Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 26 of 120
Found at i:2876883 original size:26 final size:26
Alignment explanation
Indices: 2876845--2876897 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2876835 TCGGTCCGAT
*
2876845 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
2876871 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2876897 C
1 C
2876898 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2876986 original size:162 final size:159
Alignment explanation
Indices: 2876790--2877311 Score: 415
Period size: 162 Copynumber: 3.3 Consensus size: 159
2876780 TAGAGGTAGG
* *
2876790 ATGCGCAAGTC-GAGGATCGACCTGGTCCCCCTCTGCATGCTACTGTCGGTCCGATCTTAGACTA
1 ATGCGCAAGCCAG-GGATCGACC-GGTCCCCCTCTGCGTGCTACT-TCGGTCCGATCTTAGACTA
* * *
2876854 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACAA
63 GGAATGAACTTCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAA
* *
2876919 GCGTGCGGGCATTGAGCAGGCCGGAGAGGCATA
128 GCGTGCGGGCA-TAAGCAGGTCGGAGAGGCATA
* * *
2876952 ATGCGCAAGCCAGGGATCGACTCGGTCCCCCTCTGCGTGCTA--TCGGCACCGCTGCCATA-ACC
1 ATGCGCAAGCCAGGGATCGAC-CGGTCCCCCTCTGCGTGCTACTTCGG-TCCGAT--CTTAGA--
* *** * * *
2877014 CTTGGTCCG-AC-T-G--GGCTTAGACAT-GGAATGAACTCGGTATGCCTAAGCCAACCCACGAA
60 CTAGGAATGAACTTCGTACGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
2877073 ATGAGCGTGCGAGGGC-TCAGCTGATCGAAGAGGCAGA
124 ATAAGCGTGC--GGGCATAAGCAGGTCGGAGAGGCATA
* * * * * * * *
2877110 ATGCGCAAGCCAAGGATCGGCCCGGTCCCCCTTTGTGTCCTGCTACCGGTCTGATCTTAGACTAG
1 ATGCGCAAGCCAGGGATC-GACCGGTCCCCCTCTGCGTGCTACT-TCGGTCCGATCTTAGACTAG
* * *
2877175 GAATGAACTTCATACGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATAAG
64 GAATGAACTTCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAG
* *
2877240 CGTACGAGCACTAAGCCA-GTCGGAGAGGCATA
129 CGTGCGGGCA-TAAG-CAGGTCGGAGAGGCATA
** * *
2877272 ATGCATAAGCCTA-GTACCAGACCGGTCCCCC-CTGCGTGCT
1 ATGCGCAAGCC-AGGGATC-GACCGGTCCCCCTCTGCGTGCT
2877312 GTCGATCCTA
Statistics
Matches: 276, Mismatches: 59, Indels: 51
0.72 0.15 0.13
Matches are distributed among these distances:
157 5 0.02
158 101 0.37
159 9 0.03
160 15 0.05
161 12 0.04
162 125 0.45
163 9 0.03
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (159 bp):
ATGCGCAAGCCAGGGATCGACCGGTCCCCCTCTGCGTGCTACTTCGGTCCGATCTTAGACTAGGA
ATGAACTTCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCG
TGCGGGCATAAGCAGGTCGGAGAGGCATA
Found at i:2878180 original size:45 final size:45
Alignment explanation
Indices: 2878020--2878177 Score: 165
Period size: 45 Copynumber: 3.5 Consensus size: 45
2878010 GCAAGGGGAC
* * *
2878020 TTGCCTCGACCGCCATCGGCACAAGTTGGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGCGG
* * * * * *
2878065 TTGCCTTGACCACCATCGGTACAAGAT-GGCCCTCGATACAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAG-TGCGGGCGG
* * * *
2878110 TTGCATCGAACACCATCGGCACATGCTGGGCCATAGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGCGG
* *
2878155 TTGCCTCGACTACCATCGACACA
1 TTGCCTCGACCACCATCGGCACA
2878178 TGCCGAGCCC
Statistics
Matches: 90, Mismatches: 21, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
44 7 0.08
45 77 0.86
46 6 0.07
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGCGG
Found at i:2878752 original size:148 final size:147
Alignment explanation
Indices: 2878483--2878752 Score: 346
Period size: 148 Copynumber: 1.8 Consensus size: 147
2878473 CCGATTGGGG
* *
2878483 CTTAGACCAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGCGCGGGCACTCAAC
1 CTTAGACCAGAAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGCGCGAGCACTCAAC
* *
2878548 CGGCCGAAGAGATAGGATGTGCAAGCTGAGGATCAGCCCGATCCCCCTCTGCGTGCTATTACCGA
66 CGGCCGAAGAGATA-GATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTATTACCGA
2878613 TCCCACTGTCGGTCCGAT
130 TCCCACTGTCGGTCCGAT
* * * * * * *
2878631 CTTAGACTAGAAATGAACTTTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGAGCGCTGAAC
1 CTTAGACCAGAAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGCGCGAGCACTCAAC
* * * * *
2878696 TGGCCGGAGAGGCATA-ATGCGCAAGCCGAGGATC-GACCTGATCCTCCTCTGTGTGCT
66 CGGCCGAAGA-G-ATAGATGCGCAAGCCGAGGATCAG-CCCGATCCCCCTCTGCGTGCT
2878753 GTCAGTCCCG
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
147 1 0.01
148 98 0.95
149 1 0.01
150 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (147 bp):
CTTAGACCAGAAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGCGCGAGCACTCAAC
CGGCCGAAGAGATAGATGCGCAAGCCGAGGATCAGCCCGATCCCCCTCTGCGTGCTATTACCGAT
CCCACTGTCGGTCCGAT
Found at i:2878989 original size:26 final size:26
Alignment explanation
Indices: 2878960--2879012 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2878950 CCAGTCTGAT
2878960 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
* *
2878986 CTTATACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
2879012 C
1 C
2879013 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:2879139 original size:196 final size:196
Alignment explanation
Indices: 2878802--2879167 Score: 495
Period size: 196 Copynumber: 1.9 Consensus size: 196
2878792 TAGACATGGA
* * * *
2878802 ATGAACTCCGTTTGCCTAAGCCAACCCTCGAAACAAGCATGCGAGCGCTCAGCCGGTCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGAGCGCTCAGCCGGCCAGACAGG
* * *
2878867 TAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCCCCTGCATGCTGCTGATCCTACTGGTGGACCT
66 CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGCTGATCCCACTGGTGGACCT
** *
2878932 ACTGTTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTATACTAGG
131 ACTACTGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTATACTAGG
2878997 G
196 G
* * * * *
2878998 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-AGGTGCTCAGTCGGCCAGACAG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGA-GCGCTCAGCCGGCCAGACAG
* * *
2879062 GCAGGATGCGCAAGCCGGGGATCGACCCGGTCCCCTCTGCATGCTG-TCGATCCCACT-GTGGGT
65 GCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGCT-GATCCCACTGGT-GGA
* * *
2879125 CCTGCTACTGCAACCCTCAGTCCGGTCTGATCTTCGACTGGGA
128 CCTACTACTGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGA
2879168 GCGCACTACG
Statistics
Matches: 146, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
195 4 0.03
196 142 0.97
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.20
Consensus pattern (196 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCATGCGAGCGCTCAGCCGGCCAGACAGG
CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGCATGCTGCTGATCCCACTGGTGGACCT
ACTACTGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTATACTAGG
G
Found at i:2880914 original size:26 final size:26
Alignment explanation
Indices: 2880885--2880937 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2880875 CCAGTCTGAC
2880885 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2880911 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2880937 C
1 C
2880938 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2887872 original size:45 final size:45
Alignment explanation
Indices: 2887785--2887947 Score: 118
Period size: 45 Copynumber: 3.6 Consensus size: 45
2887775 CTTTGGTACA
* * * *
2887785 GGCACTTGCCTCGACCGCCATCGACACAAGCTGGGCCTTGGTGTG
1 GGCACTTGCCTCAACCACCATCGACACAAGATGGGCCCTGGTGTG
* *
2887830 GGCAGTTGCCTCAACCACCATCGGCACAAGAT-GGCTCCTGGTGTG
1 GGCACTTGCCTCAACCACCATCGACACAAGATGGGC-CCTGGTGTG
** * * * * **
2887875 GGCGA-TTGTATCGAA-CACCATCGACACATGTTAGGCCATGGTACG
1 GGC-ACTTGCCTC-AACCACCATCGACACAAGATGGGCCCTGGTGTG
**
2887920 GGCGA-TTGCCTTGACCACCATCGACACA
1 GGC-ACTTGCCTCAACCACCATCGACACA
2887948 TGCTGGGCTG
Statistics
Matches: 95, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
44 4 0.04
45 85 0.89
46 6 0.06
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (45 bp):
GGCACTTGCCTCAACCACCATCGACACAAGATGGGCCCTGGTGTG
Found at i:2888245 original size:26 final size:26
Alignment explanation
Indices: 2888204--2888256 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
2888194 CTGGTTCGAT
2888204 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2888230 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
2888256 C
1 C
2888257 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2888371 original size:195 final size:195
Alignment explanation
Indices: 2888034--2888425 Score: 420
Period size: 195 Copynumber: 2.0 Consensus size: 195
2888024 TCCGACTAGG
* * *
2888034 GCTTAGACATGGAATGAACTTCGTATGCCTAATCCAACCCATGAAATGAGCGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACACATGAAACGAGCGTGCGGGAGCTCAG
* ** * * * * * *
2888099 TCGGTCGAAGAGGCAGAATGCGTAAGCTGGGATTGGCCTGGTCCCCCCTACGTGCTGCCGATCCT
66 CCGACCGAAGAGGCAGAATGCGTAAGCAGGGATCGACCTGATCCCCCCTACGTGCTACCGATCCC
* * * *
2888164 GCTGCTGGTCTTGCTATC-GCAACCCTCAA-TCTGGT-TCGATCTTAGACTGGGAATGAACTCCG
131 GCTACGGGTCTTGCTACCAG-AACCCTCAATTC-GGTCT-GATCTTAGACTGGGAATGAACTACG
2888226 TAT
193 TAT
* * *
2888229 GCTTAGAC-TGAGGATGAACTCCGTATGCCTAAGT-CAACACATGAAACGAGCGTGCGGGTGCTT
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAA-TCCAACACATGAAACGAGCGTGCGGGAGCTC
* * ** *
2888292 AGCCGACC-AGAGAGGCAGGATGCGTAAGTCAGGGATCGACTTGATCCCTTCTGCGT-CTACCGA
64 AGCCGACCGA-AGAGGCAGAATGCGTAAG-CAGGGATCGACCTGATCCCCCCTACGTGCTACCGA
* * * *
2888355 TCCCGCTACGGGTCTTGCTGCCAGAACCCTCAGTTCGGTCTGATCTTAGACTGGGAGTGCACTAC
127 TCCCGCTACGGGTCTTGCTACCAGAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTAC
2888420 GTAT
192 GTAT
2888424 GC
1 GC
2888426 CTAAGTCAAC
Statistics
Matches: 162, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
194 3 0.02
195 135 0.83
196 24 0.15
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAATCCAACACATGAAACGAGCGTGCGGGAGCTCAG
CCGACCGAAGAGGCAGAATGCGTAAGCAGGGATCGACCTGATCCCCCCTACGTGCTACCGATCCC
GCTACGGGTCTTGCTACCAGAACCCTCAATTCGGTCTGATCTTAGACTGGGAATGAACTACGTAT
Found at i:2889829 original size:26 final size:26
Alignment explanation
Indices: 2889793--2889845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2889783 TCGATTCGAT
* *
2889793 CTTAGACTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2889819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2889845 C
1 C
2889846 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2890025 original size:26 final size:26
Alignment explanation
Indices: 2889989--2890041 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2889979 CTGGTCTGAT
*
2889989 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
2890015 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
2890041 C
1 C
2890042 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:2890410 original size:32 final size:33
Alignment explanation
Indices: 2890356--2890422 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 33
2890346 TGTGATCGTT
2890356 TGAAAAAAATGTCCCCATTTTCAGACACTTTAA
1 TGAAAAAAATGTCCCCATTTTCAGACACTTTAA
2890389 TGAAAAAAATGTCCCCA-TTTCAGACACTTTAA
1 TGAAAAAAATGTCCCCATTTTCAGACACTTTAA
2890421 TG
1 TG
2890423 GCTACTGGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 17 0.50
33 17 0.50
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (33 bp):
TGAAAAAAATGTCCCCATTTTCAGACACTTTAA
Found at i:2890903 original size:34 final size:34
Alignment explanation
Indices: 2890865--2890932 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
2890855 ATGCCGGCCC
* * *
2890865 TTGGTGCGGATGATTACCTCGACCACCATCGGCA
1 TTGGTGCGGACGATTACATCGAACACCATCGGCA
* * *
2890899 TTGGTGTGGGCGGTTACATCGAACACCATCGGCA
1 TTGGTGCGGACGATTACATCGAACACCATCGGCA
2890933 CATGCTGGGC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (34 bp):
TTGGTGCGGACGATTACATCGAACACCATCGGCA
Found at i:2891467 original size:26 final size:26
Alignment explanation
Indices: 2891429--2891481 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2891419 TCGGTCCGAT
* *
2891429 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2891455 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2891481 C
1 C
2891482 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2891963 original size:196 final size:196
Alignment explanation
Indices: 2891627--2891986 Score: 427
Period size: 196 Copynumber: 1.8 Consensus size: 196
2891617 AGACATGGAA
* ** * *
2891627 TGAACTTCGCATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGATCGAAGAGGC
1 TGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGACCGAAGAGGC
* ** * * * *
2891692 AAAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGTGTGCTACCGATCCTGTTGCTAGTCCTA
66 AAAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCGAGTCCAA
*
2891757 CTACCGTAACCCTCGGTCCTGT-TCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGGG
131 CTACCGTAACCCTCGGTCCGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGGG
2891821 GG
195 GG
* * * * * *
2891823 TGAACTCCGTATGCCTAAGTCAACCTACAAAACGAGCATGCGGGCGCTCAGTCGGCC-AGAGAGG
1 TGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGACCGA-AGAGG
* ** * * * *
2891887 CAAGATGCGTAAGCCGAGGATCGACTCGATCCCCTCTGCATGCTGCCGATCCCGCTGCGGGTCCA
65 CAAAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCGAGTCCA
* * *
2891952 ATTATCGTAACCCTTGGTCCGGTCTGATCTTAGAC
130 ACTACCGTAACCCTCGGTCCGGTCTGATCTTAGAC
2891987 GCACTACGTA
Statistics
Matches: 133, Mismatches: 29, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
195 1 0.01
196 131 0.98
197 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (196 bp):
TGAACTCCGCATGCCTAAGCCAACCCACAAAACGAGCATGCGGGCACTCAGCCGACCGAAGAGGC
AAAATGCACAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGCTGCGAGTCCAA
CTACCGTAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAATGGGG
G
Found at i:2892372 original size:90 final size:89
Alignment explanation
Indices: 2892277--2892443 Score: 194
Period size: 90 Copynumber: 1.9 Consensus size: 89
2892267 CAAGCTGGGC
* * * *
2892277 CCTAGTGCAGGCGGTTGCCTCGATCACCATTAG-CACATGCCGGCCCTTGGTGCGA-GCGATTGC
1 CCTAGTACAGGCGGTTGCATCGAACACCA-TAGACACATGCCGGCCCATGGTGCGATG-G-TTGC
2892340 CTCGACCACCATCGATGCAAGATGGCT
63 CTCGACCACCATCGATGCAAGATGGCT
* * * * ** *
2892367 CCTAGTACGGGCTGTTGCATCGAACACCATCGACACATGCTGGGTCATGGTGTGATGGTTGCCTC
1 CCTAGTACAGGCGGTTGCATCGAACACCATAGACACATGCCGGCCCATGGTGCGATGGTTGCCTC
2892432 GACCACCATCGA
66 GACCACCATCGA
2892444 CACATGTCGA
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
89 21 0.33
90 42 0.66
91 1 0.02
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.22
Consensus pattern (89 bp):
CCTAGTACAGGCGGTTGCATCGAACACCATAGACACATGCCGGCCCATGGTGCGATGGTTGCCTC
GACCACCATCGATGCAAGATGGCT
Found at i:2893147 original size:26 final size:26
Alignment explanation
Indices: 2893111--2893163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2893101 CTGGTCCGAT
* *
2893111 CTTAGATTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
2893137 CTTAGACTAGGAATGAACTCGGTATG
1 CTTAGACTAGGAATGAACTCGGTATG
2893163 C
1 C
2893164 CTAATCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCGGTATG
Found at i:2893237 original size:19 final size:19
Alignment explanation
Indices: 2893210--2893252 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
2893200 ATCGACCAGA
* *
2893210 GAGGCAGAATGTGCAAGTC
1 GAGGAAGAATATGCAAGTC
2893229 GAGGAAGAATATGCAAGTC
1 GAGGAAGAATATGCAAGTC
2893248 GAGGA
1 GAGGA
2893253 TTGGCTCGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.37, T:0.14
Consensus pattern (19 bp):
GAGGAAGAATATGCAAGTC
Found at i:2893716 original size:26 final size:26
Alignment explanation
Indices: 2893680--2893732 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2893670 TCAATCTGAT
2893680 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2893706 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2893732 C
1 C
2893733 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2894899 original size:45 final size:45
Alignment explanation
Indices: 2894850--2895042 Score: 183
Period size: 45 Copynumber: 4.3 Consensus size: 45
2894840 TTACCTCAAC
* * * *
2894850 CACCATTGGCACAA-ACTGGGCCCTGGTGTGGGCGGTTGCCTCGAT
1 CACCATCGGCACAAGA-TGGCCCCTGGTGCGGGCGGTTGCCTCGAA
* * * *
2894895 CACCATCAGCACAAGATGGCCCCTGGTGCGAGCGATTGCCTCGAC
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAA
* * *
2894940 CACCATCGGTACAATATGGCCCCTGGTGCGGGCGGTTGCATCGAA
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAA
* * * * * *
2894985 CACCATCGGCACATGCTGGGCCGTGGTACGGGTC-GTTGCCTCGAC
1 CACCATCGGCACAAGATGGCCCCTGGTGCGGG-CGGTTGCCTCGAA
* *
2895030 CATCACCGGCACA
1 CACCATCGGCACA
2895043 TGCCGAGCCC
Statistics
Matches: 121, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
45 119 0.98
46 2 0.02
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
CACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGAA
Found at i:2895024 original size:90 final size:90
Alignment explanation
Indices: 2894843--2895042 Score: 224
Period size: 90 Copynumber: 2.2 Consensus size: 90
2894833 CTGGCACTTA
* * * * * *
2894843 CCTCAACCACCATTGGCACAAACTGGGCCCTGGTGTGGGCGGTTGCCTCGATCACCATCAGCACA
1 CCTCGACCACCATCGGCACAAACTGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAGCACA
*
2894908 AGATGGCCCCTGGTGCGAGCGATTG
66 AGATGGCCCCTGGTACGAGCGATTG
* *
2894933 CCTCGACCACCATCGGTACAATA-TGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCAC
1 CCTCGACCACCATCGGCACAA-ACTGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAGCAC
* * * * *
2894997 ATGCTGGGCCGTGGTACGGGTCG-TTG
65 AAGATGGCCCCTGGTACGAG-CGATTG
* *
2895023 CCTCGACCATCACCGGCACA
1 CCTCGACCACCATCGGCACA
2895043 TGCCGAGCCC
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
90 88 0.97
91 3 0.03
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (90 bp):
CCTCGACCACCATCGGCACAAACTGGCCCCTGGTGCGGGCGGTTGCATCGAACACCATCAGCACA
AGATGGCCCCTGGTACGAGCGATTG
Found at i:2895873 original size:25 final size:26
Alignment explanation
Indices: 2895824--2895875 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
2895814 CCGGTCCGAT
**
2895824 CTTAGACTGGGAATGAACTGTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2895850 CTTAGACTGGG-ATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2895875 C
1 C
2895876 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2896767 original size:13 final size:13
Alignment explanation
Indices: 2896749--2896773 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2896739 CAATGGCACA
2896749 TGATGGCACATGG
1 TGATGGCACATGG
2896762 TGATGGCACATG
1 TGATGGCACATG
2896774 CATCGACCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2897325 original size:158 final size:158
Alignment explanation
Indices: 2897125--2897574 Score: 476
Period size: 159 Copynumber: 2.8 Consensus size: 158
2897115 TGGTTGGTCG
* * * *
2897125 AGATCGGGAATGCACTACGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGCTCAACCGA
1 AGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGA
* * * * *
2897190 CCGAAGAGCCAGAATGCGTAATCCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGATCTCGT
66 CCGGAGAGGCAGAATGCGCAATCCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGATCCCGC
*
2897255 TGCGAGC-CCCTCGATCCGGTTGGGGCTT
131 TGCCA-CACCCTCGATCCGGTTGGGGCTT
* * ** *
2897283 AGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGTACTCAACTG
1 AGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCG
* * * * * * * ** *
2897347 GCCGGAGAGGCATAATGCGCAAGTCAGA-GATTGGCCTGGTCCTCCTCTACGTGCTACCAATCCC
65 ACCGGAGAGGCAGAATGCGCAA-TCCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGATCCC
*
2897411 GCTGCCACAACCCTCGGTCCGGTTGGGGCTT
129 GCTGCCAC-ACCCTCGATCCGGTTGGGGCTT
* * * * **
2897442 AGATATGGAATGAACTCCGTATGCCTAAGCCAAACCGTGAAACGAGCGTGCTAGCGCTCAACCGA
1 AGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGA
* * * * * * *
2897507 CCGGAGAGGTAGAATGTGCAAGCCGGGGATCGACCCGGTCCCCC-CTTGCATGCTGTCGATCCTG
66 CCGGAGAGGCAGAATGCGCAATCCGAGGATCGGCCTGGTCCCCCTC-TGCATGCTGTCGATCCCG
2897571 CTGC
130 CTGC
2897575 TGGTCCTGCT
Statistics
Matches: 233, Mismatches: 52, Indels: 13
0.78 0.17 0.04
Matches are distributed among these distances:
157 1 0.00
158 109 0.47
159 123 0.53
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
AGATAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGA
CCGGAGAGGCAGAATGCGCAATCCGAGGATCGGCCTGGTCCCCCTCTGCATGCTGTCGATCCCGC
TGCCACACCCTCGATCCGGTTGGGGCTT
Found at i:2897661 original size:26 final size:26
Alignment explanation
Indices: 2897610--2897662 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2897600 TCGGTCTGAT
*
2897610 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
2897636 CTTAGATTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2897662 C
1 C
2897663 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2898847 original size:45 final size:45
Alignment explanation
Indices: 2898823--2898925 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 45
2898813 TTGCCTTGAT
2898823 CACCATCAGCACAAGATGGCCCCTGGTGCGGGCGATTGCCTCAAC
1 CACCATCAGCACAAGATGGCCCCTGGTGCGGGCGATTGCCTCAAC
* * * * * *
2898868 CACCATCGGTACAATATGGCCCCTGGTGCAGGCGGTTGCATCGAA-
1 CACCATCAGCACAAGATGGCCCCTGGTGCGGGCGATTGCCTC-AAC
*
2898913 CACCATCGGCACA
1 CACCATCAGCACA
2898926 TGCTGGGCCG
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
45 48 0.96
46 2 0.04
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (45 bp):
CACCATCAGCACAAGATGGCCCCTGGTGCGGGCGATTGCCTCAAC
Found at i:2899800 original size:25 final size:26
Alignment explanation
Indices: 2899750--2899801 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
2899740 CCAGTCTGAT
* *
2899750 CTTAGACTAGGAATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2899776 CTTAGACT-GGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2899801 C
1 C
2899802 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2900691 original size:13 final size:13
Alignment explanation
Indices: 2900673--2900697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2900663 CAATGGCACA
2900673 TGATGGCACATGG
1 TGATGGCACATGG
2900686 TGATGGCACATG
1 TGATGGCACATG
2900698 CATCGACCGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2902482 original size:13 final size:13
Alignment explanation
Indices: 2902464--2902488 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2902454 CAATGGCACA
2902464 TGATGGCACATGG
1 TGATGGCACATGG
2902477 TGATGGCACATG
1 TGATGGCACATG
2902489 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2902581 original size:45 final size:45
Alignment explanation
Indices: 2902532--2902688 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
2902522 TACGGGCACC
** * *
2902532 TGCCTCGACCGTCATCGGCACAAGTTGGGCCCTGGTGCGGGTGGT
1 TGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGT
* * *
2902577 TGCCTTGACCACCATTGGC-CGAAGAT-GGCCTCTGGTGTGGGCGGT
1 TGCCTCGACCACCATCGGCAC-AAGATGGGCC-CTGGTGCGGGCGGT
* * * * * * *
2902622 TGCATCGAACACCATCGGTACATGCTGGACCATGGTGCGGGCGGT
1 TGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGT
*
2902667 TGCCTCGACCTCCATCGGCACA
1 TGCCTCGACCACCATCGGCACA
2902689 TGCCGAGCCT
Statistics
Matches: 87, Mismatches: 21, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
44 5 0.06
45 78 0.90
46 4 0.05
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (45 bp):
TGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGT
Found at i:2903527 original size:26 final size:26
Alignment explanation
Indices: 2903498--2903576 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2903488 CCGATCCGAT
* *
2903498 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
2903524 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
2903550 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
2903576 C
1 C
2903577 CTGAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:2903746 original size:222 final size:222
Alignment explanation
Indices: 2903340--2903746 Score: 550
Period size: 222 Copynumber: 1.8 Consensus size: 222
2903330 TAAACATGGA
* * *
2903340 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGCGCTCAGTCGGTCAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCGGCCAGAGAGG
** * *
2903405 CAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCATGTTACCGATCCTGTTGCTAGTCCT
66 CAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGTTGCTAGTCCT
* * * *
2903470 GCTGTAACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGG
131 GCTATAACAACCCTCGGTCCAATCCGATCTTAGACTAGGAACGAACTACGTATGCTTAGACTGGG
2903535 GATGAACTCCGTATGCTTAGACTGGGG
196 GATGAACTCCGTATGCTTAGACTGGGG
* *
2903562 ATGAACTCCGTATGCCTGAGTCAACCCATGAAACGAGCATGC-AGGCGCTCAGCCGGCCAGAGAG
1 ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGA-GCGCTCAGCCGGCCAGAGAG
* * * ** *
2903626 GCA-AGATGCACAAGTCGGGGATCGACCCGATCCCCTCTGCGTGCTGTCGATCCCGTTG-TGGGT
65 GCAGA-ATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGTTGCT-AGT
* ** * *
2903689 CTTGCTATCGCAACCCTCGGTCCAATCCGATCTTAGACTAGGAGCGCACTACGTATGC
128 CCTGCTATAACAACCCTCGGTCCAATCCGATCTTAGACTAGGAACGAACTACGTATGC
2903747 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
221 3 0.02
222 155 0.98
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (222 bp):
ATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCGGCCAGAGAGG
CAGAATGCACAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTACCGATCCCGTTGCTAGTCCT
GCTATAACAACCCTCGGTCCAATCCGATCTTAGACTAGGAACGAACTACGTATGCTTAGACTGGG
GATGAACTCCGTATGCTTAGACTGGGG
Found at i:2904592 original size:90 final size:90
Alignment explanation
Indices: 2904509--2904710 Score: 253
Period size: 90 Copynumber: 2.3 Consensus size: 90
2904499 CCTTTGGTAT
* * * * * *
2904509 GGGCGCTTGCCTCGACCGCCATCGACACAAGCTGG-CCGTGGTGCGGGCGATTGCCTCGATCACC
1 GGGCGATTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGATTACCTCGAACACC
2904573 ATCGGCACATGCCGGCCCTTGGTGC
66 ATCGGCACATGCCGGCCCTTGGTGC
* * * * * *
2904598 GAGCGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTGGGCGGTTACTTTGAACACC
1 GGGCGATTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGATTACCTCGAACACC
* * *
2904663 ATCGGCACATGCTGGGCCATGGTGC
66 ATCGGCACATGCCGGCCCTTGGTGC
*
2904688 GGGCGGTTGCCTCGACCACCATC
1 GGGCGATTGCCTCGACCACCATC
2904711 AGCATATGCT
Statistics
Matches: 95, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
89 30 0.32
90 65 0.68
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.19
Consensus pattern (90 bp):
GGGCGATTGCCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGGCGATTACCTCGAACACC
ATCGGCACATGCCGGCCCTTGGTGC
Found at i:2904607 original size:45 final size:45
Alignment explanation
Indices: 2904509--2904729 Score: 221
Period size: 45 Copynumber: 5.0 Consensus size: 45
2904499 CCTTTGGTAT
* * * * *
2904509 GGGCGCTTGCCTCGACCGCCATCGACACAAGCTGG-CCGTGGTGC
1 GGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGC
* * *
2904553 GGGCGATTGCCTCGATCACCATCGGCACATGCCGGCCCTTGGTGC
1 GGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGC
* * * * *
2904598 GAGCGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGT
1 GGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGC
* * * * * *
2904643 GGGCGGTTACTTTGAACACCATCGGCACATGCTGGGCCATGGTGC
1 GGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGC
* * * *
2904688 GGGCGGTTGCCTCGACCACCATCAGCATATGCTAGCCC-TGGT
1 GGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCATGGT
2904730 CACCCACTGA
Statistics
Matches: 143, Mismatches: 33, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
44 33 0.23
45 110 0.77
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.19
Consensus pattern (45 bp):
GGGCGATTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGC
Found at i:2905529 original size:26 final size:26
Alignment explanation
Indices: 2905488--2905540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2905478 CTGGTCTGAT
2905488 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
2905514 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
2905540 C
1 C
2905541 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:2907080 original size:12 final size:12
Alignment explanation
Indices: 2907063--2907105 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
2907053 CCCCCCTGCA
*
2907063 TGCTATCGATCC
1 TGCTATCGGTCC
*
2907075 TGCTATTGGTCC
1 TGCTATCGGTCC
2907087 TGCTATCGGTCC
1 TGCTATCGGTCC
2907099 TGCTATC
1 TGCTATC
2907106 ATAACCCTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.12, C:0.30, G:0.21, T:0.37
Consensus pattern (12 bp):
TGCTATCGGTCC
Found at i:2907178 original size:26 final size:26
Alignment explanation
Indices: 2907128--2907180 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2907118 CCAGTCTGAT
*
2907128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
2907154 CTTAGACTGGGGATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
2907180 C
1 C
2907181 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:2908171 original size:45 final size:45
Alignment explanation
Indices: 2908122--2908294 Score: 186
Period size: 45 Copynumber: 3.8 Consensus size: 45
2908112 GTATAGGCAC
*
2908122 TTGCCTCGATCGCCATCGGCACAAGCTGAG-CCCTGGTGCGGGTGG
1 TTGCCTCGATCACCATCGGCACAAGCTG-GCCCCTGGTGCGGGTGG
* * * *
2908167 TTGCCTCGATCACCATCGGCACATGCTGGTCCTTGGTGCGGGTGA
1 TTGCCTCGATCACCATCGGCACAAGCTGGCCCCTGGTGCGGGTGG
* * * *
2908212 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCGGGCGG
1 TTGCCTCGATCACCATCGGCACAAGCTGGCCCCTGGTGCGGGTGG
** * * * * *
2908257 TTGTATCGAACACCATTGGCACATGCTGGGCCGTGGTG
1 TTGCCTCGATCACCATCGGCACAAGCTGGCCCCTGGTG
2908295 TGGGCAATTG
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 1 0.01
45 105 0.99
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.22
Consensus pattern (45 bp):
TTGCCTCGATCACCATCGGCACAAGCTGGCCCCTGGTGCGGGTGG
Found at i:2908294 original size:90 final size:90
Alignment explanation
Indices: 2908117--2908323 Score: 247
Period size: 90 Copynumber: 2.3 Consensus size: 90
2908107 TTTTGGTATA
* * * * * * * *
2908117 GGCACTTGCCTCGATCGCCATCGGCACAAGCTGAGCCCTGGTGCGGGTGGTTGCCTCGATCACCA
1 GGCAATTGCCTCGACCACCATCGGCACAAGATGAGCCCTAGTGCGGGCGGTTGCATCGAACACCA
* *
2908182 TCGGCACATGCTGGTCCTTGGTGCG
66 TCGGCACATGCTGGGCCGTGGTGCG
** *
2908207 GGTGATTGCCTCGACCACCATCGGCACAAGATG-GCCCCTAGTGCGGGCGGTTGTATCGAACACC
1 GGCAATTGCCTCGACCACCATCGGCACAAGATGAG-CCCTAGTGCGGGCGGTTGCATCGAACACC
* *
2908271 ATTGGCACATGCTGGGCCGTGGTGTG
65 ATCGGCACATGCTGGGCCGTGGTGCG
*
2908297 GGCAATTGCCT-GACCACCATCAGCACA
1 GGCAATTGCCTCGACCACCATCGGCACA
2908324 TGTCGAGCCC
Statistics
Matches: 98, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
89 16 0.16
90 82 0.84
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (90 bp):
GGCAATTGCCTCGACCACCATCGGCACAAGATGAGCCCTAGTGCGGGCGGTTGCATCGAACACCA
TCGGCACATGCTGGGCCGTGGTGCG
Found at i:2908993 original size:26 final size:26
Alignment explanation
Indices: 2908957--2909009 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2908947 CTGGTCTGAT
2908957 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
2908983 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
2909009 C
1 C
2909010 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:2910025 original size:44 final size:45
Alignment explanation
Indices: 2909953--2910063 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 45
2909943 GTACTGGCAC
* * * *
2909953 TTGCCTCGACCACCATCGGCATAAGCTGGGCCCTAGTG-TGGTGG
1 TTGCCTCGACCACCATTGGCACAAGCTGGGCCCGAGTGCAGGTGG
* * * * *
2909997 TTGCATCGAACACCATTGGCACATGCTGGGCCGGGGTGCAGGTGG
1 TTGCCTCGACCACCATTGGCACAAGCTGGGCCCGAGTGCAGGTGG
2910042 TTGCCTCGACCACCATTGGCAC
1 TTGCCTCGACCACCATTGGCAC
2910064 TTGTCGAGCC
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
44 30 0.55
45 25 0.45
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATTGGCACAAGCTGGGCCCGAGTGCAGGTGG
Found at i:2912493 original size:26 final size:26
Alignment explanation
Indices: 2912464--2912516 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2912454 CCGGTCTGAT
*
2912464 CTTAGACT-GAGAATGAACTCTGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
2912490 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2912516 C
1 C
2912517 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2913904 original size:13 final size:13
Alignment explanation
Indices: 2913886--2913911 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2913876 TCAATGGCAC
2913886 GTGATGGCGCATG
1 GTGATGGCGCATG
2913899 GTGATGGCGCATG
1 GTGATGGCGCATG
2913912 CATCGACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.46, T:0.23
Consensus pattern (13 bp):
GTGATGGCGCATG
Found at i:2914015 original size:45 final size:45
Alignment explanation
Indices: 2913966--2914111 Score: 132
Period size: 45 Copynumber: 3.2 Consensus size: 45
2913956 GCCTCAGCCG
* * *
2913966 CCATCGGCACAAGCTGGGCCCTGGTGTGGGTGGTTGCCTCGATCA
1 CCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
* * ** * * * *
2914011 CCATCGGTACATGC-CAGCCCTTGGTGCGAGCGATTACTTCGACCA
1 CCATCGGCACAAGCTGGGCCC-TGGTGCGGGCGGTTGCCTCGACCA
* * * *
2914056 CCATCGGCACAAGATGGCCCCTGGTGCAGGCGGTTGCCTCGGCCA
1 CCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
*
2914101 CCATCGACACA
1 CCATCGGCACA
2914112 TGCCAAGCCC
Statistics
Matches: 75, Mismatches: 24, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
44 4 0.05
45 68 0.91
46 3 0.04
ACGTcount: A:0.18, C:0.34, G:0.29, T:0.19
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
Found at i:2914593 original size:26 final size:26
Alignment explanation
Indices: 2914553--2914605 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2914543 CCAGTTCGAT
2914553 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
*
2914579 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
2914605 C
1 C
2914606 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:2915878 original size:26 final size:26
Alignment explanation
Indices: 2915849--2915901 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2915839 CCGGTCTAAT
2915849 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * * *
2915875 CTTAGACTGGGGATGACCTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2915901 C
1 C
2915902 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2916162 original size:159 final size:158
Alignment explanation
Indices: 2915873--2916163 Score: 343
Period size: 159 Copynumber: 1.8 Consensus size: 158
2915863 GAACTCCGTA
* * * * *
2915873 TGCTTAGACTGGGGATGACCTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCA
1 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * * * * * *
2915938 GCCAACCAAAGAGGTAGGATGCGTAAGCCGAGGATCGGCTCGATCCCCCTTTGTGTGCTATCGAT
66 ACCAACCAAAGAGGTAGAATGAGCAAGCCGAGGATCGGCCCAATCCCCC-TTGCGTGCTACCGAT
2916003 CTCGCTGCCATAACCCTCGGTCTGACTGG
130 CTCGCTGCCATAACCCTCGGTCTGACTGG
* **
2916032 TGCTTAGACAT-GGAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTC
1 TGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTC
* ** * *
2916096 AACCATCCGCAGATGTAGAATGAGCAAGCCGGGGATCGGCCCAATTCCCTCC-TGCGTGCTACCG
65 AACCAACCAAAGAGGTAGAATGAGCAAGCCGAGGATCGGCCCAA-TCCC-CCTTGCGTGCTACCG
2916160 ATCT
128 ATCT
2916164 TACTGCTGGT
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
159 101 0.94
160 5 0.05
161 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
ACCAACCAAAGAGGTAGAATGAGCAAGCCGAGGATCGGCCCAATCCCCCTTGCGTGCTACCGATC
TCGCTGCCATAACCCTCGGTCTGACTGG
Found at i:2917002 original size:18 final size:18
Alignment explanation
Indices: 2916979--2917021 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
2916969 GCCCCCCCAA
2916979 TCGTCGGAAACCCAAATG
1 TCGTCGGAAACCCAAATG
**
2916997 TCGTCGGTTACCCAAATG
1 TCGTCGGAAACCCAAATG
2917015 TCGTCGG
1 TCGTCGG
2917022 TTAGGTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (18 bp):
TCGTCGGAAACCCAAATG
Found at i:2917022 original size:18 final size:18
Alignment explanation
Indices: 2916988--2917024 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
2916978 ATCGTCGGAA
2916988 ACCCAAATGTCGTCGGTT
1 ACCCAAATGTCGTCGGTT
2917006 ACCCAAATGTCGTCGGTT
1 ACCCAAATGTCGTCGGTT
2917024 A
1 A
2917025 GGTTCTCCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (18 bp):
ACCCAAATGTCGTCGGTT
Found at i:2917163 original size:13 final size:13
Alignment explanation
Indices: 2917145--2917169 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2917135 CAATGGCACA
2917145 TGATGGCACATGG
1 TGATGGCACATGG
2917158 TGATGGCACATG
1 TGATGGCACATG
2917170 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2918317 original size:45 final size:45
Alignment explanation
Indices: 2918261--2918368 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
2918251 GGCACTTACC
* * **
2918261 TCGACCGCCATTGGCACAAGCTGGGCCCTGGTACGGGTGGTTGTCA
1 TCGACCACCATTGGCACAAGATGACCCCTGGTACGGGTGGTTG-CA
**
2918307 T-GACCACCATTGGCACAAGATGACCCCTGGTGTGGGTGGTTGCA
1 TCGACCACCATTGGCACAAGATGACCCCTGGTACGGGTGGTTGCA
* *
2918351 TCGAACACCATCGGCACA
1 TCGACCACCATTGGCACA
2918369 TGTCGAGCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.06
45 49 0.92
46 1 0.02
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (45 bp):
TCGACCACCATTGGCACAAGATGACCCCTGGTACGGGTGGTTGCA
Found at i:2918721 original size:45 final size:45
Alignment explanation
Indices: 2918671--2918871 Score: 203
Period size: 45 Copynumber: 4.5 Consensus size: 45
2918661 GTATGGGAAC
* * *
2918671 TTGCCTCGATCACCATCGACACAAGCTGGGCCCTGGTGTGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
* *
2918716 TTGCCTCGATCACCATCGGTACATA-CT-GGCCCTTGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACA-AGCTGGGCCC-TGGTGCGGGCGA
* * * *
2918761 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
* * * * * * *
2918806 TTACATCGAACACCAT-GGCACATGCTGAG-CCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
*
2918849 TTGCCTCGACCATCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
2918872 TGTCAAGCCT
Statistics
Matches: 129, Mismatches: 22, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
43 24 0.19
44 21 0.16
45 79 0.61
46 5 0.04
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
Found at i:2918868 original size:88 final size:90
Alignment explanation
Indices: 2918671--2918871 Score: 237
Period size: 90 Copynumber: 2.3 Consensus size: 90
2918661 GTATGGGAAC
* * * * * * * * * *
2918671 TTGCCTCGATCACCATCGACACAAGCTGGGCCCTGGTGTGGGCGATTGCCTCGATCACCATCGGT
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATGCGGGCGATTACATCGAACACCATCGGC
*
2918736 ACATACTGGCCCTTGGTGCGGGCGA
66 ACATACTGGCCCTTGGTGCAGGCGA
*
2918761 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATGCGGGCGGTTACATCGAACACCAT-GGC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATGCGGGCGATTACATCGAACACCATCGGC
* *
2918825 ACATGCTGAG-CC-TGGTGCAGGCGG
66 ACATACTG-GCCCTTGGTGCAGGCGA
*
2918849 TTGCCTCGACCATCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
2918872 TGTCAAGCCT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
88 32 0.34
89 11 0.12
90 52 0.55
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGATGCGGGCGATTACATCGAACACCATCGGC
ACATACTGGCCCTTGGTGCAGGCGA
Found at i:2919422 original size:135 final size:135
Alignment explanation
Indices: 2919176--2919426 Score: 306
Period size: 135 Copynumber: 1.9 Consensus size: 135
2919166 CCAATTGGGG
* * *
2919176 CTTAGACCGAGAATAAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGT
1 CTTAGACCGAGAATAAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCATACGGGCGCTCAGT
* ** * *
2919241 CAGCTAGAGAGGCAGGATGTGCAAGCCGAAGATCGATCTGTCCCCCTCTGTATGCTACTGCCGAT
66 CAGCCAGAGAGGCAAAATGTGCAAGCCGAAGATCGACCCGTCCCCCTCTGTATGCTACTGCCGAT
2919306 CTGAT
131 CTGAT
* * * * *
2919311 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCGCTGAG-
1 CTTAGACCGAGAATAAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCATACGGGCGCTCAGT
* * * ** *
2919375 CTGGCCGGAGAGGCAAAATGTGCAAGCTGGGGATCGACCCGATCCCCTTCTG
66 C-AGCCAGAGAGGCAAAATGTGCAAGCCGAAGATCGACCCG-TCCCCCTCTG
2919427 CGTGCTATCG
Statistics
Matches: 95, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
134 1 0.01
135 85 0.89
136 9 0.09
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (135 bp):
CTTAGACCGAGAATAAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCATACGGGCGCTCAGT
CAGCCAGAGAGGCAAAATGTGCAAGCCGAAGATCGACCCGTCCCCCTCTGTATGCTACTGCCGAT
CTGAT
Found at i:2919605 original size:159 final size:159
Alignment explanation
Indices: 2919311--2919605 Score: 346
Period size: 159 Copynumber: 1.9 Consensus size: 159
2919301 CCGATCTGAT
* * *
2919311 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCGCTCAAC
* * ** * * * *
2919376 TGGCCGGAGAGGCAAAATGTGCAAGCTGGGGATCGACCCGATCCCCTTCTGCGTGCTATCGATCC
66 CGACCGGAGAGGCAAAATACGCAAGCCGGAGATCGACCCGATCCCCCTCTACGTGCTATCGATCC
2919441 CGCTGCCACAACCTTTGGTTTGGCTGGGG
131 CGCTGCCACAACCTTTGGTTTGGCTGGGG
* *
2919470 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CTAACCCAC-AAA-AAGAACGTGCGGGTGCT
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAATAAG--CATGCGGGCGCT
* * ** * *
2919531 CAACCGACCGGAGAGGCAGAATACGCAAGCCGGAGATTGGTCGGATCCCCCTCTACGTGCTGTCG
62 CAACCGACCGGAGAGGCAAAATACGCAAGCCGGAGATCGACCCGATCCCCCTCTACGTGCTATCG
*
2919596 ATCCTGCTGC
127 ATCCCGCTGC
2919606 TGGTCCTGCT
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.03
158 4 0.04
159 104 0.93
160 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGCATGCGGGCGCTCAAC
CGACCGGAGAGGCAAAATACGCAAGCCGGAGATCGACCCGATCCCCCTCTACGTGCTATCGATCC
CGCTGCCACAACCTTTGGTTTGGCTGGGG
Found at i:2919669 original size:26 final size:25
Alignment explanation
Indices: 2919640--2919691 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
2919630 CTGATCCCAT
*
2919640 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGG-ATGAACTCCATATG
*
2919666 CTTAGATTAGGATGAACTCCATATG
1 CTTAGACTAGGATGAACTCCATATG
2919691 C
1 C
2919692 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (25 bp):
CTTAGACTAGGATGAACTCCATATG
Found at i:2921166 original size:26 final size:26
Alignment explanation
Indices: 2921137--2921189 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2921127 CTAGTCTGAT
*
2921137 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2921163 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2921189 C
1 C
2921190 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2921305 original size:196 final size:196
Alignment explanation
Indices: 2920966--2921344 Score: 489
Period size: 196 Copynumber: 1.9 Consensus size: 196
2920956 CCCGGCTGGG
2920966 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGTGGGGGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGTGGGGGCTCAG
* * * * * *
2921031 TCGGCCAGAGAGGCGGAATGTGCAAGCCGGGGATCGTCTCGATCCCCCCTGCATGCTATCGATCC
66 CCGGCCAGAGAGGCGGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATGCATGCTATCAATCC
* * * *
2921096 TGCTACTGGTCCTACTG-TCGTAACCCTCAGTCT-AGTCTGATCTTAGACTGGGAATGAACTCTG
131 TACTACTGGTCCTAATGCT-GCAACCCTCAATCTGA-TCTGATCTTAGACTGGGAATGAACTCTG
2921159 TAT
194 TAT
* ** * *
2921162 GCTTAGAC-TGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGTGGGGGCTCA
* * * *
2921226 GCCGGCCAGAGAGGCAGG-ATGCGTAAGCCGGGGATCGACCCGGTCCCCTATGCATGCTGTCAAT
65 GCCGGCCAGAGAGGC-GGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATGCATGCTATCAAT
* *
2921290 CCTACT-GTGGGTCCTAATGCTGCAACCCTCAATCTGATCTGATCTTATACTGGGA
129 CCTACTACT-GGTCCTAATGCTGCAACCCTCAATCTGATCTGATCTTAGACTGGGA
2921345 GTGCACTACG
Statistics
Matches: 157, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
195 2 0.01
196 151 0.96
197 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.22
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCACAAAACGAGCGTGTGGGGGCTCAG
CCGGCCAGAGAGGCGGAATGCGCAAGCCGGGGATCGACCCGATCCCCCATGCATGCTATCAATCC
TACTACTGGTCCTAATGCTGCAACCCTCAATCTGATCTGATCTTAGACTGGGAATGAACTCTGTA
T
Found at i:2922793 original size:136 final size:136
Alignment explanation
Indices: 2922549--2922800 Score: 351
Period size: 136 Copynumber: 1.9 Consensus size: 136
2922539 CCGGTTGAGG
* ** *
2922549 CTTAGACCGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGCACGGGCGCTTAGC
1 CTTAGACCGAGAATGAACTCCGTATGCCTAAGTCAACACACAAAACGAGTGCACGGGCGCTGAGC
* **
2922614 CGACCGGAGAGGCAGGATGTGTAAGTCGAGGATCGGCCTGATCCCCCTCTGGGTGCTGCTACCAG
66 CGACCGGAGAGGCAGAATACGTAAGTCGAGGATCGGCCTGATCCCCCTCTGGGTGCTGCTACCAG
2922679 TCCGAT
131 TCCGAT
* * * * *
2922685 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACAAAATGAGTGTACGGGTGCTGAGC
1 CTTAGACCGAGAATGAACTCCGTATGCCTAAGTCAACACACAAAACGAGTGCACGGGCGCTGAGC
* * * * *
2922750 CGACTGGAGTGGCATAATACGTAAGTTGGGGATCGGCCTGATCCCCCTCTG
66 CGACCGGAGAGGCAGAATACGTAAGTCGAGGATCGGCCTGATCCCCCTCTG
2922801 CATGCTATCG
Statistics
Matches: 99, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
136 99 1.00
ACGTcount: A:0.25, C:0.26, G:0.29, T:0.21
Consensus pattern (136 bp):
CTTAGACCGAGAATGAACTCCGTATGCCTAAGTCAACACACAAAACGAGTGCACGGGCGCTGAGC
CGACCGGAGAGGCAGAATACGTAAGTCGAGGATCGGCCTGATCCCCCTCTGGGTGCTGCTACCAG
TCCGAT
Found at i:2923185 original size:170 final size:169
Alignment explanation
Indices: 2922844--2923266 Score: 437
Period size: 170 Copynumber: 2.5 Consensus size: 169
2922834 CCAGCTGGGG
* * * *
2922844 CTTAGAC-GTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCTGC--GCTGCTCAG
1 CTTAGACTG-GGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGATGCGGGC-GCTCAG
** * * * *
2922906 TCGGTCGGAGAGGCAGAATGCGTAAGCCAAGGATCGGCCTGGTCCCTCCTGCGTGCTGTCGATCC
64 TCGACCGGAGAGGCAGGATGCGCAAGCCAAGGATCGGCCAGATCCCTCCTGCGTGCTGTCGATCC
* * *
2922971 TATTGCTAGTCCTACTACCGTAACCCTCGGTTTCATCTGAT
129 TATTGCTAGTCCTACTACCGCAACCCTCAGTTTCATCCGAT
* * *
2923012 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAG-ATGCGGGCGCTCAGT
* *** * *
2923077 CGACCAGAGAGGCAGGATGCGCAAGCTGGGGATCGGCCAGATCCC-CTCTGTGTGCTGTCGATCT
65 CGACCGGAGAGGCAGGATGCGCAAGCCAAGGATCGGCCAGATCCCTC-CTGCGTGCTGTCGATCC
* * *
2923141 TGTTG-TGGGTCCT-GTAGCCGCAACCCTCAG-TTCAATCCGAT
129 TATTGCT-AGTCCTACTA-CCGCAACCCTCAGTTTC-ATCCGAT
** * * * *
2923182 CTTAGACTGGGAGCGCACTACGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTTAGT
1 CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAG-ATGCGGGCGCTCAGT
*
2923247 CGACCGGAGAGGCGGGATGC
65 CGACCGGAGAGGCAGGATGC
2923267 ACAAACCGTA
Statistics
Matches: 212, Mismatches: 35, Indels: 14
0.81 0.13 0.05
Matches are distributed among these distances:
168 44 0.21
169 11 0.05
170 155 0.73
171 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (169 bp):
CTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACGAAACGAGATGCGGGCGCTCAGTC
GACCGGAGAGGCAGGATGCGCAAGCCAAGGATCGGCCAGATCCCTCCTGCGTGCTGTCGATCCTA
TTGCTAGTCCTACTACCGCAACCCTCAGTTTCATCCGAT
Found at i:2924005 original size:90 final size:90
Alignment explanation
Indices: 2923836--2924009 Score: 204
Period size: 90 Copynumber: 1.9 Consensus size: 90
2923826 CGACTGCCCT
* ** * * * * *
2923836 TTGGTACAGGCACTTACCTCGACCACCATCGGCGTAAGCTGGGCCCTGGTGCGGGCATTTACCTC
1 TTGGTACAGGCAATTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCAGTTACATC
* *
2923901 GATCACCATCGGCACATGCCGACCG
66 GAACAACATCGGCACATGCCGACCG
* * * * *
2923926 TTGGTACGGGCAATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGTTGCAGGCGGTTGCATC
1 TTGGTACAGGCAATTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCAGTTACATC
*
2923991 GAACAACATTGGCACATGC
66 GAACAACATCGGCACATGC
2924010 TAGGTTGTGG
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
90 68 1.00
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (90 bp):
TTGGTACAGGCAATTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCAGTTACATC
GAACAACATCGGCACATGCCGACCG
Found at i:2924532 original size:26 final size:26
Alignment explanation
Indices: 2924494--2924546 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2924484 TCGGTCTGAT
* *
2924494 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
2924520 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
2924546 C
1 C
2924547 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2924704 original size:69 final size:69
Alignment explanation
Indices: 2924618--2924758 Score: 228
Period size: 69 Copynumber: 2.0 Consensus size: 69
2924608 AGTCGGGGAC
* * * *
2924618 TGGCCCGATCCCCCTCTGCGTGCTGTAGGTCCCGCTGCCACAACCTTCGATCTGGCTGGGGCTTA
1 TGGCCCGATCCCCCTCTGCGTGCTGCAGGTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTA
*
2924683 GACA
66 CACA
*
2924687 TGGCCCGATCCCCCTCTGCGTGCTGCAGGTCCCGCTACCACAACCCTCGATCCGGTTGGGGCTTA
1 TGGCCCGATCCCCCTCTGCGTGCTGCAGGTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTA
2924752 CACA
66 CACA
2924756 TGG
1 TGG
2924759 AATGAACTCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.13, C:0.38, G:0.27, T:0.22
Consensus pattern (69 bp):
TGGCCCGATCCCCCTCTGCGTGCTGCAGGTCCCGCTACCACAACCCTCGATCCGGCTGGGGCTTA
CACA
Found at i:2925359 original size:89 final size:90
Alignment explanation
Indices: 2925235--2925434 Score: 224
Period size: 89 Copynumber: 2.2 Consensus size: 90
2925225 TGATGGCACA
* * * * * * * * *
2925235 TGCATCGACCATCATCGACACAG-GCTGCCCTTTGGTACGGGCACTTACCTTGATCGCCATCGGC
1 TGCATCGAACACCATCGACAC-GTGCCGGCCATTGGTACGGGCAATTACCTTAACCACCATCGGC
* * * *
2925299 ACAAGCTGGGCCTTGGTGC-GGCGGT
65 ACAAGATGGCCCCTGGTACGGGCGGT
* * * *
2925324 TGCCTCGATCACCATCGACACGTGCCGGCCATTGGTGCGGGCAATTGCCTTAACCACCATCGGCA
1 TGCATCGAACACCATCGACACGTGCCGGCCATTGGTACGGGCAATTACCTTAACCACCATCGGCA
2925389 CAAGATGGCCCCTGGTACGGGCGGT
66 CAAGATGGCCCCTGGTACGGGCGGT
2925414 TGCATCGAACACCATCGACAC
1 TGCATCGAACACCATCGACAC
2925435 ATGCTGGGCG
Statistics
Matches: 91, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
88 1 0.01
89 65 0.71
90 25 0.27
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (90 bp):
TGCATCGAACACCATCGACACGTGCCGGCCATTGGTACGGGCAATTACCTTAACCACCATCGGCA
CAAGATGGCCCCTGGTACGGGCGGT
Found at i:2925455 original size:45 final size:45
Alignment explanation
Indices: 2925247--2925466 Score: 158
Period size: 45 Copynumber: 4.9 Consensus size: 45
2925237 CATCGACCAT
* * ** * * * *
2925247 CATCGACACAGGCT-GCCCTTTGGTACGGGCACTTACCTTGATCGC
1 CATCGACACAAGCTGGCCC-TTGGTGCGGGCGGTTGCCTCGAACAC
* * *
2925292 CATCGGCACAAGCTGGGCCTTGGTGC-GGCGGTTGCCTCGATCAC
1 CATCGACACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTCGAACAC
** * * ** *
2925336 CATCGACACGTGCCGGCCATTGGTGCGGGCAATTGCCT-TAACCAC
1 CATCGACACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTCGAA-CAC
* * * * *
2925381 CATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACAC
1 CATCGACACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTCGAACAC
* * **
2925426 CATCGACACATGCTGGGCGGTGGTGCGGGCGGTTGCCTCGA
1 CATCGACACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTCGA
2925467 CCATCGTTGG
Statistics
Matches: 132, Mismatches: 39, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
44 34 0.26
45 93 0.70
46 5 0.04
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
CATCGACACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTCGAACAC
Found at i:2925463 original size:90 final size:89
Alignment explanation
Indices: 2925291--2925455 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 89
2925281 ACCTTGATCG
* * * * * * * *
2925291 CCATCGGCACAAGCTGGGCCTTGGTGCGGCGGTTGCCTCGATCACCATCGACACGTGCCGGCCAT
1 CCATCGGCACAAGATGGCCCCTGGTACGGCGGTTGCATCGAACACCATCGACACATGCCGGCCAG
2925356 TGGTGCGGGCAATTGCCTTAACCA
66 TGGTGCGGGCAATTGCCTTAACCA
* * *
2925380 CCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACACCATCGACACATGCTGGGCG
1 CCATCGGCACAAGATGGCCCCTGGTAC-GGCGGTTGCATCGAACACCATCGACACATGCCGGCCA
2925445 GTGGTGCGGGC
65 GTGGTGCGGGC
2925456 GGTTGCCTCG
Statistics
Matches: 64, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
89 23 0.36
90 41 0.64
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.18
Consensus pattern (89 bp):
CCATCGGCACAAGATGGCCCCTGGTACGGCGGTTGCATCGAACACCATCGACACATGCCGGCCAG
TGGTGCGGGCAATTGCCTTAACCA
Found at i:2927458 original size:45 final size:45
Alignment explanation
Indices: 2927409--2927498 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
2927399 CCTTTCGTAG
* * *
2927409 GGGCACTTGCCTCGATCGCCATCGGCACAAGCTGGGCC-CTGGTGC
1 GGGCACTTGCCTCGACCGCCATCAGCACAAGAT-GGCCACTGGTGC
* *
2927454 GGGCAGTTGCCTCGACCTCCATCAGCACAAGATGGCCACTGGTGC
1 GGGCACTTGCCTCGACCGCCATCAGCACAAGATGGCCACTGGTGC
2927499 CTGCGGTTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
44 4 0.10
45 35 0.90
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.18
Consensus pattern (45 bp):
GGGCACTTGCCTCGACCGCCATCAGCACAAGATGGCCACTGGTGC
Found at i:2927508 original size:45 final size:45
Alignment explanation
Indices: 2927410--2927508 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 45
2927400 CTTTCGTAGG
* * * * *
2927410 GGCACTTGCCTCGATCGCCATCGGCACAAGCTGGGCCCTGGTGCG
1 GGCAGTTGCCTCGACCGCCATCAGCACAAGATGGGCCCTGGTGCC
*
2927455 GGCAGTTGCCTCGACCTCCATCAGCACAAGAT-GGCCACTGGTGCC
1 GGCAGTTGCCTCGACCGCCATCAGCACAAGATGGGCC-CTGGTGCC
* *
2927500 TGCGGTTGC
1 GGCAGTTGC
2927509 ATCAAACACC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
44 4 0.09
45 41 0.91
ACGTcount: A:0.15, C:0.34, G:0.31, T:0.19
Consensus pattern (45 bp):
GGCAGTTGCCTCGACCGCCATCAGCACAAGATGGGCCCTGGTGCC
Found at i:2927929 original size:158 final size:159
Alignment explanation
Indices: 2927740--2928798 Score: 625
Period size: 159 Copynumber: 6.6 Consensus size: 159
2927730 GAATGCGCTA
** * ** * *
2927740 CGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGCGCTCATTCGGCCGAAGAGCCAGAATGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGCCAGAATGC
* ** * *
2927805 GCAAGCCAAGGATCGGCCCCTTCCCCCTCTGCGTGCTGCCGATCCCACTA-TGGGTCCCTCTATC
66 GCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCGGGTCCCTCGATC
2927869 CGATTGGGGCTTAGATC-GGGAATGAACTC
131 CGATTGGGGCTTAGA-CAGGGAATGAACTC
* ** * ** *
2927898 TGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGCTCAACCAGTC-AGAGAGGTAGGATG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGA-AGAGCCAGAATG
** * * * **
2927962 CATAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCTGCTGTTAGTCCGATCATAGATTGGG--
65 CGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCG--A-TCCCA-C-T--ACCGGGTC
** * * *
2928025 AAT-GAGCTCTATAT---GCTTAGACTGGGAATGAACTC
123 CCTCGATC-CGAT-TGGGGCTTAGACAGGGAATGAACTC
* * ** * * * * *
2928060 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCAGAGCCAGTCGGAGAGGCATAACGT
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGCCAGAATGC
* * * * ****
2928125 TCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGATC
66 GCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCGGGTCCCTCGATC
* ** * *
2928190 TGGCTGGGGCTTATACATGGAATGAACTC
131 CGATTGGGGCTTAGACAGGGAATGAACTC
* * * *
2928219 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTC-GATTGGAGAGCCAGAATG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-TCGAAGAGCCAGAATG
* * * * **
2928283 CGCAAGCCGAGGATTGGCCCGATCCCTCTCAGCGTGTTGTAGATCCCACTA-CGGGTCCCTCGAT
65 CGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCGGGTCCCTCGAT
* * *
2928347 CCGGTTGGGGCTTAGACCGGGAATGAACTT
130 CCGATTGGGGCTTAGACAGGGAATGAACTC
* * * **
2928377 CGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCAGTC-GATCGGACAG-GTAAG-A
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-TC-GA-AGAGCCAGAA
* * * * ** *
2928439 TGGGCAAGCCGAGGATCGGCTCGATCCCCCTCTGTGTGTTGCTGTCGATCTGATCTTAGACTGGG
63 TGCGCAAGCCGAGGATCGGCCCGATCCCCCTC--TGCG-TGCTGCCGATCCCA-C-T--ACCGGG
** ** * *
2928504 --AATTAACTCCG-TAT---GCTTACACTGGGAATGAACTC
121 TCCCTCGA-TCCGAT-TGGGGCTTAGACAGGGAATGAACTC
* * * * * * * * * * *
2928539 CGTATGCCTAAGTCAACCCACAAAACGATCATACGGGTGCTAAG-CAGGCCGGAGAGGCATAATG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA-GTCGAAGAGCCAGAATG
* * * * * * * * * ****
2928603 CTCAAGCCAAGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCTG-
65 CGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCGGGTCCCTC-GA
* ** **
2928667 TTCGGCTGGGGCTTAGACATCGAATGAACTC
129 TCCGATTGGGGCTTAGACAGGGAATGAACTC
* ** * *
2928698 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAGCTGGCCGAAGAGGCAGAATGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGCCAGAATGC
* * * *
2928763 GTAAGCTGGGGATCGGCCCGAT-CCCCTCTACGTGCT
66 GCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCT
2928799 ATCGATCCTG
Statistics
Matches: 679, Mismatches: 178, Indels: 88
0.72 0.19 0.09
Matches are distributed among these distances:
155 2 0.00
156 5 0.01
157 5 0.01
158 210 0.31
159 213 0.31
160 11 0.02
161 19 0.03
162 187 0.28
163 5 0.01
164 7 0.01
165 8 0.01
166 7 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGTCGAAGAGCCAGAATGC
GCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTACCGGGTCCCTCGATC
CGATTGGGGCTTAGACAGGGAATGAACTC
Found at i:2928065 original size:26 final size:26
Alignment explanation
Indices: 2928016--2928066 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
2928006 AGTCCGATCA
* * *
2928016 TAGATTGGGAATGAGCTCTATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
2928042 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
2928067 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:2928244 original size:159 final size:159
Alignment explanation
Indices: 2927740--2928798 Score: 580
Period size: 158 Copynumber: 6.6 Consensus size: 159
2927730 GAATGCGCTA
** * * * ** * * *
2927740 CGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGCGCTCATTCGGCCGAAGAGCCAGAATGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGTCGATCGGAGAGGCATAATGC
* ** * * ***** *
2927805 GCAAGCCAAGGATCGGCCCCTTCCCCCTCTGCGTGCTGCCGATCCCACTA-TGGGTCCCTCTATC
66 GCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCGATC
* ** *
2927869 CGATTGGGGCTTAGATC-GGGAATGAACTC
131 TGGCTGGGGCTTAGA-CATGGAATGAACTC
* ** * * * * * **
2927898 TGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGGCGCTCA-ACCAGTCAGAGAGGTAGGATG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGTCGA-TCGGAGAGGCATAATG
** * * * * ***
2927962 CATAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCTG-CTGT--TAGT-CCGATCATAGATTG
65 CGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTACC-A-CA-ACCCT-
* * ***
2928023 GGA-ATGAGCTCTATATGCTTAGAC-TGGGAATGAACTC
126 CGATCTG-G--CT-GGGGCTTAGACAT-GGAATGAACTC
* * * * *
2928060 CGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCAGAG-CCAGTCGGAGAGGCATAACG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGTCGA-TCGGAGAGGCATAATG
** * * *
2928124 TTCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTACCACAACCCTCGAT
65 CGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCGAT
*
2928189 CTGGCTGGGGCTTATACATGGAATGAACTC
130 CTGGCTGGGGCTTAGACATGGAATGAACTC
* * * * *
2928219 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATTGGAGAGCCAGAATGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGTCGATCGGAGAGGCATAATGC
* * * * * * ****
2928284 GCAAGCCGAGGATTGGCCCGATCCCTCTCAGCGTGTTGTAGATCCCACTA-CGGGTCCCTCGATC
66 GCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCGATC
* * ** *
2928348 CGGTTGGGGCTTAGACCGGGAATGAACTT
131 TGGCTGGGGCTTAGACATGGAATGAACTC
* * * * *
2928377 CGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCAGTCGATCGGACAGGTA-AGATG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGTCGATCGGAGAGGCATA-ATG
* * * * * * * **
2928441 GGCAAGCCGAGGATCGGCTCGATCCCCCTCTGTGTGTTG-CTGT-CGATCTGATCTTAGA--CTG
65 CGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCA-CT-ACCACA-ACCCT-
* ** ** *
2928502 GGAAT-TAACTCCGTATGCTTACAC-TGGGAATGAACTC
126 CG-ATCTGGCT--G-GGGCTTAGACAT-GGAATGAACTC
* * * * * * **
2928539 CGTATGCCTAAGTCAACCCACAAAACGATCATACGGGTGCTA-AG-CAGGCCGGAGAGGCATAAT
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGC-ACAGTC-GATCGGAGAGGCATAAT
* * * * * * *
2928602 GCTCAAGCCAAGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCTG
64 GCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTC-G
* *
2928667 TTC-GGCTGGGGCTTAGACATCGAATGAACTC
128 ATCTGGCTGGGGCTTAGACATGGAATGAACTC
* * ** * *
2928698 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG-CTGGCCGAAGAGGCAGAATG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGTC-GATCGGAGAGGCATAATG
* * * *
2928762 CGTAAGCTGGGGATCGGCCCGAT-CCCCTCTACGTGCT
65 CGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCT
2928799 ATCGATCCTG
Statistics
Matches: 671, Mismatches: 189, Indels: 82
0.71 0.20 0.09
Matches are distributed among these distances:
155 2 0.00
156 2 0.00
157 7 0.01
158 218 0.32
159 199 0.30
160 9 0.01
161 5 0.01
162 205 0.31
163 16 0.02
164 3 0.00
165 3 0.00
166 2 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (159 bp):
CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCACAGTCGATCGGAGAGGCATAATGC
GCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCCACTACCACAACCCTCGATC
TGGCTGGGGCTTAGACATGGAATGAACTC
Found at i:2928529 original size:26 final size:26
Alignment explanation
Indices: 2928493--2928545 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2928483 TCGATCTGAT
* *
2928493 CTTAGACTGGGAATTAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2928519 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2928545 C
1 C
2928546 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2928594 original size:479 final size:479
Alignment explanation
Indices: 2927740--2928788 Score: 1338
Period size: 479 Copynumber: 2.2 Consensus size: 479
2927730 GAATGCGCTA
** * * *
2927740 CGTATGCCTAAGTGAACCCATGAAACGAGCGTGCGGGCGCTCATTCGGCCGAAGAGCCAGAATGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGCCAGAATGC
* * * * *
2927805 GCAAGCCAAGGATCGGCCCCTTCCCCCTCTGCGTGCTGCCGATCCCACTATGGGTCCCTCTATCC
66 GCAAGCCAAGGATCGGCCCCATCCCCCTCAGCGTGCTGCAGATCCCACTACGGGTCCCTCGATCC
* *
2927870 GATTGGGGCTTAGATCGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAATAAGCGTGCGGG
131 GATTGGGGCTTAGACCGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGG
* * *
2927935 CGCTCAACCAGTCAGAGAGGTAGGATGCATAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCT
196 CGCTCAACCAGTCAGACAGGTAAGATGCACAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCT
* * * * *
2928000 GCTGTTAGTCCGATCATAGATTGGGAATGAGCTCTATATGCTTAGACTGGGAATGAACTCCGTAT
261 GCTGTGAGTCCGATCATAGACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACTCCGTAT
** * * * *
2928065 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCAGAGCCAGTCGGAGAGGCATAACGTTCAAG
326 GCCTAAGTCAACCCACAAAACGAGCATACGGGCGCAGAGCCAGCCGGAGAGGCATAACGCTCAAG
** *
2928130 CCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTACCACAACCCTC-GATCTGGC
391 CCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTACCACAACCCTCTGATC-GGC
* *
2928194 TGGGGCTTATACATGGAATGAACTC
455 TGGGGCTTAGACATCGAATGAACTC
* ** *
2928219 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGATTGGAGAGCCAGAATGC
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGCCAGAATGC
* * * * * *
2928284 GCAAGCCGAGGATTGGCCCGATCCCTCTCAGCGTGTTGTAGATCCCACTACGGGTCCCTCGATCC
66 GCAAGCCAAGGATCGGCCCCATCCCCCTCAGCGTGCTGCAGATCCCACTACGGGTCCCTCGATCC
* * * *
2928349 GGTTGGGGCTTAGACCGGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGG
131 GATTGGGGCTTAGACCGGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACAAGCGTGCGG
** * ** *
2928413 GCGCTCAGTC-GATCGGACAGGTAAGATGGGCAAGCCGAGGATCGGCTCGATCCCCCTCTGTGTG
195 GCGCTCAACCAG-TCAGACAGGTAAGATGCACAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTG
* * * * *
2928477 TTGCTGTCGA-TCTGATCTTAGACTGGGAATTAACTCCGTATGCTTACACTGGGAATGAACTCCG
259 CTGCTGT-GAGTCCGATCATAGACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACTCCG
* * *
2928541 TATGCCTAAGTCAACCCACAAAACGATCATACGGGTGCTA-AG-CAGGCCGGAGAGGCATAATGC
323 TATGCCTAAGTCAACCCACAAAACGAGCATACGGGCGC-AGAGCCA-GCCGGAGAGGCATAACGC
* * * * *
2928604 TCAAGCCAAGGATCAGCCCGGTCCCCCTCTGTGTGCTGTCGGTCCCGCTGCCACAACCCTCTGTT
386 TCAAGCCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTACCACAACCCTCTGAT
2928669 CGGCTGGGGCTTAGACATCGAATGAACTC
451 CGGCTGGGGCTTAGACATCGAATGAACTC
* * *
2928698 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGGGCTCAG-CTGGCCGAAGAGGCAGAATG
1 CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GACCGAAGAGCCAGAATG
* *** *
2928762 CGTAAGCTGGGGATCGGCCCGATCCCC
65 CGCAAGCCAAGGATCGGCCCCATCCCC
2928789 TCTACGTGCT
Statistics
Matches: 488, Mismatches: 75, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
478 5 0.01
479 478 0.98
480 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.20
Consensus pattern (479 bp):
CGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCGAAGAGCCAGAATGC
GCAAGCCAAGGATCGGCCCCATCCCCCTCAGCGTGCTGCAGATCCCACTACGGGTCCCTCGATCC
GATTGGGGCTTAGACCGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGG
CGCTCAACCAGTCAGACAGGTAAGATGCACAAGCCGAGGATCGGCTCGATCCCCCTCTGCGTGCT
GCTGTGAGTCCGATCATAGACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACAAAACGAGCATACGGGCGCAGAGCCAGCCGGAGAGGCATAACGCTCAAG
CCAAGGATCAGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCACTACCACAACCCTCTGATCGGCT
GGGGCTTAGACATCGAATGAACTC
Found at i:2928877 original size:26 final size:26
Alignment explanation
Indices: 2928848--2928900 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2928838 CCGGTCCGAT
2928848 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
2928874 CTTAGACTAGTGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
2928900 C
1 C
2928901 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:2935680 original size:13 final size:13
Alignment explanation
Indices: 2935662--2935686 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2935652 CAATGGCACA
2935662 TGATGGCACATGG
1 TGATGGCACATGG
2935675 TGATGGCACATG
1 TGATGGCACATG
2935687 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2935749 original size:44 final size:44
Alignment explanation
Indices: 2935679--2935795 Score: 130
Period size: 44 Copynumber: 2.6 Consensus size: 44
2935669 ACATGGTGAT
* * * *
2935679 GGCACATGCATCGACCATCATCGGCACAGGCTA-CCCTTTGGTACG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTAGCCC--TGGTACG
*
2935724 GGCACTTGCC-CGACCACCATTGGCACAAGCTAGGCCCTGGTACG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTA-GCCCTGGTACG
* *
2935768 GGCAGTTGCCTCGATCACCATCGGCACA
1 GGCACTTGCCTCGACCACCATCGGCACA
2935796 TGCCGGCCTT
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 35 0.57
45 23 0.38
46 3 0.05
ACGTcount: A:0.21, C:0.35, G:0.26, T:0.18
Consensus pattern (44 bp):
GGCACTTGCCTCGACCACCATCGGCACAAGCTAGCCCTGGTACG
Found at i:2935821 original size:45 final size:45
Alignment explanation
Indices: 2935767--2935977 Score: 262
Period size: 45 Copynumber: 4.7 Consensus size: 45
2935757 GCCCTGGTAC
*
2935767 GGGCAGTTGCCTCGATCACCATCGGCACATGCCGGCCTTTGGTGT
1 GGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCCTTTGGTGT
*
2935812 GGGCGGTTGCCTCGATCACCATCGGCACTTGCCGGCCTTTGGTGT
1 GGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCCTTTGGTGT
* *
2935857 GGGCGGTTGCCTAGATCACCATCGGCACATGCCAGCCTTTGGTGT
1 GGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCCTTTGGTGT
* * * * * ** ** * *
2935902 GGGTGATTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTGC
1 GGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCCTTTGGTGT
*
2935947 GGGCGGTTGCCTCGA-CTACCATCGACACATG
1 GGGCGGTTGCCTCGATC-ACCATCGGCACATG
2935978 TCGAGCTTCG
Statistics
Matches: 144, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 1 0.01
45 143 0.99
ACGTcount: A:0.16, C:0.31, G:0.30, T:0.23
Consensus pattern (45 bp):
GGGCGGTTGCCTCGATCACCATCGGCACATGCCGGCCTTTGGTGT
Found at i:2935951 original size:90 final size:90
Alignment explanation
Indices: 2935697--2935977 Score: 300
Period size: 90 Copynumber: 3.1 Consensus size: 90
2935687 CATCGACCAT
* * * ** *
2935697 CATCGGCACAGGCTACCCTTTGGTACGGGC-ACTTGCC-CGACCACCATTGGCACAAGCTAGG-C
1 CATCGGCACATGCCAGCCTTTGGTGTGGGCGA-TTGCCTCGACCACCATCGGCACAAGCT-GGCC
* *
2935759 CCTGGTACGGGCAGTTGCCTCGATCAC
64 CCTGGTGCGGGCGGTTGCCTCGATCAC
* * * ** * **
2935786 CATCGGCACATGCCGGCCTTTGGTGTGGGCGGTTGCCTCGATCACCATCGGCACTTGCCGGCCTT
1 CATCGGCACATGCCAGCCTTTGGTGTGGGCGATTGCCTCGACCACCATCGGCACAAGCTGGCCCC
* *
2935851 TGGTGTGGGCGGTTGCCTAGATCAC
66 TGGTGCGGGCGGTTGCCTCGATCAC
* * *
2935876 CATCGGCACATGCCAGCCTTTGGTGTGGGTGATTGCCTCGACCACCATCGACACAAGATGGCCCC
1 CATCGGCACATGCCAGCCTTTGGTGTGGGCGATTGCCTCGACCACCATCGGCACAAGCTGGCCCC
*
2935941 TAGTGCGGGCGGTTGCCTCGA-CTAC
66 TGGTGCGGGCGGTTGCCTCGATC-AC
*
2935966 CATCGACACATG
1 CATCGGCACATG
2935978 TCGAGCTTCG
Statistics
Matches: 155, Mismatches: 33, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
89 32 0.21
90 123 0.79
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (90 bp):
CATCGGCACATGCCAGCCTTTGGTGTGGGCGATTGCCTCGACCACCATCGGCACAAGCTGGCCCC
TGGTGCGGGCGGTTGCCTCGATCAC
Found at i:2936447 original size:26 final size:26
Alignment explanation
Indices: 2936418--2936468 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2936408 GGTCCGATCA
*
2936418 TAGACTGGGAATGTACCCCATATGCT
1 TAGACTGGGAATGAACCCCATATGCT
*
2936444 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACCCCATATGC
2936469 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACCCCATATGCT
Found at i:2936687 original size:159 final size:159
Alignment explanation
Indices: 2936522--2936826 Score: 394
Period size: 159 Copynumber: 1.9 Consensus size: 159
2936512 AGAGAGACGT
* * * ** * * * **
2936522 AATGCACAAGTCAAGGATCAGCCCGGTCCCCCTCTATGTGCTGTCAGTCTCGCTGTCACAACCCT
1 AATGCACAAGCCAAGGATCAGCCCGGTCCCCCACTACGTGCTACCAATCCCACTACCACAACCCT
* * * * * *
2936587 TGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAACCCACTAAATGATCG
66 CGATCCGACTGGGGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCG
2936652 TACGGGGGCTTAGCCGACAGGAGAGGCAG
131 TACGGGGGCTTAGCCGACAGGAGAGGCAG
* ** * *
2936681 AATGCACAAGCCGAGGATTGGCCCGGTCCTCCACTGCGTGCTACCAATCCCACTACCACAACCCT
1 AATGCACAAGCCAAGGATCAGCCCGGTCCCCCACTACGTGCTACCAATCCCACTACCACAACCCT
** *
2936746 CGATCCGGTTGGGGCTTAGACATGGAATAAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCG
66 CGATCCGACTGGGGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCG
2936811 TACGGGGGCTTAGCCG
131 TACGGGGGCTTAGCCG
2936827 GTCGGAGAGG
Statistics
Matches: 122, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
159 122 1.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (159 bp):
AATGCACAAGCCAAGGATCAGCCCGGTCCCCCACTACGTGCTACCAATCCCACTACCACAACCCT
CGATCCGACTGGGGCTTAGACATGGAATAAACTCCGTACGCCTAAGCCAACCCACGAAACGAGCG
TACGGGGGCTTAGCCGACAGGAGAGGCAG
Found at i:2936962 original size:26 final size:26
Alignment explanation
Indices: 2936918--2936970 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2936908 TCGGTCTGAT
*
2936918 CTTAGACTGGGAAAAAACTTCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
* **
2936944 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAAAACTCCGTATG
2936970 C
1 C
2936971 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAAAACTCCGTATG
Found at i:2937995 original size:90 final size:90
Alignment explanation
Indices: 2937901--2938100 Score: 211
Period size: 90 Copynumber: 2.2 Consensus size: 90
2937891 TGGGCACTTC
* * * * * * * *
2937901 CCTCGATCGCCATCGGCACAAGCTGGGCCCTAGTGCGAGCGGTTGCCTCGATCACCATCGACATA
1 CCTCGACCACCATCGGCACAAGATGGCCCCTAGTACGAGCGGTTGCATCGAACACCATCGACACA
*
2937966 TGCCAGCCCTTGGTGCAGGCGATTG
66 TGCCAGCCCATGGTGCAGGCGATTG
* * * * * *
2937991 CCTCGACCACTATCGGTACAAGATGGCCCCTGGTACGGGTGGTTGCATCGAACATCATCGACACA
1 CCTCGACCACCATCGGCACAAGATGGCCCCTAGTACGAGCGGTTGCATCGAACACCATCGACACA
** * * * *
2938056 TGCTGGGCCATGGTGCGGGTGGTTG
66 TGCCAGCCCATGGTGCAGGCGATTG
2938081 CCTCGACCACCATCGGCACA
1 CCTCGACCACCATCGGCACA
2938101 TATCGAGCCT
Statistics
Matches: 87, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (90 bp):
CCTCGACCACCATCGGCACAAGATGGCCCCTAGTACGAGCGGTTGCATCGAACACCATCGACACA
TGCCAGCCCATGGTGCAGGCGATTG
Found at i:2938095 original size:45 final size:45
Alignment explanation
Indices: 2937901--2938101 Score: 159
Period size: 45 Copynumber: 4.5 Consensus size: 45
2937891 TGGGCACTTC
* * * * * *
2937901 CCTCGATCGCCATCGGCACAAGCTGGGCCCTAGTGCGAGCGGTTG
1 CCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTG
* * * ** * * *
2937946 CCTCGATCACCATCGACATATGCCAGCCCTTGGTGCAGGCGATTG
1 CCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTG
* * * * * *
2937991 CCTCGACCACTATCGGTACAAGATGGCCCCTGGTACGGGTGGTTG
1 CCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTG
* * * * * * *
2938036 CATCGAACATCATCGACACATGCTGGGCCATGGTGCGGGTGGTTG
1 CCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTG
2938081 CCTCGACCACCATCGGCACAT
1 CCTCGACCACCATCGGCACAT
2938102 ATCGAGCCTC
Statistics
Matches: 115, Mismatches: 41, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
45 115 1.00
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACATGCTGGCCCCTGGTGCGGGCGGTTG
Found at i:2938581 original size:26 final size:26
Alignment explanation
Indices: 2938543--2938595 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2938533 CCGATCCGAT
* *
2938543 CTTAGATTGGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
* *
2938569 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATAAACTCCATATG
2938595 C
1 C
2938596 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:2939498 original size:31 final size:27
Alignment explanation
Indices: 2939460--2939559 Score: 132
Period size: 26 Copynumber: 3.6 Consensus size: 27
2939450 CTAAAAACTC
2939460 GAGTGAACTCCGTATGCTTAGACTGGG
1 GAGTGAACTCCGTATGCTTAGACTGGG
* *
2939487 AATTGAGTGAACTCTGTATGCTTAGACTAGG
1 ----GAGTGAACTCCGTATGCTTAGACTGGG
2939518 GA-TGAACTCCGTATGCTTAGACTGGG
1 GAGTGAACTCCGTATGCTTAGACTGGG
2939544 GA-TGAACTCCGTATGC
1 GAGTGAACTCCGTATGC
2939560 CTAAGGAAAC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
26 38 0.58
27 2 0.03
31 25 0.38
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (27 bp):
GAGTGAACTCCGTATGCTTAGACTGGG
Found at i:2940498 original size:45 final size:45
Alignment explanation
Indices: 2940449--2940540 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
2940439 GCATGGTGAT
* * *
2940449 GGCACATGCATCGACCATCATCGGCACAGGT-TACCCTTTGGTACG
1 GGCACATACATCGACCACCATCGGCACAGGTCGACCC-TTGGTACG
* * * *
2940494 GGCACTTACCTCGACCGCCATCGGCACATGTCGACCCTTGGTACG
1 GGCACATACATCGACCACCATCGGCACAGGTCGACCCTTGGTACG
2940539 GG
1 GG
2940541 TGATTGCCTC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 35 0.90
46 4 0.10
ACGTcount: A:0.20, C:0.34, G:0.26, T:0.21
Consensus pattern (45 bp):
GGCACATACATCGACCACCATCGGCACAGGTCGACCCTTGGTACG
Found at i:2940560 original size:45 final size:45
Alignment explanation
Indices: 2940462--2940563 Score: 109
Period size: 45 Copynumber: 2.3 Consensus size: 45
2940452 ACATGCATCG
* * *
2940462 ACCATCATCGGCACAGGTTACCCTTTGGTACGGGCACTTACCTCG
1 ACCACCATCGGCACAGGTGACCCTTTGGTACGGGCACTTACCTCA
* * * *
2940507 ACCGCCATCGGCACATGTCGACCC-TTGGTACGGGTGA-TTGCCTCA
1 ACCACCATCGGCACAGGT-GACCCTTTGGTACGGG-CACTTACCTCA
2940552 ACCACCATCGGC
1 ACCACCATCGGC
2940564 TCAAGATGGC
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
45 42 0.89
46 5 0.11
ACGTcount: A:0.20, C:0.35, G:0.24, T:0.22
Consensus pattern (45 bp):
ACCACCATCGGCACAGGTGACCCTTTGGTACGGGCACTTACCTCA
Found at i:2941159 original size:26 final size:26
Alignment explanation
Indices: 2941108--2941160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2941098 CTAATCTGAT
**
2941108 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2941134 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2941160 C
1 C
2941161 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2942514 original size:45 final size:45
Alignment explanation
Indices: 2942465--2942572 Score: 110
Period size: 45 Copynumber: 2.4 Consensus size: 45
2942455 CCTCGATCGG
* * * * *
2942465 CATCGACACAAGCTGGGCCCTGGTGTGGGTGGTTGCCTC-AGCCAC
1 CATCGACACAAGCTGGGCCCTAGTGCGGGCGGTTGCATCGA-ACAC
* * * *
2942510 CATCGGCATAAGATGGCCCCTAGTGCGGGCGGTTGCATCGAACAC
1 CATCGACACAAGCTGGGCCCTAGTGCGGGCGGTTGCATCGAACAC
*
2942555 CATCGACACATGCTGGGC
1 CATCGACACAAGCTGGGC
2942573 GGTTGCCTTG
Statistics
Matches: 48, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (45 bp):
CATCGACACAAGCTGGGCCCTAGTGCGGGCGGTTGCATCGAACAC
Found at i:2942573 original size:33 final size:33
Alignment explanation
Indices: 2942536--2942599 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
2942526 CCCCTAGTGC
2942536 GGGCGGTTGCATCGAACACCATCGACACATGCT
1 GGGCGGTTGCATCGAACACCATCGACACATGCT
* * *
2942569 GGGCGGTTGCCTTGACCACCATCGACACATG
1 GGGCGGTTGCATCGAACACCATCGACACATG
2942600 TCGAGCCCTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (33 bp):
GGGCGGTTGCATCGAACACCATCGACACATGCT
Found at i:2943409 original size:26 final size:26
Alignment explanation
Indices: 2943370--2943420 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
2943360 GGTCCCATCC
2943370 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
2943396 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
2943421 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:2943759 original size:26 final size:26
Alignment explanation
Indices: 2943723--2943775 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2943713 CCGATCCCAT
* *
2943723 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2943749 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2943775 C
1 C
2943776 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2943826 original size:355 final size:355
Alignment explanation
Indices: 2943039--2943846 Score: 1240
Period size: 355 Copynumber: 2.3 Consensus size: 355
2943029 TCGATCCGAT
* *
2943039 CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
* *
2943104 CGACTGGAGAGGCATGATGCACAAG-CTGGGGATTGGCCCAGTCCCCCTCTGCGTGCTATCAGTC
66 CGACTGGAGAGGCATGATGCGCAAGTC-GGGGATTGGCCCAGTCCCCCTCTGCATGCTATCAGTC
* * *
2943168 CTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACGTGGGATGAACTCTGTATCCCTAAGCCA
130 CCGCTACCACAACCCTCAGTCCGACTAGGGCTTAGACGTGGGATGAACTCTGTATCCCTAAGCCA
* * * * *
2943233 ACCCATGAAATGAATGTGCGGGGGCTTAGCCGATCGAAGAGGCAAAATGCGTAAGCCAAGGATCG
195 ACCCACGAAACGAATGTACGGGGGCTTAGCCGACCGAAGAGGCAAAATGCGTAAGCCAAGGATCA
** *
2943298 GCCTGATCCCCCCTGCGTGCTATCGATCCTGCTGGTGGTCCTACTGCCGCAACCCTTGGTTTGGT
260 GCCTGATCCCCCCTGCGTGCTATCGATCCTGCTGGTGGTCCTACTGCCGCAACCCTTGGTCCGAT
2943363 CCCATCCTAGACTGGGAATGAACTCCGTATG
325 CCCATCCTAGACTGGGAATGAACTCCGTATG
*
2943394 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGTTGAGC
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
* *
2943459 CAACTGGAGAGGCATGATGCGCAAGTCGGGGATTGGCCCAGTCCCTCTCTGCATGCTATCAGTCC
66 CGACTGGAGAGGCATGATGCGCAAGTCGGGGATTGGCCCAGTCCCCCTCTGCATGCTATCAGTCC
* * *
2943524 CGCTACCACAACCCTCGGTCCGGCTAGGGCTTAGACGTGGGATGAACTCTGTATGCCTAAGCCAA
131 CGCTACCACAACCCTCAGTCCGACTAGGGCTTAGACGTGGGATGAACTCTGTATCCCTAAGCCAA
*
2943589 CCCACGAAACGAATGTACGGGGGCTTAGCCGACCGAAGAGGCAAAATGTGTAAGCCAAGGATCAG
196 CCCACGAAACGAATGTACGGGGGCTTAGCCGACCGAAGAGGCAAAATGCGTAAGCCAAGGATCAG
* * * *
2943654 CCTGATCCCCCCTGCGTGCTGTCGATCCTGCTGGTGGTCCTGCTGTCGTAACCCTTGGTCCGATC
261 CCTGATCCCCCCTGCGTGCTATCGATCCTGCTGGTGGTCCTACTGCCGCAACCCTTGGTCCGATC
* * *
2943719 CCATCTTAGATTGGGAATGAACTTCGTATG
326 CCATCCTAGACTGGGAATGAACTCCGTATG
* ** * * * *
2943749 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTAGGCGCTCAGT
1 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
* ** *
2943814 CGGCCAGAGAGGCAGGATGCGCAAGTCGGGGAT
66 CGACTGGAGAGGCATGATGCGCAAGTCGGGGAT
2943847 CGACCCGATC
Statistics
Matches: 410, Mismatches: 42, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
355 409 1.00
356 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (355 bp):
CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGTTGAGC
CGACTGGAGAGGCATGATGCGCAAGTCGGGGATTGGCCCAGTCCCCCTCTGCATGCTATCAGTCC
CGCTACCACAACCCTCAGTCCGACTAGGGCTTAGACGTGGGATGAACTCTGTATCCCTAAGCCAA
CCCACGAAACGAATGTACGGGGGCTTAGCCGACCGAAGAGGCAAAATGCGTAAGCCAAGGATCAG
CCTGATCCCCCCTGCGTGCTATCGATCCTGCTGGTGGTCCTACTGCCGCAACCCTTGGTCCGATC
CCATCCTAGACTGGGAATGAACTCCGTATG
Found at i:2944883 original size:183 final size:184
Alignment explanation
Indices: 2944657--2945019 Score: 568
Period size: 183 Copynumber: 2.0 Consensus size: 184
2944647 ATGGTGATGG
*
2944657 CACATGCATCGACCATCATCGGCAGAGGCTACCCTTTGGTACGGGCCCTTGCCTCGACCACCATC
1 CACATGCATCGACCATCATCGGCACAGGCTACCCTTTGGTACGGGCCCTTGCCTCGACCACCATC
* * * *
2944722 GGTACAAGCTGGGCCTTAGTGCGGGTGGTTGCC-CGATCACCATCGGCACATGCCAGCCCTTGGT
66 GGTACAAGCTGGGCCCTAGTGCGGGCGGTTGCCTCAATCACCATCAGCACATGCCAGCCCTTGGT
*
2944786 GCGGGCAATTACGTCGACCACCATC-AGCACAAGATGACCCCTAGTGCGGGTAGT
131 GCGGGCAATTACGTCGACCACCATCGA-CACAAGATGACCCCTAGTACGGGTAGT
* **
2944840 CACATGCATCGACCATCATCGGCACAGGCTGCCCTTTGGTACGGGCCCTTGCCTCGACTGCCATC
1 CACATGCATCGACCATCATCGGCACAGGCTACCCTTTGGTACGGGCCCTTGCCTCGACCACCATC
* * *
2944905 GGTACAAGCTGGGCCCTGGTGCGGGCGGTTGCCTTAATCACCATCAGCACATGCCGGCCCTTGGT
66 GGTACAAGCTGGGCCCTAGTGCGGGCGGTTGCCTCAATCACCATCAGCACATGCCAGCCCTTGGT
* * *
2944970 GCGGGCAATTGCGTTGACCACCATCGACATAAGATGACCCCTAGTACGGG
131 GCGGGCAATTACGTCGACCACCATCGACACAAGATGACCCCTAGTACGGG
2945020 CAGTTGCATC
Statistics
Matches: 163, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
183 91 0.56
184 71 0.44
185 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (184 bp):
CACATGCATCGACCATCATCGGCACAGGCTACCCTTTGGTACGGGCCCTTGCCTCGACCACCATC
GGTACAAGCTGGGCCCTAGTGCGGGCGGTTGCCTCAATCACCATCAGCACATGCCAGCCCTTGGT
GCGGGCAATTACGTCGACCACCATCGACACAAGATGACCCCTAGTACGGGTAGT
Found at i:2945037 original size:90 final size:90
Alignment explanation
Indices: 2944661--2945048 Score: 255
Period size: 90 Copynumber: 4.3 Consensus size: 90
2944651 TGATGGCACA
* * * * * * ** * **
2944661 TGCATCGACCATCATCGGCAGAGGCTA-CCCTTTGGTACGGGCCCTTGCCTCGACCACCATCGGT
1 TGCATCGAACACCATCGGCACATGCCAGCCC-TTGGTGCGGGCAATTGCGTCGACCACCATCGAC
* ** * **
2944725 ACAAGCTGGGCCTTAGTGCGGGTGGT
65 ACAAGATGACCCCTAGTGCGGGCAGT
* * *
2944751 TGC-CCGATCACCATCGGCACATGCCAGCCCTTGGTGCGGGCAATTACGTCGACCACCATC-AGC
1 TGCATCGAACACCATCGGCACATGCCAGCCCTTGGTGCGGGCAATTGCGTCGACCACCATCGA-C
*
2944814 ACAAGATGACCCCTAGTGCGGGTAGT
65 ACAAGATGACCCCTAGTGCGGGCAGT
* * * * * ** * **
2944840 CACATGCATCGACCATCATCGGCACA-GGCTGCCCTTTGGTACGGGCCCTTGCCTCGACTGCCAT
1 ----TGCATCGAACACCATCGGCACATGCCAGCCC-TTGGTGCGGGCAATTGCGTCGACCACCAT
** * ** * *
2944904 CGGTACAAGCTGGGCCCTGGTGCGGGCGGT
61 CGACACAAGATGACCCCTAGTGCGGGCAGT
* * * * *
2944934 TGCCT-TAATCACCATCAGCACATGCCGGCCCTTGGTGCGGGCAATTGCGTTGACCACCATCGAC
1 TGCATCGAA-CACCATCGGCACATGCCAGCCCTTGGTGCGGGCAATTGCGTCGACCACCATCGAC
* *
2944998 ATAAGATGACCCCTAGTACGGGCAGT
65 ACAAGATGACCCCTAGTGCGGGCAGT
*
2945024 TGCATCGAACACCATCGGTACATGC
1 TGCATCGAACACCATCGGCACATGC
2945049 TGGGTCGTGG
Statistics
Matches: 221, Mismatches: 65, Indels: 24
0.71 0.21 0.08
Matches are distributed among these distances:
89 64 0.29
90 82 0.37
91 8 0.04
93 9 0.04
94 58 0.26
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.20
Consensus pattern (90 bp):
TGCATCGAACACCATCGGCACATGCCAGCCCTTGGTGCGGGCAATTGCGTCGACCACCATCGACA
CAAGATGACCCCTAGTGCGGGCAGT
Found at i:2945595 original size:26 final size:26
Alignment explanation
Indices: 2945544--2945596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2945534 TCAGTTCGAT
*
2945544 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
2945570 CTTAGACTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2945596 C
1 C
2945597 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2946943 original size:45 final size:45
Alignment explanation
Indices: 2946894--2947096 Score: 212
Period size: 45 Copynumber: 4.5 Consensus size: 45
2946884 GTATGAGCAC
* *
2946894 TTGCCTTGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGA
* * * * * *
2946939 TTGCCTCGATCACCATCGACACATG-TCGACCCTTGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCC-TGGTGCAGGCGA
* *
2946984 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGA
* * ** * * *
2947029 TTGCATCAAAGACCATCGACACATGCTGGGCCGTGGTGC-GAGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAG-GCGA
*
2947074 TTGCCTCGACCACCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
2947097 TGCCAAGCCT
Statistics
Matches: 126, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
44 6 0.05
45 115 0.91
46 5 0.04
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGA
Found at i:2946988 original size:90 final size:90
Alignment explanation
Indices: 2946894--2947096 Score: 273
Period size: 90 Copynumber: 2.3 Consensus size: 90
2946884 GTATGAGCAC
* * * * * * *
2946894 TTGCCTTGACCACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGATCACCATCGAC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGATTGCATCAAACACCATCGAC
* *
2946959 ACATG-TCGACCCTTGGTGCGGGCGA
66 ACATGCT-GACCCGTGGTGCGAGCGA
*
2946984 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGATTGCATCAAAGACCATCGAC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGATTGCATCAAACACCATCGAC
**
2947049 ACATGCTGGGCCGTGGTGCGAGCGA
66 ACATGCTGACCCGTGGTGCGAGCGA
*
2947074 TTGCCTCGACCACCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
2947097 TGCCAAGCCT
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 98 0.99
91 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.18
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCAGGCGATTGCATCAAACACCATCGAC
ACATGCTGACCCGTGGTGCGAGCGA
Found at i:2947587 original size:26 final size:26
Alignment explanation
Indices: 2947551--2947603 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2947541 CTGGTCCAAT
*
2947551 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2947577 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2947603 C
1 C
2947604 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2947935 original size:26 final size:26
Alignment explanation
Indices: 2947906--2947958 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2947896 CCGATTCGAT
*
2947906 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2947932 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2947958 C
1 C
2947959 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2949022 original size:45 final size:44
Alignment explanation
Indices: 2948945--2949058 Score: 113
Period size: 45 Copynumber: 2.5 Consensus size: 44
2948935 GGTGCAGGCA
* * * * *
2948945 GTTGCCTCGATCACCATCGACACATGCCGGCCCTTGCTGT-GCG
1 GTTGCCTCGAACACCATCGGCACAAGACGGCCCCTGCTGTAGCG
* * *
2948988 TGATTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTAGGCG
1 -G-TTGCCTCGAACACCATCGGCACAAGACGGCCCCTGCTGTA-GCG
*
2949035 GTTGCATCGAACACCATCGGCACA
1 GTTGCCTCGAACACCATCGGCACA
2949059 TGCTGGGTCG
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
44 1 0.02
45 53 0.91
46 1 0.02
47 3 0.05
ACGTcount: A:0.19, C:0.34, G:0.26, T:0.20
Consensus pattern (44 bp):
GTTGCCTCGAACACCATCGGCACAAGACGGCCCCTGCTGTAGCG
Found at i:2949073 original size:45 final size:45
Alignment explanation
Indices: 2948991--2949101 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
2948981 CTGTGCGTGA
*
2948991 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTAAGCGG
* * * * ** *
2949036 TTGCATCGAACACCATCGGCACATGCTGGGTCGTGGTGTAAGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTAAGCGG
*
2949081 TTACCTCGACCACCATCGGCA
1 TTGCCTCGACCACCATCGGCA
2949102 TATCCCGAGC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGTAAGCGG
Found at i:2949594 original size:26 final size:26
Alignment explanation
Indices: 2949558--2949610 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2949548 TCAGTCCGAT
2949558 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2949584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2949610 C
1 C
2949611 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2949949 original size:26 final size:26
Alignment explanation
Indices: 2949913--2949965 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2949903 TCGGTCTGAT
2949913 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2949939 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2949965 C
1 C
2949966 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2950942 original size:45 final size:44
Alignment explanation
Indices: 2950843--2950974 Score: 131
Period size: 45 Copynumber: 2.9 Consensus size: 44
2950833 GCATGGTGAT
* * * *
2950843 GGCACATGCATCGACCGTCATCGGCACAAGCTACCCTTTGGTACG
1 GGCACTTGCCTCGACCGCCATCGGCACAAGCTACCC-TTGGTACA
*
2950888 GGCACTTGCCTCGACCGCCATCGGCACAAGCTAGGCCC-TGGTGCA
1 GGCACTTGCCTCGACCGCCATCGGCACAAGCTA--CCCTTGGTACA
* * * * *
2950933 GGCAGTTGCCTCGATCACCATCGGCACATGTCGACCCTTGGT
1 GGCACTTGCCTCGACCGCCATCGGCACAAG-CTACCCTTGGT
2950975 GTGGGTGATT
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 3 0.04
45 65 0.89
46 2 0.03
47 3 0.04
ACGTcount: A:0.19, C:0.35, G:0.27, T:0.20
Consensus pattern (44 bp):
GGCACTTGCCTCGACCGCCATCGGCACAAGCTACCCTTGGTACA
Found at i:2950974 original size:90 final size:91
Alignment explanation
Indices: 2950861--2951053 Score: 223
Period size: 90 Copynumber: 2.1 Consensus size: 91
2950851 CATCGACCGT
* * * *
2950861 CATCGGCACAAG-CTACCCTTTGGTACGGG-CACTTGCCTCGACCGCCATCGGCACAAGCTAGGC
1 CATCGGCACATGTCGACCCTTTGGTACGGGTCA-TTGCCTCGACCACCATCGGCACAAGAT-GGC
* * *
2950924 CC-TGGTGCAGGCAGTTGCCTCGATCAC
64 CCTTGCTGCAGGCAGTTGCATCGAACAC
** * *
2950951 CATCGGCACATGTCGACCC-TTGGTGTGGGTGATTGCCTCGACCACCATCGGCATAAGATGGCCC
1 CATCGGCACATGTCGACCCTTTGGTACGGGTCATTGCCTCGACCACCATCGGCACAAGATGGCCC
* *
2951015 TTGCTGCCGGCGGTTGCATCGAACAC
66 TTGCTGCAGGCAGTTGCATCGAACAC
2951041 CATCGGCACATGT
1 CATCGGCACATGT
2951054 TGGGTCGTGG
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
89 5 0.06
90 76 0.87
91 6 0.07
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (91 bp):
CATCGGCACATGTCGACCCTTTGGTACGGGTCATTGCCTCGACCACCATCGGCACAAGATGGCCC
TTGCTGCAGGCAGTTGCATCGAACAC
Found at i:2950975 original size:45 final size:45
Alignment explanation
Indices: 2950861--2951050 Score: 145
Period size: 45 Copynumber: 4.2 Consensus size: 45
2950851 CATCGACCGT
* * * * *
2950861 CATCGGCACAAG-CTACCCTTTGGTACGGGCACTTGCCTCGACCGC
1 CATCGGCACAAGTCGACCC-TTGGTGCAGGCAGTTGCCTCGACCAC
* * *
2950906 CATCGGCACAAGCTAGGCCC-TGGTGCAGGCAGTTGCCTCGATCAC
1 CATCGGCACAAG-TCGACCCTTGGTGCAGGCAGTTGCCTCGACCAC
* * **
2950951 CATCGGCACATGTCGACCCTTGGTG-TGGGTGATTGCCTCGACCAC
1 CATCGGCACAAGTCGACCCTTGGTGCAGGCAG-TTGCCTCGACCAC
* * * * * * *
2950996 CATCGGCATAAGAT-GGCCCTTGCTGCCGGCGGTTGCATCGAACAC
1 CATCGGCACAAG-TCGACCCTTGGTGCAGGCAGTTGCCTCGACCAC
2951041 CATCGGCACA
1 CATCGGCACA
2951051 TGTTGGGTCG
Statistics
Matches: 114, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
44 8 0.07
45 99 0.87
46 4 0.04
47 3 0.03
ACGTcount: A:0.19, C:0.34, G:0.27, T:0.20
Consensus pattern (45 bp):
CATCGGCACAAGTCGACCCTTGGTGCAGGCAGTTGCCTCGACCAC
Found at i:2951077 original size:90 final size:90
Alignment explanation
Indices: 2950893--2951095 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 90
2950883 GTACGGGCAC
* * * * *
2950893 TTGCCTCGACCGCCATCGGCACAAGCTAGGCCCTGGTGCAGGCAGTTGCCTCGATCACCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGATAGGCCCTGCTGCAGGCAGTTGCATCGAACACCATCGGC
* **
2950958 ACATGTCGACCCTTGGTGTGGGTGA
66 ACATGTCGACCCGTGGTGTGGACGA
* * *
2950983 TTGCCTCGACCACCATCGGCATAAGAT-GGCCCTTGCTGCCGGCGGTTGCATCGAACACCATCGG
1 TTGCCTCGACCACCATCGGCACAAGATAGGCCC-TGCTGCAGGCAGTTGCATCGAACACCATCGG
* *** *
2951047 CACATGTTGGGTCGTGGTGTGGACGG
65 CACATGTCGACCCGTGGTGTGGACGA
* * *
2951073 TTGCCTTGACTACCATCAGCACA
1 TTGCCTCGACCACCATCGGCACA
2951096 TGGTGAGCCC
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
89 5 0.05
90 87 0.95
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.22
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATAGGCCCTGCTGCAGGCAGTTGCATCGAACACCATCGGC
ACATGTCGACCCGTGGTGTGGACGA
Found at i:2951931 original size:26 final size:26
Alignment explanation
Indices: 2951902--2951954 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2951892 CCGGTCTGAT
* *
2951902 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2951928 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2951954 C
1 C
2951955 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2952287 original size:26 final size:26
Alignment explanation
Indices: 2952258--2952310 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2952248 CCTGTCCGAT
2952258 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2952284 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2952310 C
1 C
2952311 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2953405 original size:45 final size:46
Alignment explanation
Indices: 2953252--2953410 Score: 162
Period size: 45 Copynumber: 3.5 Consensus size: 46
2953242 GTACGGGCAC
* * *
2953252 TTGCCTCGATCGCCATCGGCACA-AGCTAGGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACATAGCTGGGCCCTGGTGTGGGCGG
* *
2953297 TTGCCTCGACCACCATTGGCACA-AGCTGGGCCCTAGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACATAGCTGGGCCCTGGTGTGGGCGG
* * * * * * * *
2953342 TTGCATTGAACACCATCGGCACATA-TTGGGTCGTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACATAGCTGGGCCCTGGTGTGGGCGG
* *
2953387 TTGCCTCGACCACTATCGGTACAT
1 TTGCCTCGACCACCATCGGCACAT
2953411 GCCGAGCCCC
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
45 92 0.99
46 1 0.01
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.23
Consensus pattern (46 bp):
TTGCCTCGACCACCATCGGCACATAGCTGGGCCCTGGTGTGGGCGG
Found at i:2953878 original size:158 final size:158
Alignment explanation
Indices: 2953709--2953995 Score: 409
Period size: 158 Copynumber: 1.8 Consensus size: 158
2953699 CTATGTCCAG
* *
2953709 TTGGGGCTTAGACTAG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGACTGTACGGGC
1 TTGGGGCTTAGAC-AGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACTGTAC-GGC
* ** * *
2953773 -GCTCAGCCGGTCAGGGACGCAGGATGCGTAAGCTGAGGATC-AGCCCGGTCCCCCTCTACGTGC
64 TGCTCAGCCAGTCACAGACGCAGGATGCGCAAGCTGAAGATCGA-CCCGGTCCCCCTCTACGTGC
2953836 TGTTGATCTTGCTACGGGTCCTTCAATCCGA
128 TGTTGATCTTGCTACGGGTCCTTCAATCCGA
* * *
2953867 TTGGGGCTTAGACCGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGCTG
1 TTGGGGCTTAGACAGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACTGTACGGCTG
* * *
2953932 TTCAGCCAGTCACAGAGGCAGGATGCGCAAGCTGAAGATCGACCCGGTCCCCCTCTGCGTGCTG
66 CTCAGCCAGTCACAGACGCAGGATGCGCAAGCTGAAGATCGACCCGGTCCCCCTCTACGTGCTG
2953996 CTGTCTATCT
Statistics
Matches: 113, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
157 4 0.04
158 108 0.96
159 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (158 bp):
TTGGGGCTTAGACAGAGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGACTGTACGGCTG
CTCAGCCAGTCACAGACGCAGGATGCGCAAGCTGAAGATCGACCCGGTCCCCCTCTACGTGCTGT
TGATCTTGCTACGGGTCCTTCAATCCGA
Found at i:2954119 original size:136 final size:136
Alignment explanation
Indices: 2953883--2954134 Score: 357
Period size: 136 Copynumber: 1.9 Consensus size: 136
2953873 CTTAGACCGA
*** *
2953883 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGCTGTTCAGCCAGTCACAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCGGCTGCTCAGCCAGTCACAGA
* * * *
2953948 GGCAGGATGCGCAAGCTGAAGATCGACCCGGTCCCCCTCTGCGTGCTGCTGTCTATCTGATCTTA
66 GGCAGGATGCGCAAGCTCAAGATCGACCCGATCCCCCTCTACGTGATGCTGTCTATCTGATCTTA
2954013 GATTGG
131 GATTGG
* * *
2954019 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCACGCAGG-TGCTCAGCC-GATCAGA
1 GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGC-GGCTGCTCAGCCAG-TCACA
2954082 GAGGCAGGATGCGCAAGC-CAAGGATCGACCCGATCCCCCTCTACGTGATGCTG
64 GAGGCAGGATGCGCAAGCTCAA-GATCGACCCGATCCCCCTCTACGTGATGCTG
2954135 CCCTTTGGTA
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
135 3 0.03
136 97 0.95
137 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (136 bp):
GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCACGCGGCTGCTCAGCCAGTCACAGA
GGCAGGATGCGCAAGCTCAAGATCGACCCGATCCCCCTCTACGTGATGCTGTCTATCTGATCTTA
GATTGG
Found at i:2954780 original size:26 final size:26
Alignment explanation
Indices: 2954751--2954806 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
2954741 CCAGTCCGAT
*
2954751 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2954777 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
2954803 CTTA
1 CTTA
2954807 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2956111 original size:45 final size:45
Alignment explanation
Indices: 2956062--2956194 Score: 131
Period size: 45 Copynumber: 3.0 Consensus size: 45
2956052 GGTTGCCAAT
* * * *
2956062 TGGTATGGGCACTTCCCTCGACCGCCATTGGCAGAAGCTGGGCCC
1 TGGTATGGGCACTTCCCTCGACCACCATCGACACAAGCTGGGCCC
* ** *
2956107 TGGTACGGGCGGTTGCCTCGACCACCATCGACACAAGCTGGGCCC
1 TGGTATGGGCACTTCCCTCGACCACCATCGACACAAGCTGGGCCC
* ** * * * *
2956152 TGGTGTGGGCGGTTGCATCGAACACCATCGACACATGCTGGGC
1 TGGTATGGGCACTTCCCTCGACCACCATCGACACAAGCTGGGC
2956195 TGTGGTGCGG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 75 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (45 bp):
TGGTATGGGCACTTCCCTCGACCACCATCGACACAAGCTGGGCCC
Found at i:2956201 original size:45 final size:45
Alignment explanation
Indices: 2956096--2956194 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 45
2956086 CCATTGGCAG
** * *
2956096 AAGCTGGGCCCTGGTACGGGCGGTTGCCTCGACCACCATCGACAC
1 AAGCTGGGCCCTGGTGTGGGCGGTTGCATCGAACACCATCGACAC
2956141 AAGCTGGGCCCTGGTGTGGGCGGTTGCATCGAACACCATCGACAC
1 AAGCTGGGCCCTGGTGTGGGCGGTTGCATCGAACACCATCGACAC
*
2956186 ATGCTGGGC
1 AAGCTGGGC
2956195 TGTGGTGCGG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
AAGCTGGGCCCTGGTGTGGGCGGTTGCATCGAACACCATCGACAC
Found at i:2957652 original size:13 final size:13
Alignment explanation
Indices: 2957634--2957658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2957624 CAATGGCACA
2957634 TGATGGCACATGG
1 TGATGGCACATGG
2957647 TGATGGCACATG
1 TGATGGCACATG
2957659 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2957827 original size:45 final size:45
Alignment explanation
Indices: 2957709--2957862 Score: 132
Period size: 45 Copynumber: 3.4 Consensus size: 45
2957699 CTTGCCTCGG
* * * * * *
2957709 ACACCATCAGCACAAGCTGGGCCCTAGTGCGGGCGGTTGCCT-AGA
1 ACACCATCGGCACATGCTGGGCCATGGTGCGGGCGATTGTCTCA-A
* * * * * * * *
2957754 CCACCATCGGCATATGATGGTCCCTGGTGGGGGTGCTTG-CATCAA
1 ACACCATCGGCACATGCTGGGCCATGGTGCGGGCGATTGTC-TCAA
*
2957799 ACACCATCGACACATGCTGGGCCATGGTGCGGGCGATTGTCTCAA
1 ACACCATCGGCACATGCTGGGCCATGGTGCGGGCGATTGTCTCAA
*
2957844 CCACCATCGGCACATGCTG
1 ACACCATCGGCACATGCTG
2957863 AGCCCCGATC
Statistics
Matches: 85, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
44 1 0.01
45 82 0.96
46 2 0.02
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (45 bp):
ACACCATCGGCACATGCTGGGCCATGGTGCGGGCGATTGTCTCAA
Found at i:2958956 original size:26 final size:26
Alignment explanation
Indices: 2958904--2958956 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2958894 CCGATTTGAT
* **
2958904 CTTAGATTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCAACATG
*
2958930 CTTAGACTGGGAATGAACTCAATATG
1 CTTAGACTGGGAATGAACTCAACATG
2958956 C
1 C
2958957 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAACATG
Done.