Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167971.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_23, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19268551
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 68000 characters in sequence are not A, C, G, or T
File 28 of 120
Found at i:3078215 original size:45 final size:45
Alignment explanation
Indices: 3078151--3078265 Score: 151
Period size: 45 Copynumber: 2.6 Consensus size: 45
3078141 CGGGGCTCAT
* *
3078151 CATGTGCCGATGGTGGTTGAGGCAACCGCATGCACCAC-GACCCAG
1 CATGTGCCGATGGTGGTTGAGGCAACCGCACGCACCACAG-CCCAA
* *
3078196 CATGTGCCGATGGTGGTTGAGGTAACCGCCCGCACCACAGCCCAA
1 CATGTGCCGATGGTGGTTGAGGCAACCGCACGCACCACAGCCCAA
* * *
3078241 CTTGTGCCGATGGTGATCGAGGCAA
1 CATGTGCCGATGGTGGTTGAGGCAA
3078266 GTGCCCATAC
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 60 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.30, G:0.31, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTTGAGGCAACCGCACGCACCACAGCCCAA
Found at i:3078325 original size:13 final size:13
Alignment explanation
Indices: 3078307--3078342 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
3078297 GATGGTCGAT
3078307 GCATGTGCCATTA
1 GCATGTGCCATTA
3078320 GCATGTGCCA-T-
1 GCATGTGCCATTA
3078331 -CATGTGCCATTA
1 GCATGTGCCATTA
3078343 ATGGTCGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 9 0.43
11 1 0.05
12 1 0.05
13 10 0.48
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (13 bp):
GCATGTGCCATTA
Found at i:3079594 original size:26 final size:26
Alignment explanation
Indices: 3079564--3079616 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3079554 GTTGACTTAG
*
3079564 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3079590 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3079616 G
1 G
3079617 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3080131 original size:45 final size:45
Alignment explanation
Indices: 3080067--3080171 Score: 147
Period size: 45 Copynumber: 2.3 Consensus size: 45
3080057 CATATACCGG
3080067 TGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCGA
* * ** * *
3080112 TGGTGTTCGATGCAACCGCCTGCACCAGGGCCCAGCTTGTGCCGA
1 TGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCGA
*
3080157 TGGCGGTCGAGGCAA
1 TGGTGGTCGAGGCAA
3080172 GTGCCCGTAC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.15
Consensus pattern (45 bp):
TGGTGGTCGAGGCAACCGCCCACACCACGGCCCAGCATGTGCCGA
Found at i:3081147 original size:26 final size:26
Alignment explanation
Indices: 3081111--3081163 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3081101 GTTGACTTAG
3081111 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
3081137 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
3081163 G
1 G
3081164 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:3081498 original size:26 final size:25
Alignment explanation
Indices: 3081469--3081518 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
3081459 TGACTTAGGG
* *
3081469 ATACGGGGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCAAGT-TAAGC
*
3081495 ATACGGATTTCATTCCAAGTTAAG
1 ATACGGAGTTCATTCCAAGTTAAG
3081519 ATTAGACCAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (25 bp):
ATACGGAGTTCATTCCAAGTTAAGC
Found at i:3082029 original size:45 final size:45
Alignment explanation
Indices: 3081959--3082163 Score: 241
Period size: 45 Copynumber: 4.6 Consensus size: 45
3081949 CGGGGCTCGA
*
3081959 CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAG
* * * * * *
3082004 CATGTGCCAATGGTGTTCGATGCAACCA-CCCGTACCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAA-CAGCCCGCACCAAGGCCCAG
* ** *
3082049 CTTGTGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAG
* * * * *
3082094 CATGTGCCAATGATGATCGAGGCAACCGCCTGCACCAAGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAG
*
3082139 CTTGTGCCGATGGTGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
3082164 GTGCCCCTAC
Statistics
Matches: 131, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
45 129 0.98
46 2 0.02
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCAAGGCCCAG
Found at i:3082119 original size:90 final size:90
Alignment explanation
Indices: 3081961--3082198 Score: 309
Period size: 90 Copynumber: 2.6 Consensus size: 90
3081951 GGGCTCGACA
* * * * * *
3081961 TGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAGCATGTGCCAATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCAGCATGTGCCAATGATGATCGAGG
* * *
3082026 CAACCACCCGTACCAAGGGCCATCT
66 CAACCACCCGCACCAAGGCCCAGCT
*
3082051 TGTGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGCCAGCATGTGCCAATGATGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCAGCATGTGCCAATGATGATCGAGG
* *
3082116 CAACCGCCTGCACCAAGGCCCAGCT
66 CAACCACCCGCACCAAGGCCCAGCT
* * *
3082141 TGTGCCGATGGTGGTCGAGGCAAGTGCCC-CTACCAAAGGG-CAGCCTGTGCCGATGATG
1 TGTGCCGATGGTGGTCGAGGCAACTGCCCGC-ACC-AAGGGCCAGCATGTGCCAATGATG
3082199 GTCAATGCAT
Statistics
Matches: 131, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
89 1 0.01
90 125 0.95
91 5 0.04
ACGTcount: A:0.21, C:0.31, G:0.32, T:0.17
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACTGCCCGCACCAAGGGCCAGCATGTGCCAATGATGATCGAGG
CAACCACCCGCACCAAGGCCCAGCT
Found at i:3082176 original size:45 final size:44
Alignment explanation
Indices: 3081959--3082201 Score: 218
Period size: 45 Copynumber: 5.4 Consensus size: 44
3081949 CGGGGCTCGA
* *
3081959 CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCC-CACCAAGGCCCAG
* * * * * * *
3082004 CATGTGCCAATGGTGTTCGATGCAACCACCCGTACCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCC-CACCAAGGCCCAG
* ** *
3082049 CTTGTGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGGGCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCC-CACCAAGGCCCAG
* * * *
3082094 CATGTGCCAATGATGATCGAGGCAACCGCCTGCACCAAGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCC-CCACCAAGGCCCAG
* ** *
3082139 CTTGTGCCGATGGTGGTCGAGGCAAGTGCCCCTACCAAAGG-GCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCCC-ACC-AAGGCCCAG
* *
3082184 CCTGTGCCGATGATGGTC
1 CATGTGCCGATGGTGGTC
3082202 AATGCATGTG
Statistics
Matches: 159, Mismatches: 36, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
44 1 0.01
45 154 0.97
46 4 0.03
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (44 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCCCACCAAGGCCCAG
Found at i:3082201 original size:135 final size:135
Alignment explanation
Indices: 3081959--3082201 Score: 317
Period size: 135 Copynumber: 1.8 Consensus size: 135
3081949 CGGGGCTCGA
* * * * *
3081959 CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAGCATGTGCCAATGGTGTTCGA
1 CATGTGCCAATGATGATCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCAATGGTGGTCGA
* * * * *
3082024 TGCAACCACCCGTACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGG
66 GGCAACCACCCCTACCAAGGGCCAGCCTGTGCCGATGATGGTCGAGGCAATTGCCCGCACCAAGG
3082089 GCCAG
131 GCCAG
* * * *
3082094 CATGTGCCAATGATGATCGAGGCAACCGCCTGCACCAAGGCCCAGCTTGTGCCGATGGTGGTCGA
1 CATGTGCCAATGATGATCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCAATGGTGGTCGA
***
3082159 GGCAAGTGCCCCTACCAAAGGG-CAGCCTGTGCCGATGATGGTC
66 GGCAACCACCCCTACC-AAGGGCCAGCCTGTGCCGATGATGGTC
3082202 AATGCATGTG
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
135 85 0.94
136 5 0.06
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (135 bp):
CATGTGCCAATGATGATCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCAATGGTGGTCGA
GGCAACCACCCCTACCAAGGGCCAGCCTGTGCCGATGATGGTCGAGGCAATTGCCCGCACCAAGG
GCCAG
Found at i:3082233 original size:135 final size:135
Alignment explanation
Indices: 3081959--3082251 Score: 304
Period size: 135 Copynumber: 2.2 Consensus size: 135
3081949 CGGGGCTCGA
* * * *
3081959 CATGTGCCGATGGTGGTCGAGGCAACAGCCCGCACCACGGCCCAGCATGTGCCAATGGTGTTCGA
1 CATGTGCCAATGATGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCAATGGTGGTCGA
* * * * * * *
3082024 TGCAACCACCCGTACCAAGGGCCATCTTGTGCCGATGGTGGTCGAGGCAATTGCCCGCACCAAGG
66 GGCAACCACCCCTACCAAGGGCCAGCCTGTGCCGATGATGGTCAAGGCAATTGCCAGCACCAAGG
*
3082089 GCCAG
131 GACAG
* * * * *
3082094 CATGTGCCAATGATGATCGAGGCAACCGCCTGCACCAAGGCCCAGCTTGTGCCGATGGTGGTCGA
1 CATGTGCCAATGATGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCAATGGTGGTCGA
*** * *
3082159 GGCAAGTGCCCCTACCAAAGGG-CAGCCTGTGCCGATGATGGTCAATGC-ATGTGCCATCACCAT
66 GGCAACCACCCCTACC-AAGGGCCAGCCTGTGCCGATGATGGTCAAGGCAAT-TGCCAGCACCA-
* *
3082222 A-TGACAT
128 AGGGACAG
* *
3082229 CATGTGCCATTAATGGTCGAGGC
1 CATGTGCCAATGATGGTCGAGGC
3082252 CTTCGCCAAA
Statistics
Matches: 128, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
134 2 0.02
135 120 0.94
136 6 0.05
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (135 bp):
CATGTGCCAATGATGGTCGAGGCAACAGCCCGCACCAAGGCCCAGCATGTGCCAATGGTGGTCGA
GGCAACCACCCCTACCAAGGGCCAGCCTGTGCCGATGATGGTCAAGGCAATTGCCAGCACCAAGG
GACAG
Found at i:3083997 original size:45 final size:45
Alignment explanation
Indices: 3083932--3084037 Score: 160
Period size: 45 Copynumber: 2.4 Consensus size: 45
3083922 TTGACATGTG
* *
3083932 CCGATGGTGGTCGAGGCAACCGTCC-GCACCAGGGGCCATCTTGTA
1 CCGATGGTGGTCGAGGCAACCG-CCTGCACCAGGGCCCAGCTTGTA
* *
3083977 TCGATGGTGGTCGAGGCAACCGCCTGCACCAGGGCCCAGCTTGTG
1 CCGATGGTGGTCGAGGCAACCGCCTGCACCAGGGCCCAGCTTGTA
3084022 CCGATGGTGGTCGAGG
1 CCGATGGTGGTCGAGG
3084038 TAAGTACCCC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 2 0.04
45 53 0.96
ACGTcount: A:0.16, C:0.29, G:0.37, T:0.18
Consensus pattern (45 bp):
CCGATGGTGGTCGAGGCAACCGCCTGCACCAGGGCCCAGCTTGTA
Found at i:3084990 original size:26 final size:26
Alignment explanation
Indices: 3084960--3085012 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3084950 GTTGACTTAG
*
3084960 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* * *
3084986 GCATATAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
3085012 G
1 G
3085013 ATCGGATCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:3085462 original size:26 final size:26
Alignment explanation
Indices: 3085426--3085478 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3085416 GTTGACTTAG
3085426 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
3085452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3085478 G
1 G
3085479 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3085601 original size:196 final size:196
Alignment explanation
Indices: 3085256--3085649 Score: 459
Period size: 196 Copynumber: 2.0 Consensus size: 196
3085246 GTTGACTTAG
* ** ***
3085256 GCATACGAAGTTCATTCCCAGTCTGAGATCGGACCAGATTGAAGGTTGCAGCAGCAGGACCCGTA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCAGCAGCAGGACCAACA
* * * *
3085321 GCGGGATCGACAGCACGCAGAGGGGACCTGGTCGATCCCCAGCTTACGCATCCTACCTCTCTGGC
66 GCAGGATCGACAGCACGCAGAGGGGACCTGGCCGATCCCCAGCTTACGCATCCTACCTCTCCGAC
** * * *
3085386 CGGCTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCCTAGTCT
131 CGGCTGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCT-GTCT
3085450 AA
195 AA
* * * * *
3085452 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCAGGACCAACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCAGCAGCAGGACCAACA
* * * * ** * *
3085517 GTAGGATCGACAGCACGCAGGGGGGACC-GAGCCGATCCTCGGCTTGTGCATTCTGCCTCTCCGA
66 GCAGGATCGACAGCACGCAGAGGGGACCTG-GCCGATCCCCAGCTTACGCATCCTACCTCTCCGA
* * * * *
3085581 TCGGTTGAGCACCCGCACGCTCGTTCCATGGGTTGGCTTAGGCGTACGGAGTTCATTCCGTGTCT
130 CCGGCTGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCT
3085646 AA
195 AA
3085648 GC
1 GC
3085650 CCCAATCGGA
Statistics
Matches: 163, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
195 1 0.01
196 158 0.97
197 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (196 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCAGCAGCAGGACCAACA
GCAGGATCGACAGCACGCAGAGGGGACCTGGCCGATCCCCAGCTTACGCATCCTACCTCTCCGAC
CGGCTGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTA
A
Found at i:3085808 original size:26 final size:26
Alignment explanation
Indices: 3085778--3085831 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
3085768 TGGGTTGACT
*
3085778 TAGGCATATAGAGTTCATTCCCAGTC
1 TAGGCATATAGAGTTCATTCCCAATC
*
3085804 TAGGCATATGGAGTTCATTCCCAATC
1 TAGGCATATAGAGTTCATTCCCAATC
3085830 TA
1 TA
3085832 AGATCGGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (26 bp):
TAGGCATATAGAGTTCATTCCCAATC
Found at i:3087759 original size:26 final size:26
Alignment explanation
Indices: 3087730--3087782 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
3087720 GTTGACTTAG
3087730 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
3087756 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
3087782 G
1 G
3087783 ATCATACAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:3090141 original size:45 final size:45
Alignment explanation
Indices: 3089961--3090165 Score: 166
Period size: 45 Copynumber: 4.6 Consensus size: 45
3089951 CGGGGCTCGA
* * * ** * *
3089961 CATGTACCGATGGTGGTTGAGGCAACCGCCCGCACCACTGCCCAA
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAAGGGCCAG
** * * *
3090006 CATGTGCCGACAGTGTTCGATGCAACCG-CTCGCACCAAGGGCCAT
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCT-GCACCAAGGGCCAG
* * *
3090051 CTTGTGCCAATGGTGGTCGAGGCAATCG-CT-CACACTAAGGGCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCTGCAC-C-AAGGGCCAG
* *
3090096 CATGTGCCGATGGTGATCGAGGCAACTGCCTGCACC-AGGGCCCAG
1 CATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAAGGG-CCAG
* * *
3090141 CTTGTGTCGATGGCGGTCGAGGCAA
1 CATGTGCCGATGGTGGTCGAGGCAA
3090166 GTACCCGTAC
Statistics
Matches: 126, Mismatches: 28, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
43 3 0.02
44 6 0.05
45 111 0.88
46 3 0.02
47 3 0.02
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAACCGCCTGCACCAAGGGCCAG
Found at i:3091145 original size:26 final size:26
Alignment explanation
Indices: 3091109--3091159 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
3091099 TGACTTAGAA
*
3091109 ATACAGAGTTC-ATCCTTAGTCTAAGC
1 ATACAGAGTTCAATCC-TAGCCTAAGC
*
3091135 ATACGGAGTTCAATCCTAGCCTAAG
1 ATACAGAGTTCAATCCTAGCCTAAG
3091160 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCAATCCTAGCCTAAGC
Found at i:3092132 original size:45 final size:45
Alignment explanation
Indices: 3091964--3092139 Score: 131
Period size: 45 Copynumber: 3.9 Consensus size: 45
3091954 AACCGGGGTT
* * * * * * * *
3091964 CAGCATGTGCTGATAGTGGTCGAGGCAACCGTCCACACCACGGCC
1 CAGCTTGTGCCGATGGTGGTTGAGGCAACTGCCCGCACCAAGGCC
* * * * *
3092009 CAGCATGTGCCAATGGT-GTTCGATGCAACTGCTCACACCAACGG-C
1 CAGCTTGTGCCGATGGTGGTT-GAGGCAACTGCCCGCACCAA-GGCC
* * * ** *
3092054 CATCTTGTACCGGTGGTGGTCAAGGTAACTGCCCGCACCAAGGCC
1 CAGCTTGTGCCGATGGTGGTTGAGGCAACTGCCCGCACCAAGGCC
* *
3092099 CAGCTTGTGCCGATGGTGGTTGAGGCAAGTGCCCGTACCAA
1 CAGCTTGTGCCGATGGTGGTTGAGGCAACTGCCCGCACCAA
3092140 AGTGTAGCTT
Statistics
Matches: 99, Mismatches: 28, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
44 4 0.04
45 91 0.92
46 4 0.04
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (45 bp):
CAGCTTGTGCCGATGGTGGTTGAGGCAACTGCCCGCACCAAGGCC
Found at i:3094418 original size:45 final size:44
Alignment explanation
Indices: 3094234--3094436 Score: 140
Period size: 45 Copynumber: 4.6 Consensus size: 44
3094224 CGGGGCTCGA
* * *
3094234 CTTGTGCCGATGGTGGTCGAGGCAACCGCCCGTACCATGGCCCAG
1 CTTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCA-GGGCCAG
* * * * ** ***
3094279 CATGTGCTGATGGTGTTCGATGCAATGGTTTGCACCAAGGGCCA-
1 CTTGTGCCGATGGTGATCGAGGCAACCGCCCGCACC-AGGGCCAG
* * * * * * * *
3094323 -TTGTGTCGATGGTGATCGAGGCAATCACCAGCACAAAAGGTCGG
1 CTTGTGCCGATGGTGATCGAGGCAACCGCCCGCAC-CAGGGCCAG
* *
3094367 CATGTGCCGATGGTGATCGAGGTAACCGCCCGCACCAGGGCCCAG
1 CTTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGG-CCAG
* *
3094412 CTTGTGCCGGTGGTGGTCGAGGCAA
1 CTTGTGCCGATGGTGATCGAGGCAA
3094437 GTGCCCGTAC
Statistics
Matches: 114, Mismatches: 39, Indels: 10
0.70 0.24 0.06
Matches are distributed among these distances:
43 28 0.25
44 3 0.03
45 82 0.72
46 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.34, T:0.20
Consensus pattern (44 bp):
CTTGTGCCGATGGTGATCGAGGCAACCGCCCGCACCAGGGCCAG
Found at i:3095773 original size:26 final size:26
Alignment explanation
Indices: 3095744--3095796 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3095734 GTTGACTTAG
* *
3095744 GCATACGGAGTGCATTCCCAGTCTAA
1 GCATACGAAGTGCATTCCCAATCTAA
*
3095770 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTGCATTCCCAATCTAA
3095796 G
1 G
3095797 ATCAGACCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTGCATTCCCAATCTAA
Found at i:3098016 original size:26 final size:26
Alignment explanation
Indices: 3097980--3098032 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3097970 GTTAACTTAG
*
3097980 GCATACGGAGTTCATCCCCAGTTTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
3098006 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
3098032 G
1 G
3098033 ATTGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:3099886 original size:26 final size:26
Alignment explanation
Indices: 3099849--3099902 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
3099839 GGGTTGACAT
3099849 AGCATACAGAGTTCATCCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
* *
3099875 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATCCCCAGTCTA
3099901 AG
1 AG
3099903 ATTGAACCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (26 bp):
AGCATACAGAGTTCATCCCCAGTCTA
Found at i:3100633 original size:45 final size:44
Alignment explanation
Indices: 3100541--3100652 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 44
3100531 GGGCTCGATA
*
3100541 TGTGTCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCATCT
1 TGTG-CGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCAACT
* * * *
3100586 TGTGCCGATGGTGGTCGAGGCAACCGCTCGCACTA-TGGCCTAACT
1 TGTG-CGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCC-AACT
* * *
3100631 TGTGCAATGGCGGTTGAGGCAA
1 TGTGCGATGGTGGTCGAGGCAA
3100653 GTGCCCATGT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 19 0.33
45 38 0.67
ACGTcount: A:0.19, C:0.27, G:0.34, T:0.21
Consensus pattern (44 bp):
TGTGCGATGGTGGTCGAGGCAACCGCCCACACCAGGGGCCAACT
Found at i:3107717 original size:196 final size:196
Alignment explanation
Indices: 3107367--3107727 Score: 472
Period size: 196 Copynumber: 1.8 Consensus size: 196
3107357 GTAGTGCACT
* * * * ** * *
3107367 CCAGTCTATGATCGGATCGGATCGAGGGTTGGGACAGTAGAACCCGTAGCAGGATCGACAGCACG
1 CCAGTCCAAGATCGGACCGGACCGAGGGTTACGACAGTAGAACCAGCAGCAGGATCGACAGCACG
* * * * ** *
3107432 TAGAGAGGGTCGGGTCGATCCCCGGCTTGTGCATCCTACCTCTCTAGCCGGTTGAGCGCCCGCAC
66 CAGAGAGGGTCAGGTCGATCCCCGGCTTGCGCATCCTACCTCTCCAGCCGACTGAGCGCCCACAC
*
3107497 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTATGCATACGGAGTTCATT
131 GCTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTATGCATACGGAGTTCATT
3107562 C
196 C
* * *
3107563 CCAGTCCAAGATCGGACCGGACCGAGGGTTACGATAGTAGGACCAGCAGCAGGATCGACAGCATG
1 CCAGTCCAAGATCGGACCGGACCGAGGGTTACGACAGTAGAACCAGCAGCAGGATCGACAGCACG
* * * * *
3107628 CCG-GAGGGATCAGGTTGATCCCCGGTTTGCGCATTCTACCTCTCCAGCCTACTGAGCGCCCACA
66 CAGAGAGGG-TCAGGTCGATCCCCGGCTTGCGCATCCTACCTCTCCAGCCGACTGAGCGCCCACA
* *
3107692 CGCTCGTTTCGTGGATTGGCTTAGGCATACGGAGTT
130 CGCTCATTTCGTGGATTGACTTAGGCATACGGAGTT
3107728 TATTCCATGT
Statistics
Matches: 138, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
195 5 0.04
196 133 0.96
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (196 bp):
CCAGTCCAAGATCGGACCGGACCGAGGGTTACGACAGTAGAACCAGCAGCAGGATCGACAGCACG
CAGAGAGGGTCAGGTCGATCCCCGGCTTGCGCATCCTACCTCTCCAGCCGACTGAGCGCCCACAC
GCTCATTTCGTGGATTGACTTAGGCATACGGAGTTCATCCCCAGTCTATGCATACGGAGTTCATT
C
Found at i:3108661 original size:26 final size:26
Alignment explanation
Indices: 3108625--3108674 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3108615 GTTGACTTAG
3108625 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
3108651 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATCCCCAGTCT
3108675 GAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:3109371 original size:45 final size:44
Alignment explanation
Indices: 3109321--3109465 Score: 130
Period size: 45 Copynumber: 3.2 Consensus size: 44
3109311 CGACATATAT
* *
3109321 CGATGGTGGTCGAGGCAATCGCCTGCACCATGACTCAGCATGTGC
1 CGATGGTGGTCGAGGCAACCGCCTGCACCAGGAC-CAGCATGTGC
* * ** * * *
3109366 CGATGGTGTTCAATGG-AACCGCCTATACCAGGGCCATCTTGTGC
1 CGATGGTGGTCGA-GGCAACCGCCTGCACCAGGACCAGCATGTGC
* * * *
3109410 CGATGGTGGTCGAGGCAACCGTCTGCACCAAGGTCCAGCTTGTGT
1 CGATGGTGGTCGAGGCAACCGCCTGCACC-AGGACCAGCATGTGC
*
3109455 CGATGGCGGTC
1 CGATGGTGGTC
3109466 AAGGTAGGTG
Statistics
Matches: 79, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
43 2 0.03
44 29 0.37
45 46 0.58
46 2 0.03
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.22
Consensus pattern (44 bp):
CGATGGTGGTCGAGGCAACCGCCTGCACCAGGACCAGCATGTGC
Found at i:3111123 original size:13 final size:13
Alignment explanation
Indices: 3111105--3111129 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3111095 ATGGTCGATG
3111105 CATGTGCCATCAC
1 CATGTGCCATCAC
3111118 CATGTGCCATCA
1 CATGTGCCATCA
3111130 TGTGCCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:3112346 original size:26 final size:26
Alignment explanation
Indices: 3112316--3112371 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
3112306 TGGGTTAACT
3112316 TAAGCATAC-GGAGTTCATTCCCAGTC
1 TAAGCAT-CTGGAGTTCATTCCCAGTC
*
3112342 TAAGCATCTGTAGTTCATTCCCAGTC
1 TAAGCATCTGGAGTTCATTCCCAGTC
3112368 TAAG
1 TAAG
3112372 ATCAGACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATCTGGAGTTCATTCCCAGTC
Found at i:3112530 original size:26 final size:26
Alignment explanation
Indices: 3112481--3112533 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3112471 GTTGACTTAG
* ***
3112481 GCATACGGAGTTCATTCTTGGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3112507 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3112533 G
1 G
3112534 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3112856 original size:26 final size:26
Alignment explanation
Indices: 3112820--3112869 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3112810 GACTTAGGCC
*
3112820 TATGGAGTTCAATCTCAGTCTAAGCA
1 TATGGAGTTCAATCCCAGTCTAAGCA
*
3112846 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCAATCCCAGTCTAAG
3112870 ATTGGACCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (26 bp):
TATGGAGTTCAATCCCAGTCTAAGCA
Found at i:3112965 original size:173 final size:171
Alignment explanation
Indices: 3112753--3113169 Score: 492
Period size: 173 Copynumber: 2.4 Consensus size: 171
3112743 CCGGTCCTCG
* * *
3112753 GCTTGTGCATTATGCCTCTCCAGCTAGCTCAGCGCCCGCACGCTCATTTCGGGGGTTGACTTAGG
1 GCTTG-GCATTATGCCTCTCCGGC-AGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * * * **
3112818 CCTATGGAGTTCAATCTCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGACAG
64 CATACGGACTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACAG
* * *
3112883 CGGGATCGCCAACAGCACGTAGAGGGGGACCGGGTCGATCCCC
129 CGGGATCGACAACAGCACGCAAAGGGGGACCGGGTCGATCCCC
* * *
3112926 AGCTTGGCATTATGCCTCTCCGGTCAGCTCAGTGCCCGCATGCTCATTTTGTGGGTTGACTTAGG
1 -GCTTGGCATTATGCCTCTCCGG-CAGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
* * * *
3112991 CATACGGACTTCATTCCCTGTCTAAGCATACGGAGTTCATTCCCAGTCTGAGATCAGACCGGCAG
64 CATACGGACTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACAG
* * **
3113056 CGGGATCGACAGCAGCACGCAAAGGGGGACCGTGTCGATCTGC
129 CGGGATCGACAACAGCACGCAAAGGGGGACCGGGTCGATCCCC
* ** * * * *
3113099 GACTTACGCATCCTGCCTCTCCGGCCGACTGAGAGCCCGCACGCTCGTTTCATGGGTTGACTTAG
1 G-CTT-GGCATTATGCCTCTCCGGCAG-CTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAG
3113164 GCATAC
63 GCATAC
3113170 AGAGTTCATT
Statistics
Matches: 206, Mismatches: 33, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
172 1 0.00
173 147 0.71
174 58 0.28
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.24
Consensus pattern (171 bp):
GCTTGGCATTATGCCTCTCCGGCAGCTCAGAGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCA
TACGGACTTCAATCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGACAGCG
GGATCGACAACAGCACGCAAAGGGGGACCGGGTCGATCCCC
Found at i:3113019 original size:26 final size:26
Alignment explanation
Indices: 3112990--3113039 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
3112980 GTTGACTTAG
*
3112990 GCATACGGACTTCATTCCCTGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
3113016 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGACTTCATTCCCAGTCT
3113040 GAGATCAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:3114142 original size:26 final size:26
Alignment explanation
Indices: 3114112--3114182 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
3114102 CTACCAAATG
3114112 GAGTTCATTCCCAGTCTAAGCATATA
1 GAGTTCATTCCCAGTCTAAGCATATA
* *
3114138 GAGTTCATCCCCAGTCTAAGCATATG
1 GAGTTCATTCCCAGTCTAAGCATATA
*
3114164 GAGTTCATTCCCAATCTAA
1 GAGTTCATTCCCAGTCTAA
3114183 TATCGAACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATATA
Found at i:3114513 original size:26 final size:26
Alignment explanation
Indices: 3114484--3114536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3114474 GGTTGACTAG
* *
3114484 GCATACAAAGTTTATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
3114510 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
3114536 G
1 G
3114537 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:3115120 original size:45 final size:44
Alignment explanation
Indices: 3114979--3115129 Score: 133
Period size: 45 Copynumber: 3.4 Consensus size: 44
3114969 GGGCTCGGCA
* * * * ** *
3114979 TGTGCCAATGGTGGTCGAGGCAACCACCCGCACCATGACCCAGCA
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-CAAGGGCCAGCT
** * *
3115024 TGTGCCGATGGTGGTCGAGGTGACCGCCCGTACTAGGGCCCAACT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACAAGGG-CCAGCT
* **
3115069 TATGCCGATGGTGGTCGAGGCAAGTGCCCGTACCAAAGGG-CAGCT
1 TGTGCCGATGGTGGTCGAGGCAACCGCCCGTA-C-AAGGGCCAGCT
3115114 TGTGCCGATGGTGGTC
1 TGTGCCGATGGTGGTC
3115130 AATGCATATG
Statistics
Matches: 84, Mismatches: 19, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
44 2 0.02
45 77 0.92
46 1 0.01
47 4 0.05
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (44 bp):
TGTGCCGATGGTGGTCGAGGCAACCGCCCGTACAAGGGCCAGCT
Found at i:3116698 original size:147 final size:148
Alignment explanation
Indices: 3116324--3116701 Score: 490
Period size: 148 Copynumber: 2.6 Consensus size: 148
3116314 GCGACTTGTA
** *
3116324 CATTATGCCTCTCC-AGTCGGCTCAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCACACG
1 CATTATGCCTCTCCGA-TCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCACACG
** *
3116388 GAGTTCATTCCCAGTCTAAGATCGGACCGACAGCGGGATCGGCAGCAACACGCAGAGGGGGACCG
65 GAGTTCATTCCCAGTCTAAGATCGGACCGACAGCGGGATCAACAGCAACACGCAGAGGGGGACCA
* *
3116453 GGCCGAACCTCAGCTTGAG
130 GACCGAACCACAGCTTGAG
* ** * * * * * *
3116472 TATCCTACCTCTCCGGTTGGCTGAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCACACGA
1 CATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCACACGG
* * *
3116537 AGTTCATTCCCAGTCTAAGATCGGACCGACAGTGGGATCAACAGCAGCACGCAGAGGGGGATCAG
66 AGTTCATTCCCAGTCTAAGATCGGACCGACAGCGGGATCAACAGCAACACGCAGAGGGGGACCAG
* *
3116602 ACCGATCCAC-GCTTGCG
131 ACCGAACCACAGCTTGAG
* * * *
3116619 CATTATGCCTCTCCGATCAGCTCAGTGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGG
1 CATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCACACGG
*
3116684 AGTTCATTCTCAGTCTAA
66 AGTTCATTCCCAGTCTAA
3116702 CCCCCAACCA
Statistics
Matches: 193, Mismatches: 36, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
147 75 0.39
148 118 0.61
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (148 bp):
CATTATGCCTCTCCGATCGGCTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCACACGG
AGTTCATTCCCAGTCTAAGATCGGACCGACAGCGGGATCAACAGCAACACGCAGAGGGGGACCAG
ACCGAACCACAGCTTGAG
Found at i:3117170 original size:87 final size:87
Alignment explanation
Indices: 3117020--3117195 Score: 194
Period size: 87 Copynumber: 2.0 Consensus size: 87
3117010 GTGCCGATGG
* ** * *
3117020 TGGTCGAGGCAACCATCCGCACCACGGCCCAGCATGTGTTGATGTTGTTCGATGCAACCGCCTGC
1 TGGTCGAGGCAACCAGCCGCACCACGGCCCAGCATGTGCCGATGTAGTTCGAGGCAACCGCCTGC
*
3117085 ACC-AAGGGCCATCTTGTGCCGA
66 ACCAAAGGG-CAGCTTGTGCCGA
* * * * **
3117107 TGGTCGAGGCGACCAGCCGTACCAGGGCCCAGCTTGTGCCGATGGTAG-TCGAGGCAAGTGCCTG
1 TGGTCGAGGCAACCAGCCGCACCACGGCCCAGCATGTGCCGAT-GTAGTTCGAGGCAACCGCCTG
* *
3117171 TACCAAAGGGCAGCTTGTGCTGA
65 CACCAAAGGGCAGCTTGTGCCGA
3117194 TG
1 TG
3117196 ATGGTCAATG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
87 65 0.89
88 8 0.11
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (87 bp):
TGGTCGAGGCAACCAGCCGCACCACGGCCCAGCATGTGCCGATGTAGTTCGAGGCAACCGCCTGC
ACCAAAGGGCAGCTTGTGCCGA
Found at i:3117866 original size:26 final size:26
Alignment explanation
Indices: 3117830--3117882 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3117820 GTTGACTTAG
3117830 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
3117856 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3117882 G
1 G
3117883 ATCGGAATGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3118031 original size:45 final size:45
Alignment explanation
Indices: 3117938--3118038 Score: 116
Period size: 45 Copynumber: 2.2 Consensus size: 45
3117928 CGGCCCAGCA
* * * *
3117938 TGTGCCGATGGTGTTCGATGCAACCGCCTGCACCTAGGGCCATGT
1 TGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCTAGGGCCATGT
* *
3117983 TGTGGTGATGGTGGTCGAGGCAACCGCCCGCACC-AGGTTCCA-GCT
1 TGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCTAGG-GCCATG-T
3118028 TGTGCTGATGG
1 TGTGCTGATGG
3118039 CATTTGAGGC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
44 4 0.09
45 43 0.91
ACGTcount: A:0.15, C:0.27, G:0.35, T:0.24
Consensus pattern (45 bp):
TGTGCTGATGGTGGTCGAGGCAACCGCCCGCACCTAGGGCCATGT
Found at i:3118348 original size:14 final size:14
Alignment explanation
Indices: 3118322--3118351 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
3118312 GATGGGTGCT
3118322 TATACTTGGCCCCC
1 TATACTTGGCCCCC
3118336 TATA-TTGGCCCCC
1 TATACTTGGCCCCC
3118349 TAT
1 TAT
3118352 CCCTCATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.17, C:0.37, G:0.13, T:0.33
Consensus pattern (14 bp):
TATACTTGGCCCCC
Found at i:3118983 original size:26 final size:26
Alignment explanation
Indices: 3118946--3118998 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3118936 GTTGACATAC
3118946 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
3118972 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
3118998 G
1 G
3118999 ATTGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:3119596 original size:45 final size:45
Alignment explanation
Indices: 3119452--3119597 Score: 150
Period size: 45 Copynumber: 3.2 Consensus size: 45
3119442 TCCCGATGAT
* *
3119452 GGTCGAGGCAACCGCCCGCACCACGGCCCATCATGTGCCGAT-GC
1 GGTCGAGGCAACCGCCCGCACCAGGGCCCATCTTGTGCCGATGGC
* * * * * * *
3119496 TGTTCGATGCAACCGCCCGAACTAGGGGCCATCTTGTGCTGATGGT
1 -GGTCGAGGCAACCGCCCGCACCAGGGCCCATCTTGTGCCGATGGC
* * * *
3119542 GGTTGAGGCAACCGCTCGCACCAGGGCCCAGCTTGTGCCAATGGC
1 GGTCGAGGCAACCGCCCGCACCAGGGCCCATCTTGTGCCGATGGC
*
3119587 GGTCAAGGCAA
1 GGTCGAGGCAA
3119598 GTGCCCATAC
Statistics
Matches: 78, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
45 77 0.99
46 1 0.01
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.17
Consensus pattern (45 bp):
GGTCGAGGCAACCGCCCGCACCAGGGCCCATCTTGTGCCGATGGC
Found at i:3119658 original size:13 final size:13
Alignment explanation
Indices: 3119640--3119664 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3119630 ATGGTCGATG
3119640 CATGTGCCATCAC
1 CATGTGCCATCAC
3119653 CATGTGCCATCA
1 CATGTGCCATCA
3119665 TGTGCCACTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:3120576 original size:26 final size:26
Alignment explanation
Indices: 3120540--3120592 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3120530 GTTGACTTAG
3120540 GCATACGGAGTTCA-TCCCAGGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
3120566 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3120592 G
1 G
3120593 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3121167 original size:45 final size:45
Alignment explanation
Indices: 3121098--3121255 Score: 210
Period size: 45 Copynumber: 3.5 Consensus size: 45
3121088 CAGCCAAGCA
* * *
3121098 TGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCT
1 TGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCT
*
3121143 TGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGAGGCCATCT
1 TGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCT
* * * * * *
3121188 TGTGCCGATGGTGGTCGAGGCAACCACCCGGACTAAGGCCCAGCT
1 TGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCT
3121233 TGTGCCGATGGCTG-TCGAGGCAA
1 TGTGCCGATGG-TGTTCGAGGCAA
3121256 GTGCCCGTAC
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
45 99 0.98
46 2 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGTTCGAGGCAACCACCCGCACCAGGGGCCATCT
Found at i:3121282 original size:90 final size:90
Alignment explanation
Indices: 3121098--3121295 Score: 209
Period size: 90 Copynumber: 2.2 Consensus size: 90
3121088 CAGCCAAGCA
* * * * * * *
3121098 TGTGTCGATGGTGTTCGATGCAACCGCCCGCACCAGGGGCCATCTTGTGCCGATGGTGTTCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCTTGTGCCGATGGTGTTCGAGG
* * *
3121163 CAACCACCCGCACCAGAGGCCATCT
66 CAACCACCCGCACCAAAGGCCAGCC
* *
3121188 TGTGCCGATGGTGGTCGAGGCAACCACCCGGACTAAGGCCCAGCTTGTGCCGATGGCTG-TCGAG
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCTTGTGCCGATGG-TGTTCGAG
*** * *
3121252 GCAAGTGCCCGTACCAAAGGGCAGCC
65 GCAACCACCCGCACCAAAGGCCAGCC
* *
3121278 TGTGCCAATGATGGTCGA
1 TGTGCCGATGGTGGTCGA
3121296 TGCATGTGCC
Statistics
Matches: 88, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
90 86 0.98
91 2 0.02
ACGTcount: A:0.19, C:0.30, G:0.32, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCTTGTGCCGATGGTGTTCGAGG
CAACCACCCGCACCAAAGGCCAGCC
Found at i:3121316 original size:13 final size:13
Alignment explanation
Indices: 3121298--3121322 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3121288 ATGGTCGATG
3121298 CATGTGCCATCAC
1 CATGTGCCATCAC
3121311 CATGTGCCATCA
1 CATGTGCCATCA
3121323 TGTGCCACTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
CATGTGCCATCAC
Found at i:3122056 original size:26 final size:26
Alignment explanation
Indices: 3122027--3122079 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3122017 GTTGACTTAG
3122027 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
*
3122053 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3122079 G
1 G
3122080 ATTGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3123869 original size:27 final size:26
Alignment explanation
Indices: 3123831--3123912 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 26
3123821 GTTGACTTAG
*
3123831 GCATACAGAGTTTATCCTCAGTCTAAA
1 GCATACGGAGTTTATCC-CAGTCTAAA
*
3123858 GCATGCGGAGTTTATCCGCCAGTCT-AA
1 GCATACGGAGTTTAT-C-CCAGTCTAAA
*
3123885 GCATACGGAGTTCATTCCCAGTCTAAA
1 GCATACGGAGTTTA-TCCCAGTCTAAA
3123912 G
1 G
3123913 ATTGGATCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
26 7 0.15
27 31 0.66
28 8 0.17
29 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTTATCCCAGTCTAAA
Found at i:3124055 original size:219 final size:222
Alignment explanation
Indices: 3123661--3124061 Score: 472
Period size: 219 Copynumber: 1.8 Consensus size: 222
3123651 TTGAACTTAG
* * *
3123661 GCATACGTAGTGCACTCCCAGTCTAAGATTGGACCGAACTGAGGGTTGCAGTAGCAGGACCCGTA
1 GCATACGGAGTGCACTCCCAGTCTAAGATTGGACCGAACTGAGGCTTGCAGTAGCAGGACCAGTA
* **
3123726 GCGGGATCGACAGCACATAAAGGGGAATCGGGTCGATCCCCGCTTGTGCATCCTACCTCTTTAGC
66 --GGGATCGACAGCACATAAAGGGGAATCGGGTCGATCCCCGCTTGCGCATCCTACCTCTCCAGC
* * *
3123791 CGGCTGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTTATCCTCAGTCTA
129 CGGCTGAGCGCCCGTATCCTCATTCCATGGGTTGACTTAGGCATACAGAGTTTATCCTCAGTCTA
3123856 AAGCATGCGGAGTTTATCCGCCAGTCTAA
194 AAGCATGCGGAGTTTATCCGCCAGTCTAA
* * * * * *
3123885 GCATACGGAGTTCATTCCCAGTCTAAAGATTGGATCG-AGTCGAGGCTTGCGGTAGTAGGACCAG
1 GCATACGGAGTGCACTCCCAGTCT-AAGATTGGACCGAACT-GAGGCTTGCAGTAGCAGGACCAG
* ** * *
3123949 TA-GGATCGACAGCACAT-AAGGGG-A-CGGGTCGATCCTCGACTTGCGCATTTTGCCTCTCCGG
64 TAGGGATCGACAGCACATAAAGGGGAATCGGGTCGATCCCCG-CTTGCGCATCCTACCTCTCCAG
* * * * * * *
3124010 TCGGTTGAGCGCTCGTA-CCTCGTTCCATGGGTTGGCTTTGGCATACGGAGTT
128 CCGGCTGAGCGCCCGTATCCTCATTCCATGGGTTGACTTAGGCATACAGAGTT
3124062 CATTCCACGT
Statistics
Matches: 147, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
219 41 0.28
220 30 0.20
221 6 0.04
222 15 0.10
224 23 0.16
225 32 0.22
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (222 bp):
GCATACGGAGTGCACTCCCAGTCTAAGATTGGACCGAACTGAGGCTTGCAGTAGCAGGACCAGTA
GGGATCGACAGCACATAAAGGGGAATCGGGTCGATCCCCGCTTGCGCATCCTACCTCTCCAGCCG
GCTGAGCGCCCGTATCCTCATTCCATGGGTTGACTTAGGCATACAGAGTTTATCCTCAGTCTAAA
GCATGCGGAGTTTATCCGCCAGTCTAA
Found at i:3124237 original size:26 final size:26
Alignment explanation
Indices: 3124207--3124259 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3124197 GTTGACTTAG
3124207 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
3124233 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3124259 G
1 G
3124260 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3124778 original size:45 final size:45
Alignment explanation
Indices: 3124710--3124884 Score: 158
Period size: 45 Copynumber: 3.9 Consensus size: 45
3124700 GCTCGGGATA
* *
3124710 TGCCGATGGTGGTCGAGGTAACCGCCTACACCATGACCCAGCATG
1 TGCCGATGGTGGTCGAGGCAACCGCCTACACCAGGACCCAGCATG
* * ** * *
3124755 TGCCGATGGTGTTCGATGCAACCGCCTACACCAGGGGCCATCTTG
1 TGCCGATGGTGGTCGAGGCAACCGCCTACACCAGGACCCAGCATG
* * *
3124800 TGCCGATGGTGGTCGAGGCAATCACG-C-ACAGCAAGG-GCCGGCATG
1 TGCCGATGGTGGTCGAGGCAA-C-CGCCTACA-CCAGGACCCAGCATG
* * * * *
3124845 TGTCGATGGTGATCGAGGCAACTGCCTGCACCAGGGCCCA
1 TGCCGATGGTGGTCGAGGCAACCGCCTACACCAGGACCCA
3124885 AGTTGTGCTG
Statistics
Matches: 103, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 88 0.85
46 6 0.06
47 2 0.02
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.18
Consensus pattern (45 bp):
TGCCGATGGTGGTCGAGGCAACCGCCTACACCAGGACCCAGCATG
Found at i:3125905 original size:26 final size:26
Alignment explanation
Indices: 3125855--3125907 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
3125845 GTTGACTTAG
*
3125855 GCATACGGAGTTCATCCCTAGTCTAA
1 GCATACGGAGTTCATCCCTAATCTAA
*
3125881 GCATATGGAGTTCATTCCC-AATCTAA
1 GCATACGGAGTTCA-TCCCTAATCTAA
3125907 G
1 G
3125908 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCTAATCTAA
Found at i:3126246 original size:26 final size:26
Alignment explanation
Indices: 3126210--3126262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3126200 GTTGACTTAG
*
3126210 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
3126236 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
3126262 G
1 G
3126263 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:3128866 original size:45 final size:44
Alignment explanation
Indices: 3128812--3128896 Score: 107
Period size: 45 Copynumber: 1.9 Consensus size: 44
3128802 GGGGTCATCT
* * * * *
3128812 TGTGTCGATGGTGGTCGATGCAATTGCCCGCACCAAGGGCCGGCA
1 TGTGCCGATGGTGATCAAGGCAATCGCCCGCACC-AGGGCCGGCA
*
3128857 TGTGCCGATGGTGATTAAGGCAATCGCCCGCACCAGGGCC
1 TGTGCCGATGGTGATCAAGGCAATCGCCCGCACCAGGGCC
3128897 CAGCTTGTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
44 6 0.18
45 28 0.82
ACGTcount: A:0.19, C:0.28, G:0.34, T:0.19
Consensus pattern (44 bp):
TGTGCCGATGGTGATCAAGGCAATCGCCCGCACCAGGGCCGGCA
Found at i:3130033 original size:26 final size:26
Alignment explanation
Indices: 3129997--3130049 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3129987 GTTGACTTAG
3129997 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
3130023 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
3130049 G
1 G
3130050 ATGGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:3130389 original size:26 final size:26
Alignment explanation
Indices: 3130353--3130405 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3130343 GTTGACTTAG
3130353 GCATACGGAGTTCA-TCCTCAGTCTAA
1 GCATACGGAGTTCATTCC-CAGTCTAA
*
3130379 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3130405 G
1 G
3130406 ATGGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3130732 original size:355 final size:356
Alignment explanation
Indices: 3129975--3130734 Score: 1215
Period size: 355 Copynumber: 2.1 Consensus size: 356
3129965 CGCCTACACG
*
3129975 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGCATACGGAGTTCATTC
1 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
3130040 CCAGTCTAAGATGGGACCGGACCAAGGGTTGTGATAGCAGGACCACCAGCAGGATCGACAGCACG
66 CCAGTCTAAGATGGGACCGAACCAAGGGTTGCGACAGCAGGACCACCAGCAGGATCGACAGCACG
* * *
3130105 TAAGGGGGATCAGGCTGATCCTCGACTTACACATTTTACCTCTTCGGTCGGCTAAGCCCCTGCAC
131 CAAGGGGGATCAGGCTGATCCTCGACTTACACATTTTACCTCTTCGATCGACTAAGCCCCTGCAC
* * * *
3130170 ATTCGTTTTTATGGGTTGGCTTAGGCATACAGAGTTCATCCCATGTTTACGCCCCAGTCGGACAG
196 ATTCGTTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCACGTCTAAGCCCCAGTCGGACAG
* *
3130235 AGGGTTGTGGCAGCGGGACTGATAGCACGCAGAGGGGGACTGGGCCAATCCCCGGCTTGCGCATC
261 AGGGTTGTGGCAGCAGGACTGATAGCACGCAGAGGGGGACTGGGCCAATCCCCAGCTTGCGCATC
*
3130300 ATGCCTCTCCAGTCAGCTCAACACCCGCACG
326 ATGCCTCTCCAGTCAGCTCAACACCCGCACA
** *
3130331 CTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TCCTCAGTCTAAGCATATGGAGTTCATT
1 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-CAGTCTAAGCATACGGAGTTCATT
*
3130395 CCCAGTCTAAGATGGGACTGAACCAAGGGTTGCGACAGCAGGACCACCAGCAGGATCGACAGCAC
65 CCCAGTCTAAGATGGGACCGAACCAAGGGTTGCGACAGCAGGACCACCAGCAGGATCGACAGCAC
* *
3130460 GCAAGGGGGATCAGG-TCGATCCTC-AGCTTACGCATTTTGCCTCTTCGATCGACTAAG-CCCTC
130 GCAAGGGGGATCAGGCT-GATCCTCGA-CTTACACATTTTACCTCTTCGATCGACTAAGCCCCT-
*
3130522 GCACATTCG-TTTCGTGGGTTGGCTTAGGCATACAGAGTTCATCCCACGTCTAAGCCCCAGTCGG
192 GCACATTCGTTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCACGTCTAAGCCCCAGTCGG
* *
3130586 ACCGAGGGTTGTGGTAGCAGGACTGATAGCACGCAGAGGGGGACTGGGCCAATCCCCAGCTTGCG
257 ACAGAGGGTTGTGGCAGCAGGACTGATAGCACGCAGAGGGGGACTGGGCCAATCCCCAGCTTGCG
* *
3130651 CATCATGCCTCTCTAGTCGGCTCAACACCCGCACA
322 CATCATGCCTCTCCAGTCAGCTCAACACCCGCACA
*
3130686 CTTGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAG
1 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
3130735 ATCGGACCGA
Statistics
Matches: 371, Mismatches: 28, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
355 193 0.52
356 178 0.48
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.23
Consensus pattern (356 bp):
CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATGGGACCGAACCAAGGGTTGCGACAGCAGGACCACCAGCAGGATCGACAGCACG
CAAGGGGGATCAGGCTGATCCTCGACTTACACATTTTACCTCTTCGATCGACTAAGCCCCTGCAC
ATTCGTTTTCATGGGTTGGCTTAGGCATACAGAGTTCATCCCACGTCTAAGCCCCAGTCGGACAG
AGGGTTGTGGCAGCAGGACTGATAGCACGCAGAGGGGGACTGGGCCAATCCCCAGCTTGCGCATC
ATGCCTCTCCAGTCAGCTCAACACCCGCACA
Found at i:3131332 original size:45 final size:44
Alignment explanation
Indices: 3131175--3131319 Score: 128
Period size: 45 Copynumber: 3.2 Consensus size: 44
3131165 GGGCTCGACA
* * ** ** * *
3131175 TGTGCCGATGGTGGTCAAGGCAACCGCCTGCACCACCGTCCAGCA
1 TGTGCCGATGGT-GTCGAGGCAACCACCCACACCAGGGCCCAGCT
* * * *
3131220 TGTGCCGATGGTGTTCGATGCAACCGCCCACACCAGGGGCCATCT
1 TGTGCCGATGGTG-TCGAGGCAACCACCCACACCAGGGCCCAGCT
* * *
3131265 TATGCCGATGGTGGCTGAGGCAACCACCCGCACCAGGGCCCAGCT
1 TGTGCCGATGGTGTC-GAGGCAACCACCCACACCAGGGCCCAGCT
3131310 TGTGCCGATG
1 TGTGCCGATG
3131320 CCGATCGAGG
Statistics
Matches: 81, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
44 2 0.02
45 79 0.98
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.17
Consensus pattern (44 bp):
TGTGCCGATGGTGTCGAGGCAACCACCCACACCAGGGCCCAGCT
Found at i:3132659 original size:26 final size:26
Alignment explanation
Indices: 3132623--3132675 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3132613 GTTGACTTAG
*
3132623 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3132649 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
3132675 G
1 G
3132676 ATCGGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3133014 original size:158 final size:158
Alignment explanation
Indices: 3132709--3133007 Score: 420
Period size: 158 Copynumber: 1.9 Consensus size: 158
3132699 AGCAGCACAT
* * * * * *
3132709 AGAGGGGGATCGGGTCGACCCTTGGCTTGCGTATCCTACCTCTCCGACCGGTTTAGTGCCCGTAC
1 AGAGGGGGATCGAGTCGACCCTCGGCTTACGCATCCTACCTCTCCGACCGGTTGAGTGCCCGCAC
** * *
3132774 GCTCGTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCTGGTCTAAGCCCTAATCGAACCGA
66 GCTCGTTTCGTGGGTTGACTTACACATATAGAGTTCATTCCCGGTCTAAGCCCCAATCGAACCGA
*
3132839 GGGACTCGCAGCAGGATCGGTAGCACGC
131 GGGACCCGCAGCAGGATCGGTAGCACGC
* * ** **
3132867 AGAGGGGGATCGAGTCGATCCTCGGCTTACGCATCCTGCCTCTCCGATTGGTTGAGTGCTTGCAC
1 AGAGGGGGATCGAGTCGACCCTCGGCTTACGCATCCTACCTCTCCGACCGGTTGAGTGCCCGCAC
*
3132932 GCTCGTTTCGTGGGTTGACTTACACATACT-GAGTTCATTCCCGGTCTAAGCCCCAATCGGACCG
66 GCTCGTTTCGTGGGTTGACTTACACATA-TAGAGTTCATTCCCGGTCTAAGCCCCAATCGAACCG
3132996 AGGGACCCGCAG
130 AGGGACCCGCAG
3133008 TGGGATCAAC
Statistics
Matches: 122, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
158 121 0.99
159 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.29, T:0.25
Consensus pattern (158 bp):
AGAGGGGGATCGAGTCGACCCTCGGCTTACGCATCCTACCTCTCCGACCGGTTGAGTGCCCGCAC
GCTCGTTTCGTGGGTTGACTTACACATATAGAGTTCATTCCCGGTCTAAGCCCCAATCGAACCGA
GGGACCCGCAGCAGGATCGGTAGCACGC
Found at i:3133317 original size:45 final size:45
Alignment explanation
Indices: 3133171--3133335 Score: 129
Period size: 45 Copynumber: 3.7 Consensus size: 45
3133161 CACGGCCCAG
* ** * * * *
3133171 CATGTGCCGATGGTGTTCGATCCAACTGCCCATACCAAGGGCCA-T
1 CATGTGCCGATGGTGGTCGAGGCAAGTGCCCGTACCAAGGG-TAGA
* * * *
3133216 CTTGAGCCGATGGTGGTCGAGGCAA-TCACCCGTACCAAGGGTCGA
1 CATGTGCCGATGGTGGTCGAGGCAAGT-GCCCGTACCAAGGGTAGA
*
3133261 CATGTGCCGATGGCGGTCGAGGCAAGTGCCCGTACCAAAGGGTAG-
1 CATGTGCCGATGGTGGTCGAGGCAAGTGCCCGTACC-AAGGGTAGA
* * * * *
3133306 CCTGTGTCGATGATGGTCGATGCATGTGCC
1 CATGTGCCGATGGTGGTCGAGGCAAGTGCC
3133336 ATCACCATGC
Statistics
Matches: 95, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
44 1 0.01
45 86 0.91
46 8 0.08
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.21
Consensus pattern (45 bp):
CATGTGCCGATGGTGGTCGAGGCAAGTGCCCGTACCAAGGGTAGA
Found at i:3134256 original size:26 final size:28
Alignment explanation
Indices: 3134227--3134300 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 28
3134217 GTTGCCTTAG
3134227 GCATACGGAGTTCA-TC-CCCAGTCTAA
1 GCATACGGAGTTCACTCACCCAGTCTAA
*
3134253 GCATACAGAGTTCACTCAATTCCCAGTCTAA
1 GCATACGGAGTTCACTC-A--CCCAGTCTAA
3134284 GCATACGGAGTTCACTC
1 GCATACGGAGTTCACTC
3134301 GAGTTTTTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
26 13 0.32
27 2 0.05
31 26 0.63
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (28 bp):
GCATACGGAGTTCACTCACCCAGTCTAA
Found at i:3135491 original size:45 final size:45
Alignment explanation
Indices: 3135307--3135502 Score: 180
Period size: 45 Copynumber: 4.4 Consensus size: 45
3135297 AGGCTCGGTA
* *
3135307 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCATGGCCCAG-T
1 TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGCCCAGCT
* * * * *
3135351 ATGTGTCGATGGTGTTCGATGCAACCACCCGCACCAGGGGCCATCT
1 -TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGCCCAGCT
** * * * * ** *
3135397 TGTATCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGG-CTGGCA
1 TGTGCCGATGGTGATCGAGGCAACCACCCGCACC-AGGGCCCAGCT
* * *
3135442 TGTGCCGATGGTGATCGAGGCAACCGCTCGCACTAGGGCCCAGCT
1 TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGCCCAGCT
*
3135487 TGTGCCGATGGCGATC
1 TGTGCCGATGGTGATC
3135503 AAGGGAAGTG
Statistics
Matches: 121, Mismatches: 27, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
44 4 0.03
45 112 0.93
46 5 0.04
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (45 bp):
TGTGCCGATGGTGATCGAGGCAACCACCCGCACCAGGGCCCAGCT
Found at i:3135496 original size:90 final size:90
Alignment explanation
Indices: 3135307--3135497 Score: 220
Period size: 90 Copynumber: 2.1 Consensus size: 90
3135297 AGGCTCGGTA
* * * * *
3135307 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCATGGCCCAGTATGTGTCGATGGTGTTCGATG
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
* *
3135372 CAACCACCCGCACCAGGGGCCATCT
66 CAACCACCCGCACCAGGGCCCAGCT
** * * * * **
3135397 TGTATCGATGGTGGTCGAGGCAATCGCCTGCACCAAGGGCTGGCATGTGCCGATGGTGATCGAGG
1 TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
* * *
3135462 CAACCGCTCGCACTAGGGCCCAGCT
66 CAACCACCCGCACCAGGGCCCAGCT
3135487 TGTGCCGATGG
1 TGTGCCGATGG
3135498 CGATCAAGGG
Statistics
Matches: 81, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
90 81 1.00
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.19
Consensus pattern (90 bp):
TGTGCCGATGGTGGTCGAGGCAACCACCCGCACCAAGGCCCAGCATGTGCCGATGGTGATCGAGG
CAACCACCCGCACCAGGGCCCAGCT
Found at i:3136845 original size:159 final size:159
Alignment explanation
Indices: 3136547--3136848 Score: 394
Period size: 159 Copynumber: 1.9 Consensus size: 159
3136537 GATCAGGTCG
** *
3136547 ATCCTCGACTTGCACATTCTACCTCTCCGATCGGTTAAGCCCCCGTAAGCTCGTTTCATGGGTTG
1 ATCCTCGACTTGCACATTCTACCTCTCCGATCGACTAAGCCCCCGTAAGATCGTTTCATGGGTTG
* * * * *
3136612 GCTAAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGCAGTGGGA
66 GCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTCTGGCAGCGAGA
**
3136677 TCGGTAGCACACAGTGGAGGACCGGGCCA
131 TCGACAGCACACAGTGGAGGACCGGGCCA
* ** *
3136706 ATCCTCGGCTTGTGCATTCTACCTCTCCTG-TCGACTAAGCCCCCGTACGATCGTTT-AGTGGGT
1 ATCCTCGACTTGCACATTCTACCTCTCC-GATCGACTAAGCCCCCGTAAGATCGTTTCA-TGGGT
* * * *
3136769 TGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTCTGGCAGCGA
64 TGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTCTGGCAGCGA
3136834 GA-CTGACAGCACACA
129 GATC-GACAGCACACA
3136849 AAAGGGGACC
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
158 2 0.02
159 119 0.98
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (159 bp):
ATCCTCGACTTGCACATTCTACCTCTCCGATCGACTAAGCCCCCGTAAGATCGTTTCATGGGTTG
GCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTCTGGCAGCGAGA
TCGACAGCACACAGTGGAGGACCGGGCCA
Found at i:3136858 original size:159 final size:159
Alignment explanation
Indices: 3136547--3136882 Score: 392
Period size: 159 Copynumber: 2.1 Consensus size: 159
3136537 GATCAGGTCG
** ** *
3136547 ATCCTCGACTTGCACATTCTACCTCTCCGATCGGTTAAGCCCCCGTAAGCTCGTTTCATGGGTTG
1 ATCCTCGACTTGTGCATTCTACCTCTCCGATCGACTAAGCCCCCGTAAGATCGTTTCATGGGTTG
* * * * *
3136612 GCTAAGGCATACGGAGTTTATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGCAGTGGGA
66 GCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTCTGGCAGCGAGA
** ** *
3136677 TCGGTAGCACACAGTGGAGGACCGGGCCA
131 TCGACAGCACACAAAGGAGGACCGAGCCA
* *
3136706 ATCCTCGGCTTGTGCATTCTACCTCTCCTG-TCGACTAAGCCCCCGTACGATCGTTT-AGTGGGT
1 ATCCTCGACTTGTGCATTCTACCTCTCC-GATCGACTAAGCCCCCGTAAGATCGTTTCA-TGGGT
* * * *
3136769 TGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGCCCCAGTTGGACCGAGGGTTCTGGCAGCGA
64 TGGCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTCTGGCAGCGA
**
3136834 GA-CTGACAGCACACAAAAGG-GGACCGAGCTG
129 GATC-GACAGCACAC-AAAGGAGGACCGAGCCA
*
3136865 ATCCCCGACTTGTGCATT
1 ATCCTCGACTTGTGCATT
3136883 ACGTCTCTCC
Statistics
Matches: 148, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
158 2 0.01
159 142 0.96
160 4 0.03
ACGTcount: A:0.20, C:0.27, G:0.28, T:0.25
Consensus pattern (159 bp):
ATCCTCGACTTGTGCATTCTACCTCTCCGATCGACTAAGCCCCCGTAAGATCGTTTCATGGGTTG
GCTAAGGCATACGGAGTTCATTCCATGTCTAAGCCCCAATCGGACCGAGGGTTCTGGCAGCGAGA
TCGACAGCACACAAAGGAGGACCGAGCCA
Found at i:3136891 original size:159 final size:158
Alignment explanation
Indices: 3136582--3136963 Score: 398
Period size: 159 Copynumber: 2.4 Consensus size: 158
3136572 TCCGATCGGT
* * *
3136582 TAAGCCCCCGTAAGCTCGTTTCATGGGTTGGCTAAGGCATACGGAGTTTATTCCATGTCTAAGCC
1 TAAGCCCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
* * * * ** ** * *
3136647 CCAATCGGATCGAGGGTTGTGGCAGTGGGATCGGTAGCACACAGTGGAGGACCGGGCCAATCCTC
66 CCAATCGGACCGAGGGTTCTGGCAGCGAGATCGACAGCACACAAAGGAGGACCGAGCCAATCCCC
* * *
3136712 GGCTTGTGCATTCTACCTCTCCTGTC-GAC
131 GACTTGTGCATTCTA-CTCTCCGGCCTG-C
* *
3136741 TAAGCCCCCGTACGATCGTTT-AGTGGGTTGGCTTAGGCGTACGGAGTTCATTCCATGTCTAAGC
1 TAAGCCCCCGTACGCTCGTTTCA-TGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
* * **
3136805 CCCAGTTGGACCGAGGGTTCTGGCAGCGAGA-CTGACAGCACACAAAAGG-GGACCGAGCTGATC
65 CCCAATCGGACCGAGGGTTCTGGCAGCGAGATC-GACAGCACAC-AAAGGAGGACCGAGCCAATC
3136868 CCCGACTTGTGCATTACGT-CTCTCCGGCCTGC
128 CCCGACTTGTGCATT-C-TACTCTCCGGCCTGC
* * ** * *
3136900 TCAGCGCCCGCCCGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCA-GTCTAAGC
1 TAAGCCCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGC
3136964 ATATGGGGTA
Statistics
Matches: 185, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
158 2 0.01
159 173 0.94
160 9 0.05
161 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (158 bp):
TAAGCCCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCC
CCAATCGGACCGAGGGTTCTGGCAGCGAGATCGACAGCACACAAAGGAGGACCGAGCCAATCCCC
GACTTGTGCATTCTACTCTCCGGCCTGC
Found at i:3136966 original size:26 final size:26
Alignment explanation
Indices: 3136936--3136986 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
3136926 GTTGACTTAG
* *
3136936 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTACATTCCCAATCTAA
*
3136962 GCATATGGGGTACATTCCCAATCTA
1 GCATATGGAGTACATTCCCAATCTA
3136987 TGATCGGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATATGGAGTACATTCCCAATCTAA
Found at i:3137495 original size:45 final size:45
Alignment explanation
Indices: 3137424--3137547 Score: 203
Period size: 45 Copynumber: 2.8 Consensus size: 45
3137414 GACCGAAGCT
* *
3137424 CGGCATGTGTCGATGGTGGTCCAGGCAATCACCCACACCAAAGGC
1 CGGCATGTGTCGATGGTGATCCAGGCAACCACCCACACCAAAGGC
* *
3137469 CGGCATGTGTCGATGGTGATCTAGGCAACCGCCCACACCAAAGGC
1 CGGCATGTGTCGATGGTGATCCAGGCAACCACCCACACCAAAGGC
*
3137514 CGGCATGTGTCGATGGTGATCGAGGCAACCACCC
1 CGGCATGTGTCGATGGTGATCCAGGCAACCACCC
3137548 GTACCAGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 73 1.00
ACGTcount: A:0.23, C:0.31, G:0.30, T:0.16
Consensus pattern (45 bp):
CGGCATGTGTCGATGGTGATCCAGGCAACCACCCACACCAAAGGC
Found at i:3144463 original size:26 final size:26
Alignment explanation
Indices: 3144415--3144467 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3144405 GTTGACTTAG
*
3144415 GCATACGGAGTTCATCACTAGTCTAA
1 GCATACGGAGTTCATCACCAGTCTAA
3144441 GCATACGGAGTTCATTC-CCAGTCTAA
1 GCATACGGAGTTCA-TCACCAGTCTAA
3144467 G
1 G
3144468 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCACCAGTCTAA
Found at i:3144811 original size:26 final size:26
Alignment explanation
Indices: 3144775--3144827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3144765 GTTGACTTAG
*
3144775 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3144801 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3144827 G
1 G
3144828 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3145283 original size:26 final size:26
Alignment explanation
Indices: 3145253--3145303 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
3145243 GTTGACTTAG
* * * *
3145253 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
3145279 GCATACAGAGCTCATTCCCAGTCTA
1 GCATACAGAGCTCATTCCCAGTCTA
3145304 TGATCAGACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:3145406 original size:478 final size:478
Alignment explanation
Indices: 3144510--3145579 Score: 1317
Period size: 478 Copynumber: 2.2 Consensus size: 478
3144500 CAGGACTAGC
** * * * * *
3144510 AGCAGGATCGGTAGCACGTAGAG-GGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTTCG
1 AGCAGGATCGACAACACGTAGAGAGGGATCGGGCCGATCCTCGGCTTGCACATTCTGGCTCTTC-
* * *
3144574 GCC-AGCTGAGCCCCCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCGATGT
65 GCCGA-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * * *
3144638 CTAAGCCCTAGCCGAACAGAGGGTTGTGACAGCGGGACCGACAGTACACAGAGGGGGATCGGGCC
129 ATAAGCCCCAGCCGAACAGAGGGTTGTGACAGCGGGACCGACAGCACACAGAGGGGGACCGGGCC
* * * * **
3144703 GATCCTCGGCTTGCGCATTATGCCTCTCCGGCCTGCTTAGCACCCGCACGATCGTTTTGTGGGTT
194 GATCCCCGGCTTGCACATTATGCCTCTCCGGCCTGCTCAGCACCCGCACGATCATTTCATGGGTT
* * *
3144768 GACTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
259 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCAG
* * * *
3144833 ACCGACAGCAGCAGACAGAGGGGGATCGAGCCGATCCTCGGCTTGCCCATCCTACCTTTCCGATC
324 ACCGACAGCAGCACACAGAGGGGGATCGAGCCCATCCTCGGCTTACCCATCCTACCTCTCCGATC
3144898 GACTGAGCACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCGGTCTAA
389 GACTGAGCACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCGGTCTAA
* * * *
3144963 GCCCTAACCGGATCGAAGGACCCGT
454 GCCCCAACCGAATAGAAGGACCCAT
* * *
3144988 AGCAGGATCTACAACACGCT-GAGAGGGATCGGGCCAATCCTCGGCTTGCACATTCTGGCTCTCC
1 AGCAGGATCGACAACACG-TAGAGAGGGATCGGGCCGATCCTCGGCTTGCACATTCTGGCTCTTC
*
3145052 GATCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
65 G-CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* ** * * *
3145117 ATAAGCCCCAGCCAGATC-GAGGGTTGTGGTAGTGGGACCGACAGCACGCAGAGGGGGACCGGGT
129 ATAAGCCCCAGCC-GAACAGAGGGTTGTGACAGCGGGACCGACAGCACACAGAGGGGGACCGGGC
* * * * *
3145181 CGATCCCCGGCTTGCACGTTATGCCTCTCCTG-CTGGCTCAGCGCCCGTA-GCTCATTTCATGGG
193 CGATCCCCGGCTTGCACATTATGCCTCTCCGGCCT-GCTCAGCACCCGCACGATCATTTCATGGG
* * *
3145244 TTGACTTAGGCATACGGAGTTCATTTCTAGTCTAAGCATACAGAGCTCATTCCCAGTCTATGATC
257 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATC
* * **
3145309 AGACTGACAGCAGCACATAGAGGGGGATCGAGCCCATCCTCGGCTTATGCATCCTACCTCTCCGA
322 AGACCGACAGCAGCACACAGAGGGGGATCGAGCCCATCCTCGGCTTACCCATCCTACCTCTCCGA
** * * * * * * *
3145374 -CTGGTTGAGCGCTCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCCGGTC
387 TC-GACTGAGCACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCGGTC
* *
3145438 TAAGCCCCAATCGAATAGAGGGACCCAT
451 TAAGCCCCAACCGAATAGAAGGACCCAT
** * * ** * * *
3145466 AGTGGGATCGACAGCACGTAGAGGGGGAAGGGGCCGATCCTTGACTTACACATTCTGGCTCTTCG
1 AGCAGGATCGACAACACGTAGAGAGGGATCGGGCCGATCCTCGGCTTGCACATTCTGGCTCTTC-
** * **
3145531 GCCGACTGAGTGCCCGCACGCTCGTTTCATGGGTTCACTTAGGCATACG
65 GCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACG
3145580 TAGCGCATTC
Statistics
Matches: 501, Mismatches: 82, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
477 2 0.00
478 313 0.62
479 182 0.36
480 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (478 bp):
AGCAGGATCGACAACACGTAGAGAGGGATCGGGCCGATCCTCGGCTTGCACATTCTGGCTCTTCG
CCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTAT
AAGCCCCAGCCGAACAGAGGGTTGTGACAGCGGGACCGACAGCACACAGAGGGGGACCGGGCCGA
TCCCCGGCTTGCACATTATGCCTCTCCGGCCTGCTCAGCACCCGCACGATCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGCTCATTCCCAGTCTAAGATCAGAC
CGACAGCAGCACACAGAGGGGGATCGAGCCCATCCTCGGCTTACCCATCCTACCTCTCCGATCGA
CTGAGCACCCACACACTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCCGGTCTAAGC
CCCAACCGAATAGAAGGACCCAT
Found at i:3145849 original size:45 final size:45
Alignment explanation
Indices: 3145811--3145904 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
3145801 GGTGTTTGAT
* * * *
3145811 GCAACCGCAGGCACCAGGGGCCATCTTGTGCTGATGGTGATCGAG
1 GCAACCGCACGCACCAGGGCCCAGCTTGTGCCGATGGTGATCGAG
* * *
3145856 GCAACTGCCCGCACCAGGGCCCAGCTTGTGCCGATGGCGATCGAG
1 GCAACCGCACGCACCAGGGCCCAGCTTGTGCCGATGGTGATCGAG
3145901 GCAA
1 GCAA
3145905 GTGCCCGTAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.20, C:0.31, G:0.34, T:0.15
Consensus pattern (45 bp):
GCAACCGCACGCACCAGGGCCCAGCTTGTGCCGATGGTGATCGAG
Found at i:3145910 original size:45 final size:45
Alignment explanation
Indices: 3145821--3145916 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
3145811 GCAACCGCAG
* * * *
3145821 GCACCAGGGGCCATCTTGTGCTGATGGTGATCGAGGCAACTGCCC
1 GCACCAGGGCCCAGCTTGTGCCGATGGCGATCGAGGCAACTGCCC
*
3145866 GCACCAGGGCCCAGCTTGTGCCGATGGCGATCGAGGCAAGTGCCC
1 GCACCAGGGCCCAGCTTGTGCCGATGGCGATCGAGGCAACTGCCC
*
3145911 GTACCA
1 GCACCA
3145917 AAGGGCAGCC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.19, C:0.31, G:0.33, T:0.17
Consensus pattern (45 bp):
GCACCAGGGCCCAGCTTGTGCCGATGGCGATCGAGGCAACTGCCC
Found at i:3145936 original size:45 final size:44
Alignment explanation
Indices: 3145821--3145936 Score: 117
Period size: 45 Copynumber: 2.6 Consensus size: 44
3145811 GCAACCGCAG
* * * *
3145821 GCACCAGGGGCCATCTTGTGCTGATGGTGATCGAGGCAACTGCCC
1 GCACCA-GGGCCAGCCTGTGCCGATGGCGATCGAGGCAACTGCCC
* *
3145866 GCACCAGGGCCCAGCTTGTGCCGATGGCGATCGAGGCAAGTGCCC
1 GCACCAGGG-CCAGCCTGTGCCGATGGCGATCGAGGCAACTGCCC
* *
3145911 GTACCAAAGGG-CAGCCTGTGTCGATG
1 GCACC--AGGGCCAGCCTGTGCCGATG
3145937 ATGGTCGATG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
44 3 0.05
45 54 0.89
47 4 0.07
ACGTcount: A:0.19, C:0.29, G:0.34, T:0.17
Consensus pattern (44 bp):
GCACCAGGGCCAGCCTGTGCCGATGGCGATCGAGGCAACTGCCC
Found at i:3147909 original size:45 final size:45
Alignment explanation
Indices: 3147860--3148040 Score: 141
Period size: 45 Copynumber: 4.0 Consensus size: 45
3147850 GATGGTTGAC
** *
3147860 GCAACCGCCCGCACCACCGCCCAGCATGTGCCGATGGTGTTCGAT
1 GCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAG
* * * * * * *
3147905 GCAACCGCTCGTACCAGGGGCCATCTTGTGCCAATGGTGGTT-GAG
1 GCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGT-GTTCGAG
** * * * *
3147950 GCAATTGCCCGCACCAATGG-TCGGCACGTGCCGATGGTGATCGAG
1 GCAACCGCCCGCACCAA-GGCCCAGCATGTGCCGATGGTGTTCGAG
* * * * *
3147995 GCAACCGCTCGCACTAAGGCCCAGCTTGTGCCGATGGCGATCGAG
1 GCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAG
3148040 G
1 G
3148041 TAAGTGCCCG
Statistics
Matches: 102, Mismatches: 30, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
44 4 0.04
45 93 0.91
46 5 0.05
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
GCAACCGCCCGCACCAAGGCCCAGCATGTGCCGATGGTGTTCGAG
Found at i:3148049 original size:90 final size:90
Alignment explanation
Indices: 3147887--3148056 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 90
3147877 CGCCCAGCAT
* * * * * * * * *
3147887 GTGCCGATGGTGTTCGATGCAACCGCTCGTACCAGGGGCCATCTTGTGCCAATGGTGGTTGAGGC
1 GTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCTTGTGCCAATGGCGATCGAGGC
*
3147952 AATTGCCCGCACCAATGGTCGGCAC
66 AAGTGCCCGCACCAATGGTCGGCAC
* * *
3147977 GTGCCGATGGTGATCGAGGCAACCGCTCGCACTAAGGCCCAGCTTGTGCCGATGGCGATCGAGGT
1 GTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCTTGTGCCAATGGCGATCGAGGC
*
3148042 AAGTGCCCGTACCAA
66 AAGTGCCCGCACCAA
3148057 AGGGCAGCCT
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
90 66 1.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.20
Consensus pattern (90 bp):
GTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCTTGTGCCAATGGCGATCGAGGC
AAGTGCCCGCACCAATGGTCGGCAC
Found at i:3148075 original size:90 final size:90
Alignment explanation
Indices: 3147881--3148075 Score: 203
Period size: 90 Copynumber: 2.2 Consensus size: 90
3147871 CACCACCGCC
* * * * * * * * *
3147881 CAGCATGTGCCGATGGTGTTCGATGCAACCGCTCGTACCAGGGGCCATCTTGTGCCAATGGTGGT
1 CAGCCTGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCTTGTGCCAATGGCGAT
* * * *
3147946 TGAGGCAATTGCCCGCACCAATGGT
66 CGAGGCAAGTGCCCGCACCAAAGGG
* * *
3147971 CGGCAC-GTGCCGATGGTGATCGAGGCAACCGCTCGCACTAAGGCCCAGCTTGTGCCGATGGCGA
1 CAGC-CTGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCTTGTGCCAATGGCGA
* *
3148035 TCGAGGTAAGTGCCCGTACCAAAGGG
65 TCGAGGCAAGTGCCCGCACCAAAGGG
*
3148061 CAGCCTGTGTCGATG
1 CAGCCTGTGCCGATG
3148076 ATGGTCGATG
Statistics
Matches: 83, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
89 1 0.01
90 82 0.99
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.20
Consensus pattern (90 bp):
CAGCCTGTGCCGATGGTGATCGAGGCAACCGCTCGCACCAAGGCCCAGCTTGTGCCAATGGCGAT
CGAGGCAAGTGCCCGCACCAAAGGG
Found at i:3148827 original size:26 final size:26
Alignment explanation
Indices: 3148776--3148828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3148766 GTTGACTTAG
* **
3148776 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
3148802 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGGAGTTCATTCCCAACCTAA
3148828 G
1 G
3148829 ATCAGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAACCTAA
Found at i:3151498 original size:45 final size:45
Alignment explanation
Indices: 3151406--3151563 Score: 149
Period size: 45 Copynumber: 3.5 Consensus size: 45
3151396 GCATGGTGAT
* * * * *
3151406 GGCACATGCATCGACCATCATCGGCATAGGCT--GCCCTTTGGTACG
1 GGCACTTGCCTCGACCACCATCGGCACAGGCTGGGCCC--TGGTGCG
3151451 GGCACTTGCCTCGACCACCATCGGCACAGGCTGGGCCCTGGTGCG
1 GGCACTTGCCTCGACCACCATCGGCACAGGCTGGGCCCTGGTGCG
** * * * * * *
3151496 GGCGGTTGCCTCGACCACCATCGGTACAAGATGGCCCCTTGTGTG
1 GGCACTTGCCTCGACCACCATCGGCACAGGCTGGGCCCTGGTGCG
* *
3151541 GGCAGTTGCCTCAACCACCATCG
1 GGCACTTGCCTCGACCACCATCG
3151564 ATACATGCTG
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
45 92 0.96
47 4 0.04
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.20
Consensus pattern (45 bp):
GGCACTTGCCTCGACCACCATCGGCACAGGCTGGGCCCTGGTGCG
Found at i:3152037 original size:26 final size:26
Alignment explanation
Indices: 3152001--3152053 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
3151991 CCGGTCCGAT
3152001 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
3152027 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
3152053 C
1 C
3152054 CTAAGTCACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:3152998 original size:26 final size:26
Alignment explanation
Indices: 3152962--3153017 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
3152952 CCAATTTGAT
*
3152962 CTTAGACTGGGAATGAACACTGTATG
1 CTTAGACTGGGAATGAACACCGTATG
* *
3152988 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
3153014 CTTA
1 CTTA
3153018 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:3153346 original size:26 final size:26
Alignment explanation
Indices: 3153317--3153369 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3153307 CCAATCCGAT
3153317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3153343 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3153369 C
1 C
3153370 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3153688 original size:26 final size:26
Alignment explanation
Indices: 3153648--3153700 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3153638 TCGGTCTGAT
*
3153648 CTTAGGCTGGAAATGAACTCCGCATG
1 CTTAGACTGGAAATGAACTCCGCATG
* *
3153674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGCATG
3153700 C
1 C
3153701 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGCATG
Found at i:3154202 original size:686 final size:686
Alignment explanation
Indices: 3152958--3154246 Score: 1646
Period size: 686 Copynumber: 1.9 Consensus size: 686
3152948 GTTGCCAATT
* * * * * *
3152958 TGATCTTAGACTGGGAATGAACACTGTATGCTTAGATTGGGAATGAACTCCGTATGCTTAAGTCA
1 TGATCTTAGACTGGAAATGAACACCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCA
* ** * *
3153023 ACCCATGAAATGAGCGTGCGGGTGCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGGGGATTG
66 ACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCG
* * **
3153088 GCCCAGTCCCCCTCTGTGTGCTGCCGGTCCCGCTACCACAACCCTCTGTCCGACTGGGGCTTAGA
131 GCCCAGACCCCCTCTGCGTGCTGCCAATCCCGCTACCACAACCCTCTGTCCGACTGGGGCTTAGA
* *
3153153 CATGGAATGAACTTCGTATGCCTAAGCCAATCCATGAAACAAGCATGCAGGCACTCAACCGGCCG
196 CATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCATACAGGCACTCAACCGGCCG
* * *
3153218 GAGAGCTAGAATACGTAGCCAGGGATCGACCCGATCCCCCTCTACGTGCAGTCGATCCTGTTACT
261 GAGAGCTAGAATACGAAACCAGGGATCGACCCGATCCCCCTCTACGTGCAGTCGATCCTGCTACT
* *** * *
3153283 AGTCCTGCTACCACCACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
326 AGTCCTGCTACCACAACCCTCAACCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAG
*** * * * ** *
3153348 ACTGGGGATGAACTCCGTATGCCTATGTCAACCCACAAAACGAGCGTACGGGCGCTCAGTCGGTA
391 ACTCAAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGGACGGGCACTCAACCGGCA
* * * * *
3153413 AGAGAGGCAGGCTGCGTAAGCTGGGGATCAACCCGGTCCCCTCTGTGTGCTGCCTATCCCGCTAT
456 AGAGAAGCAGGATGCGTAAGCTGGGGATCAACCCGGTCCCCTCTGTATGCTACCGATCCCGCTAT
*
3153478 AGGCATGACTACCCGTAACCCAGTCCGGTCTTGATCTTAGACTGGGAG-GCACTACATATGCCAA
521 AGGCATGACTACCCG-AACCCAGTCCGGTCTCGATCTTAGACTGGGAGTGCACTACATATGCCAA
3153542 AGTCAACCCACGAAACGAACATGTGGGAGCTCAGCCGGTCGGAGAGCCTGGATGCGCAATCCGAG
585 AGTCAACCCACGAAACGAACATGTGGGAGCTCAGCCGGTCGGAGAGCCTGGATGCGCAATCCGAG
3153607 GATCGACTCGATCCCTCTCTGCATGCTACTATCGGTC
650 GATCGACTCGATCCCTCTCTGCATGCTACTATCGGTC
* *
3153644 TGATCTTAGGCTGGAAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCA
1 TGATCTTAGACTGGAAATGAACACCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCA
*
3153709 ACCCATGAAACGAGCGTGCGGGCACTGAGCCGA-CTAGAGAGGCATAATGCGCAAGTCGGGGATC
66 ACCCATGAAACGAGCGTGCGGGCACTGAGCCGATC-AGAGAGGCATAATGCGCAAGCCGGGGATC
** * * * **
3153773 GGTTCGGACCCCCTCTGCGTGCTGTCAATCCCGCTGCCACAACCCT-TGGTTTGACTGGGGCTTA
130 GGCCCAGACCCCCTCTGCGTGCTGCCAATCCCGCTACCACAACCCTCT-GTCCGACTGGGGCTTA
* ** * * * *
3153837 GACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAATGAGCGTACGGGCGCTCAGCCGGC
194 GACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCATACAGGCACTCAACCGGC
* ** *
3153902 CGGAGAGGTAGAATGCAC-AAACC-GAGGATCGA-CCGGCCTCCCCT-TGCGTGCTA-TCGATCC
259 CGGAGAGCTAGAAT--ACGAAACCAG-GGATCGACCCGATC-CCCCTCTACGTGC-AGTCGATCC
* * * * * *
3153962 TGCTGCTGGTCCTGCTGCCATAACCCTCAACCCGATCTGATCTTAGACTAGGAATGAACTCCATA
319 TGCTACTAGTCCTGCTACCACAACCCTCAACCCAATCCGATCTTAGACTAGGAATGAACTCCATA
* * * *
3154027 TGCTTAGACTCAAGATGAACTTCGTATGGCTAAGTCAACCCACAAAATGAGCGGGCGGGCACTCA
384 TGCTTAGACTCAAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGGACGGGCACTCA
* * * * * *
3154092 ACCGGCCAGAGAAGCAGGATGTGTAAGCTGGGGATCGACCTGGTCCCCTCTGTATGTTATCGATC
449 ACCGGCAAGAGAAGCAGGATGCGTAAGCTGGGGATCAACCCGGTCCCCTCTGTATGCTACCGATC
* * *
3154157 CTGCTATGGGTCCTG-CTACCTC-AACCCTCAGTCCGGTC-CGATCTTAGACTGGGAGTGCACTA
514 CCGCTATAGG-CATGACTACC-CGAA-CC-CAGTCCGGTCTCGATCTTAGACTGGGAGTGCACTA
* *
3154219 CGTATGCCTAAGTCAACCCACGAAACGA
575 CATATGCCAAAGTCAACCCACGAAACGA
3154247 GCGTGCAGGC
Statistics
Matches: 508, Mismatches: 83, Indels: 23
0.83 0.14 0.04
Matches are distributed among these distances:
685 4 0.01
686 440 0.87
687 62 0.12
688 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (686 bp):
TGATCTTAGACTGGAAATGAACACCGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAATCA
ACCCATGAAACGAGCGTGCGGGCACTGAGCCGATCAGAGAGGCATAATGCGCAAGCCGGGGATCG
GCCCAGACCCCCTCTGCGTGCTGCCAATCCCGCTACCACAACCCTCTGTCCGACTGGGGCTTAGA
CATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACAAGCATACAGGCACTCAACCGGCCG
GAGAGCTAGAATACGAAACCAGGGATCGACCCGATCCCCCTCTACGTGCAGTCGATCCTGCTACT
AGTCCTGCTACCACAACCCTCAACCCAATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAG
ACTCAAGATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGGACGGGCACTCAACCGGCA
AGAGAAGCAGGATGCGTAAGCTGGGGATCAACCCGGTCCCCTCTGTATGCTACCGATCCCGCTAT
AGGCATGACTACCCGAACCCAGTCCGGTCTCGATCTTAGACTGGGAGTGCACTACATATGCCAAA
GTCAACCCACGAAACGAACATGTGGGAGCTCAGCCGGTCGGAGAGCCTGGATGCGCAATCCGAGG
ATCGACTCGATCCCTCTCTGCATGCTACTATCGGTC
Found at i:3155463 original size:45 final size:45
Alignment explanation
Indices: 3155411--3155578 Score: 155
Period size: 45 Copynumber: 3.8 Consensus size: 45
3155401 ACAAGCTGGG
*
3155411 CCTTGGTGTGGGCAGTTGCCTCGATCACCATCGACACATGTCGGC
1 CCTTGGTGTGGGCAGTTGCATCGATCACCATCGACACATGTCGGC
* * * * * *
3155456 CCTTGGTGTGGGCGGTTACATTGATCACCATCGGCACAAGAT-GAC
1 CCTTGGTGTGGGCAGTTGCATCGATCACCATCGACACATG-TCGGC
* * * *
3155501 CCCTGGTGTGGGCAGTTGCATCGAACACCATCGGCACATG-CTGGG
1 CCTTGGTGTGGGCAGTTGCATCGATCACCATCGACACATGTC-GGC
* * *
3155546 TCATGGTGTGGGC-GATTGCCTCGA-CACCATCGA
1 CCTTGGTGTGGGCAG-TTGCATCGATCACCATCGA
3155579 TTCATGCCGA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
44 9 0.09
45 90 0.90
46 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (45 bp):
CCTTGGTGTGGGCAGTTGCATCGATCACCATCGACACATGTCGGC
Found at i:3157276 original size:26 final size:26
Alignment explanation
Indices: 3157247--3157299 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3157237 CCGGTCTGAT
* *
3157247 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
3157273 CTTAGACTATGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
3157299 C
1 C
3157300 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:3157639 original size:26 final size:26
Alignment explanation
Indices: 3157603--3157655 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3157593 CCCATCCGAT
* *
3157603 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
3157629 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
3157655 C
1 C
3157656 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:3159440 original size:90 final size:90
Alignment explanation
Indices: 3159345--3159510 Score: 192
Period size: 90 Copynumber: 1.8 Consensus size: 90
3159335 AGCTAGGCCC
* * * *
3159345 TGGTGCAAGC-AGTTGTC-TCGATCACCATCTGCACATGCCGACCCTTGGTGCGGGTGATTGCCT
1 TGGTGCAAGCGA-TTG-CATCGAACACCATCGGCACATGCCGACCCGTGGTGCGGGCGATTGCCT
3159408 CAACCACCATCGAGATAAGATGGCTCT
64 CAACCACCATCGAGATAAGATGGCTCT
** ** ** * *
3159435 TGGTGCGGGCGATTGCATCGAACACCATCGGCACATGTTGGGCCGTGGTGCGGGCGGTTGCCTCG
1 TGGTGCAAGCGATTGCATCGAACACCATCGGCACATGCCGACCCGTGGTGCGGGCGATTGCCTCA
3159500 ACCACCATCGA
66 ACCACCATCGA
3159511 CACATGCCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
89 1 0.02
90 60 0.97
91 1 0.02
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (90 bp):
TGGTGCAAGCGATTGCATCGAACACCATCGGCACATGCCGACCCGTGGTGCGGGCGATTGCCTCA
ACCACCATCGAGATAAGATGGCTCT
Found at i:3160370 original size:45 final size:45
Alignment explanation
Indices: 3160210--3160367 Score: 163
Period size: 45 Copynumber: 3.5 Consensus size: 45
3160200 GTATTGGCAC
* * *
3160210 TTGCCTCGACCGCCAACGGCACAAGCTGGGCCCTGGTGCAGGCGG
1 TTGCCTCGACCACCAACGGCACAAGTTGGGCCCTGGTGCGGGCGG
** * * *
3160255 TTGCCTCGACCACCATTGGCACAAGATGGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCAACGGCACAAGTTGGGCCCTGGTGCGGGCGG
* * * ** * * * *
3160300 TTTCATCGAACACCCTCGGCACATGTTGGGTCGTGGTGCGGGCGA
1 TTGCCTCGACCACCAACGGCACAAGTTGGGCCCTGGTGCGGGCGG
3160345 TTGCCTCGACCACCAACGGCACA
1 TTGCCTCGACCACCAACGGCACA
3160368 TGTCGAGCCC
Statistics
Matches: 89, Mismatches: 24, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
45 89 1.00
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCAACGGCACAAGTTGGGCCCTGGTGCGGGCGG
Found at i:3160932 original size:136 final size:136
Alignment explanation
Indices: 3160674--3160932 Score: 322
Period size: 136 Copynumber: 1.9 Consensus size: 136
3160664 CCGATTGGGG
3160674 CTTAGACCAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAAC
1 CTTAGACCAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAAC
* * * * * *
3160739 CGATTGGAGAGGCAGGATGCGTAAGTCGAGGATCAACCCGGTCCCCCTCTGCATGCTGCTATCGA
66 CGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCTACATGCTGCTATCGA
3160804 TCTGAT
131 TCTGAT
** * * * * *
3160810 CTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGAG
1 CTTAGACCAGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAA
* * **** *
3160874 CCGATCGAAGAGGCATAATGCGCAAGCCGGGGATTGGTCCGGTCCCCCTCTACGTGCTG
65 CCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCTACATGCTG
3160933 TCGATCCCAC
Statistics
Matches: 102, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
135 2 0.02
136 100 0.98
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (136 bp):
CTTAGACCAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAAC
CGATCGAAGAGGCAGAATGCGCAAGCCGAGGATCAACCCGGTCCCCCTCTACATGCTGCTATCGA
TCTGAT
Found at i:3161168 original size:26 final size:26
Alignment explanation
Indices: 3161139--3161191 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3161129 TCGATCCCAT
3161139 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
3161165 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
3161191 C
1 C
3161192 CTAAGACAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3161198 original size:27 final size:26
Alignment explanation
Indices: 3161142--3161198 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
3161132 ATCCCATCTT
*
3161142 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTA
*
3161168 AGACTGGGGATGAACTCCATATGCCTA
1 AGACTGGGAATGAACTCCATATG-CTA
3161195 AGAC
1 AGAC
3161199 AACCCACAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTA
Found at i:3162215 original size:45 final size:45
Alignment explanation
Indices: 3162133--3162245 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 45
3162123 GTACAGGCAC
* * *
3162133 TTGCCTCGACCACCATCGGCACAAGCTAGGCATTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACAAGATAGGCACTGGTGCAGGCGG
* * **
3162178 TTGCCTCGACCACCATCGACATAAGAT-GGCCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGACACAAGATAGG-CACTGGTGCAGGCGG
* *
3162223 TTGCATCGAACACCATCGACACA
1 TTGCCTCGACCACCATCGACACA
3162246 TGCGGGGCTG
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 2 0.04
45 55 0.96
ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGATAGGCACTGGTGCAGGCGG
Found at i:3162754 original size:26 final size:26
Alignment explanation
Indices: 3162718--3162770 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3162708 TTCATTCGAT
3162718 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
3162744 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3162770 C
1 C
3162771 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3164071 original size:45 final size:45
Alignment explanation
Indices: 3164012--3164142 Score: 129
Period size: 45 Copynumber: 2.9 Consensus size: 45
3164002 CATGGCGATG
* * * *
3164012 GCACATGCATCGACCATCATCGGCACAGGCT-GCCCTTTGGTACGA
1 GCACTTGCCTCGACCACCATCGGCACAAGCTGGCCC-TTGGTACGA
* * * * *
3164057 GCACTTGCCTCGACCGCCATCGACACAAGCTGGGCCTTGGTGCGG
1 GCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCTTGGTACGA
* * **
3164102 GTAGTTGCCTCGACCACCATCGGCACAAAATGGCCCTTGGT
1 GCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCTTGGT
3164143 GTGGGAGGTT
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
45 66 0.96
46 3 0.04
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.20
Consensus pattern (45 bp):
GCACTTGCCTCGACCACCATCGGCACAAGCTGGCCCTTGGTACGA
Found at i:3164143 original size:45 final size:45
Alignment explanation
Indices: 3164061--3164212 Score: 146
Period size: 45 Copynumber: 3.4 Consensus size: 45
3164051 GTACGAGCAC
* * ** *
3164061 TTGCCTCGACCGCCATCGACACAAGCTGGGCCTTGGTGCGGGTA-G
1 TTGCCTCGACCACCATCGGCACAAAATGGCCCTTGGTGCGGG-AGG
*
3164106 TTGCCTCGACCACCATCGGCACAAAATGGCCCTTGGTGTGGGAGG
1 TTGCCTCGACCACCATCGGCACAAAATGGCCCTTGGTGCGGGAGG
* * *** * *
3164151 TTGCATCGAACACCATCGGCACATGTTGAG-CCATGGTGCGGGCGG
1 TTGCCTCGACCACCATCGGCACAAAATG-GCCCTTGGTGCGGGAGG
*
3164196 TTGCCTTGACCACCATC
1 TTGCCTCGACCACCATC
3164213 AACACATGCC
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
44 1 0.01
45 86 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAAATGGCCCTTGGTGCGGGAGG
Found at i:3164700 original size:26 final size:26
Alignment explanation
Indices: 3164661--3164713 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3164651 TCGGTCCGAT
* *
3164661 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
3164687 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
3164713 C
1 C
3164714 CTAAGACAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:3166211 original size:45 final size:45
Alignment explanation
Indices: 3166016--3166212 Score: 189
Period size: 45 Copynumber: 4.4 Consensus size: 45
3166006 CACTTGCCAT
* ** * * *
3166016 GACCGCCATCGGCACAAACTGGGCCTTGGTGCAGGCGGTTTCCTC
1 GACCACCATCGGCACATGCTGGCCCTTGGTGCGGGCGGTTGCCTC
* * * *
3166061 GATCACCATCGGCACATGCCGGCCCTTGGTGCGGGCGATTGCCTT
1 GACCACCATCGGCACATGCTGGCCCTTGGTGCGGGCGGTTGCCTC
* ** *** * *
3166106 GACCACTATCGTTACAAAATGGCCCCTGGT-CGGGCGGTTGCATC
1 GACCACCATCGGCACATGCTGGCCCTTGGTGCGGGCGGTTGCCTC
* * *
3166150 GAACACCATCGGCACATGCTGGGCCGTGGTGCGGGCGGTTGCCTC
1 GACCACCATCGGCACATGCTGGCCCTTGGTGCGGGCGGTTGCCTC
*
3166195 GACCACCATCGACACATG
1 GACCACCATCGGCACATG
3166213 TCGAGCCTCG
Statistics
Matches: 117, Mismatches: 34, Indels: 2
0.76 0.22 0.01
Matches are distributed among these distances:
44 32 0.27
45 85 0.73
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
GACCACCATCGGCACATGCTGGCCCTTGGTGCGGGCGGTTGCCTC
Found at i:3166704 original size:26 final size:26
Alignment explanation
Indices: 3166653--3166705 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3166643 TCAGTCCAAT
*
3166653 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
3166679 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3166705 C
1 C
3166706 CTAAATCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3167847 original size:26 final size:26
Alignment explanation
Indices: 3167803--3167855 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
3167793 TCGATTCGAT
3167803 CTTAGACTGAGAACGAACT-TCGTATG
1 CTTAGACTGAGAACGAACTCT-GTATG
* **
3167829 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGAGAACGAACTCTGTATG
3167855 C
1 C
3167856 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCTGTATG
Found at i:3168194 original size:26 final size:26
Alignment explanation
Indices: 3168158--3168210 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3168148 TCGATCTGAT
3168158 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
3168184 CTTAGACTGGGGATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
3168210 C
1 C
3168211 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:3168282 original size:674 final size:669
Alignment explanation
Indices: 3166835--3168287 Score: 1692
Period size: 674 Copynumber: 2.2 Consensus size: 669
3166825 TCTGGCTGGG
*
3166835 GCTTAGACATGGAATGAACTCCGTATCCCTAAGCCAACCCATGAAACGAGCGTACCGGGGCTCAA
1 GCTTAGAC-TGGGATGAACTCCGTAT-CCTAAGCCAACCCATGAAACGAGC--ACCGGGGCTCAA
* *
3166900 CCGACCGGAGAGGAAAAATGCGTAAG-TCGGGGATC-AGCCCAGTCCCCCCTGCGTGTTGTCGAT
62 CCGGCCGGAGAGGAAAAATGCGTAAGCT-GGGGATCGA-CCCAGTCCCCCCTGCGTGTTGCCGAT
* *
3166963 CCCACTGTAGGTCCCTCAGTCTGGTTGGGGCTTAGACCAAGAATCAATTTCGTATGCCTAAGTCA
125 CCCACTGTAGGTCCCTCAGTCTGGTTGGGGCTTAGACCAAGAATCAACTCCGTATGCCTAAGTCA
* *** *
3167028 ACCCACGAAACGAGCGTGCTGGTGTTCAGCCGACCGAAGAGGCAGGATACGCAAGCTGAGGATCC
190 ACCCACAAAACGAGCGTGCTGGCACTCAACCGACCGAAGAGGCAGGATACGCAAGCTGAGGATCC
* * * * * * * *
3167093 ACTCGATCCCCCTTTGCGTGCTGTTGTCGGTCCGATCTTGGACTGGGAATGAACTCTGTATGCTT
255 ACCCGATCCCCCTCTACGTGCTGCTGTCGATCCGATCTTAGACTGAGAACGAACTCTGTATGCTT
* **
3167158 AGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTGAGCCGG
320 AGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCACTGAGCCAA
** * * * *
3167223 CCGGAGAGGCATAATGGACAAGTCGAGGATCGGCCCGGTCCCTCTCTACGTGCTGTCGGTCCCAC
385 CCAAAGAGGCATAATGGACAAGCCGAGGATCGGCCCGATCCCTCTCTACATGATGTCGGTCCCAC
* * *
3167288 TGCCACAACCTTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
450 TGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCC
* *
3167353 ACGAAACAAGTGCGCGATGGCTCAACCGGCCGGAGAGGCACAATGCACAAGCCGGGGATCGACCC
515 ACGAAACAAGTGCGCGATGGCTCAACCAGCCGGAGAGGCACAATGCACAAGCCGGGGATAGACCC
* * * * * *
3167418 GATCCCTCCATGCTTGCTATCGATCCTGCTGTTGGTCCTGTTACTGTAACACTCGATCCGGTTCG
580 GATCCCCCCATGCGTGCTATCGATCCTACTGCTGGTCCTGTCAC--TAACACTCGATCCGATTCG
3167483 ATCTTAGACTGGAAATGAACTCCATAT
643 ATCTTAGACTGGAAATGAACTCCATAT
* * *
3167510 GCTTATACTAGGGATGAACTCCGTATCCTTAAGCCAACCCATGAAACGAGCGTA-CGTGGCTCAG
1 GCTTAGACT-GGGATGAACTCCGTATCC-TAAGCCAACCCATGAAACGAGC--ACCGGGGCTCAA
* * *
3167574 CCGGTCGGAGAGGAAAAATGCATAAGCCGGGGATCGACCCAGTCCCCCCTGCGTGTTGCCGATCC
62 CCGGCCGGAGAGGAAAAATGCGTAAGCTGGGGATCGACCCAGTCCCCCCTGCGTGTTGCCGATCC
* * ** *
3167639 CACTGTGGGTCCCTCGGTCTGGTTGGGGCTTAGACCGGGAATGAACTCCGTATGCCTAAGTCAAC
127 CACTGTAGGTCCCTCAGTCTGGTTGGGGCTTAGACCAAGAATCAACTCCGTATGCCTAAGTCAAC
* * * ** * *
3167704 CCACAAAATGATCGTGCTGGCACTCAATCGGTCGAAGAGGTAGGATGCGCAAG-TCGAGGATCCA
192 CCACAAAACGAGCGTGCTGGCACTCAACCGACCGAAGAGGCAGGATACGCAAGCT-GAGGATCCA
* *
3167768 CCCGGTCCCCCTCTACGTGCTGCTGTCGATTCGATCTTAGACTGAGAACGAACT-TCGTATGCTT
256 CCCGATCCCCCTCTACGTGCTGCTGTCGATCCGATCTTAGACTGAGAACGAACTCT-GTATGCTT
* *
3167832 AGACTGGGAATTAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGTGGGCACTGAGCCAA
320 AGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCACTGAGCCAA
* * * * **
3167897 TCAAAGAGGCGTAATGGATAAGCC-AGGGATCGGCCCTATCCCTCTCTGTATGATGTCGGTCCCA
385 CCAAAGAGGCATAATGGACAAGCCGA-GGATCGGCCCGATCCCTCTCTACATGATGTCGGTCCCA
* * * * * *
3167961 CTGCCATAACCCTCGGTCTAATTGGGGCTTAGACATGGAATGAACTACTTATGTCTAAGCTAA-C
449 CTGCCACAACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACC
* * * * * ** *
3168025 CATCGAAA-AGAGCGTGCG-GGT-GCTCAGCCAGTCGGAGAGGTAGAATGCGTAAGCTGGGGATT
514 CA-CGAAACA-A--GTGCGCGATGGCTCAACCAGCCGGAGAGGCACAATGCACAAGCCGGGGA-T
* * * * * *
3168087 AG-CCCGGTCCCCCCA-GCGTGCTGTCGATCTTACTGCTGGTCTTGCTGTCAC-AACCCTCGGTT
574 AGACCCGATCCCCCCATGCGTGCTATCGATCCTACTGCTGGTC---CTGTCACTAACACTCGATC
*
3168149 CGA-TCTGATCTTAGACTGGGAATGAACTCCATAT
636 CGATTC-GATCTTAGACTGGAAATGAACTCCATAT
* * *
3168183 GCTTAGACTGGGGATGAACTCCTTATGCCTAAGTCAACCCACGAAACGAGCACGCGGGTGCTCAA
1 GCTTAGACT-GGGATGAACTCCGTAT-CCTAAGCCAACCCATGAAACGAGCAC-CGGG-GCTCAA
** * ** *
3168248 CCGGCCAAAGAGGCAGGATGCGCAAGCTGGGGATCGACCC
62 CCGGCCGGAGAGGAAAAATGCGTAAGCTGGGGATCGACCC
3168288 GATCCCCTCC
Statistics
Matches: 655, Mismatches: 103, Indels: 41
0.82 0.13 0.05
Matches are distributed among these distances:
671 1 0.00
672 2 0.00
673 111 0.17
674 478 0.73
675 52 0.08
676 11 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (669 bp):
GCTTAGACTGGGATGAACTCCGTATCCTAAGCCAACCCATGAAACGAGCACCGGGGCTCAACCGG
CCGGAGAGGAAAAATGCGTAAGCTGGGGATCGACCCAGTCCCCCCTGCGTGTTGCCGATCCCACT
GTAGGTCCCTCAGTCTGGTTGGGGCTTAGACCAAGAATCAACTCCGTATGCCTAAGTCAACCCAC
AAAACGAGCGTGCTGGCACTCAACCGACCGAAGAGGCAGGATACGCAAGCTGAGGATCCACCCGA
TCCCCCTCTACGTGCTGCTGTCGATCCGATCTTAGACTGAGAACGAACTCTGTATGCTTAGACTG
GGAATTAACTCCGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCACTGAGCCAACCAAAG
AGGCATAATGGACAAGCCGAGGATCGGCCCGATCCCTCTCTACATGATGTCGGTCCCACTGCCAC
AACCCTCGGTCCAACTGGGGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAA
CAAGTGCGCGATGGCTCAACCAGCCGGAGAGGCACAATGCACAAGCCGGGGATAGACCCGATCCC
CCCATGCGTGCTATCGATCCTACTGCTGGTCCTGTCACTAACACTCGATCCGATTCGATCTTAGA
CTGGAAATGAACTCCATAT
Found at i:3169759 original size:26 final size:24
Alignment explanation
Indices: 3169723--3169775 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 24
3169713 CCCGCTGTCG
* *
3169723 CTCTTATCTTAGACTGGGGATGAA
1 CTCTTATCTTAGACTAGGAATGAA
3169747 CTCTATATGCTTAGACTAGGAATGAA
1 CTCT-TAT-CTTAGACTAGGAATGAA
3169773 CTC
1 CTC
3169776 CGTATGCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 4 0.16
25 3 0.12
26 18 0.72
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (24 bp):
CTCTTATCTTAGACTAGGAATGAA
Found at i:3169781 original size:26 final size:26
Alignment explanation
Indices: 3169730--3169782 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
3169720 TCGCTCTTAT
* * *
3169730 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
3169756 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
3169782 C
1 C
3169783 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3170118 original size:26 final size:26
Alignment explanation
Indices: 3170082--3170134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3170072 CCGATCCGAT
*
3170082 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
3170108 CTTAGACTGGGGACGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
3170134 C
1 C
3170135 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:3170314 original size:134 final size:134
Alignment explanation
Indices: 3170068--3170318 Score: 367
Period size: 134 Copynumber: 1.9 Consensus size: 134
3170058 CCACAATCCT
*
3170068 CGGTCCGATCCGATCTTAGACTGGGAAAGAACTCTGTATGCTTAGACTGGGGACGAACTCCGTAT
1 CGGTCCGATCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGGACGAACTCCGTAT
** * * * *
3170133 GCCTAAGTAAACCCACGAAATGATCGTGCGGGAGCTCAGCCAACCAGAGAGGTAGGATACGTAAG
66 GCCTAAGTAAACCCACGAAACAAGCATACGGGAGCTCAACCAACCAGAGAGGTAGGATACGTAAG
3170198 CCGG
131 CCGG
* * **
3170202 CGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTTGTAT
1 CGGTCCGATCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGGACGAACTCCGTAT
* * * *
3170267 GCCTAAGTCAACCCACGAAACAAGCATACGGGTGCTCAATCATCCAGAGAGG
66 GCCTAAGTAAACCCACGAAACAAGCATACGGGAGCTCAACCAACCAGAGAGG
3170319 CAAGATGCAC
Statistics
Matches: 102, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
134 102 1.00
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.20
Consensus pattern (134 bp):
CGGTCCGATCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGGACGAACTCCGTAT
GCCTAAGTAAACCCACGAAACAAGCATACGGGAGCTCAACCAACCAGAGAGGTAGGATACGTAAG
CCGG
Found at i:3171355 original size:45 final size:45
Alignment explanation
Indices: 3171218--3171357 Score: 147
Period size: 45 Copynumber: 3.1 Consensus size: 45
3171208 GCTTCGACTG
* *
3171218 CCATCGGCACAAGTTGGGCCCTGGTGCGAGCGGTTTCCTCGACCA
1 CCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
* * * * * * * *
3171263 CCATCGGTATAAGAT-AGCCTCTGGTGAGGGCGGTTGCATCAAACA
1 CCATCGGCACAAGTTGGGCC-CTGGTGCGGGCGGTTGCCTCGACCA
* * *
3171308 CCATCGGCACATGTTGGGCCATGGTGCGGGTGGTTGCCTCGACCA
1 CCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
3171353 CCATC
1 CCATC
3171358 CGTACATGTC
Statistics
Matches: 72, Mismatches: 21, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
44 3 0.04
45 66 0.92
46 3 0.04
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (45 bp):
CCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTGCCTCGACCA
Found at i:3171842 original size:26 final size:26
Alignment explanation
Indices: 3171806--3171856 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
3171796 TTAATCCAAT
*
3171806 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3171832 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
3171857 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3172030 original size:26 final size:26
Alignment explanation
Indices: 3172001--3172056 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
3171991 CCGATCTGAT
*
3172001 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
3172027 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
3172053 CTTA
1 CTTA
3172057 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:3173062 original size:45 final size:45
Alignment explanation
Indices: 3173013--3173153 Score: 110
Period size: 45 Copynumber: 3.1 Consensus size: 45
3173003 GACCGTCGTT
*
3173013 GGCACAAGTTGGGCCCTGGTGCAGAAGGTTGCCTCGATCACCATC
1 GGCACAAGTTGGGCCCTGGTGCAGAAGGTTGCCTCGAACACCATC
* * * *
3173058 GGCAC-A-TATCGGCCCTTGGTGTGAGCAA--TTGCCTTGACCACCATC
1 GGCACAAGT-TGGGCCC-TGGTG-CAG-AAGGTTGCCTCGAACACCATC
* * ** ** *
3173103 GGCACAAGATGGCCCCTGGTGTGGGCGGTTGCATCGAACACCATC
1 GGCACAAGTTGGGCCCTGGTGCAGAAGGTTGCCTCGAACACCATC
3173148 GGCACA
1 GGCACA
3173154 TGCAGGTGTC
Statistics
Matches: 74, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
43 1 0.01
44 8 0.11
45 55 0.74
46 8 0.11
47 2 0.03
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (45 bp):
GGCACAAGTTGGGCCCTGGTGCAGAAGGTTGCCTCGAACACCATC
Found at i:3179470 original size:77 final size:77
Alignment explanation
Indices: 3179343--3179492 Score: 264
Period size: 77 Copynumber: 1.9 Consensus size: 77
3179333 ATGCGTAAGC
*
3179343 CGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCAATCTCGCTGCGGGTCCCTCGGTCTGGTTGG
1 CGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCAATCTCGCTGCGGGTCCCTCGGTCTGGTTAG
3179408 GGCTTAGAAAGT
66 GGCTTAGAAAGT
* * *
3179420 CGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCTCGCTGCGGGTCCCTCGGTCTGGTTAG
1 CGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCAATCTCGCTGCGGGTCCCTCGGTCTGGTTAG
3179485 GGCTTAGA
66 GGCTTAGA
3179493 CCAGGAATGA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 69 1.00
ACGTcount: A:0.11, C:0.33, G:0.32, T:0.24
Consensus pattern (77 bp):
CGAGGATCAGCCCGGTCCCCCTCTGCGTGCTACCAATCTCGCTGCGGGTCCCTCGGTCTGGTTAG
GGCTTAGAAAGT
Found at i:3179981 original size:26 final size:26
Alignment explanation
Indices: 3179940--3179992 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
3179930 CCGGTCCGAT
*
3179940 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
3179966 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
3179992 C
1 C
3179993 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:3180985 original size:45 final size:45
Alignment explanation
Indices: 3180936--3181034 Score: 126
Period size: 45 Copynumber: 2.2 Consensus size: 45
3180926 GTATGGGCAC
* * *
3180936 TTGCCTCGACCGCCATCAGCACAAGCTGATCCCTAGTGCAGGTGG
1 TTGCCTCGACCACCATCAGCACAAGATGACCCCTAGTGCAGGTGG
* * *
3180981 TTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGTAGGTGG
1 TTGCCTCGACCACCATCAGCACAAGATGACCCCTAGTGCAGGTGG
* *
3181026 CTGCATCGA
1 TTGCCTCGA
3181035 ACACTATCGA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.20, C:0.32, G:0.27, T:0.20
Consensus pattern (45 bp):
TTGCCTCGACCACCATCAGCACAAGATGACCCCTAGTGCAGGTGG
Found at i:3181571 original size:26 final size:26
Alignment explanation
Indices: 3181535--3181584 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
3181525 TTGGTCTGAT
3181535 CTTAGACTGGGAATGAACTCCGTAGG
1 CTTAGACTGGGAATGAACTCCGTAGG
*
3181561 CTTAGACTGGGAATGAAGTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
3181585 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAGG
Found at i:3181920 original size:26 final size:26
Alignment explanation
Indices: 3181881--3181934 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
3181871 GGTCTGATCT
3181881 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATATGCC
*
3181907 TAGACT-GGAGATGAACTCCGTATGCC
1 TAGACTGGGA-ATGAACTCCATATGCC
3181933 TA
1 TA
3181935 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCC
Done.