Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 22 of 120
Found at i:2480809 original size:45 final size:44
Alignment explanation
Indices: 2480759--2480918 Score: 167
Period size: 45 Copynumber: 3.6 Consensus size: 44
2480749 CGGGGCTCGA
* *
2480759 CATGTGTCGATGATGGTCGAGGCAACCGCCCGCACCATGACCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GACCCAG
* * * * * ** *
2480804 CATGTGCCGATGGTGTTCGATGTAACTGCCCACACCAGGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GACCCAG
* *
2480849 CTTGTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGA-CCCAG
* *
2480894 CTTGTGCCGATGGCGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
2480919 GTGCCTGTAC
Statistics
Matches: 91, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 1 0.01
45 90 0.99
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.17
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGACCCAG
Found at i:2480945 original size:45 final size:45
Alignment explanation
Indices: 2480761--2480968 Score: 139
Period size: 45 Copynumber: 4.6 Consensus size: 45
2480751 GGGCTCGACA
* * ** * *
2480761 TGTGTCGATGATGGTCGAGGCAACCGCCCGCACC-ATGACCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAAGTGCCCGCACCAAAG-CCCAGCC
* * * * * ** * * *
2480806 TGTGCCGATGGTGTTCGATGTAACTGCCCACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAAGTGCCCGCACCAAAGCCCAGCC
* ** * *
2480851 TGTACCGATGGTGGTCGAGGCAACCGCCCGCACCAGAGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAAGTGCCCGCACCAAAGCCCAGCC
* * * **
2480896 TGTGCCGATGGCGGTCGAGGCAAGTGCCTGTACCAAAGGGCAGCC
1 TGTGCCGATGGTGGTCGAGGCAAGTGCCCGCACCAAAGCCCAGCC
* * *
2480941 TGTGCCGATGATGGTCGATGCATGTGCC
1 TGTGCCGATGGTGGTCGAGGCAAGTGCC
2480969 ATCAATATGT
Statistics
Matches: 127, Mismatches: 35, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
45 126 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAAGTGCCCGCACCAAAGCCCAGCC
Found at i:2480949 original size:90 final size:90
Alignment explanation
Indices: 2480761--2480958 Score: 229
Period size: 90 Copynumber: 2.2 Consensus size: 90
2480751 GGGCTCGACA
* * * *
2480761 TGTGTCGATGATGGTCGAGGCAACCGCCCGCACCATGACCCAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCATGACCCAGCATGTGCCGATGGCGGTCGAGG
* * * *
2480826 TAACTGCCCACACCAGGGGCCATCT
66 CAACTGCCCACACCAAGGGCCAGCC
* * *
2480851 TGTACCGATGGTGGTCGAGGCAACCGCCCGCACCA-GAGCCCAGCTTGTGCCGATGGCGGTCGAG
1 TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCATGA-CCCAGCATGTGCCGATGGCGGTCGAG
* ***
2480915 GCAAGTGCCTGTACCAAAGGG-CAGCC
65 GCAACTGCCCACACC-AAGGGCCAGCC
2480941 TGTGCCGATGATGGTCGA
1 TGTGCCGATGATGGTCGA
2480959 TGCATGTGCC
Statistics
Matches: 89, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
89 2 0.02
90 83 0.93
91 4 0.04
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCATGACCCAGCATGTGCCGATGGCGGTCGAGG
CAACTGCCCACACCAAGGGCCAGCC
Found at i:2482687 original size:45 final size:45
Alignment explanation
Indices: 2482486--2482688 Score: 147
Period size: 45 Copynumber: 4.5 Consensus size: 45
2482476 GGGCTCGGCA
* * * ** * *
2482486 TGTGCCGATGGTGGTCAAGCCAACCGCTCGTACCACA-GCCCAACA
1 TGTGCCGATGGTGGTCAAGGCAACCACCCACACCA-AGGCCCAGCT
* * * * * * * *
2482531 TGTGCCAATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAAGGCCCAGCT
* * * *
2482576 TGTGCTGATGGTGGTCAAGGCAATCACCCACACCAAGGGCCAGCA
1 TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAAGGCCCAGCT
* * * * ** *
2482621 TGTGTCGATGGTGATCGAGGCAACCGCCTGCACCGAGGCCCAGCT
1 TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAAGGCCCAGCT
*
2482666 TGTGCCGATGGCGGTCAAGGCAA
1 TGTGCCGATGGTGGTCAAGGCAA
2482689 GTGCCTGTAC
Statistics
Matches: 120, Mismatches: 37, Indels: 2
0.75 0.23 0.01
Matches are distributed among these distances:
45 120 1.00
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.17
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAAGGCCCAGCT
Found at i:2482695 original size:45 final size:44
Alignment explanation
Indices: 2482574--2482728 Score: 114
Period size: 45 Copynumber: 3.5 Consensus size: 44
2482564 CAGGGGCCAT
* * ** *
2482574 CTTGTGCTGATGGTGGTCAAGGCAATCACCCACACCAAGGGCCAG
1 CTTGTGCCGATGGTGGTCAAGGCAAT-GCCTGCACCAAGGCCCAG
* * * * * *
2482619 CATGTGTCGATGGTGATCGAGGCAACCGCCTGCACCGAGGCCCAG
1 CTTGTGCCGATGGTGGTCAAGGCAA-TGCCTGCACCAAGGCCCAG
* * **
2482664 CTTGTGCCGATGGCGGTCAAGGCAAGTGCCTGTACCAAAGG-GTAG
1 CTTGTGCCGATGGTGGTCAAGGCAA-TGCCTGCACC-AAGGCCCAG
* *
2482709 CCTGTGCCGATGATGGTCAA
1 CTTGTGCCGATGGTGGTCAA
2482729 TGCGTGTGCC
Statistics
Matches: 83, Mismatches: 25, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
45 80 0.96
46 3 0.04
ACGTcount: A:0.22, C:0.27, G:0.32, T:0.19
Consensus pattern (44 bp):
CTTGTGCCGATGGTGGTCAAGGCAATGCCTGCACCAAGGCCCAG
Found at i:2487601 original size:26 final size:26
Alignment explanation
Indices: 2487565--2487617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2487555 GTTGACTTAG
2487565 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2487591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2487617 G
1 G
2487618 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2487956 original size:26 final size:26
Alignment explanation
Indices: 2487920--2487970 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2487910 GTTGACTTAG
2487920 GCATACGGAGTTCATTCCCAGTCTAT
1 GCATACGGAGTTCATTCCCAGTCTAT
**
2487946 GCATACGGAGTTCATTTTCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
2487971 AGATTAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAT
Found at i:2489017 original size:158 final size:158
Alignment explanation
Indices: 2488804--2489098 Score: 448
Period size: 158 Copynumber: 1.9 Consensus size: 158
2488794 CAGCAGCACG
* * * * * * *
2488804 CAGAGGGGGATCGGGTCGATCCTCGGCTTACGTATCCTGCCTCTCTGATCGACTGAGCATCCGCA
1 CAGAGGCGGATCGGGTCGATCCTCGGCTTACGCATCATACCTCTCCGACCGACTGAGCACCCGCA
* *
2488869 CACTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTC-CTGGTCTAAGCCCCAATCAGATC
66 CACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCTC-GGTCTAAGCCCCAATCAGACC
2488933 GAGGGACCCGTAACGGGAACGACAGCATA
130 GAGGGACCCGTAACGGGAACGACAGCATA
* *
2488962 CAGAGGCGGATCGGGTCGATCCTCGGCTTGCGCATCATACCTCTCCGACCGACTGAGCGCCCGCA
1 CAGAGGCGGATCGGGTCGATCCTCGGCTTACGCATCATACCTCTCCGACCGACTGAGCACCCGCA
* * *
2489027 CACTCGTTTCGTGGTTTAACTTAGGCATACGGAGTTCATTCTCGGTCTAAGCCCCAATCAGACCG
66 CACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCTCGGTCTAAGCCCCAATCAGACCG
2489092 AGGGACC
131 AGGGACC
2489099 ATTAGCATGC
Statistics
Matches: 122, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
158 121 0.99
159 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.22
Consensus pattern (158 bp):
CAGAGGCGGATCGGGTCGATCCTCGGCTTACGCATCATACCTCTCCGACCGACTGAGCACCCGCA
CACTCGTTTCATGGGTTAACTTAGGCATACAGAGTTCATTCTCGGTCTAAGCCCCAATCAGACCG
AGGGACCCGTAACGGGAACGACAGCATA
Found at i:2489485 original size:45 final size:45
Alignment explanation
Indices: 2489372--2489529 Score: 174
Period size: 45 Copynumber: 3.5 Consensus size: 45
2489362 AGGCTCGACA
* **
2489372 TGTGTCGATGGTGGTCGAGACAACCGCCCGCACCATAGCCCAGCT
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* * * *
2489417 TGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCT
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* * * *
2489462 TGTGTCGATGGTGGTCAAGGCAACTGCTCGTACCAGGGCCC-GACT
1 TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAG-CT
* * *
2489507 TGTGCCAATGATGGTCGAGGCAA
1 TGTGTCGATGGTGGTCGAGGCAA
2489530 GTGCTCATAC
Statistics
Matches: 93, Mismatches: 19, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (45 bp):
TGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
Found at i:2493139 original size:159 final size:159
Alignment explanation
Indices: 2492850--2493141 Score: 408
Period size: 159 Copynumber: 1.8 Consensus size: 159
2492840 AGAATAGCAA
*
2492850 CAGGATCGATAGCACACAAGAGGGGACCGAGTCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAC
1 CAGGATCGATAGCACACAAGAGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
* * * * **
2492915 CAGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGGTTTAGGCATACAAAGTTCATTCCATGTCTA
66 CAGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTA
2492980 AGCCCCAGTCGGACCGAGGGTTGTGGCAG
131 AGCCCCAGTCGGACCGAGGGTTGTGGCAG
* * * * * *
2493009 CAGGATCGATAGTACGC-AGAGGGGGATCGGGTCGATCCCTGGCTTGTGCATTATGCCTCTCCGA
1 CAGGATCGATAGCACACAAGA-GGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGA
** *
2493073 CTGGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA-GTC
65 CCAGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATT-CCATGTC
2493137 TAAGC
129 TAAGC
2493142 ATACGGAGTT
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
158 3 0.03
159 109 0.95
160 3 0.03
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
CAGGATCGATAGCACACAAGAGGGGACCGAGTCGATCCCCGGCTTGCGCATTATGCCTCTCCGAC
CAGCTCAGCACCCGAACGCTCATTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCATGTCTA
AGCCCCAGTCGGACCGAGGGTTGTGGCAG
Found at i:2493151 original size:26 final size:26
Alignment explanation
Indices: 2493114--2493166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2493104 GTTGACTTAG
*
2493114 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2493140 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2493166 G
1 G
2493167 ATCGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2494458 original size:45 final size:45
Alignment explanation
Indices: 2494364--2494462 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 45
2494354 CCGATGGTGT
* ** * ** * *
2494364 TCGATGCAACCGCCCGCACCAGGGGCCATCTTATGCCGGTGGTGG
1 TCGAGGCAACCGCCCGCACCAGGACCCAGCTTATGCCAATGGCGA
* *
2494409 TCGAGGCAACCGCCCGTACCAGGACCCAGCTTGTGCCAATGGCGA
1 TCGAGGCAACCGCCCGCACCAGGACCCAGCTTATGCCAATGGCGA
2494454 TCGAGGCAA
1 TCGAGGCAA
2494463 GTGCCCGTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.15
Consensus pattern (45 bp):
TCGAGGCAACCGCCCGCACCAGGACCCAGCTTATGCCAATGGCGA
Found at i:2495748 original size:159 final size:158
Alignment explanation
Indices: 2495467--2495759 Score: 358
Period size: 159 Copynumber: 1.8 Consensus size: 158
2495457 AGACCAGACT
* *
2495467 GAGGGTTGTGATAGTAGGACCAGCAGCACGCAGGGGGGATCGAGCCGATCCTTGGCTTGCACATT
1 GAGGGTTGTGATAGTAGGACCAGCAGCACGCAGGGGGGATCGAGCCGATCCTCGGCTTACACATT
* * * * *
2495532 CTGCCTCTCCAGCCGACTGAGCGTCCGCACGCTCATTTTGTGATTTGGCTTAGGCATACGGAGTT
66 ATGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCATTTTGAGAGTTGACTTAGGCATACGGAGTT
2495597 CATTGCATGTCTAAGCCCCAATTGGACC
131 CATTGCATGTCTAAGCCCCAATTGGACC
* * ** *
2495625 GAGGGTTGTGGTAGTGGGACC-GACAGCACGTTGAGGGGGATCGAGCCGATCCTCGGCTTACGCA
1 GAGGGTTGTGATAGTAGGACCAG-CAGCACGCAG-GGGGGATCGAGCCGATCCTCGGCTTACACA
* * * ** * *
2495689 TTATGCCTCTTCGGTCTG-CTGAGCGCCCGCACGCTTGTTTTGAGGGTTGACTTTA-GCATATGG
64 TTATGCCTCTCCAG-CCGACTGAGCGCCCGCACGCTCATTTTGAGAGTTGAC-TTAGGCATACGG
2495752 AGTTCATT
127 AGTTCATT
2495760 CCCAGTCTAA
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
157 1 0.01
158 27 0.24
159 79 0.71
160 5 0.04
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (158 bp):
GAGGGTTGTGATAGTAGGACCAGCAGCACGCAGGGGGGATCGAGCCGATCCTCGGCTTACACATT
ATGCCTCTCCAGCCGACTGAGCGCCCGCACGCTCATTTTGAGAGTTGACTTAGGCATACGGAGTT
CATTGCATGTCTAAGCCCCAATTGGACC
Found at i:2495779 original size:26 final size:26
Alignment explanation
Indices: 2495743--2495796 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
2495733 GGTTGACTTT
* *
2495743 AGCATATGGAGTTCATTCCCAGTCTA
1 AGCATACGGAGTTCATTACCAGTCTA
2495769 AGCATACGGAGTTCATTACCAGTCTA
1 AGCATACGGAGTTCATTACCAGTCTA
2495795 AG
1 AG
2495797 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCATACGGAGTTCATTACCAGTCTA
Found at i:2496380 original size:90 final size:91
Alignment explanation
Indices: 2496243--2496454 Score: 223
Period size: 90 Copynumber: 2.4 Consensus size: 91
2496233 TCGACATGTA
* * * * * *
2496243 CCGATGGTGTTCGAGGCAACTGCCCACACC-ATGGCCCAGCATGTGCCGATGGTGTTCGATGTAA
1 CCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCCAGCATGTGCCGATAGTGATCGAGGTAA
** * * * *
2496307 TTGGC-CACACCAGGGGCCATCTTTTG
66 -CCGCTCACACCAAGGCCCAACTTGTG
* * *
2496333 CCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGTCGA-CATGTGCCGATAGTGATCGAGGTAA
1 CCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCCAGCATGTGCCGATAGTGATCGAGGTAA
*
2496397 CCGCTCGCACCAAGGCCCAACTTGTG
66 CCGCTCACACCAAGGCCCAACTTGTG
* * *
2496423 CCGATGGCGGTCGAGGCAAGTGCCCGTACCAA
1 CCGATGGTGGTCGAGGCAACTGCCCGCACCAA
2496455 AGGCAAATCC
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
89 2 0.02
90 94 0.93
91 5 0.05
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (91 bp):
CCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCCAGCATGTGCCGATAGTGATCGAGGTAA
CCGCTCACACCAAGGCCCAACTTGTG
Found at i:2496454 original size:45 final size:45
Alignment explanation
Indices: 2496236--2496454 Score: 177
Period size: 45 Copynumber: 4.9 Consensus size: 45
2496226 TCAGGGCTCG
* * * *
2496236 ACATGTACCGATGGTGTTCGAGGCAACTGCCCACACCATGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCA
* * * * * * * * *
2496281 GCATGTGCCGATGGTGTTCGATGTAATTGGCCACACCAGGGGCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCA
* * * * ** *
2496326 TCTTTTGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGTCG
1 ACATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCA
* * * * *
2496371 ACATGTGCCGATAGTGATCGAGGTAACCGCTCGCACCAAGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCA
* * * *
2496416 ACTTGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAA
1 ACATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAA
2496455 AGGCAAATCC
Statistics
Matches: 134, Mismatches: 40, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 134 1.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (45 bp):
ACATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGCCCA
Found at i:2496904 original size:26 final size:26
Alignment explanation
Indices: 2496874--2496926 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2496864 GCTGACTTAC
*
2496874 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
*
2496900 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATCCACAGTCTAA
2496926 G
1 G
2496927 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCACAGTCTAA
Found at i:2497420 original size:26 final size:26
Alignment explanation
Indices: 2497391--2497443 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2497381 GTTGACTTAG
* * *
2497391 GCATACGAAGTTGATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
2497417 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
2497443 G
1 G
2497444 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:2497530 original size:162 final size:162
Alignment explanation
Indices: 2496998--2497580 Score: 512
Period size: 162 Copynumber: 3.6 Consensus size: 162
2496988 GGATCGGGTT
* * * * * * * *
2496998 GATCCTCGGCTTACACATTCTACCTCTCCGACCTGCTCAGCGCCTGAACGCTCATTTCGTGGGTT
1 GATCCTCGGCTTGCGCATTATGCCTCTCCGACCTGCTCAGCGCCCGTACGCTCGTTTCATGGGTT
* * * * *
2497063 GACTTAGGCATACAGAGTTCATTCCCAGTCGAAGCATACAGAGTTGATTCTCAGTCTAAAATCGG
66 GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGG
*
2497128 ACCGATAGCAGCACGCAGAGGGGGACCAAGCC
131 ACCGGTAGCAGCACGCAGAGGGGGACCAAGCC
* * * * *
2497160 GATCCTCGGC-TGACGCATTTTGCCTCTCCGACCGGCTGAGCCCCCGTACACTCGTTTCATGGGT
1 GATCCTCGGCTTG-CGCATTATGCCTCTCCGACCTGCTCAGCGCCCGTACGCTCGTTTCATGGGT
* * * ** * ** *
2497224 CGGCTTAGGCATACAGAGTTCATT-CCATATCTAAGC---CCCAG-TCGGA-T-CGAGGGT-TG-
65 TGACTTAGGCATACAGAGTTCATTCCCA-GTCTAAGCATACAAAGTTC--ATTCCCAGTCTAAGA
* * * *
2497280 T-GGTAGCGGGATCGGCAGCACGTAGAGGGGGACCAAGTC
127 TCGG-A-CCGG-T-AGCAGCACGCAGAGGGGGACCAAGCC
* * * * * * *
2497319 GATCCCCAGCTTGTGCATTATGCCTTTTCGGCCTGCTCAGCGCCCGTACGCTCGATTT-GTGGGT
1 GATCCTCGGCTTGCGCATTATGCCTCTCCGACCTGCTCAGCGCCCGTACGCTCG-TTTCATGGGT
* *
2497383 TGACTTAGGCATAC-GAAGTTGATTCCTAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC
65 TGACTTAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATC
* * *
2497447 GGACCGGTAGCAGCATGCAGAGGGGGATCGAGCC
129 GGACCGGTAGCAGCACGCAGAGGGGGACCAAGCC
* * * *
2497481 GATCCTCGGCTTGCGCATCT-TGCCTTTCCGATC-GACTGAGCGCCCGTACGCTTGTTTCATGGG
1 GATCCTCGGCTTGCGCAT-TATGCCTCTCCGACCTG-CTCAGCGCCCGTACGCTCGTTTCATGGG
*
2497544 TTGACTTAGGCATACAGAGTTCATTCCCGGTCTAAGC
64 TTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
2497581 CCCAACCAGA
Statistics
Matches: 324, Mismatches: 72, Indels: 50
0.73 0.16 0.11
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 2 0.01
158 6 0.02
159 98 0.30
160 8 0.02
161 9 0.03
162 180 0.56
163 9 0.03
164 4 0.01
165 2 0.01
166 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (162 bp):
GATCCTCGGCTTGCGCATTATGCCTCTCCGACCTGCTCAGCGCCCGTACGCTCGTTTCATGGGTT
GACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGG
ACCGGTAGCAGCACGCAGAGGGGGACCAAGCC
Found at i:2497999 original size:45 final size:45
Alignment explanation
Indices: 2497880--2498032 Score: 132
Period size: 45 Copynumber: 3.4 Consensus size: 45
2497870 TGACATGTAA
** * ** * *
2497880 CGATGGTGGTCGAAACAACTGCCCGCACCACAG-CCCAGCATGTAC
1 CGATGGTGGTCGAGGCAACCGCCTACACCA-AGACCCAGCTTGTGC
* * * *
2497925 CGATGGTGTTCGATGCAACCGCCTGCACC-AGACACCATCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCTACACCAAGAC-CCAGCTTGTGC
*
2497970 CGATGGTGGTCGAGGCAACCG-CTCACACCAAGGCCCAGCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCT-ACACCAAGACCCAGCTTGTGC
* *
2498015 CAATGGTGGTTGAGGCAA
1 CGATGGTGGTCGAGGCAA
2498033 GTGCCCATAC
Statistics
Matches: 89, Mismatches: 15, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
45 81 0.91
46 3 0.03
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAACCGCCTACACCAAGACCCAGCTTGTGC
Found at i:2498514 original size:46 final size:46
Alignment explanation
Indices: 2498447--2498542 Score: 138
Period size: 46 Copynumber: 2.1 Consensus size: 46
2498437 ACTTTGAGAT
* * *
2498447 TTTGTTTGTGCATGCCAACAAAAAAAAAAGGATCACGTCTACCAAA
1 TTTGTTTATGCATGCCAACAAAAAAAAAAGCATCACATCTACCAAA
* * *
2498493 TTTGTTTATGCGTGCCAACAAAAATACAAGCATCACATCTACCAAA
1 TTTGTTTATGCATGCCAACAAAAAAAAAAGCATCACATCTACCAAA
2498539 TTTG
1 TTTG
2498543 GGGCCAAAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.27
Consensus pattern (46 bp):
TTTGTTTATGCATGCCAACAAAAAAAAAAGCATCACATCTACCAAA
Found at i:2499023 original size:26 final size:26
Alignment explanation
Indices: 2498987--2499039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2498977 GTTGACTTAG
2498987 GCATACGGAGTTAATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
* * *
2499013 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
2499039 G
1 G
2499040 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:2499330 original size:26 final size:26
Alignment explanation
Indices: 2499310--2499361 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2499300 GCCAGCTCAG
*
2499310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2499336 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2499362 AATGGGACTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2501558 original size:333 final size:333
Alignment explanation
Indices: 2500883--2501570 Score: 832
Period size: 333 Copynumber: 2.1 Consensus size: 333
2500873 CGTGGGTTGG
2500883 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCAGCGGGACT
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCAGCGGGACT
* * * *
2500948 GATAGCATGTAGAGGGGGATCGGACAGATCCCCGGCTTGAGCATTATGCCTCTCCGGTCGGCTCA
66 GACAGCATGTAGAGGGGGACCGGACAGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTCA
*
2501013 GTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATAC
131 GTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * *** * * *
2501078 AGAGTTCATTCTCAGTCTAAGATCGGATCGATAGTGGGATCGACAGCATCATGCAGAGGGGGACC
196 AGAGTTCATTCTCAGTCTAACATCGGACCGACAGCAAGATCGACAACAACACGCAGAGGGGGACC
* * * * *
2501143 GGATCGATCCCCGGCTTGTGCATTCTGCCTCTCCGACCGACTGAGTACCCGCACGCTCGTTTCAT
261 GGATCGATCCCCAGCTTGCGCATCCTACCTCTCCGACCGACTGAGTACCCGCACGCTCATTTCAT
**
2501208 GAGTTGGC
326 GAGTTAAC
* * * * * *
2501216 TTTGGCATACGGAGTTCATTCCATGTCTAAGCGCTAGCC-AGACTGAGGGTTGTGGTAGCGGGA-
1 TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ACCGAGAGTTGTGGCAGCGGGAC
* * * *
2501279 TAGACAGCATGCT-G-GGGGGCACCGGGCCGATCTCCAGCTT-ATGCATTATGCCTCTCTGATCG
65 T-GACAGCATG-TAGAGGGGG-ACCGGACAGATCCCCAGCTTGA-GCATTATGCCTCTCCGATCG
* * * *
2501341 GCTCAGTGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
126 GCTCAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
2501406 TATACGGAGTTCATTCTCAGTCTAACATCGGACCGACAGCAAGATCGACAACAACACGTAGAGGG
191 CATACAGAGTTCATTCTCAGTCTAACATCGGACCGACAGCAAGATCGACAACAACACGCAGAGGG
* * * * * * *
2501471 GGACCGGGTCGATCCTCAGCTTGCGCATCCTACCTCTCTGGCC-AGCTGAGTGCCTGCACGTTCA
256 GGACCGGATCGATCCCCAGCTTGCGCATCCTACCTCTCCGACCGA-CTGAGTACCCGCACGCTCA
*
2501535 TTTCTTG-GATTAAC
320 TTTCATGAG-TTAAC
* *
2501549 TTAGGCATACGTAGTGCATTCC
1 TTAGGCATACGGAGTTCATTCC
2501571 CGATCTCGAC
Statistics
Matches: 299, Mismatches: 49, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
332 10 0.03
333 288 0.96
334 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (333 bp):
TTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAACCGAGAGTTGTGGCAGCGGGACT
GACAGCATGTAGAGGGGGACCGGACAGATCCCCAGCTTGAGCATTATGCCTCTCCGATCGGCTCA
GTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
AGAGTTCATTCTCAGTCTAACATCGGACCGACAGCAAGATCGACAACAACACGCAGAGGGGGACC
GGATCGATCCCCAGCTTGCGCATCCTACCTCTCCGACCGACTGAGTACCCGCACGCTCATTTCAT
GAGTTAAC
Found at i:2502389 original size:46 final size:46
Alignment explanation
Indices: 2502322--2502416 Score: 163
Period size: 46 Copynumber: 2.1 Consensus size: 46
2502312 ACTTCGAGTT
2502322 TTTGTTTATGCGTGCCAACAAAAAAACAAGGATCACGTCTACCAAA
1 TTTGTTTATGCGTGCCAACAAAAAAACAAGGATCACGTCTACCAAA
* * *
2502368 TTTGTTTTTGCGTGCCAACAAAAATACAAGGATCATGTCTACCAAA
1 TTTGTTTATGCGTGCCAACAAAAAAACAAGGATCACGTCTACCAAA
2502414 TTT
1 TTT
2502417 TGGGCCAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (46 bp):
TTTGTTTATGCGTGCCAACAAAAAAACAAGGATCACGTCTACCAAA
Found at i:2503249 original size:26 final size:26
Alignment explanation
Indices: 2503219--2503271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2503209 GTTGACTTAG
*
2503219 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
2503245 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2503271 G
1 G
2503272 ATCTGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2505259 original size:26 final size:26
Alignment explanation
Indices: 2505220--2505272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2505210 GTTGACTTAG
* *
2505220 GCATAAAGAGTTCATTCCCAGTCTAA
1 GCATAAAGAATTCATTCCCAATCTAA
*
2505246 GCATACAGAATTCATTCCCAATCTAA
1 GCATAAAGAATTCATTCCCAATCTAA
2505272 G
1 G
2505273 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (26 bp):
GCATAAAGAATTCATTCCCAATCTAA
Found at i:2507222 original size:26 final size:26
Alignment explanation
Indices: 2507189--2507244 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
2507179 TGGGTTGACT
2507189 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
2507215 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
2507241 TAAG
1 TAAG
2507245 ATCAGACCGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:2507747 original size:45 final size:45
Alignment explanation
Indices: 2507696--2507898 Score: 158
Period size: 45 Copynumber: 4.5 Consensus size: 45
2507686 CCGGGGCTCG
* * * *
2507696 GCATGTGCCGATGGTGGTCGAGGCAATTGCCCACACCACGTCCCA
1 GCATGTGCCGATGGTGATCGAGGCAATCGCCCACACCAGGGCCCA
* * * * *
2507741 GCATGTGCCGATGGTGTTCGATGCAAACGCCCGCACCAGGGGCCA
1 GCATGTGCCGATGGTGATCGAGGCAATCGCCCACACCAGGGCCCA
* * ** * * * *
2507786 TCTTGTGCCGATATTGGTCGAGGCAATCACTCGCACCAAGGG-CCA
1 GCATGTGCCGATGGTGATCGAGGCAATCGCCCACACC-AGGGCCCA
** * *
2507831 GCATGTGTTGATGGCGATCGAGGCAA-CTGCCTACACCAGGGCCCA
1 GCATGTGCCGATGGTGATCGAGGCAATC-GCCCACACCAGGGCCCA
* * *
2507876 GCTTATGCCGATGGCGATCGAGG
1 GCATGTGCCGATGGTGATCGAGG
2507899 TAAGTGCTCG
Statistics
Matches: 122, Mismatches: 33, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
44 5 0.04
45 113 0.93
46 4 0.03
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGATCGAGGCAATCGCCCACACCAGGGCCCA
Found at i:2508897 original size:26 final size:26
Alignment explanation
Indices: 2508845--2508897 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2508835 GTTGACTTAG
*
2508845 GCATACGAAGTTCATCCCTAGTCTAA
1 GCATACGAAGTTCATCCCTAGACTAA
* *
2508871 GCATAC-AGAGTTCATTCCTAGAGTAA
1 GCATACGA-AGTTCATCCCTAGACTAA
2508897 G
1 G
2508898 ATCGGATCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGACTAA
Found at i:2509228 original size:26 final size:26
Alignment explanation
Indices: 2509199--2509251 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2509189 GTTGACTTGG
*
2509199 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2509225 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2509251 G
1 G
2509252 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2509773 original size:138 final size:137
Alignment explanation
Indices: 2509524--2509780 Score: 381
Period size: 138 Copynumber: 1.9 Consensus size: 137
2509514 TCATGGGTTG
*
2509524 ACTTAGGCATACATAGTGCATTCCCGATCTCAACCAACCAAGGGCCAGAGGCTACCACCGGTGTT
1 ACTTAGGCATACATAGTGCATTCCCGATCTCAACCAACCAAGGGCCAGAGGCTACCACCGATGTT
* ** *
2509589 TGGGGCAACAATCGAGGGGGACCAACAGTGGGATCCTTGGTCGGCTCATGCATCTCACCCCTAGC
66 TGGGGCAACAACCGAGGGGGACCAACAGCAGGATCCTTGGTCGGCTCACGCATCTCACCCCTAGC
2509654 AGTCGGT
131 AGTCGGT
* * * *
2509661 ACTTAGGCATACATAGTGCATTCGCGGTTCTCGACCAACCAAGGGCCAGAGGCTATCGA-CGATG
1 ACTTAGGCATACATAGTGCATTC-CCGATCTCAACCAACCAAGGGCCAGAGGCTA-CCACCGATG
** *
2509725 TTTGGGGCAACAACCGAGGGGGACCAGTAGCAGGATCCTTGGTTGGCTCACGCATC
64 TTTGGGGCAACAACCGAGGGGGACCAACAGCAGGATCCTTGGTCGGCTCACGCATC
2509781 CTAACCCCAG
Statistics
Matches: 106, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
137 23 0.22
138 81 0.76
139 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (137 bp):
ACTTAGGCATACATAGTGCATTCCCGATCTCAACCAACCAAGGGCCAGAGGCTACCACCGATGTT
TGGGGCAACAACCGAGGGGGACCAACAGCAGGATCCTTGGTCGGCTCACGCATCTCACCCCTAGC
AGTCGGT
Found at i:2510026 original size:45 final size:45
Alignment explanation
Indices: 2509849--2510044 Score: 164
Period size: 45 Copynumber: 4.4 Consensus size: 45
2509839 GCATTTATCG
* * * * * *
2509849 ATGGTGGTCGAGGCAACCGCCCGTACCACGACCCAACATT-TGCCG
1 ATGGTGATCGAGGCAACCGCCCGCACCACGGCCTAGC-TTGTGCCA
* * * * *
2509894 ATGGTGTTCGATGCAACCGCCCGCACCAGGGGCC-ATCTTGTGCCG
1 ATGGTGATCGAGGCAACCGCCCGCACCA-CGGCCTAGCTTGTGCCA
* * * * *
2509939 ATGGTGGTCGAGGCAATCGCCCGCACCAACGG-TTGGCATGTGCCA
1 ATGGTGATCGAGGCAACCGCCCGCACC-ACGGCCTAGCTTGTGCCA
* *
2509984 ATGGTGATCGAGGCAACCGCCCGCACTAGGGCCTAGCTTGTGCCA
1 ATGGTGATCGAGGCAACCGCCCGCACCACGGCCTAGCTTGTGCCA
**
2510029 ATGGCAATCGAGGCAA
1 ATGGTGATCGAGGCAA
2510045 GTGCCCGTAC
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
44 5 0.04
45 113 0.93
46 4 0.03
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (45 bp):
ATGGTGATCGAGGCAACCGCCCGCACCACGGCCTAGCTTGTGCCA
Found at i:2510040 original size:90 final size:90
Alignment explanation
Indices: 2509889--2510057 Score: 216
Period size: 90 Copynumber: 1.9 Consensus size: 90
2509879 ACCCAACATT
* * * * * ***
2509889 TGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGGTCGAGGCA
1 TGCCAATGGTGATCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCAATGGCAATCGAGGCA
2509954 A-TCGCCCGCACCAACGGTTGGCATG
66 AGT-GCCCGCACCAACGGTTGGCATG
*
2509979 TGCCAATGGTGATCGAGGCAACCGCCCGCACTA-GGGCCTAGCTTGTGCCAATGGCAATCGAGGC
1 TGCCAATGGTGATCGAGGCAACCGCCCGCACCAGGGGCC-AGCTTGTGCCAATGGCAATCGAGGC
*
2510043 AAGTGCCCGTACCAA
65 AAGTGCCCGCACCAA
2510058 ATGGCAGCCT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
89 5 0.07
90 61 0.91
91 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (90 bp):
TGCCAATGGTGATCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTGCCAATGGCAATCGAGGCA
AGTGCCCGCACCAACGGTTGGCATG
Found at i:2511389 original size:26 final size:26
Alignment explanation
Indices: 2511339--2511391 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2511329 GTTGACTTAG
**
2511339 GCATACAGAGTTCATTCCCTGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
2511365 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2511391 G
1 G
2511392 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2513143 original size:45 final size:45
Alignment explanation
Indices: 2513049--2513201 Score: 144
Period size: 45 Copynumber: 3.4 Consensus size: 45
2513039 CCTATACCAT
* * * * * *
2513049 GGCCTAGCATGTGCCGATGGTGTTTGATGCAACCACCTGCACTAGG
1 GGCC-AGCTTGTGCCGATGGTGATTGAGGCAACCACCCGCACCAAG
* * * *
2513095 GGCCATCTTGTGCCGATGGTGGTTGAGGCAATCGCCCGCACCAAG
1 GGCCAGCTTGTGCCGATGGTGATTGAGGCAACCACCCGCACCAAG
* * ** **
2513140 GGCCGGCATGTGCCGATGGTGATCAAGGCAACCACCCTTACCAAG
1 GGCCAGCTTGTGCCGATGGTGATTGAGGCAACCACCCGCACCAAG
*
2513185 GCCCAGCTTGTGCCGAT
1 GGCCAGCTTGTGCCGAT
2513202 AGCGGTCAAG
Statistics
Matches: 85, Mismatches: 22, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
45 81 0.95
46 4 0.05
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
GGCCAGCTTGTGCCGATGGTGATTGAGGCAACCACCCGCACCAAG
Found at i:2515265 original size:26 final size:26
Alignment explanation
Indices: 2515220--2515272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2515210 GTTGACTTAG
*
2515220 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTACATCCCCAGTCTAA
* *
2515246 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGAAGTACATCCCCAGTCTAA
2515272 G
1 G
2515273 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGAAGTACATCCCCAGTCTAA
Found at i:2515612 original size:26 final size:26
Alignment explanation
Indices: 2515576--2515628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2515566 GTTGACTTAG
2515576 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2515602 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2515628 G
1 G
2515629 ATCGGATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2516219 original size:26 final size:26
Alignment explanation
Indices: 2516169--2516221 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2516159 GTTGACTTAG
*
2516169 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAATCTAA
2516195 GCATACAGAGTTCATTCCC-AATCTAA
1 GCATACAGAGTTCA-TCCCTAATCTAA
2516221 G
1 G
2516222 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAATCTAA
Found at i:2516513 original size:26 final size:26
Alignment explanation
Indices: 2516477--2516529 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2516467 GTTGACTTAG
*
2516477 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2516503 GCATATGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2516529 G
1 G
2516530 GTCGAACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2517129 original size:90 final size:90
Alignment explanation
Indices: 2516975--2517173 Score: 231
Period size: 90 Copynumber: 2.2 Consensus size: 90
2516965 TTGACATATG
* * * * *
2516975 CCGATGGTGGTTGACGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCAAC
1 CCGATGGTGGTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAAC
* *
2517040 CGCCCGCACTAGGGGCC-ATCTTGTA
66 CGCCCGCACCA-GGGCCTAGCTTGTA
* **
2517065 CCGATGGTGGTCGAGGCAATCGCCAGCACCAAGGGTCAGCATGTGCCGATGGTGATT-GAGGCAA
1 CCGATGGTGGTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCCGATGGTG-TTCGAGGCAA
* * *
2517129 CCGTCTGCACCAGGGCCTAGCTTGTG
65 CCGCCCGCACCAGGGCCTAGCTTGTA
* *
2517155 CCAATGGCGGTCGAGGCAA
1 CCGATGGTGGTCGAGGCAA
2517174 GTGCCCGTAC
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
89 5 0.05
90 85 0.92
91 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.18
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAACCGCCAGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAGGCAAC
CGCCCGCACCAGGGCCTAGCTTGTA
Found at i:2517171 original size:45 final size:44
Alignment explanation
Indices: 2516973--2517173 Score: 195
Period size: 45 Copynumber: 4.5 Consensus size: 44
2516963 GCTTGACATA
* * *
2516973 TGCCGATGGTGGTTGACGCAACCGCCCGCACCACGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCAGCATG
* * * * *
2517018 TGCCGATGGTGTTCGATGCAACCGCCCGCACTAGGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCAGCATG
* * * *
2517063 TACCGATGGTGGTCGAGGCAATCGCCAGCACCAAGGGTCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AGGGCCAGCATG
* * * * *
2517108 TGCCGATGGTGATTGAGGCAACCGTCTGCACCAGGGCCTAGCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC-AGCATG
* *
2517153 TGCCAATGGCGGTCGAGGCAA
1 TGCCGATGGTGGTCGAGGCAA
2517174 GTGCCCGTAC
Statistics
Matches: 125, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
44 5 0.04
45 119 0.95
46 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (44 bp):
TGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCAGCATG
Found at i:2517186 original size:90 final size:91
Alignment explanation
Indices: 2517011--2517205 Score: 220
Period size: 90 Copynumber: 2.2 Consensus size: 91
2517001 CACCACGGCC
* * * * *
2517011 CAGCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACTAGGGGCCATCTTGTACCGATGGTGGT
1 CAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTACCAATGGCGGT
2517076 CGAGGCAATCGCCAGCACC-AAGGGT
66 CGAGGCAATCGCCAGCACCAAAGGGT
* * *
2517101 CAGCATGTGCCGATGGTGATT-GAGGCAACCGTCTGCACCA-GGGCCTAGCTTGTGCCAATGGCG
1 CAGCATGTGCCGATGGTG-TTCGAGGCAACCGCCCGCACCAGGGGCC-AGCTTGTACCAATGGCG
* *
2517164 GTCGAGGCAAGT-GCCCGTACCAAAGGGT
64 GTCGAGGCAA-TCGCCAGCACCAAAGGGT
* *
2517192 -AGCCTATGCCGATG
1 CAGCATGTGCCGATG
2517206 ATGGTCGATG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
89 5 0.06
90 75 0.84
91 9 0.10
ACGTcount: A:0.21, C:0.28, G:0.33, T:0.19
Consensus pattern (91 bp):
CAGCATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAGGGGCCAGCTTGTACCAATGGCGGT
CGAGGCAATCGCCAGCACCAAAGGGT
Found at i:2519061 original size:45 final size:45
Alignment explanation
Indices: 2518964--2519123 Score: 167
Period size: 45 Copynumber: 3.6 Consensus size: 45
2518954 TCGGCATGTG
* * * * * * *
2518964 CCGATGGTGGTTGAGGCAACCGCCCGCACCACGGCCCAGCATGTG
1 CCGATGGTGGTCGAGGCAACTGCCCACACTAGGGCCCAGCTTGTA
* * * * * *
2519009 GCAATGGTGTTCGATGCAACTGCCCACACTAGGGGCCATCTTGTA
1 CCGATGGTGGTCGAGGCAACTGCCCACACTAGGGCCCAGCTTGTA
* *
2519054 CCGATGGTGGTCGAGGCAACCGCCCACACTAGGGCCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACTGCCCACACTAGGGCCCAGCTTGTA
* *
2519099 CCGATGGCGGTCGAGGCAAGTGCCC
1 CCGATGGTGGTCGAGGCAACTGCCC
2519124 GTACCAAAGG
Statistics
Matches: 91, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 91 1.00
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.17
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACTGCCCACACTAGGGCCCAGCTTGTA
Found at i:2519148 original size:90 final size:90
Alignment explanation
Indices: 2518961--2519157 Score: 200
Period size: 90 Copynumber: 2.2 Consensus size: 90
2518951 GGCTCGGCAT
* * * * * *
2518961 GTGCCGATGGTGGTTGAGGCAACCGCCCGCACCACGGCCCAGCATGTGGCAATGGTGTTCGATGC
1 GTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCAATGGCGGTCGAGGC
* * * **
2519026 AACTGCCCACACTAGGGGCCATCTT
66 AACTGCCCACACAAAGGGCCAGCCA
* * * * *
2519051 GTACCGATGGTGGTCGAGGCAACCGCCCACACTAGGGCCCAGCTTGTGCCGATGGCGGTCGAGGC
1 GTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCAATGGCGGTCGAGGC
*
2519116 AAGTGCCCGTAC-CAAAGGG-CAGCCA
66 AACTGCCC--ACACAAAGGGCCAGCCA
*
2519141 GTGCCGATGATGGTCGA
1 GTGCCGATGGTGGTCGA
2519158 TGTATTTACC
Statistics
Matches: 86, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
90 79 0.92
91 5 0.06
92 2 0.02
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.17
Consensus pattern (90 bp):
GTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCAATGGCGGTCGAGGC
AACTGCCCACACAAAGGGCCAGCCA
Found at i:2520096 original size:26 final size:26
Alignment explanation
Indices: 2520060--2520112 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2520050 GTTGACTTAG
* *
2520060 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
2520086 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
2520112 G
1 G
2520113 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:2520446 original size:26 final size:26
Alignment explanation
Indices: 2520415--2520467 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2520405 GTTGACTTAG
*
2520415 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
2520441 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2520467 G
1 G
2520468 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2520941 original size:26 final size:26
Alignment explanation
Indices: 2520905--2520957 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2520895 GTTGACTTAG
* *
2520905 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
2520931 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
2520957 G
1 G
2520958 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:2521290 original size:26 final size:26
Alignment explanation
Indices: 2521260--2521312 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2521250 GTTGACTTAG
*
2521260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2521286 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2521312 G
1 G
2521313 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2521445 original size:845 final size:833
Alignment explanation
Indices: 2519856--2521580 Score: 2982
Period size: 845 Copynumber: 2.1 Consensus size: 833
2519846 AGGCCGGTTA
* * * * * *
2519856 AGTGCCCGTACGCTCATTTCGTGGGTTTACTTCGGCATACGTAGTGCGCTCCCAGTCTAAGATTG
1 AGTGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGTAGTGCGCTCCCAGTCTAAGATTG
2519921 GACCAGATCGAGGGTTGCAGTAGCAGGACACGTAGCAGGATCGACAGTAAGCAGAGGGGATCGGG
66 GACCAGATCGAGGGTTGCAGTAGCAGGACACGTAGCAGGATCGACAGTAAGCAGAGGGGATCGGG
2519986 TCGATCCCCTACTTGCGCATCCTACCTCTCTGGCCGGTTGAGCGCCCACACGCTCATTTTGTGGG
131 TCGATCCCCTACTTGCGCATCCTACCTCTCTGGCCGGTTGAGCGCCCACACGCTCATTTTGTGGG
2520051 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC
196 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC
*
2520116 GAACCGAACCGATGGTTGTGGCAACAGGACCAGCAGCAGGATCGATAGAATGCAGGGGGGACCGG
261 GAACCGAACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGATCGATAGAATGCAGGGGGGACCGG
*
2520181 ACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCCGTCGCACGTTCATTTCGTGG
326 ACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCCGCCGCACGTTCATTTCGTGG
*
2520246 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGATCGAGGGTTGTGGCAAT
391 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGATCGAGGGTTATGGCAAT
* * **
2520311 GGGACCAACAGCACACAAAGTGGGACCGAGCCGATCCCCGGCTTGGGCATTATGCCTCTTTGGCC
456 AGGACCAACAGCACACAAAGAGGGACCGAGCCGATCCCCGGCTTGGGCATTATGCCTCTCCGGCC
* * * * *
2520376 TGCTCAATGCTCGCACGCTCGTTTCATTGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
521 TACTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
2520441 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTGATAGCAGTATGCAGAGGGGGACCGGGTCG
586 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGATAGCAGTATGCAGAGGGGGACCGAGTCG
* * **
2520506 ATCCTCGGCTTACGCATCCTACCTCTTCGGCCAACTAAGCGCTCGCATGCTCGTTTCGTGGGTTG
651 ATCCTCGGCTTACGCATCCTACCTCTCCGGCCAACTAAGCCCTCGCACACTCGTTTCGTGGGTTG
*
2520571 AATTAGGCATACAGAGTTTATTCCCGATCTAAGTCCCAACCGGACCGAGGGACCTACAGCGGGAT
716 AATTAGGCATACAGAGTTCATTCCCGATCTAAGTCCCAACCGGACCGAGGGACCTACAGC---A-
2520636 CGATAGCACACAGAGAGGGACTGAGTCGATCCTCGGCTTACGCATTCGGGCTCTCCAGTGGGCTG
777 C----G----CAGAGAGGGACTGAGTCGATCCTCGGCTTACGCATTCGGGCTCTCCAGTGGGCTG
*
2520701 AGTGCCCGCACACTCGTTTCATGGGTTGACATAGGCATACGTAGTGCGCTCCCAGTCTAAGATTG
1 AGTGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGTAGTGCGCTCCCAGTCTAAGATTG
2520766 GACCAGATCGAGGGTTGCAGTAGCAGGACACGTAGCAGGATCGACAGTAAGCAGAGGGGATCGGG
66 GACCAGATCGAGGGTTGCAGTAGCAGGACACGTAGCAGGATCGACAGTAAGCAGAGGGGATCGGG
*
2520831 TCGATCCCCTACTTGCGCATCCTACCTCTCTGGCCGGTTGAGCGCCCACACGCTTATTTTGTGGG
131 TCGATCCCCTACTTGCGCATCCTACCTCTCTGGCCGGTTGAGCGCCCACACGCTCATTTTGTGGG
2520896 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC
196 TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC
* * *
2520961 GGACCGAACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGATCGATAGCATGCAGGGGGGATCGG
261 GAACCGAACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGATCGATAGAATGCAGGGGGGACCGG
*
2521026 ACCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCCGCCGCACGTTCATTTCGTGG
326 ACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCCGCCGCACGTTCATTTCGTGG
2521091 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGATCGAGGGTTATGGCAAT
391 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGATCGAGGGTTATGGCAAT
*
2521156 AGGACCAACAGCACACAGAGAGGGACCGAGCCGATCCCCGGCTTGGGCATTATGCCTCTCCGGCC
456 AGGACCAACAGCACACAAAGAGGGACCGAGCCGATCCCCGGCTTGGGCATTATGCCTCTCCGGCC
*
2521221 TACTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
521 TACTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
2521286 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGATAGCAGTATGCAGAGGGGGACCGAGTCG
586 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGATAGCAGTATGCAGAGGGGGACCGAGTCG
* *
2521351 ATCCTCGGCTTGCGCATCCTACCTCTCCGGCCAACTGAGCCCTCGCACACTCGTTTCGTGGGTTG
651 ATCCTCGGCTTACGCATCCTACCTCTCCGGCCAACTAAGCCCTCGCACACTCGTTTCGTGGGTTG
*
2521416 AATTAGGCATACAGAGTTCATTCCCGATCTAAGTCCCAATCGGACCGAGGGACCTACAGCACGCA
716 AATTAGGCATACAGAGTTCATTCCCGATCTAAGTCCCAACCGGACCGAGGGACCTACAGCACGCA
* *
2521481 GAGGGGGACTGAGTCGATCCTCGGCTTATGCATTCGGGCTCTCCAGTGGGCTG
781 GAGAGGGACTGAGTCGATCCTCGGCTTACGCATTCGGGCTCTCCAGTGGGCTG
* *
2521534 AGTGCCCACACGCTCGTTTCATGGGTTGACATAGGCATACATAGTGC
1 AGTGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGTAGTGC
2521581 ATTTTTGGTC
Statistics
Matches: 839, Mismatches: 41, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
833 97 0.12
837 1 0.00
841 1 0.00
842 1 0.00
845 739 0.88
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (833 bp):
AGTGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGTAGTGCGCTCCCAGTCTAAGATTG
GACCAGATCGAGGGTTGCAGTAGCAGGACACGTAGCAGGATCGACAGTAAGCAGAGGGGATCGGG
TCGATCCCCTACTTGCGCATCCTACCTCTCTGGCCGGTTGAGCGCCCACACGCTCATTTTGTGGG
TTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATC
GAACCGAACCGAGGGTTGTGGCAACAGGACCAGCAGCAGGATCGATAGAATGCAGGGGGGACCGG
ACCGATCCCTAGCTTACGCATTCTGCCTCTCCGGCCAGCTGAGCCGCCGCACGTTCATTTCGTGG
GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCGGATCGAGGGTTATGGCAAT
AGGACCAACAGCACACAAAGAGGGACCGAGCCGATCCCCGGCTTGGGCATTATGCCTCTCCGGCC
TACTCAACGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGATAGCAGTATGCAGAGGGGGACCGAGTCG
ATCCTCGGCTTACGCATCCTACCTCTCCGGCCAACTAAGCCCTCGCACACTCGTTTCGTGGGTTG
AATTAGGCATACAGAGTTCATTCCCGATCTAAGTCCCAACCGGACCGAGGGACCTACAGCACGCA
GAGAGGGACTGAGTCGATCCTCGGCTTACGCATTCGGGCTCTCCAGTGGGCTG
Found at i:2522929 original size:26 final size:26
Alignment explanation
Indices: 2522881--2522933 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2522871 GTTGACTTAG
* *
2522881 GCATAGGGAGTTCATCCTCAGTCTAA
1 GCATACGGAGTTCATCCTAAGTCTAA
2522907 GCATACGGAGTTCATTCC-AAGTCTAA
1 GCATACGGAGTTCA-TCCTAAGTCTAA
2522933 G
1 G
2522934 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCTAAGTCTAA
Found at i:2523272 original size:26 final size:26
Alignment explanation
Indices: 2523236--2523288 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2523226 GTTGACTTAG
* *
2523236 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2523262 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2523288 G
1 G
2523289 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2531517 original size:45 final size:45
Alignment explanation
Indices: 2531440--2531612 Score: 184
Period size: 45 Copynumber: 3.8 Consensus size: 45
2531430 TCGGGGCTAG
* ** *
2531440 GCATATGCCGATGGTGGTCGAGAAAACTGCCCGCACCACGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCA
* * * *
2531485 GCATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCA
* * * * * *
2531530 TCTTCTGCCGATGGTGGTCAAGGCAACTGCCCACACCAGGGCCTA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCA
* * * *
2531575 GCTTGTGCCAATGGTGGTCGAGGCAAGTGCCCGTACCA
1 GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCA
2531613 AAGGGCAACC
Statistics
Matches: 103, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 103 1.00
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAGGGCCCA
Found at i:2531629 original size:90 final size:90
Alignment explanation
Indices: 2531445--2531638 Score: 210
Period size: 90 Copynumber: 2.2 Consensus size: 90
2531435 GCTAGGCATA
* * * * *
2531445 TGCCGATGGTGGTCGAGAAAACTGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATGCA
1 TGCCGATGGTGGTCAAGAAAACTGCCCACACCACGGCCCAGCATGTGCCAATGGTGGTCGAGGCA
* * *
2531510 ACCGCCCGCACCAGGGGCCATCTTC
66 ACCGCCCGCACCAAGGGCCAACCTC
** * * *
2531535 TGCCGATGGTGGTCAAGGCAACTGCCCACACCAGGGCCTAGCTTGTGCCAATGGTGGTCGAGGCA
1 TGCCGATGGTGGTCAAGAAAACTGCCCACACCACGGCCCAGCATGTGCCAATGGTGGTCGAGGCA
** * *
2531600 AGTGCCCGTACCAAAGGG-CAACCTG
66 ACCGCCCGCACC-AAGGGCCAACCTC
*
2531625 TGCCGATGATGGTC
1 TGCCGATGGTGGTC
2531639 GATGCATGTG
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 81 0.95
91 4 0.05
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (90 bp):
TGCCGATGGTGGTCAAGAAAACTGCCCACACCACGGCCCAGCATGTGCCAATGGTGGTCGAGGCA
ACCGCCCGCACCAAGGGCCAACCTC
Found at i:2532991 original size:45 final size:45
Alignment explanation
Indices: 2532920--2533120 Score: 208
Period size: 45 Copynumber: 4.5 Consensus size: 45
2532910 TCAAGGCTTG
* *
2532920 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * *
2532965 GCATGTACCGATGGTGTTCGACGCAACCGCCCGCACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * *
2533010 TCTTGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * ** **
2533055 GCTTGTGTCGATGGCAGTCGAGGCAAGTGCCCGCACCAAAGGG--CA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC--AGGGCCCA
* *
2533100 GCCTGTGCCGATGATGGTCGA
1 GCATGTGCCGATGGTGGTCGA
2533121 TGCATGTGCC
Statistics
Matches: 130, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
45 126 0.97
47 4 0.03
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.16
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
Found at i:2533087 original size:90 final size:90
Alignment explanation
Indices: 2532923--2533120 Score: 229
Period size: 90 Copynumber: 2.2 Consensus size: 90
2532913 AGGCTTGGCA
*
2532923 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTACCGATGGTGTTCGACG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTACCGATGGAGTTCGACG
2532988 CAACCGCCCGCACCAGGGGCCATCT
66 CAACCGCCCGCACCAGGGGCCATCT
* * * * * ** *
2533013 TGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCCAGCTTGTGTCGATGGCAG-TCGAG
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTACCGATGG-AGTTCGAC
** * * *
2533077 GCAAGTGCCCGCACCAAAGGG-CAGCC
65 GCAACCGCCCGCACC-AGGGGCCATCT
*
2533103 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2533121 TGCATGTGCC
Statistics
Matches: 90, Mismatches: 16, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
90 85 0.94
91 5 0.06
ACGTcount: A:0.19, C:0.32, G:0.33, T:0.16
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTACCGATGGAGTTCGACG
CAACCGCCCGCACCAGGGGCCATCT
Found at i:2533144 original size:13 final size:13
Alignment explanation
Indices: 2533123--2533170 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
2533113 ATGGTCGATG
2533123 CATGTGCCATCAC
1 CATGTGCCATCAC
*
2533136 CATGGGCCAT---
1 CATGTGCCATCAC
2533146 CATGTGCCATCAC
1 CATGTGCCATCAC
*
2533159 CATGCGCCATCA
1 CATGTGCCATCA
2533171 TGTGCCATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
10 9 0.31
13 20 0.69
ACGTcount: A:0.23, C:0.38, G:0.19, T:0.21
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2533151 original size:23 final size:23
Alignment explanation
Indices: 2533123--2533178 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
2533113 ATGGTCGATG
*
2533123 CATGTGCCATCACCATGGGCCAT
1 CATGTGCCATCACCATGCGCCAT
2533146 CATGTGCCATCACCATGCGCCAT
1 CATGTGCCATCACCATGCGCCAT
2533169 CATGTGCCAT
1 CATGTGCCAT
2533179 TGATGGTCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (23 bp):
CATGTGCCATCACCATGCGCCAT
Found at i:2534869 original size:26 final size:26
Alignment explanation
Indices: 2534839--2534891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2534829 GTTGACTTAG
2534839 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2534865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2534891 G
1 G
2534892 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2535220 original size:26 final size:26
Alignment explanation
Indices: 2535191--2535243 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2535181 GTTGACTTAG
*
2535191 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2535217 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2535243 G
1 G
2535244 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2535875 original size:89 final size:90
Alignment explanation
Indices: 2535690--2535886 Score: 220
Period size: 89 Copynumber: 2.2 Consensus size: 90
2535680 ATGCTCGACA
* * * * * *
2535690 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCATGGCCCAACATGTGCCGATGGTGTTCAATG
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGACCCAACATATGCCGATGGCGATCAAGG
* * *
2535755 CAACTGCCTGCACCAAGGGCCATCT
66 CAACTGCCCGCACCAAGGGCCAGCC
* * * *
2535780 TATGCCGATAGG-GGTTG-GGCAACCACCCGCACCAAGACCCAGCTTATGCCGATGGCGATCAAG
1 TGTGCCGAT-GGTGGTCGAGGCAACCACCCGCACCAAGACCCAACATATGCCGATGGCGATCAAG
*
2535843 GCAAGTGCCCGCACCAATGGG-CAGCC
65 GCAACTGCCCGCACCAA-GGGCCAGCC
*
2535869 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2535887 TGCATGTGGC
Statistics
Matches: 86, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
88 1 0.01
89 68 0.79
90 15 0.17
91 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.29, T:0.17
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGACCCAACATATGCCGATGGCGATCAAGG
CAACTGCCCGCACCAAGGGCCAGCC
Found at i:2536035 original size:11 final size:11
Alignment explanation
Indices: 2536019--2536051 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
2536009 CCCGAGGCAC
2536019 CATCGTCGGAG
1 CATCGTCGGAG
2536030 CATCGTCGGAG
1 CATCGTCGGAG
*
2536041 CATCATCGGAG
1 CATCGTCGGAG
2536052 AACCTAACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:2536812 original size:26 final size:26
Alignment explanation
Indices: 2536782--2536834 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2536772 GTTGACTGAG
2536782 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
2536808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2536834 G
1 G
2536835 ATCAAACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2538405 original size:26 final size:26
Alignment explanation
Indices: 2538375--2538427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2538365 GTTGACTTAG
2538375 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2538401 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2538427 G
1 G
2538428 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2538767 original size:26 final size:26
Alignment explanation
Indices: 2538728--2538781 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
2538718 TGGGTTGACT
*
2538728 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
*
2538754 TAGGCATACAGAGTTCATTCCTAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
2538780 TA
1 TA
2538782 AGATCGGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:2540243 original size:26 final size:26
Alignment explanation
Indices: 2540191--2540243 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2540181 GTTGACTTAG
* * *
2540191 GCATACGGAGTTCATCTCCAGTGTAA
1 GCATACGAAGTTCATCTCCAATCTAA
2540217 GCATACGAAGTTCAT-TCCCAATCTAA
1 GCATACGAAGTTCATCT-CCAATCTAA
2540243 G
1 G
2540244 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCTCCAATCTAA
Found at i:2541020 original size:45 final size:45
Alignment explanation
Indices: 2540939--2541143 Score: 159
Period size: 45 Copynumber: 4.6 Consensus size: 45
2540929 GGTGGGCTCG
*
2540939 GCATGTG-TCGATGGTGGTCGAGGCAATCGCCCACACCATGGC-CCA
1 GCATGTGCT-GATGGTGGTCGAGGCAACCGCCCACACCA-GGCGCCA
* * * *
2540984 GCATGTGCTGATGGTGTTTGATGCAACCGCCTACACCAGGCGCCA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGCGCCA
* * * * * ** *
2541029 TCTTGTGCCGATGGTGGTCGAGGCAATCACCCTTACCAAGG-GTC-
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCACACC-AGGCGCCA
* * *
2541073 GCATGTGCCGATGGTGATCGAGGCAACCACCCACACCAGG-GCCCA
1 GCATGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGCG-CCA
* * * *
2541118 GCTTGTGCCGATGGCGATCGAGGCAA
1 GCATGTGCTGATGGTGGTCGAGGCAA
2541144 GTGCCCATAC
Statistics
Matches: 129, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
43 4 0.03
44 35 0.27
45 86 0.67
46 4 0.03
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
GCATGTGCTGATGGTGGTCGAGGCAACCGCCCACACCAGGCGCCA
Found at i:2541099 original size:89 final size:90
Alignment explanation
Indices: 2540942--2541143 Score: 237
Period size: 89 Copynumber: 2.3 Consensus size: 90
2540932 GGGCTCGGCA
* * * * * * *
2540942 TGTGTCGATGGTGGTCGAGGCAATCGCCCACACCATGGCCCAGCATGTGCTGATGGTGTTTGATG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
* * *
2541007 CAACCGCCTACACCA-GGCGCCATCT
66 CAACCACCCACACCAGGGC-CCAGCT
** **
2541032 TGTGCCGATGGTGGTCGAGGCAATCACCCTTACCAAGGGTC-GCATGTGCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
2541096 CAACCACCCACACCAGGGCCCAGCT
66 CAACCACCCACACCAGGGCCCAGCT
* *
2541121 TGTGCCGATGGCGATCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2541144 GTGCCCATAC
Statistics
Matches: 95, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
89 58 0.61
90 37 0.39
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAATCACCCACACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
CAACCACCCACACCAGGGCCCAGCT
Found at i:2541170 original size:45 final size:44
Alignment explanation
Indices: 2540939--2541171 Score: 143
Period size: 45 Copynumber: 5.2 Consensus size: 44
2540929 GGTGGGCTCG
* * * * * *
2540939 GCATGTGTCGATGGTGGTCGAGGCAATCGCCCACACCATGGCCCA
1 GCATGTGCCGATGGTGATCGAGGCAAT-ACCCATACCAAGGGCCA
* * * * * *
2540984 GCATGTGCTGATGGTGTTTGATGC-A-ACCGCCTACACCAGGCGCCA
1 GCATGTGCCGATGGTGATCGAGGCAATACC-CATAC-CAAGG-GCCA
* * * * *
2541029 TCTTGTGCCGATGGTGGTCGAGGCAATCACCCTTACCAAGGGTC-
1 GCATGTGCCGATGGTGATCGAGGCAAT-ACCCATACCAAGGGCCA
* *
2541073 GCATGTGCCGATGGTGATCGAGGCAACCACCCACACC-AGGGCCCA
1 GCATGTGCCGATGGTGATCGAGGCAA-TACCCATACCAAGGG-CCA
* * *
2541118 GCTTGTGCCGATGGCGATCGAGGCAAGTGCCCATACCAAAGGG-CA
1 GCATGTGCCGATGGTGATCGAGGCAA-TACCCATACC-AAGGGCCA
*
2541163 GCCTGTGCC
1 GCATGTGCC
2541172 AATGATGGTT
Statistics
Matches: 143, Mismatches: 34, Indels: 22
0.72 0.17 0.11
Matches are distributed among these distances:
42 2 0.01
43 7 0.05
44 35 0.24
45 83 0.58
46 5 0.03
47 8 0.06
48 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.18
Consensus pattern (44 bp):
GCATGTGCCGATGGTGATCGAGGCAATACCCATACCAAGGGCCA
Found at i:2542122 original size:26 final size:26
Alignment explanation
Indices: 2542085--2542137 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2542075 GTTGACTTAG
*
2542085 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
2542111 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2542137 G
1 G
2542138 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2542477 original size:26 final size:26
Alignment explanation
Indices: 2542441--2542493 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2542431 GCTGACTTAG
2542441 GCATACGGAGTTCACTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
*
2542467 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCACTCCCAATCTAA
2542493 G
1 G
2542494 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAATCTAA
Found at i:2543091 original size:45 final size:45
Alignment explanation
Indices: 2542960--2543097 Score: 109
Period size: 45 Copynumber: 3.1 Consensus size: 45
2542950 GCCGATATTA
*** * * **
2542960 GTCGAGGCAACCG-TCGACACCACTACCCAGCATGTGCCAATACTG
1 GTCGAGGCAACCGCTCG-CACCAGGGCCCAGCTTGTGCCGATGGTG
* * * * * * *
2543005 TTCGATGCAACCGCCCGTACCAGAGG-CCATCTTATGTCGATGGTG
1 GTCGAGGCAACCGCTCGCACCAG-GGCCCAGCTTGTGCCGATGGTG
*
2543050 GTCGAGGCAACCGCTCGCACCAGGGCCCAGCTTGTGCCGATGGCG
1 GTCGAGGCAACCGCTCGCACCAGGGCCCAGCTTGTGCCGATGGTG
2543095 GTC
1 GTC
2543098 AAGGTAGGTG
Statistics
Matches: 68, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
44 2 0.03
45 64 0.94
46 2 0.03
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.18
Consensus pattern (45 bp):
GTCGAGGCAACCGCTCGCACCAGGGCCCAGCTTGTGCCGATGGTG
Found at i:2543165 original size:13 final size:13
Alignment explanation
Indices: 2543147--2543171 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2543137 ATGGGCGATG
2543147 CATGTGCCATCAC
1 CATGTGCCATCAC
2543160 CATGTGCCATCA
1 CATGTGCCATCA
2543172 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2543691 original size:13 final size:13
Alignment explanation
Indices: 2543673--2543706 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
2543663 TAGTCGATGT
2543673 GCCATCATCATGC
1 GCCATCATCATGC
*
2543686 GCCATCACCATGC
1 GCCATCATCATGC
2543699 GCCATCAT
1 GCCATCAT
2543707 GTGCCATTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.24, C:0.41, G:0.15, T:0.21
Consensus pattern (13 bp):
GCCATCATCATGC
Found at i:2544964 original size:26 final size:26
Alignment explanation
Indices: 2544928--2544979 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2544918 TTCACTTCGA
*
2544928 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
2544954 CATACGGAGTTCATTCCCAATCTAAG
1 CATACGGAGTTCATTCCCAATCTAAG
2544980 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAG
Found at i:2545443 original size:45 final size:45
Alignment explanation
Indices: 2545394--2545501 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
2545384 CAGCATGTGC
* * * * * *
2545394 CGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCTTATGT
1 CGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCTTATGT
* *
2545439 CGATGGTGGTCAAGGCAACCACCCACACTAGGGCCCAGCTTGTGT
1 CGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCTTATGT
* *
2545484 CGATGGCGGTCGAGGCAA
1 CGATGGTGGTCAAGGCAA
2545502 GTGCCCGTAG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (45 bp):
CGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCTTATGT
Found at i:2545638 original size:26 final size:26
Alignment explanation
Indices: 2545601--2545653 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2545591 GTTGACTTAG
2545601 GCATACGAAGTTCA-TCTCCAGTCTAA
1 GCATACGAAGTTCATTC-CCAGTCTAA
*
2545627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2545653 G
1 G
2545654 ATGGATCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2546109 original size:45 final size:46
Alignment explanation
Indices: 2546011--2546165 Score: 144
Period size: 45 Copynumber: 3.5 Consensus size: 46
2546001 TATCACAGCC
* * * *
2546011 CAGCATGTGCCGATGGTGTTCGA--T-ACCGCCAGCACCAGGGGC-
1 CAGCTTGTGCCGATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCA
* *
2546053 CATCTTATGCCGATGGTGGTCGAGGTAACCGCCTGCA-CAAGGGCA
1 CAGCTTGTGCCGATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCA
* ** *
2546098 CAGCTTGTGCCGATGGTGGTCGAGGCAAGTGCCTGTACCAAAGGGCA
1 CAGCTTGTGCCGATGGTGGTCGAGGTAACCGCCTGCACC-AAGGGCA
* *
2546145 -A-CCTGTGCCGATGATGGTCGA
1 CAGCTTGTGCCGATGGTGGTCGA
2546166 TGCATCCTAC
Statistics
Matches: 93, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
42 19 0.20
44 7 0.08
45 58 0.62
46 2 0.02
47 7 0.08
ACGTcount: A:0.21, C:0.26, G:0.34, T:0.19
Consensus pattern (46 bp):
CAGCTTGTGCCGATGGTGGTCGAGGTAACCGCCTGCACCAAGGGCA
Found at i:2546261 original size:26 final size:26
Alignment explanation
Indices: 2546225--2546277 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2546215 GTTGACTTAG
* *
2546225 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
2546251 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
2546277 G
1 G
2546278 ATGGACCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:2547874 original size:196 final size:195
Alignment explanation
Indices: 2547524--2547928 Score: 442
Period size: 196 Copynumber: 2.1 Consensus size: 195
2547514 CGTAGTGCGC
* * * * *
2547524 TCCCAGTCTATGATCGAACCAGACGAGGGTTGCCACAGCAGGAGCCGTAGCGGGATCGAGAGCAC
1 TCCCAGTCTAAGATCGAACCAAACGAGGGTTGCCACAGCAGGAGCCGCAGCAGGATCGACAGCAC
* * * * * *
2547589 GTAAAGTGGATCGGGTCGATCCCTGGCTTATGCATCCTGCCTCTCTGGCCGACTGAGCACCTGCA
66 GTAAAGTGGATCGGGTCAATCCCCGGCTTATGCATCATGCCTCTCCGACCGACTCAGCACCTGCA
* * * * **
2547654 TGCTCGTTTCGTGGGTTTACTTAGGCATAC-AGAGTTCATCCCCAGTCTAAGCATA-TGAGTTTT
131 CGCTCATTTCGTGGGTTGACTTAGGCATACGA-AGTTCATCCCCAGTCTAAGCATACGGAGTTCA
2547717 T
195 T
** *
2547718 TCCCAGTCTAAGATCGAACCAAACTGAGGGTTGCGGCAGCAGGA-CCAGCAGTAGGATCGACAGC
1 TCCCAGTCTAAGATCGAACCAAAC-GAGGGTTGCCACAGCAGGAGCC-GCAGCAGGATCGACAGC
* * * * * *
2547782 ATGTAGGGAG-GGA-CTGGGTCAATCCCCGGCTTGTGCATTATGCCTCTCCGACCGGCTCAGCGC
64 ACGTA--AAGTGGATC-GGGTCAATCCCCGGCTTATGCATCATGCCTCTCCGACCGACTCAGCAC
* ** *
2547845 CTGCACGTTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTTCTAGTCTAAGCATACGGAG
126 CTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAG
2547910 TTCAT
191 TTCAT
*
2547915 TCCCAGTCTTAGAT
1 TCCCAGTCTAAGAT
2547929 TAGACCGACA
Statistics
Matches: 173, Mismatches: 31, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
194 24 0.14
195 35 0.20
196 92 0.53
197 22 0.13
ACGTcount: A:0.22, C:0.26, G:0.27, T:0.25
Consensus pattern (195 bp):
TCCCAGTCTAAGATCGAACCAAACGAGGGTTGCCACAGCAGGAGCCGCAGCAGGATCGACAGCAC
GTAAAGTGGATCGGGTCAATCCCCGGCTTATGCATCATGCCTCTCCGACCGACTCAGCACCTGCA
CGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCAGTCTAAGCATACGGAGTTCAT
Found at i:2547922 original size:26 final size:26
Alignment explanation
Indices: 2547874--2547923 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
2547864 GTTGACTTAG
* *
2547874 GCATACGAAGTTCATTTCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
2547900 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGAAGTTCATTCCCAGTCT
2547924 TAGATTAGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2548518 original size:45 final size:45
Alignment explanation
Indices: 2548385--2548538 Score: 157
Period size: 45 Copynumber: 3.4 Consensus size: 45
2548375 TTGACATGTA
* * * *
2548385 CCGATGGTGGTCGAGGGAACCGCCCGCACCATGGCCCAGCATGTG
1 CCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCTCAGCTTGTG
* * * * * * *
2548430 TCGATGGTGTTCGATGCAACCGCTCGTATCGAGGGCT-ATCTTGTG
1 CCGATGGTGGTCGAGGCAACCGCCCGCA-CCAGGGCTCAGCTTGTG
* *
2548475 CCGATGGTGGTCGAGGCAACCACCCCCACCAGGGCTCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCTCAGCTTGTG
* *
2548520 CCGATGGCGATCGAGGCAA
1 CCGATGGTGGTCGAGGCAA
2548539 GTGCCCGTAC
Statistics
Matches: 85, Mismatches: 22, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
44 7 0.08
45 73 0.86
46 5 0.06
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCTCAGCTTGTG
Found at i:2548565 original size:90 final size:90
Alignment explanation
Indices: 2548385--2548575 Score: 195
Period size: 90 Copynumber: 2.1 Consensus size: 90
2548375 TTGACATGTA
* * * * * * * *
2548385 CCGATGGTGGTCGAGGGAACCGCCCGCACCATGGCCCAGCATGTGTCGATGGTGTTCGATGCAAC
1 CCGATGGTGGTCGAGGCAACCACCCCCACCAGGGCCCAGCATGTGCCGATGGCGATCGAGGCAAC
* * * * *
2548450 CGCTCGTATCGAGGGCTATCTTGTG
66 CGCCCGTACCAAGGGCTAGCCTGTG
* * *
2548475 CCGATGGTGGTCGAGGCAACCACCCCCACCAGGGCTCAGCTTGTGCCGATGGCGATCGAGGCAAG
1 CCGATGGTGGTCGAGGCAACCACCCCCACCAGGGCCCAGCATGTGCCGATGGCGATCGAGGCAAC
*
2548540 TGCCCGTACCAAAGGGC-AGCCTGTG
66 CGCCCGTACC-AAGGGCTAGCCTGTG
* *
2548565 CCAATGATGGT
1 CCGATGGTGGT
2548576 TTATGCATGT
Statistics
Matches: 81, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
90 76 0.94
91 5 0.06
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
CCGATGGTGGTCGAGGCAACCACCCCCACCAGGGCCCAGCATGTGCCGATGGCGATCGAGGCAAC
CGCCCGTACCAAGGGCTAGCCTGTG
Found at i:2548922 original size:26 final size:26
Alignment explanation
Indices: 2548886--2548938 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2548876 GTTGACTTAG
* *
2548886 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
2548912 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
2548938 G
1 G
2548939 ATGGACCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:2549289 original size:26 final size:26
Alignment explanation
Indices: 2549252--2549302 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2549242 GTTGACTTAG
2549252 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2549278 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATCCCCAGTCTA
2549303 TGATCGGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2549815 original size:45 final size:45
Alignment explanation
Indices: 2549751--2549928 Score: 187
Period size: 45 Copynumber: 4.0 Consensus size: 45
2549741 TCATTTTGTG
* * * *
2549751 GCCCG-ACCGAGGCTCAGCATGTATCGATGGTGGTCAAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACC
* * * *
2549795 GCCCGCACCATGGCCCAGCATGTGTCGATGGTGTTCGACGCAATC
1 GCCCGCACCAAGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACC
* * * * *
2549840 GCCCGCACCAAGGGCCATCTTGTGCCGATGGTGGTTGAGGCAACC
1 GCCCGCACCAAGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACC
* * * *
2549885 GCCCCCACCAAGGCCCAAGCTTGTGTCGATGGCGATCGAGGCAA
1 GCCCGCACCAAGGCCC-AGCATGTGTCGATGGTGGTCGAGGCAA
2549929 GTGCCCGTAC
Statistics
Matches: 108, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
44 5 0.05
45 81 0.75
46 22 0.20
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (45 bp):
GCCCGCACCAAGGCCCAGCATGTGTCGATGGTGGTCGAGGCAACC
Found at i:2550312 original size:26 final size:26
Alignment explanation
Indices: 2550276--2550326 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2550266 GTTGACTTAG
2550276 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2550302 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATCCCCAGTCTA
2550327 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2550501 original size:26 final size:26
Alignment explanation
Indices: 2550472--2550524 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2550462 GTTGACTTAG
*
2550472 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2550498 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2550524 G
1 G
2550525 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2552138 original size:26 final size:26
Alignment explanation
Indices: 2552108--2552160 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2552098 GTTGACTTAG
2552108 GCATACGGAGTTCA-TCTCCAGTCTAA
1 GCATACGGAGTTCATTC-CCAGTCTAA
2552134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2552160 G
1 G
2552161 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2552493 original size:26 final size:26
Alignment explanation
Indices: 2552464--2552516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2552454 GTTGACTTTG
*
2552464 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2552490 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2552516 G
1 G
2552517 TTTGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2558285 original size:26 final size:26
Alignment explanation
Indices: 2558249--2558301 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2558239 GTTGACTTAG
*
2558249 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
*
2558275 GCATACAGAGTTCATTTCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGCCTAA
2558301 G
1 G
2558302 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGCCTAA
Found at i:2558739 original size:136 final size:136
Alignment explanation
Indices: 2558495--2558754 Score: 351
Period size: 136 Copynumber: 1.9 Consensus size: 136
2558485 AGTGGGATTG
* *
2558495 GTAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTGCCCATTATACCTCTCCAACCGGCTAAG
1 GTAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTGCCCATCATACCTCTCCAACCGACTAAG
* *
2558560 CGCCTGTACGCTCTTTTCATAGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
66 CGCCTGTACGCTCGTTTCATAGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
2558625 CTGGCA
131 CTGGCA
* * * **** *
2558631 GTAGCACGCAGAGGGGGACCGAGCTGATCCTC-GACTTGCGCATCCTACCTCTCTGTTCGACTGA
1 GTAGCACGCAGAGGGGGACCGAGCTGATCCCCAG-CTTGCCCATCATACCTCTCCAACCGACTAA
* * * * *
2558695 GTGCTTGTACGCTCGTTTCATGGGTTGACTAAGGCATACGGAGTTCATTCCCTGTCTAAG
65 GCGCCTGTACGCTCGTTTCATAGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAG
2558755 CCCCAACCGG
Statistics
Matches: 106, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
135 1 0.01
136 105 0.99
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (136 bp):
GTAGCACGCAGAGGGGGACCGAGCTGATCCCCAGCTTGCCCATCATACCTCTCCAACCGACTAAG
CGCCTGTACGCTCGTTTCATAGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
CTGGCA
Found at i:2559108 original size:45 final size:45
Alignment explanation
Indices: 2559058--2559261 Score: 144
Period size: 45 Copynumber: 4.6 Consensus size: 45
2559048 CAGGGCTCGA
* *
2559058 CATGTGTCGATGGTGGTCGAGGCAACCGCCTGCACCATGGCCCAG
1 CATGTGTCGATGGTGGTCGAGGCAACCACCTGCACCAAGGCCCAG
* * * * * *
2559103 CATGTGCCAATGGTGTTCGATGG-AACCACCCGCACCAAGGGCCAT
1 CATGTGTCGATGGTGGTCGA-GGCAACCACCTGCACCAAGGCCCAG
* * * * * * * *
2559148 CTTGTGCCTATGGTGGTCGAGGCCATCGCCTACACCAAGGGCC-G
1 CATGTGTCGATGGTGGTCGAGGCAACCACCTGCACCAAGGCCCAG
* * * * * *
2559192 ACATGTGTCGATGGTGATCAAGGCAATCACC-GCACTAGGGCTCAG
1 -CATGTGTCGATGGTGGTCGAGGCAACCACCTGCACCAAGGCCCAG
* **
2559237 CTTGTGTCGATGGCAGTCGAGGCAA
1 CATGTGTCGATGGTGGTCGAGGCAA
2559262 GTACCAGTAC
Statistics
Matches: 121, Mismatches: 34, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
44 29 0.24
45 90 0.74
46 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (45 bp):
CATGTGTCGATGGTGGTCGAGGCAACCACCTGCACCAAGGCCCAG
Found at i:2560584 original size:26 final size:26
Alignment explanation
Indices: 2560555--2560607 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2560545 GTTGACTTAG
2560555 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
2560581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
2560607 G
1 G
2560608 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:2561106 original size:45 final size:45
Alignment explanation
Indices: 2561056--2561215 Score: 173
Period size: 45 Copynumber: 3.6 Consensus size: 45
2561046 CTGGGGCTCG
* *
2561056 ACATGTGTCGATGGTGGTCGAGGCAACCGCTCGCACCAGGACCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAGGGCCCA
* * * *
2561101 ACATGTGCCGATGGTGTTCGATGCAACCG-TC-CACACTAGGGGCTA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCTCGCAC-C-AGGGCCCA
* * * *
2561146 TCTTGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAGGGCCCA
1 ACATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAGGGCCCA
* *
2561191 ACTTGTGCCGATGG-CGTCGAGGCAA
1 ACATGTGCCGATGGTGGTCGAGGCAA
2561216 GTGCCCGTAC
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
43 3 0.03
44 12 0.13
45 75 0.79
46 2 0.02
47 3 0.03
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
ACATGTGCCGATGGTGGTCGAGGCAACCGCTCGCACCAGGGCCCA
Found at i:2562331 original size:195 final size:195
Alignment explanation
Indices: 2561999--2562379 Score: 491
Period size: 195 Copynumber: 2.0 Consensus size: 195
2561989 TACGTAGTAC
* * * ** * *
2561999 GCTCCCAGTCTAAGATCAGATCGGATCAAGGGTTGCGGTAGTAGACCTGCAGTGGGATCGGCAGC
1 GCTCCCAGTATAAGATCAGACCGGACCAAGGGTTGCGACAGTAGACCTGCAGTGAGATCGACAGC
* *
2562064 ATGCAGAGAGGATCGGGTTGATTCCCAACTTATGCATCCTGCCTCTCTAGCCTGTTAAGCGCCCG
66 ACGCAGAGAGGATCGGGTTGATTCCCAACTTATGCATCCTGCCTCTCTAGCCTGCTAAGCGCCCG
* * * *
2562129 CACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATCCCCAGTCTAAGCATTCATAGTGT
131 CACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATTCATAGTGT
* *
2562194 GCTCCCAGTATAAGATCAGACCGGACCAAGGGTTGTGACAGTAGGACCTGTAGTGAGATCGACAG
1 GCTCCCAGTATAAGATCAGACCGGACCAAGGGTTGCGACAGTA-GACCTGCAGTGAGATCGACAG
* ** * * * *
2562259 CACGCAGAGGGGATCGGGTTGA-TCCTCGGC-T-TGCCATCCTGCCTCTTTGGTC-GACTGAGCG
65 CACGCAGAGAGGATCGGGTTGATTCC-CAACTTATG-CATCCTGCCTCTCTAGCCTG-CTAAGCG
*
2562320 CCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGGGTTCATCCCCAATCTAAGCAT
127 CCCGCACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCAT
2562380 ACAGAGTTCA
Statistics
Matches: 159, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
194 3 0.02
195 116 0.73
196 40 0.25
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (195 bp):
GCTCCCAGTATAAGATCAGACCGGACCAAGGGTTGCGACAGTAGACCTGCAGTGAGATCGACAGC
ACGCAGAGAGGATCGGGTTGATTCCCAACTTATGCATCCTGCCTCTCTAGCCTGCTAAGCGCCCG
CACGCTCGTTTCATCGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATTCATAGTGT
Found at i:2563293 original size:39 final size:39
Alignment explanation
Indices: 2563250--2563326 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
2563240 CAACCACCCA
* * *
2563250 CACCAGGGTCCATCTTGTGCTGATGGTGGTCAAGGCAAC
1 CACCAGGGCCCAGCTTGTGCCGATGGTGGTCAAGGCAAC
*
2563289 CACCAGGGCCCAGCTTGTGCCGATGGTGGTCGAGGCAA
1 CACCAGGGCCCAGCTTGTGCCGATGGTGGTCAAGGCAA
2563327 GTGCCCGTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.19, C:0.27, G:0.34, T:0.19
Consensus pattern (39 bp):
CACCAGGGCCCAGCTTGTGCCGATGGTGGTCAAGGCAAC
Found at i:2566666 original size:26 final size:26
Alignment explanation
Indices: 2566629--2566681 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2566619 GTTGACTTAG
* *
2566629 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAATCTAA
*
2566655 GCATACGGAGTTCACTCCCAATCTAA
1 GCATACGAAGTTCACTCCCAATCTAA
2566681 G
1 G
2566682 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAATCTAA
Found at i:2567943 original size:26 final size:26
Alignment explanation
Indices: 2567913--2567965 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2567903 GTTGACTTCG
*
2567913 GCATATAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
2567939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2567965 G
1 G
2567966 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2568415 original size:136 final size:136
Alignment explanation
Indices: 2568171--2568421 Score: 317
Period size: 136 Copynumber: 1.8 Consensus size: 136
2568161 AACGGGACTG
* * **
2568171 GCAGCACGCAGAGGGGGACTGGGCCGATCCCAGGCTTACGCATTATGCCTTTCCGATCGGGTCAG
1 GCAGCACGCAGAGGGGGACTGAGCCGATCCCAGGCTTACGCATTATGCCTCTCCGATCGACTCAG
* * **
2568236 CACCCGTAAGCTCGTTTCGCGGGTTGACTGAGGCATATTGAGTTCATTCCCAGTCTAAGATCAGA
66 CACCCGCAAGCTCATTTCGCGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
2568301 CCGGCA
131 CCGGCA
* ** *
2568307 GCAGCACGCAGAGGGGGACTGAGCTGATCCTCA-GCTTGTGCATCT-TGCCTCTCCGATCGACTG
1 GCAGCACGCAGAGGGGGACTGAGCCGATCC-CAGGCTTACGCAT-TATGCCTCTCCGATCGACTC
** * * *
2568370 AGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
64 AGCACCCGCAAGCTCATTTCGCGGGTTGACTGAGGCATACGGAGTTCATTCC
2568422 TGGTCTCAGA
Statistics
Matches: 96, Mismatches: 17, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
136 93 0.97
137 3 0.03
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (136 bp):
GCAGCACGCAGAGGGGGACTGAGCCGATCCCAGGCTTACGCATTATGCCTCTCCGATCGACTCAG
CACCCGCAAGCTCATTTCGCGGGTTGACTGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGCA
Found at i:2568850 original size:45 final size:45
Alignment explanation
Indices: 2568740--2568894 Score: 177
Period size: 45 Copynumber: 3.4 Consensus size: 45
2568730 CTCGACATGC
* **
2568740 GCCGATAGTGGTCGAGGCAACCGCCCACACCACTGCCCAGCTTGT
1 GCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGT
* * * * *
2568785 GCCGATGGTGTTCAATGCAACCGCCCACACCAGGGGCCA-TTCTGT
1 GCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCT-TGT
** * *
2568830 GCCGATGGTGGTCGAGGCAACTACTCGCACCAGGGCCCAGCTTGT
1 GCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGT
*
2568875 GCCGATGGCGGTCGAGGCAA
1 GCCGATGGTGGTCGAGGCAA
2568895 GTGCCCGTAC
Statistics
Matches: 90, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
44 1 0.01
45 88 0.98
46 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (45 bp):
GCCGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGCTTGT
Found at i:2570033 original size:197 final size:197
Alignment explanation
Indices: 2569680--2570049 Score: 458
Period size: 197 Copynumber: 1.9 Consensus size: 197
2569670 CGTAGTGCGC
* ** *
2569680 TCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGTAGCAGGACCCGCAACAGGATCGGCAGCA
1 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGACCAACAACAGGATCGACAGCA
* * * *** *
2569745 CAGAGAGGGGACCAGGTTGATCCTCGGCTTACGCATCTTGCCTCTTTGGCAGGCTAAGCGCCCGC
66 CAGAGAGGGGACCAGGTGGATCCCCGGCTTACGCATCTTACCTCTCCAGCAGGCTAAGCCCCCGC
* *
2569810 ATGCTCGTTTCATGGGTTGACTTAGGCATAGGGAGTTC-TTCCCCAGTCTAAGCTTACGAAGTTC
131 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAGCTTACGAAGTTC
2569874 AT
196 AT
* * * * *
2569876 TCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGTAGGACCAATAGCAGGATCGACAGCA
1 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGACCAACAACAGGATCGACAGCA
* * * * ** *
2569941 -GGTAAGGGGGGATCGGGTGGATCCCCGGCTTACGCAT-TCTACCTCTCCAGCCTGCTGAGCCCC
66 CAG--AGAGGGGACCAGGTGGATCCCCGGCTTACGCATCT-TACCTCTCCAGCAGGCTAAGCCCC
*
2570004 CGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCC
128 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
2570050 ATGTCTAAGC
Statistics
Matches: 144, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
195 1 0.01
196 57 0.40
197 82 0.57
198 4 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (197 bp):
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGACCAACAACAGGATCGACAGCA
CAGAGAGGGGACCAGGTGGATCCCCGGCTTACGCATCTTACCTCTCCAGCAGGCTAAGCCCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCCAGTCTAAGCTTACGAAGTTC
AT
Found at i:2570703 original size:45 final size:44
Alignment explanation
Indices: 2570654--2570782 Score: 132
Period size: 45 Copynumber: 2.9 Consensus size: 44
2570644 TGACATGTGT
* *
2570654 CGATGGTGGTCGAGGCAACTGCTCGCACCATGGCCCAGCATGTAC
1 CGATGGTGGTCGAGGCAACCGC-CGCACCAGGGCCCAGCATGTAC
* * * * * * * *
2570699 CGATGGTGTTCGATGCAACCACCAGCACTAGGGGCCATCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCC-GCACCAGGGCCCAGCATGTAC
*
2570744 CGATGGTGGTCGAGGCAACCGCCCACACCAGGGCCCAGC
1 CGATGGTGGTCGAGGCAACCG-CCGCACCAGGGCCCAGC
2570783 CATTAAAGTG
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
44 1 0.02
45 62 0.95
46 2 0.03
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (44 bp):
CGATGGTGGTCGAGGCAACCGCCGCACCAGGGCCCAGCATGTAC
Found at i:2571821 original size:159 final size:159
Alignment explanation
Indices: 2571486--2571885 Score: 457
Period size: 159 Copynumber: 2.5 Consensus size: 159
2571476 CAGATGCCCG
* * *
2571486 GCTTGCGCATTCTACCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
** * *****
2571551 CATACGGAGTTCATTCCAT-GTCTAAGCCCCAACCGGACTGAGGGTTGTGGCAGCGGGACCGACA
66 CATACGGAGTTCATTCC-TGGTCTAAGCCCCAACCAAACTAAGGGTACCCACAGCGGGACCGACA
* * *
2571615 GCACGCAGAGGGGGACCGGGTCGATCCTCA
130 GCACACAGAGAGGGACAGGGTCGATCCTCA
* * * * *
2571645 GCTTACGCATTATGCCTCTCCGGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * **
2571710 CATACGGAGTTCATTCCTGGTCTAAGCCCCAACCAAACTAAGGG-ACCCACAGTGGGATCGGTAG
66 CATACGGAGTTCATTCCTGGTCTAAGCCCCAACCAAACTAAGGGTACCCACAGCGGGACCGACAG
2571774 CACACAGAGAGGGACAGGG-CTGATCCTCA
131 CACACAGAGAGGGACAGGGTC-GATCCTCA
* * * ** * * *
2571803 GTTTGCGCATTCTGGC-CTCCGACCGATTGAGTGCTCACACGCTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* *
2571867 CATACGTAGTGCATTCCTG
66 CATACGGAGTTCATTCCTG
2571886 TTCTCGACCA
Statistics
Matches: 201, Mismatches: 38, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
157 57 0.28
158 48 0.24
159 96 0.48
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.23
Consensus pattern (159 bp):
GCTTGCGCATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
CATACGGAGTTCATTCCTGGTCTAAGCCCCAACCAAACTAAGGGTACCCACAGCGGGACCGACAG
CACACAGAGAGGGACAGGGTCGATCCTCA
Found at i:2572187 original size:45 final size:45
Alignment explanation
Indices: 2572051--2572189 Score: 127
Period size: 45 Copynumber: 3.1 Consensus size: 45
2572041 TGTGCTGATA
* * * * *
2572051 GTGGTCGAGGCAACCGCCCGCACCACGGCCTAGCATGTGTCAATG
1 GTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCAATG
* * ** * * * * *
2572096 GTGTTTGATGCAACCGCTAGTAGCAGGG-GCATCTTGTACCAATG
1 GTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCAATG
* *
2572140 GTGGTTGAGGCAACCACCCGCACCAGGGCCCAGCTTGTGCCGATG
1 GTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCAATG
2572185 GTGGT
1 GTGGT
2572190 CGACGCAAGG
Statistics
Matches: 68, Mismatches: 25, Indels: 2
0.72 0.26 0.02
Matches are distributed among these distances:
44 31 0.46
45 37 0.54
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (45 bp):
GTGGTTGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCAATG
Found at i:2573615 original size:45 final size:44
Alignment explanation
Indices: 2573544--2573721 Score: 151
Period size: 45 Copynumber: 4.0 Consensus size: 44
2573534 TCGGGGCTTG
* *
2573544 ACATGTGTCGATGGTTGTT-GAGGCAACCGCCCGCACCATGGCACA
1 ACATGTGCCGATGG-TGTTCGAGGCAACCGCCCGCACCAAGGC-CA
* * * * *
2573589 GCATGTGCCGATGGTGTTCGATGCAACTGCCCGTACCAGGGGCCA
1 ACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCA-AGGCCA
* * * * ** *
2573634 TCTTGTGCCGATGGTGGTAGAGGCAATTGCCCGCACCAAGGGTCA
1 ACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAA-GGCCA
* * * *
2573679 ACATGTGCCGATGGTGATCGAGGCAACCACCCACACCAGGGCC
1 ACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCC
2573722 TAGCTCGTGC
Statistics
Matches: 105, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
44 7 0.07
45 95 0.90
46 3 0.03
ACGTcount: A:0.21, C:0.29, G:0.31, T:0.19
Consensus pattern (44 bp):
ACATGTGCCGATGGTGTTCGAGGCAACCGCCCGCACCAAGGCCA
Found at i:2573717 original size:90 final size:90
Alignment explanation
Indices: 2573547--2573719 Score: 211
Period size: 90 Copynumber: 1.9 Consensus size: 90
2573537 GGGCTTGACA
* * * * * * *
2573547 TGTGTCGATGGTTGTTGAGGCAACCGCCCGCACCATGGCACAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTAGAGGCAACCGCCCGCACCAAGGCACAACATGTGCCGATGGTGATCGAGG
** **
2573612 CAACTGCCCGTACCAGGGGCCATCT
66 CAACCACCCACACCAGGGGCCATCT
** **
2573637 TGTGCCGATGGTGGTAGAGGCAATTGCCCGCACCAAGGGTCAACATGTGCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTAGAGGCAACCGCCCGCACCAAGGCACAACATGTGCCGATGGTGATCGAGG
2573702 CAACCACCCACACCAGGG
66 CAACCACCCACACCAGGG
2573720 CCTAGCTCGT
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 68 1.00
ACGTcount: A:0.21, C:0.28, G:0.32, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTAGAGGCAACCGCCCGCACCAAGGCACAACATGTGCCGATGGTGATCGAGG
CAACCACCCACACCAGGGGCCATCT
Found at i:2573894 original size:26 final size:26
Alignment explanation
Indices: 2573865--2573917 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2573855 GATGACTTAG
*
2573865 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
2573891 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2573917 G
1 G
2573918 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2574498 original size:45 final size:45
Alignment explanation
Indices: 2574357--2574497 Score: 176
Period size: 45 Copynumber: 3.1 Consensus size: 45
2574347 CAGGGCTCAG
* *
2574357 CTTGTGCCGATGGTGGTCGAGGCAACCACCCGTACCACGGCCCAA
1 CTTGTGCCGATGGTGGTCGACGCAACCGCCCGTACCACGGCCCAA
* * * * * *
2574402 CATGTGCCAATGGTGCTCGATGCAACCGCCCGCACCAACGG-CCAT
1 CTTGTGCCGATGGTGGTCGACGCAACCGCCCGTACC-ACGGCCCAA
* *
2574447 CTTGTGTCGATGGTGGTCGACGCAACCGCCCGTACCAGGGCCCAA
1 CTTGTGCCGATGGTGGTCGACGCAACCGCCCGTACCACGGCCCAA
2574492 CTTGTG
1 CTTGTG
2574498 TTGAAGGCCG
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 3 0.04
45 72 0.91
46 4 0.05
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.18
Consensus pattern (45 bp):
CTTGTGCCGATGGTGGTCGACGCAACCGCCCGTACCACGGCCCAA
Found at i:2574511 original size:45 final size:45
Alignment explanation
Indices: 2574418--2574511 Score: 100
Period size: 45 Copynumber: 2.1 Consensus size: 45
2574408 CCAATGGTGC
* * * **
2574418 TCGATGCAACCGCCCGCACCAACGGCCATCTTGTGTCGATGGTGG
1 TCGACGCAACCGCCCGCACCAACGGCCAACTTGTGTCGAAGGCCG
* * *
2574463 TCGACGCAACCGCCCGTACC-AGGGCCCAACTTGTGTTGAAGGCCG
1 TCGACGCAACCGCCCGCACCAACGG-CCAACTTGTGTCGAAGGCCG
2574508 TCGA
1 TCGA
2574512 GGCGAGTGCC
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
44 3 0.08
45 37 0.93
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (45 bp):
TCGACGCAACCGCCCGCACCAACGGCCAACTTGTGTCGAAGGCCG
Found at i:2575490 original size:26 final size:26
Alignment explanation
Indices: 2575460--2575512 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2575450 GTTGACTTAG
*
2575460 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
* *
2575486 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGAACTTCATCCCCAGTCTAA
2575512 G
1 G
2575513 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAACTTCATCCCCAGTCTAA
Found at i:2575853 original size:26 final size:26
Alignment explanation
Indices: 2575812--2575865 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
2575802 TGGGTTGACT
*
2575812 TAGGCATACAGAGTTCTTTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
* *
2575838 TAGGCATACGGGGTTCATTCCCAGTC
1 TAGGCATACAGAGTTCATTCCCAGTC
2575864 TA
1 TA
2575866 AGATCAAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACAGAGTTCATTCCCAGTC
Found at i:2576425 original size:45 final size:45
Alignment explanation
Indices: 2576308--2576467 Score: 149
Period size: 45 Copynumber: 3.5 Consensus size: 45
2576298 GTGGCTCGGT
*
2576308 ATGTACCGATGGTGGTCGAGGCAACCTGCCCGCACCAGGGCCCAGC
1 ATGTGCCGATGGTGGTCGAGGCAACC-GCCCGCACCAGGGCCCAGC
** * * ** *
2576354 ATGTGCCGATGGTATTCGACGTAACCGCCCGCACCAGGGGTCATC
1 ATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGC
* * * * *
2576399 TTGTGCTGATGGTGGTCAAGGCAACCGCCCGTACCAGGGCCTAGC
1 ATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGC
* * * * *
2576444 TTATGTCAATGGCGGTCGAGGCAA
1 ATGTGCCGATGGTGGTCGAGGCAA
2576468 GTGCCTGTAC
Statistics
Matches: 88, Mismatches: 26, Indels: 1
0.77 0.23 0.01
Matches are distributed among these distances:
45 67 0.76
46 21 0.24
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
ATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGC
Found at i:2578973 original size:26 final size:26
Alignment explanation
Indices: 2578944--2578996 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2578934 GTTGACTTAG
* *
2578944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
*
2578970 GCATACAGAGTTCGTTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
2578996 G
1 G
2578997 ATCGAATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:2579486 original size:45 final size:44
Alignment explanation
Indices: 2579435--2579546 Score: 134
Period size: 45 Copynumber: 2.5 Consensus size: 44
2579425 TCGAGGCTCG
*
2579435 GCATGTGCCGATGGTGGTCGAGCCAACCACCCACACCATGACCCA
1 GCATGTGCCGATGGTGGTCGAG-CAACCACCCACACCAGGACCCA
* * * * *
2579480 GCATGTGTCGATGGTGTTCGATGCAACCACCTAGACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGA-GCAACCACCCACACCAGGACCCA
* *
2579525 GCTTGTGCCGATGGTAGTCGAG
1 GCATGTGCCGATGGTGGTCGAG
2579547 GCAAGTGCCC
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
44 1 0.02
45 54 0.96
46 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (44 bp):
GCATGTGCCGATGGTGGTCGAGCAACCACCCACACCAGGACCCA
Found at i:2580528 original size:26 final size:26
Alignment explanation
Indices: 2580491--2580543 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2580481 GTTGACTTAG
2580491 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
2580517 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATCCCCAGTCTAA
2580543 G
1 G
2580544 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2582796 original size:26 final size:26
Alignment explanation
Indices: 2582758--2582810 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2582748 GTTAACTTAG
*
2582758 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
2582784 GCATAC-GAGGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCACTCTAA
2582810 G
1 G
2582811 ATCGTACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:2590253 original size:26 final size:26
Alignment explanation
Indices: 2590224--2590276 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2590214 GTTGACTTAG
2590224 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
2590250 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2590276 G
1 G
2590277 ATTGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2590609 original size:26 final size:26
Alignment explanation
Indices: 2590579--2590631 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2590569 GTTGACTTAG
* *
2590579 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2590605 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2590631 G
1 G
2590632 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2591216 original size:45 final size:44
Alignment explanation
Indices: 2591060--2591229 Score: 146
Period size: 45 Copynumber: 3.8 Consensus size: 44
2591050 TTGGGGGCCG
* * * *
2591060 ACCAGGGCTCGACATGTGCCGATGGTGGTCGAGGCAACCACCCC
1 ACCAAGGCTCGGCATGTGCCGATGGTGGTCGAGGCAAACGCCCC
* * * * * * *
2591104 ACCATGGCCCAGCATGTCCCGACGGTGTTCGATGCAAACGCCCGC
1 ACCAAGGCTCGGCATGTGCCGATGGTGGTCGAGGCAAACGCCC-C
* * * *
2591149 ACCAGAGGCT-GTCTTGTACCGATGGTGGTCGAGGCAATCGCCCAC
1 ACCA-AGGCTCGGCATGTGCCGATGGTGGTCGAGGCAAACGCCC-C
* *
2591194 ACCAAGGGTCGGCATGTGCCGATGGTGATCG-GGCAA
1 ACCAAGGCTCGGCATGTGCCGATGGTGGTCGAGGCAA
2591230 CCACCTGCAC
Statistics
Matches: 97, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
44 42 0.43
45 52 0.54
46 3 0.03
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.16
Consensus pattern (44 bp):
ACCAAGGCTCGGCATGTGCCGATGGTGGTCGAGGCAAACGCCCC
Done.