTGCGTAACT-TGCCTCTCCGATCG
** *
2466639 GCTT-AGGGCTCGCAA
125 G-TTGAGCACCCGCAA
* *
2466654 GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA----ATCGGACCGATA
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCAGCGGACCGATA
* *
2466715 GCAGCACACAGAGGGGGACAGTACCGATCTTCGGCTTGCGTAACTTGCCTCTTCGATCGGTTGAG
66 GCAGCACACAGAGGGGGACAGTACCGATCTCCGGCTTGCGTAACTTGCCTCTCCGATCGGTTGAG
*
2466780 CACCCGCAC
131 CACCCGCAA
*
2466789 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTC-GATCTAAGCCC
1 GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCCC
2466842 CAACCCGACA
Statistics
Matches: 158, Mismatches: 16, Indels: 26
0.79 0.08 0.13
Matches are distributed among these distances:
131 5 0.03
132 3 0.02
133 1 0.01
134 47 0.30
135 57 0.36
137 42 0.27
138 3 0.02
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (139 bp):
GCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCCCAGCGGACCGATA
GCAGCACACAGAGGGGGACAGTACCGATCTCCGGCTTGCGTAACTTGCCTCTCCGATCGGTTGAG
CACCCGCAA
Found at i:2467211 original size:45 final size:45
Alignment explanation
Indices: 2467143--2467267 Score: 151
Period size: 45 Copynumber: 2.8 Consensus size: 45
2467133 AGGCTTGACT
*
2467143 TGTGCCGACGGTGGTCGAGGCAACCGCCTGCACCACGACCCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCACGACCCAACA
* * * * ** * *
2467188 TGTGCCGATGGAGTTCGATGCAACCGCCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCACGACCCAACA
* *
2467233 TGTGCCGATGGTGGTCGAGGCAATCGCCAGCACCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCA
2467268 AGGGTCGGTA
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCACGACCCAACA
Found at i:2467301 original size:90 final size:90
Alignment explanation
Indices: 2467141--2467345 Score: 212
Period size: 90 Copynumber: 2.3 Consensus size: 90
2467131 CGAGGCTTGA
* * * * *
2467141 CTTGTGCCGACGGTGGTCGAGGCAACCGCCTGCACCACGACCCAACATGTGCCGATGGAGTTCGA
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGCACCAAGACCCAACATGGGCCGATGGAGATCGA
* * * * *
2467206 TGCAACCGCCTGCACCAGGGGCCAT
66 AGCAACCACCCGCACCAGGGCCCAG
* *** *** *
2467231 CTTGTGCCGATGGTGGTCGAGGCAATCGCCAGCACCAAGGGTCGGTATGGGCCGATGGTGATCGA
1 CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGCACCAAGACCCAACATGGGCCGATGGAGATCGA
*
2467296 AGCAACCACCCGCACTAGGGCCCAG
66 AGCAACCACCCGCACCAGGGCCCAG
* * *
2467321 CATGTGTCGATGGTAGTCGAGGCAA
1 CTTGTGCCGATGGTGGTCGAGGCAA
2467346 GTGCCCATAC
Statistics
Matches: 93, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.17
Consensus pattern (90 bp):
CTTGTGCCGATGGTGGTCGAGGCAACCGCCAGCACCAAGACCCAACATGGGCCGATGGAGATCGA
AGCAACCACCCGCACCAGGGCCCAG
Found at i:2468334 original size:26 final size:26
Alignment explanation
Indices: 2468298--2468350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2468288 GTTGACTTAG
*
2468298 GCATATGGAGTTCATCCCCACTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
* *
2468324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCACTCTAA
2468350 G
1 G
2468351 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCACTCTAA
Found at i:2468522 original size:197 final size:196
Alignment explanation
Indices: 2468143--2468509 Score: 436
Period size: 197 Copynumber: 1.9 Consensus size: 196
2468133 CGTAGTGCGC
* * * * * *
2468143 TCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCAGTAGAAAGACCCGCAGTGAGATCGACAGCA
1 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGAAAGACCAGCAGTGAGATCGACAACA
* * * * * *
2468208 CGTAGAGGGGACCGGGTCGATCCCTGGCTTACGCATCCTGCCTCTCTGGCTGGCTGAGCGCCCGC
66 CGCAGAGGGGACCGGGCCGATCCCTGACTTACGCATCCTGCATCTCTGGCTGACTGAGAGCCCGC
* ** *
2468273 ACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATCCCCACTCTAAGCATACGGAGTTCA
131 ACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCACTCTAAGCATACGGAGTTCA
2468338 T
196 T
** * * *
2468339 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGTAGTAGGACCAGCAGT-AGGATCGATAAC
1 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGAAAGACCAGCAGTGA-GATCGACAAC
* *
2468403 ACGCAGAGGGGGATCGGGCCGAT-CCTCGACTTACGCATTCTGCATCT-TCGG-TCGACTGAGAG
65 ACGCAGA-GGGGACCGGGCCGATCCCT-GACTTACGCATCCTGCATCTCT-GGCT-GACTGAGAG
* *
2468465 CCTGCACGCTCCTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT
126 CCCGCACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
2468510 TCCATGTCTA
Statistics
Matches: 141, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
195 1 0.01
196 62 0.44
197 78 0.55
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.23
Consensus pattern (196 bp):
TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGTAGAAAGACCAGCAGTGAGATCGACAACA
CGCAGAGGGGACCGGGCCGATCCCTGACTTACGCATCCTGCATCTCTGGCTGACTGAGAGCCCGC
ACGCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCACTCTAAGCATACGGAGTTCA
T
Found at i:2473919 original size:26 final size:26
Alignment explanation
Indices: 2473889--2473941 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2473879 TTTGACTTAG
* *
2473889 GCATATGGTGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2473915 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2473941 G
1 G
2473942 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2474294 original size:26 final size:26
Alignment explanation
Indices: 2474264--2474314 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2474254 TGACTTAGGA
2474264 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
2474290 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
2474315 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:2474886 original size:45 final size:43
Alignment explanation
Indices: 2474837--2474955 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 43
2474827 CCCGCCCTAG
*
2474837 GGGCCATCTTATGCCGATGGTGGTCGAGGCAATCACCCACACCAA
1 GGGCCA-CTTGTGCCGATGGTGGTCGAGGCAATCACCCACACC-A
* * * * *
2474882 GGGCCGACATGTGCCGATGGTGATCAAGGCAATCGCCCGCACCA
1 GGGCC-ACTTGTGCCGATGGTGGTCGAGGCAATCACCCACACCA
* *
2474926 GGGCCCAGCTTGTGCCAATGGCGGTCGAGG
1 GGG-CCA-CTTGTGCCGATGGTGGTCGAGG
2474956 TAAGTGCCCG
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
44 5 0.08
45 54 0.90
46 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (43 bp):
GGGCCACTTGTGCCGATGGTGGTCGAGGCAATCACCCACACCA
Found at i:2476286 original size:26 final size:26
Alignment explanation
Indices: 2476256--2476308 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2476246 GTTGACTTAG
*
2476256 GCATACGGAGTTCATTCCCAATCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
* *
2476282 GCATAAGGAGTTCATTCCTAGTCTAA
1 GCATAAGGAGTTCATTCCCAATCTAA
2476308 G
1 G
2476309 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAATCTAA
Found at i:2476849 original size:45 final size:45
Alignment explanation
Indices: 2476757--2476907 Score: 160
Period size: 45 Copynumber: 3.4 Consensus size: 45
2476747 ACATGTGCCA
* * * * * *
2476757 ATGGTGGTCGAGGTAACCGCCCTCACCATGGCCCAG-TATGTGCCG
1 ATGGTGGTTGAGGCAACCACCCACACCAGGGCCCAGCT-TGTGTCG
* * * * * *
2476802 ATGGTGTTTGATGCAACCGCCCGCACCAGGGGCCATCTTGTGTCG
1 ATGGTGGTTGAGGCAACCACCCACACCAGGGCCCAGCTTGTGTCG
* *
2476847 ATGGTGGTTAAGGCAATCACCCACACCAGGGCCCAGCTTGTGTCG
1 ATGGTGGTTGAGGCAACCACCCACACCAGGGCCCAGCTTGTGTCG
2476892 ATGGTGGTTGAGGCAA
1 ATGGTGGTTGAGGCAA
2476908 GTGTCCGTAC
Statistics
Matches: 87, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
45 86 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (45 bp):
ATGGTGGTTGAGGCAACCACCCACACCAGGGCCCAGCTTGTGTCG
Found at i:2476968 original size:13 final size:13
Alignment explanation
Indices: 2476950--2476974 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2476940 ATGGTCAATG
2476950 CATGTGCCATCAC
1 CATGTGCCATCAC
2476963 CATGTGCCATCA
1 CATGTGCCATCA
2476975 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2478171 original size:158 final size:158
Alignment explanation
Indices: 2477879--2478177 Score: 370
Period size: 158 Copynumber: 1.9 Consensus size: 158
2477869 AGACCAGCAG
* * **
2477879 CAGCACGCAGAGGGGTACCAGGCCAATCCTCAGCTTGCGTATCCTGCCTCTCCGGTCGGTTGAGC
1 CAGCACGCAGAGGGGGACCAGGCCAACCCTCAGCTTGCGTATCCTGCCTCTCCGACCGGTTGAGC
* ** * * * *
2477944 GCCCACACGCTTGTTTCGTCGGTTGACTTAGGCATACGGAGTTTATTCCCGATCTAAGCCCTAAT
66 GCCCACACACTCATTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCGATCTAAGCCCTAAC
*
2478009 CGGATTGAGGGACCTGCAACAGGATCGA
131 CGGATCGAGGGACCTGCAACAGGATCGA
* * *
2478037 CAGCACGCAGAGGGGGATCAGGCCAACCCTC-GACTTGCGTATTCTGGCTCTCCGACCGGTTGAG
1 CAGCACGCAGAGGGGGACCAGGCCAACCCTCAG-CTTGCGTATCCTGCCTCTCCGACCGGTTGAG
** * *
2478101 CGCCTGCACACTCATTTCAT-GAGTTGACTTAGGCATACAGAGTTCATTCCATG-TTTAAGCCCT
65 CGCCCACACACTCATTTCATCG-GTTGACTTAGGCATACAGAGTTCATTCC-CGATCTAAGCCCT
*
2478164 AGCCGGATCGAGGG
128 AACCGGATCGAGGG
2478178 TTGTGGTAGC
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 2 0.02
158 115 0.97
159 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (158 bp):
CAGCACGCAGAGGGGGACCAGGCCAACCCTCAGCTTGCGTATCCTGCCTCTCCGACCGGTTGAGC
GCCCACACACTCATTTCATCGGTTGACTTAGGCATACAGAGTTCATTCCCGATCTAAGCCCTAAC
CGGATCGAGGGACCTGCAACAGGATCGA
Found at i:2478558 original size:453 final size:452
Alignment explanation
Indices: 2477670--2478613 Score: 1044
Period size: 453 Copynumber: 2.1 Consensus size: 452
2477660 TGTTTTGTGG
* *
2477670 GTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGTCGGACAGAGGGTTGTGGTAGC
1 GTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGTAGC
* * * * * *
2477735 GGGATCGATAGCACGTAAAGGGGGATCGAGCCGATCCCCAGCTTGCACATTATGCCTCTCCGGTC
66 GAGACCGACAGCACGCAAAGGGGGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTCCGGTC
* * * * ** *
2477800 GGCTCAGCGCTCGTACGCTCATTTTGGGGGTTGACTTAGGCATACAGAGTTCATTCTCAGTCTAA
131 GACTCAGCACCCGCACGCTCATTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
2477865 GATCAGACCAGCAGCAGCACGCAGAGGGGTACCAGGCCAATCCTCAGCTTGCGTATCCTGCCTCT
196 GATCAGACCAGCAGCAGCACGCAGAGGGATA-CAGGCCAATCCTCAGCTTACGCATCCTGCCTCT
* * ** *
2477930 CCGGTCGGTTGAGCGCCCACACGCTTGTTTCGTCGGTTGACTTAGGCATACGGAGTTTATTCCCG
260 CCGGTCGGTTGAGCACCCACACACTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCG
* * * *
2477995 ATCTAAGCCCTAATCGGATTGAGGGACCTGCAACAGGATCGACAGCACGCAGAGGGGGATCAGGC
325 ATCTAAGCCCCAACCGGAATGAGGGACCTGCAACAGGACCGACAGCACGCAGAGGGGGATCAGGC
* * * * * *
2478060 CAACCCTCGACTTGCGTATTCTGGCTCTCCGACCGGTTGAGCGCCTGCACACTCATTTCATGA
390 CAACCCTCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCACACTCATTTCATGA
* *
2478123 GTTGACTTAGGCATACAGAGTTCATTCCATGTTTAAGCCCTAGCCGGATC-GAGGGTTGTGGTAG
1 GTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGA-CAGAGGGTTGTGGTAG
* * * * *
2478187 CGAGACCGACAGCACGCAGAGGGGGACCGGGCCGATCCTC-GTCTTACGCATTATGCCTCTTCGG
65 CGAGACCGACAGCACGCAAAGGGGGACCGAGCCGATCCCCAG-CTTACACATTATGCCTCTCCGG
* ** * * *
2478251 TCGACTCAGCACCCGCATGCTTGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCT
129 TCGACTCAGCACCCGCACGCTCATTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* ** * * *
2478316 AAGATCGGACTGGCAGCAGCACGGAGAAAGGGATA-GGGTCGAA-CCTCAGCTTACGCATCCTGC
194 AAGATCAGACCAGCAGCAGCACGCAG--AGGGATACAGG-CCAATCCTCAGCTTACGCATCCTGC
* ** *
2478379 CTCTCTGGTCGGTTGAGCACCTGCACACTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T
256 CTCTCCGGTCGGTTGAGCACCCACACACTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATT
* * * *** * * *
2478443 -CCTATGTTTAAGCCCCAGCCGGAATGAGGGTTGTGGCAGCGGGACCGGCAGCACGCAGA-GGGG
321 CCCGA--TCTAAGCCCCAACCGGAATGAGGGACCT-GCAACAGGACCGACAGCACGCAGAGGGGG
* * * * ** *
2478506 ATCAGGCCGATCCC-CTACTTACGCATTATGCCTCTTCGATCGGCTCAGCGCCTGCACGTTCGTT
383 ATCAGGCC-AACCCTCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCACACTCATT
*
2478570 TCATGG
447 TCATGA
*
2478576 GTTGACTTAGGCATA-TGAAGTTCATTCCCA-GTCTAAGC
1 GTTGACTTAGGCATACAG-AGTTCATT-CCATGTCTAAGC
2478614 ATACAGAGTT
Statistics
Matches: 405, Mismatches: 75, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
451 3 0.01
452 3 0.01
453 362 0.89
454 31 0.08
455 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (452 bp):
GTTGACTTAGGCATACAGAGTTCATTCCATGTCTAAGCCCCAGCCGGACAGAGGGTTGTGGTAGC
GAGACCGACAGCACGCAAAGGGGGACCGAGCCGATCCCCAGCTTACACATTATGCCTCTCCGGTC
GACTCAGCACCCGCACGCTCATTTCAGGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
GATCAGACCAGCAGCAGCACGCAGAGGGATACAGGCCAATCCTCAGCTTACGCATCCTGCCTCTC
CGGTCGGTTGAGCACCCACACACTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCGA
TCTAAGCCCCAACCGGAATGAGGGACCTGCAACAGGACCGACAGCACGCAGAGGGGGATCAGGCC
AACCCTCGACTTACGCATTATGCCTCTCCGACCGGCTCAGCGCCTGCACACTCATTTCATGA
Found at i:2478855 original size:45 final size:45
Alignment explanation
Indices: 2478785--2478983 Score: 183
Period size: 45 Copynumber: 4.4 Consensus size: 45
2478775 CCAACAAGGG
2478785 GCCGATGGTGGTCGAGGCAATCGCCCGCACCATG-GCCCAGT-GTGT
1 GCCGATGGTGGTCGAGGCAATCGCCCGCACCA-GCGCCCA-TCGTGT
* * * * * *
2478830 GTCGATGGTGTTCGATGCAACCGCCCGCACCAGCGGCCATCTTGT
1 GCCGATGGTGGTCGAGGCAATCGCCCGCACCAGCGCCCATCGTGT
* * * *
2478875 GCCGATGGTGGTCGAGGCAATCGCCCGCACCAAG-GGCTAGCATGT
1 GCCGATGGTGGTCGAGGCAATCGCCCGCACC-AGCGCCCATCGTGT
* * * * *
2478920 ACCGATGGT-GACGAGGCAA-CTGCCCGCACCAGAGCCCAGCTTGT
1 GCCGATGGTGGTCGAGGCAATC-GCCCGCACCAGCGCCCATCGTGT
*
2478964 GCCGATGGTGGTCAAGGCAA
1 GCCGATGGTGGTCGAGGCAA
2478984 GTGCCCGTAC
Statistics
Matches: 127, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
43 3 0.02
44 36 0.28
45 86 0.68
46 2 0.02
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
GCCGATGGTGGTCGAGGCAATCGCCCGCACCAGCGCCCATCGTGT
Found at i:2478983 original size:89 final size:90
Alignment explanation
Indices: 2478785--2479001 Score: 267
Period size: 89 Copynumber: 2.4 Consensus size: 90
2478775 CCAACAAGGG
* * ** ** * *
2478785 GCCGATGGTGGTCGAGGCAATCGCCCGCACCATGGCCCAGTGTGTGTCGATGGTGTTCGATGCAA
1 GCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCATGTACCGATGGTGTACGAGGCAA
* * *
2478850 CCGCCCGCACCAGCGGCCATCTTGT
66 CCGCCCGCACCAGAGCCCAGCTTGT
*
2478875 GCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCTAGCATGTACCGATGGTG-ACGAGGCAA
1 GCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCATGTACCGATGGTGTACGAGGCAA
*
2478939 CTGCCCGCACCAGAGCCCAGCTTGT
66 CCGCCCGCACCAGAGCCCAGCTTGT
* *
2478964 GCCGATGGTGGTCAAGGCAAGT-GCCCGTACCAAAGGGC
1 GCCGATGGTGGTCGAGGCAA-TCGCCCGCACC-AAGGGC
2479002 AGCCTGTGCC
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
89 55 0.50
90 55 0.50
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (90 bp):
GCCGATGGTGGTCGAGGCAATCGCCCGCACCAAGGGCCAGCATGTACCGATGGTGTACGAGGCAA
CCGCCCGCACCAGAGCCCAGCTTGT
Found at i:2479010 original size:45 final size:44
Alignment explanation
Indices: 2478785--2479023 Score: 178
Period size: 45 Copynumber: 5.3 Consensus size: 44
2478775 CCAACAAGGG
* * **
2478785 GCCGATGGTGGTCGAGGCAATCGCCCGCACC-ATGGCCCAGTGTGT
1 GCCGATGGTGGTCGAGGCAAT-GCCCGCACCAAAGG-GCAGCATGT
* * * * ** * * *
2478830 GTCGATGGTGTTCGATGCAACCGCCCGCACCAGCGGCCATCTTGT
1 GCCGATGGTGGTCGAGGCAA-TGCCCGCACCAAAGGGCAGCATGT
2478875 GCCGATGGTGGTCGAGGCAATCGCCCGCACC-AAGGGCTAGCATGT
1 GCCGATGGTGGTCGAGGCAAT-GCCCGCACCAAAGGGC-AGCATGT
* * * ** *
2478920 ACCGATGGT-GACGAGGCAACTGCCCGCACCAGAGCCCAGCTTGT
1 GCCGATGGTGGTCGAGGCAA-TGCCCGCACCAAAGGGCAGCATGT
* * *
2478964 GCCGATGGTGGTCAAGGCAAGTGCCCGTACCAAAGGGCAGCCTGT
1 GCCGATGGTGGTCGAGGCAA-TGCCCGCACCAAAGGGCAGCATGT
* *
2479009 GCCAATGATGGTCGA
1 GCCGATGGTGGTCGA
2479024 TGCATGTGCC
Statistics
Matches: 151, Mismatches: 36, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
44 35 0.23
45 114 0.75
46 2 0.01
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.17
Consensus pattern (44 bp):
GCCGATGGTGGTCGAGGCAATGCCCGCACCAAAGGGCAGCATGT
Found at i:2479954 original size:26 final size:26
Alignment explanation
Indices: 2479925--2479977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2479915 GTTGACTTAG
*
2479925 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
2479951 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
2479977 G
1 G
2479978 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:2480113 original size:196 final size:196
Alignment explanation
Indices: 2479755--2480148 Score: 459
Period size: 196 Copynumber: 2.0 Consensus size: 196
2479745 GTTGACCTAG
* * * * * * * *
2479755 GCATACGTAGTGCACTCCCAGTCTAAGATCAGATTGGACTGAGGGTTACGGTAGCAGGACCCGTA
1 GCATACGGAGTGCACTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAAGACCAGCA
* * ** **
2479820 ACAGGATCGGTAACACACAGAGGGGATCGGGTTGATCTTCAGCTTGTGCATCCTGCCTCTCTCGT
66 ACAAGATCGGTAACACACAGAGGGGACCGGGTTGATCCCCAGCTTGCACATCCTGCCTCTCTCGT
* * * * * *
2479885 CGGTTGAGCGCCCGCATGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCT
131 CGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCT
2479949 AA
195 AA
* * * *
2479951 GCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACTGCAGCAAGACCAGCA
1 GCATACGGAGTGCACTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAAGACCAGCA
* * * * * *
2480016 GCAAGATCGGTAGCACGCAGGGGGGACCTGGTTGATCCCCAGCTTGCACATTCTGCCTCTC-CGT
66 ACAAGATCGGTAACACACAGAGGGGACCGGGTTGATCCCCAGCTTGCACATCCTGCCTCTCTCGT
* * *
2480080 CCGGCTGAGCACCCACACGCTCGTTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCT
131 -CGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCT
2480145 AA
195 AA
2480147 GC
1 GC
2480149 CCCAGCCAGA
Statistics
Matches: 163, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
195 6 0.04
196 157 0.96
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (196 bp):
GCATACGGAGTGCACTCCCAATCTAAGATCAGATCGGACCGAGGGTTACGGCAGCAAGACCAGCA
ACAAGATCGGTAACACACAGAGGGGACCGGGTTGATCCCCAGCTTGCACATCCTGCCTCTCTCGT
CGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTA
A
Done.