Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 27 of 120
Found at i:2958958 original size:312 final size:312
Alignment explanation
Indices: 2958301--2959148 Score: 841
Period size: 311 Copynumber: 2.7 Consensus size: 312
2958291 GTTCGATCTG
* *
2958301 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCACTGAGTC-G
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT-AG-CAG
* * * * * * *
2958365 ATCGAAAAGGCATAATGCGTAAGCCAGGGATCAGTCCAGTCCCCCTTTGCGTCCTGTCGGTCCTA
64 CT-GGAGAGGCATAATGCGTAAGCCAGGGATCGGTCCAGTCCCCCTCTGCGTGCTGTCGGTCCCA
* * *
2958430 TTGCCACAAGCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCGTACGCCTAAGCCAATC
128 CTGCCACAA--CTC-G---GACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
2958495 CATGAAATGAGTGTGCAGGCACTCAGCTGGTCGAAGAGGTAGAATACGCAAGCCAGGGATCGGCT
187 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAGAATACGCAAGCCAGGGATCGCCT
*** ** * *
2958560 CGATCCCCTCTGGGTGCTACTGTCGGTCCGATCTTAAACTAAGAATGAACTCTATATGCTT
252 CGATCCCCTCTACATGCTACTACCGATCCGATCTTAAACTAAGAATGAACTCTACATGCTT
* * *
2958621 AGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCACTCAGCAGG
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACT-AGCA-G
* * *
2958686 CTGGAGAGGCAT-ATGCGTAAGCCAGGGATCGGTTCAGTCCCCCTCTGCGTGCTGTCGGCCCCGC
64 CTGGAGAGGCATAATGCGTAAGCCAGGGATCGGTCCAGTCCCCCTCTGCGTGCTGTCGGTCCCAC
* * *
2958750 TGCCACAA-TCGG-CTGGGGCTTAGACATGGAATGAACTCCGTATGCTTAAGTCAACCCACAAAA
129 TGCCACAACTCGGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAA
* * * *
2958813 CGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGTAGGATGCGCAAG-CTGAGGATCGACCT-GATC
194 CGAGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAGAATACGCAAGCCAG-GGATCG-CCTCGAT-
** * ** * * ** *
2958876 CCCCTCTACATTTTGCTACCGATTTGATCTTAGATTGGGAATGAACTCTGCATGCTT
256 CCCCTCTACATGCTACTACCGATCCGATCTTAAACTAAGAATGAACTCTACATGCTT
** * *
2958933 AGACTGGGAATGAACTCAATATGCCTAAGTCAACCCACGAAACGAGCGTGC-GG-ACGTTG-AGC
1 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAC-TAGCAGC
* * * * * * *
2958995 AGGAGAGGAATAATGCGCAAGCCAGAGATCGGTCCGGTCCCCCTCTACGAGCTGTCGGTCCCACT
65 TGGAGAGGCATAATGCGTAAGCCAGGGATCGGTCCAGTCCCCCTCTGCGTGCTGTCGGTCCCACT
* * * *
2959060 ACCACAACCCTCGGTCCGGTTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCA
130 GCCACAA--CTCGG-AC---TGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA
* *
2959125 CGAAACGAGCGTACGGGGGCTCAG
189 CGAAACGAGCGTGCGGGCGCTCAG
2959149 TCGGTTGGAG
Statistics
Matches: 437, Mismatches: 76, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
308 11 0.03
309 52 0.12
310 5 0.01
311 93 0.21
312 92 0.21
314 1 0.00
315 1 0.00
316 2 0.00
317 62 0.14
319 53 0.12
320 63 0.14
321 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.20
Consensus pattern (312 bp):
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTAGCAGCT
GGAGAGGCATAATGCGTAAGCCAGGGATCGGTCCAGTCCCCCTCTGCGTGCTGTCGGTCCCACTG
CCACAACTCGGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCGAAGAGGTAGAATACGCAAGCCAGGGATCGCCTCGATCCCCT
CTACATGCTACTACCGATCCGATCTTAAACTAAGAATGAACTCTACATGCTT
Found at i:2959280 original size:26 final size:26
Alignment explanation
Indices: 2959244--2959296 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2959234 CCAGTCTAAT
*
2959244 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCATATG
* *
2959270 CTTAGACTAGGGATGAACTCCATATG
1 CTTAGACTAGGAACGAACTCCATATG
2959296 C
1 C
2959297 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCATATG
Found at i:2960456 original size:26 final size:25
Alignment explanation
Indices: 2960427--2960505 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 25
2960417 TCGATCCAAT
*
2960427 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATAAACTCCGTATG
*
2960453 CTTAGACTGGGGATAAACTCCGCATG
1 CTTAGACT-GGGATAAACTCCGTATG
*
2960479 CTTAGACTGAGGATAAACTCTGTATG
1 CTTAGACTG-GGATAAACTCCGTATG
2960505 C
1 C
2960506 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
25 1 0.02
26 43 0.91
27 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGATAAACTCCGTATG
Found at i:2962093 original size:159 final size:158
Alignment explanation
Indices: 2961879--2962190 Score: 392
Period size: 159 Copynumber: 2.0 Consensus size: 158
2961869 TACTACGGTT
* * *
2961879 CTCTCGATCCGATTGGGGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACA
1 CTCTCGATCCGATTGGGGCTTAGACCAGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACA
* * * * * * * *
2961944 AGCGTCCGGGCGTTGAGTCGGCTAGAGAGGCATAATGCGCAAGCCAACGATCGGCCCGATCCCCC
66 AGCGACCGGGCGCTCAGCCAGCTAGAGAGGAAGAATGCACAAGCCAACGATCGGCCCGATCCCCC
**
2962009 TCTACGTGCTACCGGTCTTGCTGCCACAA
131 T-TACGTGCTACCAATCTTGCTGCCACAA
** *
2962038 CTCTCGATTTGATTGGGGCTTAGA-CATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAAT
1 CTCTCGATCCGATTGGGGCTTAGACCA-GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAAC
* * * * *
2962102 GAGCGAGCGGGTGCTCAGCCAGCTAGAGAGGAAGAATGCACAAGCCGAGGATCGGCCCGATCCCC
65 AAGCGACCGGGCGCTCAGCCAGCTAGAGAGGAAGAATGCACAAGCCAACGATCGGCCCGATCCCC
* *
2962167 CTTGCGTGCTGCCAATCTTGCTGC
130 CTTACGTGCTACCAATCTTGCTGC
2962191 TGGTCCTGCT
Statistics
Matches: 129, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 20 0.16
159 109 0.84
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
CTCTCGATCCGATTGGGGCTTAGACCAGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACA
AGCGACCGGGCGCTCAGCCAGCTAGAGAGGAAGAATGCACAAGCCAACGATCGGCCCGATCCCCC
TTACGTGCTACCAATCTTGCTGCCACAA
Found at i:2962267 original size:26 final size:26
Alignment explanation
Indices: 2962226--2962278 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2962216 CCAGTTCAAT
2962226 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
2962252 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGCATG
2962278 C
1 C
2962279 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:2963735 original size:159 final size:159
Alignment explanation
Indices: 2963483--2963795 Score: 378
Period size: 159 Copynumber: 2.0 Consensus size: 159
2963473 TACTACGGTT
* * *
2963483 CTCTCGATCCGATTGGGGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACA
1 CTCTCGATCCGATTGGGGCTTAGACCAGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACA
* * * * * * * *
2963548 AGCGTCCGGGCGTTGAGTCGGCTAGAGAGGCATAATGCGCAAGCCAACGATC-GGCCCGATCCCC
66 AGCGACCGGGCGCTCAGCCAGCTAGAGAGGAAGAATGCACAAGCCAACGATCGGGCCCGATCCCC
**
2963612 CTCTACGTGCTACCGGTCTTGCTGCCACAA
131 CT-TACGTGCTACCAATCTTGCTGCCACAA
** *
2963642 CTCTCGATTTGATTGGGGCTTAGA-CATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAAT
1 CTCTCGATCCGATTGGGGCTTAGACCA-GGAATGAACTCCGTATGCCAAAGCCAACCCACGAAAC
* * * * * *
2963706 GAGCGAGCGGGTGCTCAGCCAGCTGGAGAGGAAGAATGCACAAGCCGAGGATCGGGCCCGATCCC
65 AAGCGACCGGGCGCTCAGCCAGCTAGAGAGGAAGAATGCACAAGCCAACGATCGGGCCCGATCCC
* *
2963771 CCTTGCGTGCTGCCAATCTTGCTGC
130 CCTTACGTGCTACCAATCTTGCTGC
2963796 TGGTCCTGCT
Statistics
Matches: 128, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 2 0.02
159 112 0.88
160 14 0.11
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.19
Consensus pattern (159 bp):
CTCTCGATCCGATTGGGGCTTAGACCAGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACA
AGCGACCGGGCGCTCAGCCAGCTAGAGAGGAAGAATGCACAAGCCAACGATCGGGCCCGATCCCC
CTTACGTGCTACCAATCTTGCTGCCACAA
Found at i:2963872 original size:26 final size:26
Alignment explanation
Indices: 2963831--2963883 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2963821 CCAGTTCAAT
2963831 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
2963857 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGCATG
2963883 C
1 C
2963884 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:2964748 original size:45 final size:45
Alignment explanation
Indices: 2964616--2964768 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
2964606 GGCACATGCA
* * * * * **
2964616 TCGACCATCATCGGCACAGGCT-GCCCTTTGGTATGGGCACTTGCC
1 TCGACCACCATCGGCACAAGATGGCCC-CTGGTAAGGGCGGTTGCC
* * * * * *
2964661 TTGACCGCCATCGGCACAAGCTGGGCCTTGGTAAGGGTGGTTGCC
1 TCGACCACCATCGGCACAAGATGGCCCCTGGTAAGGGCGGTTGCC
** *
2964706 TCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGGTTGCA
1 TCGACCACCATCGGCACAAGATGGCCCCTGGTAAGGGCGGTTGCC
*
2964751 TCGAACACCATCGGCACA
1 TCGACCACCATCGGCACA
2964769 TTCTTGGCTG
Statistics
Matches: 88, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
45 85 0.97
46 3 0.03
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGATGGCCCCTGGTAAGGGCGGTTGCC
Found at i:2965918 original size:13 final size:13
Alignment explanation
Indices: 2965900--2965924 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2965890 CAGTGGCACA
2965900 TGATGGCACATGG
1 TGATGGCACATGG
2965913 TGATGGCACATG
1 TGATGGCACATG
2965925 CATCGACCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2966006 original size:45 final size:45
Alignment explanation
Indices: 2965917--2966079 Score: 161
Period size: 45 Copynumber: 3.6 Consensus size: 45
2965907 ACATGGTGAT
* * ** *
2965917 GGCACATGCATCGACCACCATCGGCACAAGCTGCCCTTTGGTACG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCTCTGGTACG
* *
2965962 GGCACTTGCCTCGACCACCATCGGCATAAGCTGGGCTCTAGTACG
1 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCTCTGGTACG
* * *
2966007 GGCGA-TCGCCTC-AGCCACCATCGGCACATGCTGGG-TCATGGTGCG
1 GGC-ACTTGCCTCGA-CCACCATCGGCACAAGCTGGGCTC-TGGTACG
***
2966052 GGTGGTTGCCTCGACCACCATCGGCACA
1 GGCACTTGCCTCGACCACCATCGGCACA
2966080 TGCCGAGCCC
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
44 3 0.03
45 93 0.95
46 2 0.02
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.18
Consensus pattern (45 bp):
GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCTCTGGTACG
Found at i:2967480 original size:45 final size:45
Alignment explanation
Indices: 2967431--2967522 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
2967421 GACTTCGATT
* *
2967431 GGCACAAGG-TCGACCCTGGTACGAGCGGTTGCCTTGACCACCATC
1 GGCAC-AGGATCGACCCTGGTACGAGCGGTTGCATCGACCACCATC
* * * * *
2967476 GGCACAGGATGGCCCCTGGTATGGGCGGTTGCATCGACCACTATC
1 GGCACAGGATCGACCCTGGTACGAGCGGTTGCATCGACCACCATC
2967521 GG
1 GG
2967523 TAAATGCTAG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 3 0.08
45 36 0.92
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (45 bp):
GGCACAGGATCGACCCTGGTACGAGCGGTTGCATCGACCACCATC
Found at i:2968190 original size:26 final size:26
Alignment explanation
Indices: 2968161--2968213 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2968151 TCGGTCCAAT
*
2968161 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
2968187 CTTAGACTGAGATTGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
2968213 C
1 C
2968214 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:2968263 original size:173 final size:173
Alignment explanation
Indices: 2967839--2968263 Score: 460
Period size: 173 Copynumber: 2.4 Consensus size: 173
2967829 TCTGATTAGG
* * * * *
2967839 GCTTAGACCAG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCTCTCA
1 GCTTAGA-CAGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGA
* * ** * * *
2967903 GTCGGCTGGAGAGGCAGGATGCGCAAGTCACAGATCGACACGGTCCCCCTTTGCGTGCTGCTGTC
65 G-CTGCTGGAGAGGCAGAATGCGCAAGTCACAGATCGACACGGTCCCCCACTACGTGCTACTGGC
* * ** *
2967968 GATCCTGCTATCGGTCTGATCTCAGACTGCAAATGAACTCTATAT
129 AATCCCGCTATCGGTCCAATCTCAGACTGCAAATGAACTCCATAT
* * * *
2968013 GCTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGTGGGCACTGAG
1 GCTTAGACAGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
* **** *
2968078 CTGACAGGAGAGGC-GTAATGC-CAAGTTGGGGATCGACCCGGTCCCCCACTACGTGCTACTGGC
66 CTG-CTGGAGAGGCAG-AATGCGCAAGTCACAGATCGACACGGTCCCCCACTACGTGCTACTGGC
* * **
2968141 AATCCCGCTGTCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
129 AATCCCGCTATCGGTCCAATCTCAGACTGCAAATGAACTCCATAT
* * * * *
2968186 GCTTAGACTGAGATTGAACTCCATATGCCTAAGTCAACCCCCGAAATGAGCGTGCGGGCGCTGAG
1 GCTTAGACAGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
2968251 CTAGCTGGAGAGG
66 CT-GCTGGAGAGG
2968264 TATAATGCAC
Statistics
Matches: 207, Mismatches: 40, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
173 140 0.68
174 67 0.32
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (173 bp):
GCTTAGACAGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAG
CTGCTGGAGAGGCAGAATGCGCAAGTCACAGATCGACACGGTCCCCCACTACGTGCTACTGGCAA
TCCCGCTATCGGTCCAATCTCAGACTGCAAATGAACTCCATAT
Found at i:2968536 original size:26 final size:26
Alignment explanation
Indices: 2968498--2968548 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2968488 TGGTCCGATC
* * *
2968498 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACCGAGAATGAACTCCGTATGT
2968524 TTAGACCGAGAATGAACTCCGTATG
1 TTAGACCGAGAATGAACTCCGTATG
2968549 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACCGAGAATGAACTCCGTATGT
Found at i:2969937 original size:13 final size:13
Alignment explanation
Indices: 2969919--2969943 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2969909 TAATGGCACA
2969919 TGATGGCACATGG
1 TGATGGCACATGG
2969932 TGATGGCACATG
1 TGATGGCACATG
2969944 CATCAACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:2970055 original size:45 final size:44
Alignment explanation
Indices: 2969986--2970138 Score: 144
Period size: 45 Copynumber: 3.4 Consensus size: 44
2969976 TTACGGGCAC
* * *
2969986 TTGCCTCGACCGCTATCGGCACAAGCTGGGCCCTGGTGCGGACGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGC-GACGG
** * ** * * *
2970031 TCACCTCGACCACCATTGGTACAAGATGGCCCCTGGTACGAGCGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGA-CGG
* * * *
2970076 TTGCATCGAACACCATCGACACATGCTGGGCCGTGGTGCAGACGG
1 TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGC-GACGG
2970121 TTGCCTCGACCACCATCG
1 TTGCCTCGACCACCATCG
2970139 GCACGTGTTG
Statistics
Matches: 83, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
44 2 0.02
45 79 0.95
46 2 0.02
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.18
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGACACAAGCTGGGCCCTGGTGCGACGG
Found at i:2970676 original size:136 final size:135
Alignment explanation
Indices: 2970450--2970694 Score: 319
Period size: 136 Copynumber: 1.8 Consensus size: 135
2970440 CCTGTTAGGG
* * *
2970450 CTTAGACCAAGAATGAACTCGTATACTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC
1 CTTAGACCAAGAATGAACTCGTATACCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCC
* * * * * *
2970515 GATCGGAGAGGTAGGACGTGCAAGCCAAGGATCGGCCCGATCCCCCTCTGTATGCTACTGTCGAT
66 GATCGAAGAGGCAGAACGCGCAAGCCAAGGATCAGCCCCATCCCCCTCTGTATGCTACTGTCGAT
2970580 CAGAT
131 CAGAT
** * *
2970585 CTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTGAGC
1 CTTAGACCAAGAATGAACTC-GTATACCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
* * * * *
2970650 CGATCGAAGATGCATAATGCGTAAGCCGAGGATCAGCCCCATCCC
65 CGATCGAAGAGGCAGAACGCGCAAGCCAAGGATCAGCCCCATCCC
2970695 TTTTTGCGTG
Statistics
Matches: 91, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
135 18 0.20
136 73 0.80
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (135 bp):
CTTAGACCAAGAATGAACTCGTATACCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCC
GATCGAAGAGGCAGAACGCGCAAGCCAAGGATCAGCCCCATCCCCCTCTGTATGCTACTGTCGAT
CAGAT
Found at i:2973854 original size:26 final size:27
Alignment explanation
Indices: 2973808--2973859 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
2973798 GGTCCGATCT
2973808 TAGACTAGGGAATGAACTCCGTATGCA
1 TAGACTAGGGAATGAACTCCGTATGCA
*
2973835 TAGACT-GGGGATGAACTCCGTATGC
1 TAGACTAGGGAATGAACTCCGTATGC
2973860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (27 bp):
TAGACTAGGGAATGAACTCCGTATGCA
Found at i:2973985 original size:197 final size:197
Alignment explanation
Indices: 2973648--2974010 Score: 496
Period size: 197 Copynumber: 1.8 Consensus size: 197
2973638 TAGACATGGA
* * * * *
2973648 ATGAACTCCGTATGCCTAAGCCAATCCACGAAACGAGCGTGTGGGTGCTCAGCAGGCTGGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCTAGAGAGG
* * * * *
2973713 TAGAATGCGCAAGCCGAGGATCAGCCTGATCCCCCCGGCATGCTGCCGATCTTGCTGCAGGTCCT
66 CAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGGCATGCTACCGATCCTGCTACAGGTCCT
* *
2973778 ACTATCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGGAATGAACTCCGTATGCATAGACTGG
131 ACTATCGCAACCCTCGATCCGATCCGATCTTAGACTAGGGAATGAACTCCGTATGCATAGACTGG
2973843 GG
196 GG
* * *
2973845 ATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCTAGAGAGG
1 ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCTAGAGAGG
* * * * **
2973910 CAGGATGCGCAAGCTGAGGATC-GACCCGA-CCCCCTCTGCGTGCTACCGATCCTGCTATGGGTC
66 CAGAATGCGCAAGCCGAGGATCAG-CCCGATCCCCC-CGGCATGCTACCGATCCTGCTACAGGTC
*
2973973 CTACTGTCGCAACCCTCGATCCGATCCGATCTTAGACT
129 CTACTATCGCAACCCTCGATCCGATCCGATCTTAGACT
2974011 GGAGTGCACT
Statistics
Matches: 142, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
196 6 0.04
197 136 0.96
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.20
Consensus pattern (197 bp):
ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACAGGCTAGAGAGG
CAGAATGCGCAAGCCGAGGATCAGCCCGATCCCCCCGGCATGCTACCGATCCTGCTACAGGTCCT
ACTATCGCAACCCTCGATCCGATCCGATCTTAGACTAGGGAATGAACTCCGTATGCATAGACTGG
GG
Found at i:2981508 original size:26 final size:26
Alignment explanation
Indices: 2981479--2981532 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
2981469 CCGATTCAAT
*
2981479 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2981505 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2981531 CT
1 CT
2981533 ATGTCAACCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2983333 original size:26 final size:26
Alignment explanation
Indices: 2983304--2983356 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
2983294 CTGGTCCGAT
2983304 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
2983330 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
2983356 C
1 C
2983357 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:2984351 original size:46 final size:45
Alignment explanation
Indices: 2984301--2984456 Score: 134
Period size: 45 Copynumber: 3.4 Consensus size: 45
2984291 CGGCCACTTG
* * *
2984301 CCTCGACCGCCATCGGCACAAGCTGGGCCCTTGGTGCAGACGGTTT
1 CCTCGACCACCATCGGCACAAGCT-GGCCCTTGGTGCAGGCGGTTA
* * * ** * *
2984347 CCTCGACCACTATCGGTACAAGATGGCCCTTGGTGTGGGTGGTTG
1 CCTCGACCACCATCGGCACAAGCTGGCCCTTGGTGCAGGCGGTTA
* * * * *
2984392 CATCGAACACCATCGGCACATGCTAGG-CCGTGGTGGAGGCGGTTA
1 CCTCGACCACCATCGGCACAAGCT-GGCCCTTGGTGCAGGCGGTTA
* *
2984437 CCTCGATCGCCATCGGCACA
1 CCTCGACCACCATCGGCACA
2984457 TGCCAAGCCT
Statistics
Matches: 86, Mismatches: 23, Indels: 3
0.77 0.21 0.03
Matches are distributed among these distances:
45 64 0.74
46 22 0.26
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.21
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGCTGGCCCTTGGTGCAGGCGGTTA
Found at i:2990845 original size:26 final size:26
Alignment explanation
Indices: 2990809--2990861 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2990799 CAGGTCTGAT
*
2990809 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2990835 CTTAGACTGGGAATGCACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2990861 C
1 C
2990862 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2991235 original size:27 final size:26
Alignment explanation
Indices: 2991182--2991235 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
2991172 TGATCTTATA
* *
2991182 CTGGGAATGAACTCCGTATGCTTAGT
1 CTGGGAATGAACTCCATATGCTAAGT
*
2991208 CTGGGGATGAACTCCATATGCCTAAGT
1 CTGGGAATGAACTCCATATG-CTAAGT
2991235 C
1 C
2991236 AACCCACGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (26 bp):
CTGGGAATGAACTCCATATGCTAAGT
Found at i:2992250 original size:45 final size:42
Alignment explanation
Indices: 2992199--2992370 Score: 139
Period size: 45 Copynumber: 3.9 Consensus size: 42
2992189 CAAGCTGGGC
* *
2992199 CCTGGTGCGGGCGGTTACCTCGATCACCATCGGCACATGCCG
1 CCTGGTGCGGGCGATTGCCTCGATCACCATCGGCACATGCCG
* * *
2992241 ACCTTTGGTGCTGGTGATTGCCTCGATCACCATCGACACAATGGCC-
1 -CC--TGGTGCGGGCGATTGCCTCGATCACCATCGGCAC-AT-GCCG
** * * * * *
2992287 CCTGGTGCGAACCATTGCATCGAACACCATCGGTACATGCTGGG
1 CCTGGTGCGGGCGATTGCCTCGATCACCATCGGCACATGC--CG
* *
2992331 CCATGGTGCGGGCGGTTGCCTCGACCACCATCGGCACATG
1 CC-TGGTGCGGGCGATTGCCTCGATCACCATCGGCACATG
2992371 TCGAGCCCCG
Statistics
Matches: 99, Mismatches: 22, Indels: 14
0.73 0.16 0.10
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 27 0.27
44 2 0.02
45 61 0.62
46 2 0.02
47 3 0.03
ACGTcount: A:0.18, C:0.33, G:0.28, T:0.21
Consensus pattern (42 bp):
CCTGGTGCGGGCGATTGCCTCGATCACCATCGGCACATGCCG
Found at i:2993046 original size:26 final size:26
Alignment explanation
Indices: 2993017--2993069 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2993007 CTGGTTCGAT
* *
2993017 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACCCTGTATG
*
2993043 CTTAGACAGGGGATGAACCCTGTATG
1 CTTAGACAGGGAATGAACCCTGTATG
2993069 C
1 C
2993070 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACCCTGTATG
Found at i:2993782 original size:45 final size:45
Alignment explanation
Indices: 2993730--2993880 Score: 185
Period size: 45 Copynumber: 3.4 Consensus size: 45
2993720 GTACGGGCAC
* * *
2993730 TTGCCTCGACTACCATCGGCACAGGCTGGGCCCTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * * *
2993775 TTACCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
* * * *
2993820 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
*
2993865 TTGCTTCGACCACCAT
1 TTGCCTCGACCACCAT
2993881 TGTCACTTTT
Statistics
Matches: 87, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 87 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
Found at i:2994400 original size:26 final size:26
Alignment explanation
Indices: 2994364--2994416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2994354 TTGGTCTGAT
2994364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
2994390 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2994416 C
1 C
2994417 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2994771 original size:26 final size:26
Alignment explanation
Indices: 2994721--2994773 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2994711 CCAGTTTGAT
**
2994721 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
2994747 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2994773 C
1 C
2994774 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2994864 original size:357 final size:353
Alignment explanation
Indices: 2994057--2994869 Score: 896
Period size: 354 Copynumber: 2.3 Consensus size: 353
2994047 AATGCACTAT
* * * *
2994057 GTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCACTTAGCCGGCCGGAGAGCCAGAATACA
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG-CGGCCGGAGAGACAGAATGCA
* * * * * * * * *
2994122 CAAGTTAAGGATTGGCCCGGTCCCACTCTACATGTTGTTGGTCCGGTTGCCACAACCCTCGGTAC
65 CAAGCTAAGGATCGACCCGGTCCCACTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTAC
* * * ** *
2994187 AACTGGGGCTTAGACAAGGAATGAACTCAGTATGCCTAAGCTAACCCATGAAACGAGCGTGTGGG
130 AACTGGGGCTTACACAAGGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGG
* * *
2994252 CACTCAACCGATCGGAGAGTCAGAATGCGTAAGTCGAGATCAGCCCGGTCCCTCCTGCGTGCTAC
195 CACTCAACCGACCGGAGAGGCAGAATGCGTAAGCCGAGATCAGCCCGGTCCCTCCTGCGTGCTAC
* * * * ***
2994317 CGATCCTGCTGCTGGTCTTGCTACCGCAATCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAAC
260 CGATCCTGCTCCCGGTCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAAC
*
2994382 TCCGTATGCTTAGATTGGGGATGAACTCC
325 TCCGTATGCTTAGACTGGGGATGAACTCC
* * * * *
2994411 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCTGGCCGGAGAGGC-GTAATGC
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC-GGCCGGAGAGACAG-AATGC
* * * * * *
2994475 GCAAGCCATGGATC-AGCCCGATCCCTCTCTGCGTGCTGTCGGTCCCGCTGCCATAACCCTCGGT
64 ACAAGCTAAGGATCGA-CCCGGTCCCACTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGT
* ** * * * *
2994539 CCGGCTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGTGTGCG
128 ACAACTGGGGCTTACACAAGGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGAGCGTGCG
* * * * *
2994604 GGCACTCAGCC-AGCCGGAGAGGCAGGATGCGTAAGCCGGGGATCGGCTCGGTCCC-CCATGCGT
193 GGCACTCAACCGA-CCGGAGAGGCAGAATGCGTAAGCC-GAGATCAGCCCGGTCCCTCC-TGCGT
* * * * *
2994667 GTTATCGATCCTGCTACCCCGGTCCTGCTGCCGTAACCCTCGGTCCAGTTTGATCTTAGACTGGG
255 GCTACCGATCCTGCT--CCCGGTCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGG
**
2994732 AATGAACTTTGTATGCTTAGACTGGGGATGAACTCC
318 AATGAACTCCGTATGCTTAGACTGGGGATGAACTCC
* ** * *
2994768 GTATGCCTAAGTCAACCCACGAATCGAGCGTACGGGCACTCAGTCGGCTAGAGAGACAGGATGTA
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAG-CGGCCGGAGAGACAGAATGCA
* * *
2994833 CAAGCTGAGGATCGACTCGGTCCCCCTCTGCGTGCTG
65 CAAGCTAAGGATCGACCCGGTCCCACTCTGCGTGCTG
2994870 CTACCGATCC
Statistics
Matches: 373, Mismatches: 75, Indels: 19
0.80 0.16 0.04
Matches are distributed among these distances:
353 3 0.01
354 185 0.50
355 32 0.09
357 150 0.40
358 3 0.01
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (353 bp):
GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCGGCCGGAGAGACAGAATGCAC
AAGCTAAGGATCGACCCGGTCCCACTCTGCGTGCTGTCGGTCCCGCTGCCACAACCCTCGGTACA
ACTGGGGCTTACACAAGGAATGAACTCACTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGC
ACTCAACCGACCGGAGAGGCAGAATGCGTAAGCCGAGATCAGCCCGGTCCCTCCTGCGTGCTACC
GATCCTGCTCCCGGTCCTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGGATGAACTCC
Found at i:2994931 original size:26 final size:26
Alignment explanation
Indices: 2994895--2994945 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
2994885 CAGTCCGATC
2994895 TTAGACTGGGAATGAACTCCATATGT
1 TTAGACTGGGAATGAACTCCATATGT
* *
2994921 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
2994946 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGT
Found at i:2996060 original size:170 final size:171
Alignment explanation
Indices: 2995657--2996061 Score: 399
Period size: 170 Copynumber: 2.4 Consensus size: 171
2995647 ATGAACTTCG
* * * * * * *
2995657 TATGTCTAAGCCAACCCATGAAACGAGTGTGCGGGCTCTCAGCCGGTCGGAGAGACAGAATGCGC
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGCCGGACGGAGAGACAGGATGCGC
* * * *
2995722 AAGCCGGGGATCGACTCGATCCCTCCCTGCATGCTGTCAAACCTGCTGCTGGTCCTGCTGTCGCA
66 AAGCCGGGGATCAACTCGATCCCTCCCTACATGCTGTCAAACCTACTGCTGGTCCTGCTATCGCA
* * * * * *
2995787 ACCCTTGGTCTGATACGATCTTAGACTGGGGATGAACCCCG
131 ACCCTCGATCTGATACGATCATAGACTGGGGACGAACCACA
* * * * * ** **
2995828 TATGCCTAAGTCAACCCATGAAATGAGCATTCGGGCA-TTCAGTCAGATAGAGAGGTAGGATGCG
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTT-AGCCGGACGGAGAGACAGGATGCG
* * * * *
2995892 CAAGCTGGGGATCAACTCGGTCCC-CTCTACATGCTGTCGATCCTACTG-TGAGTCCTGCTATCG
65 CAAGCCGGGGATCAACTCGATCCCTCCCTACATGCTGTCAAACCTACTGCTG-GTCCTGCTATCG
* * *
2995955 CAACCCTCGATCT-AGT-CTGATCATAGA-TTGGGAGCGCACTACA
129 CAACCCTCGATCTGA-TAC-GATCATAGACTGGGGA-CGAACCACA
* *
2995998 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTTAGCCGGCCGGAGAGACAGGATGCG
1 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGCCGGACGGAGAGACAGGATGCG
2996062 TAAGTCATGG
Statistics
Matches: 183, Mismatches: 45, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
169 9 0.05
170 105 0.57
171 69 0.38
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (171 bp):
TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTTAGCCGGACGGAGAGACAGGATGCGC
AAGCCGGGGATCAACTCGATCCCTCCCTACATGCTGTCAAACCTACTGCTGGTCCTGCTATCGCA
ACCCTCGATCTGATACGATCATAGACTGGGGACGAACCACA
Found at i:2996856 original size:45 final size:45
Alignment explanation
Indices: 2996762--2996857 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 45
2996752 AGGCTACCCT
* * *
2996762 TTGGTACGGGCACTTGCCTCAACCACCATCGGCACAAGCTGGGCC
1 TTGGTGCGGGCACTTACCTCAACCACCATCGGCACAAGATGGGCC
* * *
2996807 TTGGTGCGGGCAGTTACCTCGACCACCATCGGTACAAGAT-GGCC
1 TTGGTGCGGGCACTTACCTCAACCACCATCGGCACAAGATGGGCC
2996851 ATTGGTG
1 -TTGGTG
2996858 TGAGGAGTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
44 4 0.09
45 40 0.91
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (45 bp):
TTGGTGCGGGCACTTACCTCAACCACCATCGGCACAAGATGGGCC
Found at i:2996856 original size:90 final size:90
Alignment explanation
Indices: 2996762--2996926 Score: 199
Period size: 90 Copynumber: 1.8 Consensus size: 90
2996752 AGGCTACCCT
* * *
2996762 TTGGTACG-GGCACTTGCCTC-AACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCAGTTACC
1 TTGGTACGAGG-ACTTGCATCGAA-CACCATCGGCACAAGCTGGGCCGTGGTGCGGACAGTTACC
2996825 TCGACCACCATCGGTACAAGATGGCCA
64 TCGACCACCATCGGTACAAGATGGCCA
** * * * * * *
2996852 TTGGTGTGAGGAGTTGCATCGAACACCATTGGCACATGCTGGGCCGTGGTGTGGACGGTTGCCTC
1 TTGGTACGAGGACTTGCATCGAACACCATCGGCACAAGCTGGGCCGTGGTGCGGACAGTTACCTC
2996917 GACCACCATC
66 GACCACCATC
2996927 AGCACATGCT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
90 58 0.94
91 4 0.06
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.21
Consensus pattern (90 bp):
TTGGTACGAGGACTTGCATCGAACACCATCGGCACAAGCTGGGCCGTGGTGCGGACAGTTACCTC
GACCACCATCGGTACAAGATGGCCA
Found at i:2996879 original size:45 final size:45
Alignment explanation
Indices: 2996785--2996902 Score: 114
Period size: 45 Copynumber: 2.6 Consensus size: 45
2996775 TTGCCTCAAC
* * *
2996785 CACCATCGGCACAAGCTGGGCCTTGGTGCGGGCAGTTACCTCGAC
1 CACCATCGGCACAAGATGGGCCTTGGTGCGGGCAGTTACATCGAA
* * *
2996830 CACCATCGGTACAAGAT-GGCCATTGGTGTGAGG-AGTTGCATCGAA
1 CACCATCGGCACAAGATGGGCC-TTGGTGCG-GGCAGTTACATCGAA
* * * *
2996875 CACCATTGGCACATGCTGGGCCGTGGTG
1 CACCATCGGCACAAGATGGGCCTTGGTG
2996903 TGGACGGTTG
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
44 4 0.07
45 49 0.83
46 6 0.10
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.20
Consensus pattern (45 bp):
CACCATCGGCACAAGATGGGCCTTGGTGCGGGCAGTTACATCGAA
Found at i:2997772 original size:26 final size:26
Alignment explanation
Indices: 2997743--2997793 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
2997733 CCGATCCGAT
*
2997743 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
2997769 CTTAGACTGGGGATGAACTCTGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
2997794 TTCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:2998920 original size:90 final size:90
Alignment explanation
Indices: 2998736--2998938 Score: 228
Period size: 90 Copynumber: 2.3 Consensus size: 90
2998726 GTACGGGTAC
* * * * * *
2998736 TTGCCTCGACCGCCATCGACACAAGCTGGGCCCTGGTGCGGGCAGTTGCCTCGATCACCATCGAC
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGAGCAGTTGCATCGAACACCATCGAC
** *
2998801 ACATGCTGGCCCTTAGTGTGAGCGA
66 ACATGCTGGCCAGTAGTGCGAGCGA
* ** *
2998826 TTGCCTCGACCACCATCGGCACAAGAT-GGCCCTTGGTGCGAGCGGTTGCATCGAACACTGTCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCC-TGGTGCGAGCAGTTGCATCGAACACCATCGA
* * * *
2998890 CACATGCTGGGCAGTGGTGCGGGCGG
65 CACATGCTGGCCAGTAGTGCGAGCGA
*
2998916 TTGCCTCAACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
2998939 TGTCGAGCCC
Statistics
Matches: 94, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
89 5 0.05
90 89 0.95
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGAGCAGTTGCATCGAACACCATCGAC
ACATGCTGGCCAGTAGTGCGAGCGA
Found at i:2998939 original size:45 final size:45
Alignment explanation
Indices: 2998736--2998940 Score: 205
Period size: 45 Copynumber: 4.6 Consensus size: 45
2998726 GTACGGGTAC
* * * * *
2998736 TTGCCTCGACCGCCATCGACACAAGCTGGGCCC-TGGTGCGGGCAG
1 TTGCCTCGACCACCATCGGCACATGCT-GGCCCTTGGTGCGAGCGG
* * * * *
2998781 TTGCCTCGATCACCATCGACACATGCTGGCCCTTAGTGTGAGCGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCGAGCGG
* *
2998826 TTGCCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGAGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCGAGCGG
* * ** * ** *
2998871 TTGCATCGAACACTGTCGGCACATGCTGGGCAGTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCGAGCGG
*
2998916 TTGCCTCAACCACCATCGGCACATG
1 TTGCCTCGACCACCATCGGCACATG
2998941 TCGAGCCCCG
Statistics
Matches: 129, Mismatches: 30, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
44 5 0.04
45 124 0.96
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCTTGGTGCGAGCGG
Found at i:2999789 original size:26 final size:26
Alignment explanation
Indices: 2999760--2999815 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
2999750 CCAGTCTGAT
*
2999760 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
* *
2999786 CTTAGACCGGGGATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCATATG
2999812 CTTA
1 CTTA
2999816 AGTCAACCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:3001189 original size:26 final size:27
Alignment explanation
Indices: 3001148--3001208 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 27
3001138 GTGCTGCTGC
3001148 CTGTATGATCTTAGACTGAGAATGAACT
1 CTGTATGA-CTTAGACTGAGAATGAACT
3001176 CTGTATG-CTTAGACTGAGAATGAACT
1 CTGTATGACTTAGACTGAGAATGAACT
*
3001202 CCGTATG
1 CTGTATG
3001209 GCTAAGTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
26 25 0.78
28 7 0.22
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGTATGACTTAGACTGAGAATGAACT
Found at i:3002555 original size:45 final size:45
Alignment explanation
Indices: 3002470--3002627 Score: 140
Period size: 45 Copynumber: 3.5 Consensus size: 45
3002460 GTACGGGCAC
* * *** *
3002470 TTGCCTCGACCACCATCGACAAAAGTTGGGTTCTAGTGCGGGCGG
1 TTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTGCGGGCGA
*
3002515 TTGCCTCGACCACCATCGGCACAAGATGGCCCCT-GATGCGGGCGA
1 TTGCCTCGACCACCATCGACACAAGATGGCCCCTAG-TGCGGGCGA
* * * * * * *
3002560 TTGCATCGAACACCATCGACACATGCTAGG-CCATGGTGTGGGCGA
1 TTGCCTCGACCACCATCGACACAAGAT-GGCCCCTAGTGCGGGCGA
* *
3002605 TTACCTCGACCAACATCGACACA
1 TTGCCTCGACCACCATCGACACA
3002628 TGCCAAGCCC
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
44 1 0.01
45 88 0.96
46 3 0.03
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGATGGCCCCTAGTGCGGGCGA
Found at i:3003472 original size:26 final size:26
Alignment explanation
Indices: 3003436--3003488 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3003426 CTGATCCAAT
*
3003436 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
3003462 CTTAGACTAGGGATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
3003488 C
1 C
3003489 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:3004950 original size:45 final size:45
Alignment explanation
Indices: 3004901--3005005 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 45
3004891 TGGGTACTTA
* * * *
3004901 CCTCGATCGCCATCGACACAAGCTGGGCCCTGGTGCAGG-CGGTTG
1 CCTCGACCACCATCGACACAAGATGGCCCCTGGTGC-GGACGGTTG
* *
3004946 CCTCGACCACCATTGATACAAGATGGCCCCTGGTGCGGACGGTTG
1 CCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGACGGTTG
3004991 CCTCGACCACCATCG
1 CCTCGACCACCATCG
3005006 GTACATGCCG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
44 2 0.04
45 50 0.96
ACGTcount: A:0.18, C:0.35, G:0.29, T:0.18
Consensus pattern (45 bp):
CCTCGACCACCATCGACACAAGATGGCCCCTGGTGCGGACGGTTG
Found at i:3005823 original size:26 final size:26
Alignment explanation
Indices: 3005782--3005834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3005772 CTAGTCCGAT
3005782 CTTAGACAGGGAATGAACTCCATATG
1 CTTAGACAGGGAATGAACTCCATATG
* * *
3005808 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
3005834 C
1 C
3005835 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:3006933 original size:45 final size:45
Alignment explanation
Indices: 3006819--3006941 Score: 140
Period size: 45 Copynumber: 2.7 Consensus size: 45
3006809 AGCACGGGCA
* *** *
3006819 GTTGCCTCGACCACCATCGACACAAAATG-GCCCCTGGTGCAGGCG
1 GTTGCCTCGACCACCATCGGCACATGCTGAG-CCATGGTGCAGGCG
* * * *
3006864 GTTGCATCGAACACCATCGGCACATGCTGAGCCATGGTGCGGGGG
1 GTTGCCTCGACCACCATCGGCACATGCTGAGCCATGGTGCAGGCG
*
3006909 GTTGCCTCGACCACCATCGGCACATGCCGAGCC
1 GTTGCCTCGACCACCATCGGCACATGCTGAGCC
3006942 CCGATCAACC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 64 0.98
46 1 0.02
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (45 bp):
GTTGCCTCGACCACCATCGGCACATGCTGAGCCATGGTGCAGGCG
Found at i:3007937 original size:170 final size:171
Alignment explanation
Indices: 3007559--3008004 Score: 455
Period size: 170 Copynumber: 2.6 Consensus size: 171
3007549 CCGGCTGGGG
* *
3007559 CTTAGACATGGA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
1 CTTAGAC-TGGAGATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAG
* * * * *
3007623 CCGACC-GAAAAGGCAGAATGCACAAGCCGGGGATTGGCCCGATCCCTCCCTGTGTGCTATCGAT
65 CCGACCAG-AAAGGCAGGATGCGCAAGCCGGGGATCGACTCGATCCCTCCCTGTGTGCTATCGAT
* * *
3007687 CCTACTGCTGGTCCTACTGTCGCAACCCTCGGTCCGATCCGAT
129 CCTACTGCGGGTCCTACTCTCGCAACCCTCGGTCAGATCCGAT
* * * * * * * *
3007730 CTTAGACTGGGGATGAACTCCATATTCCTAGGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGAGATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGC
* * * *
3007795 C-AGCCAGAAAGGAAGGATGCGCAAGCTGGGGATCGACTCGATCCC-CTCT-TCGTGCTGTCGAT
66 CGA-CCAGAAAGGCAGGATGCGCAAGCCGGGGATCGACTCGATCCCTCCCTGT-GTGCTATCGAT
* *
3007857 CCTGCTGCGGGTCC-AGCTACT-GCAACCCTCGGTCTAG-TTCGAT
129 CCTACTGCGGGTCCTA-CT-CTCGCAACCCTCGGTC-AGATCCGAT
* * *
3007900 CGTT-GACTGGA-AGTGCACTACGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGCACTTA
1 C-TTAGACTGGAGA-TGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCA
* * * *
3007963 GCCGCCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA-TCGA
64 GCCGACCAGAAAGGCAGGATGCGCAAGCCGGGGATCGACTCGA
3008005 GTGGTAGGTG
Statistics
Matches: 226, Mismatches: 39, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
169 7 0.03
170 127 0.56
171 91 0.40
172 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (171 bp):
CTTAGACTGGAGATGAACTACGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAGC
CGACCAGAAAGGCAGGATGCGCAAGCCGGGGATCGACTCGATCCCTCCCTGTGTGCTATCGATCC
TACTGCGGGTCCTACTCTCGCAACCCTCGGTCAGATCCGAT
Found at i:3014709 original size:45 final size:45
Alignment explanation
Indices: 3014610--3014779 Score: 130
Period size: 45 Copynumber: 3.8 Consensus size: 45
3014600 GCATAAGTTG
* * * * **
3014610 GGCCC-TGGTGCGGGC-AGTTGCCTTGATCACCATCGACACATGCC
1 GGCCCATGGTGCGGGCGA-TTGCCTCGACCACCATCGGCACAAGAT
* * *
3014654 GGTCCTTGGTGTGGGCGATTGCCTCGACCACCAAT-GGCACAAGAT
1 GGCCCATGGTGCGGGCGATTGCCTCGACCACC-ATCGGCACAAGAT
* * * * * *
3014699 GGCCCCTGGTGCGGGTGATTGCATCGAACACCATCGGCACATGCT
1 GGCCCATGGTGCGGGCGATTGCCTCGACCACCATCGGCACAAGAT
* * * *
3014744 GGGCCATTGTGCGGGCGGTTGCCTCGACCATCATCG
1 GGCCCATGGTGCGGGCGATTGCCTCGACCACCATCG
3014780 ATACATGCCG
Statistics
Matches: 98, Mismatches: 24, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
44 6 0.06
45 89 0.91
46 3 0.03
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.21
Consensus pattern (45 bp):
GGCCCATGGTGCGGGCGATTGCCTCGACCACCATCGGCACAAGAT
Found at i:3015616 original size:26 final size:26
Alignment explanation
Indices: 3015580--3015632 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3015570 CCAATCCGAT
* *
3015580 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3015606 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3015632 C
1 C
3015633 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3018302 original size:45 final size:45
Alignment explanation
Indices: 3018220--3018417 Score: 184
Period size: 45 Copynumber: 4.4 Consensus size: 45
3018210 GGCACATGTA
* * ** ** *
3018220 TCGACCATCATCGGCACAGGCTGCTCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCCTGGTACGGGCAGTTGCC
* * *
3018265 TCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCCTGGTACGGGCAGTTGCC
* * * * * * * *
3018310 TCGACCACTATCGACATAAGATGGACCCTGGTGCGGGCGGTTGCA
1 TCGACCACCATCGGCACAAGCTGGGCCCTGGTACGGGCAGTTGCC
* *
3018355 TCGAACACCATCGGCA-AATGCTGGGCCATGGTACGGGC-GATTGCC
1 TCGACCACCATCGGCACAA-GCTGGGCCCTGGTACGGGCAG-TTGCC
3018400 TCGACCACCATCGGCACA
1 TCGACCACCATCGGCACA
3018418 TGCCGAGCCT
Statistics
Matches: 124, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
44 3 0.02
45 120 0.97
46 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGGCCCTGGTACGGGCAGTTGCC
Found at i:3018347 original size:90 final size:90
Alignment explanation
Indices: 3018248--3018412 Score: 224
Period size: 90 Copynumber: 1.8 Consensus size: 90
3018238 GGCTGCTCTT
* * * * * *
3018248 TGGTACGGGCACTTGCCTCGACCGCCATCGGCACAA-GCTGGGCCCTGGTGCGGGCGGTTGCCTC
1 TGGTACGGGCACTTGCATCGAACACCATCGGCA-AATGCTGGGCCATGGTACGGGCGATTGCCTC
*
3018312 GACCACTATCGACATAAGATGGACCC
65 GACCACCATCGACATAAGATGGACCC
* **
3018338 TGGTGCGGGCGGTTGCATCGAACACCATCGGCAAATGCTGGGCCATGGTACGGGCGATTGCCTCG
1 TGGTACGGGCACTTGCATCGAACACCATCGGCAAATGCTGGGCCATGGTACGGGCGATTGCCTCG
3018403 ACCACCATCG
66 ACCACCATCG
3018413 GCACATGCCG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
89 2 0.03
90 62 0.97
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (90 bp):
TGGTACGGGCACTTGCATCGAACACCATCGGCAAATGCTGGGCCATGGTACGGGCGATTGCCTCG
ACCACCATCGACATAAGATGGACCC
Found at i:3018897 original size:26 final size:26
Alignment explanation
Indices: 3018859--3018911 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3018849 TCGGTCTGAT
3018859 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3018885 CTTAGAC-AGGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
3018911 C
1 C
3018912 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3019440 original size:26 final size:26
Alignment explanation
Indices: 3019411--3019463 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3019401 GCAGTCCGAT
*
3019411 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3019437 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3019463 C
1 C
3019464 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3019536 original size:196 final size:197
Alignment explanation
Indices: 3019043--3019556 Score: 589
Period size: 196 Copynumber: 2.6 Consensus size: 197
3019033 TCTGGCTGGG
*
3019043 GCTTAGACATGGAATGAAC-TCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGATGCTCA
1 GCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCA
* * * * *
3019107 GTCGACCGGAGAGGGAGAATGCACAAGCCAAGGATCGACCCGGTCCCTCACTGCATGCTGCTGGT
65 GCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCTCACTGCATGCTGCTGAT
* *
3019172 CCTGCTACTGGTCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATAAACTCCG
130 CCTGCTACTAGTCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATAAACTCCG
3019237 CAT
195 CAT
* * * *
3019240 GGTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGTGTGCGGGTC-CTCA
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGC-GGACGCTC-
* * * * * * *
3019304 ATCC-ACCGGAAAAGCAGAATGCGCAAGCCAGGGATCGGCCCGATCCCTC-TTGCGTGCTG-TCG
64 AGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCTCACTGCATGCTGCT-G
* * * * * *
3019366 ATCCTGTTGCTAGTCCTGTTGCCGCAACCCTCAGTGCAGTCCGATCTTATACTGGGAATGAACTC
128 ATCCTGCTACTAGTCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATAAACTC
*
3019431 CGTAT
193 CGCAT
* * * *
3019436 GCTTAGAC-TGGGGATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGTG-CGCTC
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCG-GACGCTC
* * * *
3019499 AGCCGGCCAGAGAGGCAGGATGCACAAGCCGGGGATCGACCCCG-T-CC-CACTGCATGCT
64 AGCCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGA-CCCGATCCCTCACTGCATGCT
3019557 ATCGATCCCG
Statistics
Matches: 263, Mismatches: 44, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
194 1 0.00
195 16 0.06
196 146 0.56
197 94 0.36
198 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (197 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGACGCTCAG
CCGACCGGAGAGGCAGAATGCACAAGCCAGGGATCGACCCGATCCCTCACTGCATGCTGCTGATC
CTGCTACTAGTCCTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATAAACTCCGC
AT
Found at i:3020454 original size:45 final size:45
Alignment explanation
Indices: 3020405--3020560 Score: 136
Period size: 45 Copynumber: 3.5 Consensus size: 45
3020395 GTACGGGCAC
* * * *
3020405 TTGCCTCGACCGCCATTGGCATAAGCTGGGCCT-TAGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCATAAGAT-GGCCTCTAGTGCGGGCGG
* *
3020450 TTGCCTTGACCACCATCGGCATAAGATGGCCTCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCATAAGATGGCCTCTAGTGCGGGCGG
* * * * * * * * * *
3020495 TTGCATCGAACATCATCGGCACATGTTGG-GTCGTGGTGCGGACGA
1 TTGCCTCGACCACCATCGGCATAAGATGGCCTC-TAGTGCGGGCGG
3020540 TTGCCTCGACCACCATCGGCA
1 TTGCCTCGACCACCATCGGCA
3020561 CATGCCAAGC
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
44 7 0.08
45 83 0.92
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCATAAGATGGCCTCTAGTGCGGGCGG
Found at i:3021865 original size:45 final size:45
Alignment explanation
Indices: 3021623--3021863 Score: 243
Period size: 45 Copynumber: 5.4 Consensus size: 45
3021613 CACATGCATT
* **
3021623 GACCATCATCGGCACAAGCT-GCCCTTTGGTAG-GGGCACTTGCCTC
1 GACCACCATCGGCACAAGCTGGCCC-TTGGT-GCGGGCGGTTGCCTC
** * * *
3021668 GACTGCCATCGACACAAGCTGGGCCTTGGTGCAGGCGGTTGCCTC
1 GACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTC
* * * **
3021713 GATCACCATTGGCACAAGCTGCCCCTTGGTGCGGGCAATTGCCTC
1 GACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTC
* * ** *
3021758 GACCACCATCGGCACAAGATGGCCCCTGGTATGGGCGGTTGCATC
1 GACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTC
* * * * *
3021803 GAACACCATCGGCACATGCTGGGCCGTGGTGCGGACGGTTGCCTC
1 GACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTC
3021848 GACCACCATCGGCACA
1 GACCACCATCGGCACA
3021864 TGTCGAGCCT
Statistics
Matches: 156, Mismatches: 38, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
44 1 0.01
45 152 0.97
46 3 0.02
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
GACCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCCTC
Found at i:3023782 original size:45 final size:45
Alignment explanation
Indices: 3023622--3023779 Score: 172
Period size: 45 Copynumber: 3.5 Consensus size: 45
3023612 GTACGGGCAC
* * * *
3023622 TTGCTTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
* * *
3023667 TTGCCTCGACCACCATCGGCATAAGATGGGCCCTGGTGTGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
* * ** * * *
3023712 TTGCATCGAACACCATTAGCACATGCTTGGCCGTGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
* *
3023757 TTGCCTCGACCACTAACGGCACA
1 TTGCCTCGACCACCATCGGCACA
3023780 TGCCGAGCCC
Statistics
Matches: 90, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 90 1.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGCGGGCGA
Found at i:3024272 original size:26 final size:26
Alignment explanation
Indices: 3024221--3024273 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3024211 CCGATTCGAT
*
3024221 CTTAGACTGAGAATGAACTCTATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
3024247 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
3024273 C
1 C
3024274 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:3026187 original size:26 final size:26
Alignment explanation
Indices: 3026151--3026203 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3026141 CCGGTTTGAT
*
3026151 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3026177 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3026203 C
1 C
3026204 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3026542 original size:26 final size:26
Alignment explanation
Indices: 3026506--3026558 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3026496 CCAATCTGAT
*
3026506 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
3026532 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3026558 C
1 C
3026559 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3027601 original size:45 final size:45
Alignment explanation
Indices: 3027488--3027602 Score: 158
Period size: 45 Copynumber: 2.6 Consensus size: 45
3027478 GTACGGGCAC
* * * *
3027488 TTGCCTCGATCACCATCGGCACAAGTTGGGCCGTGGTGCAGGCGG
1 TTGCCTCAACCACCATCGGCACATGCTGGGCCGTGGTGCAGGCGG
* * * *
3027533 TTACCTCAACCACCATCGACACATGCTGGGTCGTGGTGCATGCGG
1 TTGCCTCAACCACCATCGGCACATGCTGGGCCGTGGTGCAGGCGG
3027578 TTGCCTCAACCACCATCGGCACATG
1 TTGCCTCAACCACCATCGGCACATG
3027603 ACGAGCCCCG
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (45 bp):
TTGCCTCAACCACCATCGGCACATGCTGGGCCGTGGTGCAGGCGG
Found at i:3028115 original size:159 final size:159
Alignment explanation
Indices: 3027887--3028173 Score: 384
Period size: 159 Copynumber: 1.8 Consensus size: 159
3027877 CACTGCGGGT
* * * * *
3027887 CCCTCAGTCTGGTTGGGGCTTAGACCGGGATTGAATTCCGTATGCCTAAGTCAACCCATGAAATG
1 CCCTCAGTCTGGCTAGGGCTTAGACCGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAATA
* * * * *
3027952 AGCATG-TGGACGCTTAGCAGGCTAGAGAGGCATAATGCGCAAGCCGGGGATCGATCTGATCCCA
66 AGCATGCAGG-CGCTTAGCAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCA
3028016 ATCTACGTGTTGCTAGTCCCACTGCCACGA
130 ATCTACGTGTTGCTAGTCCCACTGCCACGA
*
3028046 CCCTCAGTTTGGCTAGGGCTTAGACAC-GGAATG-ATCTCCGTATGCCTAAG-CTAACCCACGAA
1 CCCTCAGTCTGGCTAGGGCTTAGAC-CGGGAATGAAT-TCCGTATGCCTAAGTC-AACCCACGAA
* * *
3028108 ATAAGCATGCAGGGGCTTAGCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCC
63 ATAAGCATGCAGGCGCTTAGCAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
3028173 C
128 C
3028174 CCCAACATGC
Statistics
Matches: 110, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
158 3 0.03
159 104 0.95
160 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (159 bp):
CCCTCAGTCTGGCTAGGGCTTAGACCGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAATA
AGCATGCAGGCGCTTAGCAGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCAA
TCTACGTGTTGCTAGTCCCACTGCCACGA
Found at i:3029782 original size:26 final size:26
Alignment explanation
Indices: 3029743--3029795 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3029733 CCGGTCTGAT
3029743 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
3029769 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
3029795 C
1 C
3029796 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:3029881 original size:162 final size:159
Alignment explanation
Indices: 3029606--3030039 Score: 360
Period size: 159 Copynumber: 2.7 Consensus size: 159
3029596 TTTGGTTAGG
* * *
3029606 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGGGCGTGCGGGCACTCAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAG
* * * * *
3029671 TCGGTCAGAGAGGCAGGATGAGCAAGTCAAAGATTGGCTCGATCCCCCTCTACGTGCTGCTACCG
66 TCAGCCAGAGAGGCAGAATGAGCAAGTCAAAGATCGGCCCGATCCCCCTC--CGTG-TGCTACCG
3029736 GTCTGATCTTAGACTGAGAATGAACTCCGTAT
128 GTCTGATCTTAGACTGAGAATGAACTCCGTAT
** ** *
3029768 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAG
* ** *** * *
3029833 -CTAGCCAGAGAGGCATAATTCGCAAGTCGGGGATCGGCCCGGTCCCCCTCCGTGTGCTACCGCT
66 TC-AGCCAGAGAGGCAGAATGAGCAAGTCAAAGATCGGCCCGATCCCCCTCCGTGTGCTACCGGT
*** *** * *
3029897 CCTG--CTGCCACT-ACCCTCG--GTCCGGCTAGG
130 -CTGATCTTAGACTGAGAAT-GAACTCC-G-TA-T
* * * * **
3029927 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCA
* * * ** *
3029991 GTCGGCCAGAGAGGCAGAATGTGCAAGCCAGGGATCAGCCCGATCCCCC
65 GTCAGCCAGAGAGGCAGAATGAGCAAGTCAAAGATCGGCCCGATCCCCC
3030040 CTGCGTGCTG
Statistics
Matches: 222, Mismatches: 42, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
156 3 0.01
157 3 0.01
158 8 0.04
159 105 0.47
160 9 0.04
161 1 0.00
162 93 0.42
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCACTCAG
TCAGCCAGAGAGGCAGAATGAGCAAGTCAAAGATCGGCCCGATCCCCCTCCGTGTGCTACCGGTC
TGATCTTAGACTGAGAATGAACTCCGTAT
Found at i:3031935 original size:90 final size:90
Alignment explanation
Indices: 3031838--3032040 Score: 244
Period size: 90 Copynumber: 2.3 Consensus size: 90
3031828 GTACGGGCAC
* * * * * * * *
3031838 TTGCCTCGAGCGCCATCGGCACAAGCTGGGCCTTGGTACGGGCGGTTGCGTCGATCAGCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACACCATCGGC
* *
3031903 ACATGCCGGCCCATGGTGCTGGTGA
66 ACATGCCGGCCCATGGTGCGGGCGA
* * **
3031928 TTGCCTCGACCACCATCAGCATAAGATGGCCCCTGGTGTGGGCGGTTGCATCGAACACCATCGGC
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACACCATCGGC
* * *
3031993 ACATGCTGGGCCATGGTGCGGGCGG
66 ACATGCCGGCCCATGGTGCGGGCGA
*
3032018 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGGCACA
3032041 TGCCGAGCCC
Statistics
Matches: 93, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTACGGGCGGTTGCATCGAACACCATCGGC
ACATGCCGGCCCATGGTGCGGGCGA
Found at i:3032041 original size:45 final size:45
Alignment explanation
Indices: 3031838--3032043 Score: 205
Period size: 45 Copynumber: 4.6 Consensus size: 45
3031828 GTACGGGCAC
* * * * * *
3031838 TTGCCTCGAGCGCCATCGGCACAAGCTGGGCCTTGGTACGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGCGGGCGG
* * * * * * *
3031883 TTGCGTCGATCAGCATCGGCACATGCCGGCCCATGGTGCTGGTGA
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGCGGGCGG
* * * * * *
3031928 TTGCCTCGACCACCATCAGCATAAGATGGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGCGGGCGG
* * *
3031973 TTGCATCGAACACCATCGGCACATGCTGGGCCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGCGGGCGG
*
3032018 TTGCCTCGACCACCATCGACACATGC
1 TTGCCTCGACCACCATCGGCACATGC
3032044 CGAGCCCCGG
Statistics
Matches: 124, Mismatches: 37, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 124 1.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACATGCTGGCCCATGGTGCGGGCGG
Found at i:3032512 original size:26 final size:26
Alignment explanation
Indices: 3032483--3032535 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3032473 TCGGTCCGAT
* * *
3032483 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3032509 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3032535 C
1 C
3032536 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3032867 original size:26 final size:26
Alignment explanation
Indices: 3032838--3032890 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3032828 CCAGTCTGAT
3032838 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
3032864 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3032890 C
1 C
3032891 CGAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3037083 original size:26 final size:26
Alignment explanation
Indices: 3037047--3037099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3037037 TCGATCTGAT
3037047 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3037073 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3037099 C
1 C
3037100 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3037342 original size:159 final size:158
Alignment explanation
Indices: 3037072--3037366 Score: 367
Period size: 159 Copynumber: 1.9 Consensus size: 158
3037062 AACTCCATAT
* * * * *
3037072 GCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCATAAAACGAGCGTGTGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAACTCAACCCATAAAACAAGCGTGCGGGCACTCAA
* * * * * * *
3037137 CCGACCAAAAAGGCATAATGCTCAAACCGGGGATCGGCCCGATCCCCTTCTACGTGCTGTCGGTC
66 CCGACCAAAAAGGCAGAATGCACAAACCAGGGATCAGCCCGATCCCCCT-TACATGCTGTCGATC
3037202 CCACTGCCATAACCATCGATCCGGTTGGG
130 CCACTGCCATAACCATCGATCCGGTTGGG
* *
3037231 GCTTAGA-TGTGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCA
1 GCTTAGACTG-GGAATGAACTCCATATGCCTAACTCAACCCATAAAACAAGCGTGCGGGCACTCA
* * * * * * *
3037295 ACCGATCGAAGAGGCAGAATGCACAAGCCAGGGATTAGCTCGGTCCCCCTTACATGCTGTCGATC
65 ACCGACCAAAAAGGCAGAATGCACAAACCAGGGATCAGCCCGATCCCCCTTACATGCTGTCGATC
*
3037360 CTACTGC
130 CCACTGC
3037367 TGGTACTACT
Statistics
Matches: 113, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 21 0.19
159 92 0.81
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (158 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAACTCAACCCATAAAACAAGCGTGCGGGCACTCAA
CCGACCAAAAAGGCAGAATGCACAAACCAGGGATCAGCCCGATCCCCCTTACATGCTGTCGATCC
CACTGCCATAACCATCGATCCGGTTGGG
Found at i:3037431 original size:26 final size:26
Alignment explanation
Indices: 3037402--3037454 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3037392 CCGGTCTGAT
3037402 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
3037428 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
3037454 C
1 C
3037455 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:3038835 original size:26 final size:26
Alignment explanation
Indices: 3038799--3038850 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3038789 CCAGTCCAAT
3038799 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
*
3038825 CTTATACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
3038851 ACTAAGTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:3039898 original size:45 final size:45
Alignment explanation
Indices: 3039789--3039901 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
3039779 GTACGGGCAC
* * * * * *
3039789 TTGCCTCGACCACCATCGGCATAGGCTGGGCCCTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGTAG
* *
3039834 TTGCCTCGACCACCATCGGTACAAGATGGCCCCTTGTG-TGGTAAG
1 TTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGT-AG
3039879 TTGCCTCGACCACCATCGGTACA
1 TTGCCTCGACCACCATCGGTACA
3039902 TGCTGAGTCC
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
44 3 0.05
45 56 0.95
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGTACAAGATGGCCCCTGGTGCGGGTAG
Found at i:3040009 original size:30 final size:30
Alignment explanation
Indices: 3039968--3040029 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
3039958 GGGCAGGATG
* * *
3039968 CTATGCTAGGCTTTGGTCTCACTGGCTGGC
1 CTATGCCAGGCTTTGCTCTCACGGGCTGGC
3039998 CTATGCCAGGCTTTGCTCTCACGGGCTGGC
1 CTATGCCAGGCTTTGCTCTCACGGGCTGGC
3040028 CT
1 CT
3040030 GCAAGTTGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.10, C:0.31, G:0.29, T:0.31
Consensus pattern (30 bp):
CTATGCCAGGCTTTGCTCTCACGGGCTGGC
Found at i:3040580 original size:77 final size:77
Alignment explanation
Indices: 3040453--3040602 Score: 230
Period size: 77 Copynumber: 1.9 Consensus size: 77
3040443 ATGCGTAAGC
* *
3040453 CGAGGATCGGCTCGGTCCCCCTCTGCGTGCTACTAATCTCGCTGCGGGTCCCTCGGTCTGGTTGG
1 CGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACTAATCTCACTGCGGGTCCCTCGGTCTGGTTGG
3040518 AGCTTAGAAAGT
66 AGCTTAGAAAGT
* * *
3040530 CGAGGATCGGCCCGGTCCCCCTCTGTGTGTTA-TCGATCTCACTGCGGGTCCCTCGGTCTGGTTG
1 CGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACT-AATCTCACTGCGGGTCCCTCGGTCTGGTTG
*
3040594 GGGCTTAGA
65 GAGCTTAGA
3040603 CCAGGAATGA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
76 1 0.02
77 65 0.98
ACGTcount: A:0.11, C:0.30, G:0.32, T:0.27
Consensus pattern (77 bp):
CGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACTAATCTCACTGCGGGTCCCTCGGTCTGGTTGG
AGCTTAGAAAGT
Found at i:3041092 original size:26 final size:26
Alignment explanation
Indices: 3041053--3041103 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3041043 GGTCCGATCC
3041053 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
*
3041079 TAGACTGGGGATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
3041104 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:3042116 original size:45 final size:45
Alignment explanation
Indices: 3042047--3042204 Score: 147
Period size: 45 Copynumber: 3.5 Consensus size: 45
3042037 GTATGGGCAC
* * * ** *
3042047 TTGCCTCGACCGCCATCAGTACAAGCTGATCCCTAGTGCAGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTAGTGCAGGCGG
* *
3042092 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGTAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTAGTGCAGGCGG
* * * * * * * *
3042137 CTGCATCGAACACCATCGGCACATA-CTGGGCCATGGTGCGGGCGA
1 TTGCCTCGACCACCATCGGCACA-AGCTGGCCCCTAGTGCAGGCGG
*
3042182 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGGCACA
3042205 TGTCGAGCCT
Statistics
Matches: 90, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
45 89 0.99
46 1 0.01
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTAGTGCAGGCGG
Found at i:3044574 original size:26 final size:26
Alignment explanation
Indices: 3044536--3044588 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3044526 CCACTCTAAT
* *
3044536 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCATATG
3044562 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTTCATATG
3044588 C
1 C
3044589 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCATATG
Found at i:3044919 original size:26 final size:26
Alignment explanation
Indices: 3044890--3044942 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3044880 CCGATCCGAT
3044890 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
3044916 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
3044942 C
1 C
3044943 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:3045070 original size:195 final size:195
Alignment explanation
Indices: 3044733--3045093 Score: 467
Period size: 195 Copynumber: 1.9 Consensus size: 195
3044723 TAGACATGGA
** * *
3044733 ATGAACTCCGTATGCCTAAACGAACCCATGAAACAAGCGTGCGGCCGCTCAACCAGCCGGAGAGG
1 ATGAACTCCGTATGCCTAAACGAACCCACAAAACAAGCGTGCGGCCGCTCAACCAGCCAGAAAGG
* * * **
3044798 CAGAATGTGCAAGCTGAGGATCGACCTGGTCCCCTCTGCGTGCTGTCGATCCTGCTGCAGGTCCT
66 CAGAATGCGCAAGCTGAAGATCGACCTAGTCCCCTCTGCGTGCTGTCGATCCCACTGCAGGTCCT
*
3044863 ACTACCCAACCCTCGATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGG
131 ACTACCCAACCCTCAATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGG
* * * ** * *
3044928 ATGAACTCCGTATGCCTAAGTC-AACTCACAAAACGAGCGTGCGGGTGCTCAGCCTGCCAGAAAG
1 ATGAACTCCGTATGCCTAA-ACGAACCCACAAAACAAGCGTGCGGCCGCTCAACCAGCCAGAAAG
* * *
3044992 GCAGGATGCGCAAGCTGAAGATCGAGCTAGTCCCCTCTG-ATG-TCGTCGATCCCACTGCAGGTC
65 GCAGAATGCGCAAGCTGAAGATCGACCTAGTCCCCTCTGCGTGCT-GTCGATCCCACTGCAGGTC
* * *
3045055 CTACTGCCACAACCCTCAATCCGGTCTGATCTTAGACTG
129 CTACTACC-CAACCCTCAATCCGATCCGATCTTAGACTG
3045094 GGAGCGCACT
Statistics
Matches: 140, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
193 1 0.01
194 26 0.19
195 112 0.80
196 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (195 bp):
ATGAACTCCGTATGCCTAAACGAACCCACAAAACAAGCGTGCGGCCGCTCAACCAGCCAGAAAGG
CAGAATGCGCAAGCTGAAGATCGACCTAGTCCCCTCTGCGTGCTGTCGATCCCACTGCAGGTCCT
ACTACCCAACCCTCAATCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCTTAGACTGGGG
Found at i:3046039 original size:45 final size:45
Alignment explanation
Indices: 3045881--3046031 Score: 207
Period size: 45 Copynumber: 3.4 Consensus size: 45
3045871 GTTCGGGCAC
* *
3045881 TTGCCTCGACCGCCATCGGCACAAGCTGGGCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* *
3045926 TTGCCTCGACCACCATCGGCACAAGAT-GGCCCTGGTGCAGACGG
1 TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
* * * *
3045970 TTGCATCGAACC-CCATCGGCACATGTTGGGCCGTGGTGCGGGCGG
1 TTGCCTCG-ACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
3046015 TTGCCTCGACCACCATC
1 TTGCCTCGACCACCATC
3046032 AACACATGCC
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
44 38 0.41
45 54 0.59
ACGTcount: A:0.15, C:0.34, G:0.32, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGGCCCTGGTGCGGGCGG
Found at i:3046119 original size:63 final size:63
Alignment explanation
Indices: 3046020--3046153 Score: 169
Period size: 63 Copynumber: 2.1 Consensus size: 63
3046010 GGCGGTTGCC
* * * **
3046020 TCGACCACCATCAACACATGCCGAGCTCCGATCGACCTCCGAAACGAGCGTGTAAGCACCAAA
1 TCGACCACCATCAACACATGCCGAGCCCCGATCGACCCCCCAAACGAGCGTACAAGCACCAAA
*** * *
3046083 TCGACCACCATTGGCACATGCCGAGCCCCGATCGACCCCCCAAATGAGCGTACGAGCACCAAA
1 TCGACCACCATCAACACATGCCGAGCCCCGATCGACCCCCCAAACGAGCGTACAAGCACCAAA
*
3046146 CCGACCAC
1 TCGACCAC
3046154 TGGGGGTGGG
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.30, C:0.40, G:0.19, T:0.11
Consensus pattern (63 bp):
TCGACCACCATCAACACATGCCGAGCCCCGATCGACCCCCCAAACGAGCGTACAAGCACCAAA
Found at i:3046542 original size:26 final size:26
Alignment explanation
Indices: 3046506--3046556 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3046496 GGTTCGATCA
*
3046506 TAGAATGGGAATGAACTTTGTATGCT
1 TAGAATGGGAATGAACTTCGTATGCT
*
3046532 TAGACTGGGAATGAACTTCGTATGC
1 TAGAATGGGAATGAACTTCGTATGC
3046557 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TAGAATGGGAATGAACTTCGTATGCT
Found at i:3047550 original size:26 final size:26
Alignment explanation
Indices: 3047514--3047564 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3047504 CCGGTCCGAT
3047514 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
* *
3047540 CTTAGATTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACCCCGTAT
3047565 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:3048867 original size:45 final size:45
Alignment explanation
Indices: 3048818--3049017 Score: 215
Period size: 45 Copynumber: 4.5 Consensus size: 45
3048808 GTACAGGCAC
* *
3048818 TTGCCTCGACCGCCATCGACACAAGCTAGG-CCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCCTGGTGCGGGCGG
* * * *
3048863 TTGCCTCGATCACCATCGGCACATGCCGGCCCCTGGTGCGGG-GA
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGG
* * *
3048907 TTGCCTCGACCACCATCGGCATAAGATGGTCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGG
* * * * * *
3048952 TTGCATCGAACACCATCGGCACATGCTGGGCCGTGGTGCGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGG
* * *
3048997 TTGCCTTGACAACCATTGGCA
1 TTGCCTCGACCACCATCGGCA
3049018 TATCCCGAGC
Statistics
Matches: 127, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
44 39 0.31
45 88 0.69
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCCTGGTGCGGGCGG
Found at i:3048923 original size:89 final size:90
Alignment explanation
Indices: 3048818--3049012 Score: 259
Period size: 89 Copynumber: 2.2 Consensus size: 90
3048808 GTACAGGCAC
* * * *
3048818 TTGCCTCGACCGCCATCGACACAAGCTAGG-CCCTGGTGCGGGCGGTTGCCTCGATCACCATCGG
1 TTGCCTCGACCACCATCGACACAAGAT-GGTCCCTGGTGCGGGCGGTTGCATCGAACACCATCGG
3048882 CACATGCCGGCCCCTGGTGCGGG-GA
65 CACATGCCGGCCCCTGGTGCGGGTGA
* *
3048907 TTGCCTCGACCACCATCGGCATAAGATGGTCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGC
1 TTGCCTCGACCACCATCGACACAAGATGGTCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGC
* * * *
3048972 ACATGCTGGGCCGTGGTGCGGGTGG
66 ACATGCCGGCCCCTGGTGCGGGTGA
* *
3048997 TTGCCTTGACAACCAT
1 TTGCCTCGACCACCAT
3049013 TGGCATATCC
Statistics
Matches: 92, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
88 2 0.02
89 75 0.82
90 15 0.16
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGACACAAGATGGTCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGC
ACATGCCGGCCCCTGGTGCGGGTGA
Found at i:3049465 original size:158 final size:157
Alignment explanation
Indices: 3049300--3049602 Score: 387
Period size: 157 Copynumber: 1.9 Consensus size: 157
3049290 CTGATCTTGT
* * *
3049300 TACGGGTCCCTTGGTCTGGTTGGGGCTTAGACCAAGAATGAACTCCGTATGCCTAAGTCAACCCA
1 TACGGGTCCCTTAGTCAGGTTGGGGCTTAGACCAAGAATAAACTCCGTATGCCTAAGTCAA-CCA
* * *
3049365 CGAAATGAGCGTGACG-GTGCTCAACCAATCGGAGAGACAGGATGAC-CAAGCCAAGGATC-GAC
65 CGAAACGAGCAT-ACGAGCGCTCAACCAATCGGAGAGACAGGATG-CGCAAGCCAAGGATCAG-C
*
3049427 CCGGTCCCCCTTTGCATGCCGTCGATCCCAC
127 CCGGTCCCCCTCTGCATGCCGTCGATCCCAC
* * * *
3049458 TACGGGTCCCTTAGTCAGGTTGGGGCTTAGGCCAGGAATAAACTTCGTATGCCTAAGTCAACCAG
1 TACGGGTCCCTTAGTCAGGTTGGGGCTTAGACCAAGAATAAACTCCGTATGCCTAAGTCAACCAC
** * ** *
3049523 GAAACGAGCATACGAGCGCTCAGTCGATCGGAGAGGTAGGATGCGCAAGCCGAGGATCAGCCCGG
66 GAAACGAGCATACGAGCGCTCAACCAATCGGAGAGACAGGATGCGCAAGCCAAGGATCAGCCCGG
*
3049588 TCCTCCTCTGCATGC
131 TCCCCCTCTGCATGC
3049603 TACTACCATC
Statistics
Matches: 124, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
156 4 0.03
157 64 0.52
158 56 0.45
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.19
Consensus pattern (157 bp):
TACGGGTCCCTTAGTCAGGTTGGGGCTTAGACCAAGAATAAACTCCGTATGCCTAAGTCAACCAC
GAAACGAGCATACGAGCGCTCAACCAATCGGAGAGACAGGATGCGCAAGCCAAGGATCAGCCCGG
TCCCCCTCTGCATGCCGTCGATCCCAC
Found at i:3049653 original size:26 final size:26
Alignment explanation
Indices: 3049617--3049669 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3049607 ACCATCTGAT
*
3049617 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
3049643 CTTAGATTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
3049669 C
1 C
3049670 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:3051955 original size:26 final size:26
Alignment explanation
Indices: 3051919--3051971 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3051909 TCGATCTGAT
3051919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
3051945 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3051971 C
1 C
3051972 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3052958 original size:26 final size:26
Alignment explanation
Indices: 3052908--3052958 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3052898 CAATCCGATC
* *
3052908 TTAGACTGGGAATGAACTTCGTATAG
1 TTAGACTGGGAATGAACTCCATATAG
3052934 TTAGACTAGGG-ATGAACTCCATATA
1 TTAGACT-GGGAATGAACTCCATATA
3052959 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATAG
Found at i:3053941 original size:45 final size:44
Alignment explanation
Indices: 3053892--3054094 Score: 151
Period size: 45 Copynumber: 4.5 Consensus size: 44
3053882 GTATGGGCAC
* *
3053892 TTGCCTCGACCGCCATCGACACAAGCTGGGCCCTGGTGTAGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGTAGGTGG
* * * * * * *
3053937 TTGCCTCAATCACCATTGGCACATA-CTGACCCTTGGTGCAGGCGA
1 TTGCCTCGACCACCATCGGCACA-AGCTGGCCC-TGGTGTAGGTGG
* *
3053982 TTGCCTCGACCACCATCGGCACAAGATAGCCTCTGGT-TCAGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGCC-CTGGTGT-AGGTGG
* * * ** * *
3054027 TTGCATCGAACACCATCGGCACATGCTGGGCAATGGTG-CGGATAG
1 TTGCCTCGACCACCATCGGCACAAGCT-GGCCCTGGTGTAGG-TGG
*
3054072 TTGCCTCGACCACCATCGTCACA
1 TTGCCTCGACCACCATCGGCACA
3054095 TGTCGAGCCT
Statistics
Matches: 120, Mismatches: 30, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
44 7 0.06
45 109 0.91
46 4 0.03
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.22
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGCCCTGGTGTAGGTGG
Found at i:3053973 original size:90 final size:90
Alignment explanation
Indices: 3053848--3054050 Score: 209
Period size: 90 Copynumber: 2.3 Consensus size: 90
3053838 TGATGGCGCA
* * ** ** *
3053848 TGCATCGACCATCATCGGCACAGGCTG-CCCTTTGGTATGGGC-ACTTGCCTCGACCGCCATCGA
1 TGCATCGAACACCATCGGCACATACTGACCC-TTGGTACAGGCGA-TTGCCTCGACCACCATCGA
* *
3053911 CACAAGCTGGGCC-CTGGTGT-AGGTGGT
64 CACAAGAT-AGCCTCTGGT-TCAGGTGGT
* * * *
3053938 TGCCTC-AATCACCATTGGCACATACTGACCCTTGGTGCAGGCGATTGCCTCGACCACCATCGGC
1 TGCATCGAA-CACCATCGGCACATACTGACCCTTGGTACAGGCGATTGCCTCGACCACCATCGAC
3054002 ACAAGATAGCCTCTGGTTCAGGTGGT
65 ACAAGATAGCCTCTGGTTCAGGTGGT
3054028 TGCATCGAACACCATCGGCACAT
1 TGCATCGAACACCATCGGCACAT
3054051 GCTGGGCAAT
Statistics
Matches: 92, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
89 5 0.05
90 81 0.88
91 6 0.07
ACGTcount: A:0.20, C:0.32, G:0.26, T:0.22
Consensus pattern (90 bp):
TGCATCGAACACCATCGGCACATACTGACCCTTGGTACAGGCGATTGCCTCGACCACCATCGACA
CAAGATAGCCTCTGGTTCAGGTGGT
Found at i:3054064 original size:90 final size:90
Alignment explanation
Indices: 3053892--3054094 Score: 216
Period size: 90 Copynumber: 2.3 Consensus size: 90
3053882 GTATGGGCAC
* * * * *
3053892 TTGCCTCGACCGCCATCGACACAAGCTGGGCCCTGGTGTAGGTGGTTGCCTCAATCACCATTGGC
1 TTGCCTCGACCACCATCGACACAAGATGAGCCCTGGTGTAGGTGGTTGCATCAATCACCATCGGC
** *
3053957 ACATACTGACCCTTGGTGCAGGCGA-
66 ACATACTGACCAATGGTGC-GGAGAG
*
3053982 TTGCCTCGACCACCATCGGCACAAGAT-AGCCTCTGGT-TCAGGTGGTTGCATCGAA-CACCATC
1 TTGCCTCGACCACCATCGACACAAGATGAGCC-CTGGTGT-AGGTGGTTGCATC-AATCACCATC
* ** *
3054044 GGCACATGCTGGGCAATGGTGCGGATAG
63 GGCACATACTGACCAATGGTGCGGAGAG
*
3054072 TTGCCTCGACCACCATCGTCACA
1 TTGCCTCGACCACCATCGACACA
3054095 TGTCGAGCCT
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
89 7 0.07
90 86 0.91
91 2 0.02
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.22
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGACACAAGATGAGCCCTGGTGTAGGTGGTTGCATCAATCACCATCGGC
ACATACTGACCAATGGTGCGGAGAG
Found at i:3054934 original size:15 final size:15
Alignment explanation
Indices: 3054914--3054955 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
3054904 CCAAAGGGCT
3054914 TGATGTTTGC-GAATC
1 TGATGTTTGCAG-ATC
3054929 TGATGTTTGCAGATC
1 TGATGTTTGCAGATC
*
3054944 TGATGGTTGCAG
1 TGATGTTTGCAG
3054956 GTCAGAAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 24 0.96
16 1 0.04
ACGTcount: A:0.19, C:0.12, G:0.31, T:0.38
Consensus pattern (15 bp):
TGATGTTTGCAGATC
Found at i:3059607 original size:13 final size:13
Alignment explanation
Indices: 3059589--3059613 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3059579 CAATAGCACA
3059589 TGATGGCACATGG
1 TGATGGCACATGG
3059602 TGATGGCACATG
1 TGATGGCACATG
3059614 CATCGATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3060325 original size:26 final size:26
Alignment explanation
Indices: 3060289--3060341 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3060279 CCAGTCTGAT
*
3060289 CTTAGACTGGGAATGTACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3060315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
3060341 C
1 C
3060342 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3060608 original size:26 final size:26
Alignment explanation
Indices: 3060579--3060630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3060569 CCGGTCTGAT
3060579 CTTAGACTG-GGAATGAACTCCGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
*
3060605 CTTAGACTGAGGATGAACTTCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
3060631 TCTAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:3061414 original size:26 final size:26
Alignment explanation
Indices: 3061363--3061415 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3061353 TTGGTTCGAT
* *
3061363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
*
3061389 CTTAGACTGGGAAAGAACTCTATATG
1 CTTAGACTGGGAAAGAACTCCATATG
3061415 C
1 C
3061416 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:3062066 original size:26 final size:26
Alignment explanation
Indices: 3062025--3062077 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3062015 CCAGTCTGAT
3062025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3062051 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
3062077 C
1 C
3062078 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3062317 original size:174 final size:174
Alignment explanation
Indices: 3062022--3062346 Score: 413
Period size: 174 Copynumber: 1.9 Consensus size: 174
3062012 GGTCCAGTCT
* * **
3062022 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACCCCATATGCCTAAGGAAA
* ** * * *
3062087 CCCATGAAACGAGCGTGTGGGCGCTCAGCCGACCAGAGAGACAGGATGCGCAAGCCGAGGATC-A
66 CCCACGAAACGAGCGTACGGGCGCTCAGCCGACCACAGAGACAGAATGCACAAGCCGAGGATCGA
3062151 GCCCGATCCCCCTCTGCGTGCTGTTGTCGATCCCGCTGTCGATCC
131 -CCCGATCCCCCTCTGCGTGCTGTTGTCGATCCCGCTGTCGATCC
3062196 GATCTTAGACTGGGAATGAACTCCGTATGC-TATGACT-GGGAATGAACCCCATATGCCTAAGGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTA-GACTAGGG-ATGAACCCCATATGCCTAAGGA
* * * * ** * *
3062259 AACCCACGAAATGAGTGTACGGGTGCTGAGCCGGTCACAGAGGCATAATGCACAAGCCGAGGATC
64 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGACCACAGAGACAGAATGCACAAGCCGAGGATC
* * *
3062324 GACTCGGTCCCCCTTTGCGTGCT
129 GACCCGATCCCCCTCTGCGTGCT
3062347 ATCGGTCCCA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
173 5 0.04
174 121 0.95
175 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (174 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGGATGAACCCCATATGCCTAAGGAAA
CCCACGAAACGAGCGTACGGGCGCTCAGCCGACCACAGAGACAGAATGCACAAGCCGAGGATCGA
CCCGATCCCCCTCTGCGTGCTGTTGTCGATCCCGCTGTCGATCC
Found at i:3064003 original size:26 final size:26
Alignment explanation
Indices: 3063965--3064017 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3063955 TCGGTCCGAT
*
3063965 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
3063991 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3064017 C
1 C
3064018 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3064302 original size:333 final size:334
Alignment explanation
Indices: 3063681--3064501 Score: 821
Period size: 333 Copynumber: 2.5 Consensus size: 334
3063671 ATGCACTACG
* * * * * * * * *
3063681 TATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGTTCAGCCAGCCGAAGAGCCAGAATGCAT
1 TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTGAGCCAGCCAAAGAGGCATAATGCAC
* * ** * * * **** * *
3063746 AAGCCGAGGATCGGCTTGGTCCCCCTTTATG--TGCTGTCGATCCCGCT-ACGGGTCCGTCGGTC
66 AAGCCGGGGATCAGCCCGGGCCCCC--TATGCATGCTATCGATCCCGCTGCCACAACCCTCCGTC
* * * *
3063808 CGGTTGGGGCTTAGAC-CGAGAATGAAC-TCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGT
129 CGGTTGGGGCTTAGACATG-GAATGAACTTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGT
* ** * * ** **
3063871 GGGTGCTCAGCGGGTCAGGGAGGCAGGATGCGCAAGCCAAGGATCGACCCGATCCCCTTCTGTGT
193 AGGCACTCAGCCGGTCAGGGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCTGCAT
** *
3063936 GCTACTGCCAATCCCGCTGTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAG
258 GCTACTGCCAATCCCGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAG
* *
3064001 GAATGAACTCCG
323 GAATAAACTCCA
* ** * * * * * **
3064013 TATGCCTACGTCAACCCATGAAATGAGTGTGCGGGCGTTGAGTCGGTCGAAGAGGCATAATGTGC
1 TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTGAGCCAGCCAAAGAGGCATAATGCAC
* * * * *
3064078 ATGCCGGGGATCGGCCCGGGCCCCCTATGCGTGTTGTCGATCCCGCTGCCACAACCCTCCGTCCG
66 AAGCCGGGGATCAGCCCGGGCCCCCTATGCATGCTATCGATCCCGCTGCCACAACCCTCCGTCCG
3064143 GCTT-GGGCTTAGACATGGAATGAACTTC-GTATGCCTAAGCCAACCCACGAAACAAGCGTGTAG
131 G-TTGGGGCTTAGACATGGAATGAACTTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGTAG
* * * * * *
3064206 GCACTCAGCCGGTC-GGAGAGGTAGAATGTGCAAGTCGATGATCGGCCCGATCCCCCCCTGCATG
195 GCACTCAGCCGGTCAGG-GAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCTGCATG
* * * * * * * *
3064270 CTGCTGTCGATCTCGCTACCGGTTCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
259 CTACTGCCAATCCCGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGG
3064335 AATAAACTCCA
324 AATAAACTCCA
* *
3064346 TATGCCTAAGTCAATCCATGAAATGAGCATGCGGGTGCTGAGCCAGCCAAAGAGGCATAATGCAC
1 TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTGAGCCAGCCAAAGAGGCATAATGCAC
* * * * * * * *
3064411 AAGCCGGGGATCAGCCTGGTCCCCCTCTGCATGCTATCGGTCCCTCTGCCATAACCTTCGGTCCG
66 AAGCCGGGGATCAGCCCGGGCCCCCTATGCATGCTATCGATCCCGCTGCCACAACCCTCCGTCCG
*
3064476 GTTGGGGCCTAGACATGGAATGAACT
131 GTTGGGGCTTAGACATGGAATGAACT
3064502 CTGAATATGC
Statistics
Matches: 397, Mismatches: 84, Indels: 15
0.80 0.17 0.03
Matches are distributed among these distances:
330 4 0.01
332 91 0.23
333 297 0.75
334 5 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (334 bp):
TATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTGAGCCAGCCAAAGAGGCATAATGCAC
AAGCCGGGGATCAGCCCGGGCCCCCTATGCATGCTATCGATCCCGCTGCCACAACCCTCCGTCCG
GTTGGGGCTTAGACATGGAATGAACTTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGTAGG
CACTCAGCCGGTCAGGGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCCCCCCTGCATGCT
ACTGCCAATCCCGCTACCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAA
TAAACTCCA
Found at i:3064334 original size:26 final size:26
Alignment explanation
Indices: 3064298--3064350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3064288 CCGGTTCAAT
* * *
3064298 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
3064324 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
3064350 C
1 C
3064351 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:3066087 original size:13 final size:13
Alignment explanation
Indices: 3066069--3066093 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3066059 CAATGGCACA
3066069 TGATGGCACATGG
1 TGATGGCACATGG
3066082 TGATGGCACATG
1 TGATGGCACATG
3066094 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:3066140 original size:548 final size:548
Alignment explanation
Indices: 3065103--3066169 Score: 1662
Period size: 548 Copynumber: 1.9 Consensus size: 548
3065093 AATTTGGTAG
* *
3065103 ACATGATCCTTGGTATTTTTGTTGGCACACACAAAACAAATTCAGCTAAAAACTCCAAGTGGAGA
1 ACATGATCCTTGGTATTTTTGTTGGCACACACAAAACAAATTCAGCTAAAAACACCAAGTGGAAA
* * * *
3065168 AGATTTTGTGACCGTTTGAAAAAAATGTCCCTATTTTAAACACTTAATGGCTACTGGGAGCAAAC
66 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTAATGGCCACTGGGAGCAAAC
3065233 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGTG
131 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGTG
* *
3065298 CCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCTTGGCCCCCAATC
196 CCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCTCGCCCCCCAATC
* * * *
3065363 GTCGGAACCCCTAATACCGCCGGTTAGGTTCTCCGATGATGCTCTAGTGATGGTGCCCCGGGTGA
261 GTCGGAACCCCTAATACCGCCGGTTAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGAGTCA
* *
3065428 AAAAAAATGTGGCAACAGCACATGCTCGAGCCCAGCATGTGCACCGTGGCTCAAAATCAAACTTC
326 AAAAAAATATGGCAACAGCACATGCTCAAGCCCAGCATGTGCACCGTGGCTCAAAATCAAACTTC
** *
3065493 GGCCAAGGCCTGGACCATCATGGCACATGATGGCGCAAGGTGATGGCACATGCATCGACCATCAT
391 GGCCAAGGCCTCAACCATCATGGCACATGATGGCACAAGGTGATGGCACATGCATCGACCATCAT
* * *
3065558 CGGCACAGGCTGCCCTTTGGAACGGGCACTTGCCTCGACCGCCATTGGCACAAGCTAGGCCCTGG
456 CGGCACAGGCTGCCCTTTGGAAC-GCCACTTGCCTCAACCGCCATCGGCACAAGCTAGGCCCTGG
3065623 TATGGACGGTTGCCTCGATATCCATTGGC
520 TATGGACGGTTGCCTCGATATCCATTGGC
* * **
3065652 ACATGATCCTT-GTATTTTTGTTGGCACGCAC-GAACAAATTCAGCTAAAAACAGGAAGTGGAAA
1 ACATGATCCTTGGTATTTTTGTTGGCACACACAAAACAAATTCAGCTAAAAACACCAAGTGGAAA
3065715 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCCACTGGGAGCAAA
66 AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACAC-TTAATGGCCACTGGGAGCAAA
*
3065780 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG-
130 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGT
* *
3065844 GTCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCTCGACCCCCCC
195 GCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCTCG--CCCCCC
* * *
3065909 AATCGTCGGAACCCC-AATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGGCT-ATGGTGCCCCG
257 AATCGTCGGAACCCCTAATACCGCCGGTTAGGTTCTCCGACGATGCTCCAG-TGATGGTGCCCCG
* * **
3065972 AG-CAAAACAAATATGGCACCAGCACATGCTCAAGCCCAGCATGTGCACCGTGGCTCAAAATTGA
321 AGTCAAAAAAAATATGGCAACAGCACATGCTCAAGCCCAGCATGTGCACCGTGGCTCAAAATCAA
* *
3066036 ACTTCGGCCAAGGCTTCAACCATCAATGGCACATGATGGCACATGGTGATGGCACATGCATCGAC
386 ACTTCGGCCAAGGCCTCAACCATC-ATGGCACATGATGGCACAAGGTGATGGCACATGCATCGAC
* * *
3066101 CATCATCGGCACAGGTTGCCCTTTGGTAA-GCCACTTGCCTCAACCGCCATCGGCATAAGCTGGG
450 CATCATCGGCACAGGCTGCCCTTTGG-AACGCCACTTGCCTCAACCGCCATCGGCACAAGCTAGG
3066165 CCCTG
514 CCCTG
3066170 ATACGGGCTA
Statistics
Matches: 472, Mismatches: 39, Indels: 15
0.90 0.07 0.03
Matches are distributed among these distances:
547 91 0.19
548 242 0.51
549 116 0.25
550 23 0.05
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.22
Consensus pattern (548 bp):
ACATGATCCTTGGTATTTTTGTTGGCACACACAAAACAAATTCAGCTAAAAACACCAAGTGGAAA
AGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAAACACTTAATGGCCACTGGGAGCAAAC
CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGTG
CCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCTCGCCCCCCAATC
GTCGGAACCCCTAATACCGCCGGTTAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGAGTCA
AAAAAAATATGGCAACAGCACATGCTCAAGCCCAGCATGTGCACCGTGGCTCAAAATCAAACTTC
GGCCAAGGCCTCAACCATCATGGCACATGATGGCACAAGGTGATGGCACATGCATCGACCATCAT
CGGCACAGGCTGCCCTTTGGAACGCCACTTGCCTCAACCGCCATCGGCACAAGCTAGGCCCTGGT
ATGGACGGTTGCCTCGATATCCATTGGC
Found at i:3066719 original size:26 final size:26
Alignment explanation
Indices: 3066681--3066733 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3066671 CTGGTCTGAT
* *
3066681 CTTAGACTGGGAATGAGCTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
3066707 CTTAGAGTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3066733 C
1 C
3066734 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3067075 original size:26 final size:26
Alignment explanation
Indices: 3067037--3067089 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3067027 CTGGTCCAAT
* *
3067037 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3067063 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3067089 C
1 C
3067090 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3068864 original size:26 final size:26
Alignment explanation
Indices: 3068828--3068880 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3068818 CCGGTTCGAT
*
3068828 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3068854 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3068880 C
1 C
3068881 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3071099 original size:26 final size:26
Alignment explanation
Indices: 3071070--3071122 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3071060 CCCTTCCAAT
* * *
3071070 CTTAGACTGGGAATGGACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3071096 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3071122 C
1 C
3071123 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3071452 original size:26 final size:26
Alignment explanation
Indices: 3071402--3071454 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3071392 CCGGACTGAT
* * *
3071402 CTTAGACTAGGAATGATCTCTGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
*
3071428 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
3071454 C
1 C
3071455 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:3071678 original size:333 final size:328
Alignment explanation
Indices: 3070922--3071829 Score: 945
Period size: 332 Copynumber: 2.7 Consensus size: 328
3070912 CTGATTGTCA
* * * * * *
3070922 CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACAGGCGTTGAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
** * * * * ** * *
3070987 CGATTGGAGAGGTAGGATGTGCAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTACTGTTGA
66 CGA-CCGAGAGGTAGAATGTGCAAGCTGGGGATCGACCTGGTCCCCCTCTACGTGCTGCTGTCGA
** *
3071052 TCCCGCTGCCCTTCCAATCTTAGACTGGGAATGGACTTCGTATGCTTAGACTAGGAATGAACTCC
130 TCCCGCT-CCGGTCCAATCTTAGACTGGGAAT-GACTT-GTATGCTTAGACTGGGAATGAACTCC
* * * * * *
3071117 GTATGCCTAAGTTAACCTATGAAATGAGCGTGTGGGCACTGAGCCGATCGGAGGGCATAATGCGC
192 GTATGCCTAAGTTAACCCACGAAATGAGCATGCGGGCACTGAGCCGACCAGAGGGCATAATGCGC
*
3071182 AAGTCAGGGATCGACCCAATTTCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCG
257 AAGTCAGGGATCGACCCAATTCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCG
3071247 GCTAGGG
322 GCTAGGG
* * * * * * * * *
3071254 CTTAGACATGAAATGAACTCCTTATGGCTACGCCAACCCACGAAACGAGCATGCTGGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
* * *
3071319 CGACCGTAGAGGCAGAATGTGCAAGCTGGGGATCGATCTGATCCCCCTCTACGTGCTGCTGTCGA
66 CGACCG-AGAGGTAGAATGTGCAAGCTGGGGATCGACCTGGTCCCCCTCTACGTGCTGCTGTCGA
* ** * *
3071384 TCCCGCTACCGGACTGATCTTAGACTAGGAATGATCTCTGTATGCTTAGACTGGGAATAAACTCC
130 TCCCGCT-CCGGTCCAATCTTAGACTGGGAATGA-CT-TGTATGCTTAGACTGGGAATGAACTCC
* * * * *
3071449 GTATGCCTAAGTTAACCCACGAAACGAGCATGCGTGCATTGAGCTGGCCAGAGAGGCATAATGCG
192 GTATGCCTAAGTTAACCCACGAAATGAGCATGCGGGCACTGAGCCGACCAGAG-GGCATAATGCG
* * * * *** * * * *
3071514 TAAG-CCGTGGATTGGCCTGGTTCCCCTCTGCGTGCTGTCGGTCCCGTTGCCACAACCCTCGGTC
256 CAAGTCAG-GGATCGACCCAATTCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTC
* *
3071578 TGGCTGGGG
320 CGGCTAGGG
* *
3071587 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAGCCCATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
* * * * *
3071652 CGACCAGAGAGGTAGAATGCGCAAGCTGGGGATTGGCCTGGTCCCCTGCATGCTGCCGATCCTGC
66 CGACC-GAGAGGTAGAATGTGCAAGCTGGGGATCGACCTGGTCCCC--C-T-CT-ACG-TGCTGC
* * *
3071717 TGTCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGGA
124 TGTCG-ATCCC--GCTCCGGTCCAATCTTAGACTGGGAATG-AC-TTGTATGCTTAGACTGGGAA
* * *
3071782 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACT
184 TGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCATGCGGGCACT
3071830 CAGTCAGCTA
Statistics
Matches: 465, Mismatches: 94, Indels: 25
0.80 0.16 0.04
Matches are distributed among these distances:
331 3 0.01
332 195 0.42
333 161 0.35
334 1 0.00
335 1 0.00
336 1 0.00
337 2 0.00
338 2 0.00
339 10 0.02
340 4 0.01
341 81 0.17
342 4 0.01
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (328 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAGC
CGACCGAGAGGTAGAATGTGCAAGCTGGGGATCGACCTGGTCCCCCTCTACGTGCTGCTGTCGAT
CCCGCTCCGGTCCAATCTTAGACTGGGAATGACTTGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTTAACCCACGAAATGAGCATGCGGGCACTGAGCCGACCAGAGGGCATAATGCGCAAGT
CAGGGATCGACCCAATTCCCCTCTACGTGCTGTCGGTCCCGCTACCACAACCCTCAGTCCGGCTA
GGG
Found at i:3071793 original size:26 final size:26
Alignment explanation
Indices: 3071743--3071795 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3071733 CCGGTCCAAT
**
3071743 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3071769 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3071795 C
1 C
3071796 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3072815 original size:90 final size:89
Alignment explanation
Indices: 3072690--3072936 Score: 246
Period size: 90 Copynumber: 2.7 Consensus size: 89
3072680 TGATGGCATA
* * * * * *
3072690 TGCATCGACCATCATCGGCACAGGCTACCCTTTGGTATGGGCACTTGCCTCGACCACCATCGGTA
1 TGCATCGAACACCATCGACACATGCTACCC-TTGGTACGGGCACTTGCCTCGACCACCATCGGCA
*
3072755 CAAGCTGGGCC-C-GAGTGCAGACGGT
65 CAAGAT-GGCCTCTG-GTGCAGACGGT
* * ** * * * *
3072780 TGCCTTGATTACCATCGACACATGCTGACCCTTGGTGCGGGCATTTGCCTCGACTACCATCGACA
1 TGCATCGAACACCATCGACACATGCT-ACCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCA
*
3072845 CAAGATGGCCTCTGGTGCAGGCGGT
65 CAAGATGGCCTCTGGTGCAGACGGT
* * * **
3072870 TGCATCGAACACCATCGACACATGCTAGGCCGTGGTACAGGCTGTTGCCTCGACCACCATCGGCA
1 TGCATCGAACACCATCGACACATGCTA-CCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCA
3072935 CA
65 CA
3072937 TGCCGAGCCC
Statistics
Matches: 126, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
89 5 0.04
90 116 0.92
91 5 0.04
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (89 bp):
TGCATCGAACACCATCGACACATGCTACCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCAC
AAGATGGCCTCTGGTGCAGACGGT
Found at i:3072937 original size:45 final size:45
Alignment explanation
Indices: 3072734--3072939 Score: 150
Period size: 45 Copynumber: 4.6 Consensus size: 45
3072724 GTATGGGCAC
** * * *
3072734 TTGCCTCGACCACCATCGGTACAAGCTGGGCC-C-GAGTGCAGACGG
1 TTGCCTCGACCACCATCGACACATGCT-GGCCTCTG-GTACAGGCGG
* ** * * * **
3072779 TTGCCTTGATTACCATCGACACATGCTGACC-CTTGGTGCGGGCAT
1 TTGCCTCGACCACCATCGACACATGCTGGCCTC-TGGTACAGGCGG
* * * *
3072824 TTGCCTCGACTACCATCGACACAAGATGGCCTCTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACATGCTGGCCTCTGGTACAGGCGG
* * * *
3072869 TTGCATCGAACACCATCGACACATGCTAGGCC-GTGGTACAGGCTG
1 TTGCCTCGACCACCATCGACACATGCT-GGCCTCTGGTACAGGCGG
*
3072914 TTGCCTCGACCACCATCGGCACATGC
1 TTGCCTCGACCACCATCGACACATGC
3072940 CGAGCCCCCG
Statistics
Matches: 127, Mismatches: 30, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
44 4 0.03
45 117 0.92
46 6 0.05
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACATGCTGGCCTCTGGTACAGGCGG
Found at i:3073425 original size:25 final size:26
Alignment explanation
Indices: 3073391--3073442 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3073381 CCGGTCTGAT
3073391 CTTAGACT-GGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
3073416 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
3073442 C
1 C
3073443 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:3073787 original size:26 final size:26
Alignment explanation
Indices: 3073739--3073798 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
3073729 CCTTGATCCG
3073739 ATCCG-ATG-TTAGACTGGGAATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
* *
3073763 ATCTGTATGCTTAGACTGGGGATGAA
1 ATCCGTATGCTTAGACTGGGAATGAA
*
3073789 CTCCGTATGC
1 ATCCGTATGC
3073799 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTGGGAATGAA
Found at i:3074899 original size:45 final size:45
Alignment explanation
Indices: 3074744--3074900 Score: 154
Period size: 45 Copynumber: 3.5 Consensus size: 45
3074734 GTACGGGCAC
* * * * * **
3074744 TTGCCTCGACCGCCATCGGCACAAGTTGGGCCCTAGTACGAACGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
* * * * * * * *
3074789 TTGCCTTGATCACCATTGACACATGCTGGCCCTTGGTGC-GGCGA
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
*
3074833 TTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
*
3074878 TTGTCTCGACCACCATCGGCACA
1 TTGCCTCGACCACCATCGGCACA
3074901 TGCCGAGCCC
Statistics
Matches: 88, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 35 0.40
45 53 0.60
ACGTcount: A:0.18, C:0.33, G:0.28, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGGGCGG
Found at i:3074901 original size:89 final size:89
Alignment explanation
Indices: 3074705--3074903 Score: 204
Period size: 89 Copynumber: 2.2 Consensus size: 89
3074695 GGCACATGCA
* * * * *
3074705 TCGACCATCATCGGCACAGGCTACCTTTGGTACGGGCACTTGCCTCGACCGCCATCGGCACAAGT
1 TCGACCACCATCGGCACATGCTACCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCACAAGA
*
3074770 TGGGCCCTAGTACGAACGGTTGCC
66 TGGCCCCTAGTACGAACGGTTGCC
* * * * * * *
3074794 TTGATCACCATTGACACATGCTGGCCCTTGGTGC-GGCGA-TTGCCTCGACCACCATTGGCACAA
1 TCGACCACCATCGGCACATGCT-ACCCTTGGTACGGGC-ACTTGCCTCGACCACCATCGGCACAA
* * ** *
3074857 GATGGCCCCTGGTGCGGGCGGTTGTC
64 GATGGCCCCTAGTACGAACGGTTGCC
3074883 TCGACCACCATCGGCACATGC
1 TCGACCACCATCGGCACATGC
3074904 CGAGCCCTGG
Statistics
Matches: 86, Mismatches: 22, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
89 77 0.90
90 9 0.10
ACGTcount: A:0.18, C:0.33, G:0.28, T:0.21
Consensus pattern (89 bp):
TCGACCACCATCGGCACATGCTACCCTTGGTACGGGCACTTGCCTCGACCACCATCGGCACAAGA
TGGCCCCTAGTACGAACGGTTGCC
Found at i:3074912 original size:45 final size:43
Alignment explanation
Indices: 3074744--3074918 Score: 136
Period size: 45 Copynumber: 4.0 Consensus size: 43
3074734 GTACGGGCAC
* * * * * * * *
3074744 TTGCCTCGACCGCCATCGGCACAAGTTGGGCCCTAGTACGAACGG
1 TTGCCTCGACCACCATTGGCACATGCT-GGCCCTGGTGCG-GCGA
* * *
3074789 TTGCCTTGATCACCATTGACACATGCTGGCCCTTGGTGCGGCGA
1 TTGCCTCGACCACCATTGGCACATGCTGGCCC-TGGTGCGGCGA
* * *
3074833 TTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGCGGGCGG
1 TTGCCTCGACCACCATTGGCACATGCTGG-CCCTGGTGC-GGCGA
* * *
3074878 TTGTCTCGACCACCATCGGCACATGCCGAGCCCTGGT-CGGC
1 TTGCCTCGACCACCATTGGCACATGCTG-GCCCTGGTGCGGC
3074919 CCCCGAAATA
Statistics
Matches: 104, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
43 3 0.03
44 38 0.37
45 62 0.60
46 1 0.01
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.21
Consensus pattern (43 bp):
TTGCCTCGACCACCATTGGCACATGCTGGCCCTGGTGCGGCGA
Found at i:3076554 original size:23 final size:23
Alignment explanation
Indices: 3076528--3076578 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
3076518 GTCGAGGCAA
3076528 GTGCCCGTACCAAAGGGCAGCCT
1 GTGCCCGTACCAAAGGGCAGCCT
3076551 GTGCCCGTACCAAAGGGCAGCCT
1 GTGCCCGTACCAAAGGGCAGCCT
3076574 GTGCC
1 GTGCC
3076579 GATGATGGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.20, C:0.35, G:0.31, T:0.14
Consensus pattern (23 bp):
GTGCCCGTACCAAAGGGCAGCCT
Found at i:3076616 original size:13 final size:13
Alignment explanation
Indices: 3076598--3076630 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
3076588 CGATGCAGGT
3076598 GCCATCACCATGC
1 GCCATCACCATGC
3076611 GCCATCACCATGC
1 GCCATCACCATGC
3076624 GCCATCA
1 GCCATCA
3076631 TGTGCCATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.24, C:0.45, G:0.15, T:0.15
Consensus pattern (13 bp):
GCCATCACCATGC
Done.