Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 23 of 120
Found at i:2591240 original size:89 final size:88
Alignment explanation
Indices: 2591078--2591245 Score: 194
Period size: 89 Copynumber: 1.9 Consensus size: 88
2591068 TCGACATGTG
* * *
2591078 CCGATGGTGGTCGAGGCAACCACCCCACCATGGCCCAGCATGTCCCGACGGTGTTCGATGCAAAC
1 CCGATGGTGGTCGAGGCAACCACCCCACCAAGGCCCAGCATGTCCCGACGGTGATCGAGGCAAAC
*
2591143 GCCCGCACCAGAGGCTGTCTTGTA
66 ACCCGCACCA-AGGCTGTCTTGTA
* * ** * * * *
2591167 CCGATGGTGGTCGAGGCAATCGCCCACACCAAGGGTCGGCATGTGCCGATGGTGATCG-GGCAAC
1 CCGATGGTGGTCGAGGCAACCACCC-CACCAAGGCCCAGCATGTCCCGACGGTGATCGAGGCAAA
*
2591231 CACCTGCACCAAGGC
65 CACCCGCACCAAGGC
2591246 CCAGCTTGTA
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
88 4 0.06
89 36 0.55
90 25 0.38
ACGTcount: A:0.21, C:0.33, G:0.30, T:0.15
Consensus pattern (88 bp):
CCGATGGTGGTCGAGGCAACCACCCCACCAAGGCCCAGCATGTCCCGACGGTGATCGAGGCAAAC
ACCCGCACCAAGGCTGTCTTGTA
Found at i:2591331 original size:134 final size:135
Alignment explanation
Indices: 2591063--2591314 Score: 294
Period size: 134 Copynumber: 1.9 Consensus size: 135
2591053 GGGGCCGACC
* * *
2591063 AGGGCTCGACATGTGCCGATGGTGGTCGAGGCAACCACCCCACCATGGCCCAGCATGTCCCGACG
1 AGGGCTCGACATGTGCCGATGGTGATCGAGGCAACCACCCCACCAAGGCCCAGCATGTACCGACG
* * * * * *
2591128 GTGTTCGATGCAAACGCCCGCACCAGAGGCTGTCTTGTACCGATGGTGGTCGAGGCAATCGCCCA
66 GCGATCGAGGCAAACGCCCGCACCAAAGGCAGTCTTGTACCGATGATGGTCGAGGCAATCGCCCA
2591193 CACCA
131 CACCA
* * * * *
2591198 AGGG-TCGGCATGTGCCGATGGTGATCG-GGCAACCACCTGCACCAAGGCCCAGCTTGTATCGAT
1 AGGGCTCGACATGTGCCGATGGTGATCGAGGCAACCACC-CCACCAAGGCCCAGCATGTACCGAC
** ** *
2591261 GGCGATCGAGGCAAGTGCCCTTACCAAAGGGCAG-CTTGTGCCGATGATGGTCGA
65 GGCGATCGAGGCAAACGCCCGCACCAAA-GGCAGTCTTGTACCGATGATGGTCGA
2591315 TGCATGCACC
Statistics
Matches: 96, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
133 10 0.10
134 78 0.81
135 8 0.08
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.17
Consensus pattern (135 bp):
AGGGCTCGACATGTGCCGATGGTGATCGAGGCAACCACCCCACCAAGGCCCAGCATGTACCGACG
GCGATCGAGGCAAACGCCCGCACCAAAGGCAGTCTTGTACCGATGATGGTCGAGGCAATCGCCCA
CACCA
Found at i:2592252 original size:26 final size:26
Alignment explanation
Indices: 2592222--2592274 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2592212 GTTGACTTAG
2592222 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
2592248 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
2592274 G
1 G
2592275 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:2593207 original size:90 final size:90
Alignment explanation
Indices: 2593113--2593319 Score: 209
Period size: 90 Copynumber: 2.3 Consensus size: 90
2593103 CTCCACGACC
* * * ** *
2593113 CAGCATGTGCCGATGGTGTTCGATGCAACCGCCTGCAAAAGGGGCCATTTTATGCCGATGGTGGT
1 CAGCATGTGCCGATGGTGATCGATGCAACCGCCCGCAAAAGGGCCCAGCTTATGCCGATGGCGGT
* *
2593178 CGAGGCAATTGCCCGCACC-AAGGG
66 CAAGGCAAGTGCCCGCACCAAAGGG
** * * * * ** *
2593202 TCAGCATGTAACGATGGTGATCAAGGTAACCTCCCGCACCAGGGCCCAGCTTGTGCCGATGGCGG
1 -CAGCATGTGCCGATGGTGATCGATGCAACCGCCCGCAAAAGGGCCCAGCTTATGCCGATGGCGG
*
2593267 TCAAGGCAAGTGCCCGTACCAAAGGG
65 TCAAGGCAAGTGCCCGCACCAAAGGG
* * *
2593293 CAGCCTGTGCCGATGATGGTCGATGCA
1 CAGCATGTGCCGATGGTGATCGATGCA
2593320 TGTACCACCA
Statistics
Matches: 90, Mismatches: 26, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
90 85 0.94
91 5 0.06
ACGTcount: A:0.22, C:0.27, G:0.32, T:0.19
Consensus pattern (90 bp):
CAGCATGTGCCGATGGTGATCGATGCAACCGCCCGCAAAAGGGCCCAGCTTATGCCGATGGCGGT
CAAGGCAAGTGCCCGCACCAAAGGG
Found at i:2594602 original size:26 final size:26
Alignment explanation
Indices: 2594573--2594625 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2594563 GTTAACATAG
* *
2594573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
*
2594599 GCATACAGAGCTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
2594625 G
1 G
2594626 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:2595135 original size:45 final size:45
Alignment explanation
Indices: 2595064--2595181 Score: 139
Period size: 45 Copynumber: 2.6 Consensus size: 45
2595054 CTGGGGCTCG
* *
2595064 GCATGTGCCGATGGTTGTT-GAGGCAACCGCCCGCACCATGGCCCA
1 GCATGTGCCGATGG-TGTTCGAGGCAACCGCCCACACCAGGGCCCA
* * * *
2595109 GCATATGCCGATGGTGTTCGATGCAACCGCCCACACTAGGGGCCA
1 GCATGTGCCGATGGTGTTCGAGGCAACCGCCCACACCAGGGCCCA
* * *
2595154 TCTTGTGCCGATGGTGGTCGAGGCAACC
1 GCATGTGCCGATGGTGTTCGAGGCAACC
2595182 ATCTGCACCA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 4 0.07
45 57 0.93
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGTTCGAGGCAACCGCCCACACCAGGGCCCA
Found at i:2595204 original size:45 final size:44
Alignment explanation
Indices: 2595067--2595224 Score: 136
Period size: 45 Copynumber: 3.5 Consensus size: 44
2595057 GGGCTCGGCA
* * * *
2595067 TGTGCCGATGGTTGTTGAGGCAACCGCCCGCACCATGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCAGCT
* * * * * *
2595112 TATGCCGATGGTGTTCGATGCAACCGCCCACACTAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA-GGGCCAGCT
** *
2595157 TGTGCCGATGGTGGTCGAGGCAACCATCTGCACCAGGGCCTAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCC-AGCT
** * *
2595202 TGTGTTGATGGCGGTTGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2595225 GTGCCCGTAC
Statistics
Matches: 88, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
44 5 0.06
45 83 0.94
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCAGCT
Found at i:2597091 original size:45 final size:45
Alignment explanation
Indices: 2597017--2597169 Score: 162
Period size: 45 Copynumber: 3.4 Consensus size: 45
2597007 CGACATGTAC
* ** * * *
2597017 CGATGGTGGTCGAGGCAACCGTTCGCACCAGGGGCCATCTTGTGT
1 CGATGGTGATCGAGGCAACCGCCCACACCAAGGGCCAGCTTGTGT
* * * * *
2597062 CGATGGTGATCGAGGCAATCTCCCACACCAAGGGCCGGCATGTAT
1 CGATGGTGATCGAGGCAACCGCCCACACCAAGGGCCAGCTTGTGT
* * * *
2597107 CGATGGTGATCGAGGCAACCGCCCACAGCAATGACCAGCTTGTGC
1 CGATGGTGATCGAGGCAACCGCCCACACCAAGGGCCAGCTTGTGT
*
2597152 CGATGGCGATCGAGGCAA
1 CGATGGTGATCGAGGCAA
2597170 GTGCCCATAC
Statistics
Matches: 87, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 87 1.00
ACGTcount: A:0.22, C:0.28, G:0.32, T:0.18
Consensus pattern (45 bp):
CGATGGTGATCGAGGCAACCGCCCACACCAAGGGCCAGCTTGTGT
Found at i:2597182 original size:90 final size:90
Alignment explanation
Indices: 2597010--2597182 Score: 204
Period size: 90 Copynumber: 1.9 Consensus size: 90
2597000 CGGGGCTCGA
* ** * * * * * *
2597010 CATGTACCGATGGTGGTCGAGGCAACCGTTCGCACCAGGGGCCATCTTGTGTCGATGGTGATCGA
1 CATGTACCGATGGTGATCGAGGCAACCGCCCACACCAAGGACCAGCTTGTGCCGATGGCGATCGA
*
2597075 GGCAATCTCCCACACCAAGGGCCGG
66 GGCAATCGCCCACACCAAGGGCCGG
* * *
2597100 CATGTATCGATGGTGATCGAGGCAACCGCCCACAGCAATGACCAGCTTGTGCCGATGGCGATCGA
1 CATGTACCGATGGTGATCGAGGCAACCGCCCACACCAAGGACCAGCTTGTGCCGATGGCGATCGA
*
2597165 GGCAAGT-GCCCATACCAA
66 GGCAA-TCGCCCACACCAA
2597183 AGGGTAACCT
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 67 0.99
91 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.30, T:0.18
Consensus pattern (90 bp):
CATGTACCGATGGTGATCGAGGCAACCGCCCACACCAAGGACCAGCTTGTGCCGATGGCGATCGA
GGCAATCGCCCACACCAAGGGCCGG
Found at i:2598300 original size:26 final size:26
Alignment explanation
Indices: 2598270--2598321 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2598260 GTTGACTCAG
* *
2598270 GCATATGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2598296 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2598322 TATCGGACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2598457 original size:26 final size:26
Alignment explanation
Indices: 2598427--2598482 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2598417 TGGGTTGACT
*
2598427 TAAGCATACGAAGTTCGTTCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
* *
2598453 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
2598479 TAAG
1 TAAG
2598483 ATCGGATCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:2600002 original size:26 final size:26
Alignment explanation
Indices: 2599965--2600017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2599955 GTTGACTTAG
2599965 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2599991 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2600017 G
1 G
2600018 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2600162 original size:196 final size:196
Alignment explanation
Indices: 2599810--2600188 Score: 440
Period size: 196 Copynumber: 1.9 Consensus size: 196
2599800 CGTAGTGCGC
* * * *
2599810 TCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGATAGTAGGACCCACAGCGGGATCGACAGCA
1 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGACCCACAGCAGGATCGACAGCA
* * * * * * * *
2599875 TACAGAGGGGATCGGGTCGATCCCCGGCTTGCGCATCCTACCTCTCTGGCCGACTGAGTGCACAC
66 CACAGAGGGGACCGGGTCGATCCCCGACGTACACATCCTACCTCTCTAGCCGACTGAGCGCACAC
*
2599940 ACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCCA-GTCTAAGCATACGGAGTTC
131 ACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT-CCCATGTCTAAGCATACGGAGTTC
2600004 AT
195 AT
* * *
2600006 TCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGA-CCAGCAGCAGGATCGACAGC
1 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGACCCA-CAGCAGGATCGACAGC
* * * * * * * *
2600070 ACGCAGGGGGGACCGGGT-GAATCCCCGACGTACACATTCTGCCTTTCTAGCTGGCTGAGCGCCC
65 ACACAGAGGGGACCGGGTCG-ATCCCCGACGTACACATCCTACCTCTCTAGCCGACTGAGCGCAC
* * * * * *
2600134 GCACGCTCATTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
129 ACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGC
2600189 CCCAGCTGGA
Statistics
Matches: 150, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
195 7 0.05
196 143 0.95
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (196 bp):
TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATAGCAGGACCCACAGCAGGATCGACAGCA
CACAGAGGGGACCGGGTCGATCCCCGACGTACACATCCTACCTCTCTAGCCGACTGAGCGCACAC
ACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATCCCATGTCTAAGCATACGGAGTTCA
T
Found at i:2601946 original size:26 final size:26
Alignment explanation
Indices: 2601894--2601946 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2601884 GTTGACTTAG
*
2601894 GCATACGAAGTTCATCCCTAGTTTAA
1 GCATACGAAGTTCATCCCTAGTCTAA
*
2601920 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGAAGTTCA-TCCCTAGTCTAA
2601946 G
1 G
2601947 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCTAGTCTAA
Found at i:2602686 original size:45 final size:45
Alignment explanation
Indices: 2602585--2602754 Score: 144
Period size: 45 Copynumber: 3.8 Consensus size: 45
2602575 AGGCTCAGCA
* * ** * * **
2602585 TGTGCCGATGGTGGTCGAGGTAACCGCCCACACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAGGGACCAGTT
* * * * * *
2602630 TGTGCCAATGGTGTTCGATGCAACCGCCCGTACTAGGGGCCA-TCT
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAGGGACCAGT-T
* *
2602675 TGTGTCGATGGTGGTCAAGGCAACCGCCTGTACCAGGGACCAGTT
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAGGGACCAGTT
* * **
2602720 TGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCA
1 TGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCA
2602755 AAGGGCAGCC
Statistics
Matches: 98, Mismatches: 25, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
45 97 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCAAGGCAACCGCCCGTACCAGGGACCAGTT
Found at i:2604079 original size:25 final size:26
Alignment explanation
Indices: 2604028--2604079 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2604018 GTTGACTTAG
2604028 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2604054 GCATAC-AGAGTTCATT-CCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
2604079 G
1 G
2604080 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2610553 original size:45 final size:45
Alignment explanation
Indices: 2610472--2610703 Score: 141
Period size: 45 Copynumber: 5.2 Consensus size: 45
2610462 ATGACACCAG
* * * * * *
2610472 CATGTGTCGATGGTGTTCGATGCAACCGCTCGCACCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAATCGCCCTCACCAAGGGCCAT
* **
2610517 CTTGTGCCGATGGTGGTCGAGGCAATCGCCCTCACCAAGGGCCGG
1 CATGTGCCGATGGTGGTCGAGGCAATCGCCCTCACCAAGGGCCAT
* * * * * *
2610562 CATGTGCCGATGGTGATCAAGGCAACCG-TCTGCA-CTAGGGCCCT
1 CATGTGCCGATGGTGGTCGAGGCAATCGCCCT-CACCAAGGGCCAT
* * * * * *
2610606 GCTTGTGCCAATGGCGGTCGAGGTAAGT-GCCCGCACCAAAGGG-CAG
1 -CATGTGCCGATGGTGGTCGAGGCAA-TCGCCCTCACC-AAGGGCCAT
* * * * * *
2610652 CCTGTGCCGATGATGGTCGATGCAAGT-GCCATCACCATGTGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAA-TCGCCCTCACCAAGGGCCAT
2610697 CATGTGC
1 CATGTGC
2610704 TATTGATGGT
Statistics
Matches: 139, Mismatches: 41, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
44 12 0.09
45 120 0.86
46 3 0.02
47 4 0.03
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAATCGCCCTCACCAAGGGCCAT
Found at i:2610625 original size:90 final size:90
Alignment explanation
Indices: 2610469--2610663 Score: 218
Period size: 90 Copynumber: 2.2 Consensus size: 90
2610459 CCCATGACAC
* * * * * *
2610469 CAGCATGTGTCGATGGTGTTCGATGCAACCGCTCGCACCAAGGGCCATCTTGTGCCGATGGTGGT
1 CAGCATGTGCCGATGGTGATCAAGGCAACCGCTCGCACCAAGGGCCATCTTGTGCCAATGGCGGT
*
2610534 CGAGGCAA-TCGCCCTCACC-AAGGG
66 CGAGGCAAGT-GCCCGCACCAAAGGG
* * *
2610558 CCGGCATGTGCCGATGGTGATCAAGGCAACCG-TCTGCA-CTAGGGCCCTGCTTGTGCCAATGGC
1 -CAGCATGTGCCGATGGTGATCAAGGCAACCGCTC-GCACCAAGGGCCAT-CTTGTGCCAATGGC
*
2610621 GGTCGAGGTAAGTGCCCGCACCAAAGGG
63 GGTCGAGGCAAGTGCCCGCACCAAAGGG
*
2610649 CAGCCTGTGCCGATG
1 CAGCATGTGCCGATG
2610664 ATGGTCGATG
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
89 10 0.11
90 72 0.82
91 6 0.07
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
CAGCATGTGCCGATGGTGATCAAGGCAACCGCTCGCACCAAGGGCCATCTTGTGCCAATGGCGGT
CGAGGCAAGTGCCCGCACCAAAGGG
Found at i:2611816 original size:26 final size:26
Alignment explanation
Indices: 2611786--2611838 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2611776 GTTGACTTAG
2611786 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
*
2611812 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGAAGTTCATTCCCAGTCTAA
2611838 G
1 G
2611839 ATCAGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATGAAGTTCATTCCCAGTCTAA
Found at i:2612405 original size:45 final size:44
Alignment explanation
Indices: 2612299--2612449 Score: 140
Period size: 45 Copynumber: 3.4 Consensus size: 44
2612289 GCATGTACTA
* * *
2612299 ATGGTGGTCGAGGCAACCACCCGCACCATGGCCCAGCATGTATCG
1 ATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTCT-G
* * * * * *
2612344 ATAGTGTTTGATGCAACCACCCGCACCAGGGGCCATCTTGTGCTG
1 ATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGT-CTG
* * * * *
2612389 ATGGTGGTCGAGGCAACCGCTCACACTAGGGCCCAGCTTGTACAG
1 ATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGT-CTG
*
2612434 ATGGTAGTCGAGGCAA
1 ATGGTGGTCGAGGCAA
2612450 GTGCCCATGT
Statistics
Matches: 83, Mismatches: 22, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
45 82 0.99
46 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.30, T:0.19
Consensus pattern (44 bp):
ATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCTTGTCTG
Found at i:2620997 original size:26 final size:26
Alignment explanation
Indices: 2620967--2621021 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
2620957 GTTAACTTAG
*
2620967 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
2620993 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
2621019 GCA
1 GCA
2621022 CACAGAAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:2621382 original size:45 final size:45
Alignment explanation
Indices: 2621285--2621396 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 45
2621275 CCGAGGCTCG
* * *
2621285 GCATGTGCCGATGGTGGTCGAGGCAATCGCCCGCACCACGGCCCA
1 GCATGTGCCGATGCTGGTCGAGGCAACCGCCCACACCACGGCCCA
* * * * *
2621330 GCATGTGCCGATGCTGTTCGATGCAACCGCCCACACTAGGGTCCA
1 GCATGTGCCGATGCTGGTCGAGGCAACCGCCCACACCACGGCCCA
* * *
2621375 TCTTGTGCCGATGGTGGTCGAG
1 GCATGTGCCGATGCTGGTCGAG
2621397 CACCAAGGGT
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (45 bp):
GCATGTGCCGATGCTGGTCGAGGCAACCGCCCACACCACGGCCCA
Found at i:2622463 original size:26 final size:26
Alignment explanation
Indices: 2622432--2622484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2622422 GTTGACTTAG
* *
2622432 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
2622458 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2622484 G
1 G
2622485 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2624010 original size:26 final size:26
Alignment explanation
Indices: 2623980--2624047 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
2623970 GTTGACTTAG
*
2623980 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
* * *
2624006 GCATATAGAGTTCATTTCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
*
2624032 GCATATGAAGTTCATT
1 GCATATGGAGTTCATT
2624048 TCCAATCTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGCCTAA
Found at i:2624048 original size:26 final size:26
Alignment explanation
Indices: 2623987--2624057 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
2623977 TAGGCATACG
* *
2623987 GAGTTCATTCCCAGCCTAAGCATATA
1 GAGTTCATTTCCAGTCTAAGCATATA
2624013 GAGTTCATTTCCAGTCTAAGCATAT-
1 GAGTTCATTTCCAGTCTAAGCATATA
*
2624038 GAAGTTCATTTCCAATCTAA
1 G-AGTTCATTTCCAGTCTAA
2624058 TATCAGACCA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 1 0.02
26 40 0.98
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (26 bp):
GAGTTCATTTCCAGTCTAAGCATATA
Found at i:2624555 original size:45 final size:45
Alignment explanation
Indices: 2624501--2624601 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 45
2624491 GGGCTCGGCA
* * ** * *
2624501 TGTGCCGATGGTAGTCGAGGCAACCGCCTGCACCAGGGGCCATCT
1 TGTGCCGATGGTAGTCAAGGCAACCACCCACACCAGGGCCCAGCT
*
2624546 TGTGCCGATGGTGGTCAAGGCAACCACCCACACCAGGGCCCAGCT
1 TGTGCCGATGGTAGTCAAGGCAACCACCCACACCAGGGCCCAGCT
*
2624591 TGTGCCAATGG
1 TGTGCCGATGG
2624602 CGGTTGAGGC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.17
Consensus pattern (45 bp):
TGTGCCGATGGTAGTCAAGGCAACCACCCACACCAGGGCCCAGCT
Found at i:2624612 original size:45 final size:45
Alignment explanation
Indices: 2624514--2624613 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 45
2624504 GCCGATGGTA
* ** * * * *
2624514 GTCGAGGCAACCGCCTGCACCAGGGGCCATCTTGTGCCGATGGTG
1 GTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCAATGGCG
*
2624559 GTCAAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCAATGGCG
1 GTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCAATGGCG
*
2624604 GTTGAGGCAA
1 GTCGAGGCAA
2624614 GTGCCCGTAC
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.21, C:0.32, G:0.32, T:0.15
Consensus pattern (45 bp):
GTCGAGGCAACCACCCACACCAGGGCCCAGCTTGTGCCAATGGCG
Found at i:2625587 original size:26 final size:26
Alignment explanation
Indices: 2625550--2625602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2625540 GTTGACTTAG
*
2625550 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
2625576 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
2625602 G
1 G
2625603 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:2627326 original size:26 final size:26
Alignment explanation
Indices: 2627291--2627343 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2627281 GTTGACTTAG
*
2627291 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGCTCATGCCCAGTCTAA
* *
2627317 GCATATGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATGCCCAGTCTAA
2627343 G
1 G
2627344 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATGCCCAGTCTAA
Found at i:2627679 original size:26 final size:26
Alignment explanation
Indices: 2627643--2627695 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2627633 GTTGACTTAG
2627643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
2627669 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2627695 G
1 G
2627696 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2628169 original size:26 final size:26
Alignment explanation
Indices: 2628133--2628185 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2628123 TTTGACTTAG
*
2628133 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2628159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2628185 G
1 G
2628186 ATCGAATAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2628792 original size:90 final size:90
Alignment explanation
Indices: 2628638--2628836 Score: 231
Period size: 90 Copynumber: 2.2 Consensus size: 90
2628628 TCCGCATGAA
* * * *
2628638 TCGATGGTGGTCGAGGCAACCGCCCGTACCACGACCTAGCATGTGCCGATGGTGTTCGATGCAAC
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCACGACCTAGCATGTGCCGACGGTGATCGAGGCAAC
* * *
2628703 TGCCCACACCAGAGGTC-ATCTTGTG
66 CGCCCACACCA-AGGCCTAGCTTGTG
* * * ** *
2628728 TCGATGGTGGTCGAAGCAATCGCCCGCACCAAG-GGTCAGCATGTGCTGACGGTGATCGAGGCAA
1 TCGATGGTGGTCGAGGCAACCGCCCGCACCACGACCT-AGCATGTGCCGACGGTGATCGAGGCAA
2628792 CCGCCCACACCAAGGCCTAGCTTGTG
65 CCGCCCACACCAAGGCCTAGCTTGTG
* *
2628818 CCGATGGCGGTCGAGGCAA
1 TCGATGGTGGTCGAGGCAA
2628837 GTGCCTTTAC
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
89 5 0.05
90 86 0.95
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (90 bp):
TCGATGGTGGTCGAGGCAACCGCCCGCACCACGACCTAGCATGTGCCGACGGTGATCGAGGCAAC
CGCCCACACCAAGGCCTAGCTTGTG
Found at i:2628818 original size:45 final size:45
Alignment explanation
Indices: 2628639--2628836 Score: 184
Period size: 45 Copynumber: 4.4 Consensus size: 45
2628629 CCGCATGAAT
** * *
2628639 CGATGGTGGTCGAGGCAACCGCCCGTACCACGACCTAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCTAGCATGTGC
* * * * * * *
2628684 CGATGGTGTTCGATGCAACTGCCCACACCAGAGGTC-ATCTTGTGT
1 CGATGGTGGTCGAGGCAACCGCCCACACCA-AGGCCTAGCATGTGC
* * * *
2628729 CGATGGTGGTCGAAGCAATCGCCCGCACCAAGG-GTCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCT-AGCATGTGC
* * * *
2628774 TGACGGTGATCGAGGCAACCGCCCACACCAAGGCCTAGCTTGTGC
1 CGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCTAGCATGTGC
*
2628819 CGATGGCGGTCGAGGCAA
1 CGATGGTGGTCGAGGCAA
2628837 GTGCCTTTAC
Statistics
Matches: 117, Mismatches: 32, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
44 3 0.03
45 111 0.95
46 3 0.03
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAACCGCCCACACCAAGGCCTAGCATGTGC
Found at i:2628849 original size:90 final size:90
Alignment explanation
Indices: 2628675--2628862 Score: 202
Period size: 90 Copynumber: 2.1 Consensus size: 90
2628665 ACCACGACCT
* * * * * * * *
2628675 AGCATGTGCCGATGGTGTTCGATGCAACTGCCCACACCAGAGGTCATCTTGTGTCGATGGTGGTC
1 AGCATGTGCCGACGGTGATCGAGGCAACCGCCCACACCAGAGGCCAGCTTGTGCCGATGGCGGTC
2628740 GAAGCAATCGCCCGCACC-AAGGGTC
66 GAAGCAATCGCCCGCACCAAAGGG-C
*
2628765 AGCATGTGCTGACGGTGATCGAGGCAACCGCCCACACCA-AGGCCTAGCTTGTGCCGATGGCGGT
1 AGCATGTGCCGACGGTGATCGAGGCAACCGCCCACACCAGAGGCC-AGCTTGTGCCGATGGCGGT
* ***
2628829 CGAGGCAAGT-GCCTTTACCAAAGGGC
65 CGAAGCAA-TCGCCCGCACCAAAGGGC
*
2628855 AGCCTGTG
1 AGCATGTG
2628863 TCGATGATGG
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
89 4 0.05
90 71 0.88
91 6 0.07
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.19
Consensus pattern (90 bp):
AGCATGTGCCGACGGTGATCGAGGCAACCGCCCACACCAGAGGCCAGCTTGTGCCGATGGCGGTC
GAAGCAATCGCCCGCACCAAAGGGC
Found at i:2629788 original size:169 final size:169
Alignment explanation
Indices: 2629502--2629947 Score: 464
Period size: 169 Copynumber: 2.6 Consensus size: 169
2629492 CCCACCTACC
* * * * * *
2629502 ACTTGATCGATCCACGACTTGCGCATCCCGCCTCTCCGGCTGGCTAAGTGCCCGCACGCACGTTT
1 ACTTGATCGATCCTCGACTTGCGCATCCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTT
* * * * * * *** * *
2629567 CATGGGTTGACTTAGGCAAACGTAGTGCACTCCCAGTCTAAGATTGGATCGGATCGAGGGTTACG
66 CGTGGGTTGACTTAGGCATACGCAGTTCA-TTCCATTCTAAGAGCAGATCGGACCGAGGGTTACA
* * *
2629632 GTAGCAGG-CC-CCTAGCGGGATCGACAGCACGCAGAGGAG
130 GCAGCAGGACCACC-AGCAGGATCGACAGCACACAGAGGAG
* * * * *
2629671 ACTTGATCGATCCTCGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCTCATTT
1 ACTTGATCGATCCTCGACTTGCGCATCCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTT
*
2629736 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCTATTCTAAGAGCAGATCGGACCGAGGGTTACA
66 CGTGGGTTGACTTAGGCATACGCAGTTCATTCC-ATTCTAAGAGCAGATCGGACCGAGGGTTACA
* * * * *
2629801 GCAGCAGGACCAGCAGCAGGATTGTCAGCACACAGGGGGG
130 GCAGCAGGACCACCAGCAGGATCGACAGCACACAGAGGAG
* ** * * * * * *
2629841 ACTGGGCCGATCCTCGACTTACGCATTCTGCCTCTCCGGCTAGTTGAGCACCCGTACACTCGTTT
1 ACTTGATCGATCCTCGACTTGCGCATCCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTT
* *
2629906 CGTGGGTTGGCTTAAGCATACGCAGTTCATTCCATGTCTAAG
66 CGTGGGTTGACTTAGGCATACGCAGTTCATTCCAT-TCTAAG
2629948 GCCCAACTGG
Statistics
Matches: 226, Mismatches: 47, Indels: 7
0.81 0.17 0.03
Matches are distributed among these distances:
168 3 0.01
169 113 0.50
170 109 0.48
171 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.23
Consensus pattern (169 bp):
ACTTGATCGATCCTCGACTTGCGCATCCTGCCTCTCCGGCTGGCTGAGCGCCCGTACGCTCGTTT
CGTGGGTTGACTTAGGCATACGCAGTTCATTCCATTCTAAGAGCAGATCGGACCGAGGGTTACAG
CAGCAGGACCACCAGCAGGATCGACAGCACACAGAGGAG
Found at i:2629983 original size:170 final size:170
Alignment explanation
Indices: 2629678--2629988 Score: 383
Period size: 170 Copynumber: 1.8 Consensus size: 170
2629668 GAGACTTGAT
* ** * * * *
2629678 CGATCCTCGGCTTGTGCATCCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCTCATTTCGTGGGT
1 CGATCCTCGACTTACGCATCCTGCCTCTCCGGCCAGCTGAGCACCCGTACACTCATTTCGTGGGT
* * * * *
2629743 TGACTTAGGCATACGGAGTTCATTCCTATTCTAAGAGCAGATCGGACCGAGGGTTACAGCAGCAG
66 TGACTTAAGCATACGCAGTTCATTCCTATTCTAAGAGCACAACGGACCGAGGGTTACAGCAACAG
2629808 GACCAGCAGCAGGATTGTCAGCACACAGGGGGGACTGGGC
131 GACCAGCAGCAGGATTGTCAGCACACAGGGGGGACTGGGC
* * * *
2629848 CGATCCTCGACTTACGCATTCTGCCTCTCCGGCTAGTTGAGCACCCGTACACTCGTTTCGTGGGT
1 CGATCCTCGACTTACGCATCCTGCCTCTCCGGCCAGCTGAGCACCCGTACACTCATTTCGTGGGT
* * * ***
2629913 TGGCTTAAGCATACGCAGTTCATTCC-ATGTCTAAG-GCCCAACTGGATCGAGGGTTGTGGCAAC
66 TGACTTAAGCATACGCAGTTCATTCCTAT-TCTAAGAGCACAAC-GGACCGAGGGTTACAGCAAC
*
2629976 GGGACCAGCAGCA
129 AGGACCAGCAGCA
2629989 TGCAGAGGGG
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
169 6 0.05
170 110 0.95
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (170 bp):
CGATCCTCGACTTACGCATCCTGCCTCTCCGGCCAGCTGAGCACCCGTACACTCATTTCGTGGGT
TGACTTAAGCATACGCAGTTCATTCCTATTCTAAGAGCACAACGGACCGAGGGTTACAGCAACAG
GACCAGCAGCAGGATTGTCAGCACACAGGGGGGACTGGGC
Found at i:2630110 original size:26 final size:26
Alignment explanation
Indices: 2630080--2630132 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2630070 GTTGACTTAG
2630080 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
2630106 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2630132 G
1 G
2630133 ATCGGACCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2630274 original size:26 final size:26
Alignment explanation
Indices: 2630244--2630294 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2630234 TGACTTAGGC
*
2630244 ATACGGAGTTCA-TCCCTAGTCTAAGT
1 ATACGGAGCTCATTCCC-AGTCTAAGT
2630270 ATACGGAGCTCATTCCCAGTCTAAG
1 ATACGGAGCTCATTCCCAGTCTAAG
2630295 ATCGAACTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGCTCATTCCCAGTCTAAGT
Found at i:2631304 original size:45 final size:45
Alignment explanation
Indices: 2631257--2631543 Score: 200
Period size: 45 Copynumber: 6.4 Consensus size: 45
2631247 GGGCTCGACA
* * * *
2631257 TGTGTCGATGGTGGTCGAGGCAACCGCCCACACCATGGCCCAACA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACT
* * * * * *
2631302 TGTGCCGATGGTGTTCGATGCAACTG-CCGTACCAAGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACT
* * * *
2631346 TGTGCCGACGGTGATTGAGGCAACCGCCCGCACCAAGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACT
* * * * ** ** * *
2631391 TGTGCCGATAGTGTTCGATGCAACCACCCATACCCGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACT
* * * * *
2631436 TGTGTCAATGGTGGACGAGGCAACCGCCCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACT
* * * * ** * * *
2631481 TATGCCGATGGCGGTCAAGGTAAGTGCCCGTACCAAAGG-GCAACC
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACC-AAGGCCCAACT
*
2631526 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2631544 TGCATGTGCC
Statistics
Matches: 180, Mismatches: 60, Indels: 4
0.74 0.25 0.02
Matches are distributed among these distances:
44 33 0.18
45 144 0.80
46 3 0.02
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAACT
Found at i:2631469 original size:90 final size:89
Alignment explanation
Indices: 2631257--2631489 Score: 288
Period size: 90 Copynumber: 2.6 Consensus size: 89
2631247 GGGCTCGACA
* * * * * *
2631257 TGTGTCGATGGTGGTCGAGGCAACCGCCCACACCATGGCCCAACATGTGCCGATGGTGTTCGATG
1 TGTGTCGATGGTGGACGAGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATAGTGTTCGATG
** *
2631322 CAACTGCCGTACCAAGGGCCATCT
66 CAACACCCATACCAAGGGCCATCT
* * *
2631346 TGTGCCGACGGT-GATTGAGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATAGTGTTCGAT
1 TGTGTCGATGGTGGA-CGAGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATAGTGTTCGAT
**
2631410 GCAACCACCCATACCCGGGGCCATCT
65 GCAA-CACCCATACCAAGGGCCATCT
* * *
2631436 TGTGTCAATGGTGGACGAGGCAACCGCCCGCACCAGGGCCCAGCTTATGCCGAT
1 TGTGTCGATGGTGGACGAGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGAT
2631490 GGCGGTCAAG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
88 1 0.01
89 57 0.47
90 61 0.50
91 2 0.02
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.18
Consensus pattern (89 bp):
TGTGTCGATGGTGGACGAGGCAACCGCCCGCACCAAGGCCCAGCTTGTGCCGATAGTGTTCGATG
CAACACCCATACCAAGGGCCATCT
Found at i:2631949 original size:26 final size:26
Alignment explanation
Indices: 2631920--2631972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2631910 GTTGACTTAG
*
2631920 GCATAC-AGAGTTCATTCCTAGTCTAA
1 GCATACGAG-GTTCATTCCCAGTCTAA
2631946 GCATACGAGGTTCATTCCCAGTCTAA
1 GCATACGAGGTTCATTCCCAGTCTAA
2631972 G
1 G
2631973 ATCGAATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAGGTTCATTCCCAGTCTAA
Found at i:2632584 original size:45 final size:44
Alignment explanation
Indices: 2632476--2632586 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 44
2632466 CGGCTTAGCA
* *
2632476 TGTGCCGATGGT-TCGATGCAATCGCCCACACCAGAGGCCATCT
1 TGTGCCGATGGTGTCGAGGCAATCGCCCACACCAGAGGCCAGCT
* * *
2632519 TGTGCCGATGGTGGTTGAGGCGATCGCCCATACCA-AGGGCCAGCT
1 TGTGCCGATGGT-GTCGAGGCAATCGCCCACACCAGA-GGCCAGCT
2632564 TGTGCCGATGGTGATCGAGGCAA
1 TGTGCCGATGGTG-TCGAGGCAA
2632587 GTGTCTGTAC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
43 12 0.21
44 2 0.04
45 43 0.75
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (44 bp):
TGTGCCGATGGTGTCGAGGCAATCGCCCACACCAGAGGCCAGCT
Found at i:2634695 original size:185 final size:186
Alignment explanation
Indices: 2634383--2634718 Score: 505
Period size: 185 Copynumber: 1.8 Consensus size: 186
2634373 CAGAGGGGAC
* * * *
2634383 CGGGTCGATCCCCGACTTGCGCATCCTGCCTCTCTGACCGGTTGAGTGCCTACACGCTCGTTTCA
1 CGGGTCGATCCCCGACTTGCGAATCCTGCCTATCTGACCGGTTGAGTGCCCACACACTCGTTTCA
* *
2634448 TGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGGATATGGAGTTCATTCCCAGTCTAA
66 TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
* *
2634513 GATTGGACCGGACCG-GGGTTTGCGGTAGCAGGACCAGTAGCACACAGGGACAGAT
131 GATCGGACCGCACCGAGGGTTTGCGGTAGCAGGACCAGTAGCACACAGGGACAGAT
* * ** * *
2634568 CGGGTCGATCCCTGACTTGCGTAAT-TTGCCTATCTGGTCGGTTGAGTGCCCGCATACTCGTTTC
1 CGGGTCGATCCCCGACTTGCG-AATCCTGCCTATCTGACCGGTTGAGTGCCCACACACTCGTTTC
*
2634632 ATGGGTTGACTTAGGCATACAGAGTTCATCCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
65 ATGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTA
*
2634697 AGATCGGATCGCACCGAGGGTT
130 AGATCGGACCGCACCGAGGGTT
2634719 ACGACAGCAA
Statistics
Matches: 133, Mismatches: 16, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
185 126 0.95
186 7 0.05
ACGTcount: A:0.20, C:0.26, G:0.27, T:0.26
Consensus pattern (186 bp):
CGGGTCGATCCCCGACTTGCGAATCCTGCCTATCTGACCGGTTGAGTGCCCACACACTCGTTTCA
TGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAA
GATCGGACCGCACCGAGGGTTTGCGGTAGCAGGACCAGTAGCACACAGGGACAGAT
Found at i:2635037 original size:26 final size:26
Alignment explanation
Indices: 2635001--2635053 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2634991 GTTGACTTAG
2635001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
2635027 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2635053 G
1 G
2635054 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2635278 original size:136 final size:136
Alignment explanation
Indices: 2635035--2635325 Score: 368
Period size: 136 Copynumber: 2.1 Consensus size: 136
2635025 AAGCATATGG
* * * *
2635035 AGTTTATTCCCAGTCTAAGATCGGACTGGCAGCAGCACGCAGAGGGGGACCGAGTCGATCCTCGG
1 AGTTCATTCTCAGTCTAAGATCAGACCGGCAGCAGCACGCAGAGGGGGACCGAGTCGATCCTCGG
* * * *
2635100 CTTACGCATCCTACCTCTCCGATCAGCTCAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGC
66 CTTACACATCCTACCTCTCCGACCAGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGC
2635165 ATACGA
131 ATACGA
* * * * * *
2635171 AGTTCATTCTCAGTCTAAGATCAGACCGGCAGTAGTACGCAGAGGGGGATCGGGTTGATCCTTGG
1 AGTTCATTCTCAGTCTAAGATCAGACCGGCAGCAGCACGCAGAGGGGGACCGAGTCGATCCTCGG
** * * * * *
2635236 CTTGTACATCCTACCTCTCTGACC-GACTGAGTGCCTGCATGCTCGTTTCATGGGTTGACTTAGG
66 CTTACACATCCTACCTCTCCGACCAG-CTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGG
*
2635300 CATACGG
130 CATACGA
2635307 AGTTCATTCTCAGTCTAAG
1 AGTTCATTCTCAGTCTAAG
2635326 CCCCAACCGA
Statistics
Matches: 132, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
135 1 0.01
136 131 0.99
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (136 bp):
AGTTCATTCTCAGTCTAAGATCAGACCGGCAGCAGCACGCAGAGGGGGACCGAGTCGATCCTCGG
CTTACACATCCTACCTCTCCGACCAGCTCAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGC
ATACGA
Found at i:2635794 original size:45 final size:44
Alignment explanation
Indices: 2635629--2635811 Score: 168
Period size: 45 Copynumber: 4.1 Consensus size: 44
2635619 CGGGGCTCGA
* ** * ** *
2635629 CATGTGCCGATGGTGGTCGAGGCAACCGTTCGCACCACGACCCAT
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCA-GGGCCAG
* * * ** *
2635674 TATGTGCCGATGGTGTTCGATGCAACCGCCTGCACCTAGGGCCAT
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACC-AGGGCCAG
* * * *
2635719 CTTGTGCCGATGGTGGTCGAGGTAACCGCCCACACCAAGGGCCGG
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACC-AGGGCCAG
*
2635764 CATGTGTCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCTAG
1 CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCC-AG
2635809 CAT
1 CAT
2635812 ATGTCAATGG
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
44 6 0.05
45 106 0.94
46 1 0.01
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.19
Consensus pattern (44 bp):
CATGTGCCGATGGTGATCGAGGCAACCGCCCACACCAGGGCCAG
Found at i:2635832 original size:45 final size:45
Alignment explanation
Indices: 2635742--2635833 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
2635732 TGGTCGAGGT
* * * * **
2635742 AACCGCCCACACCAAGGGCCGGCATGTGTCGATGGTGATCGAGGC
1 AACCGCCCACACCAAGGGCCAGCATATGTCAATGGCGATAAAGGC
*
2635787 AACCGCCCACACC-AGGGCCTAGCATATGTCAATGGCGGTAAAGGC
1 AACCGCCCACACCAAGGGCC-AGCATATGTCAATGGCGATAAAGGC
2635832 AA
1 AA
2635834 ATGCCCGTAC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 6 0.15
45 33 0.85
ACGTcount: A:0.27, C:0.30, G:0.29, T:0.13
Consensus pattern (45 bp):
AACCGCCCACACCAAGGGCCAGCATATGTCAATGGCGATAAAGGC
Found at i:2635894 original size:13 final size:13
Alignment explanation
Indices: 2635876--2635900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2635866 ATGGTCGATG
2635876 CATGTGCCATCAC
1 CATGTGCCATCAC
2635889 CATGTGCCATCA
1 CATGTGCCATCA
2635901 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2637200 original size:136 final size:134
Alignment explanation
Indices: 2636943--2637259 Score: 311
Period size: 136 Copynumber: 2.4 Consensus size: 134
2636933 CGACTGAGCC
* * * * * * *
2636943 CCCATACGCCCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCACATCTAAAAGTGGGAT
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCACATCTAAAAGTCGGAC
* * ** *
2637008 CGACAGCACGCAGAGGGGGACCGGGTCGATCTCTGGCTTGCATATTATGCCTCTCTGGTCTACTC
66 CGACAGCACGCAGAGGGGGACCGGGCCGATCTCTGGCTTACATATTATGCCTCTCTGACCGACT-
*
2637073 AG-CG
130 AGACA
** * *
2637077 CCTGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCC-CAGTCTAAGA-TCGGA
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCACA-TCTAAAAGTCGGA
* * * *
2637140 CCGATTGCAGCACGTAGAGGGGGATCGGGCCGATC-CTTGGCTTACGTATTCTAG-CTCTCTGAC
65 CCGA---CAGCACGCAGAGGGGGACCGGGCCGATCTC-TGGCTTACATATTAT-GCCTCTCTGAC
*
2637203 CGACTGGACA
125 CGACTAGACA
* * *
2637213 CCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGTAGTGCATTC
1 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
2637260 TTGGTCTCGA
Statistics
Matches: 148, Mismatches: 28, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
133 9 0.06
134 46 0.31
135 2 0.01
136 90 0.61
137 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.27, T:0.26
Consensus pattern (134 bp):
CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCACATCTAAAAGTCGGAC
CGACAGCACGCAGAGGGGGACCGGGCCGATCTCTGGCTTACATATTATGCCTCTCTGACCGACTA
GACA
Found at i:2637535 original size:45 final size:45
Alignment explanation
Indices: 2637414--2637543 Score: 147
Period size: 44 Copynumber: 2.9 Consensus size: 45
2637404 CCGGGGCTCG
* *
2637414 GCATGTGTCGATGGTTGTCGAGGCAACCGCCCGTACCAAGGCCCA
1 GCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCA
* * * *
2637459 GCAT-TGCCGATGGTGTTCGATGG-AACCGCCCGCACCAGGGGCCA
1 GCATGTGTCGATGGTGGTCGA-GGCAACCGCCCGCACCAAGGCCCA
* * * *
2637503 TCTTGTGTCAATGGTGGTCGAGGCAATCGCCCGCACCAAGG
1 GCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGG
2637544 GTTGGCATGT
Statistics
Matches: 69, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
44 35 0.51
45 34 0.49
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.18
Consensus pattern (45 bp):
GCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCA
Found at i:2637590 original size:89 final size:90
Alignment explanation
Indices: 2637417--2637599 Score: 201
Period size: 89 Copynumber: 2.0 Consensus size: 90
2637407 GGGCTCGGCA
* * * * *
2637417 TGTGTCGATGGTTGTCGAGGCAACCGCCCGTACCAAGGCCCAGCATTGCCGATGGTGTTCGATGG
1 TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATTGCCGATGGTGATCGAAGG
* *
2637482 AACCGCCCGCACCAGGGG-CCATCT
66 AACCGCCCACACCAGGGGCCCAGCT
* **** *
2637506 TGTGTCAATGGTGGTCGAGGCAATCGCCCGCACCAAGGGTTGGCATGTGCTGATGGTGATC-AAG
1 TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCAT-TGCCGATGGTGATCGAAG
*
2637570 GTAACCGCCTACACCA-GGGCCCAGCT
65 G-AACCGCCCACACCAGGGGCCCAGCT
2637596 TGTG
1 TGTG
2637600 CTGATGGAGG
Statistics
Matches: 77, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
89 44 0.57
90 33 0.43
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (90 bp):
TGTGTCAATGGTGGTCGAGGCAACCGCCCGCACCAAGGCCCAGCATTGCCGATGGTGATCGAAGG
AACCGCCCACACCAGGGGCCCAGCT
Found at i:2639226 original size:45 final size:44
Alignment explanation
Indices: 2639122--2639232 Score: 105
Period size: 45 Copynumber: 2.5 Consensus size: 44
2639112 TCGATGGTGT
* * * * * *
2639122 TCGATGCAACCGCCCGCACCGGGGGCCATCTTGTGCCAATGGTGG
1 TCGAAGCAACTGCCCGCACC-AGGGCCAGCTTATGCCAATGGCGG
* * *
2639167 TCGAGGTAACTGCCCGCACCAGGGCCTAGCTTATGCCGATGGCGG
1 TCGAAGCAACTGCCCGCACCAGGGCC-AGCTTATGCCAATGGCGG
* *
2639212 TCGAAGCAAGTGCCCGTACCA
1 TCGAAGCAACTGCCCGCACCA
2639233 AAGGGTAGCC
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
44 5 0.09
45 48 0.91
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (44 bp):
TCGAAGCAACTGCCCGCACCAGGGCCAGCTTATGCCAATGGCGG
Found at i:2639281 original size:13 final size:13
Alignment explanation
Indices: 2639263--2639287 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2639253 ATAGTCGATG
2639263 CATGTGCCATCAC
1 CATGTGCCATCAC
2639276 CATGTGCCATCA
1 CATGTGCCATCA
2639288 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2640062 original size:26 final size:26
Alignment explanation
Indices: 2640032--2640084 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2640022 GCTAACTTAG
*
2640032 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2640058 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2640084 G
1 G
2640085 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2640414 original size:333 final size:333
Alignment explanation
Indices: 2639801--2640629 Score: 936
Period size: 333 Copynumber: 2.5 Consensus size: 333
2639791 AAAACGGGCT
* *
2639801 GATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCGTGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGGTT
* * * * **
2639866 AGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGTCGAATCAAGTGTTGTGGCAGTGGG
66 GGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCAAGGGTTGTGGCAGCCGG
* * * *
2639931 ACCGACAGCACGCAGAGGGGGATCGGGTCGATCCCCAACTTACGCATTATGCCTCTTCGGCCGGC
131 ACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAACTTACGCATTATGCCTCTCCGACCGGC
** *
2639996 TCAGCACCCGCACGCTCATTTCATGGGCTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
196 TCAGCACCCGCACGCTCATTTCATGGGCTAACTTAGGCATACAAAGTTCATTCCCAATCTAAGCA
* * * * *
2640061 TACGAAGTTCATTCCCAGTCTAAGATCGGATCGGCAGTGGTATCGGCAGCAGCACACTGAGGGGG
261 AACGAAGTTCATTCCCAGTCTAAGATCGGACCGGCAGTGGGATCGGCAACAGCACACAGAGGGGG
* *
2640126 A-CTGGGTC
326 ATC-AGGCC
*** * *
2640134 GATCCCTGGCTTGCGCATTCTGCCTCTCCCACCGGTTGAGTGCTCGCACGCTCATTTCATGGGTT
1 GATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGGTT
* *
2640199 GGATTAGGCATACGGAGTTCATTCCGTGTCTAAGTCCCAGCC-AGA-CAGAGGGTTGTGGCAGCC
66 GGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGA-ATCA-AGGGTTGTGGCAGCC
* * * *
2640262 GGATCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAGCTTATGCATTATGCCTCTCCGACTG
129 GGACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAACTTACGCATTATGCCTCTCCGACCG
** ** * * * * *
2640327 GCTCAGTGCTTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCTAAG
194 GCTCAGCACCCGCACGCTCATTTCATGGGCTAACTTAGGCATACAAAGTTCATTCCCAATCTAAG
* * * **
2640392 CAAATGGAGTTCATTCCCAGTCTAAGATCGGACCGGCAGTGGGATCGGTAACAGCATGCAGAGGG
259 CAAACGAAGTTCATTCCCAGTCTAAGATCGGACCGGCAGTGGGATCGGCAACAGCACACAGAGGG
2640457 GGATCAGGCC
324 GGATCAGGCC
* * *
2640467 GAT-CCTCGGCTTACGCA-TCTTGCCTCTCTGGTCGGCTGAGTGCCCACACGCTCATTTCATGGG
1 GATCCCT-GGCTTGCGCATTC-TGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGG
** ** * ** * * ** *
2640530 TT-GACTTACACATATAGAGTTCATTCC-TGATCTAATCCCCAATCGGATCGAGGG-ACTCGCAG
64 TTGGA-TTAGGCATACGGAGTTCATTCCATG-TCTAAGCCCCAGCCGAATCAAGGGTTGTGGCAG
* * * * *
2640592 CTGGATCGACAGTACGCAGAGGGGGGTCGGGCCGATCC
127 CCGGACCGACAGCACGCAGAGGGGGATCGAGCCGATCC
2640630 TTTGCTTGTG
Statistics
Matches: 415, Mismatches: 72, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
332 51 0.12
333 362 0.87
334 2 0.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (333 bp):
GATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGTGCCCGCACGCTCATTTCATGGGTT
GGATTAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAGCCGAATCAAGGGTTGTGGCAGCCGG
ACCGACAGCACGCAGAGGGGGATCGAGCCGATCCCCAACTTACGCATTATGCCTCTCCGACCGGC
TCAGCACCCGCACGCTCATTTCATGGGCTAACTTAGGCATACAAAGTTCATTCCCAATCTAAGCA
AACGAAGTTCATTCCCAGTCTAAGATCGGACCGGCAGTGGGATCGGCAACAGCACACAGAGGGGG
ATCAGGCC
Found at i:2642514 original size:45 final size:45
Alignment explanation
Indices: 2642350--2642507 Score: 208
Period size: 45 Copynumber: 3.5 Consensus size: 45
2642340 GGGCTCGACA
* * * *
2642350 TGTGCCGATGATGGTCGAGGCAACCGCTCGCACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* * * * *
2642395 TGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
* *
2642440 TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
*
2642485 TGTGCCGATGGCGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2642508 GTGCCCGTAC
Statistics
Matches: 96, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCAGCT
Found at i:2642514 original size:90 final size:90
Alignment explanation
Indices: 2642350--2642547 Score: 227
Period size: 90 Copynumber: 2.2 Consensus size: 90
2642340 GGGCTCGACA
* * * * *
2642350 TGTGCCGATGATGGTCGAGGCAACCGCTCGCACCACGGCCCAGCATGTGTCGATGGTGTTCGATG
1 TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGCGGTCGAGG
2642415 CAACCGCCCGCACCAGGGGCCATCT
66 CAACCGCCCGCACCAGGGGCCATCT
* * * * *
2642440 TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGCCCAGCTTGTGCCGATGGCGGTCGAGG
1 TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGCGGTCGAGG
** * * * *
2642505 CAAGTGCCCGTACCAAAGGG-CAGCC
66 CAACCGCCCGCACC-AGGGGCCATCT
*
2642530 TATGCCGATGATGGTCGA
1 TGTGCCGATGATGGTCGA
2642548 TGTACGTACC
Statistics
Matches: 89, Mismatches: 18, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
90 85 0.96
91 4 0.04
ACGTcount: A:0.18, C:0.30, G:0.34, T:0.18
Consensus pattern (90 bp):
TGTGCCGATGATGGTCGAGGCAACCGCCCGCACCACGGCCCAGCATGTGCCGATGGCGGTCGAGG
CAACCGCCCGCACCAGGGGCCATCT
Found at i:2642546 original size:45 final size:44
Alignment explanation
Indices: 2642352--2642547 Score: 142
Period size: 45 Copynumber: 4.4 Consensus size: 44
2642342 GCTCGACATG
* * * * * * *
2642352 TGCCGATGATGGTCGAGGCAACCGCTCGCACCACGGCCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCA-CAAGGGCCAGCCTA
* * * * * * * *
2642397 TGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCA-CAAGGGCCAGCCTA
* * *
2642442 TGCCGATGGTGGTCGAGGCAACTGCCCGCACTAGGGCCCAGCTTG
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCACAAGGG-CCAGCCTA
* * *
2642487 TGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGG-CAGCCTA
1 TGCCGATGGTGGTCGAGGCAACTGCCCGCA-C-AAGGGCCAGCCTA
*
2642532 TGCCGATGATGGTCGA
1 TGCCGATGGTGGTCGA
2642548 TGTACGTACC
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
44 4 0.03
45 115 0.93
46 1 0.01
47 4 0.03
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (44 bp):
TGCCGATGGTGGTCGAGGCAACTGCCCGCACAAGGGCCAGCCTA
Found at i:2643467 original size:26 final size:26
Alignment explanation
Indices: 2643428--2643480 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2643418 GTTGACTTAG
*
2643428 GCATACGGAATTCACCCCCAGTCTAA
1 GCATACAGAATTCACCCCCAGTCTAA
* **
2643454 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCACCCCCAGTCTAA
2643480 G
1 G
2643481 ATTGGATCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAATTCACCCCCAGTCTAA
Found at i:2644345 original size:45 final size:44
Alignment explanation
Indices: 2644246--2644397 Score: 151
Period size: 45 Copynumber: 3.4 Consensus size: 44
2644236 GGGCTCGACA
* * * * *
2644246 TGTGCCGATGGTGGACGAGGCAATCGCCTGCATCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGA-GCAATCGCCCGCACCAGGGCCCAGCT
* * * * *
2644291 TCTGTCGATGGTGTTCGATGCAATCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGGTCGA-GCAATCGCCCGCACCAGGGCCCAGCT
*
2644336 TGTGCCGATGGTGGTCGAGTCAACCGCCCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAG-CAATCGCCCGCACCAGGGCCCAGCT
* * *
2644381 TGGGTCGATGGAGGTCG
1 TGTGCCGATGGTGGTCG
2644398 TGGTAAGTGC
Statistics
Matches: 86, Mismatches: 20, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
44 1 0.01
45 85 0.99
ACGTcount: A:0.16, C:0.30, G:0.34, T:0.19
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGCAATCGCCCGCACCAGGGCCCAGCT
Found at i:2644464 original size:13 final size:13
Alignment explanation
Indices: 2644446--2644470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2644436 ATGGTTGATG
2644446 CATGTGCCATCAC
1 CATGTGCCATCAC
2644459 CATGTGCCATCA
1 CATGTGCCATCA
2644471 TGTGCCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:2645567 original size:197 final size:196
Alignment explanation
Indices: 2645190--2645601 Score: 497
Period size: 197 Copynumber: 2.1 Consensus size: 196
2645180 CGTAGCGTGC
* * * * *
2645190 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAGCAGCAGGACCCGTAGCAGGATCGACAGCA
1 TCCCAGTCTAAGATCAGACCGGACCAAGAGTTGCAGCAGCAAGACCAGCAGCAGGATCGACAGCA
* ** * * * * *
2645255 CGCAAAGGGGATTGGGTCAATCCCCGGCTTGCGCAACTTGCTTCTCTGGCCAACTGAGTGCCCGT
66 AGCAAAGGGGACCGGGCCAATCCCCGGCTTGCACAACTTGCCTCTCTGGCCAACTCAGTGCCCGC
* ** * * *
2645320 ACGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
131 ACACTCAATTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
2645385 T
196 T
* *
2645386 TCCCAGTCTAAGATCAGACCGGATCGAA-AGTTGCGGCAGCAAGACCAGCAGCAGGATCGACAGC
1 TCCCAGTCTAAGATCAGACCGGA-CCAAGAGTTGCAGCAGCAAGACCAGCAGCAGGATCGACAGC
* * * ***
2645450 AAGCAAGGGGGGACCGGGCCGATCCCCGGCTTGCAC-ATTATGCCTCT-TCGGCTGGCTCAGTGC
65 AAGCAA-AGGGGACCGGGCCAATCCCCGGCTTGCACAACT-TGCCTCTCT-GGCCAACTCAGTGC
* * *
2645513 CCGCACACTCAATTCATGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAG
127 CCGCACACTCAATTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAG
2645578 TTCAT
192 TTCAT
2645583 TCCCAGTCTAAGATCAGAC
1 TCCCAGTCTAAGATCAGAC
2645602 TGGCAGCGGG
Statistics
Matches: 182, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
196 61 0.34
197 121 0.66
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (196 bp):
TCCCAGTCTAAGATCAGACCGGACCAAGAGTTGCAGCAGCAAGACCAGCAGCAGGATCGACAGCA
AGCAAAGGGGACCGGGCCAATCCCCGGCTTGCACAACTTGCCTCTCTGGCCAACTCAGTGCCCGC
ACACTCAATTCATGGGTTAACTTAGGCATACAGAGTTCATCCCCAGTCTAAGCATACGGAGTTCA
T
Found at i:2645572 original size:26 final size:26
Alignment explanation
Indices: 2645542--2645594 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2645532 GTTAACTTAG
*
2645542 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2645568 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2645594 G
1 G
2645595 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2645717 original size:174 final size:172
Alignment explanation
Indices: 2645457--2646067 Score: 547
Period size: 174 Copynumber: 3.6 Consensus size: 172
2645447 AGCAAGCAAG
* * * * * * ** *
2645457 GGGGGACCGGGCCGATCCCCGGCTTGCACATTATGCCTCTTCGGCTGGCTCAGTGCCCGCACACT
1 GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTCAGCACCCGCACGCT
* * *
2645522 CAATTCATGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCC
66 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACGGAGTTCATTCCC
* * *
2645587 AGTCTAAGATCAGACTGGCAGCGGGATCGACATCAGCACGCTGA
130 AGTCTAAGATCAGACTGGTAGCGGGATCG-CATCAGCATGCAGA
* * * *
2645631 GGGGGATCGGGTCGATCCCCGACTTGGGCATTCTGCCTCTCCGGCTGGCTGAGCACCCGCACGCT
1 GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTCAGCACCCGCACGCT
* * * *
2645696 CATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATTTGTAAGCCATAGCCG-G---A---
66 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-CATA-CGGAGTTCATTC
* * *
2645754 CC-G---AAGGT-TG--TGGTAGTGGGA-CTG-A-CAGCATGCAGA
128 CCAGTCTAAGATCAGACTGGTAGCGGGATC-GCATCAGCATGCAGA
* * * * * * ** *
2645790 GAGGGACCAGGTCGATCCCTGACTTACGCATTGTGCCTCTCCGACCGGCTCAGTGCCCGCATGCT
1 GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTCAGCACCCGCACGCT
* * * * * *
2645855 CGTTTTGTGGGTTCACTAAGGCATATGGAGTTCATTCCAAGTCTAAGCATATGGAGTTCATTCCC
66 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACGGAGTTCATTCCC
* *
2645920 AGTCTAAGATCAGACCGATAGCGGGATCGGCAGT-AGCATGCAGA
130 AGTCTAAGATCAGACTGGTAGCGGGATC-GCA-TCAGCATGCAGA
* * * * * *
2645964 GGGGGATCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGATTGGCTGAGCATCTGTACGCT
1 GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTCAGCACCCGCACGCT
* * *
2646029 CATTTTGTGGGTTGGCTTAGGCATATGGAGTTCATTCCA
66 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCA
2646068 TGTTTCAGCC
Statistics
Matches: 342, Mismatches: 72, Indels: 47
0.74 0.16 0.10
Matches are distributed among these distances:
157 1 0.00
158 5 0.01
159 98 0.29
160 2 0.01
161 2 0.01
162 10 0.03
164 3 0.01
165 5 0.01
168 5 0.01
169 3 0.01
171 8 0.02
172 3 0.01
173 3 0.01
174 187 0.55
175 5 0.01
176 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (172 bp):
GGGGGACCGGGTCGATCCCCGACTTGCGCATTCTGCCTCTCCGACTGGCTCAGCACCCGCACGCT
CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAGACTGGTAGCGGGATCGCATCAGCATGCAGA
Found at i:2645900 original size:27 final size:27
Alignment explanation
Indices: 2645870--2645927 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
2645860 TGTGGGTTCA
2645870 CTAAGGCATATGGAGTTCATTCCAAGT
1 CTAAGGCATATGGAGTTCATTCCAAGT
*
2645897 CTAA-GCATATGGAGTTCATTCCCAGT
1 CTAAGGCATATGGAGTTCATTCCAAGT
2645923 CTAAG
1 CTAAG
2645928 ATCAGACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (27 bp):
CTAAGGCATATGGAGTTCATTCCAAGT
Found at i:2647108 original size:26 final size:26
Alignment explanation
Indices: 2647071--2647123 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2647061 GTTGACTTAG
2647071 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
2647097 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATCCCCAGTCTAA
2647123 G
1 G
2647124 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2648804 original size:26 final size:26
Alignment explanation
Indices: 2648768--2648819 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2648758 GTTGACTTAG
2648768 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2648794 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2648820 CATCAGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2649907 original size:26 final size:26
Alignment explanation
Indices: 2649871--2649923 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2649861 GGTTGATTAG
*
2649871 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
2649897 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
2649923 G
1 G
2649924 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:2650643 original size:26 final size:26
Alignment explanation
Indices: 2650604--2650656 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2650594 GTTGACTTAG
*
2650604 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAATTCATTCCC-AGTCTAA
2650630 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
2650656 G
1 G
2650657 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:2651003 original size:159 final size:160
Alignment explanation
Indices: 2650692--2651131 Score: 510
Period size: 159 Copynumber: 2.8 Consensus size: 160
2650682 AGGAGGACTA
* * * * *
2650692 GCAGCAGGATCAGCAGTACGCA-AGGGGGACGGGGCCGAT-CTCTGACTTGCGCATTTTGCCTCT
1 GCAGCGGGATCAGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAGACTTGCGCATTATGCCTCT
* * * * *
2650755 TCGGCTGGCTAAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCAT
66 TCGGCTGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCAATCAAT
** **
2650820 GTCTAAGCCCCAGTCGGATCGAGGGTTGTG
131 GTCTAAGCCCCAACCAAATCGAGGGTTGTG
* *
2650850 GCAGTGGGATCAGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAG-CTTGCGCATTCTGCCTCT
1 GCAGCGGGATCAGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAGACTTGCGCATTATGCCTCT
* * * * * *
2650914 TCGGCCGGCTGAGCCCCCGAATGCTCGTTTCGTGGCTTGGCTTAGGCATACGGAGTTCAATCAAT
66 TCGGCTGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCAATCAAT
* *
2650979 GTCTGAGCCCCAACCAAATTGAGGGTTGTG
131 GTCTAAGCCCCAACCAAATCGAGGGTTGTG
** * * * * * * *
2651009 GCAGCGGGATTGGTAGCACGCAGAAGAGGATCGGGCTGATCC-CCGACTTGCACATTATGCCTCT
1 GCAGCGGGATCAGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAGACTTGCGCATTATGCCTCT
* * * * *
2651073 TCGGCTAGCTCAGTGCCCGCATGCTCGTTTCATGGGTTGACTTAGGAATACGGAGTTCA
66 TCGGCTGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCA
2651132 TTCCCAGTCT
Statistics
Matches: 236, Mismatches: 43, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
158 21 0.09
159 211 0.89
160 4 0.02
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (160 bp):
GCAGCGGGATCAGCAGCACGCAGAGGGGGACCGGGCCGATCCTCAGACTTGCGCATTATGCCTCT
TCGGCTGGCTAAGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGAATACGGAGTTCAATCAAT
GTCTAAGCCCCAACCAAATCGAGGGTTGTG
Found at i:2651150 original size:26 final size:26
Alignment explanation
Indices: 2651120--2651170 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
2651110 TGACTTAGGA
2651120 ATACGGAGTTCATTCCC-AGTCTAAGC
1 ATACGGAGTTCATTCCCTA-TCTAAGC
2651146 ATACGGAGTTCATTCCCTATCTAAG
1 ATACGGAGTTCATTCCCTATCTAAG
2651171 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCTATCTAAGC
Found at i:2655047 original size:45 final size:45
Alignment explanation
Indices: 2654886--2655122 Score: 180
Period size: 45 Copynumber: 5.3 Consensus size: 45
2654876 GGCATGAGCT
* ** **
2654886 GATGGTGGTCGAGGCAA-TCGCCCGTACCGTGACCCAGCTTGTGCC
1 GATGGTGGTCGAGGCAACT-GCCCGCACCAAGGGCCAGCTTGTGCC
* * * * * *
2654931 GATGATGTTCGATGG-AACCGCCTGCACCAAGGGCCATCTTGTGCT
1 GATGGTGGTCGA-GGCAACTGCCCGCACCAAGGGCCAGCTTGTGCC
* * * *
2654976 AATGGTGGTCAAGGCAA-TCGCTCGCACCAAGGGCCAGCATGTGCC
1 GATGGTGGTCGAGGCAACT-GCCCGCACCAAGGGCCAGCTTGTGCC
* *
2655021 GATGGTGATCGAGGCAACTGCCCGCACC-AGGGACTAGCTTGT-CTC
1 GATGGTGGTCGAGGCAACTGCCCGCACCAAGGG-CCAGCTTGTGC-C
* * * *
2655066 GATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGG-CAGCCTGTGCC
1 GATGGTGGTCGAGGCAACTGCCCGCACC-AAGGGCCAGCTTGTGCC
*
2655111 GATGATGGTCGA
1 GATGGTGGTCGA
2655123 TGCGTGTGCC
Statistics
Matches: 147, Mismatches: 35, Indels: 20
0.73 0.17 0.10
Matches are distributed among these distances:
44 7 0.05
45 132 0.90
46 4 0.03
47 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (45 bp):
GATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCAGCTTGTGCC
Found at i:2655062 original size:90 final size:90
Alignment explanation
Indices: 2654887--2655124 Score: 234
Period size: 90 Copynumber: 2.6 Consensus size: 90
2654877 GCATGAGCTG
** ** * *
2654887 ATGGTGGTCGAGGCAATCGCCCGTACCGTGACCCAGCTTGTGCCGATGATGTTCGATGGAACCGC
1 ATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCAGCATGTGCCGATGATGATCGATGGAACCGC
* *
2654952 CTGCACCAAGGGCCATCTTGTGCT-A
66 CCGCACCAAGGGCCAGCTTGT-CTCA
* * * * *
2654977 ATGGTGGTCAAGGCAATCGCTCGCACCAAGGGCCAGCATGTGCCGATGGTGATCGA-GGCAACTG
1 ATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCAGCATGTGCCGATGATGATCGATGG-AACCG
* *
2655041 CCCGCACC-AGGGACTAGCTTGTCTCG
65 CCCGCACCAAGGG-CCAGCTTGTCTCA
* * *
2655067 ATGGCGGTCGAGGCAAGT-GCCCGTACCAAAGGG-CAGCCTGTGCCGATGATGGTCGATG
1 ATGGTGGTCGAGGCAA-TCGCCCGTACC-AAGGGCCAGCATGTGCCGATGATGATCGATG
2655125 CGTGTGCCAT
Statistics
Matches: 120, Mismatches: 22, Indels: 11
0.78 0.14 0.07
Matches are distributed among these distances:
89 8 0.07
90 105 0.88
91 7 0.06
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (90 bp):
ATGGTGGTCGAGGCAATCGCCCGTACCAAGGGCCAGCATGTGCCGATGATGATCGATGGAACCGC
CCGCACCAAGGGCCAGCTTGTCTCA
Found at i:2656418 original size:27 final size:26
Alignment explanation
Indices: 2656380--2656433 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
2656370 GTTGACTTAG
*
2656380 GCATACGGAGTTCATTCCCCAGTCTAA
1 GCATACAGAGTTCATT-CCCAGTCTAA
*
2656407 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2656433 G
1 G
2656434 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2656988 original size:90 final size:90
Alignment explanation
Indices: 2656878--2657083 Score: 216
Period size: 90 Copynumber: 2.3 Consensus size: 90
2656868 GGGCCGACCG
* * * * * *
2656878 GGGCTCAGCATGTGTCGATGGTGGTCAAGGCGACCG-TCCGAACCATGGCCCAGCATGTACCGAT
1 GGGCCCAGCTTGTGCCGATGGTGGTCAAGGCAACCGCT-CGAACCAAGGCCCAGCATATACCGAT
* * * * *
2656942 GGTGTTCGATGCAATTGCTCGCACCA
65 GGTGATCGAGGCAACTGCCCCCACCA
* * * * * * * *
2656968 GGGGCCATCTTGTGCCGATGGTGGTCGAGGTAATCGCTCGCACCAAGGGCCAGCATATGCCGATG
1 GGGCCCAGCTTGTGCCGATGGTGGTCAAGGCAACCGCTCGAACCAAGGCCCAGCATATACCGATG
2657033 GTGATCGAGGCAACTGCCCCCACCA
66 GTGATCGAGGCAACTGCCCCCACCA
*
2657058 GGGCCCAGCTTGTGCCGATGGCGGTC
1 GGGCCCAGCTTGTGCCGATGGTGGTC
2657084 GAGGGAAGTG
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
90 92 0.99
91 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
GGGCCCAGCTTGTGCCGATGGTGGTCAAGGCAACCGCTCGAACCAAGGCCCAGCATATACCGATG
GTGATCGAGGCAACTGCCCCCACCA
Found at i:2657084 original size:90 final size:90
Alignment explanation
Indices: 2656927--2657121 Score: 241
Period size: 90 Copynumber: 2.2 Consensus size: 90
2656917 GAACCATGGC
* * * * * * * * *
2656927 CCAGCATGTACCGATGGTGTTCGATGCAATTGCTCGCACCAGGGGCCATCTTGTGCCGATGGTGG
1 CCAGCATGTGCCGATGGTGATCGAGGCAACTGCCCCCACCAGGGCCCAGCTTGTGCCGATGGCGG
* *
2656992 TCGAGGTAA-TCGCTCGCACCAAGGG
66 TCGAGGGAAGT-GCCCGCACCAAGGG
*
2657017 CCAGCATATGCCGATGGTGATCGAGGCAACTGCCCCCACCAGGGCCCAGCTTGTGCCGATGGCGG
1 CCAGCATGTGCCGATGGTGATCGAGGCAACTGCCCCCACCAGGGCCCAGCTTGTGCCGATGGCGG
*
2657082 TCGAGGGAAGTGCCCGTACCAAGGG
66 TCGAGGGAAGTGCCCGCACCAAGGG
*
2657107 -CAGCCTGTGCCGATG
1 CCAGCATGTGCCGATG
2657122 ATGGTCGATG
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
89 13 0.15
90 75 0.84
91 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.18
Consensus pattern (90 bp):
CCAGCATGTGCCGATGGTGATCGAGGCAACTGCCCCCACCAGGGCCCAGCTTGTGCCGATGGCGG
TCGAGGGAAGTGCCCGCACCAAGGG
Found at i:2657128 original size:44 final size:44
Alignment explanation
Indices: 2656878--2657129 Score: 193
Period size: 45 Copynumber: 5.6 Consensus size: 44
2656868 GGGCCGACCG
* * ** * * *
2656878 GGGCTCAGCATGTGTCGATGGTGGTCAAGGCGACCGTCCGAACCAT
1 GGGC-CAGCATGTGCCGATGGTGGTCGAGGC-AATGCCCGCACCAA
* * * * * *
2656924 GGCCCAGCATGTACCGATGGTGTTCGATGCAATTGCTCGCACCAG
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAA-TGCCCGCACCAA
* * * *
2656969 GGGCCATCTTGTGCCGATGGTGGTCGAGGTAATCGCTCGCACCAA
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAAT-GCCCGCACCAA
* * *
2657014 GGGCCAGCATATGCCGATGGTGATCGAGGCAACTGCCCCCACC-A
1 GGGCCAGCATGTGCCGATGGTGGTCGAGGCAA-TGCCCGCACCAA
* * * *
2657058 GGGCCCAGCTTGTGCCGATGGCGGTCGAGGGAAGTGCCCGTACCAA
1 GGG-CCAGCATGTGCCGATGGTGGTCGAGGCAA-TGCCCGCACCAA
* *
2657104 GGG-CAGCCTGTGCCGATGATGGTCGA
1 GGGCCAGCATGTGCCGATGGTGGTCGA
2657130 TGCATGTGCC
Statistics
Matches: 163, Mismatches: 38, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
44 26 0.16
45 129 0.79
46 8 0.05
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (44 bp):
GGGCCAGCATGTGCCGATGGTGGTCGAGGCAATGCCCGCACCAA
Found at i:2658221 original size:26 final size:26
Alignment explanation
Indices: 2658191--2658246 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2658181 TGGGTTGACT
* *
2658191 TAAGCATACAAAGTTCATTCCTAGTC
1 TAAGCATACAAAGCTCATTCCCAGTC
*
2658217 TAAGCATACAGAGCTCATTCCCAGTC
1 TAAGCATACAAAGCTCATTCCCAGTC
2658243 TAAG
1 TAAG
2658247 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (26 bp):
TAAGCATACAAAGCTCATTCCCAGTC
Found at i:2658797 original size:45 final size:45
Alignment explanation
Indices: 2658717--2658859 Score: 164
Period size: 45 Copynumber: 3.2 Consensus size: 45
2658707 TGATAGTGGC
** * * *
2658717 CGAGGCAACCGCCCAAACCACGGCCCAGCATGTGCCGATGGTGTT
1 CGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCAATGGTGTT
* * *
2658762 CGATGCAACC-CCCTGCACCAGGGGCCATCTTGTGCCAATGGTGGTT
1 CGAGGCAACCGCCC-GCACCAGGGCCCAGCTTGTGCCAATGGT-GTT
* *
2658808 -GAGGCAACCGCCCGCACCAGGGCCCAGCTTATGCCAATGGTGGT
1 CGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCAATGGTGTT
2658852 CGAGGCAA
1 CGAGGCAA
2658860 GTGCCCATAC
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
44 5 0.06
45 70 0.86
46 6 0.07
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (45 bp):
CGAGGCAACCGCCCGCACCAGGGCCCAGCTTGTGCCAATGGTGTT
Found at i:2659850 original size:26 final size:26
Alignment explanation
Indices: 2659800--2659852 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2659790 GTTGACTTAG
* *
2659800 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
2659826 GCATACGAAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
2659852 G
1 G
2659853 ATCTGATCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:2660318 original size:136 final size:136
Alignment explanation
Indices: 2660059--2660308 Score: 351
Period size: 136 Copynumber: 1.8 Consensus size: 136
2660049 AGCGGGACCG
* * * * *
2660059 GCAGCACGCAGAGGGGGATCGAGCCAATGCCCTGCTTGCGCATTATGCCTCTCTAGTTGGGTCAA
1 GCAGCACACAGAGGGGGATCGAGCCAATGCCCAGCTTGCGCATCATGCCTCTCCAGTTGGCTCAA
* *
2660124 TGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAAACTAAGATCGGA
66 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAACTAAGATCGGA
2660189 TCGGCA
131 TCGGCA
* * * *
2660195 GCAGCACACAGAGGGGGATCGGGCCAAT-CTTCAGCTTGCGCATCCA-GCTTCTCCAGTTGGCTG
1 GCAGCACACAGAGGGGGATCGAGCCAATGC-CCAGCTTGCGCAT-CATGCCTCTCCAGTTGGCTC
* *
2660258 AGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTC
64 AATGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
2660309 TCGGTCTAAG
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
135 1 0.01
136 97 0.98
137 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (136 bp):
GCAGCACACAGAGGGGGATCGAGCCAATGCCCAGCTTGCGCATCATGCCTCTCCAGTTGGCTCAA
TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAAACTAAGATCGGA
TCGGCA
Found at i:2660702 original size:45 final size:44
Alignment explanation
Indices: 2660622--2660726 Score: 120
Period size: 45 Copynumber: 2.4 Consensus size: 44
2660612 CGAGGCTCGA
* * *
2660622 CATGAGCCGATGGTGGTCGAGGCACCGCCCGCACCATGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCACCGCCCACACCAAGGCCCAG
* * * *
2660666 CATGTGCCGATGGTGTTCGATGCAACCGCCCACACCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGC-ACCGCCCACACCAAGGCCCAG
* *
2660711 CTTGTGGCGATGGTGG
1 CATGTGCCGATGGTGG
2660727 CCATCTTGTG
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 20 0.40
45 30 0.60
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.17
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCACCGCCCACACCAAGGCCCAG
Found at i:2660730 original size:20 final size:20
Alignment explanation
Indices: 2660705--2660746 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
2660695 CCACACCAAG
2660705 GGCCATCTTGTGGC-GATGGT
1 GGCCATCTTGT-GCTGATGGT
2660725 GGCCATCTTGTGCTGATGGT
1 GGCCATCTTGTGCTGATGGT
2660745 GG
1 GG
2660747 TCGAGGTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.10, C:0.19, G:0.40, T:0.31
Consensus pattern (20 bp):
GGCCATCTTGTGCTGATGGT
Found at i:2666128 original size:26 final size:26
Alignment explanation
Indices: 2666092--2666144 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2666082 GTTGACTTAG
2666092 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2666118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2666144 G
1 G
2666145 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2666477 original size:26 final size:26
Alignment explanation
Indices: 2666447--2666499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2666437 GTTGACTTAG
*
2666447 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2666473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2666499 G
1 G
2666500 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2667138 original size:26 final size:26
Alignment explanation
Indices: 2667108--2667160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2667098 GTTGACTTAG
2667108 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
2667134 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2667160 G
1 G
2667161 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2668091 original size:45 final size:45
Alignment explanation
Indices: 2667954--2668151 Score: 173
Period size: 45 Copynumber: 4.4 Consensus size: 45
2667944 GAGCTTGGCA
* * * *
2667954 TGTGCAGATGGTGGTCGAGGCAACCACCCACACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCT
* * ** ** * *
2667999 TGTGCCGATGGTGTTCGATGCAGTCACTTGCACCAGGGACCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCT
* * *
2668044 TGTGCCGATGGTGGTTGAGGCAACCGCCCGCACTAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCT
* *** * * *
2668089 TGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGG-CCAGCC
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACC-AGGGCCCAGCT
*
2668134 TGTGCCGATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
2668152 TGCATGTGCC
Statistics
Matches: 119, Mismatches: 33, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
45 116 0.97
46 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAGGGCCCAGCT
Found at i:2669090 original size:25 final size:26
Alignment explanation
Indices: 2669052--2669101 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
2669042 GTTTACTTAG
*
2669052 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
2669078 GCATAC-GAGTTCATTCCCAATCTA
1 GCATACGGAGTTCATCCCCAATCTA
2669102 TGATCGAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:2669981 original size:45 final size:45
Alignment explanation
Indices: 2669903--2670070 Score: 192
Period size: 45 Copynumber: 3.7 Consensus size: 45
2669893 GGGCGGACCG
* *
2669903 GGGCTCAACATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCA
1 GGGCCCAACATGTGCCGATGGTGGTCGATGCAACCGCCCGCACCA
* * * *
2669948 CGGCCCAACATGTACCGATGGTGTTCGATGCAACCGCCCACACCA
1 GGGCCCAACATGTGCCGATGGTGGTCGATGCAACCGCCCGCACCA
* * * **
2669993 GGGGCCATCTTGTGCCGATGGTGGTCGATGCAACCGTTCGCACCA
1 GGGCCCAACATGTGCCGATGGTGGTCGATGCAACCGCCCGCACCA
* * * * *
2670038 GGGCCTAGCTTGTGCCGATGGCGGTCGAGGCAA
1 GGGCCCAACATGTGCCGATGGTGGTCGATGCAA
2670071 GTGCCCGTAC
Statistics
Matches: 103, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 103 1.00
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (45 bp):
GGGCCCAACATGTGCCGATGGTGGTCGATGCAACCGCCCGCACCA
Found at i:2671207 original size:19 final size:20
Alignment explanation
Indices: 2671169--2671213 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
2671159 GTGCCCATAC
2671169 TGCCCGTACCAAAGGGCAAG
1 TGCCCGTACCAAAGGGCAAG
2671189 TGCCCGTACCAAA-GGCAAG
1 TGCCCGTACCAAAGGGCAAG
*
2671208 TCCCCG
1 TGCCCG
2671214 ACTTGCGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.27, C:0.36, G:0.27, T:0.11
Consensus pattern (20 bp):
TGCCCGTACCAAAGGGCAAG
Found at i:2671466 original size:26 final size:26
Alignment explanation
Indices: 2671436--2671488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2671426 GTTGACTTAG
2671436 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
2671462 GCATATAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2671488 G
1 G
2671489 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2671999 original size:45 final size:45
Alignment explanation
Indices: 2671931--2672088 Score: 199
Period size: 45 Copynumber: 3.5 Consensus size: 45
2671921 GGGCTCGATA
* * * * * *
2671931 TGTGCCGATGATGGTTGAGGCAACCGCCTGCACCATGGCCCAGCA
1 TGTGCTGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCT
* * * * *
2671976 TGTGCTGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCT
1 TGTGCTGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCT
*
2672021 TGTGCCGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCT
1 TGTGCTGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCT
*
2672066 TGTGCTGATGGCGGTCGAGGCAA
1 TGTGCTGATGGTGGTCGAGGCAA
2672089 GTGCCCATAC
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 94 1.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCTGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCT
Found at i:2672115 original size:90 final size:90
Alignment explanation
Indices: 2671931--2672125 Score: 212
Period size: 90 Copynumber: 2.2 Consensus size: 90
2671921 GGGCTCGATA
* * * * * * *
2671931 TGTGCCGATGATGGTTGAGGCAACCGCCTGCACCATGGCCCAGCATGTGCTGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCATGTGCTGATGGCGGTCGAGG
* * * *
2671996 CAACCACCCGCACCAGGGGCCATCT
66 CAACCACCCACACCAAGGGCCAGCC
*
2672021 TGTGCCGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCTTGTGCTGATGGCGGTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCATGTGCTGATGGCGGTCGAGG
*** * *
2672086 CAAGTGCCCATACCAAAGGG-TAGCC
66 CAACCACCCACACC-AAGGGCCAGCC
*
2672111 TGTGCCAATGGTGGT
1 TGTGCCGATGGTGGT
2672126 TGATGCATGT
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 82 0.95
91 4 0.05
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCTGCACCAGGGCCCAGCATGTGCTGATGGCGGTCGAGG
CAACCACCCACACCAAGGGCCAGCC
Found at i:2679688 original size:45 final size:45
Alignment explanation
Indices: 2679543--2679700 Score: 156
Period size: 45 Copynumber: 3.5 Consensus size: 45
2679533 GCACTCGGTA
* * *
2679543 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCACGGCCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACTAGGGCCCAGCT
* * * * * * *
2679588 TGCGCCAATGGTGCTCGATGCAACCGCCCGCA-TCGGGGGCCATCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACT-AGGGCCCAGCT
* * * *
2679633 TATGCAGATGGTGGTCGAGGCAACTGCTCGCACTAGGGCCCAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACTAGGGCCCAGCT
* *
2679678 TGTGTCGATGGCGGTCGAGGCAA
1 TGTGCCGATGGTGGTCGAGGCAA
2679701 GTGCCCATGT
Statistics
Matches: 86, Mismatches: 25, Indels: 4
0.75 0.22 0.03
Matches are distributed among these distances:
45 85 0.99
46 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.34, T:0.17
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGCACTAGGGCCCAGCT
Found at i:2685186 original size:26 final size:26
Alignment explanation
Indices: 2685150--2685202 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2685140 CCAAGGCCTG
2685150 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
*
2685176 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
2685202 G
1 G
2685203 ATCAGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:2685344 original size:26 final size:26
Alignment explanation
Indices: 2685314--2685364 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2685304 TGACTTAGGA
**
2685314 ATACGGAGTTCATTCCTGGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
2685340 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
2685365 ATCGGACAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:2685663 original size:26 final size:26
Alignment explanation
Indices: 2685627--2685679 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2685617 GTTGACTTAG
*
2685627 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2685653 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2685679 G
1 G
2685680 ATCGGTTCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2685838 original size:173 final size:173
Alignment explanation
Indices: 2685583--2686001 Score: 482
Period size: 173 Copynumber: 2.4 Consensus size: 173
2685573 GGCTGATCTT
* * *
2685583 CGGTGGGCTCAGCACCCGTATGCTCATTTCGGGGGTTGACTTAGGCATACGGAGTTCATT-CTCA
1 CGGTTGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTC-
* * *** *
2685647 ATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGTTCGACAACAGGATCAGCAGCAGCACG
65 GTCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCGAACCGACAACAAGATCAGCAGCAGCACG
* * * * *
2685712 TAGAGGGGGACC-GACCGATCCCCGACTTGTGCATTATGCCTCTC
130 CAGAGGGGGACCGGA-CAATCCCCGACTTGCGCATCATACCTCTC
* * *
2685756 CGGTTGGCTCAGCGCCCGTACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCTCG
1 CGGTTGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTCG
* * * * ** * *
2685821 TCTAAGCGTAAGGAGTTCATTCTCAGTCTGAGATCGAACCGGTAGCAAGATCGGCAGCAGCACGC
66 TCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCGAACCGACAACAAGATCAGCAGCAGCACGC
* * * *
2685886 AGAGGGGGACCGGGACAATCCTCGGCTTGCGTATCCTACCTCTC
131 AGAGGGGGACC-GGACAATCCCCGACTTGCGCATCATACCTCTC
* * * * * *
2685930 TGGCTGACTGAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTGG
1 CGGTTGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTCG
2685995 TCTAAGC
66 TCTAAGC
2686002 CCCAACCGGA
Statistics
Matches: 205, Mismatches: 38, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
173 116 0.57
174 87 0.42
175 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (173 bp):
CGGTTGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTCG
TCTAAGCATAAGGAGTTCATTCCCAATCTAAGATCGAACCGACAACAAGATCAGCAGCAGCACGC
AGAGGGGGACCGGACAATCCCCGACTTGCGCATCATACCTCTC
Found at i:2688163 original size:43 final size:43
Alignment explanation
Indices: 2688068--2688221 Score: 173
Period size: 45 Copynumber: 3.5 Consensus size: 43
2688058 AGGGCTCGAA
**
2688068 TTGTGCCGATGGTGGTCGAGGCAACCATCCGCACCACAGCCCAAC
1 TTGTGCCGATGGTGGTCGAGGCAACC--CCGCACCAGGGCCCAAC
* * * *
2688113 TTGTGCCGATGGTGTTCGATGCAACCCCGCACCAGGGGCCATC
1 TTGTGCCGATGGTGGTCGAGGCAACCCCGCACCAGGGCCCAAC
* ** *
2688156 TTATGCCGATGGTGGTCGAGGTGACTGCCCGTACCAGGGCCCAAC
1 TTGTGCCGATGGTGGTCGAGGCAAC--CCCGCACCAGGGCCCAAC
*
2688201 TTGTGCCGATGGTGATCGAGG
1 TTGTGCCGATGGTGGTCGAGG
2688222 TAAGTGCCCG
Statistics
Matches: 91, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 33 0.36
45 58 0.64
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (43 bp):
TTGTGCCGATGGTGGTCGAGGCAACCCCGCACCAGGGCCCAAC
Found at i:2688249 original size:45 final size:44
Alignment explanation
Indices: 2688108--2688255 Score: 149
Period size: 45 Copynumber: 3.3 Consensus size: 44
2688098 GCACCACAGC
* * * *
2688108 CCAACTTGTGCCGATGGTGTTCGATGCAAC--CCCGCACCAGGGG
1 CCAACTTGTGCCGATGGTGATCGAGGTAACTGCCCGTACCA-GGG
* * * *
2688151 CCATCTTATGCCGATGGTGGTCGAGGTGACTGCCCGTACCAGGG
1 CCAACTTGTGCCGATGGTGATCGAGGTAACTGCCCGTACCAGGG
*
2688195 CCCAACTTGTGCCGATGGTGATCGAGGTAAGTGCCCGTACCAAAGGG
1 -CCAACTTGTGCCGATGGTGATCGAGGTAACTGCCCGTACC--AGGG
*
2688242 -CAGCTTGTGCCGAT
1 CCAACTTGTGCCGAT
2688256 CATGGTCGAT
Statistics
Matches: 87, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
43 24 0.28
44 3 0.03
45 56 0.64
47 4 0.05
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (44 bp):
CCAACTTGTGCCGATGGTGATCGAGGTAACTGCCCGTACCAGGG
Found at i:2689530 original size:26 final size:26
Alignment explanation
Indices: 2689494--2689545 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2689484 GTTGACTTAG
*
2689494 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2689520 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
2689546 CATTGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:2689932 original size:45 final size:45
Alignment explanation
Indices: 2689883--2689988 Score: 115
Period size: 45 Copynumber: 2.4 Consensus size: 45
2689873 GCATGCGTTG
* * * *
2689883 ATGGTGTTCGATGCAACCGCCCGCACCAAGGGCCGGCATGTGCCA
1 ATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCA
* * * *
2689928 ATGGTGATT-GAGGCAACCACTCGCACCGAGGCCCAGCTTGTGCCG
1 ATGGTG-TTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCA
*
2689973 ATGGTGGTCGAGGCAA
1 ATGGTGTTCGAGGCAA
2689989 GTGCCCGTAC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
44 1 0.02
45 47 0.94
46 2 0.04
ACGTcount: A:0.21, C:0.29, G:0.33, T:0.17
Consensus pattern (45 bp):
ATGGTGTTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCA
Found at i:2690991 original size:170 final size:170
Alignment explanation
Indices: 2690709--2691115 Score: 500
Period size: 170 Copynumber: 2.4 Consensus size: 170
2690699 GCACATACCG
* * *
2690709 CCTCTCTGACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTGCAC
1 CCTCTCTGACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * ** * **
2690774 TCCCAGTCTAAGATCAAACTGGATCGGGGGTTACGGTAGTAGGACCAGTAGCGGGATCGACAGCA
66 TCCCAATCTAAGATCAAACTGGATCGAGGGTTACGGCAACAGGACCAGCAGCAAGATCGACAGCA
* ** *
2690839 TGTAG-AGTGGACTAG-GTCGATCTCC-GACTTGTGCATCCTA
131 TGTAGAAG-AGA-TAGACCCGATC-CCTGACTTGCGCATCCTA
**
2690879 CCTCTCTGACCGGCTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCTGACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
2690944 TCCCAATCTAAGATCAGA-TCGGATCGAGGGTTGCGGCAACAGGACCAGCAGCAAGATCGACAGC
66 TCCCAATCTAAGATCAAACT-GGATCGAGGGTTACGGCAACAGGACCAGCAGCAAGATCGACAGC
* * *
2691008 ATGTAGAAGAGATCGACCCGATCCCTGGCTTGCGCATTCTA
130 ATGTAGAAGAGATAGACCCGATCCCTGACTTGCGCATCCTA
* * * **
2691049 CCTCTCCGACCGGCTGAGTGCCCGCACGCTCGTTTTGTGGGTTGGTTTAGGCATACGGAG-TCAT
1 CCTCTCTGACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
2691113 TCC
66 TCC
2691116 ATGTCTAAGC
Statistics
Matches: 204, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
169 12 0.06
170 190 0.93
171 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.24
Consensus pattern (170 bp):
CCTCTCTGACCGGCTAAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAATCTAAGATCAAACTGGATCGAGGGTTACGGCAACAGGACCAGCAGCAAGATCGACAGCA
TGTAGAAGAGATAGACCCGATCCCTGACTTGCGCATCCTA
Found at i:2691820 original size:45 final size:45
Alignment explanation
Indices: 2691751--2691967 Score: 204
Period size: 45 Copynumber: 4.8 Consensus size: 45
2691741 GAGGCTCGGT
*
2691751 ATGTGCCGATGGTGGTT-GAGGCAACTGCCCGCACCACGGCCCAGC
1 ATGTGCCGATGGT-GTTCGAGGCAACTGCCCGCACCAAGGCCCAGC
* * * *
2691796 ATGTGCCGATGGTGTTCGATGCAACCGCCCGCACCAAGGGCCATC
1 ATGTGCCGATGGTGTTCGAGGCAACTGCCCGCACCAAGGCCCAGC
* ** * **
2691841 TTGTGCCGATGGTGGTT-GAGGCAGTTGCCCACACCAAGGGTCAGC
1 ATGTGCCGATGGT-GTTCGAGGCAACTGCCCGCACCAAGGCCCAGC
* * * * * *
2691886 ATGTGCTGATGGTGATCGAGGCAACCGCTCACACCAGGGCCCAGC
1 ATGTGCCGATGGTGTTCGAGGCAACTGCCCGCACCAAGGCCCAGC
* * * * *
2691931 TTGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAA
1 ATGTGCCGATGGTGTTCGAGGCAACTGCCCGCACCAA
2691968 AGGGCAGCCT
Statistics
Matches: 136, Mismatches: 33, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
44 5 0.04
45 128 0.94
46 3 0.02
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
ATGTGCCGATGGTGTTCGAGGCAACTGCCCGCACCAAGGCCCAGC
Found at i:2691967 original size:90 final size:89
Alignment explanation
Indices: 2691752--2691975 Score: 272
Period size: 90 Copynumber: 2.5 Consensus size: 89
2691742 AGGCTCGGTA
* * * * *
2691752 TGTGCCGATGGTGGTTGAGGCAACTGCCCGCACCACGGCCCAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTTGAGGCAAGTGCCCGCACCAAGG-GCAGCATGTGCCGATGGTGATCGAGG
* *
2691817 CAACCGCCCGCACCAAGGGCCATCT
65 CAACCGCCCACACCAAGGGCCAGCT
* *
2691842 TGTGCCGATGGTGGTTGAGGC-AGTTGCCCACACCAAGGGTCAGCATGTGCTGATGGTGATCGAG
1 TGTGCCGATGGTGGTTGAGGCAAG-TGCCCGCACCAAGGG-CAGCATGTGCCGATGGTGATCGAG
*
2691906 GCAACCGCTCACACC-AGGGCCCAGCT
64 GCAACCGCCCACACCAAGGG-CCAGCT
* * *
2691932 TGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGGCAGC
1 TGTGCCGATGGTGGTTGAGGCAAGTGCCCGCACC-AAGGGCAGC
2691976 CTATGTCGAT
Statistics
Matches: 115, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
89 5 0.04
90 103 0.90
91 7 0.06
ACGTcount: A:0.19, C:0.30, G:0.33, T:0.17
Consensus pattern (89 bp):
TGTGCCGATGGTGGTTGAGGCAAGTGCCCGCACCAAGGGCAGCATGTGCCGATGGTGATCGAGGC
AACCGCCCACACCAAGGGCCAGCT
Found at i:2692928 original size:26 final size:26
Alignment explanation
Indices: 2692892--2692944 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2692882 GTTGACTTAG
2692892 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
2692918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
2692944 G
1 G
2692945 ATGGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:2696285 original size:26 final size:26
Alignment explanation
Indices: 2696249--2696299 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2696239 TGACTTAGGC
* *
2696249 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACAGAGTTCATCCCCAATCTAAGT
*
2696275 ATACAGAGTTCATTCCCAATCTAAG
1 ATACAGAGTTCATCCCCAATCTAAG
2696300 ATCGAACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATCCCCAATCTAAGT
Found at i:2696637 original size:26 final size:26
Alignment explanation
Indices: 2696601--2696653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2696591 GTTGACTTAG
*
2696601 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
2696627 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2696653 G
1 G
2696654 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2698231 original size:26 final size:26
Alignment explanation
Indices: 2698194--2698246 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2698184 GCTGACTTAG
2698194 GCATACGAAGTT-AATCCCTAGTCTAA
1 GCATACGAAGTTCAATCCC-AGTCTAA
* *
2698220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
2698246 G
1 G
2698247 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:2698585 original size:26 final size:26
Alignment explanation
Indices: 2698549--2698601 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
2698539 GTTGACATAG
2698549 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2698575 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2698601 G
1 G
2698602 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2698746 original size:26 final size:26
Alignment explanation
Indices: 2698710--2698762 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2698700 GTTGACTTAG
2698710 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
2698736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2698762 G
1 G
2698763 ATTGAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:2698782 original size:161 final size:162
Alignment explanation
Indices: 2698519--2698870 Score: 437
Period size: 161 Copynumber: 2.2 Consensus size: 162
2698509 CTGCTTAGCG
* *
2698519 CCCGCACGCTCCTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
* * * * * *
2698584 GTTCATTCCCAGTCTAAGATCAGATCGGTATCAGCACG-TAAAGGGTACCAGACTGATCCTCGG-
66 GTTCATTCCCAGTCTAAGATCAGACCGATAACAGCACGCAAAAGGGGACCAGACCGATCCTCGGC
* **
2698647 TT-TACATATCCTACCTCTCCGGTC-GACTGAGCA
131 TTGTAC--ATCCTACCTATCCGACCAG-CTGAGCA
* *
2698680 CCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGA
* * * * *
2698744 AGTTCATTCCCAGTCTAAGAT-TGAACCGATAACAGCACGCAAAAGGGGATCGGGCCGATCCTTG
65 AGTTCATTCCCAGTCTAAGATCAG-ACCGATAACAGCACGCAAAAGGGGACCAGACCGATCCTCG
* *
2698808 GCTTGTGCATCCTGCCTATCCGACCAGCTGAGCA
129 GCTTGTACATCCTACCTATCCGACCAGCTGAGCA
2698842 CCCGCACGCTCGTTTCGTGGGTTGACTTA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTA
2698871 ACATACGCGA
Statistics
Matches: 164, Mismatches: 21, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
160 2 0.01
161 91 0.55
162 66 0.40
163 3 0.02
164 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (162 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCTAAGATCAGACCGATAACAGCACGCAAAAGGGGACCAGACCGATCCTCGGC
TTGTACATCCTACCTATCCGACCAGCTGAGCA
Found at i:2700459 original size:45 final size:45
Alignment explanation
Indices: 2700388--2700548 Score: 178
Period size: 45 Copynumber: 3.6 Consensus size: 45
2700378 TCAAGGCTCG
* **
2700388 GCATGTGTCGATGGTGGTCGAGGCAACCGCCCGCACCATAGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * * * *
2700433 GCATGTGCCGATGGTGTTTGATGCAACCGCCTGAACCAGGGGCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * * *
2700478 TCTTGTGTCGATGGTGGTCGAGGCAATCGCCCGCACCAGGGCCCA
1 GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
* * *
2700523 GCTTGTGCCGATGGCGGTCAAGGCAA
1 GCATGTGCCGATGGTGGTCGAGGCAA
2700549 GTGCTCGTAC
Statistics
Matches: 93, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.19, C:0.29, G:0.34, T:0.19
Consensus pattern (45 bp):
GCATGTGCCGATGGTGGTCGAGGCAACCGCCCGCACCAGGGCCCA
Found at i:2701995 original size:628 final size:625
Alignment explanation
Indices: 2700787--2702001 Score: 1785
Period size: 628 Copynumber: 1.9 Consensus size: 625
2700777 GGGGGGGCCA
2700787 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTAGCCCTCATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTAGCCCTCATATTGGCCCCCTATCCC
* * * *
2700852 TCGTCAAACCTCGAGAACTCACACCCCCCTTAAAGGGCATTTGACATTTTATAGGTTTGCTCCCA
66 TCATCAAACCTCAAGAACT-ACACCCCCCTTAAAGAGAATTTGACATTTTATAGGTTTGCTCCCA
* *
2700917 GTATCCATTAAAGTGTCTAAAATAGGGACATTTTTATCAAACGGTCACAAAATCTTCTCCACTTT
130 GTAGCCATTAAAGTGTCTAAAATAGGGACATTTTTATCAAACGGTCACAAAATCTTCTCCACTTC
* *
2700982 GAGTTTTTAGCTGAATTTGTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAATTTG
195 GAGTTTTTAGCTGAATTTGTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTG
* * *
2701047 GGACCAAAACTCCTAAAAAAATTTTAAAAAATCCCAAATCATAAAAAGTTTCAAAAATCGTGAAA
260 GGACCAAAACTCCTAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAA
*
2701112 AATAGAAAACGGGTCGTCTTGCCACAAAACTTGACATGAAGGCTTAGGGGACCAGTTTATGAATT
325 AATAGAAAACGGGTCGTCTTGCCACAAAACTTCACATGAAGGCTTAGGGGACCAGTTTATGAATT
* *
2701177 TACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGTGCCTGAACCAACCTACCAC
390 TACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGCGCCTAAACCAACCTACCAC
* * * *
2701242 TCGATTGATCCACAGCTTGCGCATCCTACCTCTCCAGCCGGCTAAGTGCTCGCACGCTCATATCG
455 TAGATCGATCCACAGCTTGCGCATCCCACCTCTCCAGCCGGCTAAGTGCCCGCACGCTCATATCG
* * * **
2701307 TGGGTTGACTTAGGCATACGTAGTTTGCTCCTAGTATAAGATCGAACTGGGCTGAGGGTTGCGAC
520 TGGGTTGACTTAGGCATACGTAGTGTGCTCCCAGTATAAGATCGAACTGGACCAAGGGTTGCGAC
2701372 AGTAAGACCCACAGCAACATCGATAGCACACAAAAGGGACC
585 AGTAAGACCCACAGCAACATCGATAGCACACAAAAGGGACC
* * * * * *
2701413 GGGGGTGTGCGCACATGGTGTGTGATGGGTGTTCGTA-TTGGCCCTTATATTGGCCCCCTTATCT
1 GGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTAGCCCTCATATTGGCCCCC-TATCC
* * *
2701477 CTTATCAAACCTCAAGAACT-CA-CCCTCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTCCCA
65 CTCATCAAACCTCAAGAACTACACCCCCCTTAAAGAGAATTTGACATTTTATAGGTTTGCTCCCA
* * * *
2701540 GTAGCCATTAAAGTGTCTGAAATGGGGATATTTTTTTCAAACGGTCACAAAATCTTCTCCACTTC
130 GTAGCCATTAAAGTGTCTAAAATAGGGACATTTTTATCAAACGGTCACAAAATCTTCTCCACTTC
*
2701605 GAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTG
195 GAGTTTTTAGCTGAATTTGTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTG
* * * * *
2701670 GGGCCAAAACTCCTTCTAAAAAATTTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAACTCATG
260 GGACCAAAACT-C--CTAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATG
* * *
2701735 AAAAATAGAAAATGGGTCGTCTTTTGCCACGAAACTTCACATGAAGGCTTCGGGGACCA-TTGTA
322 AAAAATAGAAAACGGGTCGTC--TTGCCACAAAACTTCACATGAAGGCTTAGGGGACCAGTT-TA
* *
2701799 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGCGCCTAAACCCACC
384 TGAATTTACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGCGCCTAAACCAACC
** * * *
2701864 TACCACTAGATCGATCCATGGCTTGCGCATCCCGCCTCTCC-GATCGGCTAAGTGCCCGTACGCT
449 TACCACTAGATCGATCCACAGCTTGCGCATCCCACCTCTCCAG-CCGGCTAAGTGCCCGCACGCT
* * * *
2701928 CATTTCGTGGGTTGACTTAGGCGTACGTAGTGTGCTCCCAGTCTAAGATCAGATC-GGACCAAGG
513 CATATCGTGGGTTGACTTAGGCATACGTAGTGTGCTCCCAGTATAAGATC-GAACTGGACCAAGG
*
2701992 GTTGTGACAG
577 GTTGCGACAG
2702002 CAGGACTCGT
Statistics
Matches: 523, Mismatches: 57, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
623 168 0.32
624 3 0.01
625 19 0.04
626 118 0.23
627 3 0.01
628 209 0.40
629 3 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (625 bp):
GGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTAGCCCTCATATTGGCCCCCTATCCC
TCATCAAACCTCAAGAACTACACCCCCCTTAAAGAGAATTTGACATTTTATAGGTTTGCTCCCAG
TAGCCATTAAAGTGTCTAAAATAGGGACATTTTTATCAAACGGTCACAAAATCTTCTCCACTTCG
AGTTTTTAGCTGAATTTGTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGG
GACCAAAACTCCTAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATCATGAAAA
ATAGAAAACGGGTCGTCTTGCCACAAAACTTCACATGAAGGCTTAGGGGACCAGTTTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGACAGAAATATGAAGATGCGCCTAAACCAACCTACCACT
AGATCGATCCACAGCTTGCGCATCCCACCTCTCCAGCCGGCTAAGTGCCCGCACGCTCATATCGT
GGGTTGACTTAGGCATACGTAGTGTGCTCCCAGTATAAGATCGAACTGGACCAAGGGTTGCGACA
GTAAGACCCACAGCAACATCGATAGCACACAAAAGGGACC
Found at i:2702340 original size:195 final size:196
Alignment explanation
Indices: 2701963--2702327 Score: 452
Period size: 195 Copynumber: 1.9 Consensus size: 196
2701953 CGTAGTGTGC
* * * * *
2701963 TCCCAGTCTAAGATCAGATCGGACCAAGGGTTGTGACAGCAGGACTCGTAATGGGATTGACAGCA
1 TCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAAGACTAGCAATAGGATTGACAGCA
* * *
2702028 CACAGAGGGGACCGGGTCGATCCTCGGCTTACGTATCTTACCTCTCTAGCCTGCTGAGCGCCCGC
66 CACAGAGGGGACCGGGTCGATCCTCGGCTTACGCATCTTACCTCTCGAGCCTGCTGAGCACCCGC
2702093 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAAAGTTCA
131 ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAAAGTTCA
2702158 T
196 T
* * * * * **
2702159 TCCCAGTCTAAGATCATATCGGATCGAGGGTTGCGGCAGCAAGACTAGCAGTAGGATTGGTAGCA
1 TCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAAGACTAGCAATAGGATTGACAGCA
** * *
2702224 CGTAG-GGGGACCGGG-CTGATCCTCGGCTTACGCAT-TCTGCCTCTCCGA-TC-GACTGAGCAC
66 CACAGAGGGGACCGGGTC-GATCCTCGGCTTACGCATCT-TACCTCT-CGAGCCTG-CTGAGCAC
* * * *
2702284 CCGCACGCTCATTTTGTGGGTTGGCTTAGGCATGCGGTGTTCAT
127 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
2702328 TCCATGTCTA
Statistics
Matches: 142, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
194 3 0.02
195 81 0.57
196 58 0.41
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (196 bp):
TCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCAAGACTAGCAATAGGATTGACAGCA
CACAGAGGGGACCGGGTCGATCCTCGGCTTACGCATCTTACCTCTCGAGCCTGCTGAGCACCCGC
ACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAATCTAAGCATACAAAGTTCA
T
Found at i:2702502 original size:26 final size:26
Alignment explanation
Indices: 2702472--2702524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2702462 GTTGACCTAG
2702472 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
2702498 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
2702524 G
1 G
2702525 ATCGAACTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:2703036 original size:45 final size:45
Alignment explanation
Indices: 2702967--2703137 Score: 191
Period size: 45 Copynumber: 3.8 Consensus size: 45
2702957 GGGCTCGACC
* * * * *
2702967 TGTGTCGATGGTGGTCGAAGCAATCGCCCGCACCATGGCCCAGCA
1 TGTGCCGATGGTGGTCGAAGCAATCGCCCGTACCAAGGCCTAGCT
* * * * *
2703012 TGTGCCGATGGTGTTCGATGCAATCGCCCGTACCAGGGGCTATCT
1 TGTGCCGATGGTGGTCGAAGCAATCGCCCGTACCAAGGCCTAGCT
* * *
2703057 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTTCCAAGGCCTAGCT
1 TGTGCCGATGGTGGTCGAAGCAATCGCCCGTACCAAGGCCTAGCT
* *
2703102 TGTGCCGATGGCGGTCGAGGCAAGT-GCCCGTACCAA
1 TGTGCCGATGGTGGTCGAAGCAA-TCGCCCGTACCAA
2703138 AAGGCAGCCT
Statistics
Matches: 106, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 106 1.00
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (45 bp):
TGTGCCGATGGTGGTCGAAGCAATCGCCCGTACCAAGGCCTAGCT
Found at i:2703131 original size:90 final size:90
Alignment explanation
Indices: 2702967--2703136 Score: 225
Period size: 90 Copynumber: 1.9 Consensus size: 90
2702957 GGGCTCGACC
* * * * * *
2702967 TGTGTCGATGGTGGTCGAAGCAATCGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGCGGTCGAGG
2703032 CAATCGCCCGTACCAGGGGCTATCT
66 CAATCGCCCGTACCAGGGGCTATCT
* ** * *
2703057 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTTCCAAGGCCTAGCTTGTGCCGATGGCGGTCGAGG
1 TGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGCGGTCGAGG
2703122 CAAGT-GCCCGTACCA
66 CAA-TCGCCCGTACCA
2703137 AAAGGCAGCC
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
90 67 0.99
91 1 0.01
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAAGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGCGGTCGAGG
CAATCGCCCGTACCAGGGGCTATCT
Found at i:2703153 original size:45 final size:45
Alignment explanation
Indices: 2702972--2703174 Score: 144
Period size: 45 Copynumber: 4.5 Consensus size: 45
2702962 CGACCTGTGT
* * * * * *
2702972 CGATGGTGGTCGAAGCAA-TCGCCCGCACCATGGCCCAGCATGTGC
1 CGATGGTGGTCGAGGCAAGT-GCCCGTACCAAGGCCTAGCCTATGC
* * * * * * *
2703017 CGATGGTGTTCGATGCAA-TCGCCCGTACCAGGGGCTATCTTGTGC
1 CGATGGTGGTCGAGGCAAGT-GCCCGTACCAAGGCCTAGCCTATGC
** * * *
2703062 CGATGGTGGTCGAGGCAACCGCCCGTTCCAAGGCCTAGCTTGTGC
1 CGATGGTGGTCGAGGCAAGTGCCCGTACCAAGGCCTAGCCTATGC
*
2703107 CGATGGCGGTCGAGGCAAGTGCCCGTACCAAAAGG-C-AGCCTATGC
1 CGATGGTGGTCGAGGCAAGTGCCCGTACC--AAGGCCTAGCCTATGC
* * *
2703152 CGATGATGGTCGATGCATGTGCC
1 CGATGGTGGTCGAGGCAAGTGCC
2703175 ATCACCATGC
Statistics
Matches: 130, Mismatches: 25, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
45 125 0.96
46 1 0.01
47 4 0.03
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.20
Consensus pattern (45 bp):
CGATGGTGGTCGAGGCAAGTGCCCGTACCAAGGCCTAGCCTATGC
Found at i:2703153 original size:90 final size:90
Alignment explanation
Indices: 2702972--2703164 Score: 210
Period size: 90 Copynumber: 2.1 Consensus size: 90
2702962 CGACCTGTGT
* * * * *
2702972 CGATGGTGGTCGAAGCAATCGCCCGCACCATGGCCCAGCATGTGCCGATGGTGTTCGATGCAATC
1 CGATGGTGGTCGAAGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGCGGTCGAGGCAATC
** * * *
2703037 GCCCGTACCAGGGGCTATCTTGTGC
66 GCCCGTACCAAAGGCTAGCCTATGC
* ** * *
2703062 CGATGGTGGTCGAGGCAACCGCCCGTTCCAAGGCCTAGCTTGTGCCGATGGCGGTCGAGGCAAGT
1 CGATGGTGGTCGAAGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGCGGTCGAGGCAA-T
2703127 -GCCCGTACCAAAAGGC-AGCCTATGC
65 CGCCCGTACC-AAAGGCTAGCCTATGC
*
2703152 CGATGATGGTCGA
1 CGATGGTGGTCGA
2703165 TGCATGTGCC
Statistics
Matches: 85, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
90 80 0.94
91 5 0.06
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
CGATGGTGGTCGAAGCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGCGGTCGAGGCAATC
GCCCGTACCAAAGGCTAGCCTATGC
Done.