Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 25 of 120
Found at i:2782709 original size:13 final size:13
Alignment explanation
Indices: 2782691--2782715 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2782681 CAATGGCACA
2782691 TGATGGCACATGG
1 TGATGGCACATGG
2782704 TGATGGCACATG
1 TGATGGCACATG
2782716 CATGGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2782837 original size:45 final size:45
Alignment explanation
Indices: 2782761--2782913 Score: 136
Period size: 45 Copynumber: 3.4 Consensus size: 45
2782751 TGGGCACTTA
** *
2782761 CCTCGACTGCCATCGGCACAAGCTGAGCCCTGGTGCAG-GCGGTTG
1 CCTCGACCACCATCGGCACAAGATG-GCCCTGGTGCAGAGCGGTTG
*
2782806 CCTCGACCACCATCGGCACAAGATGGCCCCTGGT--ATGAACGGTTG
1 CCTCGACCACCATCGGCACAAGATGG-CCCTGGTGCA-GAGCGGTTG
* * * * *
2782851 CATCGAACC-CCATCGGCACATGTTGGGCCGTGGTGC-GAGAGGTTG
1 CCTCG-ACCACCATCGGCACAAGAT-GGCCCTGGTGCAGAGCGGTTG
*
2782896 GCTCGACCACCATCGGCA
1 CCTCGACCACCATCGGCA
2782914 TATGCCGAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 5 0.06
45 77 0.88
46 5 0.06
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.18
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGATGGCCCTGGTGCAGAGCGGTTG
Found at i:2783395 original size:26 final size:26
Alignment explanation
Indices: 2783355--2783405 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2783345 TCGGTTCGAT
2783355 CTTAGACTGGCAATGAACTCCGTATA
1 CTTAGACTGGCAATGAACTCCGTATA
*
2783381 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGCAATGAACTCCGTAT
2783406 GCCTAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATA
Found at i:2783740 original size:26 final size:26
Alignment explanation
Indices: 2783711--2783763 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2783701 CCGATTCGAT
*
2783711 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
2783737 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2783763 C
1 C
2783764 CTCAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2783906 original size:45 final size:45
Alignment explanation
Indices: 2783834--2783936 Score: 109
Period size: 45 Copynumber: 2.3 Consensus size: 45
2783824 AAGCTGGGAT
* * **
2783834 CACCATCGACACATGCCGGATCTTGGTGCGGGCGGTTGCATCGAA
1 CACCATCGGCACATGCCGGATCGTGGTGCAAGCGGTTGCATCGAA
* * *
2783879 CACCATCGGCACATGCTGGGA-CGTGGTGCAAGCGGTTGCCTCGAC
1 CACCATCGGCACATGC-CGGATCGTGGTGCAAGCGGTTGCATCGAA
**
2783924 CATTATCGGCACA
1 CACCATCGGCACA
2783937 AGTCGAGCCC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
45 45 0.94
46 3 0.06
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (45 bp):
CACCATCGGCACATGCCGGATCGTGGTGCAAGCGGTTGCATCGAA
Found at i:2784415 original size:26 final size:26
Alignment explanation
Indices: 2784379--2784431 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2784369 TCGGTCTGAT
2784379 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2784405 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2784431 C
1 C
2784432 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2784443 original size:162 final size:161
Alignment explanation
Indices: 2784253--2784810 Score: 533
Period size: 162 Copynumber: 3.5 Consensus size: 161
2784243 CTTAGACCAA
* * * * * *
2784253 GAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAACTGATCGGAGA
1 GAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGA
* * *
2784318 GGTAGGATGCGTAAGCTAAGGATCAGCTCGGTCCCCCTCTGTGTGCTGCTGTCGGTCTGATCTTA
66 GGCAGGATGCGCAAGCTAAGGATCAG-TCGGTCCCCCTCTGCGTGCTGCTGTCGGTCTGATCTTA
2784383 GACTGGGAATGAACTCCGTATGCTTAGACTGG
130 GACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
2784415 GAATGAGCTCTGTATGCCTAAGTCAACCCACGAAACGAGCGCGGGGGCGTTGAGCAGGCCGGAGA
1 GAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGA
** ** * * *
2784480 GGCATAATGCGCAAGCTGGGGATCAGTCTGGTCCCCCTCTACGTGCTGCCAGTC-CTGCTGCCA-
66 GGCAGGATGCGCAAGCTAAGGATCAGTC-GGTCCCCCTCTGCGTGCTG-CTGTCGGT-CTG--AT
* ** * **
2784543 C-AACCCT-CG-ATCCG-ACT--G-GGGCTTAGACAT-G
126 CTTAGACTGGGAAT--GAACTCCGTATGCTTAGAC-TGG
* * * *
2784574 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGACCAGAGA
1 GAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGA
* * * * * *
2784639 GGCAGGATGCGCAAGCCAAGGATCGGTCCGATCCCCCTCTGCATGCTACTGCCGGTCTGATCTTA
66 GGCAGGATGCGCAAGCTAAGGATCAGT-CGGTCCCCCTCTGCGTGCTGCTGTCGGTCTGATCTTA
2784704 GACTGGGAATGAACTCCGTATGCTTAGACTGG
130 GACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
2784736 GAATGAGCTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTTAGCCGGCCGGAGA
1 GAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGA
*
2784801 GGCAGAATGC
66 GGCAGGATGC
2784811 ACAAACTGGG
Statistics
Matches: 308, Mismatches: 69, Indels: 38
0.74 0.17 0.09
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 10 0.03
159 104 0.34
160 5 0.02
161 6 0.02
162 168 0.55
163 11 0.04
164 1 0.00
165 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.30, T:0.20
Consensus pattern (161 bp):
GAATGAGCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAGA
GGCAGGATGCGCAAGCTAAGGATCAGTCGGTCCCCCTCTGCGTGCTGCTGTCGGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGG
Found at i:2784612 original size:321 final size:321
Alignment explanation
Indices: 2784238--2784822 Score: 879
Period size: 321 Copynumber: 1.8 Consensus size: 321
2784228 TCAGTTCAGT
* *
2784238 TGGGGCTTAGACCAAGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGC
1 TGGGGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCAC
* * * * * * ** *
2784303 TCAACTGATCGGAGAGGTAGGATGCGTAAGCTAAGGATCAGCT-CGGTCCCCCTCTGTGTGCTGC
66 TCAACTGACCAGAGAGGCAGGATGCGCAAGCCAAGGATC-GCTCCGATCCCCCTCTGCATGCTAC
* *
2784367 TGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCTGTATGC
130 TGCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGC
* * * * * *
2784432 CTAAGTCAACCCACGAAACGAGCGCGGGGGC-GTTGAGCAGGCCGGAGAGGCATAATGCGCAAGC
195 CTAAGCCAACCCACGAAACGAGCGCGCGGGCACTT-AGCAGGCCGGAGAGGCAGAATGCACAAAC
2784496 TGGGGATCAGTCTGGTCCCCCTCTACGTGCTGCCAGTCCTGCTGCCACAACCCTCGATCCGAC
259 TGGGGATCAGTCTGGTCCCCCTCTACGTGCTGCCAGTCCTGCTGCCACAACCCTCGATCCGAC
* *
2784559 TGGGGCTTAGA-CATGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCA
1 TGGGGCTTAGACCA-AGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCA
* *
2784623 CTCAGCTGACCAGAGAGGCAGGATGCGCAAGCCAAGGATCGGTCCGATCCCCCTCTGCATGCTAC
65 CTCAACTGACCAGAGAGGCAGGATGCGCAAGCCAAGGATCGCTCCGATCCCCCTCTGCATGCTAC
2784688 TGCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGC
130 TGCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGC
* * * *
2784753 CTAAGCCAACCCATGAAACGAGTGTGCGGGCACTTAGCCGGCCGGAGAGGCAGAATGCACAAACT
195 CTAAGCCAACCCACGAAACGAGCGCGCGGGCACTTAGCAGGCCGGAGAGGCAGAATGCACAAACT
2784818 GGGGA
260 GGGGA
2784823 ACGGCTCGAG
Statistics
Matches: 234, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
320 4 0.02
321 228 0.97
322 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.30, T:0.20
Consensus pattern (321 bp):
TGGGGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCAC
TCAACTGACCAGAGAGGCAGGATGCGCAAGCCAAGGATCGCTCCGATCCCCCTCTGCATGCTACT
GCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAGCTCCGTATGCC
TAAGCCAACCCACGAAACGAGCGCGCGGGCACTTAGCAGGCCGGAGAGGCAGAATGCACAAACTG
GGGATCAGTCTGGTCCCCCTCTACGTGCTGCCAGTCCTGCTGCCACAACCCTCGATCCGAC
Found at i:2784736 original size:26 final size:26
Alignment explanation
Indices: 2784700--2784752 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2784690 CCGGTCTGAT
2784700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2784726 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2784752 C
1 C
2784753 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2785970 original size:26 final size:26
Alignment explanation
Indices: 2785934--2785984 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2785924 CCGGTTGAAT
* *
2785934 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2785960 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
2785985 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2786876 original size:13 final size:13
Alignment explanation
Indices: 2786858--2786882 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2786848 CAATGGTACA
2786858 TGATGGCACATGG
1 TGATGGCACATGG
2786871 TGATGGCACATG
1 TGATGGCACATG
2786883 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2787005 original size:89 final size:90
Alignment explanation
Indices: 2786912--2787084 Score: 208
Period size: 89 Copynumber: 1.9 Consensus size: 90
2786902 AGGCTGCCCT
* * * *
2786912 TTGGTACGAGC-ACTTGCCTCGACCACCATTAACACAAGCTG-TGCCTT-GTGTGGGCGGTTGCC
1 TTGGTACGAGCGA-TTGCCTCGACCACCATCAACACAAGATGAT-CCTTGGTGCGGGCGGTTGCA
* *
2786974 TCGATCACCATCGGCACATGCCGGCTC
64 TCGAACACCATCGACACATGCCGGCTC
* * * **
2787001 TTGGTGCGGGCGATTGCCTTGACCACCATCGGCACAAGATGATCCTTGGTGCGGGCGGTTGCATC
1 TTGGTACGAGCGATTGCCTCGACCACCATCAACACAAGATGATCCTTGGTGCGGGCGGTTGCATC
2787066 GAACACCATCGACACATGC
66 GAACACCATCGACACATGC
2787085 TGGGCCATGG
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
89 36 0.51
90 34 0.49
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.23
Consensus pattern (90 bp):
TTGGTACGAGCGATTGCCTCGACCACCATCAACACAAGATGATCCTTGGTGCGGGCGGTTGCATC
GAACACCATCGACACATGCCGGCTC
Found at i:2787028 original size:45 final size:45
Alignment explanation
Indices: 2786963--2787110 Score: 156
Period size: 45 Copynumber: 3.3 Consensus size: 45
2786953 TGCCTTGTGT
* *
2786963 GGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCTCTTGGTGC
1 GGGCGGTTGCCTCGAACACCATCGGCACATGCAGGCTCTTGGTGC
* * * * * *
2787008 GGGCGATTGCCTTGACCACCATCGGCACAAG-ATGATCCTTGGTGC
1 GGGCGGTTGCCTCGAACACCATCGGCACATGCAGGCT-CTTGGTGC
* * * *
2787053 GGGCGGTTGCATCGAACACCATCGACACATGCTGGGC-CATGGTGC
1 GGGCGGTTGCCTCGAACACCATCGGCACATGC-AGGCTCTTGGTGC
2787098 GGGCGGTTGCCTC
1 GGGCGGTTGCCTC
2787111 AACCACCGTC
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
44 2 0.02
45 79 0.96
47 1 0.01
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (45 bp):
GGGCGGTTGCCTCGAACACCATCGGCACATGCAGGCTCTTGGTGC
Found at i:2787116 original size:90 final size:89
Alignment explanation
Indices: 2786955--2787117 Score: 220
Period size: 90 Copynumber: 1.8 Consensus size: 89
2786945 ACAAGCTGTG
* * * * *
2786955 CCTTGTGTGGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCTCTTGGTGCGGGCGATTGCCT
1 CCTTGTGCGGGCGGTTGCATCGAACACCATCGACACATGCCGGCTCATGGTGCGGGCGATTGCCT
**
2787020 TGACCACCATCGGCACAAGATGAT
66 CAACCACCATCGGCACAAGATGAT
* *
2787044 CCTTGGTGCGGGCGGTTGCATCGAACACCATCGACACATGCTGGGC-CATGGTGCGGGCGGTTGC
1 CCTT-GTGCGGGCGGTTGCATCGAACACCATCGACACATGC-CGGCTCATGGTGCGGGCGATTGC
2787108 CTCAACCACC
64 CTCAACCACC
2787118 GTCCGTACAT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
89 4 0.06
90 56 0.89
91 3 0.05
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.21
Consensus pattern (89 bp):
CCTTGTGCGGGCGGTTGCATCGAACACCATCGACACATGCCGGCTCATGGTGCGGGCGATTGCCT
CAACCACCATCGGCACAAGATGAT
Found at i:2787605 original size:26 final size:26
Alignment explanation
Indices: 2787569--2787621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2787559 CTAGCCCGAT
2787569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2787595 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2787621 C
1 C
2787622 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2788626 original size:45 final size:44
Alignment explanation
Indices: 2788577--2788767 Score: 150
Period size: 45 Copynumber: 4.2 Consensus size: 44
2788567 GCCTTAACTG
* * * *
2788577 CCATCGGCATAAGTTGGGCCCTAGTGCGGGCGGTTGCCTCGATCA
1 CCATCAGCACAAG-TGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
* * ** ** *
2788622 CCATCAACACATGCCGGCCCTTGGTGCGGGCAATTACCTCGACCA
1 CCATCAGCACAAGTGGGCCC-TGGTGCGGGCGGTTGCCTCGACCA
* * * * * *
2788667 CCATCGGCATAAAAT-GGCCTCTGGTTCGGGCGGTTGCATCGAACA
1 CCATCAGCA-CAAGTGGGCC-CTGGTGCGGGCGGTTGCCTCGACCA
* * *
2788712 CCATCAGCACATGCTGGGCCATGGTGTGGGCGGTTGCCTCGACCA
1 CCATCAGCACAAG-TGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
2788757 CCATCAGCACA
1 CCATCAGCACA
2788768 TTCTGAGCTT
Statistics
Matches: 109, Mismatches: 32, Indels: 10
0.72 0.21 0.07
Matches are distributed among these distances:
44 6 0.06
45 97 0.89
46 6 0.06
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (44 bp):
CCATCAGCACAAGTGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
Found at i:2788714 original size:90 final size:90
Alignment explanation
Indices: 2788577--2788761 Score: 228
Period size: 90 Copynumber: 2.1 Consensus size: 90
2788567 GCCTTAACTG
** * *
2788577 CCATCGGCATAAGTTGGGCCCTAGTGCGGGCGGTTGCCTCGATCACCATCAACACATGCCGGCCC
1 CCATCGGCATAAAATGGGCCCTAGTGCGGGCGGTTGCATCGAACACCATCAACACATGCCGGCCC
*
2788642 TTGGTGCGGGCAATTACCTCGACCA
66 ATGGTGCGGGCAATTACCTCGACCA
* * * * *
2788667 CCATCGGCATAAAAT-GGCCTCTGGTTCGGGCGGTTGCATCGAACACCATCAGCACATGCTGGGC
1 CCATCGGCATAAAATGGGCC-CTAGTGCGGGCGGTTGCATCGAACACCATCAACACATGCCGGCC
* ** *
2788731 CATGGTGTGGGCGGTTGCCTCGACCA
65 CATGGTGCGGGCAATTACCTCGACCA
2788757 CCATC
1 CCATC
2788762 AGCACATTCT
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
89 4 0.05
90 76 0.95
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.21
Consensus pattern (90 bp):
CCATCGGCATAAAATGGGCCCTAGTGCGGGCGGTTGCATCGAACACCATCAACACATGCCGGCCC
ATGGTGCGGGCAATTACCTCGACCA
Found at i:2789259 original size:26 final size:26
Alignment explanation
Indices: 2789209--2789261 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2789199 TCAGTCTGAT
* * *
2789209 CTTAGATTGGGAATGAAGTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
2789235 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
2789261 C
1 C
2789262 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:2794346 original size:45 final size:45
Alignment explanation
Indices: 2794207--2794427 Score: 172
Period size: 45 Copynumber: 4.9 Consensus size: 45
2794197 GACACAGGTT
* ** *
2794207 GCCCTTTGGTACAGGCACTTGCCTCGACCATCATTGGCACAAGCTG
1 GCCC-TTGGTGCAGGCGGTTGCCTCGACCACCATTGGCACAAGCTG
* * * * * * * *
2794253 GGCCTTGGTACAGGTGGTTGCCTCGATCACCATCGACACATGCCG
1 GCCCTTGGTGCAGGCGGTTGCCTCGACCACCATTGGCACAAGCTG
* * *
2794298 GCCCTTGGTGCGGGCGATTGCCTCGACCACCATTGGCACAAGATG
1 GCCCTTGGTGCAGGCGGTTGCCTCGACCACCATTGGCACAAGCTG
* * * * * *** *
2794343 GCCCCTAGTGCTGGCGGTTGCATCGAACACCATCCACACATGCTG
1 GCCCTTGGTGCAGGCGGTTGCCTCGACCACCATTGGCACAAGCTG
* * * * *
2794388 GGCCGTGGTGCAGGCAGTTACCTCGACCACCATCGGCACA
1 GCCCTTGGTGCAGGCGGTTGCCTCGACCACCATTGGCACA
2794428 TGCCGAGCCT
Statistics
Matches: 133, Mismatches: 42, Indels: 1
0.76 0.24 0.01
Matches are distributed among these distances:
45 130 0.98
46 3 0.02
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (45 bp):
GCCCTTGGTGCAGGCGGTTGCCTCGACCACCATTGGCACAAGCTG
Found at i:2794362 original size:90 final size:90
Alignment explanation
Indices: 2794213--2794427 Score: 243
Period size: 90 Copynumber: 2.4 Consensus size: 90
2794203 GGTTGCCCTT
* * * * * * * * *
2794213 TGGTACAGGCACTTGCCTCGACCATCATTGGCACAAGCTGGGCCTTGGTACAGGTGGTTGCCTCG
1 TGGTGCAGGCAGTTGCCTCGACCACCATTGGCACAAGATGGCCCCTAGTACAGGCGGTTGCATCG
* * *
2794278 ATCACCATCGACACATGCCGGCCCT
66 AACACCATCCACACATGCCGGCCCG
* * *
2794303 TGGTGCGGGC-GATTGCCTCGACCACCATTGGCACAAGATGGCCCCTAGTGCTGGCGGTTGCATC
1 TGGTGCAGGCAG-TTGCCTCGACCACCATTGGCACAAGATGGCCCCTAGTACAGGCGGTTGCATC
* *
2794367 GAACACCATCCACACATGCTGGGCCG
65 GAACACCATCCACACATGCCGGCCCG
* *
2794393 TGGTGCAGGCAGTTACCTCGACCACCATCGGCACA
1 TGGTGCAGGCAGTTGCCTCGACCACCATTGGCACA
2794428 TGCCGAGCCT
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
90 102 0.99
91 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (90 bp):
TGGTGCAGGCAGTTGCCTCGACCACCATTGGCACAAGATGGCCCCTAGTACAGGCGGTTGCATCG
AACACCATCCACACATGCCGGCCCG
Found at i:2796878 original size:333 final size:330
Alignment explanation
Indices: 2796104--2796879 Score: 947
Period size: 333 Copynumber: 2.3 Consensus size: 330
2796094 GGTCCCTTGA
* *
2796104 TCCAGTTGGGGCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
1 TCCAGTTGGGGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTG
* * * *
2796168 CGGGCATTCAATC-AGTCAGAGAGGCAGAATGCGCAAGCCGAGGATCGTCTCAGTCCCCCTCTGC
65 CGGGC--TC-ACCGA-TCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACTCAGTCCCCCTCTGC
** *
2796232 GTGCTGCTGTCGATCCCGCTGTCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGATT
126 GTGCTGCTACCGATCCCGCTGTCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACT
2796297 ACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTGAGCCGACCGGA
191 ACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTGAGCCGACCGGA
* * **
2796362 GAGGTATAACGCGCAAGCCGGGGATCAATCCGGTCCACCTCTATGTGCTGTCGATCCCGCTACCA
256 GAGGCATAACACGCAAGCCGAAGATCAATCCGGTCCACCTCTATGTGCTGTCGATCCCGCTACCA
2796427 CAACCCTCGG
321 CAACCCTCGG
* * * * *
2796437 TCCAGCTAGGGCTTAGACATGGAATCAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGC
1 TCCAGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC
* * *
2796502 GGGCACTCAGCCGAT-AGGAGAGGTAGAATGCGTAAGCCGGGGATTGAAC-C-GATCCCCTTCTG
66 GGG--CTCA-CCGATCA-GAGAGGCAGAATGCGTAAGCCGGGGATCG-ACTCAG-TCCCCCTCTG
* * * *
2796564 CGTGCTGCTACCGATCCCGCTGTCGGTCGGATCTTAGACTGGGAGTGAACTCTATATGCTTAGAC
125 CGTGCTGCTACCGATCCCGCTGTCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGAC
** * ** *
2796629 TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAGCC-AGCCG
190 TACGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTGAGCCGA-CCG
* * * * *
2796693 GAGAGGCATAATACGTAAGCCGAAGATCGATCCGGT-C-CCTCTCTGCATGCTTTCGATCCCGCT
254 GAGAGGCATAACACGCAAGCCGAAGATCAATCCGGTCCACCTCTATG--TGCTGTCGATCCCGCT
* *
2796756 GCCACAACCTTCGG
317 ACCACAACCCTCGG
* * *
2796770 TCCGGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTAC
1 TCCAGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC
* * *
2796835 AGGTGCTCGACCGATCAGAGAGGCAAAATGCATAAGTCGGGGATC
66 -GG-GCTC-ACCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATC
2796880 AGCCCGGTCC
Statistics
Matches: 377, Mismatches: 51, Indels: 30
0.82 0.11 0.07
Matches are distributed among these distances:
331 7 0.02
332 5 0.01
333 356 0.94
334 7 0.02
335 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (330 bp):
TCCAGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGCGTGC
GGGCTCACCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACTCAGTCCCCCTCTGCGTGCT
GCTACCGATCCCGCTGTCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTACGAA
TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGCACTGAGCCGACCGGAGAGGC
ATAACACGCAAGCCGAAGATCAATCCGGTCCACCTCTATGTGCTGTCGATCCCGCTACCACAACC
CTCGG
Found at i:2796910 original size:159 final size:159
Alignment explanation
Indices: 2796621--2796917 Score: 345
Period size: 159 Copynumber: 1.9 Consensus size: 159
2796611 AACTCTATAT
* * *
2796621 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTACAGGCGCTGAG
* * * * * *
2796686 CCAGCCGGAGAGGCATAATACGTAAGCCGAAGATCGATCCGGTCCCTCTCTGCATGCTTTCGATC
66 CCAGCCAGAGAGGCAAAATACATAAGCCGAAGATCGACCCGGTCCCTCTCTCCATGCTGTCGATC
2796751 CCGCTGCCACAACCTTCGGTCCGGTTGGG
131 CCGCTGCCACAACCTTCGGTCCGGTTGGG
* *
2796780 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTACAGGTGCTCG
1 GCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTACAGGCGCT-G
* * * **
2796844 A-CC-GATCAGAGAGGCAAAATGCATAAGTCGGGGATC-AGCCCGGTCCCT-TC-CCACGTGCTG
64 AGCCAG-CCAGAGAGGCAAAATACATAAGCCGAAGATCGA-CCCGGTCCCTCTCTCCA--TGCTG
*
2796904 TCGATCCTGCTGCC
125 TCGATCCCGCTGCC
2796918 GGTCCTGCTA
Statistics
Matches: 115, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
157 2 0.02
158 4 0.03
159 106 0.92
160 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGTGTACAGGCGCTGAG
CCAGCCAGAGAGGCAAAATACATAAGCCGAAGATCGACCCGGTCCCTCTCTCCATGCTGTCGATC
CCGCTGCCACAACCTTCGGTCCGGTTGGG
Found at i:2796993 original size:26 final size:26
Alignment explanation
Indices: 2796952--2797003 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2796942 CCGGTCCGAT
*
2796952 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
2796978 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2797004 GCTAACTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2797150 original size:195 final size:197
Alignment explanation
Indices: 2796780--2797154 Score: 479
Period size: 196 Copynumber: 1.9 Consensus size: 197
2796770 TCCGGTTGGG
* * * *
2796780 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAATGAGTGTACAGGTGCTCGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCAA
* * ** * *
2796845 CCGATCAGAGAGGCAAAATGCATAAGTCGGGGATCAGCCCGGTCCCTTCCCACGTGCTGTCGATC
66 CCGACCAGAGAGGCAAAATGCACAAGTCGACGATCAGCCCGATCCCCTCCCACGTGCTGTCGATC
* * * *
2796910 CTGCTGCCGGTCCTGCTACCGCATCCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGT
131 CCGCTGCAGGTCCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGT
2796975 AT
196 AT
* * * *
2796977 GCTTAGAC-TGGGGATGAACTCCGTATGGCTAA-CTAACCCATGAAACGAGCGTACGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCA
* ** *
2797040 ACCGGCCAGAGAGGCAGGATGCACAAGTCGACGATC-GACCCGATCCCCT-CTACGTGCTGTCGA
65 ACCGACCAGAGAGGCAAAATGCACAAGTCGACGATCAG-CCCGATCCCCTCCCACGTGCTGTCGA
* * *
2797103 TCCCGCTGCAGGTCCTACTACTGCAACCCTCGGTCTGGTCTGATCTTAGACT
129 TCCCGCTGCAGGTCCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAGACT
2797155 GGGAGCACAC
Statistics
Matches: 151, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
195 59 0.39
196 65 0.43
197 27 0.18
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACAGGTGCTCAA
CCGACCAGAGAGGCAAAATGCACAAGTCGACGATCAGCCCGATCCCCTCCCACGTGCTGTCGATC
CCGCTGCAGGTCCTACTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGT
AT
Found at i:2798599 original size:26 final size:26
Alignment explanation
Indices: 2798547--2798599 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2798537 CCGATCCGAT
**
2798547 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCACATG
*
2798573 CTTAGACTGGGAATGAACTCTACATG
1 CTTAGACTGGGAATGAACTCCACATG
2798599 C
1 C
2798600 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:2798757 original size:26 final size:26
Alignment explanation
Indices: 2798721--2798773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2798711 TCGGTCCAAA
2798721 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
* *
2798747 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCTGTATG
2798773 C
1 C
2798774 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCTGTATG
Found at i:2798859 original size:174 final size:173
Alignment explanation
Indices: 2798398--2798859 Score: 529
Period size: 174 Copynumber: 2.7 Consensus size: 173
2798388 TCCAGTTGGG
* *
2798398 GCTTAGATCGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAA
1 GCTTAGAT-GGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT-AA
* ** * * * * *
2798463 -CCGATCGGGGAGGTAGGATATGC--AAGCCGAGGATCGACCCGATCCCCCTCTGCGTATTGCTG
64 GCCGGTCGAAGAGGCA--AAATGCGTAAGTCGAGGATCGACTCGATCCCCCTCTGCGTACTGCTG
* * *
2798525 CCGATCCCGCTACCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
127 CCGATCCCGCTACCGATCCAAACTTAGACTGGGAAAGAACTCCGTAT
** * ** *
2798572 GCTTAGACTGGGAATGAACTCTACATGCCTAAGTCAACCCACGAAATAAGCGTGCGGGCGCTCAG
1 GCTTAGA-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAG
* * * * * * *
2798637 CCAGTC-AGAGAGGCAAAATGCGTAAGTCAAGAATCAGA-TCGGTCCCCCTCTGTGTGCTGCTGT
65 CCGGTCGA-AGAGGCAAAATGCGTAAGTCGAGGATC-GACTCGATCCCCCTCTGCGTACTGCTGC
* * *
2798700 CGATCCCGCTATCGGTCCAAACTTAGACTGGGAAAGAACTCTGTAT
128 CGATCCCGCTACCGATCCAAACTTAGACTGGGAAAGAACTCCGTAT
* *
2798746 GCTTAGAGTGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGTGCTAAG
1 GCTTAGA-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAG
*
2798811 CCGGTCGAAGAGGCATAATGCGTAAGTCGAGGATCGACTCGATCCCCCT
65 CCGGTCGAAGAGGCAAAATGCGTAAGTCGAGGATCGACTCGATCCCCCT
2798860 TTACGTGCTG
Statistics
Matches: 237, Mismatches: 43, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
172 5 0.02
173 3 0.01
174 225 0.95
175 4 0.02
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (173 bp):
GCTTAGATGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGC
CGGTCGAAGAGGCAAAATGCGTAAGTCGAGGATCGACTCGATCCCCCTCTGCGTACTGCTGCCGA
TCCCGCTACCGATCCAAACTTAGACTGGGAAAGAACTCCGTAT
Found at i:2799116 original size:26 final size:26
Alignment explanation
Indices: 2799077--2799155 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
2799067 TTGACCTGAT
**
2799077 CTTAGACTACGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
2799103 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* * *
2799129 CCTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
2799155 C
1 C
2799156 CTAAGTCAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:2799156 original size:26 final size:26
Alignment explanation
Indices: 2799087--2799158 Score: 108
Period size: 26 Copynumber: 2.8 Consensus size: 26
2799077 CTTAGACTAC
*
2799087 GAATGAACTCTGTATGCTTAGACTGG
1 GAATGAACTCTGTATGCCTAGACTGG
*
2799113 GAATGAACTTTGTATGCCTAGACTGG
1 GAATGAACTCTGTATGCCTAGACTGG
* *
2799139 GGATGAACTCCGTATGCCTA
1 GAATGAACTCTGTATGCCTA
2799159 AGTCAACCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
GAATGAACTCTGTATGCCTAGACTGG
Found at i:2799576 original size:45 final size:45
Alignment explanation
Indices: 2799515--2799717 Score: 140
Period size: 45 Copynumber: 4.5 Consensus size: 45
2799505 GTATGGGCAC
** *
2799515 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTGGTGCGGACGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * * *
2799560 TTGCCTCGATCACCATCGACACATA-C-CGACCCTTGGTACGGGCGA
1 TTGCCTCGACCACCATCGGCACA-AGCTGGGCCC-TGGTGCGGGCGG
* * * ** *
2799605 TTGCCTCGACCACCATCAGTATAATATAGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * ** * * *
2799650 TTGCATCAAACACCAGCGGCACTTGCTGGGCCATGGTGTGGGCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* *
2799695 TTGCCTTGACCACCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
2799718 TGTCGAGCCC
Statistics
Matches: 113, Mismatches: 41, Indels: 8
0.70 0.25 0.05
Matches are distributed among these distances:
44 5 0.04
45 103 0.91
46 5 0.04
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:2800121 original size:158 final size:159
Alignment explanation
Indices: 2799868--2800298 Score: 512
Period size: 159 Copynumber: 2.7 Consensus size: 159
2799858 TGGTTCATCA
* * * * *
2799868 AGACCGGGAATGCACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGAGCTTAGTC-A
1 AGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGA
* * * *
2799932 GTCGGAGAGCCAGAATGCGTAAG-CTGAGGATCGGCCTGGTCCCCCTCTGCGTGATGCC-GATCC
66 -TCGGAGAGGCAGAATGCGCAAGCCAG-GGATCGGCCCGGTCCCCCTCTGCGTGATGCCAG-TCC
* ****
2799995 CGTTA-CGGGTCCCTCGGTCC-GATTGGGGCTT
128 CGCTACCACAACCCTCGGTCCTG-TTGGGGCTT
* * **
2800026 AGACCGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTCAACCGA
1 AGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGA
* * * * * *
2800091 TCGGAAAGGCAGGATGCGCAAGCCAGGGATCGGCCCAGTCCCCCTCTACGTGCTGTCAGTCCCGC
66 TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGATGCCAGTCCCGC
2800156 TACCACAACCCTCGGTCCTGTTGGGGCTT
131 TACCACAACCCTCGGTCCTGTTGGGGCTT
** *
2800185 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGA
1 AGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGA
* * * *
2800250 CCGGAGAGGCAGAATGTGCAAGCCAGGGATCGACCCGATCCCCCTCTGC
66 TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGC
2800299 ATGCTACAGT
Statistics
Matches: 229, Mismatches: 39, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
158 105 0.46
159 123 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (159 bp):
AGACCGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGA
TCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGATGCCAGTCCCGC
TACCACAACCCTCGGTCCTGTTGGGGCTT
Found at i:2800366 original size:26 final size:26
Alignment explanation
Indices: 2800330--2800382 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2800320 CAGGTCTGAT
2800330 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTGGGAATGAACTCCATATG
*
2800356 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCATATG
2800382 C
1 C
2800383 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCATATG
Found at i:2801744 original size:45 final size:44
Alignment explanation
Indices: 2801650--2801857 Score: 191
Period size: 45 Copynumber: 4.6 Consensus size: 44
2801640 GTATGGGCAC
* * * * **
2801650 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTTTGGGCGG
1 TTGCCTCGACCACCATCGGCACATGC-CGGCCCTGGTGCGGGCGG
* * * *
2801695 TTGCCTCGATCACCATCGGCACATGCCAGCCCTTGGTGCGGGTGA
1 TTGCCTCGACCACCATCGGCACATGCCGGCCC-TGGTGCGGGCGG
* * * **
2801740 TTGCCTCAACCACCATCGGGACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCCGG-CCCTGGTGCGGGCGG
* * * * * *
2801785 TTACATCGAACACCATCGACACATGCTGGGCCGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGC-CGGCCCTGGTGCGGGCGG
2801830 TTGCCTCGACCACCATCGGCACATGCCG
1 TTGCCTCGACCACCATCGGCACATGCCG
2801858 AGGCCCGATC
Statistics
Matches: 128, Mismatches: 32, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
44 5 0.04
45 118 0.92
46 5 0.04
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.19
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACATGCCGGCCCTGGTGCGGGCGG
Found at i:2801744 original size:90 final size:90
Alignment explanation
Indices: 2801650--2801852 Score: 244
Period size: 90 Copynumber: 2.3 Consensus size: 90
2801640 GTATGGGCAC
* * * * ** * * * *
2801650 TTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTTTGGGCGGTTGCCTCGATCACCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACACCATCGAC
* *
2801715 ACATGCCAGCCCTTGGTGCGGGTGA
66 ACATGCCAGCCCGTGGTGCGGGCGA
* *
2801740 TTGCCTCAACCACCATCGGGACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACACCATCGAC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACACCATCGAC
** * *
2801805 ACATGCTGGGCCGTGGTGCGGGCGG
66 ACATGCCAGCCCGTGGTGCGGGCGA
2801830 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
2801853 TGCCGAGGCC
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTACATCGAACACCATCGAC
ACATGCCAGCCCGTGGTGCGGGCGA
Found at i:2802689 original size:197 final size:197
Alignment explanation
Indices: 2802329--2802696 Score: 424
Period size: 197 Copynumber: 1.9 Consensus size: 197
2802319 TAGACAGGGA
* * * *
2802329 ATGAACTCCGTATGCCTAAGCCAGCCCATGAAACGAGCGTGCTGGGGTTCATCCGGTCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCTGGGGCTCATCCGGCCAGAGAGG
* * * * * * * * * *
2802394 CAGAATGCGTAAGTCGGGGATCGGCCCGGTCCCCCTTTACGTGCTGTAGATCCTACTGCTGGTTC
66 AAGAATGCGTAAGTCGGGGATCGACCCAGTCCCCCTCTACGTACTGCAGATCCCACTACGGGTCC
* *
2802459 TGCTACTGCAACTCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAT
131 TACTACTGCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAT
2802524 GG
196 GG
* **
2802526 ATGAACTCCGTATGCCTAAGTCAACCCATGAATTGAGCATGC-GGGCGCTCAGT-CGGCCAGAGA
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCTGGG-GCTCA-TCCGGCCAGAGA
* *
2802589 GGTAAG-ATGCGTAAG-CGGGGGATCGACCCAGT-CCCCTCTGCGTACTGCAGATCCCGCTACGG
64 GG-AAGAATGCGTAAGTC-GGGGATCGACCCAGTCCCCCTCTACGTACTGCAGATCCCACTACGG
* * *
2802651 GTCCTACTA-TCGCAAGCCCTCAGTTCGGTCTGATCTTAGACTGGGA
127 GTCCTACTACT-GCAA-CCCTCAGTCCGATCTAATCTTAGACTGGGA
2802697 GCGCACTATG
Statistics
Matches: 141, Mismatches: 24, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
195 1 0.01
196 37 0.26
197 100 0.71
198 3 0.02
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (197 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCTGGGGCTCATCCGGCCAGAGAGG
AAGAATGCGTAAGTCGGGGATCGACCCAGTCCCCCTCTACGTACTGCAGATCCCACTACGGGTCC
TACTACTGCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAAT
GG
Found at i:2803458 original size:10 final size:10
Alignment explanation
Indices: 2803443--2803468 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
2803433 ATGGCACATG
2803443 CATCGACCAT
1 CATCGACCAT
2803453 CATCGACCAT
1 CATCGACCAT
2803463 CATCGA
1 CATCGA
2803469 TACAGGCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.38, G:0.12, T:0.19
Consensus pattern (10 bp):
CATCGACCAT
Found at i:2803547 original size:45 final size:44
Alignment explanation
Indices: 2803495--2803662 Score: 165
Period size: 45 Copynumber: 3.7 Consensus size: 44
2803485 GTACGGGCAC
* * *
2803495 TTGCCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGCAGACGA
1 TTGCCTCGA-CACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
2803540 TTACCTCGACAACCATCGGCACAAGATGGCCCCTGGTACGGGTGG
1 TTGCCTCGAC-ACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
2803585 TTGCATCGAACACCATCGACACATGCTAGGCCGTGGTGCGGGCGG
1 TTGCCTCG-ACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* *
2803630 TTGCCTCGACCACCATCGGCACATGCTGAGCCC
1 TTGCCTCGA-CACCATCGGCACAAGCTGGGCCC
2803663 CGGTCGGCCC
Statistics
Matches: 97, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
44 2 0.02
45 93 0.96
46 2 0.02
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (44 bp):
TTGCCTCGACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:2804126 original size:26 final size:26
Alignment explanation
Indices: 2804088--2804140 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2804078 CTGGTCTGAT
**
2804088 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
2804114 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
2804140 C
1 C
2804141 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:2804478 original size:26 final size:26
Alignment explanation
Indices: 2804442--2804494 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2804432 CCGATCCGAT
**
2804442 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
2804468 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
2804494 C
1 C
2804495 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:2805359 original size:45 final size:45
Alignment explanation
Indices: 2805276--2805428 Score: 164
Period size: 45 Copynumber: 3.4 Consensus size: 45
2805266 GGCACATGCA
* * * ** *
2805276 TCGACCATCATCGGCACAAGCT-GCCCTTTGGTATGGGCACTTGCC
1 TCGACCACCATCGGCACAAGATGGCCC-CTGGTGCGGGCAGTTGCC
* * **
2805321 TCGACCACCATTGGCACAAGCTGGGTCCTGGTGCGGGCAGTTGCC
1 TCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCAGTTGCC
* *
2805366 TCGACCACCATCGGCACAAGATGGCCCCTGGTGCGAGCAGTTGCA
1 TCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCAGTTGCC
* *
2805411 TCGAACACCATCGACACA
1 TCGACCACCATCGGCACA
2805429 TGCCGAGCCC
Statistics
Matches: 91, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 89 0.98
46 2 0.02
ACGTcount: A:0.21, C:0.33, G:0.27, T:0.19
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCAGTTGCC
Found at i:2805987 original size:162 final size:161
Alignment explanation
Indices: 2805709--2806004 Score: 349
Period size: 162 Copynumber: 1.8 Consensus size: 161
2805699 GCTACCGGTC
* * * * *
2805709 TGATCTTAGACTGGGTATGAGCCCCATATCTTAGACTAGGAATGAACTCTGTATGCTTAAGTCAA
1 TGATCTTAGACTGGGAATGAACCCCATATCTTAGACTAGGAATGAACTCCGTATCCCTAAGTCAA
* ** * * * * * *
2805774 CACAAGAAATGACCATACGGGTGCTCAACCGATCGGGGAGGCAGGATGCGTAAGTCGAGGATCGA
66 CACAAGAAACGACCATACGGGCACTCAACAGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAA
2805839 CCCGGTCTCCATCTACATGCGACTGCAGGTA
131 CCCGGTCTCCATCTACATGCGACTGCAGGTA
* *
2805870 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCA
1 TGATCTTAGACTGGGAATGAACCCCATAT-CTTAGACTAGGAATGAACTCCGTATCCCTAAGTCA
* * * * * * * * * *
2805935 ACCCATGAAACGAGCATGCGGGCATTGAGCAGGCCGGAGAGGCATAATGCGTAAGCCGGGGATCA
65 ACACAAGAAACGACCATACGGGCACTCAACAGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCA
2806000 ACCCG
130 ACCCG
2806005 ATCCCCCTCT
Statistics
Matches: 108, Mismatches: 26, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
161 26 0.24
162 82 0.76
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.21
Consensus pattern (161 bp):
TGATCTTAGACTGGGAATGAACCCCATATCTTAGACTAGGAATGAACTCCGTATCCCTAAGTCAA
CACAAGAAACGACCATACGGGCACTCAACAGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAA
CCCGGTCTCCATCTACATGCGACTGCAGGTA
Found at i:2806475 original size:196 final size:194
Alignment explanation
Indices: 2806221--2806841 Score: 717
Period size: 196 Copynumber: 3.2 Consensus size: 194
2806211 CTCTCGATCC
* * * *
2806221 GATCCGATCTTAGACT-AGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAA
1 GATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAA
* * * * * * *
2806285 GTCAACCCACGAAATGAACGTGCGGGTGCTCAGCCGACCAGAGAGGCAGCATGCACAAGTCGAAG
66 GTCAACCCATGAAACGAGCGTGCGGG-GCTCAGCCGGCCAGAGAGGTAGCATGCGCAAG-CGAGG
** *
2806350 ATCGACCCTGTCCCCTCTACGTGCTGCTGATCCCGCTGTGAGTCTTGCTACCGCAACCCTCGGTC
129 ATCGACCCTGTCCTATCTACGTGCTGCTGATCCCGCTGTGAGTCTTGCTACCACAACCCTCGGTC
2806415 T
194 T
* * * *
2806416 GATCCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTAGGCATGAACACCGTATGCCTAA
1 GATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAA
* * * *
2806481 GTCAACCCATGAAACGAGCGTGCAGGCGCTCAGTCGGCTAGAGAGGTAGCATGCGTAAGCTGAGG
66 GTCAACCCATGAAACGAGCGTGC-GGGGCTCAGCCGGCCAGAGAGGTAGCATGCGCAAGC-GAGG
* * * ** * * * * *
2806546 ATCGACCTTGTCCTGTCTGCGTGCTGCCAATCCTGTTATGAGTCTTGCCATCACAACCCTCGGTC
129 ATCGACCCTGTCCTATCTACGTGCTGCTGATCCCGCTGTGAGTCTTGCTACCACAACCCTCGGTC
2806611 T
194 T
2806612 GATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAA
1 GATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAA
* * * *
2806677 GTCAACCTATGAAACGAGCGTGCGGGGCTCAACCGGCCAGAGAGGTAGGATGTGCAAGCCGAGGA
66 GTCAACCCATGAAACGAGCGTGCGGGGCTCAGCCGGCCAGAGAGGTAGCATGCGCAAG-CGAGGA
* * * * * *
2806742 TCGA-CCTGATCCTATCTTCGTGCTCCTGATCCCACTG-CAGGTCCTACTACCACAACCCTCGGT
130 TCGACCCTG-TCCTATCTACGTGCTGCTGATCCCGCTGTGA-GTCTTGCTACCACAACCCTCGGT
*
2806805 CC
193 CT
** * * * *
2806807 GATCTGATCTTAGATTGGGAGTGCACTACGTATGC
1 GATCCAATCTTAGACTGGGAATGAACTTCGTATGC
2806842 CTAAGTCAAC
Statistics
Matches: 355, Mismatches: 65, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
194 4 0.01
195 120 0.34
196 229 0.65
197 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.23
Consensus pattern (194 bp):
GATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACACCGTATGCCTAA
GTCAACCCATGAAACGAGCGTGCGGGGCTCAGCCGGCCAGAGAGGTAGCATGCGCAAGCGAGGAT
CGACCCTGTCCTATCTACGTGCTGCTGATCCCGCTGTGAGTCTTGCTACCACAACCCTCGGTCT
Found at i:2806656 original size:26 final size:26
Alignment explanation
Indices: 2806620--2806672 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2806610 CTGATCCAAT
**
2806620 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
2806646 CTTAGACTGGGGATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
2806672 C
1 C
2806673 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:2807803 original size:44 final size:43
Alignment explanation
Indices: 2807613--2807808 Score: 144
Period size: 45 Copynumber: 4.4 Consensus size: 43
2807603 GTATGGGCTC
* * * **
2807613 TTGCCTCGACTGCCAT-GGCACAAGCTGGGCCCTGGTACTTGCGG
1 TTGCCTCGAC-ACCATCGACACAAGCTGGG-CCTGGTGCGGGCGG
* * ** *
2807657 TTGCCTCGATCACCATCGACACATGCCGACCCTTGGTGCGGGCGA
1 TTGCCTCGA-CACCATCGACACAAGCTGGGCC-TGGTGCGGGCGG
* * *
2807702 TTGCCTCGACCACCATCGACTCAAGAT-GGCTCAGGTGCGGGCGG
1 TTGCCTCGA-CACCATCGACACAAGCTGGGC-CTGGTGCGGGCGG
* * * * *
2807746 TTGCATTGAACACCATCGGCACATGCTGGGCCGTGGTGCGGTCGG
1 TTGCCTCG-ACACCATCGACACAAGCTGGGCC-TGGTGCGGGCGG
2807791 TTGCCTCGACACCATCGA
1 TTGCCTCGACACCATCGA
2807809 TAAATGCCGA
Statistics
Matches: 115, Mismatches: 30, Indels: 14
0.72 0.19 0.09
Matches are distributed among these distances:
44 55 0.48
45 60 0.52
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (43 bp):
TTGCCTCGACACCATCGACACAAGCTGGGCCTGGTGCGGGCGG
Found at i:2808639 original size:26 final size:26
Alignment explanation
Indices: 2808588--2808640 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2808578 CTGGTCTGAT
* **
2808588 CTTATACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2808614 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2808640 C
1 C
2808641 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2809610 original size:45 final size:45
Alignment explanation
Indices: 2809556--2809678 Score: 113
Period size: 45 Copynumber: 2.7 Consensus size: 45
2809546 GGCTGCCCTT
* * * *
2809556 TGGTACGGGCACTTGCCTCGACCGCCATAGGCACAAGCTGGGCGC
1 TGGTACGGGCACTGGCCTCGACCACCATAGGCACAAGCTGGCCCC
* ** * * *
2809601 TGGTGCGGGCGGTGGCCTCGATCACCATCGGCACATGCTGGCCCC
1 TGGTACGGGCACTGGCCTCGACCACCATAGGCACAAGCTGGCCCC
* * *
2809646 TGGTACGGGCGA-TAGCCTCAACCACCATCGGCA
1 TGGTACGGGC-ACTGGCCTCGACCACCATAGGCA
2809679 TAAAATGGCC
Statistics
Matches: 62, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
45 62 1.00
ACGTcount: A:0.17, C:0.34, G:0.33, T:0.16
Consensus pattern (45 bp):
TGGTACGGGCACTGGCCTCGACCACCATAGGCACAAGCTGGCCCC
Found at i:2809650 original size:90 final size:90
Alignment explanation
Indices: 2809556--2809763 Score: 229
Period size: 90 Copynumber: 2.3 Consensus size: 90
2809546 GGCTGCCCTT
* ** * * * *
2809556 TGGTACGGGC-ACTTGCCTCGACCGCCATAGGCACAAGCTGGGCGCTGGTGCGGGCGGTGGCCTC
1 TGGTACGGGCGA-TTGCCTCGACCACCATAGGCACAAAATGGCCACTGGTGCGGGCGGTGACATC
* * *
2809620 GATCACCATCGGCACATGCTGGCCCC
65 GAACACCATCGACACATGCTGGCCCA
* * * * * *
2809646 TGGTACGGGCGATAGCCTCAACCACCATCGGCATAAAATGGCCACTGGTGCGGGTGGTTACATCG
1 TGGTACGGGCGATTGCCTCGACCACCATAGGCACAAAATGGCCACTGGTGCGGGCGGTGACATCG
*
2809711 AACACCATCGACACATGCTGGGCCA
66 AACACCATCGACACATGCTGGCCCA
* *
2809736 TGGTGCGGACGATTGCCTCGACCACCAT
1 TGGTACGGGCGATTGCCTCGACCACCAT
2809764 CGACACATGC
Statistics
Matches: 96, Mismatches: 21, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
90 95 0.99
91 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.18
Consensus pattern (90 bp):
TGGTACGGGCGATTGCCTCGACCACCATAGGCACAAAATGGCCACTGGTGCGGGCGGTGACATCG
AACACCATCGACACATGCTGGCCCA
Found at i:2809740 original size:45 final size:46
Alignment explanation
Indices: 2809685--2809773 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 46
2809675 GGCATAAAAT
** *
2809685 GGCCACTGGTGCGGGTGGTTACATCGAACACCATCGACACATGCTG
1 GGCCACTGGTGCGGACGATTACATCGAACACCATCGACACATGCTG
* * *
2809731 GGCCA-TGGTGCGGACGATTGCCTCGACCACCATCGACACATGC
1 GGCCACTGGTGCGGACGATTACATCGAACACCATCGACACATGC
2809774 AGAACCCCGG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 32 0.86
46 5 0.14
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.18
Consensus pattern (46 bp):
GGCCACTGGTGCGGACGATTACATCGAACACCATCGACACATGCTG
Found at i:2810253 original size:26 final size:26
Alignment explanation
Indices: 2810212--2810262 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
2810202 CCGATCTGAT
*
2810212 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2810238 CTTAGACTAGGG-ATGAACTCCGTAT
1 CTTAGACT-GGGAATGAACTCCGTAT
2810263 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2811391 original size:90 final size:90
Alignment explanation
Indices: 2811207--2811409 Score: 230
Period size: 90 Copynumber: 2.3 Consensus size: 90
2811197 GTACTGGCAC
* * * *
2811207 TTGCCTCGACCGCCATCGGCACAAGTTGGACCCTGGTGCGGGCGGTTGGCTCGATCACCATCGCC
1 TTGCCTCGACCACCATCGGCACAAGATGGACCCTGGTGCGGGCGGTTGACTCGAACACCATCGCC
* *
2811272 ACATACCGACCCTTGGTTCGGGTGA
66 ACATACCGACCCTTGGTGCGGGCGA
* * * * *
2811297 TTGCCTCAACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGGTT-ACATCGAACACCATTGG
1 TTGCCTCGACCACCATCGGCACAAGATGGACCCTGGTGCGGGCGGTTGAC-TCGAACACCATCGC
* * ** *
2811361 CACATGCTG-GGCTGTGGTGCGGGCGG
65 CACATACCGACCCT-TGGTGCGGGCGA
2811387 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
2811410 TACCGAGCCT
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
89 3 0.03
90 90 0.97
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGACCCTGGTGCGGGCGGTTGACTCGAACACCATCGCC
ACATACCGACCCTTGGTGCGGGCGA
Found at i:2811410 original size:45 final size:45
Alignment explanation
Indices: 2811207--2811410 Score: 183
Period size: 45 Copynumber: 4.5 Consensus size: 45
2811197 GTACTGGCAC
* * * *
2811207 TTGCCTCGACCGCCATCGGCACAAGTTGGACCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * * * * * * * *
2811252 TTGGCTCGATCACCATCGCCACATACCGACCCTTGGTTCGGGTGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * *
2811297 TTGCCTCAACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
* * * * * **
2811342 TTACATCGAACACCATTGGCACATGCTGGGCTGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
2811387 TTGCCTCGACCACCATCGGCACAT
1 TTGCCTCGACCACCATCGGCACAT
2811411 ACCGAGCCTC
Statistics
Matches: 118, Mismatches: 41, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
45 118 1.00
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGG
Found at i:2812247 original size:26 final size:26
Alignment explanation
Indices: 2812208--2812261 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
2812198 GATCCAATCT
*
2812208 TAGACTGAGAATGAACTTCATATGCC
1 TAGACTGAGAATGAACTCCATATGCC
*
2812234 TAGACTGACG-ATGAACTCCGTATGCC
1 TAGACTGA-GAATGAACTCCATATGCC
2812260 TA
1 TA
2812262 AGTCAACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCATATGCC
Found at i:2813304 original size:45 final size:45
Alignment explanation
Indices: 2813190--2813304 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 45
2813180 GTACGGGCAC
* * * * *
2813190 TTGCCTCAACCGCCATCGGGATAAGCTGGGCCCTGATGCGGGCGG
1 TTGCCTCAACCACCATCGGCACATGCCGGGCCCTGATGCGGGCGG
* * * *
2813235 TTGCATCGAA-CACCATCGGTACATGCCGGGCCGTGGTGCGGGCGG
1 TTGCCTC-AACCACCATCGGCACATGCCGGGCCCTGATGCGGGCGG
2813280 TTGCCTCAACCACCATCGGCACATG
1 TTGCCTCAACCACCATCGGCACATG
2813305 TCGAGCCTCG
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
44 2 0.03
45 54 0.93
46 2 0.03
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACATGCCGGGCCCTGATGCGGGCGG
Found at i:2813797 original size:26 final size:26
Alignment explanation
Indices: 2813745--2813797 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2813735 TCGATCCGAT
*
2813745 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
* *
2813771 CTTAGATTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
2813797 C
1 C
2813798 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:2814129 original size:26 final size:26
Alignment explanation
Indices: 2814100--2814152 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2814090 TCGGTCCGAT
2814100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2814126 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2814152 C
1 C
2814153 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2815254 original size:45 final size:45
Alignment explanation
Indices: 2815106--2815251 Score: 168
Period size: 45 Copynumber: 3.2 Consensus size: 45
2815096 GCCTCGACGG
* * * * *
2815106 CCATCGGCACAAGCTGAGCCCTGGTGCGGGCGGTTGGCTCGACCA
1 CCATCGGCACAAGCTGGGCCATGGTGCAGGCGGTTGCCTCAACCA
* * * * * *
2815151 CCATCGACACAAGATGGACCATGGTG-TGGACGGTTGCATCAAACA
1 CCATCGGCACAAGCTGGGCCATGGTGCAGG-CGGTTGCCTCAACCA
*
2815196 CCATCGGCACATGCTGGGCCATGGTGCAGGCGGTTGCCTCAACCA
1 CCATCGGCACAAGCTGGGCCATGGTGCAGGCGGTTGCCTCAACCA
2815241 CCATCGGCACA
1 CCATCGGCACA
2815252 TGCCGAGCCT
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
44 2 0.02
45 78 0.95
46 2 0.02
ACGTcount: A:0.22, C:0.32, G:0.30, T:0.16
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGGCCATGGTGCAGGCGGTTGCCTCAACCA
Found at i:2815723 original size:26 final size:26
Alignment explanation
Indices: 2815694--2815746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2815684 TCGATCCGAT
2815694 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* * *
2815720 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2815746 C
1 C
2815747 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:2816041 original size:15 final size:12
Alignment explanation
Indices: 2816006--2816039 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
2815996 ATGTTGTCGA
2816006 TCCTGCTGCTAG
1 TCCTGCTGCTAG
2816018 TCCTGCTGCTAG
1 TCCTGCTGCTAG
*
2816030 TCCTGTTGCT
1 TCCTGCTGCT
2816040 GCAACCATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.32, G:0.24, T:0.38
Consensus pattern (12 bp):
TCCTGCTGCTAG
Found at i:2818321 original size:45 final size:45
Alignment explanation
Indices: 2818279--2818486 Score: 254
Period size: 45 Copynumber: 4.6 Consensus size: 45
2818269 GTACGGGCAC
2818279 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * * * *
2818324 ATGCCTCGACCACCATCGACACAAGCTTGGCCCTGGTACGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
** * * *
2818369 TTGCCTCGACCACCATCACCACAAGATGGCCCTTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * * * *
2818414 TTGCATCGAACACGATCGGCACATGCTGGGTCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * *
2818459 TTGCCTCGACCACTATTGGCACATGCTG
1 TTGCCTCGACCACCATCGGCACAAGCTG
2818487 AGCCCCGATC
Statistics
Matches: 136, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
Found at i:2821341 original size:90 final size:90
Alignment explanation
Indices: 2821247--2821417 Score: 220
Period size: 90 Copynumber: 1.9 Consensus size: 90
2821237 TGATGGCGCA
**
2821247 TGGTGATGGCACATGCATCGACCATCATCGACACAAGTTG-CCCTTTGGTACGGGC-ACTTGCCT
1 TGGTGATGGCACATGCATCGACCATCATCGACACAAGCCGACCC-TTGGTACGGGCGA-TTGCCT
2821310 CGACCACCATCGGCACAAGCTGGGCCC
64 CGACCACCATCGGCACAAGCTGGGCCC
* ** * * * * *
2821337 TGGTGTTGGCAGTTGCCTCGATCATCATCGGCACATGCCGACCCTTGGTGCGGGCGATTGCCTCG
1 TGGTGATGGCACATGCATCGACCATCATCGACACAAGCCGACCCTTGGTACGGGCGATTGCCTCG
2821402 ACCACCATCGGCACAA
66 ACCACCATCGGCACAA
2821418 AATGGCCTCT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 65 0.94
91 4 0.06
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (90 bp):
TGGTGATGGCACATGCATCGACCATCATCGACACAAGCCGACCCTTGGTACGGGCGATTGCCTCG
ACCACCATCGGCACAAGCTGGGCCC
Found at i:2821353 original size:45 final size:45
Alignment explanation
Indices: 2821264--2821417 Score: 143
Period size: 45 Copynumber: 3.4 Consensus size: 45
2821254 GGCACATGCA
* * ** * *
2821264 TCGACCATCATCGACACAAGTTG-CCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCCGACCC-TTGGTGCGGGCAGTTGCC
* * **
2821309 TCGACCACCATCGGCACAAGCTGGGCCC-TGGTGTTGGCAGTTGCC
1 TCGACCACCATCGGCACAAGC-CGACCCTTGGTGCGGGCAGTTGCC
* * *
2821354 TCGATCATCATCGGCACATGCCGACCCTTGGTGCGGGC-GATTGCC
1 TCGACCACCATCGGCACAAGCCGACCCTTGGTGCGGGCAG-TTGCC
2821399 TCGACCACCATCGGCACAA
1 TCGACCACCATCGGCACAA
2821418 AATGGCCTCT
Statistics
Matches: 87, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
44 5 0.06
45 78 0.90
46 1 0.01
47 3 0.03
ACGTcount: A:0.19, C:0.34, G:0.26, T:0.21
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCCGACCCTTGGTGCGGGCAGTTGCC
Found at i:2821463 original size:90 final size:90
Alignment explanation
Indices: 2821291--2821465 Score: 201
Period size: 90 Copynumber: 1.9 Consensus size: 90
2821281 AAGTTGCCCT
** * ** *
2821291 TTGGTACGGGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTTGGCAGTTGCCTC
1 TTGGTACGGGCACTTGCCTCGACCACCATCGGCACAAAATGGGCCCTAGTGCAGGCAGTTGCATC
* *
2821356 GATCATCATCGGCACATGCCGACCC
66 GAACACCATCGGCACATGCCGACCC
* * *
2821381 TTGGTGCGGGCGA-TTGCCTCGACCACCATCGGCACAAAAT-GGCCTCTAGTGCAGGCGGTTGTA
1 TTGGTACGGGC-ACTTGCCTCGACCACCATCGGCACAAAATGGGCC-CTAGTGCAGGCAGTTGCA
* *
2821444 TCGAACACCATTGGTACATGCC
64 TCGAACACCATCGGCACATGCC
2821466 AGGCCATGGC
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
89 4 0.06
90 65 0.93
91 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.22
Consensus pattern (90 bp):
TTGGTACGGGCACTTGCCTCGACCACCATCGGCACAAAATGGGCCCTAGTGCAGGCAGTTGCATC
GAACACCATCGGCACATGCCGACCC
Found at i:2821811 original size:25 final size:26
Alignment explanation
Indices: 2821777--2821827 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
2821767 CGGTCTAATA
2821777 TTAGACTGGGAATGAAC-CCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
2821802 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
2821828 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:2823121 original size:45 final size:45
Alignment explanation
Indices: 2823048--2823211 Score: 141
Period size: 45 Copynumber: 3.6 Consensus size: 45
2823038 GTCTGCCCTT
* * **
2823048 TGGTGCGGGCATTTGCCTCGACTGCCATCAGCACAAGCTGGGCCC
1 TGGTGCGGGCAGTTGCCTCAACCACCATCAGCACAAGCTGGGCCC
* * * * * *
2823093 TGGTGCGGCCAGTTGCCTCAACCACCATCGGGACAAGATTGCCCC
1 TGGTGCGGGCAGTTGCCTCAACCACCATCAGCACAAGCTGGGCCC
** * * * * * *
2823138 TGGTATGGGCGGTTGCATCAAACACCATCAGCCCATGCTGGGCCG
1 TGGTGCGGGCAGTTGCCTCAACCACCATCAGCACAAGCTGGGCCC
*
2823183 TGGTGCGGG-AGGTTGCCTCGACCACCATC
1 TGGTGCGGGCA-GTTGCCTCAACCACCATC
2823212 GACACATGTC
Statistics
Matches: 88, Mismatches: 30, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TGGTGCGGGCAGTTGCCTCAACCACCATCAGCACAAGCTGGGCCC
Found at i:2824342 original size:168 final size:169
Alignment explanation
Indices: 2824053--2824360 Score: 388
Period size: 168 Copynumber: 1.8 Consensus size: 169
2824043 GGTCCGATTA
* * * * *
2824053 TAGATTGGTAATGAACTCCATATGCTTAGACTGGGGATGAATTCTGTATGCCTAAGTGAACCCAC
1 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
* * *
2824118 GAAACGAGCGTGCGGGCGCTCAACCGGCCGCAGAGGCAGGATGCGAAAGCCGAGGATC-GACCCG
66 GAAACGAGCGTGCAGGCACTCAACCGACCGCAGAGGCAGGATGCGAAAGCCGAGGATCAG-CCCG
2824182 AT-CCCCTCTGCGTGCTGCTGTCAATCTCGTTGCGGATCT
130 ATCCCCCTCTGCGTGCTGCTGTCAATCTCGTTGCGGATCT
*
2824221 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAT
1 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
* * * * ** ** * * * *
2824286 GAAATGATCGTTCAGGCACTGAGTCGATTGGAGAGGCA-TATTGCGCAAGTCGAGGATCAGCCCG
66 GAAACGAGCGTGCAGGCACTCAACCGACCGCAGAGGCAGGA-TGCGAAAGCCGAGGATCAGCCCG
2824350 ATCCCCCTCTG
130 ATCCCCCTCTG
2824361 TATGCTGTCG
Statistics
Matches: 116, Mismatches: 21, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
167 1 0.01
168 106 0.91
169 9 0.08
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (169 bp):
TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCAGGCACTCAACCGACCGCAGAGGCAGGATGCGAAAGCCGAGGATCAGCCCGA
TCCCCCTCTGCGTGCTGCTGTCAATCTCGTTGCGGATCT
Found at i:2825704 original size:45 final size:45
Alignment explanation
Indices: 2825581--2825707 Score: 139
Period size: 45 Copynumber: 2.8 Consensus size: 45
2825571 GCCTCGATTG
* * *
2825581 CCATCGGCACAAGCTAGGCCCTTGTGCGGGCGGTTGCCTCAATCA
1 CCATCGGCACAAGCTGGGCCCTAGTGCGGGCGGTTGCATCAATCA
* * * * *
2825626 CCATCGGCACAGGATGGCCCCTAGTACGAGCGGTTGCATCGAA-CA
1 CCATCGGCACAAGCTGGGCCCTAGTGCGGGCGGTTGCATC-AATCA
* * *
2825671 CCATCGGCACATGCTGGGCCATGGTGCGGGCGGTTGC
1 CCATCGGCACAAGCTGGGCCCTAGTGCGGGCGGTTGC
2825708 CTAGACCACC
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 64 0.97
46 2 0.03
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.18
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGGCCCTAGTGCGGGCGGTTGCATCAATCA
Found at i:2826218 original size:26 final size:26
Alignment explanation
Indices: 2826169--2826221 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2826159 CTGGTTCGAT
* * *
2826169 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACCGGGAATAAACTCCGTATG
*
2826195 CTTAGACCGGGAATAAACTTCGTATG
1 CTTAGACCGGGAATAAACTCCGTATG
2826221 C
1 C
2826222 CTATGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATAAACTCCGTATG
Found at i:2826552 original size:26 final size:26
Alignment explanation
Indices: 2826512--2826564 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2826502 CTGATCCGAT
*
2826512 CTTAGACTAGAAATGAGCTCAGTATG
1 CTTAGACTAGAAATGAACTCAGTATG
* *
2826538 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCAGTATG
2826564 C
1 C
2826565 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCAGTATG
Found at i:2826703 original size:26 final size:26
Alignment explanation
Indices: 2826674--2826726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2826664 TCGATCCGAT
2826674 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
2826700 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2826726 C
1 C
2826727 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2828073 original size:45 final size:45
Alignment explanation
Indices: 2828024--2828173 Score: 176
Period size: 45 Copynumber: 3.3 Consensus size: 45
2828014 GTACGGGCAC
* * *
2828024 TTGCCTCGACCGCCATCAGCACAAGTTGGGCCCTGGTGTGGGTGG
1 TTGCCTCGACCACCATCAGCACAAGATGGGCCCTGGTGTGGGCGG
2828069 TTGCCTCGACCACCATCAGCACAAGAT-GGCCCTTGGTGTGGGCGG
1 TTGCCTCGACCACCATCAGCACAAGATGGGCCC-TGGTGTGGGCGG
* * * * * * * * *
2828114 TTGCTTCTAACACCCTCAGCACATGCTGGGCCGTGGAGCGGGCGG
1 TTGCCTCGACCACCATCAGCACAAGATGGGCCCTGGTGTGGGCGG
2828159 TTGCCTCGACCACCA
1 TTGCCTCGACCACCA
2828174 CCATCGGTAC
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
44 5 0.06
45 78 0.90
46 4 0.05
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCAGCACAAGATGGGCCCTGGTGTGGGCGG
Found at i:2828105 original size:90 final size:91
Alignment explanation
Indices: 2828006--2828173 Score: 194
Period size: 90 Copynumber: 1.9 Consensus size: 91
2827996 GGCATAGGCT
* * * * * *
2828006 GCCCTTTGGTACGGGCACTTGCCTCGACCGCCATCAGCACAAGTTGGGCCCTGGTGTGGGTGGTT
1 GCCCTTTGGTACGGGCACTTGCCTCGAACACCATCAGCACAAGCTGGGCCCTGGAGCGGGCGGTT
2828071 GCCTCGACCACCATCAGCACAAGATG
66 GCCTCGACCACCATCAGCACAAGATG
** ** * * * * *
2828097 GCCC-TTGGTGTGGGCGGTTGCTTCTAACACCCTCAGCACATGCTGGGCCGTGGAGCGGGCGGTT
1 GCCCTTTGGTACGGGCACTTGCCTCGAACACCATCAGCACAAGCTGGGCCCTGGAGCGGGCGGTT
2828161 GCCTCGACCACCA
66 GCCTCGACCACCA
2828174 CCATCGGTAC
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
90 58 0.94
91 4 0.06
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (91 bp):
GCCCTTTGGTACGGGCACTTGCCTCGAACACCATCAGCACAAGCTGGGCCCTGGAGCGGGCGGTT
GCCTCGACCACCATCAGCACAAGATG
Found at i:2828667 original size:26 final size:26
Alignment explanation
Indices: 2828638--2828717 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
2828628 CCGGTCTGAT
*
2828638 CTTATATTGGGAATGAACTCTGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
* * * *
2828664 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGATTGGGAATGAACTCTGTATG
*
2828690 CTTAGACTTGGAAATGAACT-TCGTATG
1 CTTAGA-TTGGGAATGAACTCT-GTATG
2828717 C
1 C
2828718 CTAAGTTAAC
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
26 27 0.64
27 15 0.36
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCTGTATG
Found at i:2828714 original size:27 final size:25
Alignment explanation
Indices: 2828647--2828717 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 25
2828637 TCTTATATTG
*
2828647 GGAATGAACTCTGTATGCTTAGACTA
1 GGAATGAACTC-GTATGCTTAGACTT
*
2828673 GGAATGAACACCGTATGCTTAGACTT
1 GGAATGAAC-TCGTATGCTTAGACTT
2828699 GGAAATGAACTTCGTATGC
1 GG-AATGAAC-TCGTATGC
2828718 CTAAGTTAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 24 0.62
27 15 0.38
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (25 bp):
GGAATGAACTCGTATGCTTAGACTT
Found at i:2830173 original size:45 final size:45
Alignment explanation
Indices: 2830013--2830170 Score: 154
Period size: 45 Copynumber: 3.5 Consensus size: 45
2830003 GTATGAGAAC
* * * * * *
2830013 TTGCCTCGACCGCCATCGGCACAAGCTAGGCCTTGGTGTGGGTGG
1 TTGCCTCAACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * * *
2830058 TTGCCTCAACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGG
1 TTGCCTCAACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
* * ** * * *
2830103 TTGCATCAAACACCATTAGCACATGCTGGGCCATGGTGCAGGCAG
1 TTGCCTCAACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
*
2830148 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCAACCACCATCGGCACA
2830171 TGCCGAGCCC
Statistics
Matches: 88, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACAAGCTGGGCCATGGTGCGGGCGG
Found at i:2830665 original size:234 final size:234
Alignment explanation
Indices: 2830252--2830673 Score: 589
Period size: 234 Copynumber: 1.8 Consensus size: 234
2830242 AGCGACCAAG
* * * ** * * *
2830252 GATCCCGCTGTTGGTTCCCCTCGGTTGTTGCACCAAATGCCGTCGATAGCCTCTGGCCCTTGGTT
1 GATCCCGCTGCTGGTCCCCCTCAGTTGTTGCACCAAACACCATCGATAGCCTCGGGCCCTTGATT
* *
2830317 GGTCGAGACCGAGAATGCACTACGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCA
66 GGTCGAGACCGAGAATGCACTACGTATGCCTAAGTCAACACATGAAACGAGCATACGGGCACTCA
* * * * * * * *
2830382 GCCAACCGGAGAGCTAGAGTGCGTAAGTCGAGGATCGGCCCGATCCCCTTTTACGTGCGGCCACT
131 GCCAACCAGAAAGCCAGAATGCGCAAGCCGAGAATCGGCCCGATCCCCTTCTACGTGCGGCCACT
2830447 GAACCGACCGTTAGGGGCGGGATGCATGAGTTAACGAAA
196 GAACCGACCGTTAGGGGCGGGATGCATGAGTTAACGAAA
*
2830486 GATCCCGCTGCTGGTCCCCCTCAGTTGTTGCCCCAAACACCATCGATAGCCTCGGGCCCTTGATT
1 GATCCCGCTGCTGGTCCCCCTCAGTTGTTGCACCAAACACCATCGATAGCCTCGGGCCCTTGATT
* *
2830551 GGTCGAGACCGAGAATGCACTACGTATGCCTAAGTCAACACAT-AGAACGAGCGTACGGGCGCAT
66 GGTCGAGACCGAGAATGCACTACGTATGCCTAAGTCAACACATGA-AACGAGCATACGGGCAC-T
* *
2830615 -AGTCAACCAGAAAGCCAGAATGTGCAAGCCGAGAATCGGCCC-AGTCCCCTTCTACGTGC
129 CAGCCAACCAGAAAGCCAGAATGCGCAAGCCGAGAATCGGCCCGA-TCCCCTTCTACGTGC
2830674 TATCGATCCC
Statistics
Matches: 162, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
233 2 0.01
234 159 0.98
235 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (234 bp):
GATCCCGCTGCTGGTCCCCCTCAGTTGTTGCACCAAACACCATCGATAGCCTCGGGCCCTTGATT
GGTCGAGACCGAGAATGCACTACGTATGCCTAAGTCAACACATGAAACGAGCATACGGGCACTCA
GCCAACCAGAAAGCCAGAATGCGCAAGCCGAGAATCGGCCCGATCCCCTTCTACGTGCGGCCACT
GAACCGACCGTTAGGGGCGGGATGCATGAGTTAACGAAA
Found at i:2830878 original size:26 final size:26
Alignment explanation
Indices: 2830847--2830918 Score: 126
Period size: 26 Copynumber: 2.8 Consensus size: 26
2830837 CCAATCTGAT
2830847 CTTAGACTGGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATCTG
*
2830873 CTTAGACTTGGAATGAACTCCATCTG
1 CTTAGACTGGGAATGAACTCCATCTG
*
2830899 CTTAGACTGGGAATAAACTC
1 CTTAGACTGGGAATGAACTC
2830919 TGTATGCCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATCTG
Found at i:2831240 original size:26 final size:26
Alignment explanation
Indices: 2831210--2831288 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2831200 GCTGCCATAA
2831210 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2831236 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
2831262 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2831288 C
1 C
2831289 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2832210 original size:45 final size:45
Alignment explanation
Indices: 2832049--2832221 Score: 152
Period size: 45 Copynumber: 3.8 Consensus size: 45
2832039 GGCTGCCCTT
* * *
2832049 TGGTACGGGCACTTGCCTCGACCACCATCGACAGATGCTGGGCCC
1 TGGTACGGGCAGTTGCCTCGACCACCATCGGCACATGCTGGGCCC
* * * * * *
2832094 TGGTGC-GGCTGGTTGCCTCGACCACCATTGGCACAAGATGGCCCC
1 TGGTACGGGC-AGTTGCCTCGACCACCATCGGCACATGCTGGGCCC
* ** * * * **
2832139 CGGTTTGGGC-GATTGCATCGAACACCATCGGCAGATGCTGGGCTA
1 TGGTACGGGCAG-TTGCCTCGACCACCATCGGCACATGCTGGGCCC
*
2832184 TGGTACGGGCAGTTGCCTCGACCACCATCAGCACATGC
1 TGGTACGGGCAGTTGCCTCGACCACCATCGGCACATGC
2832222 CGAGCCCCGA
Statistics
Matches: 96, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
44 4 0.04
45 88 0.92
46 4 0.04
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TGGTACGGGCAGTTGCCTCGACCACCATCGGCACATGCTGGGCCC
Found at i:2832645 original size:12 final size:12
Alignment explanation
Indices: 2832628--2832659 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
2832618 TGAGGCATAG
2832628 GGGGCCAATATA
1 GGGGCCAATATA
2832640 GGGGCCAATATA
1 GGGGCCAATATA
*
2832652 AGGGCCAA
1 GGGGCCAA
2832660 GTACTAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:2833079 original size:45 final size:45
Alignment explanation
Indices: 2832919--2833076 Score: 210
Period size: 45 Copynumber: 3.5 Consensus size: 45
2832909 ATAAGAGCAC
* *
2832919 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTAGGCGG
*
2832964 TTGCCTCGACCACCATCGGCACAAGAT-GGCCCTTGGTGTAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCC-TGGTGTAGGCGG
* * * * * * *
2833009 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGCAGGTGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTAGGCGG
2833054 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
2833077 TGCCGAGCCT
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
44 5 0.05
45 89 0.91
46 4 0.04
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGTAGGCGG
Found at i:2833474 original size:26 final size:26
Alignment explanation
Indices: 2833436--2833488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2833426 TCGGTCCGAT
*
2833436 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
2833462 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
2833488 C
1 C
2833489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:2838327 original size:45 final size:45
Alignment explanation
Indices: 2838219--2838357 Score: 140
Period size: 45 Copynumber: 3.1 Consensus size: 45
2838209 CTGCCATTGG
*
2838219 CACAAGCTGGGCCCA-GGTGCGGGTGGTTGCCTC-AACCACCAAC-A
1 CACAAGCTGGG-CCATGGTGCGGGTGGTTGCCTCGAA-CACCATCGA
* * * *
2838263 GCACAAGATGGCCCCTGGTGCGGGTGGTTGCATCGAACACCATCGA
1 -CACAAGCTGGGCCATGGTGCGGGTGGTTGCCTCGAACACCATCGA
* * * * *
2838309 CACATGCTGGGCCATGGTGCGGGCGATTGCCTCGACCAGCATCGA
1 CACAAGCTGGGCCATGGTGCGGGTGGTTGCCTCGAACACCATCGA
2838354 CACA
1 CACA
2838358 TATCGAGCCC
Statistics
Matches: 77, Mismatches: 14, Indels: 6
0.79 0.14 0.06
Matches are distributed among these distances:
44 2 0.03
45 72 0.94
46 3 0.04
ACGTcount: A:0.22, C:0.32, G:0.31, T:0.16
Consensus pattern (45 bp):
CACAAGCTGGGCCATGGTGCGGGTGGTTGCCTCGAACACCATCGA
Found at i:2838851 original size:26 final size:26
Alignment explanation
Indices: 2838800--2838851 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
2838790 CCGATCCGAT
* * *
2838800 CTTAGATTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATAAACACCATATG
*
2838826 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACACCATATG
2838852 ACTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACACCATATG
Found at i:2839185 original size:26 final size:26
Alignment explanation
Indices: 2839156--2839208 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2839146 CCAGTCCGAT
2839156 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
** * *
2839182 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
2839208 C
1 C
2839209 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:2840200 original size:45 final size:45
Alignment explanation
Indices: 2840151--2840263 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
2840141 GTACAGGCAC
* * * *
2840151 TTGCCTCGACCGCGATCGGCACAAGTTGGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
*
2840196 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
* * * *
2840241 TTACATCGAACACCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
2840264 TGCTGGGAGG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
Found at i:2841077 original size:25 final size:26
Alignment explanation
Indices: 2841027--2841078 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
2841017 CCAGTCTGAT
2841027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2841053 CTTAGACTGGG-TTGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2841078 C
1 C
2841079 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2842185 original size:26 final size:26
Alignment explanation
Indices: 2842156--2842208 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2842146 CTGGTCTGAT
*
2842156 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
2842182 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2842208 C
1 C
2842209 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:2845091 original size:45 final size:45
Alignment explanation
Indices: 2845041--2845188 Score: 133
Period size: 45 Copynumber: 3.3 Consensus size: 45
2845031 TTGCCTTGAT
2845041 CACCATCGACACAATTTGGGCCCTAGTGTGGGCTGTTGGCTCGAC
1 CACCATCGACACAATTTGGGCCCTAGTGTGGGCTGTTGGCTCGAC
* ** * * * *
2845086 CACCATCGGCACAAGATGGCCCCTGGTATGGGC-GATT-GCATCGAA
1 CACCATCGACACAATTTGGGCCCTAGTGTGGGCTG-TTGGC-TCGAC
* * *
2845131 CACCATCTACA-AATGTTGGGCCGTAGTGTGGG-TAGTTGCCTCGAC
1 CACCATCGACACAAT-TTGGGCCCTAGTGTGGGCT-GTTGGCTCGAC
*
2845176 CACCATCGGCACA
1 CACCATCGACACA
2845189 TGTCGAGCCC
Statistics
Matches: 77, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
44 5 0.06
45 69 0.90
46 3 0.04
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.22
Consensus pattern (45 bp):
CACCATCGACACAATTTGGGCCCTAGTGTGGGCTGTTGGCTCGAC
Found at i:2845791 original size:174 final size:175
Alignment explanation
Indices: 2845494--2845970 Score: 536
Period size: 178 Copynumber: 2.7 Consensus size: 175
2845484 TCCGGTTGGG
* * * * *
2845494 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGTGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTGAG
* * ** *
2845559 CCGACTGGAGAGGCA-AGATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCT-G-
66 CCGACCGGAGAGGCATA-ATGCGCAAGC-GGGGATCAACCCGATCCCCCTCTGCGTGCTGCTCGA
* * * *
2845621 CCGATCTCGCTGCCGGTCCAATCTCAGACTGGGAATGAACTCCT-TAT
129 CCGATCTCACTGCCGATACAACCTCAGACTGGGAATGAACT-CTGTAT
* *
2845668 GCTTAGA-TGGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGAGCTGA
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTGA
* *
2845732 GCCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAACCCGATCCCCCTCTACGTGCTGCTGCC
65 GCCGACCGGAGAGGCATAATGCGCAAG-CGGGGATCAACCCGATCCCCCTCTGCGTGCTGCT--C
* * ** *
2845797 GACCGATCTCATTGTCGATATGACCTTAGACTGGGAATGAACTCTGTAT
127 GACCGATCTCACTGCCGATACAACCTCAGACTGGGAATGAACTCTGTAT
* * *
2845846 GCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCCCGAAATGAGCGTGCGGGCA-CTGA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGG-AGCTGA
* * *
2845910 GCCAGTCC-GAGAGGCATTATGCGCACAAGCCGGGGATCAACCTGATCCCCCTCTGCGTGCT
65 GCC-GACCGGAGAGGCATAATGCG--CAAG-CGGGGATCAACCCGATCCCCCTCTGCGTGCT
2845971 ATCGATCCTA
Statistics
Matches: 256, Mismatches: 34, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
173 1 0.00
174 106 0.41
175 2 0.01
177 3 0.01
178 107 0.42
179 5 0.02
180 32 0.12
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (175 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTGAG
CCGACCGGAGAGGCATAATGCGCAAGCGGGGATCAACCCGATCCCCCTCTGCGTGCTGCTCGACC
GATCTCACTGCCGATACAACCTCAGACTGGGAATGAACTCTGTAT
Found at i:2845853 original size:26 final size:26
Alignment explanation
Indices: 2845821--2845873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2845811 TCGATATGAC
* *
2845821 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
2845847 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
2845873 C
1 C
2845874 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:2845893 original size:178 final size:172
Alignment explanation
Indices: 2845494--2845970 Score: 523
Period size: 174 Copynumber: 2.7 Consensus size: 172
2845484 TCCGGTTGGG
* * * *
2845494 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACAGGTGCTCAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTGAG
* * ** *
2845559 CCGACTGGAGAGGCA-AGATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGCC
65 CCGACCGGAGAGGCATA-ATGCGCAAGC-GGGGATCAACCCGATCCCCCTCTGCGTGCTGCTGCC
* * * *
2845623 GATCTCGCTGCCGGTCCAATCTCAGACTGGGAATGAACTCCTTAT
128 GATCTCACTGCCGATACAACCTCAGACTGGGAATGAACTCCTTAT
* *
2845668 GCTTAGA-TGGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTATGGGAGCTGA
1 GCTTAGACT--GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTGA
* *
2845732 GCCGACCGGAGAGGCATAATGCGTAAGTCGGGGATCAACCCGATCCCCCTCTACGTGCTGCTGCC
64 GCCGACCGGAGAGGCATAATGCGCAAG-CGGGGATCAACCCGATCCCCCTCTGCGTGCTGCT---
* * ** *
2845797 GACCGATCTCATTGTCGATATGACCTTAGACTGGGAATGAACT-CTGTAT
125 G-CCGATCTCACTGCCGATACAACCTCAGACTGGGAATGAACTCCT-TAT
* *
2845846 GCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCCCGAAATGAGCGTGCGGGCA-CTGA
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGG-AGCTGA
* * *
2845910 GCCAGTCC-GAGAGGCATTATGCGCACAAGCCGGGGATCAACCTGATCCCCCTCTGCGTGCT
64 GCC-GACCGGAGAGGCATAATGCG--CAAG-CGGGGATCAACCCGATCCCCCTCTGCGTGCT
2845971 ATCGATCCTA
Statistics
Matches: 256, Mismatches: 32, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
172 1 0.00
174 106 0.41
175 2 0.01
177 4 0.02
178 106 0.41
179 5 0.02
180 32 0.12
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (172 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGAGCTGAGC
CGACCGGAGAGGCATAATGCGCAAGCGGGGATCAACCCGATCCCCCTCTGCGTGCTGCTGCCGAT
CTCACTGCCGATACAACCTCAGACTGGGAATGAACTCCTTAT
Found at i:2846370 original size:26 final size:26
Alignment explanation
Indices: 2846319--2846371 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2846309 TCGGTTCGAT
* * *
2846319 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2846345 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
2846371 C
1 C
2846372 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2847690 original size:45 final size:44
Alignment explanation
Indices: 2847638--2847800 Score: 148
Period size: 45 Copynumber: 3.6 Consensus size: 44
2847628 GTACGGGCAC
2847638 TTGCCTCGACCACCATCGGCACAAGCTAGGCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCAGGCGG
** * * * * *
2847683 TCACCTCGACCACCATCAGCATAAGATGGCCCCTGGTGCAGCCAG
1 TTGCCTCGACCACCATCGGCACAAGCTGG-CCCTGGTGCAGGCGG
* * * ** *
2847728 TTGCATCGAACATCATCGGCACGTGCTGGGCCGTGGTGC-GGACGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGCAGG-CGG
* *
2847773 TTGCCTCGACCACCATTGGCACATGCTG
1 TTGCCTCGACCACCATCGGCACAAGCTG
2847801 AGCCTCGGTC
Statistics
Matches: 90, Mismatches: 25, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
44 4 0.04
45 84 0.93
46 2 0.02
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGCAGGCGG
Found at i:2848601 original size:26 final size:26
Alignment explanation
Indices: 2848565--2848617 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2848555 CTAATCTGAT
2848565 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2848591 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2848617 C
1 C
2848618 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2849606 original size:45 final size:45
Alignment explanation
Indices: 2849557--2849714 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
2849547 GTACGGGCAC
*
2849557 TTGCCTCGACCGCCATCGACACAAGCTAGGCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTAGGCCCTGGTGCAGGCGG
* * * ** *
2849602 TTGCCTCAACCACCATCCACACAAG-TTGGCCCCTGGTATAGGCAG
1 TTGCCTCGACCACCATCGACACAAGCTAGG-CCCTGGTGCAGGCGG
* * * * * ** * *
2849647 TTGCATCGAACACCATCGGCACATGCTGGGCTGTGGTGCGGGCGA
1 TTGCCTCGACCACCATCGACACAAGCTAGGCCCTGGTGCAGGCGG
*
2849692 TTGCCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGACACA
2849715 TGTCAAGCCT
Statistics
Matches: 88, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
44 3 0.03
45 82 0.93
46 3 0.03
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGCTAGGCCCTGGTGCAGGCGG
Found at i:2849639 original size:90 final size:90
Alignment explanation
Indices: 2849545--2849708 Score: 202
Period size: 90 Copynumber: 1.8 Consensus size: 90
2849535 AGCTGCCCTT
* * * * *
2849545 TGGTACGGGCACTTGCCTCGACCGCCATCGACACAAGCTAGGCCCTGGTGCAGGCGGTTGCCTCA
1 TGGTACAGGCACTTGCATCGAACACCATCGACACAAGCTAGGCCCTGGTGCAGGCGATTGCCTCA
2849610 ACCACCATCCACACAAGTTGGCCCC
66 ACCACCATCCACACAAGTTGGCCCC
* * * * * ** * *
2849635 TGGTATAGGCAGTTGCATCGAACACCATCGGCACATGCTGGGCTGTGGTGCGGGCGATTGCCTCG
1 TGGTACAGGCACTTGCATCGAACACCATCGACACAAGCTAGGCCCTGGTGCAGGCGATTGCCTCA
2849700 ACCACCATC
66 ACCACCATC
2849709 GGCACATGTC
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 60 1.00
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.19
Consensus pattern (90 bp):
TGGTACAGGCACTTGCATCGAACACCATCGACACAAGCTAGGCCCTGGTGCAGGCGATTGCCTCA
ACCACCATCCACACAAGTTGGCCCC
Found at i:2850305 original size:159 final size:159
Alignment explanation
Indices: 2850011--2850355 Score: 414
Period size: 159 Copynumber: 2.2 Consensus size: 159
2850001 TCGGTCCGAT
**
2850011 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCAGATGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGATGCTAAGC
* * * * *
2850076 CAGTCATAGAGGCATAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCGGTCT
66 CAGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTACGTGCTATCGATCT
*
2850141 CGCTGCCACAACCCTCGGTCCAG-CTAGGG
131 CGCTGCCACAACCCTCGGTCCAGTCT-GAG
* * *
2850170 CTTAGACAT-GGAATGAACTCCGTATG-TTGAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCT-AAGCCAACCCATGAAACGAGCGTGCAGATGCT-A
* * * * *
2850233 ATCGA-TCGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCC-GAT-CCCCTCCTACGTGCTATC
63 AGCCAGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAG-TCCCCCT-CTACGTGCTATC
* * * *
2850295 GATCTTGCTGCCGCAACCCTCGGTCCGGTCTGAT
126 GATCTCGCTGCCACAACCCTCGGTCCAGTCTGAG
2850329 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
2850356 TTAGACTGGG
Statistics
Matches: 158, Mismatches: 20, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
158 8 0.05
159 143 0.91
160 7 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGATGCTAAGC
CAGTCAGAGAGGCAGAATGCGCAAGCCAGGGATCAGCCCAGTCCCCCTCTACGTGCTATCGATCT
CGCTGCCACAACCCTCGGTCCAGTCTGAG
Found at i:2850358 original size:26 final size:26
Alignment explanation
Indices: 2850329--2850381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2850319 CCGGTCTGAT
2850329 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2850355 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2850381 C
1 C
2850382 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2851471 original size:45 final size:45
Alignment explanation
Indices: 2851421--2851516 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 45
2851411 CCCCACAATT
*
2851421 GGCACAAGGTGGCCCCG-GGAACGGGCGGTTGCATCAAACACCATC
1 GGCACAAGCTGG-CCCGTGGAACGGGCGGTTGCATCAAACACCATC
* ** * * *
2851466 GGCACAAGCTGGGCCGTGGTGCGGGCGGTTGCCTCGACCACCATC
1 GGCACAAGCTGGCCCGTGGAACGGGCGGTTGCATCAAACACCATC
2851511 GGCACA
1 GGCACA
2851517 TGCCAAGCCC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 3 0.07
45 40 0.93
ACGTcount: A:0.20, C:0.32, G:0.35, T:0.12
Consensus pattern (45 bp):
GGCACAAGCTGGCCCGTGGAACGGGCGGTTGCATCAAACACCATC
Found at i:2852024 original size:26 final size:25
Alignment explanation
Indices: 2851966--2852016 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
2851956 CCACTGTCGG
2851966 TCTGAT-CTTAGACTGGGAATGAAC
1 TCTGATGCTTAGACTGGGAATGAAC
*
2851990 TCTGGATGCTTAGTCTGGGAATGAAC
1 TCT-GATGCTTAGACTGGGAATGAAC
2852016 T
1 T
2852017 TCATATGCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 3 0.12
25 3 0.12
26 18 0.75
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.31
Consensus pattern (25 bp):
TCTGATGCTTAGACTGGGAATGAAC
Found at i:2853050 original size:42 final size:42
Alignment explanation
Indices: 2852993--2853076 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
2852983 GCTCTTTAAG
2852993 GGGGTGTGAGTTCTCAGGGTTTGATGACGGATAGGGGGCCAA
1 GGGGTGTGAGTTCTCAGGGTTTGATGACGGATAGGGGGCCAA
*
2853035 GGGGTGTGAGTTCTCAGGGTTTGATGATGGATAGGGGGCCAA
1 GGGGTGTGAGTTCTCAGGGTTTGATGACGGATAGGGGGCCAA
2853077 TATAAGGGCC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.19, C:0.11, G:0.45, T:0.25
Consensus pattern (42 bp):
GGGGTGTGAGTTCTCAGGGTTTGATGACGGATAGGGGGCCAA
Found at i:2859037 original size:45 final size:45
Alignment explanation
Indices: 2858951--2859071 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 45
2858941 CCTAGCGTGA
* * * * *
2858951 GCGGTTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCCTGGTGCAG
* * ** *
2858996 GCGGTTGCATCGAACACCATCGGCACATGCTGGGCTGTGGTGTAG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCCTGGTGCAG
* *
2859041 ACGGTTGCCTC-AACCACCATCGGCATATGCT
1 GCGGTTGCCTCGAA-CACCATCGGCACATGCT
2859072 AAGCCCCAGT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
44 2 0.03
45 60 0.97
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
GCGGTTGCCTCGAACACCATCGGCACATGCTGGCCCCTGGTGCAG
Found at i:2859388 original size:26 final size:26
Alignment explanation
Indices: 2859352--2859402 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2859342 TCAATCCGAT
*
2859352 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2859378 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
2859403 ACCAAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2859760 original size:26 final size:26
Alignment explanation
Indices: 2859709--2859761 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2859699 TCGGTTCGAT
* *
2859709 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
2859735 CTTAGACTGGGGATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
2859761 C
1 C
2859762 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:2866595 original size:45 final size:45
Alignment explanation
Indices: 2866546--2866675 Score: 125
Period size: 45 Copynumber: 2.9 Consensus size: 45
2866536 GCCTCGTCCG
* * * *
2866546 CCATCAACACAAGCTAGGCCCTGGTGTGGGCGGTTGCCTTGACCA
1 CCATCAGCACAAGCTAGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * * * *
2866591 CCATCGGCATAAGATTGCCCCTGGTGCGGGTGGTTGCCTCGAACA
1 CCATCAGCACAAGCTAGGCCCTGGTGCGGGCGGTTGCCTCGAACA
* * * * *
2866636 CCATCAGCACATGCTGGGCCATGGTGCGAGCAGTTGCCTC
1 CCATCAGCACAAGCTAGGCCCTGGTGCGGGCGGTTGCCTC
2866676 AACCATCATC
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
CCATCAGCACAAGCTAGGCCCTGGTGCGGGCGGTTGCCTCGAACA
Found at i:2867173 original size:26 final size:26
Alignment explanation
Indices: 2867134--2867186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2867124 CCGGTCTGAT
*
2867134 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
2867160 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
2867186 C
1 C
2867187 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:2867525 original size:45 final size:45
Alignment explanation
Indices: 2867436--2867542 Score: 124
Period size: 45 Copynumber: 2.4 Consensus size: 45
2867426 TTACAGACAC
* * * * * *
2867436 TTGCCTCGATCGCCATCGGCACAAGTTGGGCCTTGGTGCAGGTGG
1 TTGCCTCGAACACCATCGGCACAAGATGGCCCCTGGTACAGGTGG
* **
2867481 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTATGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGATGGCCCCTGGTACAGGTGG
*
2867526 TTGCATCGAACACCATC
1 TTGCCTCGAACACCATC
2867543 TGCAAGTGCT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACAAGATGGCCCCTGGTACAGGTGG
Found at i:2868121 original size:26 final size:26
Alignment explanation
Indices: 2868071--2868123 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2868061 CTGATCTGAT
* **
2868071 CTTAGATTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2868097 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2868123 C
1 C
2868124 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2868267 original size:196 final size:196
Alignment explanation
Indices: 2867913--2868278 Score: 457
Period size: 196 Copynumber: 1.9 Consensus size: 196
2867903 TAGAAATGGA
** * ** * *
2867913 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGGCAGAGAGG
* * * * * * *
2867978 CAGAATGCGTAAGCCGGGGATCAACCCGGTCCCCCTTATATGCTATCGATCCTGCTGCTGGTCCT
66 CAGAATACGAAAGCCGGGGATCAACCCGATCCCCCTGATATGCTATCGATCCCGCTACGGGTCCT
** * * *
2868043 GCTGTCACAACCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACTTTGTATGCTTAGACTGGG
131 GCTACCACAACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGG
2868108 G
196 G
*
2868109 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGGCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGGCAGAGAGG
* * * * *
2868174 TAGGATACGAAAGCCGGGGATCGACCCGATCCCCTCTGCT-TGCTGTCGATCCCGCTACGGGTCC
66 CAGAATACGAAAGCCGGGGATCAACCCGATCCCC-CTGATATGCTATCGATCCCGCTACGGGTCC
* *
2868238 TGCTACCGCAACCTTCAGTCCAG-TCTGATCTTAGACTGGGA
130 TGCTACCACAACCCTCAGT-CAGATCTGATCTTAGACTGGGA
2868279 GCGCACTACG
Statistics
Matches: 141, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
196 136 0.96
197 5 0.04
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (196 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCAACCAGGCAGAGAGG
CAGAATACGAAAGCCGGGGATCAACCCGATCCCCCTGATATGCTATCGATCCCGCTACGGGTCCT
GCTACCACAACCCTCAGTCAGATCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGG
G
Found at i:2869214 original size:45 final size:44
Alignment explanation
Indices: 2869068--2869215 Score: 125
Period size: 45 Copynumber: 3.3 Consensus size: 44
2869058 GGGCACTTGA
* ** **
2869068 CTCGACCGCCATCGGCACAAGCTGGGCTCTGGTGCTAGCAGTTGC
1 CTCGACCACCATCGGCACAAGCTGGGC-CTGGTGCGGGTGGTTGC
* * * * * *
2869113 CTCTACCACCATCGGCACAAGATGGCCCCTGATGTGGGTGGTTAC
1 CTCGACCACCATCGGCACAAGCTGG-GCCTGGTGCGGGTGGTTGC
* ** *
2869158 ATCGAATACCATCGGCACATGCTGGGCCATGGTGCGGGTGGTTGC
1 CTCGACCACCATCGGCACAAGCTGGGCC-TGGTGCGGGTGGTTGC
*
2869203 CTAGACCACCATC
1 CTCGACCACCATC
2869216 AGTACATGTC
Statistics
Matches: 76, Mismatches: 25, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
44 2 0.03
45 73 0.96
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (44 bp):
CTCGACCACCATCGGCACAAGCTGGGCCTGGTGCGGGTGGTTGC
Found at i:2869712 original size:26 final size:26
Alignment explanation
Indices: 2869663--2869715 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2869653 CTGGTCCGAT
* *
2869663 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
2869689 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2869715 C
1 C
2869716 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:2870047 original size:26 final size:26
Alignment explanation
Indices: 2870006--2870058 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2869996 CCGATCTGAT
*
2870006 CTTAGACTAGAAATGAGCTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
** *
2870032 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
2870058 C
1 C
2870059 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:2870197 original size:26 final size:26
Alignment explanation
Indices: 2870168--2870220 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2870158 TCGATCCGAT
2870168 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
2870194 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2870220 C
1 C
2870221 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2871677 original size:45 final size:45
Alignment explanation
Indices: 2871518--2871669 Score: 196
Period size: 45 Copynumber: 3.4 Consensus size: 45
2871508 GTACGGGCAC
* * *
2871518 TTGCCTCGACCGCCATCAGCACAAGCTGGGCCCTGGTGTGGGTGG
1 TTGCCTCGACCACCATCAGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * *
2871563 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCAGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
2871608 TTGCCTCTAACACCCTCAGCACATGCTGGGCCGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCAGCACAAGCTGGGCCCTGGTGCGGGCGG
2871653 TTGCCTCGACCACCATC
1 TTGCCTCGACCACCATC
2871670 GGTACATGAC
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.15, C:0.35, G:0.31, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCAGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:2872159 original size:26 final size:26
Alignment explanation
Indices: 2872130--2872208 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
2872120 CCGGTCTGAT
* *
2872130 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
* *
2872156 CTTAGACTAGGAATGAACACCGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
2872182 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
2872208 C
1 C
2872209 CTAAGTTAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:2872547 original size:26 final size:26
Alignment explanation
Indices: 2872511--2872563 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2872501 CTGGTCTGAT
*
2872511 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
2872537 CTTAGACTGGGGATGACCTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
2872563 C
1 C
2872564 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:2873664 original size:45 final size:45
Alignment explanation
Indices: 2873504--2873661 Score: 154
Period size: 45 Copynumber: 3.5 Consensus size: 45
2873494 GTACGAGAAC
* * * * *
2873504 TTGCCTCGACCGCCATCGGCACAAGCTAGGCCTTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
2873549 TTGCCTCAACCACCATCGACACAAGATGGCCCCTAGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * ** * * *
2873594 TTGCATCGAACACCATTAGCACATGCTGGGCCGTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
*
2873639 TTGCCTCGACCACCATTGGCACA
1 TTGCCTCGACCACCATCGGCACA
2873662 TGCCGAGCCC
Statistics
Matches: 88, Mismatches: 25, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 88 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:2874732 original size:26 final size:26
Alignment explanation
Indices: 2874691--2874743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2874681 CTGGTTTGAT
2874691 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
2874717 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2874743 C
1 C
2874744 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2876055 original size:12 final size:12
Alignment explanation
Indices: 2876038--2876069 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
2876028 TGAGGGATAG
2876038 GGGGCCAATATA
1 GGGGCCAATATA
2876050 GGGGCCAATATA
1 GGGGCCAATATA
*
2876062 AGGGCCAA
1 GGGGCCAA
2876070 GTACTAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:2876488 original size:44 final size:44
Alignment explanation
Indices: 2876329--2876485 Score: 170
Period size: 45 Copynumber: 3.5 Consensus size: 44
2876319 ATACGAGCAC
*
2876329 TTGCCTCGACCGCCATCGACACAAGCTGGGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCT-GGCCCTGGTGTGGGCGG
* * *
2876374 TTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGG-CCCTGGTGTGGGCGG
* * * ** * * ** *
2876419 TTGCATCGAACACCATTGGTACATGCTGGCCGTGGTGCAGGCGA
1 TTGCCTCGACCACCATCGACACAAGCTGGCCCTGGTGTGGGCGG
2876463 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGACACA
2876486 TGCCGAGCCT
Statistics
Matches: 91, Mismatches: 20, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
44 31 0.34
45 60 0.66
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.19
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGACACAAGCTGGCCCTGGTGTGGGCGG
Done.